Citrus Sinensis ID: 013220

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------
Protein Sequence
MSCSSSSGSEDDDEGIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEKVDVGMSKLEIKVGK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEEccccEEEcccEEEEEEEcccccccEEEEEEccccEEEEEEEEEccccccccHHHHHHHHHHHHccccccccccccccccEEEEcccccccEEEEccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEcccccEEEcccccccccccccccccHHHHcccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHccccHHHHHcccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHcccccccccccHHHHHcccccccccccccccccccccccccccccccHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHcccccccccccccEEccccEEEEEEEEEcccEEEEEEEEccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHccccHHccEccccEEEEEEccccEEEEEEEEccccEHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcEEcccccHHHEEcEcccccccccccccEEEcccccccccccEEEccccccHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccccEccEEccHHHcEEccEccccccccHHHccHHHHcccccccHHHHHHHHHHHHHHHHcccccccccEccEcHHHHHHHHHHHHHccccHHHHHHcccHHHHEcccccEcccccccEccHHHHHHHcccccHHHHHHHHHHHcccccccccccEcHHHHHccHHHHcccccccccccccccccccccccHHHHcccc
Coil and Loop (DISEMBL)
mscssssgsedddegidsyrkggyhavrvgdlfnggryiaqrklgwGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLsavadgdpsneKCVIRLIDHfkhagpngQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRElgiihtdlkpenillvstidpskdpirsgltpilerpegsinggstsTMTIVEKKLKRRAKRAVANISIRrasmggielpkpercldgidmRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAtgdmlfapksgqgfcedEDHLALMMELIGKMprkiaiggaqskdyfdrhgdlkriRRLKFWSLDRLLVDKYRFSETDAREFAEFLVplldftpekrptaqqclqhpwlslrnstrdetknksnvekvDVGMSKLEIKVGK
Flexible Loop (DISEMBL)
mscssssgsedddEGIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRykglelnkvREICKYILTGLDYLHRELGIIHTDLKPENILLVstidpskdpirsgltpilerpegsinggststmTIVEKKlkrrakravanisirrasmggielpkperCLDGIDMRCKVVDFGNACRANKQFAeeiqtrqyraPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGgaqskdyfdrhgdlkrirrlkfwsldrlLVDKYRFSETDAREFAEFLVPLLDFTPEKRPtaqqclqhpwlslrnstrdetknksnvekvdvgmskleikvgk
Low Complexity Region (SEG)
MscssssgsedddegidsYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEkklkrrakravaNISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEKVDVGMSKLEIKVGK
Disordered region (IsUnstruct)
******************YRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTI*******************************************AVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPE****AQQCLQHPWL********************************
Disordered Region (DISOPRED)
****************DSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLS***********CVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGS*STMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL********************************
Disordered Region (DISEMBL)
***************IDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEK********AVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEKVDVGMSKLEIKVGK
Disordered Region (DISPRO)
****************DSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN****************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSCSSSSGSEDDDEGIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEKVDVGMSKLEIKVGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	447	2.2.26 [Sep-21-2011]
Q45FA5	426	Serine/threonine-protein	N/A	no	0.859	0.901	0.428	3e-94
P36616	544	Protein kinase dsk1 OS=Sc	yes	no	0.899	0.738	0.374	7e-86
Q96SB4	655	SRSF protein kinase 1 OS=	yes	no	0.398	0.271	0.5	1e-51
Q5RD27	655	SRSF protein kinase 1 OS=	yes	no	0.398	0.271	0.5	1e-51
O70551	648	SRSF protein kinase 1 OS=	yes	no	0.357	0.246	0.524	7e-51
P78362	688	SRSF protein kinase 2 OS=	no	no	0.476	0.309	0.437	2e-50
O54781	681	SRSF protein kinase 2 OS=	no	no	0.357	0.234	0.524	5e-50
Q86A12	656	Probable serine/threonine	yes	no	0.362	0.246	0.552	2e-48
Q9UPE1	567	SRSF protein kinase 3 OS=	no	no	0.357	0.282	0.487	4e-46
Q9Z0G2	565	SRSF protein kinase 3 OS=	no	no	0.357	0.283	0.487	6e-46

>sp|Q45FA5|SRPK_PHYPO Serine/threonine-protein kinase SRPK OS=Physarum polycephalum PE=1 SV=1

 Score =  346 bits (887), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 178/415 (42%), Positives = 257/415 (61%), Gaps = 31/415 (7%)

Query: 10  EDDDEGIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSY-VALKI 68
           + +DEG + Y+KGGYH V+VG+++     I  +KLGWG FS VWLA D +     VALKI
Sbjct: 29  DSEDEGTEDYKKGGYHPVKVGEVYKSNYRIV-KKLGWGHFSTVWLAIDEKNGGREVALKI 87

Query: 69  QKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSL 128
            KSA+ + +AA  EI +L  +++GDP ++ CV++L+D F H GP+G+H+CMV E LG +L
Sbjct: 88  VKSASHYREAAEDEIHLLQTISEGDPESKYCVVKLLDSFLHTGPHGKHICMVFEKLGSNL 147

Query: 129 LRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI 188
           L LIK   YKG+ L  V+ + K IL GLDYLH +  IIHTDLKPEN+LL   + P     
Sbjct: 148 LDLIKLHNYKGIPLPLVKCMTKQILIGLDYLHTKCKIIHTDLKPENVLLDHLLRPD---- 203

Query: 189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCL 248
                  L   +  ++G S+S+       +   A+ A      R+   G I+     R  
Sbjct: 204 ------TLNWDDQFLDGASSSS------PISNDAENA------RQTRSGKIKWEPSARIA 245

Query: 249 DGIDMR------CKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           D +  +       K+ D G AC  +K F +++QTRQYR PEVIL   +  ++DMWS AC 
Sbjct: 246 DSLSRKIVKVPIVKIADLGTACWTHKHFTDDVQTRQYRCPEVILGQKWDTTIDMWSLACM 305

Query: 303 AFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRI 362
            FELATGD+LF PK G  + + +DHLALM+EL+G+MPR     G++S+ YF+  G+LK I
Sbjct: 306 VFELATGDLLFCPKKGDKYDKTDDHLALMIELLGRMPRSFITKGSKSEKYFNSKGELKYI 365

Query: 363 RRL-KFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
           R+L   W +  +L +KYRF + +A + + FL+P+L + PEKR TA+  L+HP+++
Sbjct: 366 RKLGPQWGMSDVLYEKYRFPKEEADKLSAFLLPMLQYEPEKRATARDSLEHPYMA 420

Phosphorylates serine/arginine-rich protein PSR.
Physarum polycephalum (taxid: 5791)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|P36616|DSK1_SCHPO Protein kinase dsk1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dsk1 PE=3 SV=2

 Score =  318 bits (814), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 173/462 (37%), Positives = 253/462 (54%), Gaps = 60/462 (12%)

Query: 13  DEGIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA 72
           +E  + Y  GGYH V +G+ F+  RY+ +RKLGWG FS VWLAYD      VALK+ +SA
Sbjct: 56  EENAEDYHYGGYHPVYIGEEFHHRRYVVERKLGWGHFSTVWLAYDRAAKRRVALKVVRSA 115

Query: 73  AQFAQAALHEIEVLSAVADGDPSN--EKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLR 130
             + + ++ EI +L  + +GD  +  +K +I L+D+F H GPNG H+CMV E LG++LL 
Sbjct: 116 EHYRETSIDEIRILQKIREGDEKHLGKKHIISLLDYFVHRGPNGAHVCMVFEVLGENLLS 175

Query: 131 LIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTID-------P 183
           LI+   ++G+ +  V++I   +L  LDYLHRE GIIHTDLKPEN+L+    D       P
Sbjct: 176 LIQSYGHRGVPVGIVKQIAYQLLIALDYLHRECGIIHTDLKPENVLICIDQDALQHIEAP 235

Query: 184 SKDPI------------RSGLT---PILERPEGSINGGSTSTMTIVEKKLKRRA------ 222
           +                 +G T   PI++R + S++  +    T  +   K         
Sbjct: 236 ATTSSPTSNTSSSKTRNNTGYTAKAPIIKRGQ-SVDNSAQERKTFAKNPTKNSKPAGQVI 294

Query: 223 ---------------KRAVANISIRRASMGGIELPKP------ERCLDGID--------M 253
                          + AV+ IS+R +         P         LDG++        +
Sbjct: 295 PSSPFTSTLSRFPSLEGAVSEISLRDSQKHNSHPNSPFSSGDNSLILDGVNGSQEPVPKI 354

Query: 254 RCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLF 313
             K+ D GNAC   K F  ++QTRQYR+PEVIL   +  S D WSFAC  FEL TGD LF
Sbjct: 355 TVKIADLGNACWTRKHFTNDVQTRQYRSPEVILGCRWGASADCWSFACIIFELLTGDYLF 414

Query: 314 APKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRL 373
            P++G  + +++DH+A ++EL+   P+++A+ G  S+D F+R G+L+ I +LKFW L  +
Sbjct: 415 DPRNGNSYSKEDDHIAQIIELLVNYPKQMALSGKHSRDLFNRRGELRNIHKLKFWPLKDV 474

Query: 374 LVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
           L  KY FS   A++ ++FL P+L F P KR  A      PWL
Sbjct: 475 LEQKYHFSAELAQQISDFLSPMLCFDPAKRTNAGYMSNSPWL 516

May play an important role in mitotic control by altering cellular location, degree of phosphorylation and kinase activity. Abundant expression accelerates the exit when cells are in M-phase and also delays the entry into mitosis when cells are in G2. Phosphorylates prp2 in vitro and so may have a role in co-ordinating pre-mRNA splicing with the prgression of the cell division cycle.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q96SB4|SRPK1_HUMAN SRSF protein kinase 1 OS=Homo sapiens GN=SRPK1 PE=1 SV=2

 Score =  204 bits (519), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 91/182 (50%), Positives = 128/182 (70%)

Query: 235 SMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSV 294
           S  G  L  P    +   ++ K+ D GNAC  +K F E+IQTRQYR+ EV++ +GY+   
Sbjct: 473 STAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPA 532

Query: 295 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 354
           D+WS AC AFELATGD LF P SG+ +  DEDH+AL++EL+GK+PRK+ + G  SK++F 
Sbjct: 533 DIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFT 592

Query: 355 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
           + GDLK I +LK W L  +LV+KY +S+ +A  F +FL+P+L+  PEKR TA +CL+HPW
Sbjct: 593 KKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPW 652

Query: 415 LS 416
           L+
Sbjct: 653 LN 654

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains and is involved in the phosphorylation of SR splicing factors and the regulation of splicing. Plays a central role in the regulatory network for splicing, controlling the intranuclear distribution of splicing factors in interphase cells and the reorganization of nuclear speckles during mitosis. Can influence additional steps of mRNA maturation, as well as other cellular activities, such as chromatin reorganization in somatic and sperm cells and cell cycle progression. Isoform 2 phosphorylates SFRS2, ZRSR2, LBR and PRM1. Isoform 2 phosphorylates SRSF1 using a directional (C-terminal to N-terminal) and a dual-track mechanism incorporating both processive phosphorylation (in which the kinase stays attached to the substrate after each round of phosphorylation) and distributive phosphorylation steps (in which the kinase and substrate dissociate after each phosphorylation event). The RS domain of SRSF1 binds first to a docking groove in the large lobe of the kinase domain of SRPK1. This induces certain structural changes in SRPK1 and/or RRM2 domain of SRSF1, allowing RRM2 to bind the kinase and initiate phosphorylation. The cycles continue for several phosphorylation steps in a processive manner (steps 1-8) until the last few phosphorylation steps (approximately steps 9-12). During that time, a mechanical stress induces the unfolding of the beta-4 motif in RRM2, which then docks at the docking groove of SRPK1. This also signals RRM2 to begin to dissociate, which facilitates SRSF1 dissociation after phosphorylation is completed. Isoform 2 can mediate hepatitis B virus (HBV) core protein phosphorylation. It plays a negative role in the regulation of HBV replication through a mechanism not involving the phosphorylation of the core protein but by reducing the packaging efficiency of the pregenomic RNA (pgRNA) without affecting the formation of the viral core particles. Isoform 1 and isoform 2 can induce splicing of exon 10 in MAPT/TAU. The ratio of isoform 1/isoform 2 plays a decisive role in determining cell fate in K562 leukaemic cell line: isoform 2 favors proliferation where as isoform 1 favors differentiation.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q5RD27|SRPK1_PONAB SRSF protein kinase 1 OS=Pongo abelii GN=SRPK1 PE=2 SV=2

 Score =  204 bits (518), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 91/182 (50%), Positives = 128/182 (70%)

Query: 235 SMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSV 294
           S  G  L  P    +   ++ K+ D GNAC  +K F E+IQTRQYR+ EV++ +GY+   
Sbjct: 473 STAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPA 532

Query: 295 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 354
           D+WS AC AFELATGD LF P SG+ +  DEDH+AL++EL+GK+PRK+ + G  SK++F 
Sbjct: 533 DIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFT 592

Query: 355 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
           + GDLK I +LK W L  +LV+KY +S+ +A  F +FL+P+L+  PEKR TA +CL+HPW
Sbjct: 593 KKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPW 652

Query: 415 LS 416
           L+
Sbjct: 653 LN 654

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains and is involved in the phosphorylation of SR splicing factors and the regulation of splicing. Plays a central role in the regulatory network for splicing, controlling the intranuclear distribution of splicing factors in interphase cells and the reorganization of nuclear speckles during mitosis. Can influence additional steps of mRNA maturation, as well as other cellular activities, such as chromatin reorganization in somatic and sperm cells and cell cycle progression. Phosphorylates SFRS2, ZRSR2, LBR and PRM1. Phosphorylates SRSF1 using a directional (C-terminal to N-terminal) and a dual-track mechanism incorporating both processive phosphorylation (in which the kinase stays attached to the substrate after each round of phosphorylation) and distributive phosphorylation steps (in which the kinase and substrate dissociate after each phosphorylation event). The RS domain of SRSF1 binds first to a docking groove in the large lobe of the kinase domain of SRPK1. This induces certain structural changes in SRPK1 and/or RRM2 domain of SRSF1, allowing RRM2 to bind the kinase and initiate phosphorylation. The cycles continue for several phosphorylation steps in a processive manner (steps 1-8) until the last few phosphorylation steps (approximately steps 9-12). During that time, a mechanical stress induces the unfolding of the beta-4 motif in RRM2, which then docks at the docking groove of SRPK1. This also signals RRM2 to begin to dissociate, which facilitates SRSF1 dissociation after phosphorylation is completed. Can mediate hepatitis B virus (HBV) core protein phosphorylation. It plays a negative role in the regulation of HBV replication through a mechanism not involving the phosphorylation of the core protein but by reducing the packaging efficiency of the pregenomic RNA (pgRNA) without affecting the formation of the viral core particles. Can induce splicing of exon 10 in MAPT/TAU.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O70551|SRPK1_MOUSE SRSF protein kinase 1 OS=Mus musculus GN=Srpk1 PE=1 SV=2

 Score =  201 bits (512), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 86/164 (52%), Positives = 122/164 (74%)

Query: 253 MRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDML 312
           ++ K+ D GNAC  +K F E+IQTRQYR+ EV++ +GY+   D+WS AC AFELATGD L
Sbjct: 484 LQVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYL 543

Query: 313 FAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDR 372
           F P SG+ +  DEDH+AL++EL+GK+PRK+ + G  SK++F + GDLK I +LK W L  
Sbjct: 544 FEPHSGEDYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLLE 603

Query: 373 LLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
           +LV+KY + + +A  F +FL+P+L+  PEKR TA +CL+HPWL+
Sbjct: 604 VLVEKYEWPQEEAAGFTDFLLPMLELMPEKRATAAECLRHPWLN 647

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains and is involved in the phosphorylation of SR splicing factors and the regulation of splicing. Plays a central role in the regulatory network for splicing, controlling the intranuclear distribution of splicing factors in interphase cells and the reorganization of nuclear speckles during mitosis. Can influence additional steps of mRNA maturation, as well as other cellular activities, such as chromatin reorganization in somatic and sperm cells and cell cycle progression. Phosphorylates SFRS2, ZRSR2, LBR and PRM1. Phosphorylates SRSF1 using a directional (C-terminal to N-terminal) and a dual-track mechanism incorporating both processive phosphorylation (in which the kinase stays attached to the substrate after each round of phosphorylation) and distributive phosphorylation steps (in which the kinase and substrate dissociate after each phosphorylation event). The RS domain of SRSF1 binds first to a docking groove in the large lobe of the kinase domain of SRPK1. This induces certain structural changes in SRPK1 and/or RRM2 domain of SRSF1, allowing RRM2 to bind the kinase and initiate phosphorylation. The cycles continue for several phosphorylation steps in a processive manner (steps 1-8) until the last few phosphorylation steps (approximately steps 9-12). During that time, a mechanical stress induces the unfolding of the beta-4 motif in RRM2, which then docks at the docking groove of SRPK1. This also signals RRM2 to begin to dissociate, which facilitates SRSF1 dissociation after phosphorylation is completed. Can mediate hepatitis B virus (HBV) core protein phosphorylation. It plays a negative role in the regulation of HBV replication through a mechanism not involving the phosphorylation of the core protein but by reducing the packaging efficiency of the pregenomic RNA (pgRNA) without affecting the formation of the viral core particles. Can induce splicing of exon 10 in MAPT/TAU.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P78362|SRPK2_HUMAN SRSF protein kinase 2 OS=Homo sapiens GN=SRPK2 PE=1 SV=3

 Score =  200 bits (508), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 98/224 (43%), Positives = 143/224 (63%), Gaps = 11/224 (4%)

Query: 193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGID 252
           +P+ E+ E S +   + T++        +AK   A++ +          P   R  D I 
Sbjct: 475 SPLTEQEESSPSHDRSRTVSASSTGDLPKAKTRAADLLVN---------PLDPRNADKI- 524

Query: 253 MRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDML 312
            R K+ D GNAC  +K F E+IQTRQYR+ EV++ AGYS   D+WS AC AFELATGD L
Sbjct: 525 -RVKIADLGNACWVHKHFTEDIQTRQYRSIEVLIGAGYSTPADIWSTACMAFELATGDYL 583

Query: 313 FAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDR 372
           F P SG+ +  DEDH+A ++EL+G +PR  A+ G  S+++F+R G+L+ I +LK WSL  
Sbjct: 584 FEPHSGEDYSRDEDHIAHIIELLGSIPRHFALSGKYSREFFNRRGELRHITKLKPWSLFD 643

Query: 373 LLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
           +LV+KY +   DA +F +FL+P+L+  PEKR +A +CL+HPWL+
Sbjct: 644 VLVEKYGWPHEDAAQFTDFLIPMLEMVPEKRASAGECLRHPWLN 687

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains and is involved in the phosphorylation of SR splicing factors and the regulation of splicing. Promotes neuronal apoptosis by up-regulating cyclin-D1 (CCND1) expression. This is done by the phosphorylation of SRSF2, leading to the suppression of p53/TP53 phosphorylation thereby relieving the repressive effect of p53/TP53 on cyclin-D1 (CCND1) expression. Phosphorylates ACIN1, and redistributes it from the nuclear speckles to the nucleoplasm, resulting in cyclin A1 but not cyclin A2 up-regulation. Plays an essential role in splicesomal B complex formation via the phosphorylation of DDX23/PRP28. Can mediate hepatitis B virus (HBV) core protein phosphorylation. Plays a negative role in the regulation of HBV replication through a mechanism not involving the phosphorylation of the core protein but by reducing the packaging efficiency of the pregenomic RNA (pgRNA) without affecting the formation of the viral core particles.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O54781|SRPK2_MOUSE SRSF protein kinase 2 OS=Mus musculus GN=Srpk2 PE=1 SV=2

 Score =  199 bits (505), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 86/164 (52%), Positives = 121/164 (73%)

Query: 253 MRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDML 312
           +R K+ D GNAC  +K F E+IQTRQYR+ EV++ AGYS   D+WS AC AFELATGD L
Sbjct: 517 IRVKIADLGNACWVHKHFTEDIQTRQYRSIEVLIGAGYSTPADIWSTACMAFELATGDYL 576

Query: 313 FAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDR 372
           F P SG+ +  DEDH+A ++EL+G +PR  A+ G  S+++F+R G+L+ I +LK WSL  
Sbjct: 577 FEPHSGEDYSRDEDHIAHIIELLGSIPRHFALSGKYSREFFNRRGELRHITKLKPWSLFD 636

Query: 373 LLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
           +LV+KY +   DA +F +FL+P+L+  PEKR +A +CL+HPWL+
Sbjct: 637 VLVEKYGWPHEDAAQFTDFLIPMLEMVPEKRASAGECLRHPWLN 680

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains and is involved in the phosphorylation of SR splicing factors and the regulation of splicing. Promotes neuronal apoptosis by up-regulating cyclin-D1 (CCND1) expression. This is done by the phosphorylation of SRSF2, leading to the suppression of p53/TP53 phosphorylation thereby relieving the repressive effect of p53/TP53 on cyclin-D1 (CCND1) expression. Phosphorylates ACIN1, and redistributes it from the nuclear speckles to the nucleoplasm, resulting in cyclin A1 but not cyclin A2 up-regulation. Plays an essential role in splicesomal B complex formation via the phosphorylation of DDX23/PRP28.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q86A12|SKY1_DICDI Probable serine/threonine-protein kinase sky1 OS=Dictyostelium discoideum GN=sky1 PE=3 SV=1

 Score =  194 bits (492), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/163 (55%), Positives = 119/163 (73%), Gaps = 1/163 (0%)

Query: 254 RCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLF 313
           R ++VD GNAC  +K F ++IQTRQYRAPE I++A +   VD+WS AC AFELATGD LF
Sbjct: 486 RAQLVDLGNACWTDKHFTDDIQTRQYRAPEAIVKAKWGTPVDIWSAACMAFELATGDHLF 545

Query: 314 APKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLK-FWSLDR 372
            PKSG+GF + +DHLALM+EL+GK PR I  GG +S+ YF   GDL++I  L   W L  
Sbjct: 546 KPKSGKGFEKSDDHLALMIELLGKPPRFIFAGGDESRVYFTHKGDLRKIPDLSDQWPLFS 605

Query: 373 LLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
           +L +KY+FS  +A++F  FL+P+L++ PEKR TA+ CL H WL
Sbjct: 606 VLTEKYKFSIQEAKDFEAFLLPMLNYLPEKRATAKDCLNHTWL 648

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9UPE1|SRPK3_HUMAN SRSF protein kinase 3 OS=Homo sapiens GN=SRPK3 PE=2 SV=2

 Score =  186 bits (471), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 115/164 (70%)

Query: 253 MRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDML 312
           ++ K+ D GNAC  +K F E+IQTRQYRA EV++ A Y    D+WS AC AFELATGD L
Sbjct: 403 IKIKIADLGNACWVHKHFTEDIQTRQYRAVEVLIGAEYGPPADIWSTACMAFELATGDYL 462

Query: 313 FAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDR 372
           F P SG+ +  DEDH+A ++EL+G +P   A+ G  S+++F+R G+L+ I  LK W L  
Sbjct: 463 FEPHSGEDYSRDEDHIAHIVELLGDIPPAFALSGRYSREFFNRRGELRHIHNLKHWGLYE 522

Query: 373 LLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
           +L++KY +    A +F+ FL+P++++ PEKR +A  CLQHPWL+
Sbjct: 523 VLMEKYEWPLEQATQFSAFLLPMMEYIPEKRASAADCLQHPWLN 566

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains. Phosphorylates the SR splicing factor SRSF1 and the lamin-B receptor (LBR) in vitro. Required for normal muscle development.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9Z0G2|SRPK3_MOUSE SRSF protein kinase 3 OS=Mus musculus GN=Srpk3 PE=2 SV=1

 Score =  185 bits (470), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 115/164 (70%)

Query: 253 MRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDML 312
           ++ K+ D GNAC  +K F E+IQTRQYRA EV++ A Y    D+WS AC AFELATGD L
Sbjct: 401 IKIKIADLGNACWVHKHFTEDIQTRQYRAVEVLIGAEYGPPADIWSTACMAFELATGDYL 460

Query: 313 FAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDR 372
           F P SG+ +  DEDH+A ++EL+G +P   A+ G  S+++F+R G+L+ I  LK W L  
Sbjct: 461 FEPHSGEDYSRDEDHIAHIVELLGDIPPAFALSGRYSREFFNRRGELRHIPNLKHWGLYE 520

Query: 373 LLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
           +L++KY +    A +F+ FL+P++++ PEKR +A  CLQHPWL+
Sbjct: 521 VLMEKYEWPLEQATQFSAFLLPMMEYIPEKRASAADCLQHPWLN 564

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains. Phosphorylates the SR splicing factor SRSF1 and the lamin-B receptor (LBR) in vitro. Required for normal muscle development.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	447
224114475	442	predicted protein [Populus trichocarpa]	0.988	1.0	0.825	0.0
224084119	442	predicted protein [Populus trichocarpa]	0.957	0.968	0.845	0.0
225438452	444	PREDICTED: serine/threonine-protein kina	0.961	0.968	0.824	0.0
255561431	445	srpk, putative [Ricinus communis] gi|223	0.957	0.961	0.814	0.0
147806137	463	hypothetical protein VITISV_038749 [Viti	0.957	0.924	0.815	0.0
356531335	445	PREDICTED: serine/threonine-protein kina	0.995	1.0	0.805	0.0
449434086	444	PREDICTED: SRSF protein kinase 1-like [C	0.959	0.966	0.792	0.0
356559181	445	PREDICTED: serine/threonine-protein kina	0.964	0.968	0.794	0.0
356496553	445	PREDICTED: probable serine/threonine-pro	0.959	0.964	0.782	0.0
357484167	446	Serine/threonine protein kinase SRPK1 [M	0.993	0.995	0.786	0.0

>gi|224114475|ref|XP_002332363.1| predicted protein [Populus trichocarpa] gi|222874680|gb|EEF11811.1| predicted protein [Populus trichocarpa]

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/447 (82%), Positives = 408/447 (91%), Gaps = 5/447 (1%)

Query: 1   MSCSSSSGSEDDDEGIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRT 60
           MSCSS SGSE+DDEGIDSYRKGGYHAVRVGD F+GGRYIAQRKLGWGQFSIVWLAYDTR+
Sbjct: 1   MSCSSPSGSEEDDEGIDSYRKGGYHAVRVGDQFSGGRYIAQRKLGWGQFSIVWLAYDTRS 60

Query: 61  SSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMV 120
           S YVALKIQKSAAQFAQAALHEIE+LSAVA+ DPSN KCV++LIDHFKHAGPNGQH CMV
Sbjct: 61  SKYVALKIQKSAAQFAQAALHEIELLSAVANSDPSNSKCVVQLIDHFKHAGPNGQHQCMV 120

Query: 121 LEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVST 180
           LEFLGDSLLRLI+++ YKGL+L KVREICK ILTGLDYLHRELGIIHTDLKPENILL ST
Sbjct: 121 LEFLGDSLLRLIRHNHYKGLQLEKVREICKCILTGLDYLHRELGIIHTDLKPENILLFST 180

Query: 181 IDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIE 240
           IDP+KDPIRSG+ PILERPEG++NGG  STM ++EKKLKRRAKRAVANIS RR SMGG  
Sbjct: 181 IDPAKDPIRSGIKPILERPEGNLNGG--STMNLIEKKLKRRAKRAVANISGRRDSMGG-A 237

Query: 241 LPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           + K ER LDG+D+RCKVVDFGNAC A KQFA+EIQTRQYRAPEVIL++GYSFSVDMWSFA
Sbjct: 238 MQKSERSLDGVDVRCKVVDFGNACWAVKQFAKEIQTRQYRAPEVILQSGYSFSVDMWSFA 297

Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
           CTAFELATGDMLFAPK GQG+ EDEDHLALMMEL+GKMPRKIAIGGA SKDYFDRHGDLK
Sbjct: 298 CTAFELATGDMLFAPKDGQGYSEDEDHLALMMELLGKMPRKIAIGGALSKDYFDRHGDLK 357

Query: 361 RIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS 420
           RIRRLKFW LDRLLV+KY+F ETDA+E AEFL PLLDFTPE RPTAQQCLQHPW ++++ 
Sbjct: 358 RIRRLKFWPLDRLLVEKYKFPETDAQEIAEFLCPLLDFTPENRPTAQQCLQHPWFNIKSC 417

Query: 421 TRDETKNKSNVEKVDVGMSKLEIKVGK 447
           +++E  ++SNVEK+ VG+S L  KVGK
Sbjct: 418 SQNEMTSESNVEKLGVGVSNL--KVGK 442

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224084119|ref|XP_002307217.1| predicted protein [Populus trichocarpa] gi|222856666|gb|EEE94213.1| predicted protein [Populus trichocarpa]

 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/433 (84%), Positives = 400/433 (92%), Gaps = 5/433 (1%)

Query: 15  GIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ 74
           GIDSYRKGGYHAVRVGD F+GGRYIAQRKLGWGQFS VWLAYDTR+S YVALKIQKSAAQ
Sbjct: 15  GIDSYRKGGYHAVRVGDQFSGGRYIAQRKLGWGQFSTVWLAYDTRSSKYVALKIQKSAAQ 74

Query: 75  FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKY 134
           FAQAALHEIE+LSA+A+ DPSN KCV++LIDHFKHAGPNGQH CMVLEFLGDSLLRLI++
Sbjct: 75  FAQAALHEIELLSAIANSDPSNSKCVVQLIDHFKHAGPNGQHQCMVLEFLGDSLLRLIRH 134

Query: 135 SRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP 194
           +RYKGLEL+KVREICK I+TGLDYLHRELGIIH+DLKPENILL STIDP+KDPIRSGLTP
Sbjct: 135 NRYKGLELDKVREICKCIVTGLDYLHRELGIIHSDLKPENILLFSTIDPAKDPIRSGLTP 194

Query: 195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMR 254
           ILERPEG+ NG  TSTMT++EKKLKRRAKRAVA IS RR SMGG  + KPER LDGID+R
Sbjct: 195 ILERPEGNHNG--TSTMTLIEKKLKRRAKRAVAKISGRRVSMGG-AVQKPERSLDGIDVR 251

Query: 255 CKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFA 314
           CKVVDFGNAC A+KQFAEEIQTRQYRAPEVILR+GYSFSVDMWSFACTAFELATGDMLFA
Sbjct: 252 CKVVDFGNACWADKQFAEEIQTRQYRAPEVILRSGYSFSVDMWSFACTAFELATGDMLFA 311

Query: 315 PKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLL 374
           PK GQ + EDEDHLALMMEL+GKMPRKIAIGGA SKDYFDRHGDLKRIRRLKFW LDRLL
Sbjct: 312 PKDGQDYSEDEDHLALMMELLGKMPRKIAIGGALSKDYFDRHGDLKRIRRLKFWPLDRLL 371

Query: 375 VDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEKV 434
           V+KY+FSE DAREFAEFL PL DFTPEKRPTAQQCLQHPWL+L++ST++ETK++S V K+
Sbjct: 372 VEKYKFSENDAREFAEFLCPLFDFTPEKRPTAQQCLQHPWLNLKSSTQNETKSESKVAKL 431

Query: 435 DVGMSKLEIKVGK 447
            VG+S L  KVGK
Sbjct: 432 GVGVSNL--KVGK 442

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438452|ref|XP_002277212.1| PREDICTED: serine/threonine-protein kinase SRPK2 [Vitis vinifera] gi|296082557|emb|CBI21562.3| unnamed protein product [Vitis vinifera]

 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/433 (82%), Positives = 397/433 (91%), Gaps = 3/433 (0%)

Query: 15  GIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ 74
           G DSYRKGGYHAVRVGD F+GGRYIAQRKLGWG+FS VWLAYDTR+S YVALKIQKSA Q
Sbjct: 15  GTDSYRKGGYHAVRVGDPFSGGRYIAQRKLGWGEFSTVWLAYDTRSSKYVALKIQKSAVQ 74

Query: 75  FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKY 134
           FAQAALHEIEVLSA+A+GDPSN KCV+RLIDHFKH GPNGQH+CMVLEFLGDS+LRLIKY
Sbjct: 75  FAQAALHEIEVLSAIANGDPSNSKCVVRLIDHFKHTGPNGQHVCMVLEFLGDSILRLIKY 134

Query: 135 SRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP 194
           +RYKGLE NKVREICK ILTGLDY+HRELGIIHTDLKPENILL STIDP+KDPIRSGLTP
Sbjct: 135 NRYKGLEFNKVREICKCILTGLDYMHRELGIIHTDLKPENILLFSTIDPAKDPIRSGLTP 194

Query: 195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMR 254
           ILERPEG+  GG   T+  +EKKLK RA+RAVA IS +RASMGG E PK ER LDGID+R
Sbjct: 195 ILERPEGNPTGG--VTINSIEKKLKARARRAVAKISGKRASMGG-ETPKAERSLDGIDVR 251

Query: 255 CKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFA 314
           CK+VDFGNAC A++QF  EIQTRQYRAPEV+L+AGYS SVDMWSFACTAFELATGDMLFA
Sbjct: 252 CKIVDFGNACWADRQFTGEIQTRQYRAPEVVLQAGYSTSVDMWSFACTAFELATGDMLFA 311

Query: 315 PKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLL 374
           PK+GQG+ EDEDHLALMMEL+GK+PRK+AIGGA+SKD FDRHGDLKRIRRLKFW LDR+L
Sbjct: 312 PKNGQGYSEDEDHLALMMELLGKIPRKVAIGGARSKDLFDRHGDLKRIRRLKFWPLDRIL 371

Query: 375 VDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEKV 434
           VD+Y+FSE+DAREFA+FLVPLLDF PEKRPTAQQCLQHPWL+L N   +ETK+KSN+EK+
Sbjct: 372 VDRYKFSESDAREFADFLVPLLDFAPEKRPTAQQCLQHPWLNLTNLAANETKSKSNMEKL 431

Query: 435 DVGMSKLEIKVGK 447
           DVGMSKL+I+VGK
Sbjct: 432 DVGMSKLQIEVGK 444

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561431|ref|XP_002521726.1| srpk, putative [Ricinus communis] gi|223539117|gb|EEF40713.1| srpk, putative [Ricinus communis]

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/431 (81%), Positives = 393/431 (91%), Gaps = 3/431 (0%)

Query: 16  IDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQF 75
           IDSYRKGGYHAVRVGD F+GGRYIAQRKLGWGQFS VWLAYDT +S +VALKIQKSA QF
Sbjct: 17  IDSYRKGGYHAVRVGDQFSGGRYIAQRKLGWGQFSTVWLAYDTLSSDFVALKIQKSATQF 76

Query: 76  AQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYS 135
           AQAALHEIE+LSA+A+GDPSN KCV+RLIDHFKH GPNGQH CMVLEFLGDSLLRLI+YS
Sbjct: 77  AQAALHEIELLSAIANGDPSNSKCVVRLIDHFKHTGPNGQHHCMVLEFLGDSLLRLIRYS 136

Query: 136 RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI 195
           RYKGL  NKVREICK IL GLDYLHRELG+IH+DLKPENILL STIDP+KDPIRSGLTPI
Sbjct: 137 RYKGLPFNKVREICKCILIGLDYLHRELGLIHSDLKPENILLFSTIDPAKDPIRSGLTPI 196

Query: 196 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRC 255
           LERPEGS+NGG  +TM ++E+KLKRRAKRAVA IS RRASMGG  + K E+CLDG+D+RC
Sbjct: 197 LERPEGSLNGG--ATMNLIERKLKRRAKRAVAKISERRASMGG-AMTKQEKCLDGVDVRC 253

Query: 256 KVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAP 315
           K+VDFGNAC A+KQFAEEIQTRQYRAPEV+L++GYSF VDMWSFACTAFELATGDM+FAP
Sbjct: 254 KIVDFGNACWADKQFAEEIQTRQYRAPEVVLQSGYSFPVDMWSFACTAFELATGDMMFAP 313

Query: 316 KSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLV 375
           K GQGF EDEDHLALMMEL+GKMPRKIAIGGA SKD+FDR+GDLKRIRRLKFW LDRLLV
Sbjct: 314 KGGQGFSEDEDHLALMMELLGKMPRKIAIGGANSKDFFDRYGDLKRIRRLKFWPLDRLLV 373

Query: 376 DKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEKVD 435
           DKY+FSE DA+EFAEFL PLLDF PEKRPTAQQCLQHPWL+LR+ST+ +  N+++V K+ 
Sbjct: 374 DKYKFSENDAKEFAEFLCPLLDFVPEKRPTAQQCLQHPWLNLRSSTQTQMGNEADVGKLQ 433

Query: 436 VGMSKLEIKVG 446
           VG+S L++ VG
Sbjct: 434 VGVSNLQLTVG 444

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147806137|emb|CAN70006.1| hypothetical protein VITISV_038749 [Vitis vinifera]

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/433 (81%), Positives = 393/433 (90%), Gaps = 5/433 (1%)

Query: 15  GIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ 74
           G DSYRKGGYHAVRVGD F+GGRYI QRKLGWG+FS VWLAYDTR+S YVALKIQKSA Q
Sbjct: 15  GTDSYRKGGYHAVRVGDPFSGGRYIXQRKLGWGEFSTVWLAYDTRSSKYVALKIQKSAVQ 74

Query: 75  FAQAALHEIEVLSAVADGDPSNEKCV--IRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLI 132
           FAQAALHEIEVLSA+A+GDPSN KCV  +RLIDHFKH GPNGQH+CMVLEFLGDS+LRLI
Sbjct: 75  FAQAALHEIEVLSAIANGDPSNSKCVCVVRLIDHFKHTGPNGQHVCMVLEFLGDSILRLI 134

Query: 133 KYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL 192
           KY+RYKGLE NKVREICK ILTGLDY+HRELGIIHTDLKPENILL STIDP+KDPIRSGL
Sbjct: 135 KYNRYKGLEFNKVREICKCILTGLDYMHRELGIIHTDLKPENILLFSTIDPAKDPIRSGL 194

Query: 193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGID 252
           TPILERPEG+  GG T  +  +EKKLK RA+RAVA IS +RASMGG E PK ER LDGID
Sbjct: 195 TPILERPEGNPTGGVT--INSIEKKLKARARRAVAKISGKRASMGG-ETPKAERSLDGID 251

Query: 253 MRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDML 312
           +RCK+VDFGNAC A++QF  EIQTRQYRAPEV+L+AGYS SVDMWSFACTAFELATGDML
Sbjct: 252 VRCKIVDFGNACWADRQFTGEIQTRQYRAPEVVLQAGYSTSVDMWSFACTAFELATGDML 311

Query: 313 FAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDR 372
           FAPK+GQG+ EDEDHLALMMEL+GK+PRK+AIGGA+SKD FDRHGDLKRIRRLKFW LDR
Sbjct: 312 FAPKNGQGYSEDEDHLALMMELLGKIPRKVAIGGARSKDLFDRHGDLKRIRRLKFWPLDR 371

Query: 373 LLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVE 432
           +LVD+Y+FSE+DAREFA+FLVPLLDF PEKRPTAQQCLQHPWL+L N   +ETK+KSN+E
Sbjct: 372 ILVDRYKFSESDAREFADFLVPLLDFAPEKRPTAQQCLQHPWLNLTNLAANETKSKSNME 431

Query: 433 KVDVGMSKLEIKV 445
           K+DVGMSKL+I+ 
Sbjct: 432 KLDVGMSKLQIEA 444

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531335|ref|XP_003534233.1| PREDICTED: serine/threonine-protein kinase SRPK1-like isoform 1 [Glycine max]

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/447 (80%), Positives = 396/447 (88%), Gaps = 2/447 (0%)

Query: 1   MSCSSSSGSEDDDEGIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRT 60
           MSCSSSSGSE+DDEG DSYRKGGYHAVRV D F GGRYIAQRKLGWGQFS VWLAYDT T
Sbjct: 1   MSCSSSSGSEEDDEGFDSYRKGGYHAVRVADQFAGGRYIAQRKLGWGQFSTVWLAYDTTT 60

Query: 61  SSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMV 120
           S+YVALKIQKSAAQF QAALHEI+VL++++DG   + KCV+ LIDHFKH GPNGQHLCMV
Sbjct: 61  SAYVALKIQKSAAQFVQAALHEIDVLTSLSDGADMDSKCVVHLIDHFKHTGPNGQHLCMV 120

Query: 121 LEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVST 180
           LEFLGDSLLRLIKY+RYKGL LNKVREICK IL GLDYLHRE GIIH+DLKPEN+LLVST
Sbjct: 121 LEFLGDSLLRLIKYNRYKGLPLNKVREICKCILIGLDYLHREHGIIHSDLKPENVLLVST 180

Query: 181 IDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIE 240
           IDP KDP+RSGLTPILERPEGSINGG  +++  +EKKLKRRA+RAVA IS R + +GGIE
Sbjct: 181 IDPGKDPVRSGLTPILERPEGSINGGGVTSL--IEKKLKRRARRAVAKISGRSSPIGGIE 238

Query: 241 LPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
            PK ER LDGID+RCKVVDFGNAC A+KQFAEEIQTRQYRAPEVIL AGYSFSVDMWSFA
Sbjct: 239 APKSERNLDGIDVRCKVVDFGNACWADKQFAEEIQTRQYRAPEVILHAGYSFSVDMWSFA 298

Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
           C AFELATGDMLF PK GQGF EDEDHLALMMEL+GKMPRK+A  GA+SKD+FDRHGDL+
Sbjct: 299 CIAFELATGDMLFTPKDGQGFSEDEDHLALMMELLGKMPRKVATSGAKSKDFFDRHGDLR 358

Query: 361 RIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS 420
           RIRRLKFW L +LLV +Y+FSE DA EF+EFL PLLDF PEKRPTAQQCLQHPWL    S
Sbjct: 359 RIRRLKFWPLSKLLVVRYKFSERDAHEFSEFLSPLLDFAPEKRPTAQQCLQHPWLQGIES 418

Query: 421 TRDETKNKSNVEKVDVGMSKLEIKVGK 447
           T +E +N+S+VEKVDVGMS L+IKVGK
Sbjct: 419 TPNEMRNESSVEKVDVGMSNLQIKVGK 445

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434086|ref|XP_004134827.1| PREDICTED: SRSF protein kinase 1-like [Cucumis sativus] gi|449491257|ref|XP_004158842.1| PREDICTED: SRSF protein kinase 1-like [Cucumis sativus]

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/433 (79%), Positives = 386/433 (89%), Gaps = 4/433 (0%)

Query: 16  IDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQF 75
           IDSYRKGGYHAVR+ D F GGRY+AQRKLGWGQFS VWLAYDTRTS YV+LKIQKSA QF
Sbjct: 15  IDSYRKGGYHAVRIADHFAGGRYVAQRKLGWGQFSTVWLAYDTRTSKYVSLKIQKSAPQF 74

Query: 76  AQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYS 135
           A+AALHEIEVLS ++D DPS+ KC+++LIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKY+
Sbjct: 75  AEAALHEIEVLSVISDSDPSSSKCIVQLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYN 134

Query: 136 RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI 195
           RY+ LELNKVREICK IL  LDYLHREL IIHTDLKPENILL+STIDP+KDP+RSG  PI
Sbjct: 135 RYRVLELNKVREICKCILVALDYLHRELNIIHTDLKPENILLLSTIDPTKDPVRSGQAPI 194

Query: 196 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPE-RCLDGIDMR 254
           LERPEG+ NGG+T  M ++EKKLKRRA+RAV+ IS RR SMGG   PKPE R LDGID+R
Sbjct: 195 LERPEGNPNGGTT--MNLIEKKLKRRARRAVSRISERRVSMGGAT-PKPEDRKLDGIDLR 251

Query: 255 CKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFA 314
           CK+VDFGNAC A++QF EEIQTRQYRAPEVIL++GYS+SVDMWSF C AFELATGDM+F 
Sbjct: 252 CKIVDFGNACWADRQFMEEIQTRQYRAPEVILQSGYSYSVDMWSFGCIAFELATGDMMFT 311

Query: 315 PKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLL 374
           PK GQ + EDEDHLALMMEL+GKMPRKIAIGGA+SKDYFDRHGDLKRIRRLKFWSLDRLL
Sbjct: 312 PKGGQDYSEDEDHLALMMELLGKMPRKIAIGGARSKDYFDRHGDLKRIRRLKFWSLDRLL 371

Query: 375 VDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEKV 434
           V+KY+F+E DA+ FAEFL  +LDF PEKRPTAQQCLQHPWL+ RN  + E KNK+ VEKV
Sbjct: 372 VEKYKFTEADAQSFAEFLSLVLDFAPEKRPTAQQCLQHPWLNPRNLPQTEMKNKTEVEKV 431

Query: 435 DVGMSKLEIKVGK 447
           +VGMSKL+I+VGK
Sbjct: 432 NVGMSKLQIRVGK 444

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559181|ref|XP_003547879.1| PREDICTED: serine/threonine-protein kinase SRPK1-like [Glycine max]

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/433 (79%), Positives = 384/433 (88%), Gaps = 2/433 (0%)

Query: 15  GIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ 74
           G DSYRKGGYHAVRV D F GGRYIAQRKLGWGQFS VWLAYDT TS+YVALKIQKSAAQ
Sbjct: 15  GFDSYRKGGYHAVRVADQFAGGRYIAQRKLGWGQFSTVWLAYDTTTSAYVALKIQKSAAQ 74

Query: 75  FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKY 134
           F QAALHEI+VLS++ADG   + KCV+ LIDHFKH GPNGQHLCMVLEFLGDSLLRLIKY
Sbjct: 75  FVQAALHEIDVLSSLADGVDMDSKCVVHLIDHFKHTGPNGQHLCMVLEFLGDSLLRLIKY 134

Query: 135 SRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP 194
           +RYKGL L+KVREICK IL GLDYLHRE GIIH+DLKPEN+LLVSTIDP+KDP+RSGLTP
Sbjct: 135 NRYKGLPLDKVREICKCILIGLDYLHREHGIIHSDLKPENVLLVSTIDPAKDPVRSGLTP 194

Query: 195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMR 254
           ILERPEG+INGG  +++  +EKKLKRRA+RAVA IS R + +GGIE PK +R LDGID+R
Sbjct: 195 ILERPEGNINGGGVTSL--IEKKLKRRARRAVAKISGRSSPIGGIEAPKSDRNLDGIDVR 252

Query: 255 CKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFA 314
           CKVVDFGNAC A+KQFAEEIQTRQYRAPEVIL+AGYSF+VDMWSFAC AFELATGDMLF 
Sbjct: 253 CKVVDFGNACWADKQFAEEIQTRQYRAPEVILQAGYSFAVDMWSFACIAFELATGDMLFT 312

Query: 315 PKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLL 374
           PK GQGF EDEDHLALMMEL+GKMPRK+A  GA+SKD+FDRHGDLKRIRRLKFW L +LL
Sbjct: 313 PKVGQGFSEDEDHLALMMELLGKMPRKVATSGAKSKDFFDRHGDLKRIRRLKFWPLSKLL 372

Query: 375 VDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEKV 434
           +D+Y+FSE DA EF+EFL+PLLDF PEKRPTAQQCLQ PWL    ST +E +N+S+VEKV
Sbjct: 373 IDRYKFSERDACEFSEFLLPLLDFAPEKRPTAQQCLQLPWLQGIESTPNEMRNESSVEKV 432

Query: 435 DVGMSKLEIKVGK 447
            VGMS L+IKVGK
Sbjct: 433 GVGMSNLQIKVGK 445

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496553|ref|XP_003517131.1| PREDICTED: probable serine/threonine-protein kinase sky1-like [Glycine max]

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/433 (78%), Positives = 380/433 (87%), Gaps = 4/433 (0%)

Query: 16  IDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQF 75
            DSYRKGGYHAVRV D F  GRYIAQRKLGWGQFS VWLAYDT+T SYVALKIQKSAAQF
Sbjct: 16  FDSYRKGGYHAVRVADQFAAGRYIAQRKLGWGQFSTVWLAYDTKTESYVALKIQKSAAQF 75

Query: 76  AQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYS 135
           AQAALHEIE+LS++AD +P+N K VI+LIDHFKH GPNGQHLCMVLEFLGDSLLRLI+Y+
Sbjct: 76  AQAALHEIELLSSIADHNPTNSKFVIQLIDHFKHTGPNGQHLCMVLEFLGDSLLRLIRYN 135

Query: 136 RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI 195
           RYKGL LNKVREICK +LTGLDYLH + G+IHTDLKPENILL STIDP+KDP+RSGL+PI
Sbjct: 136 RYKGLPLNKVREICKCVLTGLDYLHTDRGMIHTDLKPENILLCSTIDPAKDPLRSGLSPI 195

Query: 196 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGI-ELPKPERCLDGIDMR 254
           LERPEG+ NGG TS   ++EK+L+RRA+ AVA IS RRASMGGI +  K  R +DGID+R
Sbjct: 196 LERPEGNTNGGVTS---LIEKRLRRRARTAVAKISGRRASMGGIGDAAKTGRNIDGIDVR 252

Query: 255 CKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFA 314
           CK+VDFGNAC A+KQFAEEIQTRQYRAPEVIL+AGYSFSVDMWS AC AFELATGDMLF 
Sbjct: 253 CKIVDFGNACWADKQFAEEIQTRQYRAPEVILKAGYSFSVDMWSLACIAFELATGDMLFT 312

Query: 315 PKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLL 374
           PK GQGF EDEDHLALMMEL+GKMPRKIA GGAQSKD+FDRHGDLKRIRRLKF  LD+LL
Sbjct: 313 PKGGQGFSEDEDHLALMMELLGKMPRKIATGGAQSKDFFDRHGDLKRIRRLKFCPLDKLL 372

Query: 375 VDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEKV 434
            DKY+FS  DA+EF+EFL+PL DF PEKRPTA+QCLQHPWL+   S  +E +N+S VEKV
Sbjct: 373 TDKYKFSVNDAQEFSEFLLPLFDFAPEKRPTARQCLQHPWLNYMESPPNEMRNESAVEKV 432

Query: 435 DVGMSKLEIKVGK 447
           DVGMS L+I+V K
Sbjct: 433 DVGMSNLKIRVEK 445

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484167|ref|XP_003612370.1| Serine/threonine protein kinase SRPK1 [Medicago truncatula] gi|355513705|gb|AES95328.1| Serine/threonine protein kinase SRPK1 [Medicago truncatula]

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/449 (78%), Positives = 391/449 (87%), Gaps = 5/449 (1%)

Query: 1   MSCSSSSGSEDDDEGIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRT 60
           MSCSSSSGSE+DDEG +SYRKGGYHAVRV D F GGRYIAQRKLGWGQFS VWLAYDT T
Sbjct: 1   MSCSSSSGSEEDDEGFESYRKGGYHAVRVADQFAGGRYIAQRKLGWGQFSTVWLAYDTTT 60

Query: 61  SSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMV 120
           SSYVALKIQKSAA+F QAALHEI VLS++ADGDPSN K V++LID+FKH GPNGQH CMV
Sbjct: 61  SSYVALKIQKSAAEFVQAALHEINVLSSIADGDPSNSKFVVQLIDNFKHTGPNGQHHCMV 120

Query: 121 LEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVST 180
           LEFLGDSLLRLIKYS YKGL LNKVREICKYIL GLDYLH ELGIIHTDLKPENILL ST
Sbjct: 121 LEFLGDSLLRLIKYSHYKGLPLNKVREICKYILIGLDYLHSELGIIHTDLKPENILLFST 180

Query: 181 IDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGI- 239
           IDPSKDP RSGL+P LER EG+ NGG TS   ++EK+LKRRAKRAVA IS R AS+ G  
Sbjct: 181 IDPSKDPFRSGLSPTLERTEGNTNGGLTS---LIEKRLKRRAKRAVAKISGRTASIEGRG 237

Query: 240 ELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSF 299
           E  K  R ++GIDMRCK+VDFGNAC A+ +FAEEIQTRQYRAPEVIL++GYSFSVDMWSF
Sbjct: 238 EAAKSSRNIEGIDMRCKIVDFGNACWADNKFAEEIQTRQYRAPEVILKSGYSFSVDMWSF 297

Query: 300 ACTAFELATGDMLFAPK-SGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
           AC AFELATGDMLF PK  GQG+ EDEDHLALMMEL+GKMPRKIAIGGAQSKDYFDRHGD
Sbjct: 298 ACIAFELATGDMLFTPKGGGQGYSEDEDHLALMMELLGKMPRKIAIGGAQSKDYFDRHGD 357

Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
           LKRIRRLKF  LD+LL+D+Y+FS  DA+EF+EFL+PL DF PEKRPTA+Q LQHPWL+  
Sbjct: 358 LKRIRRLKFCPLDKLLIDRYKFSANDAQEFSEFLLPLFDFAPEKRPTARQYLQHPWLNCN 417

Query: 419 NSTRDETKNKSNVEKVDVGMSKLEIKVGK 447
            S  +E +++S VEKV+VGMS L+IKVGK
Sbjct: 418 ESAPNEMRSESTVEKVNVGMSNLQIKVGK 446

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	447
TAIR|locus:2053938	440	AT2G17530 [Arabidopsis thalian	0.930	0.945	0.768	1.6e-175
TAIR|locus:2127903	439	AT4G35500 [Arabidopsis thalian	0.932	0.949	0.734	1.2e-166
TAIR|locus:2085151	529	SRPK4 "ser/arg-rich protein ki	0.398	0.336	0.640	2.7e-128
TAIR|locus:2172651	538	AT5G22840 [Arabidopsis thalian	0.398	0.330	0.646	1.2e-125
TAIR|locus:2082107	534	AT3G44850 [Arabidopsis thalian	0.398	0.333	0.634	1e-124
UNIPROTKB|B4DS61	639	SRPK1 "SFRS protein kinase 1,	0.407	0.284	0.5	1e-92
UNIPROTKB|H3BLV9	671	SRPK1 "SRSF protein kinase 1"	0.407	0.271	0.5	1e-92
UNIPROTKB|Q96SB4	655	SRPK1 "SRSF protein kinase 1"	0.407	0.277	0.5	1e-92
UNIPROTKB|Q5RD27	655	SRPK1 "SRSF protein kinase 1"	0.407	0.277	0.5	1e-92
UNIPROTKB|B7UCT2	655	SRPK1 "SFRS protein kinase 1"	0.366	0.250	0.530	2.7e-92

TAIR|locus:2053938 AT2G17530 [Arabidopsis thaliana (taxid:3702)]

 Score = 1705 (605.2 bits), Expect = 1.6e-175, P = 1.6e-175
 Identities = 329/428 (76%), Positives = 367/428 (85%)

Query:    19 YRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQA 78
             YRKGGYHAVR+GD F GGRYIAQRKLGWGQFS VWLAYDTRTS+YVALKIQKSA QFAQA
Sbjct:    19 YRKGGYHAVRIGDQFAGGRYIAQRKLGWGQFSTVWLAYDTRTSNYVALKIQKSALQFAQA 78

Query:    79 ALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYK 138
             ALHEIE+L A ADGDP N KCVIRLID FKHAGPNGQHLCMVLEFLGDSLLRLIKY+RYK
Sbjct:    79 ALHEIELLQAAADGDPENTKCVIRLIDDFKHAGPNGQHLCMVLEFLGDSLLRLIKYNRYK 138

Query:   139 GLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER 198
             G+EL+KVREICK ILTGLDYLHRELG+IH+DLKPENILL STIDP+KDPIRSGLTPILE+
Sbjct:   139 GMELSKVREICKCILTGLDYLHRELGMIHSDLKPENILLCSTIDPAKDPIRSGLTPILEK 198

Query:   199 PEGSINGGSTSTMTIVEXXXXXXXXXXXXNISIRRASMGGI-ELPKP-ERCLDGIDMRCK 256
             PEG+ NG  TSTM ++E             IS RR S+ G+ E PK  +R LDGIDMRCK
Sbjct:   199 PEGNQNG--TSTMNLIEKKLKRRAKKAAAKISGRRVSIVGLSETPKKNKRNLDGIDMRCK 256

Query:   257 VVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPK 316
             VVDFGN C A+ +FAEEIQTRQYRAPEVIL++GYS+SVDMWSFACTAFELATGDMLFAPK
Sbjct:   257 VVDFGNGCWADNKFAEEIQTRQYRAPEVILQSGYSYSVDMWSFACTAFELATGDMLFAPK 316

Query:   317 SGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVD 376
              G G+ EDEDHLALMMEL+GKMPRKIAIGGA+SKDYFDRHGDLKRIRRLK+W LDRLL+D
Sbjct:   317 EGNGYGEDEDHLALMMELLGKMPRKIAIGGARSKDYFDRHGDLKRIRRLKYWPLDRLLID 376

Query:   377 KYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEKVDV 436
             KY+  E +AREFA+FL P++DF PEKRPTAQQCLQHPWL+LR      T+N  N + ++ 
Sbjct:   377 KYKLPEAEAREFADFLCPIMDFAPEKRPTAQQCLQHPWLNLR------TQN--NEDDIEG 428

Query:   437 GMSKLEIK 444
              MS ++IK
Sbjct:   429 QMSNMQIK 436

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2127903 AT4G35500 [Arabidopsis thaliana (taxid:3702)]

 Score = 1621 (575.7 bits), Expect = 1.2e-166, P = 1.2e-166
 Identities = 315/429 (73%), Positives = 356/429 (82%)

Query:    19 YRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYV-ALKIQKSAAQFAQ 77
             YRKGGYHAVR+GD F+GGRYIAQRKLGWGQFS VWLAYDT TS+ +  + +   A QFAQ
Sbjct:    19 YRKGGYHAVRIGDPFSGGRYIAQRKLGWGQFSTVWLAYDTLTSNVLLCMFLCLFAQQFAQ 78

Query:    78 AALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRY 137
             AALHEIE LSA ADGD    KCV+RLIDHFKH+GPNGQHLCMVLEFLGDSLLRLI+Y++Y
Sbjct:    79 AALHEIEFLSAAADGDLDKTKCVVRLIDHFKHSGPNGQHLCMVLEFLGDSLLRLIRYNQY 138

Query:   138 KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE 197
             KGL+LNKVREIC+ ILTGLDYLHRELG+IH+DLKPENILL STIDP+KDP+RSGLTP+LE
Sbjct:   139 KGLKLNKVREICRCILTGLDYLHRELGMIHSDLKPENILLCSTIDPAKDPVRSGLTPLLE 198

Query:   198 RPEGSINGGSTSTMTIVEXXXXXXXXXXXXNISIRRASM-GGIELP-KPERCLDGIDMRC 255
             +PEG+ NGG+ STM ++E             IS RR SM  G E   K E+ LDGIDMRC
Sbjct:   199 KPEGNANGGA-STMNLIEKKLKRRAKRAVAKISERRVSMVTGEEASSKTEKSLDGIDMRC 257

Query:   256 KVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAP 315
             KVVDFGNAC A+KQFAEEIQTRQYRAPEVIL++GYSFSVDMWSF CTAFEL TGDMLFAP
Sbjct:   258 KVVDFGNACWADKQFAEEIQTRQYRAPEVILKSGYSFSVDMWSFGCTAFELVTGDMLFAP 317

Query:   316 KSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLV 375
             K G G+ EDEDHLALMMEL+GKMPRKIAIGGA+SKDYFDRHGDLKRIRRLK+W LDRLL+
Sbjct:   318 KDGNGYGEDEDHLALMMELLGKMPRKIAIGGAKSKDYFDRHGDLKRIRRLKYWPLDRLLI 377

Query:   376 DKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEKVD 435
             DKY+  E +A+EFAEFL P+L+F PEKRPTAQQCL HPW+   N T   T+N  + E VD
Sbjct:   378 DKYKLPEAEAKEFAEFLTPILEFAPEKRPTAQQCLDHPWM---NVT---TQN--DAENVD 429

Query:   436 VGMSKLEIK 444
               M+ L IK
Sbjct:   430 DQMNNLHIK 438

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2085151 SRPK4 "ser/arg-rich protein kinase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 652 (234.6 bits), Expect = 2.7e-128, Sum P(2) = 2.7e-128
 Identities = 114/178 (64%), Positives = 146/178 (82%)

Query:    19 YRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQA 78
             YR+GGYHAVR+GD F  GRY+ Q KLGWG FS VWL++DT++S YVALK+QKSA  + +A
Sbjct:    23 YRRGGYHAVRIGDSFKTGRYVVQSKLGWGHFSTVWLSWDTQSSRYVALKVQKSAQHYTEA 82

Query:    79 ALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYK 138
             A+ EI +L  +A+GD  + KCV++L+DHFKH+GPNGQH+CMV E+LGD+LL LIKYS Y+
Sbjct:    83 AMDEITILQQIAEGDTDDTKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYR 142

Query:   139 GLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL 196
             GL +  V+EIC ++L GLDYLH++L IIHTDLKPEN+LL STIDPSKDP +SG   +L
Sbjct:   143 GLPIPMVKEICYHMLVGLDYLHKQLSIIHTDLKPENVLLPSTIDPSKDPRKSGAPLVL 200

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IDA

TAIR|locus:2172651 AT5G22840 [Arabidopsis thaliana (taxid:3702)]

 Score = 644 (231.8 bits), Expect = 1.2e-125, Sum P(2) = 1.2e-125
 Identities = 115/178 (64%), Positives = 143/178 (80%)

Query:    19 YRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQA 78
             YR+GGYH VRVGD F  G Y+ Q KLGWG FS VWLA+DT  S YVALKIQKSA  + +A
Sbjct:    26 YRRGGYHTVRVGDTFKNGSYVIQSKLGWGHFSTVWLAWDTLNSRYVALKIQKSAQHYTEA 85

Query:    79 ALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYK 138
             A+ EI++L  +A+GD  ++KCV++L+DHFKHAGPNGQH+CMV E+LGD+LL +IKYS Y+
Sbjct:    86 AMDEIKILKQIAEGDAEDKKCVVKLLDHFKHAGPNGQHVCMVFEYLGDNLLSVIKYSDYR 145

Query:   139 GLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL 196
             G+ L+ V+EIC +IL GLDYLHREL IIHTD+KPENILL STIDP  D  +SG+  +L
Sbjct:   146 GVPLHMVKEICFHILVGLDYLHRELSIIHTDIKPENILLCSTIDPEADARKSGIPLVL 203

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

TAIR|locus:2082107 AT3G44850 [Arabidopsis thaliana (taxid:3702)]

 Score = 646 (232.5 bits), Expect = 1.0e-124, Sum P(2) = 1.0e-124
 Identities = 113/178 (63%), Positives = 146/178 (82%)

Query:    19 YRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQA 78
             Y+KGGYH VRVGD F  G Y+ Q KLGWG FS VWLA+DT+ S YVALK+QKSA  + +A
Sbjct:    26 YKKGGYHTVRVGDTFKNGAYVIQSKLGWGHFSTVWLAWDTQESRYVALKVQKSAQHYTEA 85

Query:    79 ALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYK 138
             A+ EI++L  +A+GD  ++KCV++L+DHFKH GPNG+H+CMV E+LGD+LL +IKYS Y+
Sbjct:    86 AMDEIKILKQIAEGDSGDKKCVVKLLDHFKHTGPNGKHVCMVFEYLGDNLLSVIKYSDYR 145

Query:   139 GLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL 196
             G+ L+ V+E+C +IL GLDYLHREL IIHTDLKPEN+LL+STIDPS+D  RSG+  +L
Sbjct:   146 GVPLHMVKELCFHILVGLDYLHRELSIIHTDLKPENVLLLSTIDPSRDVRRSGVPLVL 203

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

UNIPROTKB|B4DS61 SRPK1 "SFRS protein kinase 1, isoform CRA_f" [Homo sapiens (taxid:9606)]

 Score = 503 (182.1 bits), Expect = 1.0e-92, Sum P(2) = 1.0e-92
 Identities = 91/182 (50%), Positives = 128/182 (70%)

Query:   235 SMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSV 294
             S  G  L  P    +   ++ K+ D GNAC  +K F E+IQTRQYR+ EV++ +GY+   
Sbjct:   457 STAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPA 516

Query:   295 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 354
             D+WS AC AFELATGD LF P SG+ +  DEDH+AL++EL+GK+PRK+ + G  SK++F 
Sbjct:   517 DIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFT 576

Query:   355 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
             + GDLK I +LK W L  +LV+KY +S+ +A  F +FL+P+L+  PEKR TA +CL+HPW
Sbjct:   577 KKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPW 636

Query:   415 LS 416
             L+
Sbjct:   637 LN 638

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|H3BLV9 SRPK1 "SRSF protein kinase 1" [Homo sapiens (taxid:9606)]

 Score = 503 (182.1 bits), Expect = 1.0e-92, Sum P(2) = 1.0e-92
 Identities = 91/182 (50%), Positives = 128/182 (70%)

Query:   235 SMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSV 294
             S  G  L  P    +   ++ K+ D GNAC  +K F E+IQTRQYR+ EV++ +GY+   
Sbjct:   489 STAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPA 548

Query:   295 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 354
             D+WS AC AFELATGD LF P SG+ +  DEDH+AL++EL+GK+PRK+ + G  SK++F 
Sbjct:   549 DIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFT 608

Query:   355 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
             + GDLK I +LK W L  +LV+KY +S+ +A  F +FL+P+L+  PEKR TA +CL+HPW
Sbjct:   609 KKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPW 668

Query:   415 LS 416
             L+
Sbjct:   669 LN 670

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q96SB4 SRPK1 "SRSF protein kinase 1" [Homo sapiens (taxid:9606)]

 Score = 503 (182.1 bits), Expect = 1.0e-92, Sum P(2) = 1.0e-92
 Identities = 91/182 (50%), Positives = 128/182 (70%)

Query:   235 SMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSV 294
             S  G  L  P    +   ++ K+ D GNAC  +K F E+IQTRQYR+ EV++ +GY+   
Sbjct:   473 STAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPA 532

Query:   295 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 354
             D+WS AC AFELATGD LF P SG+ +  DEDH+AL++EL+GK+PRK+ + G  SK++F 
Sbjct:   533 DIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFT 592

Query:   355 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
             + GDLK I +LK W L  +LV+KY +S+ +A  F +FL+P+L+  PEKR TA +CL+HPW
Sbjct:   593 KKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPW 652

Query:   415 LS 416
             L+
Sbjct:   653 LN 654

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0007243 "intracellular protein kinase cascade" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0050684 "regulation of mRNA processing" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007059 "chromosome segregation" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0048024 "regulation of mRNA splicing, via spliceosome" evidence=TAS

GO:0035092 "sperm chromatin condensation" evidence=TAS

GO:0004672 "protein kinase activity" evidence=TAS

GO:0045087 "innate immune response" evidence=IC

GO:0045071 "negative regulation of viral genome replication" evidence=IDA

GO:0045070 "positive regulation of viral genome replication" evidence=IDA

UNIPROTKB|Q5RD27 SRPK1 "SRSF protein kinase 1" [Pongo abelii (taxid:9601)]

 Score = 503 (182.1 bits), Expect = 1.0e-92, Sum P(2) = 1.0e-92
 Identities = 91/182 (50%), Positives = 128/182 (70%)

Query:   235 SMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSV 294
             S  G  L  P    +   ++ K+ D GNAC  +K F E+IQTRQYR+ EV++ +GY+   
Sbjct:   473 STAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPA 532

Query:   295 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 354
             D+WS AC AFELATGD LF P SG+ +  DEDH+AL++EL+GK+PRK+ + G  SK++F 
Sbjct:   533 DIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFT 592

Query:   355 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
             + GDLK I +LK W L  +LV+KY +S+ +A  F +FL+P+L+  PEKR TA +CL+HPW
Sbjct:   593 KKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPW 652

Query:   415 LS 416
             L+
Sbjct:   653 LN 654

GO:0000287 "magnesium ion binding" evidence=ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0007243 "intracellular protein kinase cascade" evidence=ISS

GO:0050684 "regulation of mRNA processing" evidence=ISS

UNIPROTKB|B7UCT2 SRPK1 "SFRS protein kinase 1" [Sus scrofa (taxid:9823)]

 Score = 499 (180.7 bits), Expect = 2.7e-92, Sum P(2) = 2.7e-92
 Identities = 87/164 (53%), Positives = 122/164 (74%)

Query:   253 MRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDML 312
             ++ K+ D GNAC  +K F E+IQTRQYR+ EV++ +GY+   D+WS AC AFELATGD L
Sbjct:   491 LQVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYL 550

Query:   313 FAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDR 372
             F P SG+ +  DEDH+AL++EL+GK+PRK+ + G  SK++F + GDLK I +LK W L  
Sbjct:   551 FEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFE 610

Query:   373 LLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
             +LV+KY +S+ +A  F +FL+P+L+  PEKR TA  CL+HPWL+
Sbjct:   611 VLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAADCLRHPWLN 654

GO:0050684 "regulation of mRNA processing" evidence=IEA

GO:0045071 "negative regulation of viral genome replication" evidence=IEA

GO:0045070 "positive regulation of viral genome replication" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	0.824
3rd Layer	2.7.11	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	447
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	7e-31
PTZ00284	467	PTZ00284, PTZ00284, protein kinase; Provisional	1e-30
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	1e-24
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	2e-24
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	4e-22
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	8e-21
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	1e-20
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	7e-20
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	2e-18
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	2e-18
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	8e-18
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	2e-17
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	2e-17
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	3e-17
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	5e-17
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	1e-16
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	2e-16
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	3e-16
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	4e-16
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	5e-16
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	1e-15
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	2e-15
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	3e-15
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	8e-15
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	1e-14
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	3e-14
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	3e-14
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	4e-14
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	5e-14
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	5e-14
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	9e-14
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	1e-13
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	2e-13
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	3e-13
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	3e-13
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	4e-13
cd05574	316	cd05574, STKc_phototropin_like, Catalytic domain o	5e-13
cd07848	287	cd07848, STKc_CDKL5, Catalytic domain of the Serin	6e-13
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	6e-13
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	8e-13
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	2e-12
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	2e-12
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	4e-12
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	4e-12
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	5e-12
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	5e-12
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	8e-12
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	2e-11
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	3e-11
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	4e-11
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	5e-11
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	5e-11
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	6e-11
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	6e-11
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	6e-11
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	1e-10
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	1e-10
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	1e-10
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	2e-10
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	2e-10
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	2e-10
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	2e-10
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	2e-10
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	2e-10
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	3e-10
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	3e-10
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	6e-10
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	7e-10
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	9e-10
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	9e-10
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	1e-09
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	2e-09
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	2e-09
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	2e-09
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	2e-09
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	3e-09
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	3e-09
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	4e-09
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	4e-09
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	4e-09
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	6e-09
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	6e-09
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	7e-09
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	7e-09
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	7e-09
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	7e-09
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	9e-09
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	1e-08
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	1e-08
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	1e-08
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	1e-08
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	2e-08
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	2e-08
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	2e-08
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	2e-08
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	2e-08
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	2e-08
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	3e-08
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	3e-08
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	4e-08
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	4e-08
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	4e-08
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	6e-08
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	6e-08
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	6e-08
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	7e-08
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	8e-08
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	8e-08
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	1e-07
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	1e-07
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	2e-07
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	2e-07
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	3e-07
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	3e-07
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	3e-07
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	4e-07
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	4e-07
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	4e-07
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	5e-07
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	6e-07
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	7e-07
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	9e-07
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	9e-07
cd05629	377	cd05629, STKc_NDR_like_fungal, Catalytic domain of	9e-07
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	9e-07
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	9e-07
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	1e-06
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	1e-06
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	1e-06
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	1e-06
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	1e-06
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	1e-06
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	2e-06
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	2e-06
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	2e-06
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	2e-06
PHA03212	391	PHA03212, PHA03212, serine/threonine kinase US3; P	2e-06
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	2e-06
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	2e-06
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	2e-06
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	3e-06
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	3e-06
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	3e-06
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	3e-06
PHA03207	392	PHA03207, PHA03207, serine/threonine kinase US3; P	3e-06
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	4e-06
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	4e-06
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	4e-06
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	5e-06
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	5e-06
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	5e-06
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	5e-06
cd05601	330	cd05601, STKc_CRIK, Catalytic domain of the Protei	5e-06
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	6e-06
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	6e-06
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	6e-06
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	6e-06
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	7e-06
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	7e-06
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	8e-06
cd06643	282	cd06643, STKc_SLK, Catalytic domain of the Protein	8e-06
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	9e-06
cd07869	303	cd07869, STKc_PFTAIRE1, Catalytic domain of the Se	9e-06
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	1e-05
cd08222	260	cd08222, STKc_Nek11, Catalytic domain of the Prote	1e-05
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	1e-05
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	1e-05
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	1e-05
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	1e-05
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	2e-05
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	2e-05
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	2e-05
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	2e-05
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	3e-05
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	3e-05
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	3e-05
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	3e-05
cd05609	305	cd05609, STKc_MAST, Catalytic domain of the Protei	3e-05
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	4e-05
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	4e-05
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	4e-05
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	4e-05
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	5e-05
cd06636	282	cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr	5e-05
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	5e-05
cd07868	317	cd07868, STKc_CDK8, Catalytic domain of the Serine	6e-05
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	7e-05
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	7e-05
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	8e-05
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	9e-05
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	9e-05
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	1e-04
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	1e-04
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	1e-04
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	1e-04
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	1e-04
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	1e-04
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	1e-04
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	1e-04
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	1e-04
cd05625	382	cd05625, STKc_LATS1, Catalytic domain of the Prote	1e-04
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	1e-04
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	1e-04
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	2e-04
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	2e-04
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	2e-04
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	2e-04
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	2e-04
PTZ00036	440	PTZ00036, PTZ00036, glycogen synthase kinase; Prov	2e-04
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	2e-04
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	2e-04
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	2e-04
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	3e-04
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	3e-04
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	3e-04
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	3e-04
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	3e-04
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	4e-04
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	5e-04
PLN03224	507	PLN03224, PLN03224, probable serine/threonine prot	5e-04
cd07870	291	cd07870, STKc_PFTAIRE2, Catalytic domain of the Se	5e-04
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	6e-04
cd07867	317	cd07867, STKc_CDC2L6, Catalytic domain of Serine/T	6e-04
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	7e-04
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	7e-04
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	7e-04
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	8e-04
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	9e-04
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	9e-04
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	0.001
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	0.001
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	0.001
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	0.001
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	0.001
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	0.001
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	0.001
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	0.001
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	0.001
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	0.001
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	0.001
PHA03211	461	PHA03211, PHA03211, serine/threonine kinase US3; P	0.001
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	0.001
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	0.001
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	0.001
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	0.002
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	0.002
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	0.002
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	0.002
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	0.002
cd05609	305	cd05609, STKc_MAST, Catalytic domain of the Protei	0.002
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	0.002
cd07870	291	cd07870, STKc_PFTAIRE2, Catalytic domain of the Se	0.002
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	0.002
cd05585	312	cd05585, STKc_YPK1_like, Catalytic domain of Yeast	0.002
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	0.002
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	0.002
cd05598	376	cd05598, STKc_LATS, Catalytic domain of the Protei	0.002
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	0.002
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	0.002
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	0.002
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	0.003
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	0.003
cd07869	303	cd07869, STKc_PFTAIRE1, Catalytic domain of the Se	0.003
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	0.003
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	0.003
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	0.003
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	0.003
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	0.003
cd06638	286	cd06638, STKc_myosinIIIA, Catalytic domain of the	0.003
cd06651	266	cd06651, STKc_MEKK3, Catalytic domain of the Prote	0.003
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	0.003
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	0.003
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	0.004
PTZ00266	1021	PTZ00266, PTZ00266, NIMA-related protein kinase; P	0.004
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	0.004
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	0.004
cd05628	363	cd05628, STKc_NDR1, Catalytic domain of the Protei	0.004
PHA02882	294	PHA02882, PHA02882, putative serine/threonine kina	0.004
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	0.004

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score =  119 bits (300), Expect = 7e-31
 Identities = 50/146 (34%), Positives = 73/146 (50%), Gaps = 16/146 (10%)

Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQK--SAAQFAQAALHEIEVLSAVADGDPS 95
           Y    KLG G F  V+LA D +T   VA+K+ K     +  +  L EI++L  +      
Sbjct: 1   YEILEKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKL------ 54

Query: 96  NEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILT 154
               ++RL D F+        L +V+E+  G  L  L+K  +   L  ++ R   + IL+
Sbjct: 55  KHPNIVRLYDVFED----EDKLYLVMEYCEGGDLFDLLK--KRGRLSEDEARFYLRQILS 108

Query: 155 GLDYLHRELGIIHTDLKPENILLVST 180
            L+YLH   GI+H DLKPENILL   
Sbjct: 109 ALEYLH-SKGIVHRDLKPENILLDED 133

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|140307 PTZ00284, PTZ00284, protein kinase; Provisional

 Score =  123 bits (309), Expect = 1e-30
 Identities = 98/394 (24%), Positives = 163/394 (41%), Gaps = 95/394 (24%)

Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPS 95
            R+     LG G F  V  A+D +   Y A+KI ++  ++ + A  EI+ +  V   DP+
Sbjct: 129 QRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPKYTRDAKIEIQFMEKVRQADPA 188

Query: 96  NEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTG 155
           +   ++++  +F++      H+C+V+   G  LL  I   ++       + +I       
Sbjct: 189 DRFPLMKIQRYFQN---ETGHMCIVMPKYGPCLLDWIM--KHGPFSHRHLAQIIFQTGVA 243

Query: 156 LDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVE 215
           LDY H EL ++HTDLKPENIL+  T D   DP+ +   P                     
Sbjct: 244 LDYFHTELHLMHTDLKPENILM-ETSDTVVDPVTNRALP--------------------- 281

Query: 216 KKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ 275
                                       P+ C      R ++ D G  C         + 
Sbjct: 282 ----------------------------PDPC------RVRICDLGGCCDERHSRTAIVS 307

Query: 276 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI 335
           TR YR+PEV+L  G+ +S DMWS  C  +EL TG +L+         ++ +HL LM + +
Sbjct: 308 TRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTH------DNLEHLHLMEKTL 361

Query: 336 GKMPRKIAI--GGAQSKDYFDRHGDLK------------RIRRLKFWSLDRLLVDKYRFS 381
           G++P + A   G  +++  ++  G L+            R R ++    D LL D     
Sbjct: 362 GRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPVREVIRDDLLCD----- 416

Query: 382 ETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
                     +  LL +  +KR  A+Q   HP++
Sbjct: 417 ---------LIYGLLHYDRQKRLNARQMTTHPYV 441

Length = 467

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score =  101 bits (255), Expect = 1e-24
 Identities = 48/175 (27%), Positives = 69/175 (39%), Gaps = 46/175 (26%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KPE  L   D   K+ DFG A + +  ++    + T +Y APEV+L  GY  +VD+WS  
Sbjct: 124 KPENILLDEDGHVKLADFGLARQLDPGEKLTTFVGTPEYMAPEVLLGKGYGKAVDIWSLG 183

Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
              +EL TG   F           +D L  + + IGK                       
Sbjct: 184 VILYELLTGKPPF---------PGDDQLLELFKKIGKPK--------------------- 213

Query: 361 RIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
                 F         ++  S     E  + +  LL   PEKR TA++ LQHP+ 
Sbjct: 214 ----PPFPP------PEWDISP----EAKDLIRKLLVKDPEKRLTAEEALQHPFF 254

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score =  100 bits (251), Expect = 2e-24
 Identities = 53/142 (37%), Positives = 76/142 (53%), Gaps = 15/142 (10%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKI--QKSAAQFAQAALHEIEVLSAVADGDPSNEKCVI 101
           LG G F  V+LA D +T   VA+KI  ++ ++   +  L EIE+L  +      N   ++
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKL------NHPNIV 54

Query: 102 RLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLH 160
           +L   F+    +  HL +V+E+  G SL  L+K      L  +++  I   IL GL+YLH
Sbjct: 55  KLYGVFE----DENHLYLVMEYCEGGSLKDLLK-ENEGKLSEDEILRILLQILEGLEYLH 109

Query: 161 RELGIIHTDLKPENILLVSTID 182
              GIIH DLKPENILL S   
Sbjct: 110 SN-GIIHRDLKPENILLDSDNG 130

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 94.6 bits (236), Expect = 4e-22
 Identities = 53/143 (37%), Positives = 74/143 (51%), Gaps = 17/143 (11%)

Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKI---QKSAAQFAQAALHEIEVLSAVADGDPSNEK 98
           RKLG G F  V+ A    T   VA+KI   +   ++  Q A  EI +L  +      +  
Sbjct: 5   RKLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRL------SHP 58

Query: 99  CVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLD 157
            ++RLID F+    +  HL +V+E+  G  L   +  SR   L  ++ ++I   IL GL+
Sbjct: 59  NIVRLIDAFE----DKDHLYLVMEYCEGGDLFDYL--SRGGPLSEDEAKKIALQILRGLE 112

Query: 158 YLHRELGIIHTDLKPENILLVST 180
           YLH   GIIH DLKPENILL   
Sbjct: 113 YLHSN-GIIHRDLKPENILLDEN 134

Length = 260

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 91.4 bits (228), Expect = 8e-21
 Identities = 54/181 (29%), Positives = 80/181 (44%), Gaps = 31/181 (17%)

Query: 243 KPERCLDGIDMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWSF 299
           KPE  L       K+ DFG A   R+   + + + TR YRAPE++LR+  YS  VD+W+ 
Sbjct: 126 KPENLLVSGPEVVKIADFGLAREIRSRPPYTDYVSTRWYRAPEILLRSTSYSSPVDIWAL 185

Query: 300 ACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDL 359
            C   EL T   LF   S      + D L  +  ++G  P         +K  +     L
Sbjct: 186 GCIMAELYTLRPLFPGSS------EIDQLYKICSVLGT-P---------TKQDWPEGYKL 229

Query: 360 KRIRRLKF-----WSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
                 +F      SL +L+ +          E  + +  +L + P+KRPTA Q LQHP+
Sbjct: 230 ASKLGFRFPQFAPTSLHQLIPNASP-------EAIDLIKDMLRWDPKKRPTASQALQHPY 282

Query: 415 L 415
            
Sbjct: 283 F 283

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 91.2 bits (227), Expect = 1e-20
 Identities = 49/182 (26%), Positives = 73/182 (40%), Gaps = 29/182 (15%)

Query: 243 KPERCLDGIDMRCKVVDFGNA----CRANKQFAEEIQTRQYRAPEVILRAG-YSFSVDMW 297
           KPE  L       K+ DFG A     R      + + TR YRAPE+++    Y   VD+W
Sbjct: 127 KPENILVSESGVLKLCDFGFARALRARPASPLTDYVATRWYRAPELLVGDTNYGKPVDVW 186

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           +  C   EL  G+ LF   S      D D L L+ + +G +P                H 
Sbjct: 187 AIGCIMAELLDGEPLFPGDS------DIDQLYLIQKCLGPLP--------------PSHQ 226

Query: 358 DL----KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP 413
           +L     R   + F    +    + R+    +    +FL   L   P++R T  + LQHP
Sbjct: 227 ELFSSNPRFAGVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQHP 286

Query: 414 WL 415
           + 
Sbjct: 287 YF 288

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 88.5 bits (220), Expect = 7e-20
 Identities = 46/177 (25%), Positives = 65/177 (36%), Gaps = 45/177 (25%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRA--NKQFAEEIQ-TRQYRAPEVILRA-GYSFSVDMWS 298
           KPE  L   +   K+ DFG A +   +         T  Y APEV+L   GY   VD+WS
Sbjct: 125 KPENILLDENGVVKIADFGLAKKLLKSSSSLTTFVGTPWYMAPEVLLGGNGYGPKVDVWS 184

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
                +EL TG   F+ +                                     +    
Sbjct: 185 LGVILYELLTGKPPFSGE-------------------------------------NILDQ 207

Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
           L+ IRR+    L   L        + + E  + +   L+  P KRPTA++ LQHPW 
Sbjct: 208 LQLIRRI----LGPPLEFDEPKWSSGSEEAKDLIKKCLNKDPSKRPTAEEILQHPWF 260

Length = 260

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 85.9 bits (211), Expect = 2e-18
 Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 11/142 (7%)

Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQK-SAAQFAQAALHEIEVLSAVADGDPSN 96
           Y   RKLG G F  V+LA D +  +   L  +  S ++  +  L EI++L+++     ++
Sbjct: 2   YRILRKLGEGSFGEVYLARDRKLVALKVLAKKLESKSKEVERFLREIQILASL-----NH 56

Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKG-LELNKVREICKYILTG 155
              +++L D F+     G    ++    G SL  L+K    KG L  ++   I   IL+ 
Sbjct: 57  PPNIVKLYDFFQD---EGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSA 113

Query: 156 LDYLHRELGIIHTDLKPENILL 177
           L+YLH   GIIH D+KPENILL
Sbjct: 114 LEYLH-SKGIIHRDIKPENILL 134

Length = 384

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 84.1 bits (209), Expect = 2e-18
 Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 15/140 (10%)

Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADGDPSNEK 98
             LG G F  V+LA D  T   +A+K   +   + +  +A   EI +LS++         
Sbjct: 6   ELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSL------QHP 59

Query: 99  CVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLD 157
            ++R     +    N   L + LE++ G SL  L+K  ++  L    +R+  + IL GL 
Sbjct: 60  NIVRYYGSERDEEKN--TLNIFLEYVSGGSLSSLLK--KFGKLPEPVIRKYTRQILEGLA 115

Query: 158 YLHRELGIIHTDLKPENILL 177
           YLH   GI+H D+K  NIL+
Sbjct: 116 YLHSN-GIVHRDIKGANILV 134

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 83.1 bits (206), Expect = 8e-18
 Identities = 47/146 (32%), Positives = 74/146 (50%), Gaps = 15/146 (10%)

Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ---FAQAALHEIEVLSAVADGDP 94
           Y    K+G G + +V+ A D  T   VA+K  K   +     + AL EI++L  +     
Sbjct: 1   YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKEL----- 55

Query: 95  SNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILT 154
            N   +I+L+D F+H       L +V EF+   L +LIK  +  GL  + ++     +L 
Sbjct: 56  -NHPNIIKLLDVFRH----KGDLYLVFEFMDTDLYKLIKDRQR-GLPESLIKSYLYQLLQ 109

Query: 155 GLDYLHRELGIIHTDLKPENILLVST 180
           GL + H   GI+H DLKPEN+L+ + 
Sbjct: 110 GLAFCHSH-GILHRDLKPENLLINTE 134

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 81.8 bits (203), Expect = 2e-17
 Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 19/151 (12%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADGD 93
           +Y   +++G G F  V+L           LK   +   + +  + AL+E+++L  +    
Sbjct: 1   KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKL---- 56

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKY- 151
             N   +I+  + F+        LC+V+E+  G  L + IK  + K  +     +I  + 
Sbjct: 57  --NHPNIIKYYESFEE----KGKLCIVMEYADGGDLSQKIK-KQKKEGKPFPEEQILDWF 109

Query: 152 --ILTGLDYLHRELGIIHTDLKPENILLVST 180
             +   L YLH    I+H D+KP+NI L S 
Sbjct: 110 VQLCLALKYLHSR-KILHRDIKPQNIFLTSN 139

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 81.1 bits (201), Expect = 2e-17
 Identities = 47/161 (29%), Positives = 63/161 (39%), Gaps = 47/161 (29%)

Query: 256 KVVDFGNACRANKQFAEE--IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLF 313
           K++DFG + + +   A    + T  + APEVI    Y +  D+WS   TA ELA G    
Sbjct: 138 KLIDFGLSAQLSDTKARNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEG---- 193

Query: 314 APKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRL 373
            P     + E     AL           IA  G               +R  + WS    
Sbjct: 194 KPP----YSELPPMKALFK---------IATNGP------------PGLRNPEKWSD--- 225

Query: 374 LVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
                        EF +FL   L   PEKRPTA+Q L+HP+
Sbjct: 226 -------------EFKDFLKKCLQKNPEKRPTAEQLLKHPF 253

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 81.8 bits (203), Expect = 3e-17
 Identities = 49/179 (27%), Positives = 78/179 (43%), Gaps = 28/179 (15%)

Query: 256 KVVDFGNACRANKQFAEEIQ------TRQYRAPEVILRA-GYSFSVDMWSFACTAFELAT 308
           K+ DFG A   +    E+        TR YRAPE++L +  Y+ ++D+WS  C   EL T
Sbjct: 143 KICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLT 202

Query: 309 GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDLKRIRRLK 366
              LF  +         D L L++E++G    +    I   ++++Y        +     
Sbjct: 203 RKPLFPGRDYI------DQLNLIVEVLGTPSEEDLKFITSEKARNYLKSLPKKPKK---- 252

Query: 367 FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDET 425
              L +L      F      E  + L  +L F P+KR TA + L HP+L+  +   DE 
Sbjct: 253 --PLSKL------FPGASP-EAIDLLEKMLVFDPKKRITADEALAHPYLAQLHDPEDEP 302

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 80.6 bits (200), Expect = 5e-17
 Identities = 53/191 (27%), Positives = 82/191 (42%), Gaps = 51/191 (26%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMW 297
           KP+  L   D   K+ DFG A RA     + +  E+ T  YRAPE++L +  YS +VD+W
Sbjct: 125 KPQNILINRDGVLKLADFGLA-RAFGIPLRTYTHEVVTLWYRAPEILLGSKHYSTAVDIW 183

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIG-----------KMPRKIAIGG 346
           S  C   E+ TG  LF   S      + D L  + +++G           K+P       
Sbjct: 184 SVGCIFAEMITGKPLFPGDS------EIDQLFKIFQILGTPTEESWPGVTKLPDY----- 232

Query: 347 AQSKDYFDRHG--DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP 404
              K  F +    DL+++       LD   +D               L  +L + P KR 
Sbjct: 233 ---KPTFPKFPPKDLEKV----LPRLDPEGID--------------LLSKMLQYNPAKRI 271

Query: 405 TAQQCLQHPWL 415
           +A++ L+HP+ 
Sbjct: 272 SAKEALKHPYF 282

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 79.6 bits (197), Expect = 1e-16
 Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 15/147 (10%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADGD 93
           RY    ++G G   IV+ A D  T   VALK   +++        AL EI+ L A     
Sbjct: 1   RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQAC---- 56

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYIL 153
                 V++L+D F    P+G    +V+E++   L  +++    + L   +V+   + +L
Sbjct: 57  --QHPYVVKLLDVF----PHGSGFVLVMEYMPSDLSEVLRDEE-RPLPEAQVKSYMRMLL 109

Query: 154 TGLDYLHRELGIIHTDLKPENILLVST 180
            G+ Y+H   GI+H DLKP N+L+ + 
Sbjct: 110 KGVAYMH-ANGIMHRDLKPANLLISAD 135

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 79.9 bits (198), Expect = 2e-16
 Identities = 53/196 (27%), Positives = 83/196 (42%), Gaps = 36/196 (18%)

Query: 243 KPERCLDGIDMRCKVVDFGNA--------CRANKQFAEEIQTRQYRAPEVILRAG-YSFS 293
           KP   L   D R K+ DFG A           N    + + TR YRAPE++L +  Y+  
Sbjct: 134 KPSNILLNSDCRVKLADFGLARSLSELEENPENPVLTDYVATRWYRAPEILLGSTRYTKG 193

Query: 294 VDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF 353
           VDMWS  C   E+  G  LF   S        + L  ++E+IG    +            
Sbjct: 194 VDMWSVGCILGEMLLGKPLFPGTSTL------NQLEKIIEVIGPPSAE------------ 235

Query: 354 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDA-----REFAEFLVPLLDFTPEKRPTAQQ 408
               D++ I+     ++   L  + R    +       +  + L  LL F P KR TA++
Sbjct: 236 ----DIESIKSPFAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLTAEE 291

Query: 409 CLQHPWLSLRNSTRDE 424
            L+HP+++  ++  DE
Sbjct: 292 ALEHPYVAQFHNPSDE 307

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 78.4 bits (194), Expect = 3e-16
 Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 18/147 (12%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK----IQKSAAQ--FAQAALHEIEVLSAVA 90
           RY   +KLG G +++V+ A D  T   VA+K     ++  A+      AL EI++L  + 
Sbjct: 1   RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELK 60

Query: 91  DGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICK 150
                N   +I L+D F H      ++ +V EF+   L ++IK  +   L    ++    
Sbjct: 61  H---PN---IIGLLDVFGH----KSNINLVFEFMETDLEKVIK-DKSIVLTPADIKSYML 109

Query: 151 YILTGLDYLHRELGIIHTDLKPENILL 177
             L GL+YLH    I+H DLKP N+L+
Sbjct: 110 MTLRGLEYLHS-NWILHRDLKPNNLLI 135

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 78.9 bits (195), Expect = 4e-16
 Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 18/170 (10%)

Query: 256 KVVDFGNACRANKQFAEEIQTRQYRAPEVIL-RAGYSFSVDMWSFACTAFELATGDMLFA 314
           K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C   EL TG  LF 
Sbjct: 158 KILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLF- 216

Query: 315 PKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLL 374
           P S     +  D L  +M L+G  P +  +    S+   +    L ++ +  F  +    
Sbjct: 217 PGS-----DHIDQLKRIMNLVGT-PDEELLQKISSESARNYIQSLPQMPKKDFKEV---- 266

Query: 375 VDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE 424
                FS  +     + L  +L   P+KR TA + L HP+L+  +   DE
Sbjct: 267 -----FSGANP-LAIDLLEKMLVLDPDKRITAAEALAHPYLAEYHDPEDE 310

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 77.2 bits (191), Expect = 5e-16
 Identities = 46/167 (27%), Positives = 60/167 (35%), Gaps = 50/167 (29%)

Query: 254 RCKVVDFGNACRANKQFAEEIQ-----TRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 308
             K+ DFG A R       E       T  + APEVI    Y  + D+WS  CT  E+AT
Sbjct: 139 VVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMAT 198

Query: 309 GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFW 368
           G     P     + E  + +A +            IG +        H            
Sbjct: 199 GK---PP-----WSELGNPMAALY----------KIGSSGEPPEIPEH------------ 228

Query: 369 SLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
                       SE    E  +FL   L   P+KRPTA + LQHP+L
Sbjct: 229 -----------LSE----EAKDFLRKCLRRDPKKRPTADELLQHPFL 260

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 76.8 bits (190), Expect = 1e-15
 Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 15/143 (10%)

Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADGDP 94
           Y    KLG G + +V+ A D +T   VALK   +          AL EI +L  +     
Sbjct: 1   YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKEL----- 55

Query: 95  SNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILT 154
                +++L+D         + L +V E+    L + +   R   L  N ++ I   +L 
Sbjct: 56  -KHPNIVKLLDVI----HTERKLYLVFEYCDMDLKKYLD-KRPGPLSPNLIKSIMYQLLR 109

Query: 155 GLDYLHRELGIIHTDLKPENILL 177
           GL Y H    I+H DLKP+NIL+
Sbjct: 110 GLAYCHSH-RILHRDLKPQNILI 131

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 75.7 bits (187), Expect = 2e-15
 Identities = 49/146 (33%), Positives = 71/146 (48%), Gaps = 19/146 (13%)

Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKI-QKS---AAQFAQAALHEIEVLSAVADGD 93
           +   + +G G FS V LA +  T+   A+KI  K      +  +    E EVL+ +    
Sbjct: 3   FKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNG-- 60

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKY 151
                 +I+L   F+    + ++L  VLE+   G+ LL+ I+   Y  L+    R     
Sbjct: 61  ---HPGIIKLYYTFQ----DEENLYFVLEYAPNGE-LLQYIRK--YGSLDEKCTRFYAAE 110

Query: 152 ILTGLDYLHRELGIIHTDLKPENILL 177
           IL  L+YLH   GIIH DLKPENILL
Sbjct: 111 ILLALEYLHS-KGIIHRDLKPENILL 135

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 75.6 bits (186), Expect = 3e-15
 Identities = 59/183 (32%), Positives = 81/183 (44%), Gaps = 37/183 (20%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRA-----NKQFAEEIQTRQYRAPEVILRA-GYSFSVDM 296
           KP+  L       K+ DFG A RA     N  F+ E+ T  YRAP+V+L +  YS S+D+
Sbjct: 127 KPQNLLINKRGELKLADFGLA-RAFGIPVNT-FSNEVVTLWYRAPDVLLGSRTYSTSIDI 184

Query: 297 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY---F 353
           WS  C   E+ TG  LF   +      +ED L  +  ++G        G +Q  +Y   F
Sbjct: 185 WSVGCIMAEMITGRPLFPGTN------NEDQLLKIFRIMGTPTESTWPGISQLPEYKPTF 238

Query: 354 DR--HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ 411
            R    DL+++    F   D L +D               L  LL   PE R +A   LQ
Sbjct: 239 PRYPPQDLQQL----FPHADPLGID--------------LLHRLLQLNPELRISAHDALQ 280

Query: 412 HPW 414
           HPW
Sbjct: 281 HPW 283

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 73.8 bits (182), Expect = 8e-15
 Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 25/149 (16%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAAL----HEIEVLSAVADG 92
            Y     +G G F +V+   +  T  +VA+K Q S  +  + AL     EI++L      
Sbjct: 1   NYQLGDLIGRGAFGVVYKGLNLETGDFVAIK-QISLEKIKEEALKSIMQEIDLLK----- 54

Query: 93  DPSNEKCVIRLIDHFKHAGPNGQHLCMVLEF-LGDSLLRLIKYSRYKGLELNKVREICKY 151
                  +++ I   +        L ++LE+    SL ++IK  ++     +    +  Y
Sbjct: 55  -NLKHPNIVKYIGSIE----TSDSLYIILEYAENGSLRQIIK--KFGPFPES---LVAVY 104

Query: 152 ---ILTGLDYLHRELGIIHTDLKPENILL 177
              +L GL YLH + G+IH D+K  NIL 
Sbjct: 105 VYQVLQGLAYLHEQ-GVIHRDIKAANILT 132

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 73.0 bits (180), Expect = 1e-14
 Identities = 49/148 (33%), Positives = 71/148 (47%), Gaps = 34/148 (22%)

Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALH-EIEVLSAVADGDPSNEKCV 100
            K+G G F  V+ A   RT   VA+K+ K  ++  +  +  EI++L              
Sbjct: 6   EKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILK------------- 52

Query: 101 IRLIDHFKHAGPN-----GQHLC-----MVLEFL-GDSLLRLIKYSRYKGLELNKVREIC 149
                  KH  PN     G +L      +V+EF  G SL  L+K S  + L  +++  +C
Sbjct: 53  -----KCKH--PNIVKYYGSYLKKDELWIVMEFCSGGSLKDLLK-STNQTLTESQIAYVC 104

Query: 150 KYILTGLDYLHRELGIIHTDLKPENILL 177
           K +L GL+YLH   GIIH D+K  NILL
Sbjct: 105 KELLKGLEYLH-SNGIIHRDIKAANILL 131

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 72.6 bits (179), Expect = 3e-14
 Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 16/147 (10%)

Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQ----AALHEIEVLSAVADGD 93
           Y   ++LG G F  V+LA +  T   VA+K  K   +F        L E++ L  +    
Sbjct: 1   YKVIKQLGDGTFGSVYLARNKETGELVAIKKMK--KKFYSWEECMNLREVKSLRKL---- 54

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYIL 153
             +   +++L + F+        L  V E++  +L +L+K  + K    + +R I   IL
Sbjct: 55  NEHP-NIVKLKEVFREND----ELYFVFEYMEGNLYQLMKDRKGKPFSESVIRSIIYQIL 109

Query: 154 TGLDYLHRELGIIHTDLKPENILLVST 180
            GL ++H+  G  H DLKPEN+L+   
Sbjct: 110 QGLAHIHK-HGFFHRDLKPENLLVSGP 135

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 30/179 (16%)

Query: 256 KVVDFGNACRANKQ------FAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELAT 308
           K+ DFG A  A+ +        E + TR YRAPE++L   GY+ ++D+WS  C   E+ +
Sbjct: 146 KICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLS 205

Query: 309 GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI---AIGGAQSKDYFDRHGDLKRIRRL 365
              LF  K      +    L L++ ++G  P +     I   ++++Y         I+ L
Sbjct: 206 NRPLFPGK------DYLHQLNLILGVLGT-PSQEDLNCIISLRARNY---------IKSL 249

Query: 366 KFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE 424
            F    ++  +K  F   D +   + L  +L F P KR T ++ L HP+L   +   DE
Sbjct: 250 PFKP--KVPWNKL-FPNADPKAL-DLLDKMLTFNPHKRITVEEALAHPYLEQYHDPSDE 304

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 71.9 bits (177), Expect = 4e-14
 Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 19/140 (13%)

Query: 43  KLGWGQFSIVWLAYDTRTSSYVALKIQK--SAAQFAQAALHEIEVLSAVADGDPSNEKC- 99
            LG G   +V+      T    ALK        +F +  L E++ L +         +  
Sbjct: 8   VLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSC--------ESP 59

Query: 100 -VIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLD 157
            V++    F   G     + +VLE++ G SL  L+K  +   +    +  I + IL GLD
Sbjct: 60  YVVKCYGAFYKEGE----ISIVLEYMDGGSLADLLK--KVGKIPEPVLAYIARQILKGLD 113

Query: 158 YLHRELGIIHTDLKPENILL 177
           YLH +  IIH D+KP N+L+
Sbjct: 114 YLHTKRHIIHRDIKPSNLLI 133

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 72.0 bits (177), Expect = 5e-14
 Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 15/144 (10%)

Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQK---SAAQFAQAALHEIEVLSAVADG 92
            +Y     +G G + +V    +  T   VA+K  K         + AL E++VL  +   
Sbjct: 1   NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQL--- 57

Query: 93  DPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYI 152
                + ++ L + F+  G     L +V E++  +LL L++ S   GL  + VR     +
Sbjct: 58  ---RHENIVNLKEAFRRKG----RLYLVFEYVERTLLELLEASPG-GLPPDAVRSYIWQL 109

Query: 153 LTGLDYLHRELGIIHTDLKPENIL 176
           L  + Y H    IIH D+KPENIL
Sbjct: 110 LQAIAYCHS-HNIIHRDIKPENIL 132

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 72.7 bits (178), Expect = 5e-14
 Identities = 57/179 (31%), Positives = 81/179 (45%), Gaps = 24/179 (13%)

Query: 252 DMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGD 310
           D   K++DFG A + + +    + TR YRAPEVIL    Y+ +VD+WS  C   E+ TG 
Sbjct: 154 DCELKILDFGLARQTDSEMTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGK 213

Query: 311 MLFAPKSGQGFCEDEDHLALMMEL--IGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFW 368
            LF         +  DHL  +ME+  +   P K  +   QS+D  +    L R R+  F 
Sbjct: 214 PLF---------KGHDHLDQLMEIMKVTGTPSKEFVQKLQSEDAKNYVKKLPRFRKKDFR 264

Query: 369 SLDRLLVDKYRFSETDAREFA-EFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETK 426
           SL             +A   A   L  +L    E R TA + L HP+    +   DET+
Sbjct: 265 SL-----------LPNANPLAVNVLEKMLVLDAESRITAAEALAHPYFEEFHDPEDETE 312

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 71.1 bits (175), Expect = 9e-14
 Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 27/177 (15%)

Query: 243 KPERCLDGIDMRC-KVVDFGNACRANKQ--FAEEIQTRQYRAPEVILRAG-YSFSVDMWS 298
           KPE  L  I     K+ DFG+      +  + E I TR YRAPE +L  G Y   +D+W+
Sbjct: 127 KPENIL--IKDDILKLADFGSCRGIYSKPPYTEYISTRWYRAPECLLTDGYYGPKMDIWA 184

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDE-DHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
             C  FE+ +   LF      G   +E D +A + +++G    ++       K    RH 
Sbjct: 185 VGCVFFEILSLFPLF-----PG--TNELDQIAKIHDVLGTPDAEV-----LKKFRKSRHM 232

Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
           +     +     L +LL +        + E  + L  LL + P++R TA+Q L+HP+
Sbjct: 233 NYNFPSKKGTG-LRKLLPNA-------SAEGLDLLKKLLAYDPDERITAKQALRHPY 281

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 69.9 bits (172), Expect = 1e-13
 Identities = 44/179 (24%), Positives = 59/179 (32%), Gaps = 56/179 (31%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWS 298
           KPE  L   D   K+ DFG   +              T +Y APEV+L  GY  +VD WS
Sbjct: 120 KPENILLDADGHIKLTDFG-LAKELSSEGSRTNTFCGTPEYLAPEVLLGKGYGKAVDWWS 178

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
                +E+ TG   F       + ED      + E I                       
Sbjct: 179 LGVLLYEMLTGKPPF-------YAEDR---KEIYEKI----------------------- 205

Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT---AQQCLQHPW 414
                          L D  RF E  + E  + +  LL   P KR     A++   HP+
Sbjct: 206 ---------------LKDPLRFPEFLSPEARDLISGLLQKDPTKRLGSGGAEEIKAHPF 249

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 49/183 (26%), Positives = 73/183 (39%), Gaps = 34/183 (18%)

Query: 243 KPERCLDGIDMRC--KVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVD 295
           KPE  L  I+     K+ DFG   R+     + +   + TR YRAPE++L   GYS  VD
Sbjct: 125 KPENLL--INTEGVLKLADFG-LARSFGSPVRPYTHYVVTRWYRAPELLLGDKGYSTPVD 181

Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WS  C   EL +   LF  KS      + D L  +   +G    ++          +  
Sbjct: 182 IWSVGCIFAELLSRRPLFPGKS------EIDQLFKIFRTLGTPDPEVWPKFTSLARNY-- 233

Query: 356 HGDLKRIRRLKFW---SLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 412
                            L +L  +    +   A    + L  +L + P KR TA+Q L H
Sbjct: 234 ------KFSFPKKAGMPLPKLFPN----ASPQAL---DLLSQMLHYDPHKRITAEQALAH 280

Query: 413 PWL 415
           P+ 
Sbjct: 281 PYF 283

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 70.3 bits (173), Expect = 3e-13
 Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 21/149 (14%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQK--SAAQFAQAALHEIEVLSAVADGD 93
           RY   + +G G + +V  A D RT   VA+K I         A+  L EI++L  +    
Sbjct: 1   RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHL---- 56

Query: 94  PSNEKCVIRLIDHFKHAGPNGQH-LCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKY- 151
               + +I L+D  +   P   + + +V E +   L ++IK        L    +  +Y 
Sbjct: 57  --RHENIIGLLDILRPPSPEDFNDVYIVTELMETDLHKVIK----SPQPLT--DDHIQYF 108

Query: 152 ---ILTGLDYLHRELGIIHTDLKPENILL 177
              IL GL YLH    +IH DLKP NIL+
Sbjct: 109 LYQILRGLKYLHSA-NVIHRDLKPSNILV 136

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 50/184 (27%), Positives = 75/184 (40%), Gaps = 41/184 (22%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ------TRQYRAPEVILRAGYSFSVDM 296
           KP+  L   D + K+ DFG A    + ++ E+       T  YRAPEV+L++ Y+  VDM
Sbjct: 134 KPQNILVTSDGQVKIADFGLA----RIYSFEMALTSVVVTLWYRAPEVLLQSSYATPVDM 189

Query: 297 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-----MPRKIAIGGAQSKD 351
           WS  C   EL     LF   S      + D L  + ++IG       PR +++     + 
Sbjct: 190 WSVGCIFAELFRRRPLFRGTS------EADQLDKIFDVIGLPSEEEWPRNVSL----PRS 239

Query: 352 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ 411
            F  +          F              E       + L  +L F P KR +A + LQ
Sbjct: 240 SFPSYT---PRSFKSF------------VPEICEEG-LDLLKKMLTFNPHKRISAFEALQ 283

Query: 412 HPWL 415
           HP+ 
Sbjct: 284 HPYF 287

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 69.2 bits (170), Expect = 4e-13
 Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 8/141 (5%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADGDPSNEKCV 100
           +G G +  V+ A D  T  +VALK   +  S      + L EI +L  +   +      +
Sbjct: 7   IGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQL---ESFEHPNI 63

Query: 101 IRLIDHF-KHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYL 159
           +RL+D            L +V E +   L   +      GL    ++++ + +L G+D+L
Sbjct: 64  VRLLDVCHGPRTDRELKLTLVFEHVDQDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFL 123

Query: 160 HRELGIIHTDLKPENILLVST 180
           H    I+H DLKP+NIL+ S 
Sbjct: 124 HSHR-IVHRDLKPQNILVTSD 143

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

 Score = 69.2 bits (170), Expect = 5e-13
 Identities = 68/285 (23%), Positives = 103/285 (36%), Gaps = 75/285 (26%)

Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQF---AQAALHEIEVLSAVADGDPSNE 97
           + LG G    V+L     T    ALK + K         +  L E E+L+        + 
Sbjct: 7   KLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILAT------LDH 60

Query: 98  KCVIRLIDHFKHAGPNGQHLCMVLEF-LGDSLLRLIKYSRYKGLELNKVREICKYILTGL 156
             +  L   F+       +LC+V+++  G  L RL++    K L     R     +L  L
Sbjct: 61  PFLPTLYASFQ----TETYLCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLAL 116

Query: 157 DYLHRELGIIHTDLKPENILL-------VSTIDPSKDPIRSGLTPILERPEGSINGGSTS 209
           +YLH  LGI++ DLKPENILL       +S  D SK   +S + P               
Sbjct: 117 EYLHL-LGIVYRDLKPENILLHESGHIMLSDFDLSK---QSDVEPPPVSKALR------- 165

Query: 210 TMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ 269
                    K   + +V +I     S                    +     N+      
Sbjct: 166 ---------KGSRRSSVNSIPSETFS-------------------EEPSFRSNSF----- 192

Query: 270 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFA 314
               + T +Y APEVI   G+  +VD W+     +E     ML+ 
Sbjct: 193 ----VGTEEYIAPEVISGDGHGSAVDWWTLGILLYE-----MLYG 228

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-terminal photosensory domain and a C-terminal catalytic domain. The N-terminal domain contains two LOV (Light, Oxygen or Voltage) domains that binds FMN. Photoexcitation of the LOV domains results in autophosphorylation at multiple sites and activation of the catalytic domain. Neurospora crassa nrc-2 plays a role in growth and development by controlling entry into the conidiation program. Length = 316

>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

 Score = 68.9 bits (168), Expect = 6e-13
 Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 20/175 (11%)

Query: 243 KPERCLDGIDMRCKVVDFGNACR----ANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 298
           KPE  L   +   K+ DFG A      +N  + E + TR YR+PE++L A Y  +VDMWS
Sbjct: 127 KPENLLISHNDVLKLCDFGFARNLSEGSNANYTEYVATRWYRSPELLLGAPYGKAVDMWS 186

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
             C   EL+ G  LF  +S      + D L  + +++G +P +      Q K ++     
Sbjct: 187 VGCILGELSDGQPLFPGES------EIDQLFTIQKVLGPLPAE------QMKLFYSN--- 231

Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP 413
             R   L+F +++     + R+    +    + +  LL   P  R   +QCL HP
Sbjct: 232 -PRFHGLRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLNHP 285

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes cause a phenotype similar to Rett syndrome (RTT), a progressive neurodevelopmental disorder. These pathogenic mutations are located in the N-terminal portion of the protein within the kinase domain. Length = 287

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 69.4 bits (170), Expect = 6e-13
 Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 29/192 (15%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEE-------IQTRQYRAPEVILR-AGYSFSV 294
           KP   L   D   K+ DFG A   ++   E        + TR YRAPE++L    Y+ ++
Sbjct: 132 KPGNLLVNADCELKICDFGLARGFSENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAI 191

Query: 295 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDY 352
           D+WS  C   EL     +F    G+ +    D L  +++++G    +    IG  ++++Y
Sbjct: 192 DVWSVGCILAELLGRKPVF---KGKDYV---DQLNQILQVLGTPDEETLSRIGSPKAQNY 245

Query: 353 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 412
                 L  I +  F S+       +  +   A    + L  LL F P KR + ++ L+H
Sbjct: 246 IR---SLPNIPKKPFESI-------FPNANPLA---LDLLEKLLAFDPTKRISVEEALEH 292

Query: 413 PWLSLRNSTRDE 424
           P+L++ +   DE
Sbjct: 293 PYLAIWHDPDDE 304

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 68.9 bits (169), Expect = 8e-13
 Identities = 53/210 (25%), Positives = 89/210 (42%), Gaps = 32/210 (15%)

Query: 243 KPERCLDGIDMRCKVVDFGNA-CRANKQ------FAEEIQTRQYRAPEVILRAG-YSFSV 294
           KP   L   D   ++ DFG A   ++          E + TR YRAPE++L    Y+ ++
Sbjct: 134 KPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAI 193

Query: 295 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDY 352
           DMWS  C   E+     LF  K+          L L++ ++G    ++   IG  + + Y
Sbjct: 194 DMWSVGCIFAEMLGRRQLFPGKNYVH------QLKLILSVLGSPSEEVLNRIGSDRVRKY 247

Query: 353 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 412
                +L R + + +  +       +  +  +A +    L  +L F PE+R T +Q LQH
Sbjct: 248 IQ---NLPRKQPVPWSKI-------FPKASPEALDL---LSQMLQFDPEERITVEQALQH 294

Query: 413 PWLSLRNSTRDETKNKSNVEKVDVGMSKLE 442
           P+L+  +   DE          D     +E
Sbjct: 295 PFLAQYHDPDDEPTCPP---PFDFDFEAIE 321

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 67.6 bits (166), Expect = 2e-12
 Identities = 54/179 (30%), Positives = 73/179 (40%), Gaps = 26/179 (14%)

Query: 243 KPERCLDGIDMRCKVVDFGNACR---ANKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 298
           KP   L   D   K+ DFG A      N++   ++ TR YRAPE++  A  Y   VDMWS
Sbjct: 129 KPNNLLIASDGVLKLADFGLARSFGSPNRKMTHQVVTRWYRAPELLFGARHYGVGVDMWS 188

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS-KDYFDRHG 357
             C   EL           G     D D L  + E +G  P +    G  S  DY     
Sbjct: 189 VGCIFAELLLRVPFLP---GDS---DIDQLGKIFEALGT-PTEENWPGVTSLPDY----- 236

Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
                  ++F       + K  F    + +  + L  LL   P KR TA+Q L+HP+ S
Sbjct: 237 -------VEFKPFPPTPL-KQIFP-AASDDALDLLQRLLTLNPNKRITARQALEHPYFS 286

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 40/145 (27%), Positives = 57/145 (39%), Gaps = 29/145 (20%)

Query: 276 TRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMEL 334
           TR YR PE++L    Y+ +VD+W   C   E+ T   +   KS      D D L L+ +L
Sbjct: 189 TRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKS------DIDQLHLIFKL 242

Query: 335 IG-----KMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFA 389
            G       P   ++ G +    F  +    R    +F  L    +D             
Sbjct: 243 CGTPTEETWPGWRSLPGCEGVHSFTNY---PRTLEERFGKLGPEGLD------------- 286

Query: 390 EFLVPLLDFTPEKRPTAQQCLQHPW 414
             L  LL   P KR TA   L+HP+
Sbjct: 287 -LLSKLLSLDPYKRLTASDALEHPY 310

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 66.1 bits (162), Expect = 4e-12
 Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 15/139 (10%)

Query: 43  KLGWGQFSIVWLAYDTRTSSYVALKIQK----SAAQFAQAALHEIEVLSAVADGDPSNEK 98
           K+G G FS V  A   +T  Y A+K  K    S  Q     L EI+ L  ++   P+   
Sbjct: 6   KIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNN--LREIQALRRLSP-HPN--- 59

Query: 99  CVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDY 158
            ++RLI+        G+ L +V E +  +L  LIK  +   L   +V+     +L  LD+
Sbjct: 60  -ILRLIEVL-FDRKTGR-LALVFELMDMNLYELIKGRKRP-LPEKRVKSYMYQLLKSLDH 115

Query: 159 LHRELGIIHTDLKPENILL 177
           +HR  GI H D+KPENIL+
Sbjct: 116 MHRN-GIFHRDIKPENILI 133

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 66.1 bits (162), Expect = 4e-12
 Identities = 42/142 (29%), Positives = 61/142 (42%), Gaps = 17/142 (11%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRL 103
           +G G +  V+ A   +T   VA+KI        +    E  +L        SN   +   
Sbjct: 14  IGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILR-----KYSNHPNIATF 68

Query: 104 IDHFKHAGPNGQH--LCMVLEFL-GDSLLRLIKYSRYKGLELNKVRE-----ICKYILTG 155
              F    P G    L +V+E   G S+  L+K  R KG    +++E     I +  L G
Sbjct: 69  YGAFIKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRKKG---KRLKEEWIAYILRETLRG 125

Query: 156 LDYLHRELGIIHTDLKPENILL 177
           L YLH    +IH D+K +NILL
Sbjct: 126 LAYLHENK-VIHRDIKGQNILL 146

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 65.7 bits (161), Expect = 5e-12
 Identities = 44/139 (31%), Positives = 66/139 (47%), Gaps = 24/139 (17%)

Query: 47  GQFSIVWLAYDTRTSSYVALK-IQKSAAQFA---QAALHEIEVLSAVADGDPSNEKCVIR 102
           G +  V+LA    T    A+K I+K+           L E ++LS      P     V++
Sbjct: 4   GAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQS--PY----VVK 57

Query: 103 LIDHFKHAGPNGQHLCMVLEFL--GD--SLLRLIKYSRYKGLELNKVREICKYILTGLDY 158
           L   F+      ++L +V+E+L  GD  SLL  +       L+ +  R     I+  L+Y
Sbjct: 58  LYYSFQGK----KNLYLVMEYLPGGDLASLLENVGS-----LDEDVARIYIAEIVLALEY 108

Query: 159 LHRELGIIHTDLKPENILL 177
           LH   GIIH DLKP+NIL+
Sbjct: 109 LHS-NGIIHRDLKPDNILI 126

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 65.7 bits (161), Expect = 5e-12
 Identities = 45/158 (28%), Positives = 67/158 (42%), Gaps = 39/158 (24%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-------------IQKSAAQFAQAALHEI 83
            +     +G G F  V+ A D RT+  VA+K             IQ+           EI
Sbjct: 2   LFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQ-----------EI 50

Query: 84  EVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLEL 142
           + LS          +C    I  +  +   G  L +++E+  G S L L+K  +   L+ 
Sbjct: 51  QFLS----------QCRSPYITKYYGSFLKGSKLWIIMEYCGGGSCLDLLKPGK---LDE 97

Query: 143 NKVREICKYILTGLDYLHRELGIIHTDLKPENILLVST 180
             +  I + +L GL+YLH E G IH D+K  NILL   
Sbjct: 98  TYIAFILREVLLGLEYLHEE-GKIHRDIKAANILLSEE 134

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 65.6 bits (160), Expect = 8e-12
 Identities = 54/188 (28%), Positives = 85/188 (45%), Gaps = 28/188 (14%)

Query: 243 KPERCLDGIDMRC--KVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSF 299
           KP   L  I+  C  K+ DFG A   + Q    + TR YRAPE++L    Y   VD+WS 
Sbjct: 135 KPSNIL--INENCDLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSA 192

Query: 300 ACTAFELATGDMLFAPKSGQGFCEDEDHL---ALMMELIGKMPRKIAIGGAQSKDYFDRH 356
            C   E+  G  LF  K         DH+   +++ +L+G  P  + I    S++     
Sbjct: 193 GCIFAEMLEGKPLFPGK---------DHVNQFSIITDLLGTPPDDV-INTICSENTLRFV 242

Query: 357 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
             L +   + F         K++ ++  A +  E    +L F P+KR +A + L HP+L+
Sbjct: 243 QSLPKREPVPFSE-------KFKNADPSAIDLLE---KMLVFDPQKRISAAEALAHPYLA 292

Query: 417 LRNSTRDE 424
             +   DE
Sbjct: 293 PYHDPTDE 300

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 45/141 (31%), Positives = 59/141 (41%), Gaps = 20/141 (14%)

Query: 276 TRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDE-DHLALMME 333
           T  YR PE++L A  Y   VDMWS  C   EL  G  +F     QG    E + L  + E
Sbjct: 164 TLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIF-----QG--STELEQLEKIFE 216

Query: 334 LIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLV 393
           L G  P      G     +F+   +LK  +  K     R L +   F         + L 
Sbjct: 217 LCGS-PTDENWPGVSKLPWFE---NLKPKKPYK-----RRLREF--FKHLIDPSALDLLD 265

Query: 394 PLLDFTPEKRPTAQQCLQHPW 414
            LL   P+KR +A Q LQH +
Sbjct: 266 KLLTLDPKKRISADQALQHEY 286

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 63.4 bits (155), Expect = 3e-11
 Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 17/138 (12%)

Query: 43  KLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIR 102
           K+G G    V+ A D  T   VA+K  +   Q  +  ++EI ++             ++ 
Sbjct: 26  KIGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKD------CKHPNIVD 79

Query: 103 LIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVR--EICKYILTGLDYL 159
             D +         L +V+E++ G SL  +I       + +N+ +   +C+ +L GL+YL
Sbjct: 80  YYDSYLVGD----ELWVVMEYMDGGSLTDII---TQNFVRMNEPQIAYVCREVLQGLEYL 132

Query: 160 HRELGIIHTDLKPENILL 177
           H    +IH D+K +NILL
Sbjct: 133 HS-QNVIHRDIKSDNILL 149

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 63.7 bits (156), Expect = 4e-11
 Identities = 52/147 (35%), Positives = 71/147 (48%), Gaps = 16/147 (10%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGD 93
           +Y   +KLG G + IVW A D RT   VALK    A   A  AQ    EI  L  +  GD
Sbjct: 8   KYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQEL--GD 65

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKG-LELNKVREICKYI 152
             N   +++L++  K    N + + +V E++   L  +I+       LE    R I   +
Sbjct: 66  HPN---IVKLLNVIKAE--NDKDIYLVFEYMETDLHAVIR----ANILEDVHKRYIMYQL 116

Query: 153 LTGLDYLHRELGIIHTDLKPENILLVS 179
           L  L Y+H    +IH DLKP NILL S
Sbjct: 117 LKALKYIHSG-NVIHRDLKPSNILLNS 142

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 64.0 bits (154), Expect = 5e-11
 Identities = 47/201 (23%), Positives = 67/201 (33%), Gaps = 48/201 (23%)

Query: 243 KPERCL-DGIDMRCKVVDFGNACRA---------NKQFAEEIQTRQYRAPEVIL---RAG 289
           KPE  L D      K++DFG A                +  + T  Y APEV+L    A 
Sbjct: 128 KPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAY 187

Query: 290 YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS 349
            S S D+WS   T +EL TG   F         E E + +   +                
Sbjct: 188 ASSSSDIWSLGITLYELLTGLPPF---------EGEKNSSATSQT--------------- 223

Query: 350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQC 409
                    LK I  L   SL   L       E  ++  ++ L  LL   P+ R ++   
Sbjct: 224 ---------LKIILELPTPSLASPL--SPSNPELISKAASDLLKKLLAKDPKNRLSSSSD 272

Query: 410 LQHPWLSLRNSTRDETKNKSN 430
           L H  L+       +  +   
Sbjct: 273 LSHDLLAHLKLKESDLSDLLK 293

Length = 384

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 63.2 bits (154), Expect = 5e-11
 Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 29/169 (17%)

Query: 256 KVVDFGNA---CRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDM 311
           K+ DFG A           E + TR YRAPE++L  + Y+ ++D+WS  C   EL     
Sbjct: 148 KICDFGLARTTSEKGDFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKP 207

Query: 312 LFAPKSGQGFCEDEDH---LALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR-IRRLKF 367
           LF  K         D+   L L+ EL+G  P +  +G       F R+   +R IR L +
Sbjct: 208 LFPGK---------DYVHQLKLITELLGS-PSEEDLG-------FIRNEKARRYIRSLPY 250

Query: 368 WSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
               +     +  +   A +  E    +L F P KR T ++ L HP+L+
Sbjct: 251 TP-RQSFARLFPHANPLAIDLLE---KMLVFDPSKRITVEEALAHPYLA 295

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 63.2 bits (154), Expect = 6e-11
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 35/178 (19%)

Query: 256 KVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLF 313
           K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  C   E+  G +LF
Sbjct: 158 KILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLF 217

Query: 314 APKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIR-----RLKFW 368
                       DH       I +  + I   G  S ++  R     R       +   +
Sbjct: 218 PGT---------DH-------IDQWNKIIEQLGTPSDEFMSRLQPTVRNYVENRPKYAGY 261

Query: 369 SLDRLLVDKYRFSETD---------AREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 417
           S + L  D     +++         AR   + L  +L   PEKR +    LQHP++++
Sbjct: 262 SFEELFPDVLFPPDSESHNKLKASQAR---DLLSKMLVIDPEKRISVDDALQHPYINV 316

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 63.2 bits (154), Expect = 6e-11
 Identities = 53/178 (29%), Positives = 78/178 (43%), Gaps = 21/178 (11%)

Query: 243 KPERCLDGIDMRCKVVDFGNA----CRANKQFAEEIQTRQYRAPEVILRAG-YSFSVDMW 297
           KP   L   +   K+ DFG A       +K   +E+ T+ YRAPE+++ +  Y+ +VD+W
Sbjct: 130 KPGNLLVNSNCVLKICDFGLARVEEPDESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIW 189

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   EL    +LF  +S          L L+ +L+G  P   A+  A       R  
Sbjct: 190 SVGCIFAELLGRRILFQAQS------PIQQLDLITDLLGT-PSLEAMRSACEG---ARAH 239

Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
            L+   +    SL  L    Y  S     E    L  +L F P+KR +A   L HP+L
Sbjct: 240 ILRGPHKPP--SLPVL----YTLSSQATHEAVHLLCRMLVFDPDKRISAADALAHPYL 291

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 62.5 bits (152), Expect = 6e-11
 Identities = 88/384 (22%), Positives = 135/384 (35%), Gaps = 107/384 (27%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADGD 93
           +Y    K+G G +  V+ A +  T   VALK   +         +AL EI +L  +    
Sbjct: 1   KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKEL---- 56

Query: 94  PSNEKCVIRLID--HFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKY 151
               K ++RL D  H          L +V E+    L +         ++   V+     
Sbjct: 57  --KHKNIVRLYDVLHSDK------KLTLVFEYCDQDLKKYFDSCNGD-IDPEIVKSFMFQ 107

Query: 152 ILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTM 211
           +L GL + H    ++H DLKP+N+L                          IN       
Sbjct: 108 LLKGLAFCHSH-NVLHRDLKPQNLL--------------------------INKNG---- 136

Query: 212 TIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA 271
              E KL        A+  + RA               GI +RC              ++
Sbjct: 137 ---ELKL--------ADFGLARAF--------------GIPVRC--------------YS 157

Query: 272 EEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLAL 330
            E+ T  YR P+V+  A  YS S+DMWS  C   ELA       P +     + +D L  
Sbjct: 158 AEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGN-----DVDDQLKR 212

Query: 331 MMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAE 390
           +  L+G    +   G ++  DY                     +V K   +  D      
Sbjct: 213 IFRLLGTPTEESWPGVSKLPDY----KPYPMYPATTSLV---NVVPKLNSTGRD------ 259

Query: 391 FLVPLLDFTPEKRPTAQQCLQHPW 414
            L  LL   P +R +A++ LQHP+
Sbjct: 260 LLQNLLVCNPVQRISAEEALQHPY 283

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 12/146 (8%)

Query: 35  GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVAL-KIQKSAA--QFAQAALHEIEVLSAVAD 91
           G RY     +G G + +V  A DTR+   VA+ KI  +      A+  L E+++L     
Sbjct: 4   GSRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKH 63

Query: 92  GDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKY 151
            +      +I + D  +  G + + + +V++ +   L  +I +S  + L    +R     
Sbjct: 64  DN------IIAIRDILRPPGADFKDVYVVMDLMESDLHHII-HSD-QPLTEEHIRYFLYQ 115

Query: 152 ILTGLDYLHRELGIIHTDLKPENILL 177
           +L GL Y+H    +IH DLKP N+L+
Sbjct: 116 LLRGLKYIHSA-NVIHRDLKPSNLLV 140

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 51/178 (28%), Positives = 79/178 (44%), Gaps = 21/178 (11%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMW 297
           KP+  L       K+ DFG A RA    +K ++ E+ T  YR P+V+L +  YS S+DMW
Sbjct: 130 KPQNLLISERGELKLADFGLA-RAKSVPSKTYSNEVVTLWYRPPDVLLGSTEYSTSLDMW 188

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
              C  +E+ATG  LF      G  + ED L  +  ++G  P +    G  S   F  + 
Sbjct: 189 GVGCIFYEMATGRPLFP-----GSTDVEDQLHKIFRVLG-TPTEETWPGVSSNPEFKPY- 241

Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
                    F+    L+    R          E  +  L + P+KR +A + ++HP+ 
Sbjct: 242 ------SFPFYPPRPLINHAPRLD--RIPHGEELALKFLQYEPKKRISAAEAMKHPYF 291

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 18/179 (10%)

Query: 252 DMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGD 310
           D   K++DFG A  A+ +    + TR YRAPEVIL    Y+ +VD+WS  C   E+ TG 
Sbjct: 153 DCELKILDFGLARHADAEMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGK 212

Query: 311 MLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSL 370
            LF  K      +  D L  ++++ G +P    +   + K        L +  R  F +L
Sbjct: 213 TLFKGK------DYLDQLTQILKVTG-VPGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTL 265

Query: 371 DRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKS 429
                    F +   +   + L  +L+   +KR TA + L+HP+        +ET+ + 
Sbjct: 266 ---------FPKASPQA-VDLLEKMLELDVDKRLTATEALEHPYFDSFRDADEETEQQP 314

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 48/182 (26%), Positives = 75/182 (41%), Gaps = 31/182 (17%)

Query: 243 KPERCLDGIDMRCKVVDFG----NACRANKQFAEEIQTRQYRAPEVILRA-GYSFSVDMW 297
           KP   L   D   K+ DFG     +    + ++ ++ TR YRAPE++  A  Y   VD+W
Sbjct: 126 KPANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWYRAPELLYGARKYDPGVDLW 185

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY----F 353
           +  C   EL  G  LF  ++      D + LA++   +G    +   G     DY    F
Sbjct: 186 AVGCIFAELLNGSPLFPGEN------DIEQLAIVFRTLGTPNEETWPGLTSLPDYNKITF 239

Query: 354 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP 413
                 K I       L+ +      F +       + L  LL + P KR +A + L+HP
Sbjct: 240 PES---KPIP------LEEI------FPDASPEAL-DLLKGLLVYDPSKRLSAAEALRHP 283

Query: 414 WL 415
           + 
Sbjct: 284 YF 285

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 60.6 bits (148), Expect = 2e-10
 Identities = 41/145 (28%), Positives = 59/145 (40%), Gaps = 30/145 (20%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIR 102
           LG G F  V L     T    A+K ++K      +   H               E+ ++ 
Sbjct: 1   LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEH------------TLTERNILS 48

Query: 103 LIDH---------FKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYI 152
            I+H         F+      + L +VLE+  G  L   +  S+       + R     I
Sbjct: 49  RINHPFIVKLHYAFQ----TEEKLYLVLEYAPGGELFSHL--SKEGRFSEERARFYAAEI 102

Query: 153 LTGLDYLHRELGIIHTDLKPENILL 177
           +  L+YLH  LGII+ DLKPENILL
Sbjct: 103 VLALEYLHS-LGIIYRDLKPENILL 126

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 61.0 bits (149), Expect = 2e-10
 Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 18/143 (12%)

Query: 42  RKLGWGQFSIVWLAYDTRTSSY----VALKIQKSAAQFAQAA--LHEIEVLSAVADGDPS 95
           +KLG G F  V+              VA+K  K  A   Q    L E  ++  +      
Sbjct: 5   KKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKL------ 58

Query: 96  NEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILT 154
           +   +++L+          + L +V+E++ G  LL  ++ +R K L L+ +      I  
Sbjct: 59  DHPNIVKLL----GVCTEEEPLMIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIAR 114

Query: 155 GLDYLHRELGIIHTDLKPENILL 177
           G++YL      IH DL   N L+
Sbjct: 115 GMEYLES-KNFIHRDLAARNCLV 136

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 61.6 bits (149), Expect = 2e-10
 Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 22/185 (11%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 147 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 206

Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +     +  D L L++ L+G    ++   I    +++Y      L
Sbjct: 207 IMAELLTGRTLF-PGT-----DHIDQLKLILRLVGTPGAELLKKISSESARNYIQ---SL 257

Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN 419
            ++ ++ F        + +  +   A    + L  +L    +KR TA Q L H + +  +
Sbjct: 258 TQMPKMNF-------ANVFIGANPLA---VDLLEKMLVLDSDKRITAAQALAHAYFAQYH 307

Query: 420 STRDE 424
              DE
Sbjct: 308 DPDDE 312

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 61.6 bits (149), Expect = 2e-10
 Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 32/190 (16%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   +++DFG A +A+ +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 145 KPSNVAVNEDCELRILDFGLARQADDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 204

Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDR---- 355
              EL  G  LF    G  +    D L  +ME++G    ++   I    ++ Y       
Sbjct: 205 IMAELLKGKALF---PGNDYI---DQLKRIMEVVGTPSPEVLKKISSEHARKYIQSLPHM 258

Query: 356 -HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
              DLK+I    F   + L +D               L  +L    +KR +A + L HP+
Sbjct: 259 PQQDLKKI----FRGANPLAID--------------LLEKMLVLDSDKRISASEALAHPY 300

Query: 415 LSLRNSTRDE 424
            S  +   DE
Sbjct: 301 FSQYHDPEDE 310

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 49/178 (27%), Positives = 75/178 (42%), Gaps = 27/178 (15%)

Query: 243 KPERCL-DGIDMRCKVVDFGNACRAN----KQFAEEIQTRQYRAPEVILRAG-YSFSVDM 296
           KP+  L D      K+ D G   RA     K +  EI T  YRAPEV+L +  YS  VD+
Sbjct: 137 KPQNLLVDKQKGLLKIADLGLG-RAFSIPVKSYTHEIVTLWYRAPEVLLGSTHYSTPVDI 195

Query: 297 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 356
           WS  C   E++    LF      G  E +  L +  +L+G    ++  G ++ +D+ +  
Sbjct: 196 WSVGCIFAEMSRKQPLFP-----GDSELQQLLHI-FKLLGTPTEQVWPGVSKLRDWHE-- 247

Query: 357 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
                      W    L        +    E  + L  +L + P KR +A+  L HP+
Sbjct: 248 --------FPQWKPQDL---SRAVPDLSP-EGLDLLQKMLRYDPAKRISAKAALTHPY 293

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 243 KPERCL-DGIDMRCKVVDFGNACR---ANKQFAEEIQTRQYRAPEVILRAG-YSFSVDMW 297
           KPE  L D  + + K+ DFG +             + T  Y APEV+L  G YS   D+W
Sbjct: 119 KPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKSDIW 178

Query: 298 SFACTAFEL 306
           S     +EL
Sbjct: 179 SLGVILYEL 187

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 60.6 bits (148), Expect = 3e-10
 Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 24/147 (16%)

Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKIQKSA--AQFAQAA--LHEIEVLSAVADGDPSNE 97
           + LG G F  V L     +  Y ALKI   A   +  Q    L+E  +L ++        
Sbjct: 7   KTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSI------RH 60

Query: 98  KCVIRLIDHFKHAGPNGQHLCMVLEFL--GD--SLLRLIKYSRYKGLELNKVREICKYIL 153
             ++ L   F+       +L +V+E++  G+  S LR     +         R     ++
Sbjct: 61  PFLVNLYGSFQDD----SNLYLVMEYVPGGELFSHLR-----KSGRFPEPVARFYAAQVV 111

Query: 154 TGLDYLHRELGIIHTDLKPENILLVST 180
             L+YLH  L I++ DLKPEN+LL S 
Sbjct: 112 LALEYLHS-LDIVYRDLKPENLLLDSD 137

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 60.0 bits (146), Expect = 6e-10
 Identities = 47/147 (31%), Positives = 73/147 (49%), Gaps = 21/147 (14%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALH------EIEVLSAVA 90
           RY     +G G +  V  A+DT+T   VA+K  K +  F Q+A+H      E+ +L  + 
Sbjct: 16  RYQNLSPVGSGAYGQVCSAFDTKTGRKVAIK--KLSRPF-QSAIHAKRTYRELRLLKHM- 71

Query: 91  DGDPSNEKCVIRLIDHFKHAGP--NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREI 148
                + + VI L+D F  A    + Q + +V   +G  L  ++K  +   L  + ++ +
Sbjct: 72  -----DHENVIGLLDVFTPASSLEDFQDVYLVTHLMGADLNNIVKCQK---LSDDHIQFL 123

Query: 149 CKYILTGLDYLHRELGIIHTDLKPENI 175
              IL GL Y+H   GIIH DLKP NI
Sbjct: 124 VYQILRGLKYIH-SAGIIHRDLKPSNI 149

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 60.0 bits (145), Expect = 7e-10
 Identities = 55/187 (29%), Positives = 84/187 (44%), Gaps = 28/187 (14%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 150 KPSNIVVKSDCTLKILDFGLARTACTNFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 209

Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
           C   EL  G ++F     QG     DH       I +  + I   G  S ++ +R     
Sbjct: 210 CIMGELVKGSVIF-----QG----TDH-------IDQWNKVIEQLGTPSAEFMNRLQPTV 253

Query: 361 R---IRRLKF--WSLDRLLVDKYRFSETD-----AREFAEFLVPLLDFTPEKRPTAQQCL 410
           R     R ++   S + L  D    SE++       +  + L  +L   P+KR +  + L
Sbjct: 254 RNYVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVDEAL 313

Query: 411 QHPWLSL 417
           +HP++++
Sbjct: 314 RHPYITV 320

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score = 59.4 bits (144), Expect = 9e-10
 Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 29/182 (15%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVI--LRAGYSFSV 294
           KP+  L   D + K+ DFG A  A         + + + TR YRAPE+     + Y+ ++
Sbjct: 130 KPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAI 189

Query: 295 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDY 352
           D+WS  C   E+ TG  LF  K+          L L+ +L+G    +    +   +++ Y
Sbjct: 190 DIWSIGCIFAEVLTGKPLFPGKNVV------HQLDLITDLLGTPSPETISRVRNEKARRY 243

Query: 353 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 412
                 +++ + + F           +F   D       L  LL F P+ RPTA++ L  
Sbjct: 244 L---SSMRKKQPVPFSQ---------KFPNADPLAL-RLLERLLAFDPKDRPTAEEALAD 290

Query: 413 PW 414
           P+
Sbjct: 291 PY 292

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 59.7 bits (144), Expect = 9e-10
 Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 10/178 (5%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 146 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 205

Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 359
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 206 CIMGEMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 259

Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 417
             +   K +  D L       ++  A +  + L  +L   P KR +  + LQHP++++
Sbjct: 260 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQHPYINV 316

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 59.3 bits (143), Expect = 1e-09
 Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 28/187 (14%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212

Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
           C   E+  G +LF            DH+    ++I ++       G    ++  +     
Sbjct: 213 CIMGEMIKGGVLFPGT---------DHIDQWNKVIEQL-------GTPCPEFMKKLQPTV 256

Query: 361 RI---RRLKF--WSLDRLLVDKYRFSETD-----AREFAEFLVPLLDFTPEKRPTAQQCL 410
           R     R K+  +S ++L  D    ++++     A +  + L  +L     KR +  + L
Sbjct: 257 RTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEAL 316

Query: 411 QHPWLSL 417
           QHP++++
Sbjct: 317 QHPYINV 323

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 58.3 bits (142), Expect = 2e-09
 Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 13/140 (9%)

Query: 41  QRKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADGDPSNE 97
             ++G G +  V+ A + +T   VALK   ++     F   A+ EI++L  +        
Sbjct: 4   IAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKL------RH 57

Query: 98  KCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLD 157
             ++RL +     G     + MV E++   L  L+     K    ++++   K +L GL 
Sbjct: 58  PNIVRLKEIVTSKGKGS--IYMVFEYMDHDLTGLLDSPEVK-FTESQIKCYMKQLLEGLQ 114

Query: 158 YLHRELGIIHTDLKPENILL 177
           YLH   GI+H D+K  NIL+
Sbjct: 115 YLHSN-GILHRDIKGSNILI 133

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 58.1 bits (140), Expect = 2e-09
 Identities = 55/175 (31%), Positives = 77/175 (44%), Gaps = 23/175 (13%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEE--IQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KPE  L     + K+ DFG A   + Q A    + T  YRAPEV+L++ Y+  VDMWS  
Sbjct: 135 KPENILVTSGGQVKLADFGLARIYSCQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVG 194

Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
           C   E+     LF   S      + D L  + +LIG +P          +D + R   L 
Sbjct: 195 CIFAEMFRRKPLFCGNS------EADQLGKIFDLIG-LP---------PEDDWPRDVTLP 238

Query: 361 RIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              R  F       V      E +    A+ L+ +L F P KR +A + LQHP+ 
Sbjct: 239 ---RGAFSPRGPRPVQSV-VPEIEESG-AQLLLEMLTFNPHKRISAFRALQHPFF 288

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 37/152 (24%)

Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADGDPSNEK 98
            K+G G F  V+ A +  T   +A+K   IQ +        + EI            +E 
Sbjct: 6   NKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDND----PKTIKEIA-----------DEM 50

Query: 99  CVIRLIDHFKHAGPN----------GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVRE 147
            V+ L+ H     PN           + + + +E+  G +L  L+++ R   L+ + +R 
Sbjct: 51  KVLELLKH-----PNLVKYYGVEVHREKVYIFMEYCSGGTLEELLEHGRI--LDEHVIRV 103

Query: 148 ICKYILTGLDYLHRELGIIHTDLKPENILLVS 179
               +L GL YLH   GI+H D+KP NI L  
Sbjct: 104 YTLQLLEGLAYLH-SHGIVHRDIKPANIFLDH 134

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 21/151 (13%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADGD 93
            +   +KLG G +  V+       + + ALK   +   + +  + A++EI +L++V    
Sbjct: 1   DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASV---- 56

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEF--LGDSLLRLIKYSRYKGLELNKVREICKY 151
             N   +I     +K A  +G  LC+V+E+   GD L + I   + K  +L   +EI + 
Sbjct: 57  --NHPNIIS----YKEAFLDGNKLCIVMEYAPFGD-LSKAISKRKKKR-KLIPEQEIWRI 108

Query: 152 ---ILTGLDYLHRELGIIHTDLKPENILLVS 179
              +L GL  LH E  I+H DLK  NILLV+
Sbjct: 109 FIQLLRGLQALH-EQKILHRDLKSANILLVA 138

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 57.7 bits (139), Expect = 3e-09
 Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 8/147 (5%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADGD 93
           +Y    ++G G +  V+ A D  +  +VALK   +Q +      + + E+ +L  +   D
Sbjct: 1   QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFD 60

Query: 94  PSNEKCVIRLIDHFKHAGPNGQ-HLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYI 152
             N   ++RL+D    +  + +  + +V E +   L   +      GL    ++++ +  
Sbjct: 61  HPN---IVRLMDVCATSRTDRETKVTLVFEHVDQDLRTYLDKVPPPGLPAETIKDLMRQF 117

Query: 153 LTGLDYLHRELGIIHTDLKPENILLVS 179
           L GLD+LH    I+H DLKPENIL+ S
Sbjct: 118 LRGLDFLHANC-IVHRDLKPENILVTS 143

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 14/136 (10%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKI--QKSAAQFAQAALHEIEVLSAVADGDPSNEKCVI 101
           LG G F  V+ A    T  + A KI   +S  +     + EI++LS            ++
Sbjct: 13  LGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMV-EIDILSEC------KHPNIV 65

Query: 102 RLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR 161
            L + + +       L +++EF     L  I     +GL   ++R +C+ +L  L++LH 
Sbjct: 66  GLYEAYFYEN----KLWILIEFCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHS 121

Query: 162 ELGIIHTDLKPENILL 177
              +IH DLK  NILL
Sbjct: 122 HK-VIHRDLKAGNILL 136

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 15/142 (10%)

Query: 43  KLGWGQFSIVWLAYDTRTSSYVALK--IQKSAAQ-FAQAALHEIEVLSAVADGDPSNEKC 99
           KLG G F  V+ A   +T   VALK  +  +    F   AL EI++L  +          
Sbjct: 15  KLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKL------KHPN 68

Query: 100 VIRLIDHF--KHAGPNGQHLC--MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTG 155
           V+ LID    +      +     MV  ++   L  L++    K L  ++++     +L G
Sbjct: 69  VVPLIDMAVERPDKSKRKRGSVYMVTPYMDHDLSGLLENPSVK-LTESQIKCYMLQLLEG 127

Query: 156 LDYLHRELGIIHTDLKPENILL 177
           ++YLH    I+H D+K  NIL+
Sbjct: 128 INYLHEN-HILHRDIKAANILI 148

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 57.1 bits (138), Expect = 4e-09
 Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 17/144 (11%)

Query: 43  KLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ---FAQAALHEIEVLSAVADGDPSNEKC 99
           K+G G +  V+ A D  T   VALK  +           AL EI +L  +     S    
Sbjct: 8   KIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQML-----SESIY 62

Query: 100 VIRLID--HFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKG----LELNKVREICKYIL 153
           ++RL+D  H +        L +V E+L DS L+    S  +G    L    ++     +L
Sbjct: 63  IVRLLDVEHVEEKNGKPS-LYLVFEYL-DSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLL 120

Query: 154 TGLDYLHRELGIIHTDLKPENILL 177
            G+ + H+  G++H DLKP+N+L+
Sbjct: 121 KGVAHCHK-HGVMHRDLKPQNLLV 143

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 57.2 bits (139), Expect = 4e-09
 Identities = 52/168 (30%), Positives = 75/168 (44%), Gaps = 30/168 (17%)

Query: 256 KVVDFGNACRAN---KQFAEEIQTRQYRAPEVILRAG-YSFSVDMWSFACTAFELATGDM 311
           K+ DFG A       K + + + T  YRAPE++L A  YS ++DMWS  C   EL T   
Sbjct: 146 KICDFGLAREYGSPLKPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKP 205

Query: 312 LFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG-----GAQSKDYFDRHGDLKRIRRLK 366
           LF  KS      + D L  + +L+G    KI  G     GA+ K  F ++   +  ++  
Sbjct: 206 LFPGKS------EIDQLNKIFKLLGTPTEKIWPGFSELPGAKKKT-FTKYPYNQLRKKFP 258

Query: 367 FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
             SL     D               L  LL + P KR +A+  L+HP+
Sbjct: 259 ALSLSDNGFD--------------LLNRLLTYDPAKRISAEDALKHPY 292

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 43/173 (24%), Positives = 61/173 (35%), Gaps = 60/173 (34%)

Query: 256 KVVDFGNACRANKQ---FAEEIQ----TRQYRAPEVILRA---GYSFSVDMWSFACTAFE 305
           K+ DFG A +         EE+Q    T  Y APEVI      G+  + D+WS  C   E
Sbjct: 139 KLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLE 198

Query: 306 LATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI---AIGGAQSKDYFDRHGDLKRI 362
           +ATG     P S       ++   +M  +       I        + KD+ DR       
Sbjct: 199 MATGK---RPWSEL-----DNEFQIMFHVGAGHKPPIPDSLQLSPEGKDFLDR------- 243

Query: 363 RRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
                                            L+  P+KRPTA + LQHP++
Sbjct: 244 --------------------------------CLESDPKKRPTASELLQHPFV 264

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 57.0 bits (138), Expect = 6e-09
 Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 15/149 (10%)

Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADG 92
            +Y    K+G G F  V+ A   +T   VALK   ++     F   AL EI++L  +   
Sbjct: 12  SKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLL--- 68

Query: 93  DPSNEKCVIRLID--HFKHAGPNGQH--LCMVLEFLGDSLLRLIKYSRYKGLELNKVREI 148
                + V+ LI+    K    N       +V EF    L  L+     K   L++++++
Sbjct: 69  ---KHENVVNLIEICRTKATPYNRYKGSFYLVFEFCEHDLAGLLSNKNVK-FTLSEIKKV 124

Query: 149 CKYILTGLDYLHRELGIIHTDLKPENILL 177
            K +L GL Y+HR   I+H D+K  NIL+
Sbjct: 125 MKMLLNGLYYIHRN-KILHRDMKAANILI 152

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 56.8 bits (137), Expect = 7e-09
 Identities = 48/149 (32%), Positives = 69/149 (46%), Gaps = 16/149 (10%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVAL-KIQK--SAAQFAQAALHEIEVLSAVADGD 93
           RY+  + +G G F +V  A D  T   VA+ KI K  S    A+    E+++L  +    
Sbjct: 11  RYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHL---- 66

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYIL 153
               + +I L D F    P  + +  V E LG  L RL+       LE   ++     IL
Sbjct: 67  --RHENIISLSDIF--ISPL-EDIYFVTELLGTDLHRLLTSRP---LEKQFIQYFLYQIL 118

Query: 154 TGLDYLHRELGIIHTDLKPENILLVSTID 182
            GL Y+H   G++H DLKP NIL+    D
Sbjct: 119 RGLKYVH-SAGVVHRDLKPSNILINENCD 146

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 56.5 bits (137), Expect = 7e-09
 Identities = 46/180 (25%), Positives = 63/180 (35%), Gaps = 62/180 (34%)

Query: 254 RCKVVDFGNACRANKQFAEEIQTRQ-------YRAPEVILRAGYSFSVDMWSFACTAFEL 306
             K+ DFG A     Q  +E   R        + APEVI R  Y   VD+WS      E+
Sbjct: 154 SVKLADFGFAA----QLTKEKSKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEM 209

Query: 307 ATGD---MLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIR 363
           A G+   +   P               +  L       I   G               I 
Sbjct: 210 AEGEPPYLREPP---------------LRAL-----FLITTKG---------------IP 234

Query: 364 RLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRD 423
            LK         +  ++S     EF +FL   L   PEKRP+A++ LQHP+L       +
Sbjct: 235 PLK---------NPEKWSP----EFKDFLNKCLVKDPEKRPSAEELLQHPFLKKACPKEE 281

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 56.0 bits (136), Expect = 7e-09
 Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 19/143 (13%)

Query: 42  RKLGWGQFSIVWLAYDTRTSSY----VALKIQKSAAQFAQAA--LHEIEVLSAVADGDPS 95
           +KLG G F  V+              VA+K  K  A   Q    L E  ++  +      
Sbjct: 5   KKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKL------ 58

Query: 96  NEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILT 154
           +   V++L+          + L +V+E++ G  LL  ++ +R K L L+ +      I  
Sbjct: 59  DHPNVVKLL----GVCTEEEPLYIVMEYMEGGDLLSYLRKNRPK-LSLSDLLSFALQIAR 113

Query: 155 GLDYLHRELGIIHTDLKPENILL 177
           G++YL      IH DL   N L+
Sbjct: 114 GMEYLES-KNFIHRDLAARNCLV 135

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 56.1 bits (136), Expect = 7e-09
 Identities = 36/110 (32%), Positives = 49/110 (44%), Gaps = 26/110 (23%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ----------YRAPEVILRAGYSF 292
           KPE  L   +   K+VDFG        FA+++++ Q          Y APE+IL  GY F
Sbjct: 120 KPENLLLDSNGYVKLVDFG--------FAKKLKSGQKTWTFCGTPEYVAPEIILNKGYDF 171

Query: 293 SVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI 342
           SVD WS     +EL TG           F ED++    +   I K   K+
Sbjct: 172 SVDYWSLGILLYELLTG--------RPPFGEDDEDPMEIYNDILKGNGKL 213

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 56.2 bits (136), Expect = 9e-09
 Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 28/166 (16%)

Query: 256 KVVDFGNACRAN---KQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDM 311
           K+ DFG A       K    ++ T  YRAPE++L    Y+ ++DMW+  C   EL     
Sbjct: 148 KIADFGLARTYGLPAKPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKP 207

Query: 312 LFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLD 371
           L   KS      + + L L+++L+G     I  G       F     + +   L     +
Sbjct: 208 LLPGKS------EIEQLDLIIQLLGTPNESIWPG-------FSDLPLVGKF-TLPKQPYN 253

Query: 372 RLLVDKYRF---SETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
            L   K++F   SE   R     L  LL + P+KR TA++ L+  +
Sbjct: 254 NL---KHKFPWLSEAGLR----LLNFLLMYDPKKRATAEEALESSY 292

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 56.2 bits (135), Expect = 1e-08
 Identities = 54/178 (30%), Positives = 79/178 (44%), Gaps = 24/178 (13%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMW 297
           KP+  L       K+ DFG A RA     K ++ E+ T  YR P+V+L +  YS  +DMW
Sbjct: 131 KPQNLLINERGELKLADFGLA-RAKSVPTKTYSNEVVTLWYRPPDVLLGSSEYSTQIDMW 189

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
              C  FE+A+G  LF P S       ED L L+  L+G  P +    G  S D F  + 
Sbjct: 190 GVGCIFFEMASGRPLF-PGSTV-----EDELHLIFRLLG-TPTEETWPGISSNDEFKNYN 242

Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
             K       +    L+    R       E  E L   L +  +KR +A++ ++H + 
Sbjct: 243 FPK-------YKPQPLINHAPRLDT----EGIELLTKFLQYESKKRISAEEAMKHAYF 289

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 22/154 (14%)

Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQK----SAAQFAQAALHEIEVLSAVAD 91
           G +  ++K+G GQFS+V+ A        VALK  +      A+  Q  L EI++L     
Sbjct: 2   GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLK---- 57

Query: 92  GDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREIC 149
               +   VI+ +  F         L +VLE    GD L R+IK+ + +   + + R I 
Sbjct: 58  --QLDHPNVIKYLASFIE----NNELNIVLELADAGD-LSRMIKHFKKQKRLIPE-RTIW 109

Query: 150 KYIL---TGLDYLHRELGIIHTDLKPENILLVST 180
           KY +   + L+++H    I+H D+KP N+ + +T
Sbjct: 110 KYFVQLCSALEHMH-SKRIMHRDIKPANVFITAT 142

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 24/178 (13%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVIL-RAGYSFSVDMW 297
           KP+  L       K+ DFG A RA     K ++ E+ T  YR P+++L    YS  +DMW
Sbjct: 131 KPQNLLINERGELKLADFGLA-RAKSIPTKTYSNEVVTLWYRPPDILLGSTDYSTQIDMW 189

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
              C  +E++TG  LF P S       E+ L  +  ++G  P +    G  S + F  + 
Sbjct: 190 GVGCIFYEMSTGRPLF-PGSTV-----EEQLHFIFRILG-TPTEETWPGILSNEEFKSYN 242

Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
             K       +  D L     R  ++D    AE L  LL F   KR +A++ ++HP+ 
Sbjct: 243 YPK-------YRADCLHNHAPRL-DSDG---AELLSKLLQFEGRKRISAEEAMKHPYF 289

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 50/198 (25%), Positives = 76/198 (38%), Gaps = 57/198 (28%)

Query: 252 DMRCKVVDFGNACRANKQF------AEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAF 304
           D+  K+ DFG A   +  +      +E + T+ YR+P ++L    Y+ ++DMW+  C   
Sbjct: 151 DLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFA 210

Query: 305 ELATGDMLFAPKSGQGFCEDEDH-LALMM---------------ELIGKMPRKIAIGGAQ 348
           E+ TG  LFA            H L  M                EL+  +P  +   G +
Sbjct: 211 EMLTGKPLFA----------GAHELEQMQLILESVPVVREEDRNELLNVIPSFVRNDGGE 260

Query: 349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQ 408
                         RR     L  LL            E  +FL  +L F P  R TA++
Sbjct: 261 -------------PRR----PLRDLL-------PGVNPEALDFLEQILTFNPMDRLTAEE 296

Query: 409 CLQHPWLSLRNSTRDETK 426
            L HP++S  +   DE  
Sbjct: 297 ALMHPYMSCYSCPFDEPV 314

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 47/179 (26%), Positives = 65/179 (36%), Gaps = 50/179 (27%)

Query: 243 KPERCLDGIDMRCKVVDFG-------NACRANKQFAEEIQTRQYRAPEVI-LRAGYSFSV 294
           K    L G D   K+ DFG          R  K     + T  + APEV+    GY F  
Sbjct: 129 KAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKA 188

Query: 295 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 354
           D+WSF  TA ELATG    AP S          + ++M  +   P  +  G         
Sbjct: 189 DIWSFGITAIELATGA---APYS------KYPPMKVLMLTLQNDPPSLETG--------- 230

Query: 355 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP 413
                                D  ++S    + F + +   L   P KRPTA++ L+H 
Sbjct: 231 --------------------ADYKKYS----KSFRKMISLCLQKDPSKRPTAEELLKHK 265

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 26/143 (18%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALK-------IQKSAAQFAQAALHEIEVLSAVADGDPSN 96
           +G G F  VWL  D  T    A+K       I+++     +A   E ++L+       ++
Sbjct: 9   IGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRA---ERDILAD------AD 59

Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILT 154
              +++L   F+    + +HL +V+E++  GD +  LI+            R     ++ 
Sbjct: 60  SPWIVKLYYSFQ----DEEHLYLVMEYMPGGDLMNLLIRKDV---FPEETARFYIAELVL 112

Query: 155 GLDYLHRELGIIHTDLKPENILL 177
            LD +H+ LG IH D+KP+NIL+
Sbjct: 113 ALDSVHK-LGFIHRDIKPDNILI 134

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 49/163 (30%)

Query: 256 KVVDFGNACRANKQ-FAEEIQ-TRQYRAPEVILRAG-YSFSVDMWSFACTAFELATGDML 312
           K+ DFG A +  +  FA+  + +  + APEVI + G Y  + D+WS  CT  E+ATG   
Sbjct: 142 KLADFGMAKQVVEFSFAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATG--- 198

Query: 313 FAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDR 372
             P   Q            +E +  + +   IG         R  +L  I          
Sbjct: 199 -KPPWSQ------------LEGVAAVFK---IG---------RSKELPPI---------- 223

Query: 373 LLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
                    +  + E  +F++  L   P  RPTA + L+HP++
Sbjct: 224 --------PDHLSDEAKDFILKCLQRDPSLRPTAAELLEHPFV 258

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 50/177 (28%), Positives = 74/177 (41%), Gaps = 25/177 (14%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L    YS +VD+W
Sbjct: 127 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIW 185

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G     +  G     DY     
Sbjct: 186 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGTPDEVVWPGVTSLPDY---KP 236

Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
              +  R  F  +   L       + D R   + L  +L + P KR +A+  L HP+
Sbjct: 237 SFPKWARQDFSKVVPPL-------DEDGR---DLLSQMLHYDPNKRISAKAALAHPF 283

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 24/142 (16%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRL 103
           LG G F  V+L YD  T   +A+K Q      +     E+  L           +C I+L
Sbjct: 10  LGQGAFGRVYLCYDVDTGRELAVK-QVPFDPDSPETKKEVNAL-----------ECEIQL 57

Query: 104 IDHFKH--------AGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILT 154
           + + +H           + + L + +E++ G S+   +K   Y  L     R+  + IL 
Sbjct: 58  LKNLQHERIVQYYGCLRDDETLSIFMEYMPGGSVKDQLK--AYGALTETVTRKYTRQILE 115

Query: 155 GLDYLHRELGIIHTDLKPENIL 176
           G++YLH  + I+H D+K  NIL
Sbjct: 116 GVEYLHSNM-IVHRDIKGANIL 136

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 52/184 (28%), Positives = 77/184 (41%), Gaps = 37/184 (20%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRAN----KQFAEEIQTRQYRAPEVILRAG-YSFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L +  YS  VD+W
Sbjct: 126 KPQNLLIDREGALKLADFGLA-RAFGVPVRTYTHEVVTLWYRAPEILLGSRQYSTPVDIW 184

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS----KDYF 353
           S  C   E+     LF   S      + D L  +   +G  P +    G  S    K  F
Sbjct: 185 SIGCIFAEMVNRRPLFPGDS------EIDQLFRIFRTLG-TPDEDVWPGVTSLPDYKPTF 237

Query: 354 DR--HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ 411
            +    DL ++      +LD   +D               L  +L + P KR +A+  LQ
Sbjct: 238 PKWARQDLSKV----VPNLDEDGLD--------------LLSKMLVYDPAKRISAKAALQ 279

Query: 412 HPWL 415
           HP+ 
Sbjct: 280 HPYF 283

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 46/166 (27%), Positives = 61/166 (36%), Gaps = 54/166 (32%)

Query: 255 CKVVDFGNACRAN---KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDM 311
            K+ DFG A + N   K  A  + T  + APEVI  +G S + D+WS  CT  EL T   
Sbjct: 138 VKLADFGVATKLNDVSKDDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLT--- 194

Query: 312 LFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR--HGDLKRIRRLKFWS 369
                                   G  P            Y+D      L RI +     
Sbjct: 195 ------------------------GNPP------------YYDLNPMAALFRIVQD---- 214

Query: 370 LDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
                 D     E  + E  +FL+      P  RPTA+Q L+HPW+
Sbjct: 215 ------DHPPLPEGISPELKDFLMQCFQKDPNLRPTAKQLLKHPWI 254

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 42/175 (24%)

Query: 24  YHAVRVGD-----LFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQF--- 75
           +++V VGD     L    RY   + +G G   IV  AYDT T   VA+K  K +  F   
Sbjct: 2   FYSVEVGDSTFTVLK---RYQNLKPIGSGAQGIVCAAYDTVTGQNVAIK--KLSRPFQNV 56

Query: 76  --AQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG-----QHLCMVLEFLGDSL 128
             A+ A  E+ ++  V      N K +I L++ F    P       Q + +V+E +  +L
Sbjct: 57  THAKRAYRELVLMKLV------NHKNIIGLLNVFT---PQKSLEEFQDVYLVMELMDANL 107

Query: 129 LRLIKYSRYKGLELNKVREICKYI----LTGLDYLHRELGIIHTDLKPENILLVS 179
            ++I+      ++L+  R    Y+    L G+ +LH   GIIH DLKP NI++ S
Sbjct: 108 CQVIQ------MDLDHER--MSYLLYQMLCGIKHLHSA-GIIHRDLKPSNIVVKS 153

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 42/155 (27%), Positives = 64/155 (41%), Gaps = 37/155 (23%)

Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKI---QKSAAQFAQAALHEIEVLSAVADGDP 94
           Y     +G G  ++V+ A     +  VA+K    +K           E++ +S       
Sbjct: 3   YELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSV-DELRKEVQAMS------- 54

Query: 95  SNEKCVIRLIDHFKHAGPN----------GQHLCMVLEFL-GDSLLRLIKYS-RYKGLEL 142
                     +H     PN          G  L +V+ +L G SLL ++K S    GL+ 
Sbjct: 55  --------QCNH-----PNVVKYYTSFVVGDELWLVMPYLSGGSLLDIMKSSYPRGGLDE 101

Query: 143 NKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
             +  + K +L GL+YLH   G IH D+K  NILL
Sbjct: 102 AIIATVLKEVLKGLEYLHSN-GQIHRDIKAGNILL 135

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 31/179 (17%)

Query: 254 RCKVVDFGNACRAN---KQFAEE---IQTRQYRAPEVILRAG-YSFSVDMWSFACTAFEL 306
             K+ D G A   N   K  A+    + T  YRAPE++L A  Y+ ++D+W+  C   EL
Sbjct: 150 VVKIGDLGLARLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAEL 209

Query: 307 ATGDMLFAPKSGQGFCEDE----------DHLALMMELIGKMPRKIAIGGAQSKDYFDRH 356
            T + +F          +           D L  + E++G    K        K   +  
Sbjct: 210 LTLEPIF-------KGREAKIKKSNPFQRDQLERIFEVLGTPTEKDWPD---IKKMPEYD 259

Query: 357 GDLKRIRRLKFWSLDRLLVDKY-RFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
             +K  +   + S    L     +  + D++ F   L  LL++ P KR TA++ L+HP+
Sbjct: 260 TLMKDFKTKTYPS--NSLAKWMEKHKKPDSQGFD-LLRKLLEYDPTKRITAEEALEHPY 315

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 43/164 (26%), Positives = 63/164 (38%), Gaps = 48/164 (29%)

Query: 255 CKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDM 311
            K+ DFG + +     A+    I T  + APEVI   GY+   D+WS   TA E+A G  
Sbjct: 138 AKLADFGVSGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEG-- 195

Query: 312 LFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLD 371
              P S       + H    + +I   P         +            +   + WS  
Sbjct: 196 -KPPYS-------DIHPMRAIFMIPNKP-------PPT------------LSDPEKWS-- 226

Query: 372 RLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
                          EF +F+   L   PE+RP+A Q LQHP++
Sbjct: 227 --------------PEFNDFVKKCLVKDPEERPSAIQLLQHPFI 256

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 53.8 bits (129), Expect = 6e-08
 Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 15/144 (10%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ---FAQAALHEIEVLSAVADGD 93
           RY   +++G G +  V  A D RT + VA+K      Q   FA+ A  E+ +L  +   +
Sbjct: 16  RYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHEN 75

Query: 94  PSNEKCVIRLIDHFK--HAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKY 151
                 VI L+D F    +        +V+ F+G  L +L+K+ +   L  ++++ +   
Sbjct: 76  ------VIGLLDVFTPDLSLDRFHDFYLVMPFMGTDLGKLMKHEK---LSEDRIQFLVYQ 126

Query: 152 ILTGLDYLHRELGIIHTDLKPENI 175
           +L GL Y+H   GIIH DLKP N+
Sbjct: 127 MLKGLKYIHAA-GIIHRDLKPGNL 149

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 54.3 bits (130), Expect = 6e-08
 Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 18/169 (10%)

Query: 18  SYRKGGYHAVRVGD-LFNG-GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ- 74
           S     +++V+V D  F    RY   + +G G   IV  A+DT     VA+K      Q 
Sbjct: 1   SEEDSQFYSVQVADSTFTVLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQN 60

Query: 75  --FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF--KHAGPNGQHLCMVLEFLGDSLLR 130
              A+ A  E+ +L  V      N K +I L++ F  + +    Q + +V+E +  +L +
Sbjct: 61  QTHAKRAYRELVLLKCV------NHKNIISLLNVFTPQKSLEEFQDVYLVMELMDANLCQ 114

Query: 131 LIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVS 179
           +I    +  L+  ++  +   +L G+ +LH   GIIH DLKP NI++ S
Sbjct: 115 VI----HMELDHERMSYLLYQMLCGIKHLH-SAGIIHRDLKPSNIVVKS 158

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 53.7 bits (129), Expect = 6e-08
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 24/159 (15%)

Query: 29  VGDLFNG----GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQ----KSAAQFAQAAL 80
           + +LF+       +   R++G G F  V+ A D RT+  VA+K      K + +  Q  +
Sbjct: 4   IAELFSKDDPEKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDII 63

Query: 81  HEIEVLSAVADGDPSNEK-CVIRLIDHFKHAGPNGQHLC-MVLEFLGDSLLRLIKYSRYK 138
            E+  L  +   +    K C +R            +H   +V+E+   S   +++  + K
Sbjct: 64  KEVRFLQQLRHPNTIEYKGCYLR------------EHTAWLVMEYCLGSASDILEVHK-K 110

Query: 139 GLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
            L+  ++  IC   L GL YLH     IH D+K  NILL
Sbjct: 111 PLQEVEIAAICHGALQGLAYLH-SHERIHRDIKAGNILL 148

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 53.6 bits (129), Expect = 7e-08
 Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 41/186 (22%)

Query: 243 KPERCLDGIDMRCKVVDFGNA---CRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWS 298
           KPE  L       K+ DFG A       + + + + TR YRAPE+++    Y  +VD+W+
Sbjct: 127 KPENILVSQSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDTKYGRAVDIWA 186

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD---- 354
             C   E+ TG+ LF   S      D D L  +++ +G +  +        ++ F     
Sbjct: 187 VGCLVTEMLTGEPLFPGDS------DIDQLYHIIKCLGNLIPR-------HQEIFQKNPL 233

Query: 355 ----RHGDLKRIRRL--KFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQ 408
               R  ++K I  L  +F  L  L++D                   L   P+ RP++ Q
Sbjct: 234 FAGMRLPEVKEIEPLEKRFPKLSGLVLD--------------LAKQCLRIDPDDRPSSSQ 279

Query: 409 CLQHPW 414
            L H +
Sbjct: 280 LLHHEF 285

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 53.0 bits (128), Expect = 8e-08
 Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 46/135 (34%)

Query: 281 APEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPR 340
           APEVI ++GY    D+WS   TA ELA G+    P S      D   + ++  +    P 
Sbjct: 166 APEVIKQSGYDEKADIWSLGITAIELAKGE---PPLS------DLHPMRVLFLIPKNNPP 216

Query: 341 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTP 400
            +           + +                       FS    + F +F+   L+  P
Sbjct: 217 SL-----------EGNK----------------------FS----KPFKDFVSLCLNKDP 239

Query: 401 EKRPTAQQCLQHPWL 415
           ++RP+A++ L+H ++
Sbjct: 240 KERPSAKELLKHKFI 254

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 52.9 bits (127), Expect = 8e-08
 Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 13/134 (9%)

Query: 47  GQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAV--ADGDPSNEKCVIRLI 104
           G F  V+LA    T  Y A+K+ K +   A+  +  ++   A+    G+      V +L 
Sbjct: 7   GAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPY---VAKLY 63

Query: 105 DHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHREL 163
             F+    +  +L +V+E+L G     LIK     GL  +  ++    ++ G++ LH+  
Sbjct: 64  YSFQ----SKDYLYLVMEYLNGGDCASLIK--TLGGLPEDWAKQYIAEVVLGVEDLHQR- 116

Query: 164 GIIHTDLKPENILL 177
           GIIH D+KPEN+L+
Sbjct: 117 GIIHRDIKPENLLI 130

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 14/138 (10%)

Query: 43  KLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADGDPSNEKC 99
           K+G G + +V+ A +  T   VALK   +          A+ EI +L  +      N   
Sbjct: 7   KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKEL------NHPN 60

Query: 100 VIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYL 159
           +++L+D           L +V EFL   L + +  S   G+ L  ++     +L GL + 
Sbjct: 61  IVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFC 116

Query: 160 HRELGIIHTDLKPENILL 177
           H    ++H DLKP+N+L+
Sbjct: 117 HSHR-VLHRDLKPQNLLI 133

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 23/177 (12%)

Query: 243 KPERCLDGIDMRCKVVDFGNA---CRANKQFAEEIQTRQYRAPEVIL-RAGYSFSVDMWS 298
           KPE  L     + K+ DFG A         + + + TR YRAPE+++    Y   VD+W+
Sbjct: 127 KPENILITKQGQIKLCDFGFARILTGPGDDYTDYVATRWYRAPELLVGDTQYGPPVDVWA 186

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKM-PRKIAIGGAQSKDYFDRHG 357
             C   EL TG  L+  KS      D D L L+ + +G + PR   I    +  +F   G
Sbjct: 187 IGCVFAELLTGQPLWPGKS------DVDQLYLIRKTLGDLIPRHQQI--FSTNQFF--KG 236

Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
                  L     +     + +F    +   + FL   L   P +R + ++ L+HP+
Sbjct: 237 -------LSIPEPETREPLESKFPNISSPALS-FLKGCLQMDPTERLSCEELLEHPY 285

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 15/144 (10%)

Query: 38  YIAQRKLGWGQFSIVWLAY---DTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDP 94
           +    K+G G F +V+      D R  +   + + K   +  + A+ E  VL+ +     
Sbjct: 2   FEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKL----- 56

Query: 95  SNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYIL 153
            +   +IR  + F     +   L +V+E+     L +L+K  R + L  ++V      IL
Sbjct: 57  -DSSYIIRYYESFL----DKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQIL 111

Query: 154 TGLDYLHRELGIIHTDLKPENILL 177
            GL +LH +  I+H D+K  N+ L
Sbjct: 112 LGLAHLHSK-KILHRDIKSLNLFL 134

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 12/136 (8%)

Query: 43  KLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVI 101
           +LG G F  V+ A +  T +  A K I+  + +  +  + EIE+L+        N   ++
Sbjct: 19  ELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATC------NHPYIV 72

Query: 102 RLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR 161
           +L+  F   G     L +++EF     +  I     +GL   +++ IC+ +L  L YLH 
Sbjct: 73  KLLGAFYWDG----KLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLH- 127

Query: 162 ELGIIHTDLKPENILL 177
            + IIH DLK  N+LL
Sbjct: 128 SMKIIHRDLKAGNVLL 143

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 11/78 (14%)

Query: 243 KPERCLDGIDMRCKVVDFG-----------NACRANKQFAEEIQTRQYRAPEVILRAGYS 291
           KP+  L   +   K+ DFG           N     K+    + T  Y APEVIL  G+S
Sbjct: 120 KPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQGHS 179

Query: 292 FSVDMWSFACTAFELATG 309
            +VD WS  C  +E   G
Sbjct: 180 KTVDWWSLGCILYEFLVG 197

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 34/148 (22%)

Query: 43  KLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIR 102
           K+G G   IV +A D  T   VA+K      Q  +  L               NE  ++R
Sbjct: 26  KIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLF--------------NEVVIMR 71

Query: 103 LIDHFKHAGPN----------GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKY 151
               ++H  PN          G  L +V+EFL G +L  ++ ++R   +   ++  +C  
Sbjct: 72  ---DYQH--PNIVEMYSSYLVGDELWVVMEFLEGGALTDIVTHTR---MNEEQIATVCLA 123

Query: 152 ILTGLDYLHRELGIIHTDLKPENILLVS 179
           +L  L +LH + G+IH D+K ++ILL S
Sbjct: 124 VLKALSFLHAQ-GVIHRDIKSDSILLTS 150

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 243 KPERCLDGIDMRCKVVDFGNAC--RANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP+  L        + DF  A     +        T  Y APEV+ R GYS +VD WS  
Sbjct: 127 KPDNILLDEQGHVHITDFNIATKVTPDTLTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLG 186

Query: 301 CTAFELATG 309
            TA+E   G
Sbjct: 187 VTAYECLRG 195

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 20/146 (13%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ---FAQAALHEIEVLSAVADGD 93
           RY + +++G G +  V  A D RT   VA+K      Q   FA+ A  E+ +L  +    
Sbjct: 16  RYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHM---- 71

Query: 94  PSNEKCVIRLIDHFKHA--GPNGQHLCMVLEFLGDSLLRLIKYSRYKGLEL--NKVREIC 149
               + VI L+D F  A  G   Q   +V+ ++   L       +  G  L  +KV+ + 
Sbjct: 72  --QHENVIGLLDVFTSAVSGDEFQDFYLVMPYMQTDL------QKIMGHPLSEDKVQYLV 123

Query: 150 KYILTGLDYLHRELGIIHTDLKPENI 175
             +L GL Y+H   GIIH DLKP N+
Sbjct: 124 YQMLCGLKYIHSA-GIIHRDLKPGNL 148

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 51.0 bits (123), Expect = 4e-07
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 20/78 (25%)

Query: 243 KPERCLDGIDMR--CKVVDFGNACRANKQFAEEIQTR--------QYRAPEVILRAGYSF 292
           KPE  L  +D     K+ DFG        FA+ ++ R        +Y APE+IL  GY  
Sbjct: 128 KPENLL--LDSDGYIKITDFG--------FAKRVKGRTYTLCGTPEYLAPEIILSKGYGK 177

Query: 293 SVDMWSFACTAFELATGD 310
           +VD W+     +E+  G 
Sbjct: 178 AVDWWALGILIYEMLAGY 195

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 52/180 (28%), Positives = 74/180 (41%), Gaps = 29/180 (16%)

Query: 243 KPERCLDGIDMR--CKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAG-YSFSVD 295
           KP+  L  ID +   K+ DFG A RA     + +  E+ T  YRAPEV+L +  YS  VD
Sbjct: 128 KPQNLL--IDNKGVIKLADFGLA-RAFGIPVRVYTHEVVTLWYRAPEVLLGSPRYSTPVD 184

Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WS      E+AT   LF      G  E  D L  +  ++G     +  G     DY   
Sbjct: 185 IWSIGTIFAEMATKKPLF-----HGDSEI-DQLFRIFRILGTPTEDVWPGVTSLPDY--- 235

Query: 356 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
                       W    L        E    +  + L  +L + P KR +A++ L HP+ 
Sbjct: 236 ------KNTFPKWKKGSLRSAVKNLDE----DGLDLLEKMLIYDPAKRISAKKALNHPYF 285

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 18/146 (12%)

Query: 43  KLGWGQFSIVWLAY--DTRTSSYVALKIQKSAAQ----FAQAALHEIEVLSAVADGDPSN 96
            +G G +  V+ A   + +     A+K  K   +     +Q+A  EI +L  +      +
Sbjct: 7   CIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLREL-----KH 61

Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKG---LELNKVREICKYIL 153
           E  V+ L++ F       + + ++ ++    L ++IK+ R      +  + V+ +   IL
Sbjct: 62  EN-VVSLVEVFLE--HADKSVYLLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQIL 118

Query: 154 TGLDYLHRELGIIHTDLKPENILLVS 179
            G+ YLH    ++H DLKP NIL++ 
Sbjct: 119 NGVHYLHSNW-VLHRDLKPANILVMG 143

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 50.2 bits (120), Expect = 6e-07
 Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 14/147 (9%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN 96
           ++I    +G G F  V+L  +  +   +A+K  +  +  A +   +  +L A+A      
Sbjct: 1   KWIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALA-----R 55

Query: 97  EKCVIRLIDH-----FKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICK 150
           E  +++ + H     +  +  +  HL + LE++ G S+  L+  + Y   E   VR   +
Sbjct: 56  EIALLKELQHENIVQYLGSSLDADHLNIFLEYVPGGSVAALL--NNYGAFEETLVRNFVR 113

Query: 151 YILTGLDYLHRELGIIHTDLKPENILL 177
            IL GL+YLH   GIIH D+K  NIL+
Sbjct: 114 QILKGLNYLHNR-GIIHRDIKGANILV 139

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 50.5 bits (121), Expect = 7e-07
 Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 39/163 (23%)

Query: 35  GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGD 93
           G RY+  R LG G   +V+ A D+     VA+K I  +  Q  + AL EI+         
Sbjct: 4   GSRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIK--------- 54

Query: 94  PSNEKCVIRLIDH------FKHAGPNGQHL-------------CMVLEFLGDSLLRLIKY 134
                 +IR +DH      ++  GP+G  L              +V E++   L  +++ 
Sbjct: 55  ------IIRRLDHDNIVKVYEVLGPSGSDLTEDVGSLTELNSVYIVQEYMETDLANVLEQ 108

Query: 135 SRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
                L     R     +L GL Y+H    ++H DLKP N+ +
Sbjct: 109 GP---LSEEHARLFMYQLLRGLKYIH-SANVLHRDLKPANVFI 147

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 50.0 bits (120), Expect = 9e-07
 Identities = 41/174 (23%), Positives = 61/174 (35%), Gaps = 61/174 (35%)

Query: 254 RCKVVDFGNACRANKQFAEEIQTRQ-------YRAPEVI-----LRAGYSFSVDMWSFAC 301
             K+VDFG     + Q    +  R        + APEVI       A Y    D+WS   
Sbjct: 151 EVKLVDFG----VSAQLDSTLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGI 206

Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
           TA ELA G     P      C+     AL      K+PR                     
Sbjct: 207 TAIELADGK---PP-----LCDMHPMRALF-----KIPRNPP----------------PT 237

Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
           ++  + WS                ++F +F+   L    E+RP  ++ L+HP++
Sbjct: 238 LKSPENWS----------------KKFNDFISECLIKNYEQRPFMEELLEHPFI 275

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 39/147 (26%), Positives = 59/147 (40%), Gaps = 32/147 (21%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQK--SAAQFAQAALHEIEVLSAVADGDPSNEKCVI 101
           LG G F  V+   +     + A+K        Q  Q A+ ++E            E   I
Sbjct: 8   LGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLE-----------QE---I 53

Query: 102 RLIDHFKHAGPN----------GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICK 150
            L+   +H  PN            +L + LE + G SL +L    +Y       +R   +
Sbjct: 54  ALLSKLQH--PNIVQYLGTEREEDNLYIFLELVPGGSLAKL--LKKYGSFPEPVIRLYTR 109

Query: 151 YILTGLDYLHRELGIIHTDLKPENILL 177
            IL GL+YLH     +H D+K  NIL+
Sbjct: 110 QILLGLEYLHDR-NTVHRDIKGANILV 135

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 50.6 bits (121), Expect = 9e-07
 Identities = 74/288 (25%), Positives = 110/288 (38%), Gaps = 46/288 (15%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRL 103
           +G G F  V L     T    A+K    +  F +  L  ++    V     S+   V+ L
Sbjct: 9   IGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAE--SDSPWVVSL 66

Query: 104 IDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR 161
              F+ A    Q+L +++EFL  GD +  LIKY  +     +  R      +  ++ +H+
Sbjct: 67  YYSFQDA----QYLYLIMEFLPGGDLMTMLIKYDTFSE---DVTRFYMAECVLAIEAVHK 119

Query: 162 ELGIIHTDLKPENILLVSTIDPSKDPIRS--GLTPILERPEGSINGGSTSTMTIVEKKLK 219
            LG IH D+KP+NIL    ID       S  GL+    +   S            + ++ 
Sbjct: 120 -LGFIHRDIKPDNIL----IDRGGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRID 174

Query: 220 RRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQY 279
            R   AV +I++  +S   I   K  R L    M    V                 T  Y
Sbjct: 175 NRNSVAVDSINLTMSSKDQIATWKKNRRL----MAYSTVG----------------TPDY 214

Query: 280 RAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDH 327
            APE+ L+ GY    D WS     FE   G   + P     FC +  H
Sbjct: 215 IAPEIFLQQGYGQECDWWSLGAIMFECLIG---WPP-----FCSENSH 254

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of Ace2p activity and cellular morphogenesis) network. CBK1 and Orb6 play similar roles in coordinating cell morphology with cell cycle progression. Ukc1 is involved in morphogenesis, pathogenicity, and pigment formation. Cot1 plays a role in polar tip extension. Length = 377

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 50.1 bits (119), Expect = 9e-07
 Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 17/138 (12%)

Query: 43  KLGWGQFSIVWLAYDTRTSSYVALKI--QKSAAQFAQAALHEIEVLSAVADGDPSNEKCV 100
           ++G G F  V+   D RT   VA+KI   + A    +    EI VLS          +C 
Sbjct: 11  RIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLS----------QCD 60

Query: 101 IRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYL 159
              +  +  +   G  L +++E+L G S L L++   +   +   +  + K IL GLDYL
Sbjct: 61  SPYVTKYYGSYLKGTKLWIIMEYLGGGSALDLLRAGPFDEFQ---IATMLKEILKGLDYL 117

Query: 160 HRELGIIHTDLKPENILL 177
           H E   IH D+K  N+LL
Sbjct: 118 HSEKK-IHRDIKAANVLL 134

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 50.1 bits (120), Expect = 9e-07
 Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 26/101 (25%)

Query: 255 CKVVDFGNACR-----------------ANKQFAEEIQTRQYRAPEVILRAG-YSFSVDM 296
           CK+ DFG A R                   ++   ++ T  YRAPE+++ A  Y F+VDM
Sbjct: 158 CKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDM 217

Query: 297 WSFACTAFELATGDMLFAPKSGQGFCEDE-DHLALMMELIG 336
           WS  C   EL TG  LF         E+E D L  + EL+G
Sbjct: 218 WSVGCIFAELLTGKPLFPG-------ENEIDQLGRIFELLG 251

Length = 335

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 23/90 (25%)

Query: 243 KPERCLDGIDMRCKVVDFGNAC--------RANKQFAEEIQ---------------TRQY 279
           KPE  L   DM  K+ DFG A          +NK  A  I                T +Y
Sbjct: 129 KPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEY 188

Query: 280 RAPEVILRAGYSFSVDMWSFACTAFELATG 309
            +PE++       S D+W+  C  +++ TG
Sbjct: 189 VSPELLNEKPAGKSSDLWALGCIIYQMLTG 218

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 26/149 (17%)

Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNE 97
           +    KLG G ++ V+   +  T   VALK              EI + +   +G PS  
Sbjct: 2   FKQLEKLGEGTYATVYKGRNRTTGEIVALK--------------EIHLDAE--EGTPSTA 45

Query: 98  KCVIRLIDHFKHAGPNGQH--------LCMVLEFLGDSLLRLIK-YSRYKGLELNKVREI 148
              I L+   KH      H        L +V E++   L + +  +     L+ N V+  
Sbjct: 46  IREISLMKELKHENIVRLHDVIHTENKLMLVFEYMDKDLKKYMDTHGVRGALDPNTVKSF 105

Query: 149 CKYILTGLDYLHRELGIIHTDLKPENILL 177
              +L G+ + H E  ++H DLKP+N+L+
Sbjct: 106 TYQLLKGIAFCH-ENRVLHRDLKPQNLLI 133

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 45/170 (26%), Positives = 64/170 (37%), Gaps = 46/170 (27%)

Query: 33  FN-GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQ-FAQAALHEIEVLSAV 89
           F+ G RY     +G G + +V  A    T   VA+K I     Q F Q  L EI++L   
Sbjct: 1   FDVGPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILR-- 58

Query: 90  ADGDPSNEKCVIRLIDHFKHAG-------------PNGQHLCMVLEFLGDSLLRLIKYSR 136
                            FKH                +   + +V E +   L +LIK   
Sbjct: 59  ----------------RFKHENIIGILDIIRPPSFESFNDVYIVQELMETDLYKLIKTQH 102

Query: 137 YKGLELNKVREICKY----ILTGLDYLHRELGIIHTDLKPENILLVSTID 182
                     +  +Y    IL GL Y+H    ++H DLKP N+LL +  D
Sbjct: 103 LSN-------DHIQYFLYQILRGLKYIHSA-NVLHRDLKPSNLLLNTNCD 144

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 37/150 (24%), Positives = 56/150 (37%), Gaps = 26/150 (17%)

Query: 42  RKLGWGQFSIVWLA-YDTRTSSY--VALKIQKSAAQFAQ--AALHEIEVLSAVADGDPSN 96
           +KLG G F  V+      +      VA+K  K  A   +    L E  V+  +       
Sbjct: 1   KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKL------G 54

Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVR-------E 147
              V+RL+          + L +VLE++  GD LL  ++ SR       K          
Sbjct: 55  HPNVVRLL----GVCTEEEPLYLVLEYMEGGD-LLDYLRKSRPVFPSPEKSTLSLKDLLS 109

Query: 148 ICKYILTGLDYLHRELGIIHTDLKPENILL 177
               I  G++YL      +H DL   N L+
Sbjct: 110 FAIQIAKGMEYLA-SKKFVHRDLAARNCLV 138

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 24/178 (13%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMW 297
           KP+  L       K+ DFG A RA     K ++ E+ T  YR P+V+L +  YS  +DMW
Sbjct: 130 KPQNLLINEKGELKLADFGLA-RAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMW 188

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
              C  +E+ATG  +F P S       ++ L L+  L+G  P +    G  S + F  + 
Sbjct: 189 GVGCILYEMATGRPMF-PGSTV-----KEELHLIFRLLG-TPTEETWPGITSNEEFRSYL 241

Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
             +   +       RL        +TD     + L  LL +  + R +A+  L+H + 
Sbjct: 242 FPQYRAQPLINHAPRL--------DTDG---IDLLSSLLLYETKSRISAEAALRHSYF 288

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 53/185 (28%), Positives = 74/185 (40%), Gaps = 40/185 (21%)

Query: 243 KPERCLDGIDMR---CKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSV 294
           KP+  L  ID R    K+ DFG A RA     + F  E+ T  YRAPE++L +  YS  V
Sbjct: 129 KPQNLL--IDRRTNALKLADFGLA-RAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPV 185

Query: 295 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 354
           D+WS  C   E+     LF   S      + D L  +  ++G    +   G     DY  
Sbjct: 186 DIWSVGCIFAEMVNQKPLFPGDS------EIDELFKIFRILGTPNEETWPGVTSLPDYKS 239

Query: 355 -----RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQC 409
                   DL  +      +L+   VD               L  +L   P KR TA+  
Sbjct: 240 AFPKWPPKDLATV----VPTLEPAGVD--------------LLSKMLRLDPSKRITARAA 281

Query: 410 LQHPW 414
           L+H +
Sbjct: 282 LEHEY 286

Length = 294

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 43/176 (24%), Positives = 58/176 (32%), Gaps = 46/176 (26%)

Query: 243 KPERCLDGIDMRCKVVDFG---NACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSF 299
           KP   L       K+ DFG          Q    + T  Y +PE I    YS++ D+WS 
Sbjct: 127 KPSNLLINSKGEVKIADFGISKVLENTLDQCNTFVGTVTYMSPERIQGESYSYAADIWSL 186

Query: 300 ACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDL 359
             T  E A G   F P     F E       +M+ I                        
Sbjct: 187 GLTLLECALGKFPFLPPGQPSFFE-------LMQAI-----------CDGPPPSLPAE-- 226

Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
                               FS     EF +F+   L   P+KRP+A + LQHP++
Sbjct: 227 -------------------EFSP----EFRDFISACLQKDPKKRPSAAELLQHPFI 259

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 15/143 (10%)

Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ---FAQAALHEIEVLSAVADGDPSNEK 98
           R +G+G F +VW   D R    VALK   +  Q     +    E+++L            
Sbjct: 6   RPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFF------KHD 59

Query: 99  CVIRLIDHFK--HAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGL 156
            V+  +D  +  H  P  + + +V E +   L ++I     + L  + V+     IL GL
Sbjct: 60  NVLSALDILQPPHIDPF-EEIYVVTELMQSDLHKII--VSPQPLSSDHVKVFLYQILRGL 116

Query: 157 DYLHRELGIIHTDLKPENILLVS 179
            YLH   GI+H D+KP N+L+ S
Sbjct: 117 KYLHSA-GILHRDIKPGNLLVNS 138

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 37/143 (25%), Positives = 55/143 (38%), Gaps = 26/143 (18%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAA----LHEIEVLSAVADGDPSNEKC 99
           LG G F  V L      +   ALK  K               E E+L         N   
Sbjct: 1   LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEEC------NHPF 54

Query: 100 VIRLIDHFKHAGPNGQHLCMVLEF-----LGDSLLRLIKYSRYKGLELNKVREICKYILT 154
           +++L   FK    + +++ M++E+     L   L     +  Y        R     ++ 
Sbjct: 55  IVKLYRTFK----DKKYIYMLMEYCLGGELWTILRDRGLFDEYTA------RFYIACVVL 104

Query: 155 GLDYLHRELGIIHTDLKPENILL 177
             +YLH   GII+ DLKPEN+LL
Sbjct: 105 AFEYLHN-RGIIYRDLKPENLLL 126

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 15/145 (10%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADGD 93
           +Y   R +G G F IV L         V +K   +++       AA +E +VL  +    
Sbjct: 1   KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLL---- 56

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYI 152
             +   +I   ++F       + L +V+E+  G +L   I+      L+ + +      I
Sbjct: 57  --SHPNIIEYYENFLE----DKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQI 110

Query: 153 LTGLDYLHRELGIIHTDLKPENILL 177
           L  L ++H +L I+H DLK +NILL
Sbjct: 111 LLALHHVHTKL-ILHRDLKTQNILL 134

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 50/168 (29%), Positives = 71/168 (42%), Gaps = 30/168 (17%)

Query: 259 DFGNAC-----RANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATG-D 310
           DFG AC      ANK +  A  I T    APE++ R  Y  +VD+WS     FE+AT  D
Sbjct: 225 DFGAACFPVDINANKYYGWAGTIATN---APELLARDPYGPAVDIWSAGIVLFEMATCHD 281

Query: 311 MLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRR----LK 366
            LF      G C+ +  + L++   G  P +  I  AQ+       G  K+  R      
Sbjct: 282 SLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPI-DAQANLDEIYIGLAKKSSRKPGSRP 340

Query: 367 FWS-LDRLLVDKYRFSETDAREFAEFLV-PLLDFTPEKRPTAQQCLQH 412
            W+ L  L +D             E+L+  +L F    RP+A+  L  
Sbjct: 341 LWTNLYELPID------------LEYLICKMLAFDAHHRPSAEALLDF 376

Length = 391

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 14/139 (10%)

Query: 41  QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALH-EIEVLSAVADGDPSNEKC 99
            +++G G +  V+ A D  T   VA+K+ K         +  EI +L          ++C
Sbjct: 8   IQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISML----------KEC 57

Query: 100 VIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKG-LELNKVREICKYILTGLDY 158
               I  +  +      L +V+E+ G   L+ I Y   +G L   ++  +C+  L GL Y
Sbjct: 58  RHPNIVAYFGSYLRRDKLWIVMEYCGGGSLQDI-YQVTRGPLSELQIAYVCRETLKGLAY 116

Query: 159 LHRELGIIHTDLKPENILL 177
           LH E G IH D+K  NILL
Sbjct: 117 LH-ETGKIHRDIKGANILL 134

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 23/146 (15%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRL 103
           LG G FS  + A D +T + +A+K Q +  +    +  + EV+ A+           IRL
Sbjct: 8   LGTGAFSSCYQARDVKTGTLMAVK-QVTYVR--NTSSEQEEVVEALRKE--------IRL 56

Query: 104 IDHFKH--------AGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILT 154
           +    H        A     H  + +E++ G S+  L+  S+Y   +   +    + +L 
Sbjct: 57  MARLNHPHIIRMLGATCEDSHFNLFVEWMAGGSVSHLL--SKYGAFKEAVIINYTEQLLR 114

Query: 155 GLDYLHRELGIIHTDLKPENILLVST 180
           GL YLH E  IIH D+K  N+L+ ST
Sbjct: 115 GLSYLH-ENQIIHRDVKGANLLIDST 139

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 34/150 (22%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKI--------QKSAAQFAQAALHEIEVLSAVADGDPS 95
           +G G +  V+      T   VALKI          S  Q       E+ +LS +    P 
Sbjct: 9   IGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQ------REVALLSQLRQSQPP 62

Query: 96  NEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYS----RYKGLELNKVREICK 150
           N   + +    +      G  L +++E+  G S+  L+K      +Y  +       I +
Sbjct: 63  N---ITKYYGSYL----KGPRLWIIMEYAEGGSVRTLMKAGPIAEKYISV-------IIR 108

Query: 151 YILTGLDYLHRELGIIHTDLKPENILLVST 180
            +L  L Y+H+  G+IH D+K  NIL+ +T
Sbjct: 109 EVLVALKYIHKV-GVIHRDIKAANILVTNT 137

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 48.9 bits (116), Expect = 3e-06
 Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 15/144 (10%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ---FAQAALHEIEVLSAVADGD 93
           RY     +G G +  V  AYDTR    VA+K      Q    A+    E+ +L  +    
Sbjct: 16  RYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHM---- 71

Query: 94  PSNEKCVIRLIDHFKHA--GPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKY 151
               + VI L+D F  A    N   + +V   +G  L  ++K  +   L    V+ +   
Sbjct: 72  --KHENVIGLLDVFTPATSIENFNEVYLVTNLMGADLNNIVKCQK---LSDEHVQFLIYQ 126

Query: 152 ILTGLDYLHRELGIIHTDLKPENI 175
           +L GL Y+H   GIIH DLKP N+
Sbjct: 127 LLRGLKYIH-SAGIIHRDLKPSNV 149

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 47/138 (34%), Positives = 65/138 (47%), Gaps = 17/138 (12%)

Query: 43  KLGWGQFSIVWLAYDTRTSSYVALKI--QKSAAQFAQAALHEIEVLSAVADGDPSNEKCV 100
           ++G G F  V+   D RT   VA+KI   + A    +    EI VLS          +C 
Sbjct: 11  RIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLS----------QCD 60

Query: 101 IRLIDHFKHAGPNGQHLCMVLEFLGD-SLLRLIKYSRYKGLELNKVREICKYILTGLDYL 159
              I  +  +   G  L +++E+LG  S L L+K      LE   +  I + IL GLDYL
Sbjct: 61  SPYITRYYGSYLKGTKLWIIMEYLGGGSALDLLKPGP---LEETYIATILREILKGLDYL 117

Query: 160 HRELGIIHTDLKPENILL 177
           H E   IH D+K  N+LL
Sbjct: 118 HSERK-IHRDIKAANVLL 134

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 243 KPERCLDGIDMRCKVVDFG---NACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSF 299
           KPE  L   +   K+ DFG    +    K+      T +Y APEV+ R G++ S D WSF
Sbjct: 125 KPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSF 184

Query: 300 ACTAFELATGDMLFAPK 316
               FE+ TG + F  K
Sbjct: 185 GVLMFEMLTGSLPFQGK 201

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 38/142 (26%), Positives = 58/142 (40%), Gaps = 16/142 (11%)

Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKI----QKSAAQFAQAALHEIEVLSAVADGDPSNE 97
            +LG G   +V       T   +A+K        A Q  +  L E+++L           
Sbjct: 7   GELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQ--KQILRELDIL----------H 54

Query: 98  KCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLD 157
           KC    I  F  A  N   + + +E++    L  I       +    + +I   +L GL 
Sbjct: 55  KCNSPYIVGFYGAFYNNGDISICMEYMDGGSLDKILKEVQGRIPERILGKIAVAVLKGLT 114

Query: 158 YLHRELGIIHTDLKPENILLVS 179
           YLH +  IIH D+KP NIL+ S
Sbjct: 115 YLHEKHKIIHRDVKPSNILVNS 136

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 82  EIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLE 141
           EI++L  +      + + +I LI  ++        +CMV+      L   +   R   L 
Sbjct: 136 EIDILKTI------SHRAIINLIHAYR----WKSTVCMVMPKYKCDLFTYVD--RSGPLP 183

Query: 142 LNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
           L +   I + +L  L YLH   GIIH D+K ENI L
Sbjct: 184 LEQAITIQRRLLEALAYLH-GRGIIHRDVKTENIFL 218

Length = 392

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 48.5 bits (115), Expect = 4e-06
 Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 18/169 (10%)

Query: 18  SYRKGGYHAVRVGD--LFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ- 74
           S R   +++V +GD       RY   + +G G   IV  AYD      VA+K      Q 
Sbjct: 4   SKRDNNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQN 63

Query: 75  --FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF--KHAGPNGQHLCMVLEFLGDSLLR 130
              A+ A  E+ ++  V      N K +I L++ F  + +    Q + +V+E +  +L +
Sbjct: 64  QTHAKRAYRELVLMKCV------NHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQ 117

Query: 131 LIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVS 179
           +I+      L+  ++  +   +L G+ +LH   GIIH DLKP NI++ S
Sbjct: 118 VIQME----LDHERMSYLLYQMLCGIKHLH-SAGIIHRDLKPSNIVVKS 161

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 55/176 (31%), Positives = 71/176 (40%), Gaps = 24/176 (13%)

Query: 3   CSSSSGSEDDDEGIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSS 62
             S+S S+DDD+  D        A  V        Y   + L  G    V++A       
Sbjct: 38  DDSASESDDDDD--DGLIPTKQKAREVVASLG---YTVIKTLTPGSEGRVFVATKPGQPD 92

Query: 63  YVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVL- 121
            V LKI +      +A L     L  V      N   VIR+ D        G   CMVL 
Sbjct: 93  PVVLKIGQKGTTLIEAML-----LQNV------NHPSVIRMKDTLVS----GAITCMVLP 137

Query: 122 EFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
            +  D    L K SR   L +++   I K IL GL YLH +  IIH D+K ENI +
Sbjct: 138 HYSSDLYTYLTKRSR--PLPIDQALIIEKQILEGLRYLHAQ-RIIHRDVKTENIFI 190

Length = 357

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 243 KPERCLDGIDMRCKVVDFGNAC--RANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KPE  L       ++ D G A   +  K+      T  Y APEV+    Y FSVD ++  
Sbjct: 122 KPENVLLDDHGNVRISDLGLAVELKGGKKIKGRAGTPGYMAPEVLQGEVYDFSVDWFALG 181

Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMME 333
           CT +E+  G   F  +  +   E+     L M 
Sbjct: 182 CTLYEMIAGRSPFRQRKEKVEKEELKRRTLEMA 214

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 4/60 (6%)

Query: 119 MVLEFLGDSLL-RLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
           +V EF+  ++L  L KY    GL+ ++VR+    IL G+++ H    IIH D+KPENIL+
Sbjct: 77  LVFEFVDHTVLDDLEKYP--NGLDESRVRKYLFQILRGIEFCHSH-NIIHRDIKPENILV 133

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 47.5 bits (113), Expect = 5e-06
 Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 255 CKVVDFGNACR---ANKQFAEEIQTRQYRAPEVILRA--GYSFSVDMWSFACTAFELATG 309
            K+ DFG + R    N        T QY APEVI +   GY    D+WS  CT  E+ATG
Sbjct: 148 VKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATG 207

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 47.5 bits (113), Expect = 5e-06
 Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 14/141 (9%)

Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVI 101
           +KLG GQF  VW+ Y     + VA+K  K  +   +A L E  ++  +      + + V 
Sbjct: 12  KKLGAGQFGEVWMGY-YNGHTKVAIKSLKQGSMSPEAFLAEANLMKQL-----QHPRLV- 64

Query: 102 RLIDHFKHAGPNGQHLCMVLEFLGD-SLLRLIKYSRYKGLELNKVREICKYILTGLDYLH 160
           RL     +A    + + ++ E++ + SL+  +K      L +NK+ ++   I  G+ ++ 
Sbjct: 65  RL-----YAVVTQEPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIE 119

Query: 161 RELGIIHTDLKPENILLVSTI 181
           R+   IH DL+  NIL+  T+
Sbjct: 120 RK-NYIHRDLRAANILVSETL 139

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 47.8 bits (113), Expect = 5e-06
 Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 11/164 (6%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRL 103
           +G G +  V+     +T    A+K+        +    EI +L        S+ + +   
Sbjct: 14  VGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKY-----SHHRNIATY 68

Query: 104 IDHFKHAGPNG--QHLCMVLEFLG-DSLLRLIKYSRYKGLELNKVREICKYILTGLDYLH 160
              F    P G    L +V+EF G  S+  LIK ++   L+   +  IC+ IL GL +LH
Sbjct: 69  YGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLH 128

Query: 161 RELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSIN 204
           +   +IH D+K +N+LL  T +     +  G++  L+R  G  N
Sbjct: 129 QH-KVIHRDIKGQNVLL--TENAEVKLVDFGVSAQLDRTVGRRN 169

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 35/140 (25%), Positives = 69/140 (49%), Gaps = 19/140 (13%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAAL----HEIEVLSAVADGDPSNEKC 99
           +G G F  V +  +  T    A+K+ K +   AQ  +     E ++LS       SN   
Sbjct: 9   VGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSI------SNSPW 62

Query: 100 VIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKG-LELNKVREICKYILTGLD 157
           + +L    ++A  +  +L +V+E+  G  LL L+  +RY+   + +  +     ++  + 
Sbjct: 63  IPQL----QYAFQDKDNLYLVMEYQPGGDLLSLL--NRYEDQFDEDMAQFYLAELVLAIH 116

Query: 158 YLHRELGIIHTDLKPENILL 177
            +H ++G +H D+KPEN+L+
Sbjct: 117 SVH-QMGYVHRDIKPENVLI 135

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnormal cytokinesis and massive apoptosis in neuronal precursors. A Down syndrome critical region protein TTC3 interacts with CRIK and inhibits CRIK-dependent neuronal differentiation and neurite extension. Length = 330

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 14/136 (10%)

Query: 43  KLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIR 102
           KLG G +  V+ A    T   VA+K+        Q  + EI +L          ++C   
Sbjct: 10  KLGEGSYGSVYKAIHKETGQVVAIKVVPVEEDL-QEIIKEISIL----------KQCDSP 58

Query: 103 LIDHFKHAGPNGQHLCMVLEFLG-DSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR 161
            I  +  +      L +V+E+ G  S+  ++K    K L   ++  I    L GL+YLH 
Sbjct: 59  YIVKYYGSYFKNTDLWIVMEYCGAGSVSDIMK-ITNKTLTEEEIAAILYQTLKGLEYLHS 117

Query: 162 ELGIIHTDLKPENILL 177
               IH D+K  NILL
Sbjct: 118 -NKKIHRDIKAGNILL 132

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 20/146 (13%)

Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKS---AAQFAQAALHEIEVLSAVADGD 93
           +   R +G G F  V +     T    A+K + K         +  L+E  +L  +    
Sbjct: 2   FELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQEL---- 57

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLR--LIKYSRYKGLELNKVREICKY 151
             N   ++ L   F+    + +++ +V++ L    LR  L +  ++      +V+     
Sbjct: 58  --NHPFLVNLWYSFQ----DEENMYLVVDLLLGGDLRYHLSQKVKFSE---EQVKFWICE 108

Query: 152 ILTGLDYLHRELGIIHTDLKPENILL 177
           I+  L+YLH   GIIH D+KP+NILL
Sbjct: 109 IVLALEYLH-SKGIIHRDIKPDNILL 133

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 40/140 (28%), Positives = 58/140 (41%), Gaps = 20/140 (14%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRL 103
           +G G F  V L  D  +  Y ALK+               EV+    +    NEK V++ 
Sbjct: 9   VGTGTFGRVHLVRDRISEHYYALKVMAIP-----------EVIRLKQEQHVHNEKRVLKE 57

Query: 104 IDH-----FKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKV-REICKYILTGLD 157
           + H           + + L M++E++      L  Y R  G   N         I+  L+
Sbjct: 58  VSHPFIIRLFWTEHDQRFLYMLMEYVPGG--ELFSYLRNSGRFSNSTGLFYASEIVCALE 115

Query: 158 YLHRELGIIHTDLKPENILL 177
           YLH    I++ DLKPENILL
Sbjct: 116 YLH-SKEIVYRDLKPENILL 134

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 47.3 bits (112), Expect = 6e-06
 Identities = 52/175 (29%), Positives = 78/175 (44%), Gaps = 25/175 (14%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEE--IQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP+  L     + K+ DFG A   + Q A    + T  YRAPEV+L++ Y+  VD+WS  
Sbjct: 137 KPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVG 196

Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
           C   E+     LF   S      D D L  ++++IG +P          +D+        
Sbjct: 197 CIFAEMFRRKPLFRGSS------DVDQLGKILDVIG-LP--------GEEDWPRDVA--- 238

Query: 361 RIRRLKFWSLDRLLVDKYRFSETDAREFA-EFLVPLLDFTPEKRPTAQQCLQHPW 414
            + R  F S     ++K+    TD  E   + L+  L F P KR +A   L HP+
Sbjct: 239 -LPRQAFHSKSAQPIEKF---VTDIDELGKDLLLKCLTFNPAKRISAYSALSHPY 289

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 47.4 bits (113), Expect = 7e-06
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 31/147 (21%)

Query: 43  KLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIR 102
           ++G G + IV+ A DT +   VALK  +               +    DG P +    I 
Sbjct: 14  RIGEGTYGIVYRARDTTSGEIVALKKVR---------------MDNERDGIPISSLREIT 58

Query: 103 LIDHFKHAGPN---------GQHL---CMVLEFLGDSLLRLIKYSRYKGLELNKVREICK 150
           L+ + +H  PN         G+HL    +V+E+    L  L+  +       ++V+ +  
Sbjct: 59  LLLNLRH--PNIVELKEVVVGKHLDSIFLVMEYCEQDLASLL-DNMPTPFSESQVKCLML 115

Query: 151 YILTGLDYLHRELGIIHTDLKPENILL 177
            +L GL YLH    IIH DLK  N+LL
Sbjct: 116 QLLRGLQYLHENF-IIHRDLKVSNLLL 141

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 47.0 bits (112), Expect = 7e-06
 Identities = 47/181 (25%), Positives = 65/181 (35%), Gaps = 47/181 (25%)

Query: 256 KVVDFGNACRA-NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFA 314
           K+ DFG +    N        T  Y APE I    YS + D+WS   T  E+A     F 
Sbjct: 145 KLCDFGVSGELVNSLAGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFP 204

Query: 315 PKSGQGFCEDEDHLAL--MMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDR 372
           P       E E  L    ++  I  MP        + KD      +         WS   
Sbjct: 205 P-------EGEPPLGPIELLSYIVNMPN------PELKD------EPGNGI---KWS--- 239

Query: 373 LLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVE 432
                         EF +F+   L+  P +RPT    L+HPW+      + + K K N+ 
Sbjct: 240 -------------EEFKDFIKQCLEKDPTRRPTPWDMLEHPWI------KAQMKKKVNMA 280

Query: 433 K 433
           K
Sbjct: 281 K 281

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 47.4 bits (112), Expect = 8e-06
 Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 18/163 (11%)

Query: 24  YHAVRVGD--LFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ---FAQA 78
           +++V VGD       RY   + +G G   IV  AYD      VA+K      Q    A+ 
Sbjct: 3   FYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKR 62

Query: 79  ALHEIEVLSAVADGDPSNEKCVIRLIDHF--KHAGPNGQHLCMVLEFLGDSLLRLIKYSR 136
           A  E+ ++  V      N K +I L++ F  + +    Q + +V+E +  +L ++I+   
Sbjct: 63  AYRELVLMKCV------NHKNIISLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIQME- 115

Query: 137 YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVS 179
              L+  ++  +   +L G+ +LH   GIIH DLKP NI++ S
Sbjct: 116 ---LDHERMSYLLYQMLCGIKHLH-SAGIIHRDLKPSNIVVKS 154

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

 Score = 46.9 bits (111), Expect = 8e-06
 Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 14/141 (9%)

Query: 43  KLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVI 101
           +LG G F  V+ A +  T    A K I   + +  +  + EI++L   A  D  N   ++
Sbjct: 12  ELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDIL---ASCDHPN---IV 65

Query: 102 RLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR 161
           +L+D F +      +L +++EF     +  +     + L   ++R +CK  L  L+YLH 
Sbjct: 66  KLLDAFYYE----NNLWILIEFCAGGAVDAVMLELERPLTEPQIRVVCKQTLEALNYLH- 120

Query: 162 ELGIIHTDLKPENILLVSTID 182
           E  IIH DLK  NIL   T+D
Sbjct: 121 ENKIIHRDLKAGNILF--TLD 139

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 46.8 bits (112), Expect = 9e-06
 Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 15/135 (11%)

Query: 47  GQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADGDPSNEKCV-IR 102
           G + +V+ A D +T   VALK   ++K    F   +L EI +L  +      +   V ++
Sbjct: 16  GTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKL-----QHPNIVTVK 70

Query: 103 LIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRE 162
            +      G N   + MV+E++   L  L++  +      ++V+ +   +L+G+ +LH +
Sbjct: 71  EV----VVGSNLDKIYMVMEYVEHDLKSLMETMKQ-PFLQSEVKCLMLQLLSGVAHLH-D 124

Query: 163 LGIIHTDLKPENILL 177
             I+H DLK  N+LL
Sbjct: 125 NWILHRDLKTSNLLL 139

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

 Score = 47.0 bits (111), Expect = 9e-06
 Identities = 48/179 (26%), Positives = 74/179 (41%), Gaps = 21/179 (11%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMW 297
           KP+  L       K+ DFG A RA    +  ++ E+ T  YR P+V+L +  YS  +DMW
Sbjct: 130 KPQNLLISDTGELKLADFGLA-RAKSVPSHTYSNEVVTLWYRPPDVLLGSTEYSTCLDMW 188

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
              C   E+  G   F      G  + +D L  +  ++G  P +    G  S  +F    
Sbjct: 189 GVGCIFVEMIQGVAAFP-----GMKDIQDQLERIFLVLG-TPNEDTWPGVHSLPHF---- 238

Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
              +  R   +S   L     + S  +  E  +    LL   P+ R +AQ  L H + S
Sbjct: 239 ---KPERFTLYSPKNLRQAWNKLSYVNHAE--DLASKLLQCFPKNRLSAQAALSHEYFS 292

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 and is inhibited by the p21 cell cycle inhibitor. It has also been shown to interact with the membrane-associated cyclin Y, which recruits the protein to the plasma membrane. Length = 303

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 34/159 (21%), Positives = 53/159 (33%), Gaps = 48/159 (30%)

Query: 256 KVVDFGNACRANKQFAE-EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFA 314
           K+ D G +    K  A+ +I T  Y APEV     YS+  D+WS  C  +E+AT    F 
Sbjct: 143 KIGDLGISKVLKKNMAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFE 202

Query: 315 PKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLL 374
            +S             M +L  K+ R            +                     
Sbjct: 203 ARS-------------MQDLRYKVQR----------GKYP-------------------- 219

Query: 375 VDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP 413
                     +++   F+  +L   P+ RP   + L  P
Sbjct: 220 ----PIPPIYSQDLQNFIRSMLQVKPKLRPNCDKILASP 254

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 18/153 (11%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN 96
           RYI Q++LG G F  V+L  D +  +   LK+ K   +     L+  E + A      + 
Sbjct: 1   RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLK---EIPVGELNPNETVQA------NQ 51

Query: 97  EKCVIRLIDH-----FKHAGPNGQHLCMVLEFLGDSLL--RLIKYSRY-KGLELNKVREI 148
           E  ++  +DH     F  +       C++ E+     L  +L +     K L  N+V E 
Sbjct: 52  EAQLLSKLDHPAIVKFHASFLERDAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEW 111

Query: 149 CKYILTGLDYLHRELGIIHTDLKPENILLVSTI 181
              +L G+ Y+H +  I+H DLK +NI L + +
Sbjct: 112 FIQLLLGVHYMH-QRRILHRDLKAKNIFLKNNL 143

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M checkpoint. Nek11 may also play a role in the S-phase checkpoint as well as in DNA replication and genotoxic stress responses. Length = 260

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 9/63 (14%)

Query: 256 KVVDFGNACR-----ANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWSFACTAFEL 306
           K++DFG A R      +   +  ++    T  + APEVI  +GY    D+WS  CT FE+
Sbjct: 142 KLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEM 201

Query: 307 ATG 309
           ATG
Sbjct: 202 ATG 204

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 37/172 (21%)

Query: 256 KVVDFGNACRANKQ----FAEEIQTRQYRAPEVIL-RAGYSFSVDMWSFACTAFELATGD 310
           K+ DFG A   N +    +  ++ T  YR PE++L    Y  ++D+WS  C   EL T  
Sbjct: 156 KLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKK 215

Query: 311 MLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSL 370
            +F     Q   E        +ELI +      + G+     +        + +L +++ 
Sbjct: 216 PIF-----QANQE-----LAQLELISR------LCGSPCPAVW------PDVIKLPYFNT 253

Query: 371 -------DRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
                   R L +++ F  T A    + L  +L   P KR TA++ L  PWL
Sbjct: 254 MKPKKQYRRRLREEFSFIPTPA---LDLLDHMLTLDPSKRCTAEEALNSPWL 302

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 21/144 (14%)

Query: 42  RKLGWGQFSIVWLAY----DTRTSSYVALKIQKSAAQFAQAA--LHEIEVLSAVADGDPS 95
           +KLG G F  V+          T + VA+K  K  A   +    L E  ++  +      
Sbjct: 5   KKLGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKL------ 58

Query: 96  NEKCVIRLIDHFKHAGPNGQHLCMVLEF--LGDSLLRLIKYSRYKGLELNKVREICKYIL 153
           +   ++RL+         G+ L +V E+   GD L  L K+     L L  + ++   I 
Sbjct: 59  SHPNIVRLL----GVCTQGEPLYIVTEYMPGGDLLDFLRKHGE--KLTLKDLLQMALQIA 112

Query: 154 TGLDYLHRELGIIHTDLKPENILL 177
            G++YL      +H DL   N L+
Sbjct: 113 KGMEYLE-SKNFVHRDLAARNCLV 135

Length = 258

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 17/138 (12%)

Query: 43  KLGWGQFSIVWLAYDTRTSSYVALKI--QKSAAQFAQAALHEIEVLSAVADGDPSNEKCV 100
           K+G G F  V+   D RT   VA+KI   + A    +    EI VLS          +C 
Sbjct: 11  KIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLS----------QCD 60

Query: 101 IRLIDHFKHAGPNGQHLCMVLEFLGD-SLLRLIKYSRYKGLELNKVREICKYILTGLDYL 159
              +  +  +      L +++E+LG  S L L++      L+  ++  I + IL GLDYL
Sbjct: 61  SPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGP---LDETQIATILREILKGLDYL 117

Query: 160 HRELGIIHTDLKPENILL 177
           H E   IH D+K  N+LL
Sbjct: 118 HSEKK-IHRDIKAANVLL 134

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 9/143 (6%)

Query: 43  KLGWGQFSIVWLAYDTRTSS-YVALK---IQKSAAQFAQAALHEIEVLSAVADGDPSNEK 98
           ++G G +  V+ A D +    +VALK   +Q        + + E+ VL  +   +  N  
Sbjct: 8   EIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPN-- 65

Query: 99  CVIRLIDHFKHAGPNGQ-HLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLD 157
            V+RL D    +  + +  L +V E +   L   +      G+    ++++   +L GLD
Sbjct: 66  -VVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLD 124

Query: 158 YLHRELGIIHTDLKPENILLVST 180
           +LH    ++H DLKP+NIL+ S+
Sbjct: 125 FLHSHR-VVHRDLKPQNILVTSS 146

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 20/167 (11%)

Query: 12  DDEGIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKS 71
           D+E ++  R      V VGD     +Y    K+G G    V+ A D  T   VA+K Q +
Sbjct: 1   DEEILEKLRS----IVSVGD--PKKKYTRFEKIGQGASGTVYTAIDIATGQEVAIK-QMN 53

Query: 72  AAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLR 130
             Q  +  L   E+L    + +P+    ++  +D +      G  L +V+E+L G SL  
Sbjct: 54  LQQQPKKELIINEILVMRENKNPN----IVNYLDSYL----VGDELWVVMEYLAGGSLTD 105

Query: 131 LIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
           ++  +    ++  ++  +C+  L  LD+LH    +IH D+K +NILL
Sbjct: 106 VVTET---CMDEGQIAAVCRECLQALDFLHSN-QVIHRDIKSDNILL 148

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 3/68 (4%)

Query: 113 NGQHLCMVLEFLG-DSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLK 171
           N  ++CM +EF+   SL R+  Y +   + +  + +I   ++ GL YL+    I+H D+K
Sbjct: 74  NENNICMCMEFMDCGSLDRI--YKKGGPIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIK 131

Query: 172 PENILLVS 179
           P NIL+ S
Sbjct: 132 PSNILVNS 139

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 243 KPERCLDGIDMRCKVVDFGNAC--RANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KPE  L      C++ D G A   +  K   +   T  Y APE++    YS+ VD ++  
Sbjct: 122 KPENVLLDDQGNCRLSDLGLAVELKDGKTITQRAGTNGYMAPEILKEEPYSYPVDWFAMG 181

Query: 301 CTAFELATGDMLF 313
           C+ +E+  G   F
Sbjct: 182 CSIYEMVAGRTPF 194

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 12/68 (17%)

Query: 116 HLCMVLEFL--GDSLLRLIKYSRY----KGLELNKVREICKYILTGLDYLHRELGIIHTD 169
           HLC+V+  +  GD     +KY  Y    +GLE+ +V      I  G+ +LH  + I++ D
Sbjct: 67  HLCLVMSLMNGGD-----LKYHIYNVGERGLEMERVIHYSAQITCGILHLH-SMDIVYRD 120

Query: 170 LKPENILL 177
           +KPEN+LL
Sbjct: 121 MKPENVLL 128

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 13/137 (9%)

Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVI 101
           +KLG GQF  VW+ Y    S+ VA+K  K      QA L E  ++  +      ++K ++
Sbjct: 12  KKLGAGQFGEVWMGY-YNNSTKVAVKTLKPGTMSVQAFLEEANLMKTL-----QHDK-LV 64

Query: 102 RLIDHFKHAGPNGQHLCMVLEFLGD-SLLRLIKYSRYKGLELNKVREICKYILTGLDYLH 160
           RL        P    + ++ E++   SLL  +K      + L K+ +    I  G+ Y+ 
Sbjct: 65  RLYAVVTKEEP----IYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIE 120

Query: 161 RELGIIHTDLKPENILL 177
           R+   IH DL+  N+L+
Sbjct: 121 RK-NYIHRDLRAANVLV 136

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 16/139 (11%)

Query: 41  QRKLGWGQFSIVWLA-YDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKC 99
           ++KLG GQF  VW+A Y+  T   VA+K  K  +   +A L E  V+  +      ++K 
Sbjct: 11  EKKLGAGQFGEVWMATYNKHTK--VAVKTMKPGSMSVEAFLAEANVMKTL-----QHDK- 62

Query: 100 VIRLIDHFKHAGPNGQHLCMVLEFLGD-SLLRLIKYSRYKGLELNKVREICKYILTGLDY 158
           +++L     HA    + + ++ EF+   SLL  +K        L K+ +    I  G+ +
Sbjct: 63  LVKL-----HAVVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAF 117

Query: 159 LHRELGIIHTDLKPENILL 177
           + +    IH DL+  NIL+
Sbjct: 118 IEQR-NYIHRDLRAANILV 135

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 26/144 (18%)

Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFA--QAALHEIEVLSAVADGDPSNEKC 99
            ++G G    V+      T    ALK+     +    +    EIE+L  V      N   
Sbjct: 80  NRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDV------NHPN 133

Query: 100 VIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVRE---ICKYILTG 155
           V++  D F H G     + ++LEF+ G SL         +G  +   +    + + IL+G
Sbjct: 134 VVKCHDMFDHNG----EIQVLLEFMDGGSL---------EGTHIADEQFLADVARQILSG 180

Query: 156 LDYLHRELGIIHTDLKPENILLVS 179
           + YLHR   I+H D+KP N+L+ S
Sbjct: 181 IAYLHRR-HIVHRDIKPSNLLINS 203

Length = 353

>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 10/70 (14%)

Query: 115 QHLCMVLEFL--GD--SLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDL 170
           +HLCMV+E++  GD  +LL+ I       L ++  R      +  L+YLH   GI+H DL
Sbjct: 74  RHLCMVMEYVEGGDCATLLKNIG-----ALPVDMARMYFAETVLALEYLH-NYGIVHRDL 127

Query: 171 KPENILLVST 180
           KP+N+L+ S 
Sbjct: 128 KPDNLLITSM 137

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3. Length = 305

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 29/151 (19%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQA---------ALHEIEVLS 87
           +Y    K+G G + +V+   +  T   VA+K      +F ++         AL EI +L 
Sbjct: 2   KYEKLSKIGEGSYGVVFKCRNRETGQIVAIK------KFVESEDDPVIKKIALREIRMLK 55

Query: 88  AVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLL-RLIKYSRYKGLELNKVR 146
            +   +      ++ LI+ F+      + L +V E+   ++L  L K  R  G+  + ++
Sbjct: 56  QLKHPN------LVNLIEVFRRK----RKLHLVFEYCDHTVLNELEKNPR--GVPEHLIK 103

Query: 147 EICKYILTGLDYLHRELGIIHTDLKPENILL 177
           +I    L  +++ H+    IH D+KPENIL+
Sbjct: 104 KIIWQTLQAVNFCHKH-NCIHRDVKPENILI 133

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 45.0 bits (106), Expect = 4e-05
 Identities = 46/180 (25%), Positives = 69/180 (38%), Gaps = 53/180 (29%)

Query: 251 IDMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVIL-----RAGYSFSVDMWSFACT 302
           +D   K+ DFG + +  K        I T  + APEV++        Y +  D+WS   T
Sbjct: 145 LDGDIKLADFGVSAKNVKTLQRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGIT 204

Query: 303 AFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRI 362
             E+A               E   H     EL    P ++ +  A+S        +   +
Sbjct: 205 LIEMAQ-------------IEPPHH-----EL---NPMRVLLKIAKS--------EPPTL 235

Query: 363 RRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR 422
            +   WS+                EF +FL   LD  PE RP+A Q L+HP++S   S R
Sbjct: 236 SQPSKWSM----------------EFRDFLKTALDKHPETRPSAAQLLEHPFVSSVTSNR 279

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score = 45.1 bits (106), Expect = 4e-05
 Identities = 50/177 (28%), Positives = 75/177 (42%), Gaps = 32/177 (18%)

Query: 252 DMRCKVVDFGNACRANKQFAEEIQT----RQYRAPEVILRAGYSFSVDMWSFACTAFELA 307
           D   K+ DFG  C+     A  ++T     +Y APEV+    Y  +VD W      +E+ 
Sbjct: 131 DGHIKITDFG-LCKEGITDAATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMM 189

Query: 308 TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA------IGGAQSKDYFDRHG---- 357
            G + F  +  +   E    L LM ++  K PR ++      + G   KD   R G    
Sbjct: 190 CGRLPFYNQDHEKLFE----LILMEDI--KFPRTLSADAKSLLSGLLIKDPNKRLGGGPD 243

Query: 358 DLKRIRRLKFWS-------LDRLLVDKYR---FSETDAREF-AEFLVPLLDFTPEKR 403
           D K I R  F++        D+ LV  ++    SETD R F  EF    +  TP ++
Sbjct: 244 DAKEIMRHSFFTGVNWQDVYDKKLVPPFKPQVTSETDTRYFDEEFTAQTITITPPEK 300

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       K+ DFG +          + +  Y APEV+   GY F+VD WS  C 
Sbjct: 128 KPENFLIDASGHIKLTDFGLSKGIVTYANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCM 187

Query: 303 AFELATGDMLFAPKSG 318
            +E   G   F P SG
Sbjct: 188 LYEFLCG---FPPFSG 200

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 20/141 (14%)

Query: 43  KLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADGDPSNEKC 99
           K+G G + +V+ A D  T   VALK   ++         A+ EI +L  +   +      
Sbjct: 6   KIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPN------ 59

Query: 100 VIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKY---ILTGL 156
           ++RL+D   H+      L +V EFL    L L KY     L       I  Y   +L G+
Sbjct: 60  IVRLLD-VVHSE---NKLYLVFEFLD---LDLKKYMDSSPLTGLDPPLIKSYLYQLLQGI 112

Query: 157 DYLHRELGIIHTDLKPENILL 177
            Y H    ++H DLKP+N+L+
Sbjct: 113 AYCHSHR-VLHRDLKPQNLLI 132

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

 Score = 44.6 bits (105), Expect = 5e-05
 Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 11/164 (6%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRL 103
           +G G +  V+     +T    A+K+        +    EI +L        S+ + +   
Sbjct: 24  VGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKY-----SHHRNIATY 78

Query: 104 IDHFKHAGPNGQ--HLCMVLEFLG-DSLLRLIKYSRYKGLELNKVREICKYILTGLDYLH 160
              F    P G    L +V+EF G  S+  L+K ++   L+ + +  IC+ IL GL +LH
Sbjct: 79  YGAFIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLH 138

Query: 161 RELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSIN 204
               +IH D+K +N+LL  T +     +  G++  L+R  G  N
Sbjct: 139 AH-KVIHRDIKGQNVLL--TENAEVKLVDFGVSAQLDRTVGRRN 179

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 17/123 (13%)

Query: 248 LDGIDMRCKVVDFGNACRAN----KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTA 303
           LD  D   K+ DFG  C+ N     + +    T  Y APE++    Y+FSVD WSF    
Sbjct: 129 LDR-DGHIKIADFG-MCKENVFGDNRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLL 186

Query: 304 FELATGDMLFAPKSGQGFCEDEDHLALMMEL-IGKMPRKIAIGGAQSKDYFDRHGDLKRI 362
           +E+  G    +P  G    +DED L   + +     PR I     +SKD  ++  +    
Sbjct: 187 YEMLIGQ---SPFHG----DDEDELFESIRVDTPHYPRWITK---ESKDILEKLFERDPT 236

Query: 363 RRL 365
           RRL
Sbjct: 237 RRL 239

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|143373 cd07868, STKc_CDK8, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

 Score = 44.7 bits (105), Expect = 6e-05
 Identities = 94/391 (24%), Positives = 151/391 (38%), Gaps = 99/391 (25%)

Query: 43  KLGWGQFSIVWLAY--DTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCV 100
           K+G G +  V+ A   D +     ALK Q      + +A  EI +L  +   +      V
Sbjct: 8   KVGRGTYGHVYKAKRKDGKDDRDYALK-QIEGTGISMSACREIALLRELKHPN------V 60

Query: 101 IRLIDHF-KHAGPNGQHLCMVLEFLGDSLLRLIKYSRY-----KGLELNK--VREICKYI 152
           I L   F  HA    + + ++ ++    L  +IK+ R      K ++L +  V+ +   I
Sbjct: 61  ISLQKVFLSHAD---RKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQI 117

Query: 153 LTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMT 212
           L G+ YLH    ++H DLKP NIL++                  E PE            
Sbjct: 118 LDGIHYLHANW-VLHRDLKPANILVMG-----------------EGPE------------ 147

Query: 213 IVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAE 272
                   R +  +A++   R     +   KP   LD +     VV F            
Sbjct: 148 --------RGRVKIADMGFARLFNSPL---KPLADLDPV-----VVTF------------ 179

Query: 273 EIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALM 331
                 YRAPE++L A  Y+ ++D+W+  C   EL T + +F        C  ED     
Sbjct: 180 -----WYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIF-------HCRQEDIKTSN 227

Query: 332 MELIGKMPRKIAIGG-AQSKDYFD-----RHGDL-KRIRRLKFWSLDRLLVDKYRFSETD 384
                ++ R   + G    KD+ D      H  L K  RR  + +   +   +    + D
Sbjct: 228 PYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPD 287

Query: 385 AREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
           ++ F   L  LL   P KR T++Q +Q P+ 
Sbjct: 288 SKAF-HLLQKLLTMDPIKRITSEQAMQDPYF 317

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDK8 phosphorylates cyclin H, a subunit of the general transcription factor TFIIH, which results in the inhibition of TFIIH-dependent phosphorylation of the C-terminal domain (CTD) of RNAP II, facilitating the inhibition of transcription. It has also been shown to promote transcription by a mechanism that is likely to involve RNAP II phosphorylation. CDK8 also functions as a stimulus-specific positive coregulator of p53 transcriptional responses. Length = 317

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 44.4 bits (105), Expect = 7e-05
 Identities = 30/67 (44%), Positives = 37/67 (55%), Gaps = 14/67 (20%)

Query: 117 LCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILT----GLDYLHRELGIIHTDL 170
           L ++L+FL  GD   RL K       E+    E  K+ L      LD+LH  LGII+ DL
Sbjct: 73  LYLILDFLRGGDLFTRLSK-------EVMFTEEDVKFYLAELALALDHLHS-LGIIYRDL 124

Query: 171 KPENILL 177
           KPENILL
Sbjct: 125 KPENILL 131

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 43/175 (24%), Positives = 72/175 (41%), Gaps = 21/175 (12%)

Query: 248 LDGIDMRCKVVDFGNA-CRANK-QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFE 305
           ++ +D  C + D G A        F     T +  APEV+ R  Y+   D+WS     FE
Sbjct: 190 INDVDQVC-IGDLGAAQFPVVAPAFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFE 248

Query: 306 -LATGDMLF--APKSGQGFCED-EDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK- 360
            LA    +F   P + + + +    HL  ++  +   P +           F R    + 
Sbjct: 249 MLAYPSTIFEDPPSTPEEYVKSCHSHLLKIISTLKVHPEE-----------FPRDPGSRL 297

Query: 361 RIRRLKFWSLDRLLVDKY-RFSETDAREFAEFLV-PLLDFTPEKRPTAQQCLQHP 413
               +++ SL+R    +Y  F   +     EFLV  +L F    RP+A++ L +P
Sbjct: 298 VRGFIEYASLERQPYTRYPCFQRVNLPIDGEFLVHKMLTFDAAMRPSAEEILNYP 352

Length = 357

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 43.9 bits (103), Expect = 8e-05
 Identities = 40/168 (23%), Positives = 63/168 (37%), Gaps = 48/168 (28%)

Query: 252 DMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 308
           D R K+ DFG   + +K+       + T  + APE+I R  Y   VD+WS      E+  
Sbjct: 152 DGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVD 211

Query: 309 GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFW 368
           G+  +          +E  L  M  +   +P K+               +L ++      
Sbjct: 212 GEPPYF---------NEPPLKAMKMIRDNLPPKLK--------------NLHKVSPSLKG 248

Query: 369 SLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
            LDRLLV                        P +R TA + L+HP+L+
Sbjct: 249 FLDRLLVRD----------------------PAQRATAAELLKHPFLA 274

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 43.9 bits (103), Expect = 9e-05
 Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 26/146 (17%)

Query: 43  KLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIR 102
           K+G G   IV +A +  +   VA+K+     Q  +  L               NE  ++R
Sbjct: 28  KIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLF--------------NEVVIMR 73

Query: 103 LIDHFK-----HAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGL 156
              H        +   G+ L +++EFL G +L  ++  +R   L   ++  +C+ +L  L
Sbjct: 74  DYQHQNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQTR---LNEEQIATVCESVLQAL 130

Query: 157 DYLHRELGIIHTDLKPENILLVSTID 182
            YLH + G+IH D+K ++ILL  T+D
Sbjct: 131 CYLHSQ-GVIHRDIKSDSILL--TLD 153

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 43.5 bits (102), Expect = 9e-05
 Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 26/144 (18%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRL 103
           LG G F  V+L YD  T   +A+K Q      +Q    E+  L           +C I+L
Sbjct: 10  LGRGAFGEVYLCYDADTGRELAVK-QVPFDPDSQETSKEVNAL-----------ECEIQL 57

Query: 104 IDHFKHA----------GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYI 152
           + + +H            P  + L + +E++ G S+   +K   Y  L  N  R   + I
Sbjct: 58  LKNLRHDRIVQYYGCLRDPEEKKLSIFVEYMPGGSIKDQLK--AYGALTENVTRRYTRQI 115

Query: 153 LTGLDYLHRELGIIHTDLKPENIL 176
           L G+ YLH  + I+H D+K  NIL
Sbjct: 116 LQGVSYLHSNM-IVHRDIKGANIL 138

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 43/164 (26%), Positives = 60/164 (36%), Gaps = 49/164 (29%)

Query: 256 KVVDFGNACRANKQFAEE---IQTRQYRAPEVI---LRAGYSFSVDMWSFACTAFELATG 309
           K+ DFG + +     A+    I T  + APEV     + GY    D+W+   TA ELA  
Sbjct: 141 KLADFGVSAQLTATIAKRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAEL 200

Query: 310 DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWS 369
                P         + H    + LI K                          +LK   
Sbjct: 201 Q---PPMF-------DLHPMRALFLISKSNFPPP--------------------KLK--- 227

Query: 370 LDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP 413
                 DK ++S      F +F+   L   P+KRPTA + LQHP
Sbjct: 228 ------DKEKWSP----VFHDFIKKCLTKDPKKRPTATKLLQHP 261

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 22/107 (20%)

Query: 77  QAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKY 134
           Q AL+E ++L  V+           R I    +A      LC+V+  +  GD     +KY
Sbjct: 38  QMALNEKKILEKVSS----------RFIVSLAYAFETKDDLCLVMTLMNGGD-----LKY 82

Query: 135 SRY----KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
             Y     G    +       I+ GL++LH+   I++ DLKPEN+LL
Sbjct: 83  HIYNVGEPGFPEARAIFYAAQIICGLEHLHQR-RIVYRDLKPENVLL 128

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 119 MVLEFL-GDSLLRLIKYSRYKGLELNK--VREICKYILTGLDYLHRELGIIHTDLKPENI 175
           + +E+  G SL  + K  + +G  + +  + +I + +L GL YLH    IIH D+KP NI
Sbjct: 78  IAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLH-SRKIIHRDIKPSNI 136

Query: 176 LL 177
           LL
Sbjct: 137 LL 138

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 24/146 (16%)

Query: 43  KLGWGQFSIVWLAYDTRTSSYVALKI-QKSAAQFAQAALH---EIEVLSAVADGDPSNEK 98
           ++G G +  V+LA    T   VALK  +KS         H   E ++L+       +  +
Sbjct: 8   QVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTT------TKSE 61

Query: 99  CVIRLIDHFKHAGPNGQHLCMVLEFL--GD--SLLRLIKYSRYKGLELNKVREICKYILT 154
            +++L+  F+      ++L + +E++  GD  +LL     +    L  +  R     +  
Sbjct: 62  WLVKLLYAFQDD----EYLYLAMEYVPGGDFRTLL-----NNLGVLSEDHARFYMAEMFE 112

Query: 155 GLDYLHRELGIIHTDLKPENILLVST 180
            +D LH  LG IH DLKPEN L+ ++
Sbjct: 113 AVDALHE-LGYIHRDLKPENFLIDAS 137

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 20/167 (11%)

Query: 12  DDEGIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKS 71
           D+E ++  R      V VGD     +Y    K+G G    V+ A D  T   VA++ Q +
Sbjct: 2   DEEILEKLRS----IVSVGD--PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIR-QMN 54

Query: 72  AAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLR 130
             Q  +  L   E+L    + +P+    ++  +D +      G  L +V+E+L G SL  
Sbjct: 55  LQQQPKKELIINEILVMRENKNPN----IVNYLDSYL----VGDELWVVMEYLAGGSLTD 106

Query: 131 LIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
           ++  +    ++  ++  +C+  L  L++LH    +IH D+K +NILL
Sbjct: 107 VVTET---CMDEGQIAAVCRECLQALEFLHSN-QVIHRDIKSDNILL 149

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 16/139 (11%)

Query: 43  KLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVI 101
           K+G G   IV +A +  T   VA+K +     Q  +   +E+ ++      D  +E  V 
Sbjct: 29  KIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMR-----DYHHENVVD 83

Query: 102 RLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLH 160
               +       G  L +V+EFL G +L  ++ ++R   +   ++  +C  +L  L YLH
Sbjct: 84  MYNSYLV-----GDELWVVMEFLEGGALTDIVTHTR---MNEEQIATVCLSVLRALSYLH 135

Query: 161 RELGIIHTDLKPENILLVS 179
            + G+IH D+K ++ILL S
Sbjct: 136 NQ-GVIHRDIKSDSILLTS 153

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 41/169 (24%), Positives = 62/169 (36%), Gaps = 51/169 (30%)

Query: 248 LDGIDMRCKVVDFGNA--CRANKQFAEE-IQTRQYRAPEVILRAGYSFSVDMWSFACTAF 304
           LD  +   K+ DFG A     +  FA+  + T  Y +PE +    Y    D+WS  C  +
Sbjct: 143 LDA-NNNVKLGDFGLAKILGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIY 201

Query: 305 ELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRR 364
           EL      F  ++          L L          KI  G               + RR
Sbjct: 202 ELCALSPPFTARN---------QLQLA--------SKIKEG---------------KFRR 229

Query: 365 LKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP 413
           +            YR+S     E  E +  +L+  P+KRP+ ++ LQ P
Sbjct: 230 I-----------PYRYSS----ELNEVIKSMLNVDPDKRPSTEELLQLP 263

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 2/82 (2%)

Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSR-YKGLELNKVREICKYILTG 155
           EK   + + +  +A      LC+VL  +    L+   Y+    G E  +       IL G
Sbjct: 55  EKVNSQFVVNLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCG 114

Query: 156 LDYLHRELGIIHTDLKPENILL 177
           L+ LHRE   ++ DLKPENILL
Sbjct: 115 LEDLHRE-NTVYRDLKPENILL 135

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 16/152 (10%)

Query: 27  VRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVL 86
           V VGD     +Y    K+G G    V+ A D  T   VA+K Q +  Q  +  L   E+L
Sbjct: 12  VSVGD--PKKKYTRFEKIGQGASGTVYTAIDVATGQEVAIK-QMNLQQQPKKELIINEIL 68

Query: 87  SAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKV 145
               +  P+    ++  +D +      G  L +V+E+L G SL  ++  +    ++  ++
Sbjct: 69  VMRENKHPN----IVNYLDSYL----VGDELWVVMEYLAGGSLTDVVTETC---MDEGQI 117

Query: 146 REICKYILTGLDYLHRELGIIHTDLKPENILL 177
             +C+  L  L++LH    +IH D+K +NILL
Sbjct: 118 AAVCRECLQALEFLHSN-QVIHRDIKSDNILL 148

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|173714 cd05625, STKc_LATS1, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 70/285 (24%), Positives = 116/285 (40%), Gaps = 40/285 (14%)

Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGDPSN 96
           ++  + LG G F  V LA    T +  A+K ++K          H       +A+ D  N
Sbjct: 3   FVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEAD--N 60

Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILT 154
           E  V+RL   F+    +  +L  V++++  GD +  LI+   +     +  R     +  
Sbjct: 61  E-WVVRLYYSFQ----DKDNLYFVMDYIPGGDMMSLLIRMGIFPE---DLARFYIAELTC 112

Query: 155 GLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIV 214
            ++ +H+ +G IH D+KP+NIL    ID      R G   +            T      
Sbjct: 113 AVESVHK-MGFIHRDIKPDNIL----ID------RDGHIKL------------TDFGLCT 149

Query: 215 EKKLKRRAKRAVANISIRRASMG-GIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEE 273
             +    +K   +   +R+ SM    E   P  C  G   R K ++   A +  +  A  
Sbjct: 150 GFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANCRCG--DRLKPLERRAARQHQRCLAHS 207

Query: 274 -IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKS 317
            + T  Y APEV+LR GY+   D WS     +E+  G   F  ++
Sbjct: 208 LVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLAQT 252

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype and poor prognosis. LATS1 induces G2 arrest and promotes cytokinesis. It may be a component of the mitotic exit network in higher eukaryotes. Length = 382

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 18/141 (12%)

Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKIQ----KSAAQFAQAALHEIEVLSAVADGDPSNE 97
           R++G G F  V+ A D RT+  VA+K      K + +  Q  + E++ L  +   +    
Sbjct: 31  REIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEY 90

Query: 98  K-CVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGL 156
           K C +R     +H         +V+E+   S   L++  + K L+  ++  I    L GL
Sbjct: 91  KGCYLR-----EHTA------WLVMEYCLGSASDLLEVHK-KPLQEVEIAAITHGALQGL 138

Query: 157 DYLHRELGIIHTDLKPENILL 177
            YLH    +IH D+K  NILL
Sbjct: 139 AYLHSH-NMIHRDIKAGNILL 158

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 52/231 (22%), Positives = 78/231 (33%), Gaps = 53/231 (22%)

Query: 202 SINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELP-KPERCLDGIDMRCKVVDF 260
            +  G  +T  I E  L+R     V  +   +     I    KP   L   + + K+ DF
Sbjct: 88  KLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHRDVKPTNVLVNGNGQVKLCDF 147

Query: 261 GNACRANKQFAE-EIQTRQYRAPEVIL------RAGYSFSVDMWSFACTAFELATGDMLF 313
           G +       A+  I  + Y APE I          Y+   D+WS   +  E+A G   +
Sbjct: 148 GVSGNLVASLAKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPY 207

Query: 314 APKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRL 373
            P       E   ++   +  I                     GD               
Sbjct: 208 PP-------ETYANIFAQLSAI-------------------VDGDPPT------------ 229

Query: 374 LVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL-SLRNSTRD 423
           L   Y     DA++F       L+  P +RPT  Q L+HPWL   +N+  D
Sbjct: 230 LPSGY---SDDAQDFVA---KCLNKIPNRRPTYAQLLEHPWLVKYKNADVD 274

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 29/157 (18%)

Query: 37  RYIAQRK-LGWGQFSIVWLAYDTRTSSYVALK------IQKSAAQFAQ---------AAL 80
           RYI +   LG G +  V  AYDT T   VA+K      I     +  Q           L
Sbjct: 9   RYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTL 68

Query: 81  HEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGL 140
            E+++++ +        + ++ L+D +      G  + +V++ +  S L+ +   + + L
Sbjct: 69  RELKIMNEI------KHENIMGLVDVYV----EGDFINLVMDIM-ASDLKKVVDRKIR-L 116

Query: 141 ELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
             ++V+ I   IL GL+ LH+    +H DL P NI +
Sbjct: 117 TESQVKCILLQILNGLNVLHKWY-FMHRDLSPANIFI 152

Length = 335

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 13/94 (13%)

Query: 248 LDGIDMRCKVVDFGNACRANKQF--AEEIQ-----TRQYRAPEVILRAGYSFSVDMWSFA 300
           +D    R ++ DFG A R   +   A E Q     T  + APEV+    Y  S D+WS  
Sbjct: 136 IDSTGQRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVG 195

Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMEL 334
           C   E+AT       K      +  +HLAL+ ++
Sbjct: 196 CVIIEMATA------KPPWNAEKHSNHLALIFKI 223

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 43/169 (25%), Positives = 66/169 (39%), Gaps = 48/169 (28%)

Query: 252 DMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 308
           D R K+ DFG   + +K+  +    + T  + APEVI R  Y   VD+WS      E+  
Sbjct: 154 DGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMID 213

Query: 309 GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFW 368
           G+  +          +E  L  M  +   +P ++               D  ++  +   
Sbjct: 214 GEPPYF---------NEPPLQAMRRIRDNLPPRVK--------------DSHKVSSVLRG 250

Query: 369 SLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 417
            LD +LV          RE            P +R TAQ+ LQHP+L L
Sbjct: 251 FLDLMLV----------RE------------PSQRATAQELLQHPFLKL 277

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 39/156 (25%), Positives = 55/156 (35%), Gaps = 53/156 (33%)

Query: 252 DMRCKVVDFGNACRAN----KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELA 307
           D   K+ DFG  C+ N     + +    T  Y APE++    Y+ SVD WSF    +E+ 
Sbjct: 132 DGHIKIADFG-MCKENMNGEGKASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEML 190

Query: 308 TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKF 367
            G    +P  G    EDED L                                      F
Sbjct: 191 IGQ---SPFHG----EDEDEL--------------------------------------F 205

Query: 368 WSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKR 403
            S   +L D+  F    ++E  + L  L +  P KR
Sbjct: 206 DS---ILNDRPHFPRWISKEAKDCLSKLFERDPTKR 238

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 18/150 (12%)

Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALK----IQKSAAQFAQAALHEIEVLSAVADGD 93
           +  ++K+G GQFS V+ A        VALK     +   A+  Q  + EI++L  +    
Sbjct: 4   FQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQL---- 59

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYIL 153
             N   VI+ +D F     N  ++ + L   GD L ++IKY + K   L   R + KY +
Sbjct: 60  --NHPNVIKYLDSF--IEDNELNIVLELADAGD-LSQMIKYFK-KQKRLIPERTVWKYFV 113

Query: 154 ---TGLDYLHRELGIIHTDLKPENILLVST 180
              + ++++H    ++H D+KP N+ + +T
Sbjct: 114 QLCSAVEHMHSRR-VMHRDIKPANVFITAT 142

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|173333 PTZ00036, PTZ00036, glycogen synthase kinase; Provisional

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 9/84 (10%)

Query: 256 KVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDML 312
           K+ DFG+A    A ++    I +R YRAPE++L A  Y+  +D+WS  C   E+  G  +
Sbjct: 211 KLCDFGSAKNLLAGQRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPI 270

Query: 313 FAPKSGQGFCEDEDHLALMMELIG 336
           F   SGQ      D L  +++++G
Sbjct: 271 F---SGQ---SSVDQLVRIIQVLG 288

Length = 440

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 15/138 (10%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQ----AALHEIEVLSAVADGDPSNEKC 99
           LG G F  V L  +  T  Y A+KI K     A+      L E  VL         N + 
Sbjct: 3   LGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQ--------NSRH 54

Query: 100 VIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYL 159
               +   K++      LC V+E+     L     SR +    ++ R     I++ LDYL
Sbjct: 55  --PFLTALKYSFQTHDRLCFVMEYANGGEL-FFHLSRERVFSEDRARFYGAEIVSALDYL 111

Query: 160 HRELGIIHTDLKPENILL 177
           H E  +++ DLK EN++L
Sbjct: 112 HSEKNVVYRDLKLENLML 129

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 26/142 (18%)

Query: 47  GQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRL--- 103
           G F  V+L      S   A+K+ K A    +  +H+++            E+  + L   
Sbjct: 15  GAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQA-----------ERDALALSKS 63

Query: 104 --IDHFKHAGPNGQHLCMVLEFL--GD--SLLRLIKYSRYKGLELNKVREICKYILTGLD 157
             I H  ++  +  ++ +V+E+L  GD  SLL +  Y      E   V+ I +  L  LD
Sbjct: 64  PFIVHLYYSLQSANNVYLVMEYLIGGDVKSLLHIYGYFD----EEMAVKYISEVAL-ALD 118

Query: 158 YLHRELGIIHTDLKPENILLVS 179
           YLHR  GIIH DLKP+N+L+ +
Sbjct: 119 YLHRH-GIIHRDLKPDNMLISN 139

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 16/138 (11%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQA----ALHEIEVLSAVADGDPSNEKC 99
           LG G F  V L  +  T  Y A+KI K     A+      L E  VL          +  
Sbjct: 3   LGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVL----------QNT 52

Query: 100 VIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYL 159
               +   K++      LC V+E+     L     SR +    ++ R     I++ L YL
Sbjct: 53  RHPFLTALKYSFQTHDRLCFVMEYANGGEL-FFHLSRERVFSEDRARFYGAEIVSALGYL 111

Query: 160 HRELGIIHTDLKPENILL 177
           H    +++ DLK EN++L
Sbjct: 112 HSC-DVVYRDLKLENLML 128

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 243 KPERCLDGIDMRCKVVDFGNACR---ANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSF 299
           K +  L G+D   K+ DFG   +      + +  + T  + APEV+ R  Y   VD+WS 
Sbjct: 143 KSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSL 202

Query: 300 ACTAFELATGD 310
              A E+  G+
Sbjct: 203 GIMAIEMIEGE 213

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 32/174 (18%)

Query: 252 DMRCKVVDFGNACRANKQFAEEIQT----RQYRAPEVILRAGYSFSVDMWSFACTAFELA 307
           D   K+ DFG  C+   +    ++T     +Y APEV+    Y  +VD W      +E+ 
Sbjct: 132 DGHIKITDFG-LCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMM 190

Query: 308 TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA------IGGAQSKDYFDRHG---- 357
            G + F  +  +   E    L LM E+  + PR ++      + G   KD   R G    
Sbjct: 191 CGRLPFYNQDHEKLFE----LILMEEI--RFPRTLSPEAKSLLSGLLKKDPKQRLGGGPD 244

Query: 358 DLKRIRRLKFWS-------LDRLLVDKYR---FSETDAREF-AEFLVPLLDFTP 400
           D K I + KF++        ++ LV  ++    SETD R F  EF   ++  TP
Sbjct: 245 DAKEIMQHKFFAGIVWQDVYEKKLVPPFKPQVTSETDTRYFDEEFTAQMITITP 298

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 47/177 (26%), Positives = 72/177 (40%), Gaps = 32/177 (18%)

Query: 252 DMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWSFACTAFELA 307
           D   K+ DFG  C+        ++    T +Y APEV+    Y  +VD W      +E+ 
Sbjct: 131 DGHIKITDFG-LCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMM 189

Query: 308 TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA------IGGAQSKDYFDRHG---- 357
            G + F  +  +   E    L LM E+  + PR ++      + G   KD   R G    
Sbjct: 190 CGRLPFYNQDHEKLFE----LILMEEI--RFPRTLSPEAKSLLAGLLKKDPKQRLGGGPE 243

Query: 358 DLKRIRRLKFWS-------LDRLLVDKYR---FSETDAREF-AEFLVPLLDFTPEKR 403
           D K I   +F++       + + L   ++    SETD R F  EF    +  TP  R
Sbjct: 244 DAKEIMEHRFFASINWQDVVQKKLEPPFKPQVTSETDTRYFDEEFTAQSITITPPDR 300

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 37/152 (24%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCV--- 100
           +G G +  V+LA +  T   +A+K              ++E+ + +A    S +K +   
Sbjct: 9   IGKGTYGRVYLALNVTTGEMMAVK--------------QVELPATIAGRHDSRQKDMVKA 54

Query: 101 ----IRLIDHFKHAGPN----------GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKV 145
               I  +    H   N           ++L + LE++ G S+   ++   Y   E   V
Sbjct: 55  LRSEIETLKDLDH--LNIVQYLGFETTEEYLSIFLEYVPGGSIGSCLR--TYGRFEEQLV 110

Query: 146 REICKYILTGLDYLHRELGIIHTDLKPENILL 177
           R   + +L GL YLH + GI+H DLK +N+L+
Sbjct: 111 RFFTEQVLEGLAYLHSK-GILHRDLKADNLLV 141

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 26/148 (17%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRL 103
           LG G F  V+L YD  T   +A+K      QF   +    + ++A+        +C I+L
Sbjct: 10  LGQGAFGRVYLCYDADTGRELAVK----QVQFDPESPETSKEVNAL--------ECEIQL 57

Query: 104 IDHFKHA----------GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYI 152
           + +  H            P  + L + +E + G S+   +K   Y  L  N  R+  + I
Sbjct: 58  LKNLLHERIVQYYGCLRDPMERTLSIFMEHMPGGSIKDQLK--SYGALTENVTRKYTRQI 115

Query: 153 LTGLDYLHRELGIIHTDLKPENILLVST 180
           L G+ YLH  + I+H D+K  NIL  S 
Sbjct: 116 LEGVSYLHSNM-IVHRDIKGANILRDSV 142

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 41.7 bits (99), Expect = 4e-04
 Identities = 31/138 (22%), Positives = 46/138 (33%), Gaps = 47/138 (34%)

Query: 276 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI 335
           T  Y +PE+     Y++  D+WS  C  +EL T    F  ++             ++EL 
Sbjct: 166 TPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGEN-------------LLELA 212

Query: 336 GKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPL 395
                KI              G    I                ++S     E    +  L
Sbjct: 213 ----LKI------------LKGQYPPIPS--------------QYS----SELRNLVSSL 238

Query: 396 LDFTPEKRPTAQQCLQHP 413
           L   PE+RP+  Q LQ P
Sbjct: 239 LQKDPEERPSIAQILQSP 256

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 42/163 (25%), Positives = 62/163 (38%), Gaps = 50/163 (30%)

Query: 256 KVVDFGNACR-ANKQFAEE--IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDML 312
           K+ DFG A +  + Q      + T  + APEVI ++ Y    D+WS   TA ELA G+  
Sbjct: 141 KLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGE-- 198

Query: 313 FAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDR 372
             P S       + H   ++ LI K       G                           
Sbjct: 199 -PPNS-------DMHPMRVLFLIPKNNPPTLTG--------------------------- 223

Query: 373 LLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
                  FS    + F EF+   L+  P  RPTA++ L+H ++
Sbjct: 224 ------EFS----KPFKEFIDACLNKDPSFRPTAKELLKHKFI 256

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|178763 PLN03224, PLN03224, probable serine/threonine protein kinase; Provisional

 Score = 42.0 bits (98), Expect = 5e-04
 Identities = 19/42 (45%), Positives = 32/42 (76%), Gaps = 3/42 (7%)

Query: 141 ELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTID 182
           ++N ++ + + +LTGL  LHR +GI+H D+KPEN+L+  T+D
Sbjct: 307 DINVIKGVMRQVLTGLRKLHR-IGIVHRDIKPENLLV--TVD 345

Length = 507

>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 43/179 (24%), Positives = 71/179 (39%), Gaps = 23/179 (12%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMW 297
           KP+  L       K+ DFG A RA    ++ ++ E+ T  YR P+V+L A  YS ++D+W
Sbjct: 130 KPQNLLISYLGELKLADFGLA-RAKSIPSQTYSSEVVTLWYRPPDVLLGATDYSSALDIW 188

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
              C   E+  G   F      G  +  + L  +  ++G        G ++  +Y     
Sbjct: 189 GAGCIFIEMLQGQPAFP-----GVSDVFEQLEKIWTVLGVPTEDTWPGVSKLPNYKP--- 240

Query: 358 DLKRIRRLKFWSLDRLLVDKY-RFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
                         + L   + R S     E  +    +L   P+ R +AQ  L HP+ 
Sbjct: 241 ------EWFLPCKPQQLRVVWKRLSRPPKAE--DLASQMLMMFPKDRISAQDALLHPYF 291

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recessive form of juvenile ALS. The function of PFTAIRE-2 is not yet known. Length = 291

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 41.6 bits (97), Expect = 6e-04
 Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 15/144 (10%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ---FAQAALHEIEVLSAVADGD 93
           RY     +G G +  V  A+DT+T   VA+K      Q    A+    E+ +L  +    
Sbjct: 18  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHM---- 73

Query: 94  PSNEKCVIRLIDHFKHAGPNGQ--HLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKY 151
               + VI L+D F  A    +   + +V   +G  L  ++K  +   L  + V+ +   
Sbjct: 74  --KHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK---LTDDHVQFLIYQ 128

Query: 152 ILTGLDYLHRELGIIHTDLKPENI 175
           IL GL Y+H    IIH DLKP N+
Sbjct: 129 ILRGLKYIH-SADIIHRDLKPSNL 151

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|143372 cd07867, STKc_CDC2L6, Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

 Score = 41.6 bits (97), Expect = 6e-04
 Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 24/177 (13%)

Query: 254 RCKVVDFGNACRAN---KQFAE---EIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFEL 306
           R K+ D G A   N   K  A+    + T  YRAPE++L A  Y+ ++D+W+  C   EL
Sbjct: 150 RVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAEL 209

Query: 307 ATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG-AQSKDYFD-----RHGDLK 360
            T + +F        C  ED          ++ R  ++ G    KD+ D      +  L+
Sbjct: 210 LTSEPIF-------HCRQEDIKTSNPFHHDQLDRIFSVMGFPADKDWEDIRKMPEYPTLQ 262

Query: 361 RIRRLKFWSLDRLL--VDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
           +  R   ++   L+  ++K++  + D++ F   L  LL   P KR T++Q LQ P+ 
Sbjct: 263 KDFRRTTYANSSLIKYMEKHKV-KPDSKVFL-LLQKLLTMDPTKRITSEQALQDPYF 317

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as the caspase-processed CDK11(p46). CDK11(p110), CDK11(p58), and CDK11(p46)do not belong to this subfamily. CDC2L6 is an associated protein of Mediator, a multiprotein complex that provides a platform to connect transcriptional and chromatin regulators and cofactors, in order to activate and mediate RNA polymerase II transcription. CDC2L6 is localized mainly in the nucleus amd exerts an opposing effect to CDK8 in VP16-dependent transcriptional activation by being a negative regulator. Length = 317

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 41.1 bits (96), Expect = 7e-04
 Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 26/148 (17%)

Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNE 97
           YI   KLG G ++ V+      T + VALK                E+     +G P   
Sbjct: 8   YIKLDKLGEGTYATVYKGRSKLTDNLVALK----------------EIRLEHEEGAPCTA 51

Query: 98  KCVIRLIDHFKHAGPNGQH--------LCMVLEFLGDSLLRLIKYSRYKGLELNKVREIC 149
              + L+   KHA     H        L +V E+L   L + +       + ++ V+   
Sbjct: 52  IREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCG-NSINMHNVKLFL 110

Query: 150 KYILTGLDYLHRELGIIHTDLKPENILL 177
             +L GL+Y HR   ++H DLKP+N+L+
Sbjct: 111 FQLLRGLNYCHRR-KVLHRDLKPQNLLI 137

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 41.2 bits (96), Expect = 7e-04
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSF 299
           K +  L G+D   K+ DFG   +   + ++    + T  + APEV+ R  Y   VD+WS 
Sbjct: 142 KSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSL 201

Query: 300 ACTAFELATGD 310
              A E+  G+
Sbjct: 202 GIMAIEMVEGE 212

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 43/174 (24%), Positives = 65/174 (37%), Gaps = 52/174 (29%)

Query: 248 LDGIDMRCKVVDFGNACRANKQFAEEIQTRQ-----YRAPEVI--LRAGYSFSVDMWSFA 300
            DGI   CK+ DFG + +++  +  +          + APEVI     GYS  VD+WS  
Sbjct: 143 ADGI---CKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLG 199

Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
           C   E+  G     P S      DE+ +A M +L                      G+ +
Sbjct: 200 CVVLEMFAGRR---PWS------DEEAIAAMFKL----------------------GNKR 228

Query: 361 RIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
               +       L           +    +FL       P+ RPTA++ LQHP+
Sbjct: 229 SAPPIPPDVSMNL-----------SPVALDFLNACFTINPDNRPTARELLQHPF 271

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 28/71 (39%), Positives = 31/71 (43%), Gaps = 9/71 (12%)

Query: 243 KPERCLDGIDMR--CKVVDFG--NACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 298
           KPE  L  ID     K+ DFG       NK+F   + T  Y APE IL  G     D WS
Sbjct: 124 KPENLL--IDQTGHLKLTDFGLSRNGLENKKF---VGTPDYLAPETILGVGDDKMSDWWS 178

Query: 299 FACTAFELATG 309
             C  FE   G
Sbjct: 179 LGCVIFEFLFG 189

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 40.9 bits (96), Expect = 9e-04
 Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 25/147 (17%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADGDPSNEKCV 100
           +G G +  V+ A D  T   VALK   +      F   A+ EI++L  +      N + +
Sbjct: 15  IGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQL------NHRNI 68

Query: 101 IRL----------IDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICK 150
           + L          +D  K  G       +V E++   L+ L++ S       + ++   K
Sbjct: 69  VNLKEIVTDKQDALDFKKDKG----AFYLVFEYMDHDLMGLLE-SGLVHFSEDHIKSFMK 123

Query: 151 YILTGLDYLHRELGIIHTDLKPENILL 177
            +L GL+Y H++   +H D+K  NILL
Sbjct: 124 QLLEGLNYCHKK-NFLHRDIKCSNILL 149

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 40.9 bits (96), Expect = 9e-04
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 117 LCMVLEFLGDSLLRLIK--YSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPEN 174
           +CM  E +  SL +  K  Y +   +  + + +I   I+  L+YLH +L +IH D+KP N
Sbjct: 77  ICM--EVMDTSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSN 134

Query: 175 ILL 177
           +L+
Sbjct: 135 VLI 137

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 40/181 (22%), Positives = 63/181 (34%), Gaps = 59/181 (32%)

Query: 256 KVVDFGNACRANKQFAEE---IQTRQYRAPEVIL-----RAGYSFSVDMWSFACTAFELA 307
           K+ DFG + +      +    I T  + APEV+         Y +  D+WS   T  ELA
Sbjct: 143 KLADFGVSAKNKSTLQKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELA 202

Query: 308 TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKF 367
                          E   H    M ++ K+ +                 +   + +   
Sbjct: 203 QM-------------EPPHHELNPMRVLLKILK----------------SEPPTLDQPSK 233

Query: 368 WSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKN 427
           WS                  F +FL   L   P+ RPTA + L+HP++S      D++ N
Sbjct: 234 WS----------------SSFNDFLKSCLVKDPDDRPTAAELLKHPFVS------DQSDN 271

Query: 428 K 428
           K
Sbjct: 272 K 272

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 42/150 (28%), Positives = 62/150 (41%), Gaps = 30/150 (20%)

Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNE 97
           YI   KLG G ++ V+      T + VALK                E+     +G P   
Sbjct: 8   YIKLEKLGEGTYATVFKGRSKLTENLVALK----------------EIRLEHEEGAPCTA 51

Query: 98  KCVIRLIDHFKHAGPNGQH--------LCMVLEFLGDSLLRLIKYSRYKG--LELNKVRE 147
              + L+   KHA     H        L +V E+L   L    +Y    G  + ++ V+ 
Sbjct: 52  IREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEYLDKDLK---QYMDDCGNIMSMHNVKI 108

Query: 148 ICKYILTGLDYLHRELGIIHTDLKPENILL 177
               IL GL Y HR   ++H DLKP+N+L+
Sbjct: 109 FLYQILRGLAYCHRR-KVLHRDLKPQNLLI 137

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 30/150 (20%)

Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNE 97
           Y+   KLG G ++ V+      T + VALK                E+     +G P   
Sbjct: 7   YVKLDKLGEGTYATVFKGRSKLTENLVALK----------------EIRLEHEEGAPCTA 50

Query: 98  KCVIRLIDHFKHAGPNGQH--------LCMVLEFLGDSLLRLIKYSRYKG--LELNKVRE 147
              + L+ + KHA     H        L +V E+L DS L+  +Y    G  + ++ V+ 
Sbjct: 51  IREVSLLKNLKHANIVTLHDIIHTERCLTLVFEYL-DSDLK--QYLDNCGNLMSMHNVKI 107

Query: 148 ICKYILTGLDYLHRELGIIHTDLKPENILL 177
               +L GL Y H+   I+H DLKP+N+L+
Sbjct: 108 FMFQLLRGLSYCHKR-KILHRDLKPQNLLI 136

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 14/144 (9%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADGD 93
           +Y    K+G G + +V+ A D  T+  +ALK   +++        A+ EI +L  +  G+
Sbjct: 3   QYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGN 62

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYIL 153
                 ++RL D       + + L +V E+L   L + +  S         ++     IL
Sbjct: 63  ------IVRLQDVVH----SEKRLYLVFEYLDLDLKKHMDSSPDFAKNPRLIKTYLYQIL 112

Query: 154 TGLDYLHRELGIIHTDLKPENILL 177
            G+ Y H    ++H DLKP+N+L+
Sbjct: 113 RGIAYCHSHR-VLHRDLKPQNLLI 135

Length = 294

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 256 KVVDFGNACR-ANKQFAEE--IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGD 310
           K+ DFG A +  + Q      + T  + APEVI ++ Y F  D+WS   TA ELA G+
Sbjct: 141 KLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGE 198

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 34/142 (23%), Positives = 53/142 (37%), Gaps = 45/142 (31%)

Query: 276 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLAL--MME 333
           T  Y APE I    YS   D+WS   +  ELATG   + P       E++    +  +++
Sbjct: 162 TSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPP-------ENDPPDGIFELLQ 214

Query: 334 LIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLV 393
            I   P                                RL   K  FS     +F +F+ 
Sbjct: 215 YIVNEPPP------------------------------RLPSGK--FSP----DFQDFVN 238

Query: 394 PLLDFTPEKRPTAQQCLQHPWL 415
             L   P +RP+ ++ L+HP++
Sbjct: 239 LCLIKDPRERPSYKELLEHPFI 260

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 14/137 (10%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIR 102
           LG G + IV+ A D  T   +A+K I +  +++ Q    EI + S +             
Sbjct: 16  LGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYL---------KHRN 66

Query: 103 LIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNK--VREICKYILTGLDYLH 160
           ++ +      NG     + +  G SL  L++ S++  L+ N+  +    K IL GL YLH
Sbjct: 67  IVQYLGSDSENGFFKIFMEQVPGGSLSALLR-SKWGPLKDNEQTIIFYTKQILEGLKYLH 125

Query: 161 RELGIIHTDLKPENILL 177
            +  I+H D+K +N+L+
Sbjct: 126 -DNQIVHRDIKGDNVLV 141

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 16/75 (21%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR--------QYRAPEVILRAGYSFSV 294
           KPE  L   +   K+ DFG        FA++++ R        +Y APEVI   G++ +V
Sbjct: 128 KPENILLDKEGHIKLTDFG--------FAKKLRDRTWTLCGTPEYLAPEVIQSKGHNKAV 179

Query: 295 DMWSFACTAFELATG 309
           D W+     +E+  G
Sbjct: 180 DWWALGILIYEMLVG 194

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 7/131 (5%)

Query: 185 KDPIRSGLTPILE-RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPK 243
           +DP+   L+  +E  P GSI     S   + E   ++  ++ +  +S   ++M      K
Sbjct: 74  RDPMERTLSIFMEHMPGGSIKDQLKSYGALTENVTRKYTRQILEGVSYLHSNMIVHRDIK 133

Query: 244 PERCLDGIDMRCKVVDFGNA------CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 297
               L       K+ DFG +      C +         T  + +PEVI   GY    D+W
Sbjct: 134 GANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIW 193

Query: 298 SFACTAFELAT 308
           S  CT  E+ T
Sbjct: 194 SVGCTVVEMLT 204

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 15/26 (57%), Positives = 18/26 (69%)

Query: 152 ILTGLDYLHRELGIIHTDLKPENILL 177
            +  L+YL  EL IIH D+KP NILL
Sbjct: 116 TVKALNYLKEELKIIHRDVKPSNILL 141

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 15/138 (10%)

Query: 41  QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCV 100
           +RKLG GQF  VW+      ++ VA+K  K      +A L E +++  +      ++K +
Sbjct: 11  ERKLGAGQFGEVWMGT-WNGTTKVAVKTLKPGTMSPEAFLQEAQIMKKL-----RHDK-L 63

Query: 101 IRLIDHFKHA-GPNGQHLCMVLEFLGD-SLLRLIKYSRYKGLELNKVREICKYILTGLDY 158
           ++L     +A     + + +V E++   SLL  +K    K L L ++ ++   I  G+ Y
Sbjct: 64  VQL-----YAVCSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAY 118

Query: 159 LHRELGIIHTDLKPENIL 176
           L      IH DL   NIL
Sbjct: 119 LESR-NYIHRDLAARNIL 135

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|223009 PHA03211, PHA03211, serine/threonine kinase US3; Provisional

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 18/43 (41%), Positives = 30/43 (69%), Gaps = 1/43 (2%)

Query: 135 SRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
           +R + L L +V  + + +L+ +DY+H E GIIH D+K EN+L+
Sbjct: 252 ARLRPLGLAQVTAVARQLLSAIDYIHGE-GIIHRDIKTENVLV 293

Length = 461

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 17/87 (19%)

Query: 248 LDGIDMRCKVVDFGNACRANKQFAEEIQTR------QYRAPEVILRAGYSFSVDMWSFAC 301
           LD  +   K+ DFG  C+        + T        Y APE++    Y  +VD W+   
Sbjct: 129 LDS-EGHIKIADFG-MCKEG--ILGGVTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGV 184

Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHL 328
             +E+  G    +P  G    +DED L
Sbjct: 185 LLYEMLAGQ---SPFEG----DDEDEL 204

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 39/180 (21%), Positives = 63/180 (35%), Gaps = 23/180 (12%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEE-IQTRQYRAPEVILRAGYSFSVDMWSFAC 301
           KP   L       K+ DFG + +     A   + TR Y +PE +    Y+   D+WS   
Sbjct: 127 KPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYTVQSDIWSLGL 186

Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
           +  E+A G     P        D   L  M                +S      H     
Sbjct: 187 SLVEMAIGRYPIPP-------PDAKELEAMFG-----RPVSEGEAKESHRPVSGHPPDSP 234

Query: 362 IRRLKFWSLDRLL------VDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
                F  LD ++      +    FS+    EF +F+   L   P++R   ++  +HP++
Sbjct: 235 RPMAIFELLDYIVNEPPPKLPSGAFSD----EFQDFVDKCLKKNPKERADLKELTKHPFI 290

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 35/137 (25%), Positives = 69/137 (50%), Gaps = 14/137 (10%)

Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVI 101
           +KLG GQF  VW+      +  VA+K  K      ++ L E +++  +      ++K ++
Sbjct: 12  KKLGNGQFGEVWMGTWNGNTK-VAVKTLKPGTMSPESFLEEAQIMKKL-----RHDK-LV 64

Query: 102 RLIDHFKHAGPNGQHLCMVLEFLGD-SLLRLIKYSRYKGLELNKVREICKYILTGLDYLH 160
           +L     +A  + + + +V E++   SLL  +K    + L+L  + ++   +  G+ Y+ 
Sbjct: 65  QL-----YAVVSEEPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIE 119

Query: 161 RELGIIHTDLKPENILL 177
           R +  IH DL+  NIL+
Sbjct: 120 R-MNYIHRDLRSANILV 135

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 31/159 (19%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQF-----AQAALHEIEVLSAVAD 91
           +Y+  + +G G + IV  A ++ T+  VA+K  K A  F     A+  L EI++L  +  
Sbjct: 6   KYVPIKPIGRGAYGIVCSAKNSETNEKVAIK--KIANAFDNRIDAKRTLREIKLLRHL-- 61

Query: 92  GDPSNEKCVIRLIDHFKHAGPNGQH----LCMVLEFLGDSLLRLIKYSRYKGLELNKVRE 147
            D  N   VI + D      P  +     + +V E +   L ++I+ S  + L      +
Sbjct: 62  -DHEN---VIAIKDIMP---PPHREAFNDVYIVYELMDTDLHQIIRSS--QTLS----DD 108

Query: 148 ICKY----ILTGLDYLHRELGIIHTDLKPENILLVSTID 182
            C+Y    +L GL Y+H    ++H DLKP N+LL +  D
Sbjct: 109 HCQYFLYQLLRGLKYIH-SANVLHRDLKPSNLLLNANCD 146

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 32/151 (21%)

Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKI----QKSAAQFAQAALHEIEVLSAVADGD 93
           Y    KLG G ++ V+      T   VALK      +  A F   A+ E  +L  +   +
Sbjct: 7   YKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFT--AIREASLLKDLKHAN 64

Query: 94  PSNEKCVIRLID--HFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRY-----KGLELNKVR 146
                 ++ L D  H K        L +V E+L   L       +Y      GL ++ VR
Sbjct: 65  ------IVTLHDIIHTKKT------LTLVFEYLDTDL------KQYMDDCGGGLSMHNVR 106

Query: 147 EICKYILTGLDYLHRELGIIHTDLKPENILL 177
                +L GL Y H+   ++H DLKP+N+L+
Sbjct: 107 LFLFQLLRGLAYCHQR-RVLHRDLKPQNLLI 136

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 11/72 (15%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEE-------IQTRQYRAPEVILRAGYSFSVD 295
           KP           K+ D G      + F+ +       + T  Y +PE I   GY+F  D
Sbjct: 133 KPANVFITATGVVKLGDLG----LGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSD 188

Query: 296 MWSFACTAFELA 307
           +WS  C  +E+A
Sbjct: 189 IWSLGCLLYEMA 200

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 29/151 (19%)

Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNE 97
           Y    K+G G + +V+   + +T   VA+K              +I  L +  +G PS  
Sbjct: 2   YTKIEKIGEGTYGVVYKGRNKKTGQIVAMK--------------KIR-LESEEEGVPSTA 46

Query: 98  KCVIRLIDHFKHAGPN----------GQHLCMVLEFLGDSLLR-LIKYSRYKGLELNKVR 146
              I L+   +H  PN             L ++ EFL   L + L    + + ++   V+
Sbjct: 47  IREISLLKELQH--PNIVCLQDVLMQESRLYLIFEFLSMDLKKYLDSLPKGQYMDAELVK 104

Query: 147 EICKYILTGLDYLHRELGIIHTDLKPENILL 177
                IL G+ + H    ++H DLKP+N+L+
Sbjct: 105 SYLYQILQGILFCHSRR-VLHRDLKPQNLLI 134

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 39.7 bits (92), Expect = 0.002
 Identities = 44/168 (26%), Positives = 66/168 (39%), Gaps = 54/168 (32%)

Query: 256 KVVDFGNACRANKQFAEE---IQTRQYRAPEVIL-----RAGYSFSVDMWSFACTAFELA 307
           K+VDFG + + ++        I T  + APEVI       A Y F  D+WS   TA E+A
Sbjct: 151 KLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMA 210

Query: 308 TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKF 367
            G    AP      C+     AL +     +PR  A                 R++  K 
Sbjct: 211 EG----APP----LCDMHPMRALFL-----IPRNPA----------------PRLKSKK- 240

Query: 368 WSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
           WS                ++F  F+   L     +RPT +Q ++HP++
Sbjct: 241 WS----------------KKFQSFIESCLVKNHSQRPTTEQLMKHPFI 272

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 261 GNACRANKQFAEE--IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATG 309
           G+  +  ++F ++    T +Y APEVILR GY   VD W+     +E   G
Sbjct: 162 GHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVG 212

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3. Length = 305

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSF 299
           K +  L  +D R K+ DFG   + +K   +    + T  + APEVI R  Y   VD+WS 
Sbjct: 144 KSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRTPYGTEVDIWSL 203

Query: 300 ACTAFELATGD 310
                E+  G+
Sbjct: 204 GIMVIEMVDGE 214

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 38/152 (25%), Positives = 57/152 (37%), Gaps = 26/152 (17%)

Query: 34  NGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGD 93
               Y+   KLG G ++ V+          VALK+     +                +G 
Sbjct: 3   AATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTE----------------EGV 46

Query: 94  PSNEKCVIRLIDHFKHAGPNGQH--------LCMVLEFLGDSLLRLIKYSRYKGLELNKV 145
           P        L+   KHA     H        L  V E++   L + +      GL    V
Sbjct: 47  PFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVFEYMHTDLAQYMI-QHPGGLHPYNV 105

Query: 146 REICKYILTGLDYLHRELGIIHTDLKPENILL 177
           R     +L GL Y+H +  I+H DLKP+N+L+
Sbjct: 106 RLFMFQLLRGLAYIHGQ-HILHRDLKPQNLLI 136

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recessive form of juvenile ALS. The function of PFTAIRE-2 is not yet known. Length = 291

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 6/64 (9%)

Query: 116 HLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPE 173
            L  V+E++  GD +  + +  R+      + R     I+ GL +LH E GII+ DLK +
Sbjct: 70  RLFFVMEYVNGGDLMFHIQRSGRFD---EPRARFYAAEIVLGLQFLH-ERGIIYRDLKLD 125

Query: 174 NILL 177
           N+LL
Sbjct: 126 NVLL 129

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 44/187 (23%), Positives = 70/187 (37%), Gaps = 56/187 (29%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQT----RQYRAPEVILRAGYSFSVDMWS 298
           KPE  L        + DFG  C+ N +  ++  T     +Y APE++L  GY+ +VD W+
Sbjct: 120 KPENILLDYQGHIALCDFG-LCKLNMKDDDKTNTFCGTPEYLAPELLLGHGYTKAVDWWT 178

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
                +E+ TG   F          DE+        + +M RKI                
Sbjct: 179 LGVLLYEMLTGLPPFY---------DEN--------VNEMYRKI---------------- 205

Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKR---PTAQQCLQHPWL 415
                          L +  RF +   R+  + L+ LL   P +R     AQ+   HP+ 
Sbjct: 206 ---------------LQEPLRFPDGFDRDAKDLLIGLLSRDPTRRLGYNGAQEIKNHPFF 250

Query: 416 SLRNSTR 422
           S  +  +
Sbjct: 251 SQLSWKK 257

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Length = 312

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 39/142 (27%), Positives = 59/142 (41%), Gaps = 24/142 (16%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRL 103
           LG G F  V +A    T  Y A+K  K           EI  +  V     + EK ++  
Sbjct: 26  LGTGSFGRVRIAKHKGTGEYYAIKCLKK---------REILKMKQVQH--VAQEKSILME 74

Query: 104 IDH-----FKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREI-CKYILTG 155
           + H        +  +   +  +LEF+  G+    L K  R+     N V +     ++  
Sbjct: 75  LSHPFIVNMMCSFQDENRVYFLLEFVVGGELFTHLRKAGRFP----NDVAKFYHAELVLA 130

Query: 156 LDYLHRELGIIHTDLKPENILL 177
            +YLH    II+ DLKPEN+LL
Sbjct: 131 FEYLH-SKDIIYRDLKPENLLL 151

Length = 329

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 44/189 (23%), Positives = 66/189 (34%), Gaps = 30/189 (15%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       KV DFG A +   +      T +Y APEVI   G+  +VD W+    
Sbjct: 145 KPENLLLDNKGHVKVTDFGFAKKVPDRTFTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVL 204

Query: 303 AFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKM--PR------KIAIGGAQSKDYFD 354
            +E   G   + P     F +D         L G++  P       +  + G    D+  
Sbjct: 205 LYEFIAG---YPP-----FFDDTPFRIYEKILAGRLKFPNWFDGRARDLVKGLLQTDHTK 256

Query: 355 RHGDLKR----IRRLKFWS---LDRLLVDKY-------RFSETDAREFAEFLVPLLDFTP 400
           R G LK     ++   ++     D+L    Y         S  D   F ++    +D  P
Sbjct: 257 RLGTLKGGVADVKNHPYFHGANWDKLYARYYPAPIPVRVKSPGDTSNFEKYPDSPVDRLP 316

Query: 401 EKRPTAQQC 409
                 Q  
Sbjct: 317 PLTAAQQAE 325

Length = 329

>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 34/149 (22%)

Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKI-QKSAAQFAQAALH---EIEVLSAVADGDPSNE 97
           + +G G F  V L     T++  A+K  +K+       A H   E ++L A AD    NE
Sbjct: 7   KTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDIL-AEAD----NE 61

Query: 98  KCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIK-------YSRYKGLELNKVREI 148
             V++L   F+    +  +L  V++++  GD +  LI+        +R+   EL      
Sbjct: 62  -WVVKLYYSFQ----DKDNLYFVMDYIPGGDMMSLLIRLGIFEEDLARFYIAEL-----T 111

Query: 149 CKYILTGLDYLHRELGIIHTDLKPENILL 177
           C      ++ +H+ +G IH D+KP+NIL+
Sbjct: 112 C-----AIESVHK-MGFIHRDIKPDNILI 134

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Length = 376

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 20/138 (14%)

Query: 44  LGWGQFSIVWLA-YDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIR 102
           +G G+F  V L  Y  +    VA+K  K  +  AQA L E  V++ +      N   ++ 
Sbjct: 14  IGKGEFGDVMLGDYRGQK---VAVKCLKDDSTAAQAFLAEASVMTTLRH---PNLVQLLG 67

Query: 103 LIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVRE---ICKYILTGLDYL 159
           ++         G  L +V E++      L+ Y R +G  +  + +       +  G++YL
Sbjct: 68  VV-------LQGNPLYIVTEYMAKG--SLVDYLRSRGRAVITLAQQLGFALDVCEGMEYL 118

Query: 160 HRELGIIHTDLKPENILL 177
             E   +H DL   N+L+
Sbjct: 119 E-EKNFVHRDLAARNVLV 135

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 39.7 bits (92), Expect = 0.002
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSF 299
           K +  L G+D   K+ DFG   +   + ++    + T  + APEV+ R  Y   VD+WS 
Sbjct: 142 KSDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSL 201

Query: 300 ACTAFELATGD 310
              A E+  G+
Sbjct: 202 GIMAIEMVEGE 212

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 18/80 (22%)

Query: 256 KVVDFGNACRAN-------KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 308
           K+ DFG  C+ N       + F     T  Y APE+I    Y  SVD W+F    +E+  
Sbjct: 141 KIADFG-MCKENIFGGKTTRTFC---GTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLA 196

Query: 309 GDMLFAPKSGQGFCEDEDHL 328
           G     P  G    EDED L
Sbjct: 197 GQ---PPFDG----EDEDEL 209

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 256 KVVDFGNA------CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 308
           K+ DFG +      C +         T  + +PEVI   GY    D+WS  CT  E+ T
Sbjct: 144 KLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLT 202

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 44/171 (25%), Positives = 65/171 (38%), Gaps = 56/171 (32%)

Query: 252 DMRCKVVDFGNACRANKQFAEEIQTRQ-------YRAPEVILRAGYSFSVDMWSFACTAF 304
           D R K+ DFG  C    Q ++E+  R+       + APEVI R  Y   VD+WS      
Sbjct: 151 DGRVKLSDFG-FC---AQVSKEVPRRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVI 206

Query: 305 ELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRR 364
           E+  G+  +          +E  L  M  +   +P K+            ++      R 
Sbjct: 207 EMVDGEPPYF---------NEPPLQAMKRIRDNLPPKL------------KNLHKVSPRL 245

Query: 365 LKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
             F  LDR+LV          R+            P +R TA + L HP+L
Sbjct: 246 RSF--LDRMLV----------RD------------PAQRATAAELLNHPFL 272

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

 Score = 38.9 bits (90), Expect = 0.003
 Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 18/147 (12%)

Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKI----QKSAAQFAQAALHEIEVLSAVADGD 93
           Y    KLG G ++ V+          VALK+    ++    F   A+ E  +L  +   +
Sbjct: 7   YEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFT--AIREASLLKGLKHAN 64

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYIL 153
                  I L+    H     + L +V E++   L + +      GL    V+     +L
Sbjct: 65  -------IVLLHDIIHTK---ETLTLVFEYVHTDLCQYMD-KHPGGLHPENVKLFLFQLL 113

Query: 154 TGLDYLHRELGIIHTDLKPENILLVST 180
            GL Y+H+   I+H DLKP+N+L+  T
Sbjct: 114 RGLSYIHQRY-ILHRDLKPQNLLISDT 139

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 and is inhibited by the p21 cell cycle inhibitor. It has also been shown to interact with the membrane-associated cyclin Y, which recruits the protein to the plasma membrane. Length = 303

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 38.9 bits (90), Expect = 0.003
 Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 7/131 (5%)

Query: 185 KDPIRSGLTPILE-RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPK 243
           +DP    L+  +E  P GSI     +   + E   +R  ++ +  +S   ++M      K
Sbjct: 74  RDPEEKKLSIFVEYMPGGSIKDQLKAYGALTENVTRRYTRQILQGVSYLHSNMIVHRDIK 133

Query: 244 PERCLDGIDMRCKVVDFGNA------CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 297
               L       K+ DFG +      C +         T  + +PEVI   GY    D+W
Sbjct: 134 GANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMSPEVISGEGYGRKADVW 193

Query: 298 SFACTAFELAT 308
           S ACT  E+ T
Sbjct: 194 SVACTVVEMLT 204

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSF 299
           K +  L G+D   K+ DFG   +   + ++    + T  + APEV+ R  Y   VD+WS 
Sbjct: 142 KSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSL 201

Query: 300 ACTAFELATGD 310
              A E+  G+
Sbjct: 202 GIMAIEMVEGE 212

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 16/140 (11%)

Query: 43  KLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADGDPSNEKC 99
           +LG G +  V+      T   +A+K   ++   ++F Q  + E+++L           K 
Sbjct: 8   ELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQI-IMELDIL----------HKA 56

Query: 100 VIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLI-KYSRYKGLELNKVREICKYILTGLD 157
           V   I  F  A      + M +E++   SL +L       +G+  + +R I   ++ GL 
Sbjct: 57  VSPYIVDFYGAFFIEGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLK 116

Query: 158 YLHRELGIIHTDLKPENILL 177
           +L  E  IIH D+KP N+L+
Sbjct: 117 FLKEEHNIIHRDVKPTNVLV 136

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 39.3 bits (91), Expect = 0.003
 Identities = 38/145 (26%), Positives = 72/145 (49%), Gaps = 20/145 (13%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADGD 93
           +Y    K+G G    V+ A D  T   VA+K   +QK   +  +  ++EI V+  + + +
Sbjct: 20  KYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKK--ELIINEILVMKELKNPN 77

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYI 152
                 ++  +D F      G  L +V+E+L G SL  ++  +    ++  ++  +C+  
Sbjct: 78  ------IVNFLDSFL----VGDELFVVMEYLAGGSLTDVVTET---CMDEAQIAAVCREC 124

Query: 153 LTGLDYLHRELGIIHTDLKPENILL 177
           L  L++LH    +IH D+K +N+LL
Sbjct: 125 LQALEFLHAN-QVIHRDIKSDNVLL 148

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 46/155 (29%), Positives = 67/155 (43%), Gaps = 41/155 (26%)

Query: 42  RKLGWGQFSIVWLA-YD---TRTSSYVALK-IQKSAAQFAQAALH-EIEVLSAVADGDPS 95
           ++LG G F  V L  YD     T   VA+K +  S  +  ++    EIE+L         
Sbjct: 10  KQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEIL--------- 60

Query: 96  NEKCVIRLIDH---FKHAG----PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVR-- 146
                 R +DH    K+ G    P G+ L +++E+L    LR   Y +    ++N  R  
Sbjct: 61  ------RTLDHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLR--DYLQRHRDQINLKRLL 112

Query: 147 ----EICKYILTGLDYLHRELGIIHTDLKPENILL 177
               +ICK    G+DYL      IH DL   NIL+
Sbjct: 113 LFSSQICK----GMDYLG-SQRYIHRDLAARNILV 142

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

 Score = 38.8 bits (90), Expect = 0.003
 Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 14/142 (9%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRL 103
           +G G +  V+   + +  S  A+KI        +    E  +L A++D  P+    V++ 
Sbjct: 26  IGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYNILKALSD-HPN----VVKF 80

Query: 104 ID-HFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYIL----TGLD 157
              ++K    NG  L +VLE   G S+  L+K    +G  + +   I  YIL     GL 
Sbjct: 81  YGMYYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEP--IIAYILHEALMGLQ 138

Query: 158 YLHRELGIIHTDLKPENILLVS 179
           +LH     IH D+K  NILL +
Sbjct: 139 HLH-VNKTIHRDVKGNNILLTT 159

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear hair cells. It is localized to the distal ends of actin-bundled structures. Mutations in human myosin IIIA are responsible for progressive nonsyndromic hearing loss. Human myosin IIIA possesses ATPase and kinase activities, and the ability to move actin filaments in a motility assay. It may function as a cellular transporter capable of moving along actin bundles in sensory cells. Length = 286

>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

 Score = 38.9 bits (90), Expect = 0.003
 Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 26/144 (18%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRL 103
           LG G F  V+L YD  T   +A K      QF   +    + +SA+        +C I+L
Sbjct: 10  LGQGAFGRVYLCYDVDTGRELAAK----QVQFDPESPETSKEVSAL--------ECEIQL 57

Query: 104 IDHFKHAGPNGQHLCM----------VLEFL-GDSLLRLIKYSRYKGLELNKVREICKYI 152
           + + +H      + C+           +E++ G S+   +K   Y  L  +  R+  + I
Sbjct: 58  LKNLQHERIVQYYGCLRDRAEKTLTIFMEYMPGGSVKDQLK--AYGALTESVTRKYTRQI 115

Query: 153 LTGLDYLHRELGIIHTDLKPENIL 176
           L G+ YLH  + I+H D+K  NIL
Sbjct: 116 LEGMSYLHSNM-IVHRDIKGANIL 138

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 30/80 (37%), Positives = 36/80 (45%), Gaps = 18/80 (22%)

Query: 256 KVVDFGNACRAN-------KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 308
           K+ DFG  C+ N       K F     T  Y APE+I    Y  SVD W+F    +E+  
Sbjct: 141 KIADFG-MCKENMWDGVTTKTFC---GTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLA 196

Query: 309 GDMLFAPKSGQGFCEDEDHL 328
           G    AP  G    EDED L
Sbjct: 197 GQ---APFEG----EDEDEL 209

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score = 38.8 bits (90), Expect = 0.003
 Identities = 46/187 (24%), Positives = 76/187 (40%), Gaps = 36/187 (19%)

Query: 252 DMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWSFACTAFELA 307
           D   K+ DFG  C+        ++    T +Y APEV+    Y  +VD W      +E+ 
Sbjct: 131 DGHIKITDFG-LCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMM 189

Query: 308 TGDMLFAPKSGQGFCEDEDHL--ALMMELIGKMPRKIA------IGGAQSKDYFDRHG-- 357
            G + F       + +D + L   ++ME I + PR ++      + G   KD   R G  
Sbjct: 190 CGRLPF-------YNQDHERLFELILMEEI-RFPRTLSPEAKSLLAGLLKKDPKQRLGGG 241

Query: 358 --DLKRIRRLKFWS-------LDRLLVDKYR---FSETDAREF-AEFLVPLLDFTPEKRP 404
             D K +   +F+        + + L+  ++    SE D R F  EF    +  TP  R 
Sbjct: 242 PSDAKEVMEHRFFLSINWQDVVQKKLLPPFKPQVTSEVDTRYFDDEFTAQSITITPPDRY 301

Query: 405 TAQQCLQ 411
            +   L+
Sbjct: 302 DSLGLLE 308

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score = 38.9 bits (90), Expect = 0.004
 Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 8/134 (5%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRL 103
           LG G F  V L  +  +  Y A+KI K     A+  +      S V              
Sbjct: 3   LGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHP------F 56

Query: 104 IDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHREL 163
           +   K++      LC V+E++    L     SR +    ++ R     I++ LDYLH   
Sbjct: 57  LTSLKYSFQTKDRLCFVMEYVNGGEL-FFHLSRERVFSEDRTRFYGAEIVSALDYLHSG- 114

Query: 164 GIIHTDLKPENILL 177
            I++ DLK EN++L
Sbjct: 115 KIVYRDLKLENLML 128

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional

 Score = 39.7 bits (92), Expect = 0.004
 Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 22/157 (14%)

Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNE 97
           Y   +K+G G+F  V+L    RT  +   K        +   L E E    V + +   E
Sbjct: 15  YEVIKKIGNGRFGEVFLVKHKRTQEFFCWK------AISYRGLKEREKSQLVIEVNVMRE 68

Query: 98  ---KCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIK--YSRYKGLELNKVREICK 150
              K ++R ID F +     Q L +++EF   GD L R I+  Y  +  +E + + +I +
Sbjct: 69  LKHKNIVRYIDRFLNKA--NQKLYILMEFCDAGD-LSRNIQKCYKMFGKIEEHAIVDITR 125

Query: 151 YILTGLDYLHRELG------IIHTDLKPENILLVSTI 181
            +L  L Y H          ++H DLKP+NI L + I
Sbjct: 126 QLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGI 162

Length = 1021

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 18/142 (12%)

Query: 42  RKLGWGQFSIVWLAYDTRTSS--YVALKIQKSAAQFAQA---ALHEIEVLSAVADGDPSN 96
           R LG G F  V  A   R +   Y   K++K   +  +    AL+E ++L  V      N
Sbjct: 6   RVLGKGGFGEV-CACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKV------N 58

Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYK-GLELNKVREICKYILTG 155
            + V+ L     +A      LC+VL  +    L+   Y+    G +  +       I  G
Sbjct: 59  SRFVVSL----AYAYETKDALCLVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCG 114

Query: 156 LDYLHRELGIIHTDLKPENILL 177
           L+ LHRE  I++ DLKPENILL
Sbjct: 115 LEDLHRE-RIVYRDLKPENILL 135

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score = 38.8 bits (90), Expect = 0.004
 Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 243 KPERCLDGIDMRCKVVDFGNA---CRANKQFAEEIQTRQYRAPEVIL-RAGYSFSVDMWS 298
           KPE  L        + DFG +      NK       T +Y APEV+L   GY+  VD WS
Sbjct: 123 KPENILLDATGHIALCDFGLSKANLTDNKTTNTFCGTTEYLAPEVLLDEKGYTKHVDFWS 182

Query: 299 FACTAFELATG-DMLFAPKSGQ 319
                FE+  G    +A  + Q
Sbjct: 183 LGVLVFEMCCGWSPFYAEDTQQ 204

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|173717 cd05628, STKc_NDR1, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

 Score = 38.9 bits (90), Expect = 0.004
 Identities = 66/283 (23%), Positives = 109/283 (38%), Gaps = 56/283 (19%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRL 103
           +G G F  V L     T    A+KI + A    +  +  I      A+ D   E   + +
Sbjct: 9   IGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIR-----AERDILVEADSLWV 63

Query: 104 IDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR 161
           +  F ++  +  +L +++EFL  GD +  L+K      L   + +      +  +D +H 
Sbjct: 64  VKMF-YSFQDKLNLYLIMEFLPGGDMMTLLMKKDT---LTEEETQFYIAETVLAIDSIH- 118

Query: 162 ELGIIHTDLKPENILLVST--IDPSKDPIRSGLTPILERPE--GSINGGSTSTMTIVEKK 217
           +LG IH D+KP+N+LL S   +  S   + +GL     R E   ++N    S  T     
Sbjct: 119 QLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKA-HRTEFYRNLNHSLPSDFTFQNMN 177

Query: 218 LKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA-EEIQT 276
            KR+A+                                         R  +Q A   + T
Sbjct: 178 SKRKAE--------------------------------------TWKRNRRQLAFSTVGT 199

Query: 277 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQ 319
             Y APEV ++ GY+   D WS     +E+  G   F  ++ Q
Sbjct: 200 PDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQ 242

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, muscle, lung and spleen. It is not an essential protein because mice deficient of NDR1 remain viable and fertile. However, these mice develop T-cell lymphomas and appear to be hypersenstive to carcinogenic treatment. NDR1 appears to act as a tumor suppressor. NDR1 is also called STK38. Length = 363

>gnl|CDD|165211 PHA02882, PHA02882, putative serine/threonine kinase; Provisional

 Score = 38.8 bits (90), Expect = 0.004
 Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 18/155 (11%)

Query: 35  GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQ---KSAAQFAQAALHEIEVLSAVAD 91
           G  +   + +G G F  V   Y+T+ +S   +  Q   K      +  + E  V + + D
Sbjct: 11  GKEWKIDKLIGCGGFGCV---YETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYD 67

Query: 92  GDPSNEKCVIRLIDHF---KHAGPNGQHLCMV------LEFLGDSLLRLIKYSRYKGLEL 142
            D       I  IDH    K+ G      C +      LE L ++   + K  + K  +L
Sbjct: 68  IDKIALWKNIHNIDHLGIPKYYGCGSFKRCRMYYRFILLEKLVENTKEIFKRIKCKNKKL 127

Query: 143 NKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
             ++ I K +LT L+Y+H E GI H D+KPENI++
Sbjct: 128 --IKNIMKDMLTTLEYIH-EHGISHGDIKPENIMV 159

Length = 294

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 17/77 (22%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ----------TRQYRAPEVILRAGYSF 292
           KPE  L       K+ DFG  C+      E I           T +Y APE+++R+G+  
Sbjct: 127 KPENILLDAQGHVKLTDFG-LCK------ESIHEGTVTHTFCGTIEYMAPEILMRSGHGK 179

Query: 293 SVDMWSFACTAFELATG 309
           +VD WS     +++ TG
Sbjct: 180 AVDWWSLGALMYDMLTG 196

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	447
KOG1290	590	consensus Serine/threonine protein kinase [Signal	100.0
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
PTZ00284	467	protein kinase; Provisional	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	100.0
KOG4717	864	consensus Serine/threonine protein kinase [Signal	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
KOG0610	459	consensus Putative serine/threonine protein kinase	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
PHA03209	357	serine/threonine kinase US3; Provisional	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
PHA03207	392	serine/threonine kinase US3; Provisional	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	100.0
PHA03211	461	serine/threonine kinase US3; Provisional	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	100.0
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	100.0
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	100.0
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	100.0
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	100.0
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	100.0
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	100.0
PHA03210	501	serine/threonine kinase US3; Provisional	100.0
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	100.0
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	100.0
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	100.0
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	100.0
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	100.0
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	100.0
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	100.0
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	100.0
PLN00009	294	cyclin-dependent kinase A; Provisional	100.0
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	100.0
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	100.0
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	100.0
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	100.0
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	100.0
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	100.0
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	100.0
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	100.0
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	100.0
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	100.0
KOG0690	516	consensus Serine/threonine protein kinase [Signal	100.0
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	100.0
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	100.0
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	100.0
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	100.0
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	100.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	100.0
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	100.0
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	100.0
KOG0586	596	consensus Serine/threonine protein kinase [General	100.0
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	100.0
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	100.0
KOG0596	677	consensus Dual specificity; serine/threonine and t	100.0
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	100.0
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	100.0
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	100.0
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	100.0
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	100.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	100.0
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	100.0
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	100.0
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	100.0
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	100.0
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	100.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	100.0
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	100.0
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	100.0
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	100.0
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	100.0
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	100.0
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	100.0
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	100.0
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	100.0
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	100.0
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	100.0
KOG0577	948	consensus Serine/threonine protein kinase [Signal	100.0
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	100.0
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	100.0
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	100.0
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	100.0
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	100.0
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	100.0
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	100.0
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	100.0
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	100.0
PTZ00024	335	cyclin-dependent protein kinase; Provisional	100.0
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	100.0
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	100.0
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	100.0
KOG0607	463	consensus MAP kinase-interacting kinase and relate	100.0
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	100.0
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	100.0
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	100.0
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	100.0
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	100.0
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	100.0
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	100.0
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	100.0
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	100.0
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	100.0
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	100.0
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	100.0
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	100.0
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	100.0
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	100.0
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	100.0
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
PHA02882	294	putative serine/threonine kinase; Provisional	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
KOG0584	632	consensus Serine/threonine protein kinase [General	100.0
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	100.0
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	100.0
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	100.0
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
KOG0696	683	consensus Serine/threonine protein kinase [Signal	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	100.0
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	100.0
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	100.0
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	100.0
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	100.0
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	100.0
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
KOG1167	418	consensus Serine/threonine protein kinase of the C	100.0
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	100.0
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	100.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	100.0
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	100.0
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	100.0
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	100.0
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	100.0
KOG2052	513	consensus Activin A type IB receptor, serine/threo	100.0
KOG0695	593	consensus Serine/threonine protein kinase [Signal	100.0
KOG1027	903	consensus Serine/threonine protein kinase and endo	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	100.0
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.97
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.97
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.97
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
KOG3653	534	consensus Transforming growth factor beta/activin	99.97
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.97
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.97
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.96
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.96
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.96
KOG1152	772	consensus Signal transduction serine/threonine kin	99.96
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.95
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.95
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.95
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.95
PLN00181	793	protein SPA1-RELATED; Provisional	99.94
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.93
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.92
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.91
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.91
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.91
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.9
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.9
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.88
PRK09188	365	serine/threonine protein kinase; Provisional	99.86
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.82
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.82
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.82
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.81
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.81
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.8
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.79
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.77
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.76
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.76
PRK10345	210	hypothetical protein; Provisional	99.73
PRK12274	218	serine/threonine protein kinase; Provisional	99.72
smart00090	237	RIO RIO-like kinase.	99.68
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.66
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.61
PRK14879	211	serine/threonine protein kinase; Provisional	99.58
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.56
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.53
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.52
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.51
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.5
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.41
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.41
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.35
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.24
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.19
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.18
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.17
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.13
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.12
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.08
KOG1243	690	consensus Protein kinase [General function predict	99.0
KOG3087	229	consensus Serine/threonine protein kinase [General	98.87
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.76
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.73
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.61
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.55
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.52
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.44
COG4248	637	Uncharacterized protein with protein kinase and he	98.36
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.31
PRK09902	216	hypothetical protein; Provisional	98.29
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.18
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	98.16
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	98.02
PF01636	239	APH: Phosphotransferase enzyme family This family	97.88
KOG1235	538	consensus Predicted unusual protein kinase [Genera	97.86
COG0661	517	AarF Predicted unusual protein kinase [General fun	97.83
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	97.73
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	97.69
KOG0576	829	consensus Mitogen-activated protein kinase kinase	97.69
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	97.63
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	97.43
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	97.28
PLN02876	822	acyl-CoA dehydrogenase	97.25
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	97.13
KOG2270	520	consensus Serine/threonine protein kinase involved	97.13
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	96.88
PRK09550	401	mtnK methylthioribose kinase; Reviewed	96.84
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	96.69
KOG1093	725	consensus Predicted protein kinase (contains TBC a	96.62
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	96.17
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	96.16
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	95.75
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	95.75
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	95.75
PRK05231	319	homoserine kinase; Provisional	95.59
KOG2268	465	consensus Serine/threonine protein kinase [Signal	95.53
KOG1826	2724	consensus Ras GTPase activating protein RasGAP/neu	95.49
PRK12396	409	5-methylribose kinase; Reviewed	95.45
PRK10593	297	hypothetical protein; Provisional	95.29
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	95.06
PLN02756	418	S-methyl-5-thioribose kinase	94.79
PLN02236	344	choline kinase	94.46
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	94.36
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	94.22
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	93.31
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	92.64
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	92.25
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	92.2
KOG1236	565	consensus Predicted unusual protein kinase [Genera	92.07
COG2334	331	Putative homoserine kinase type II (protein kinase	90.67
PRK11768	325	serine/threonine protein kinase; Provisional	89.09
PF03109	119	ABC1: ABC1 family; InterPro: IPR004147 This entry	85.07
PTZ00384	383	choline kinase; Provisional	84.9
PTZ00296	442	choline kinase; Provisional	81.69
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	80.01

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-67  Score=515.79  Aligned_cols=420  Identities=56%  Similarity=1.010  Sum_probs=348.6

Q ss_pred             CCCCCCCCCCCCccccCCCCCCCccccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHH
Q 013220            1 MSCSSSSGSEDDDEGIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAAL   80 (447)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~   80 (447)
                      |+|+..++.++++|...+|+.||||||.+||+++++||.++++||+|.|+|||+|+|...++.||+|+.+......+...
T Consensus        43 ~~~~~~g~~~~eqE~~~dY~kGGYHpV~IGD~F~~gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAqhYtEaAl  122 (590)
T KOG1290|consen   43 MSSSILGSDDEEQEDPEDYRKGGYHPVRIGDVFNGGRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQHYTEAAL  122 (590)
T ss_pred             CccccccCCcccccChhhhhcCCCceeeccccccCceEEEEEeccccccceeEEEeeccCCeEEEEEEEehhhHHHHHHH
Confidence            67888888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCC--CCCcceeeeecccccccCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHH
Q 013220           81 HEIEVLSAVADGD--PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDY  158 (447)
Q Consensus        81 ~E~~~l~~l~~~~--~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~  158 (447)
                      +||++|+.+....  ..+-.+||++++.|...+++|.|+|||+|++|..|+.++.+..+++++...++.|++||+.||.|
T Consensus       123 DEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGpNG~HVCMVfEvLGdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdY  202 (590)
T KOG1290|consen  123 DEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGPNGQHVCMVFEVLGDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDY  202 (590)
T ss_pred             HHHHHHHHHHhcCCCCCCCceeeeeeccceecCCCCcEEEEEehhhhhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHH
Confidence            9999999998655  66778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCcccccCCCCCeEeeec-CCCCCCcccCCCCCCcCC--CCCCCCCCC------------CCchHHHHHHHHHHHh
Q 013220          159 LHRELGIIHTDLKPENILLVST-IDPSKDPIRSGLTPILER--PEGSINGGS------------TSTMTIVEKKLKRRAK  223 (447)
Q Consensus       159 lH~~~gIiH~Dikp~Nill~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~------------~~~~~~~~~~~~~~~~  223 (447)
                      ||.++||||.||||+|||++.. .......+..+..+...+  +.+.....+            ....-.-.++..+.++
T Consensus       203 LH~ecgIIHTDlKPENvLl~~~e~~~~~~~~~a~e~~~~~p~~s~s~~~t~~d~~~~~~~~~~s~~~~k~~~kk~~r~~~  282 (590)
T KOG1290|consen  203 LHRECGIIHTDLKPENVLLCSTEIDPAKDAREAGEATTSLPKMSPSAVSTRPDALQRMAAEPMSKSKFKKMKKKLKRQAK  282 (590)
T ss_pred             HHHhcCccccCCCcceeeeeccccchhhhhhhhccccccCCCCCcccccccccccchhhccccchhhHHHHHHHHhhhhh
Confidence            9999999999999999999887 233333333331111111  111111110            1111111111111111


Q ss_pred             hhhhh------------------------h--hhhhcccC--------CCCCCCC-------------------------
Q 013220          224 RAVAN------------------------I--SIRRASMG--------GIELPKP-------------------------  244 (447)
Q Consensus       224 ~~~~~------------------------~--~~~~~~~~--------~~~~~~~-------------------------  244 (447)
                      +....                        .  ..+.....        ..++...                         
T Consensus       283 ~~~~~l~~~~~~~~~~~~~s~n~~~~~n~~~~~v~~~~~~~~~~~~~~~~n~~~k~~e~~~~~~~sl~~~~~~~~~t~~~  362 (590)
T KOG1290|consen  283 KLEASLAGLEGIEEEPNQESYNNEPRINGNESTVERSTLEEDSNENGNRENLPIKSPENFRGNNTSLPESQLRDSATPSD  362 (590)
T ss_pred             hhhhhhcccccccccccccccccccCCCccccchhhcccccccccccCCccccccCccccccccccccchhccccccccc
Confidence            11110                        0  00000000        0000000                         


Q ss_pred             ----C----------------ccCCCcccceeEeecCcccccccccccCCCCCCccChHHhhcCCCCccchhHhHHHHHH
Q 013220          245 ----E----------------RCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAF  304 (447)
Q Consensus       245 ----~----------------~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~  304 (447)
                          .                .........|||+|||.|+......+....|..|+|||++.+..|++.+||||++|+++
T Consensus       363 ~~~~s~~s~~~~~~n~~v~p~~~~~~~di~vKIaDlGNACW~~khFT~DIQTRQYRapEVllGsgY~~~ADiWS~AC~~F  442 (590)
T KOG1290|consen  363 GSLSSPSSPGTIASNPLVNPDIPLPECDIRVKIADLGNACWVHKHFTEDIQTRQYRAPEVLLGSGYSTSADIWSTACMAF  442 (590)
T ss_pred             ccccCcCCccccccccccCCCCCCCccceeEEEeeccchhhhhhhhchhhhhhhccCcceeecCCCCCchhHHHHHHHHH
Confidence                0                01234567899999999999998889999999999999999999999999999999999


Q ss_pred             HHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhh
Q 013220          305 ELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETD  384 (447)
Q Consensus       305 ~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (447)
                      +|+||-++|...+...+..++++++.|++++|.+|..++..+.++++||++.|.++.++...+|.+..++...+.++.+.
T Consensus       443 ELaTGDyLFePhsG~~Y~rDEDHiA~i~ELLG~iPr~ia~~Gk~SRdFFnr~G~LrhI~~LK~WpL~~VL~eKY~~s~e~  522 (590)
T KOG1290|consen  443 ELATGDYLFEPHSGENYSRDEDHIALIMELLGKIPRKIALGGKYSRDFFNRRGELRHIRRLKPWPLYEVLIEKYEWSEED  522 (590)
T ss_pred             HhhcCceeecCCCCCCCCccHHHHHHHHHHHhhccHHHHhcCcchHhhhccccceecccccCCCcHHHHHHHHhCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccCCCCCCChHHHhcCcccccccC
Q 013220          385 AREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       385 ~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~  420 (447)
                      ..+|.+||.-||+++|+|||||.++|+|||+...-.
T Consensus       523 A~~fsdFL~PmLef~PeKR~tA~~cl~hPwLn~~~~  558 (590)
T KOG1290|consen  523 AQQFSDFLSPMLEFDPEKRPTAAQCLKHPWLNPVAG  558 (590)
T ss_pred             HHHHHHHHHHHHhcCccccccHHHHhcCccccCCCC
Confidence            999999999999999999999999999999996654

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=100.00  E-value=3.3e-51  Score=416.59  Aligned_cols=313  Identities=37%  Similarity=0.587  Sum_probs=268.8

Q ss_pred             cccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeec
Q 013220           25 HAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLI  104 (447)
Q Consensus        25 ~~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~  104 (447)
                      +.+.++|.+. .+|.+.+.||+|+||.|-+|++..+++.||||+++......++...|+.+|..+......+.-|||+++
T Consensus       176 Y~~v~~d~i~-~rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~  254 (586)
T KOG0667|consen  176 YQLVVNDHIA-YRYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKRFLRQAQIEIRILELLNKHDPDDKYNIVRML  254 (586)
T ss_pred             eeEEecceeE-EEEEEEEEecccccceeEEEEecCCCcEEEEEeeccChHHHHHHHHHHHHHHHHhccCCCCCeeEEEee
Confidence            4566788887 499999999999999999999999999999999999999999999999999999855555788999999


Q ss_pred             ccccccCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCC
Q 013220          105 DHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       105 ~~~~~~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~  184 (447)
                      ++|.+.    .|+|||+|.++..|+++++.+...+++...++.++.||+.||.+||+. ||||+||||+|||+...    
T Consensus       255 d~F~fr----~HlciVfELL~~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l-~IIHcDLKPENILL~~~----  325 (586)
T KOG0667|consen  255 DYFYFR----NHLCIVFELLSTNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHEL-GIIHCDLKPENILLKDP----  325 (586)
T ss_pred             eccccc----cceeeeehhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CeeeccCChhheeeccC----
Confidence            999975    799999999999999999999999999999999999999999999995 99999999999999652    


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                        ....+||+|||.|+
T Consensus       326 ------------------------------------------------------------------~r~~vKVIDFGSSc  339 (586)
T KOG0667|consen  326 ------------------------------------------------------------------KRSRIKVIDFGSSC  339 (586)
T ss_pred             ------------------------------------------------------------------CcCceeEEeccccc
Confidence                                                                              23479999999999


Q ss_pred             ccccccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhh
Q 013220          265 RANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  344 (447)
Q Consensus       265 ~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (447)
                      ...+....++.+.+|+|||+|.|.+|+.+.||||||||++||++|.+.|++.      +..++++.|++++|.+|..++.
T Consensus       340 ~~~q~vytYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~------ne~DQl~~I~e~lG~Pp~~mL~  413 (586)
T KOG0667|consen  340 FESQRVYTYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGD------NEYDQLARIIEVLGLPPPKMLD  413 (586)
T ss_pred             ccCCcceeeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccCCC------CHHHHHHHHHHHhCCCCHHHHH
Confidence            9888888889999999999999999999999999999999999999999988      5899999999999999999999


Q ss_pred             CCCCccchhcc-cchhhhhhhcccC---------chhHHhhhhcC-----------CChhhHHHHHHHHhhccccCCCCC
Q 013220          345 GGAQSKDYFDR-HGDLKRIRRLKFW---------SLDRLLVDKYR-----------FSETDAREFAEFLVPLLDFTPEKR  403 (447)
Q Consensus       345 ~~~~~~~~~~~-~~~~~~~~~~~~~---------~~~~~~~~~~~-----------~~~~~~~~l~~ll~~~L~~dP~kR  403 (447)
                      .+.+..-+|+. .+...........         ..-........           ........|.|||.+||++||.+|
T Consensus       414 ~~~~~~kff~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~P~~~~~l~~~~~~~~~~~F~dflk~~L~~dP~~R  493 (586)
T KOG0667|consen  414 TAKKAHKFFTSLKGFPRLCVETSAPRGTKSPEVRKYYRKARLERRGPPGSRSLESGLPKADDKLFIDFLKRCLEWDPAER  493 (586)
T ss_pred             hccccceehhccCCceeeeeeecccccccchhhhhhhhhhcccccCCCCCcccchhcccccHHHHHHHHHHHhccCchhc
Confidence            99988888888 4443321111100         00000000101           122345688999999999999999


Q ss_pred             CChHHHhcCccccccc
Q 013220          404 PTAQQCLQHPWLSLRN  419 (447)
Q Consensus       404 pta~elL~hp~f~~~~  419 (447)
                      +|+.|+|+||||+...
T Consensus       494 ~tp~qal~Hpfl~~~~  509 (586)
T KOG0667|consen  494 ITPAQALNHPFLTGTS  509 (586)
T ss_pred             CCHHHHhcCccccccc
Confidence            9999999999999543

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1e-51  Score=398.44  Aligned_cols=257  Identities=33%  Similarity=0.539  Sum_probs=214.5

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHh--------HHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQF--------AQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~--------~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      +.|.+.+.||+|+||+|-+|..+.+++.||||++.++...        ...+.+|+++|+.|      +|||||++++.|
T Consensus       172 d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL------~HP~IV~~~d~f  245 (475)
T KOG0615|consen  172 DYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKL------SHPNIVRIKDFF  245 (475)
T ss_pred             ceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhc------CCCCEEEEeeee
Confidence            6799999999999999999999999999999998876422        23467999999999      899999999999


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCC
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKD  186 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~  186 (447)
                      ...    +..||||||+ ||+|++.+..+..  +.+...+.+++||+.|+.|||+. ||+||||||+|||+...      
T Consensus       246 ~~~----ds~YmVlE~v~GGeLfd~vv~nk~--l~ed~~K~~f~Qll~avkYLH~~-GI~HRDiKPeNILl~~~------  312 (475)
T KOG0615|consen  246 EVP----DSSYMVLEYVEGGELFDKVVANKY--LREDLGKLLFKQLLTAVKYLHSQ-GIIHRDIKPENILLSND------  312 (475)
T ss_pred             ecC----CceEEEEEEecCccHHHHHHhccc--cccchhHHHHHHHHHHHHHHHHc-CcccccCCcceEEeccC------
Confidence            865    6889999999 9999999987654  88888899999999999999995 99999999999999542      


Q ss_pred             cccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccc
Q 013220          187 PIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA  266 (447)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~  266 (447)
                                                                                     ..++.+|++|||+|+..
T Consensus       313 ---------------------------------------------------------------~e~~llKItDFGlAK~~  329 (475)
T KOG0615|consen  313 ---------------------------------------------------------------AEDCLLKITDFGLAKVS  329 (475)
T ss_pred             ---------------------------------------------------------------CcceEEEecccchhhcc
Confidence                                                                           35678999999999876


Q ss_pred             c--cccccCCCCCCccChHHhhcCC---CCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          267 N--KQFAEEIQTRQYRAPEVILRAG---YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       267 ~--~~~~~~~gt~~y~aPE~l~~~~---~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                      .  +.-...|||+.|.|||++....   +..++|||||||++|.+++|.+||.+...     +....+++          
T Consensus       330 g~~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~-----~~sl~eQI----------  394 (475)
T KOG0615|consen  330 GEGSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYT-----DPSLKEQI----------  394 (475)
T ss_pred             ccceehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccC-----CccHHHHH----------
Confidence            3  4445679999999999998654   34589999999999999999999987641     11111111          


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcC----CChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccc
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYR----FSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~  417 (447)
                                                      ...++.    ...+++++..+||.+||..||++|||++|+|+||||+.
T Consensus       395 --------------------------------~~G~y~f~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~hpW~~~  442 (475)
T KOG0615|consen  395 --------------------------------LKGRYAFGPLQWDRISEEALDLINWMLVVDPENRPSADEALNHPWFKD  442 (475)
T ss_pred             --------------------------------hcCcccccChhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhcChhhhc
Confidence                                            111111    22467889999999999999999999999999999997


Q ss_pred             ccCC
Q 013220          418 RNST  421 (447)
Q Consensus       418 ~~~~  421 (447)
                      ....
T Consensus       443 ~~~~  446 (475)
T KOG0615|consen  443 APCL  446 (475)
T ss_pred             cccc
Confidence            6543

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-49  Score=379.13  Aligned_cols=259  Identities=28%  Similarity=0.446  Sum_probs=219.5

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEec--hhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQK--SAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~--~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      +..+..+.||+|..|+||+++|+.+++.+|+|++.  .+....+++.+|+++++..      +||+||++|++|...+  
T Consensus        79 ~dle~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~------~spyIV~~ygaF~~~~--  150 (364)
T KOG0581|consen   79 SDLERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSC------QSPYIVGFYGAFYSNG--  150 (364)
T ss_pred             HHhhhhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhC------CCCCeeeEeEEEEeCC--
Confidence            46788899999999999999999999999999883  4456678899999999999      8999999999999762  


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                       ..+.|+|||| +|+|.+++...  +.+++.....++.+|+.||.|||...+||||||||.|||+               
T Consensus       151 -~~isI~mEYMDgGSLd~~~k~~--g~i~E~~L~~ia~~VL~GL~YLh~~~~IIHRDIKPsNlLv---------------  212 (364)
T KOG0581|consen  151 -EEISICMEYMDGGSLDDILKRV--GRIPEPVLGKIARAVLRGLSYLHEERKIIHRDIKPSNLLV---------------  212 (364)
T ss_pred             -ceEEeehhhcCCCCHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHhhccCeeeccCCHHHeee---------------
Confidence             2699999999 89999998754  4599999999999999999999963499999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc-ccc
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-QFA  271 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~-~~~  271 (447)
                                                                               +..+.+||||||.+..... ...
T Consensus       213 ---------------------------------------------------------NskGeVKicDFGVS~~lvnS~a~  235 (364)
T KOG0581|consen  213 ---------------------------------------------------------NSKGEVKICDFGVSGILVNSIAN  235 (364)
T ss_pred             ---------------------------------------------------------ccCCCEEeccccccHHhhhhhcc
Confidence                                                                     4578899999999986554 456


Q ss_pred             cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccc
Q 013220          272 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  351 (447)
Q Consensus       272 ~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  351 (447)
                      .++||..|||||.+.+..|+.++||||||++++|++.|++||.....    ......+.+..+.-.+|            
T Consensus       236 tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~----~~~~~~~Ll~~Iv~~pp------------  299 (364)
T KOG0581|consen  236 TFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPNP----PYLDIFELLCAIVDEPP------------  299 (364)
T ss_pred             cccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCcCC----CCCCHHHHHHHHhcCCC------------
Confidence            78999999999999999999999999999999999999999986510    12233333333333222            


Q ss_pred             hhcccchhhhhhhcccCchhHHhhhhcCCChh-hHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          352 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSET-DAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                +.+|.. .+++|++|+..||++||.+|||++|+|+|||++...
T Consensus       300 --------------------------P~lP~~~fS~ef~~FV~~CL~Kdp~~R~s~~qLl~Hpfi~~~~  342 (364)
T KOG0581|consen  300 --------------------------PRLPEGEFSPEFRSFVSCCLRKDPSERPSAKQLLQHPFIKKFE  342 (364)
T ss_pred             --------------------------CCCCcccCCHHHHHHHHHHhcCCcccCCCHHHHhcCHHHhhcc
Confidence                                      235554 688999999999999999999999999999999643

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.3e-50  Score=392.04  Aligned_cols=287  Identities=33%  Similarity=0.510  Sum_probs=236.0

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHH--HHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQA--ALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~--~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      -.||.++++||.|+||.||+|+...++..||||.++..-..-++  -.+|+..|+++.     .|+|||++.+++.+.  
T Consensus         9 m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln-----~hpniikL~Evi~d~--   81 (538)
T KOG0661|consen    9 MDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLN-----PHPNIIKLKEVIRDN--   81 (538)
T ss_pred             HHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcC-----CCCcchhhHHHhhcc--
Confidence            37999999999999999999999999999999987766443333  456999999983     499999999999975  


Q ss_pred             CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          113 NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       113 ~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                       ..++|+|||||...|+.+++.. .+.|+++.++.|++||+.||+|+|.+ |+.|||+||+|||+.              
T Consensus        82 -~~~L~fVfE~Md~NLYqLmK~R-~r~fse~~irnim~QilqGL~hiHk~-GfFHRDlKPENiLi~--------------  144 (538)
T KOG0661|consen   82 -DRILYFVFEFMDCNLYQLMKDR-NRLFSESDIRNIMYQILQGLAHIHKH-GFFHRDLKPENILIS--------------  144 (538)
T ss_pred             -CceEeeeHHhhhhhHHHHHhhc-CCcCCHHHHHHHHHHHHHHHHHHHhc-CcccccCChhheEec--------------
Confidence             2399999999999999999876 57899999999999999999999997 999999999999993              


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc--ccc
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQF  270 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~--~~~  270 (447)
                                                                                ....+||+|||+|....  .+.
T Consensus       145 ----------------------------------------------------------~~~~iKiaDFGLARev~SkpPY  166 (538)
T KOG0661|consen  145 ----------------------------------------------------------GNDVIKIADFGLAREVRSKPPY  166 (538)
T ss_pred             ----------------------------------------------------------ccceeEecccccccccccCCCc
Confidence                                                                      24569999999998654  556


Q ss_pred             ccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 AEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      +.++.|.||+|||++.+. .|+.++|||++|||++|+++-+..|++.      ++.+++-.|-+++|++.++.+...   
T Consensus       167 TeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~------sE~Dqi~KIc~VLGtP~~~~~~eg---  237 (538)
T KOG0661|consen  167 TEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGA------SEIDQIYKICEVLGTPDKDSWPEG---  237 (538)
T ss_pred             chhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCC------cHHHHHHHHHHHhCCCccccchhH---
Confidence            788999999999998875 5899999999999999999999999998      588999999999999886542111   


Q ss_pred             cchhcccchhhhhhhcccC-----chhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCCccc
Q 013220          350 KDYFDRHGDLKRIRRLKFW-----SLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE  424 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~~~~  424 (447)
                             .++....+..+.     .+..+      ++ ..+.++.++|.+||.+||++||||+|+|+||||+........
T Consensus       238 -------~~La~~mnf~~P~~~~~~l~~L------~p-~~s~~~~~li~~ll~WDP~kRpTA~~al~~pffq~~~~~~~~  303 (538)
T KOG0661|consen  238 -------YNLASAMNFRFPQVKPSPLKDL------LP-NASSEAASLIERLLAWDPDKRPTASQALQHPFFQVGRASGSS  303 (538)
T ss_pred             -------HHHHHHhccCCCcCCCCChHHh------Cc-ccCHHHHHHHHHHhcCCCccCccHHHHhcCcccccccccccc
Confidence                   122222222221     12222      22 257789999999999999999999999999999987655443


Q ss_pred             cc
Q 013220          425 TK  426 (447)
Q Consensus       425 ~~  426 (447)
                      +.
T Consensus       304 a~  305 (538)
T KOG0661|consen  304 AR  305 (538)
T ss_pred             cc
Confidence            33

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.8e-48  Score=392.79  Aligned_cols=249  Identities=31%  Similarity=0.523  Sum_probs=219.8

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEech----hHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKS----AAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~----~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      .+|...+.||+|+|++||.+++..+|+.||+|++.+    .....+.+.+|+++++.+      .|+|||+++.+|.++ 
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L------~HpnIV~f~~~FEDs-   90 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSL------KHPNIVQFYHFFEDS-   90 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhc------CCCcEEeeeeEeecC-
Confidence            569999999999999999999999999999998776    345567899999999999      899999999999976 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                         ..+|||.|.| .++|..+.++  .+.+.|.+++.+++||+.||.|||+. +|+|||||..|+++             
T Consensus        91 ---~nVYivLELC~~~sL~el~Kr--rk~ltEpEary~l~QIv~GlkYLH~~-~IiHRDLKLGNlfL-------------  151 (592)
T KOG0575|consen   91 ---NNVYIVLELCHRGSLMELLKR--RKPLTEPEARYFLRQIVEGLKYLHSL-GIIHRDLKLGNLFL-------------  151 (592)
T ss_pred             ---CceEEEEEecCCccHHHHHHh--cCCCCcHHHHHHHHHHHHHHHHHHhc-Cceecccchhheee-------------
Confidence               7999999999 8888888873  36799999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc---
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---  267 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~---  267 (447)
                                                                                 +.++++|++|||+|....   
T Consensus       152 -----------------------------------------------------------~~~~~VKIgDFGLAt~le~~~  172 (592)
T KOG0575|consen  152 -----------------------------------------------------------NENMNVKIGDFGLATQLEYDG  172 (592)
T ss_pred             -----------------------------------------------------------cCcCcEEecccceeeeecCcc
Confidence                                                                       557899999999998766   


Q ss_pred             cccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          268 KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       268 ~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                      ......||||-|.|||++.+...++.+||||+||+||.|+.|++||...+          +...                
T Consensus       173 Erk~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~----------vket----------------  226 (592)
T KOG0575|consen  173 ERKKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKT----------VKET----------------  226 (592)
T ss_pred             cccceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccch----------HHHH----------------
Confidence            33556799999999999999999999999999999999999999997553          1111                


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccc
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~  417 (447)
                                            ...+-...+.+|...+.++.+||.+||+.||.+|||++++|.|+||+.
T Consensus       227 ----------------------y~~Ik~~~Y~~P~~ls~~A~dLI~~lL~~~P~~Rpsl~~vL~h~Ff~~  274 (592)
T KOG0575|consen  227 ----------------------YNKIKLNEYSMPSHLSAEAKDLIRKLLRPNPSERPSLDEVLDHPFFKS  274 (592)
T ss_pred             ----------------------HHHHHhcCcccccccCHHHHHHHHHHhcCCcccCCCHHHHhcCHhhhC
Confidence                                  233444556678888999999999999999999999999999999943

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=1.2e-47  Score=351.78  Aligned_cols=285  Identities=31%  Similarity=0.467  Sum_probs=233.7

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH---hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ---FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~---~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      .+|...++||+|.||.||+|++..+++.||||.++....   ......+|+++|+.+      +|+||+.++++|-+.  
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel------~h~nIi~LiD~F~~~--   73 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQEL------KHPNIIELIDVFPHK--   73 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHc------cCcchhhhhhhccCC--
Confidence            579999999999999999999999999999998876542   255788999999999      899999999999865  


Q ss_pred             CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          113 NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       113 ~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                        ..+.+|+||+..+|..+++... ..++...++.++.+++.||+|||++ .|+|||+||.|+|+               
T Consensus        74 --~~l~lVfEfm~tdLe~vIkd~~-i~l~pa~iK~y~~m~LkGl~y~H~~-~IlHRDlKPnNLLi---------------  134 (318)
T KOG0659|consen   74 --SNLSLVFEFMPTDLEVVIKDKN-IILSPADIKSYMLMTLKGLAYCHSK-WILHRDLKPNNLLI---------------  134 (318)
T ss_pred             --CceEEEEEeccccHHHHhcccc-cccCHHHHHHHHHHHHHHHHHHHhh-hhhcccCCccceEE---------------
Confidence              6799999999999999886543 5689999999999999999999998 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---  269 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---  269 (447)
                                                                               ..++.+|++|||+++....+   
T Consensus       135 ---------------------------------------------------------s~~g~lKiADFGLAr~f~~p~~~  157 (318)
T KOG0659|consen  135 ---------------------------------------------------------SSDGQLKIADFGLARFFGSPNRI  157 (318)
T ss_pred             ---------------------------------------------------------cCCCcEEeecccchhccCCCCcc
Confidence                                                                     44678999999999866543   


Q ss_pred             cccCCCCCCccChHHhhcCC-CCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          270 FAEEIQTRQYRAPEVILRAG-YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~-~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      .+..+-|.+|+|||.++|.+ |+..+||||.|||++||+-|...|++.      ++.+++..+++.+|++.++.+.....
T Consensus       158 ~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~------sDidQL~~If~~LGTP~~~~WP~~~~  231 (318)
T KOG0659|consen  158 QTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGD------SDIDQLSKIFRALGTPTPDQWPEMTS  231 (318)
T ss_pred             cccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCC------chHHHHHHHHHHcCCCCcccCccccc
Confidence            33347899999999999974 899999999999999999998888877      69999999999999998765433333


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCCccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE  424 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~~~~  424 (447)
                      .-+|       ..+......++..       +-...++.+.||+.+||..||.+|+|++|+|+|+||+..-..+..
T Consensus       232 lpdY-------~~~~~~P~~~~~~-------lf~aas~d~ldLl~~m~~ynP~~Rita~qaL~~~yf~~~P~pt~~  293 (318)
T KOG0659|consen  232 LPDY-------VKIQQFPKPPLNN-------LFPAASSDALDLLSKMLTYNPKKRITASQALKHPYFKSLPLPTPP  293 (318)
T ss_pred             cccH-------HHHhcCCCCcccc-------ccccccHHHHHHHHhhhccCchhcccHHHHhcchhhhcCCCCCCh
Confidence            2222       1111111111111       222345566899999999999999999999999999975444433

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=5.3e-48  Score=359.72  Aligned_cols=283  Identities=26%  Similarity=0.449  Sum_probs=231.1

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|+...++|+|+||+||+|+++.||+.||||.+...+   ...+...+|+++|+.+      .|+|+|.++.+|...  
T Consensus         2 ekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqL------kH~NLVnLiEVFrrk--   73 (396)
T KOG0593|consen    2 EKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQL------KHENLVNLIEVFRRK--   73 (396)
T ss_pred             cHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhc------ccchHHHHHHHHHhc--
Confidence            46888899999999999999999999999999776543   3456788999999999      899999999999864  


Q ss_pred             CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          113 NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       113 ~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                        ..+++|+|||+.++.+.+.+.. .+++...++.+++|++.|+.|||++ ++|||||||+|||++              
T Consensus        74 --rklhLVFE~~dhTvL~eLe~~p-~G~~~~~vk~~l~Q~l~ai~~cHk~-n~IHRDIKPENILit--------------  135 (396)
T KOG0593|consen   74 --RKLHLVFEYCDHTVLHELERYP-NGVPSELVKKYLYQLLKAIHFCHKN-NCIHRDIKPENILIT--------------  135 (396)
T ss_pred             --ceeEEEeeecchHHHHHHHhcc-CCCCHHHHHHHHHHHHHHhhhhhhc-CeecccCChhheEEe--------------
Confidence              7899999999999888887655 5799999999999999999999997 999999999999994              


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc---cc
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQ  269 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~---~~  269 (447)
                                                                                ..+.+||||||+|....   ..
T Consensus       136 ----------------------------------------------------------~~gvvKLCDFGFAR~L~~pgd~  157 (396)
T KOG0593|consen  136 ----------------------------------------------------------QNGVVKLCDFGFARTLSAPGDN  157 (396)
T ss_pred             ----------------------------------------------------------cCCcEEeccchhhHhhcCCcch
Confidence                                                                      46789999999997654   33


Q ss_pred             cccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          270 FAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      -+.++-|.||+|||.+.+ ..|+..+||||+||++.+|++|...|++.      .+.+++-.|...+|.+..+-..    
T Consensus       158 YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~------SDiDQLy~I~ktLG~L~prhq~----  227 (396)
T KOG0593|consen  158 YTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGR------SDIDQLYLIRKTLGNLIPRHQS----  227 (396)
T ss_pred             hhhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCc------chHHHHHHHHHHHcccCHHHHH----
Confidence            456788999999999998 57999999999999999999999999998      4899999999999998876432    


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                         .|...+...-++.......+.. ..+  + ..++..+.||+.+||+.||++|++.+|+|.||||+...
T Consensus       228 ---iF~~N~~F~Gv~lP~~~~~epL-e~k--~-p~~s~~~ld~~k~cL~~dP~~R~sc~qll~H~yFd~~~  291 (396)
T KOG0593|consen  228 ---IFSSNPFFHGVRLPEPEHPEPL-ERK--Y-PKISNVLLDLLKKCLKMDPDDRLSCEQLLHHPYFDGFI  291 (396)
T ss_pred             ---HhccCCceeeeecCCCCCccch-hhh--c-ccchHHHHHHHHHHhcCCccccccHHHHhcChHHHHHH
Confidence               2222222211111111111111 111  1 23455788999999999999999999999999996543

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=2.6e-47  Score=359.32  Aligned_cols=284  Identities=28%  Similarity=0.416  Sum_probs=235.0

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH---hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ---FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~---~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      +.|+...+|++|+||.||+|+++.+++.||+|.++.+..   ..-...+|+.+|..+      +|+|||.+-.+....  
T Consensus        76 ~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~------~H~NIV~vkEVVvG~--  147 (419)
T KOG0663|consen   76 EEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKA------RHPNIVEVKEVVVGS--  147 (419)
T ss_pred             HHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhc------CCCCeeeeEEEEecc--
Confidence            459999999999999999999999999999998876543   233577899999999      799999999988765  


Q ss_pred             CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          113 NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       113 ~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      +-+.+|+|||||..+|.+++..-. +.|...+++.++.|++.|++|||.+ .|+|||+|+.|+|+               
T Consensus       148 ~~d~iy~VMe~~EhDLksl~d~m~-q~F~~~evK~L~~QlL~glk~lH~~-wilHRDLK~SNLLm---------------  210 (419)
T KOG0663|consen  148 NMDKIYIVMEYVEHDLKSLMETMK-QPFLPGEVKTLMLQLLRGLKHLHDN-WILHRDLKTSNLLL---------------  210 (419)
T ss_pred             ccceeeeeHHHHHhhHHHHHHhcc-CCCchHHHHHHHHHHHHHHHHHhhc-eeEecccchhheee---------------
Confidence            456799999999999999997654 5799999999999999999999997 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---  269 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---  269 (447)
                                                                               ...+.+|++|||+|..++.+   
T Consensus       211 ---------------------------------------------------------~~~G~lKiaDFGLAR~ygsp~k~  233 (419)
T KOG0663|consen  211 ---------------------------------------------------------SHKGILKIADFGLAREYGSPLKP  233 (419)
T ss_pred             ---------------------------------------------------------ccCCcEEecccchhhhhcCCccc
Confidence                                                                     44788999999999988877   


Q ss_pred             cccCCCCCCccChHHhhcCC-CCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          270 FAEEIQTRQYRAPEVILRAG-YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~-~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      .+..+-|.+|+|||.+.+.+ |++++||||+|||+.+++.+...|++.      ...+++..+++++|.+.+.++.+...
T Consensus       234 ~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~------sE~dQl~~If~llGtPte~iwpg~~~  307 (419)
T KOG0663|consen  234 YTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGK------SEIDQLDKIFKLLGTPSEAIWPGYSE  307 (419)
T ss_pred             CcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCC------chHHHHHHHHHHhCCCccccCCCccc
Confidence            44557799999999999875 899999999999999999999999988      58899999999999999887433222


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChh-hHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSET-DAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                      .. .+.    ........+.++...      |+.. .++...+|+..+|.+||.+|.||+|+|+|+||.+.
T Consensus       308 lp-~~k----~~~f~~~pyn~lr~k------F~~~~lse~g~~Lln~llt~dP~kR~tA~~~L~h~~F~e~  367 (419)
T KOG0663|consen  308 LP-AVK----KMTFSEHPYNNLRKK------FGALSLSEQGFDLLNKLLTYDPGKRITAEDGLKHEYFRET  367 (419)
T ss_pred             cc-hhh----ccccCCCCchhhhhh------ccccccchhHHHHHHHHhccCccccccHHHhhcccccccC
Confidence            11 000    001111122222222      2222 56788999999999999999999999999999984

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.8e-47  Score=362.13  Aligned_cols=295  Identities=29%  Similarity=0.481  Sum_probs=240.1

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEec---hhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc-c
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQK---SAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH-A  110 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~---~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~-~  110 (447)
                      ..+|...+.||.|+||.|+.|.+..+|+.||||.+.   ......+...+|+++|+.+      .|+||+.+.+.+.- .
T Consensus        21 ~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~------~HeNIi~l~di~~p~~   94 (359)
T KOG0660|consen   21 PRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHL------RHENIIGLLDIFRPPS   94 (359)
T ss_pred             cceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHh------cCCCcceEEeeccccc
Confidence            467777899999999999999999999999999765   2345577889999999999      78999999998876 2


Q ss_pred             CCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          111 GPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       111 ~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                      ......+|+|+|+|+.+|..++..+.  .++...+..+++|++.||+|+|+. +|+|||+||.|+++             
T Consensus        95 ~~~f~DvYiV~elMetDL~~iik~~~--~L~d~H~q~f~YQiLrgLKyiHSA-nViHRDLKPsNll~-------------  158 (359)
T KOG0660|consen   95 RDKFNDVYLVFELMETDLHQIIKSQQ--DLTDDHAQYFLYQILRGLKYIHSA-NVIHRDLKPSNLLL-------------  158 (359)
T ss_pred             ccccceeEEehhHHhhHHHHHHHcCc--cccHHHHHHHHHHHHHhcchhhcc-cccccccchhheee-------------
Confidence            23456899999999999999998654  389999999999999999999995 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc---
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---  267 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~---  267 (447)
                                                                                 +.++.+|++|||+|...+   
T Consensus       159 -----------------------------------------------------------n~~c~lKI~DFGLAR~~~~~~  179 (359)
T KOG0660|consen  159 -----------------------------------------------------------NADCDLKICDFGLARYLDKFF  179 (359)
T ss_pred             -----------------------------------------------------------ccCCCEEeccccceeeccccC
Confidence                                                                       446778999999998763   


Q ss_pred             --cccccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhh
Q 013220          268 --KQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  344 (447)
Q Consensus       268 --~~~~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (447)
                        ...+.++-|.+|+|||++.. ..|+.++||||+|||+++|++|+..|++.      ....++..+++++|+++++...
T Consensus       180 ~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~------d~v~Ql~lI~~~lGtP~~e~l~  253 (359)
T KOG0660|consen  180 EDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGK------DYVHQLQLILELLGTPSEEDLQ  253 (359)
T ss_pred             cccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCC------chHHHHHHHHHhcCCCCHHHHH
Confidence              34577899999999999875 47999999999999999999999999998      4889999999999999877542


Q ss_pred             CCC--CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCCc
Q 013220          345 GGA--QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR  422 (447)
Q Consensus       345 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~~  422 (447)
                      ...  +...|...-      +...-.++.++      ++ ..++.+.|||.+||.+||.+|+|++|+|+|||+..-+...
T Consensus       254 ~i~s~~ar~yi~sl------p~~p~~~f~~~------fp-~a~p~AidLlekmL~fdP~kRita~eAL~hPYl~~~hdp~  320 (359)
T KOG0660|consen  254 KIRSEKARPYIKSL------PQIPKQPFSSI------FP-NANPLAIDLLEKMLVFDPKKRITAEEALAHPYLAPYHDPE  320 (359)
T ss_pred             HhccHHHHHHHHhC------CCCCCCCHHHH------cC-CCCHHHHHHHHHHhccCccccCCHHHHhcChhhhhhcCCc
Confidence            211  111121111      11111122222      22 4466888999999999999999999999999999988777


Q ss_pred             ccccccC
Q 013220          423 DETKNKS  429 (447)
Q Consensus       423 ~~~~~~~  429 (447)
                      .+.-...
T Consensus       321 dEP~~~~  327 (359)
T KOG0660|consen  321 DEPVCQP  327 (359)
T ss_pred             cCCCCCC
Confidence            7664433

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-46  Score=360.11  Aligned_cols=264  Identities=28%  Similarity=0.421  Sum_probs=221.6

Q ss_pred             ccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH----hHHHHHHHHHHHHHhhcCCCCCcceeeeeccc
Q 013220           31 DLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ----FAQAALHEIEVLSAVADGDPSNEKCVIRLIDH  106 (447)
Q Consensus        31 ~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~----~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~  106 (447)
                      ...+-+.|++.+.||+|+||.|++++.+.+++.||+|++++...    ......+|..+|..+      +||.||+++-.
T Consensus        20 ~~~~~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v------~hPFiv~l~ys   93 (357)
T KOG0598|consen   20 EMVGPDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKI------KHPFIVKLIYS   93 (357)
T ss_pred             ccCChhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhC------CCCcEeeeEEe
Confidence            44555899999999999999999999999999999999887642    356788999999998      89999999999


Q ss_pred             ccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCC
Q 013220          107 FKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK  185 (447)
Q Consensus       107 ~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~  185 (447)
                      |++    ...+|+|+||+ ||.|+..+.+.  +.+++..++.++..|+.||.|||++ ||||||+||+|||+        
T Consensus        94 FQt----~~kLylVld~~~GGeLf~hL~~e--g~F~E~~arfYlaEi~lAL~~LH~~-gIiyRDlKPENILL--------  158 (357)
T KOG0598|consen   94 FQT----EEKLYLVLDYLNGGELFYHLQRE--GRFSEDRARFYLAEIVLALGYLHSK-GIIYRDLKPENILL--------  158 (357)
T ss_pred             ccc----CCeEEEEEeccCCccHHHHHHhc--CCcchhHHHHHHHHHHHHHHHHHhC-CeeeccCCHHHeee--------
Confidence            885    48999999999 89999999765  3499999999999999999999997 99999999999999        


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccc
Q 013220          186 DPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR  265 (447)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~  265 (447)
                                                                                      +..+.++|+|||+|+.
T Consensus       159 ----------------------------------------------------------------d~~GHi~LtDFgL~k~  174 (357)
T KOG0598|consen  159 ----------------------------------------------------------------DEQGHIKLTDFGLCKE  174 (357)
T ss_pred             ----------------------------------------------------------------cCCCcEEEeccccchh
Confidence                                                                            6689999999999973


Q ss_pred             c-c--cccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh
Q 013220          266 A-N--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  342 (447)
Q Consensus       266 ~-~--~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (447)
                      . .  .....+|||+.|+|||++.+.+|+.++|.|||||++|+|++|..||.+.+.      .    .+           
T Consensus       175 ~~~~~~~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~~~------~----~~-----------  233 (357)
T KOG0598|consen  175 DLKDGDATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAEDV------K----KM-----------  233 (357)
T ss_pred             cccCCCccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCccH------H----HH-----------
Confidence            2 2  233446999999999999999999999999999999999999999987641      1    11           


Q ss_pred             hhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCCh-hhHHHHHHHHhhccccCCCCCC----ChHHHhcCccccc
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSE-TDAREFAEFLVPLLDFTPEKRP----TAQQCLQHPWLSL  417 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~~~L~~dP~kRp----ta~elL~hp~f~~  417 (447)
                                                 .+.+...+...++ -.+.++++||+++|+.||++|.    .+.++-+||||..
T Consensus       234 ---------------------------~~~I~~~k~~~~p~~ls~~ardll~~LL~rdp~~RLg~~~d~~~ik~HpfF~~  286 (357)
T KOG0598|consen  234 ---------------------------YDKILKGKLPLPPGYLSEEARDLLKKLLKRDPRQRLGGPGDAEEIKRHPFFKG  286 (357)
T ss_pred             ---------------------------HHHHhcCcCCCCCccCCHHHHHHHHHHhccCHHHhcCCCCChHHhhcCccccc
Confidence                                       1222222322233 3678999999999999999996    6899999999998


Q ss_pred             ccCCcccccc
Q 013220          418 RNSTRDETKN  427 (447)
Q Consensus       418 ~~~~~~~~~~  427 (447)
                      .+=.....+.
T Consensus       287 inW~~l~~k~  296 (357)
T KOG0598|consen  287 INWEKLLAKK  296 (357)
T ss_pred             CCHHHHHhcC
Confidence            8644444333

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=2e-46  Score=372.60  Aligned_cols=253  Identities=28%  Similarity=0.425  Sum_probs=221.7

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH----hHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ----FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~----~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      -.+|.+.+.||+|+|++|++|+++.+++.||||++.++-.    ....+..|-++|..|.     +||+|++++-.|.+.
T Consensus        72 ~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~-----~hPgivkLy~TFQD~  146 (604)
T KOG0592|consen   72 PNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLS-----GHPGIVKLYFTFQDE  146 (604)
T ss_pred             hhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhh-----CCCCeEEEEEEeecc
Confidence            3679999999999999999999999999999998776532    2446778999999997     899999999999965


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                          ..+|+|+||+ +|+|.+++...  ..|++..++.++.+|+.||+|||++ |||||||||+|||+            
T Consensus       147 ----~sLYFvLe~A~nGdll~~i~K~--Gsfde~caR~YAAeIldAleylH~~-GIIHRDlKPENILL------------  207 (604)
T KOG0592|consen  147 ----ESLYFVLEYAPNGDLLDLIKKY--GSFDETCARFYAAEILDALEYLHSN-GIIHRDLKPENILL------------  207 (604)
T ss_pred             ----cceEEEEEecCCCcHHHHHHHh--CcchHHHHHHHHHHHHHHHHHHHhc-CceeccCChhheeE------------
Confidence                7899999999 99999999855  4599999999999999999999996 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc-
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-  268 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~-  268 (447)
                                                                                  +.+++++|.|||.|+.+.. 
T Consensus       208 ------------------------------------------------------------d~dmhikITDFGsAK~l~~~  227 (604)
T KOG0592|consen  208 ------------------------------------------------------------DKDGHIKITDFGSAKILSPS  227 (604)
T ss_pred             ------------------------------------------------------------cCCCcEEEeeccccccCChh
Confidence                                                                        7789999999999975431 


Q ss_pred             ---------------ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHH
Q 013220          269 ---------------QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMME  333 (447)
Q Consensus       269 ---------------~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~  333 (447)
                                     ....+|||-.|++||++.....+..+|||+||||+|+|++|.+||.+..      +...      
T Consensus       228 ~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~N------eyli------  295 (604)
T KOG0592|consen  228 QKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAAN------EYLI------  295 (604)
T ss_pred             hccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCcccc------HHHH------
Confidence                           1244789999999999999999999999999999999999999998763      2222      


Q ss_pred             HhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCc
Q 013220          334 LIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP  413 (447)
Q Consensus       334 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp  413 (447)
                                                          +.+++.-.+.++...++.++||+.++|..||.+|+|++||-+||
T Consensus       296 ------------------------------------FqkI~~l~y~fp~~fp~~a~dLv~KLLv~dp~~Rlt~~qIk~Hp  339 (604)
T KOG0592|consen  296 ------------------------------------FQKIQALDYEFPEGFPEDARDLIKKLLVRDPSDRLTSQQIKAHP  339 (604)
T ss_pred             ------------------------------------HHHHHHhcccCCCCCCHHHHHHHHHHHccCccccccHHHHhhCc
Confidence                                                44455556677888889999999999999999999999999999


Q ss_pred             cccccc
Q 013220          414 WLSLRN  419 (447)
Q Consensus       414 ~f~~~~  419 (447)
                      ||...+
T Consensus       340 FF~~Vd  345 (604)
T KOG0592|consen  340 FFEGVD  345 (604)
T ss_pred             ccccCC
Confidence            998774

>PTZ00284 protein kinase; Provisional

Probab=100.00  E-value=4e-45  Score=380.75  Aligned_cols=330  Identities=28%  Similarity=0.490  Sum_probs=244.8

Q ss_pred             CCCCccccccCcccc--CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCc
Q 013220           20 RKGGYHAVRVGDLFN--GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNE   97 (447)
Q Consensus        20 ~~~~~~~~~~g~~~~--~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~   97 (447)
                      ...++.++.+|+.+.  .++|++.++||+|+||+||+|.+..+++.||||+++...........|+++++.+.+.+..+|
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~~~~~~~~~e~~~l~~l~~~~~~~~  190 (467)
T PTZ00284        111 REEGHFYVVLGEDIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPKYTRDAKIEIQFMEKVRQADPADR  190 (467)
T ss_pred             CCCCceeEecCCccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecchhhHHHHHHHHHHHHHHhhcCcccC
Confidence            344566777777553  479999999999999999999999999999999987655555667889999999988877788


Q ss_pred             ceeeeecccccccCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEe
Q 013220           98 KCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL  177 (447)
Q Consensus        98 ~~Iv~~~~~~~~~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill  177 (447)
                      .++++++.+|...   ..+.|+|||+++++|.+.+...  ..+++..+..++.||+.||+|||++.|||||||||+|||+
T Consensus       191 ~~i~~i~~~~~~~---~~~~~iv~~~~g~~l~~~l~~~--~~l~~~~~~~i~~qi~~aL~yLH~~~gIiHrDlKP~NILl  265 (467)
T PTZ00284        191 FPLMKIQRYFQNE---TGHMCIVMPKYGPCLLDWIMKH--GPFSHRHLAQIIFQTGVALDYFHTELHLMHTDLKPENILM  265 (467)
T ss_pred             cceeeeEEEEEcC---CceEEEEEeccCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEE
Confidence            8899999888653   3589999999999998887643  3589999999999999999999973499999999999999


Q ss_pred             eecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeE
Q 013220          178 VSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKV  257 (447)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL  257 (447)
                      ......    +.+.                                                    .........+.+||
T Consensus       266 ~~~~~~----~~~~----------------------------------------------------~~~~~~~~~~~vkl  289 (467)
T PTZ00284        266 ETSDTV----VDPV----------------------------------------------------TNRALPPDPCRVRI  289 (467)
T ss_pred             ecCCcc----cccc----------------------------------------------------cccccCCCCceEEE
Confidence            542100    0000                                                    00000012356999


Q ss_pred             eecCcccccccccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCC
Q 013220          258 VDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK  337 (447)
Q Consensus       258 ~Dfg~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~  337 (447)
                      +|||.+..........+||+.|+|||++.+..|+.++|||||||++|+|++|+.||...      .....+..+.+.+|.
T Consensus       290 ~DfG~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~------~~~~~~~~i~~~~g~  363 (467)
T PTZ00284        290 CDLGGCCDERHSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTH------DNLEHLHLMEKTLGR  363 (467)
T ss_pred             CCCCccccCccccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCCC------ChHHHHHHHHHHcCC
Confidence            99999876555556678999999999999999999999999999999999999999765      466777888899999


Q ss_pred             CCHHhhhCCC--CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          338 MPRKIAIGGA--QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       338 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      +|..|.....  ...+++...+.......  ...+.................+.|||.+||++||++|||++|+|+||||
T Consensus       364 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~ta~e~L~Hp~~  441 (467)
T PTZ00284        364 LPSEWAGRCGTEEARLLYNSAGQLRPCTD--PKHLARIARARPVREVIRDDLLCDLIYGLLHYDRQKRLNARQMTTHPYV  441 (467)
T ss_pred             CCHHHHhhccchhHHHHhhhcccccccCC--HHHHHhhhcccchhhhhchHHHHHHHHHhCCcChhhCCCHHHHhcCccc
Confidence            9988754321  11223332222110000  0000011000000000124568899999999999999999999999999


Q ss_pred             ccc
Q 013220          416 SLR  418 (447)
Q Consensus       416 ~~~  418 (447)
                      ...
T Consensus       442 ~~~  444 (467)
T PTZ00284        442 LKY  444 (467)
T ss_pred             ccc
Confidence            864

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.4e-46  Score=367.36  Aligned_cols=281  Identities=25%  Similarity=0.395  Sum_probs=230.7

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ..|+.+++||+|+||.||+|++..+++.||+|.+..+   ..+.....+||.+|++|      +|+||+++.+.....  
T Consensus       117 ~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l------~HpNIikL~eivt~~--  188 (560)
T KOG0600|consen  117 DSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRL------DHPNIIKLEEIVTSK--  188 (560)
T ss_pred             HHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhc------CCCcccceeeEEEec--
Confidence            4589999999999999999999999999999976644   45667889999999999      899999999988765  


Q ss_pred             CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          113 NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       113 ~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      ....+|||+|||..+|.-++... .-.|++.+++.+|+|++.||+|||.+ ||+|||||..|||+               
T Consensus       189 ~~~siYlVFeYMdhDL~GLl~~p-~vkft~~qIKc~mkQLl~Gl~~cH~~-gvlHRDIK~SNiLi---------------  251 (560)
T KOG0600|consen  189 LSGSIYLVFEYMDHDLSGLLSSP-GVKFTEPQIKCYMKQLLEGLEYCHSR-GVLHRDIKGSNILI---------------  251 (560)
T ss_pred             CCceEEEEEecccchhhhhhcCC-CcccChHHHHHHHHHHHHHHHHHhhc-CeeeccccccceEE---------------
Confidence            34589999999999999888642 24599999999999999999999997 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc----c
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN----K  268 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~----~  268 (447)
                                                                               +..+.+||+|||+|..+.    .
T Consensus       252 ---------------------------------------------------------dn~G~LKiaDFGLAr~y~~~~~~  274 (560)
T KOG0600|consen  252 ---------------------------------------------------------DNNGVLKIADFGLARFYTPSGSA  274 (560)
T ss_pred             ---------------------------------------------------------cCCCCEEeccccceeeccCCCCc
Confidence                                                                     668899999999997544    2


Q ss_pred             ccccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          269 QFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       269 ~~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                      +.+..+-|.||+|||.+.|. .|+.++|+||+||||.+|+.|+..|.+.      ++..++..|++++|.+.+.++. ..
T Consensus       275 ~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~------tEveQl~kIfklcGSP~e~~W~-~~  347 (560)
T KOG0600|consen  275 PYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGR------TEVEQLHKIFKLCGSPTEDYWP-VS  347 (560)
T ss_pred             ccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCc------cHHHHHHHHHHHhCCCChhccc-cc
Confidence            35667889999999999986 6999999999999999999999999988      6899999999999999987743 11


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccc
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~  417 (447)
                      +. +.+..-        .........+.+..   ...+....+|+..||..||++|.||.++|.|+||+.
T Consensus       348 kL-P~~~~~--------kp~~~y~r~l~E~~---~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~seyF~t  405 (560)
T KOG0600|consen  348 KL-PHATIF--------KPQQPYKRRLRETF---KDFPASALDLLEKLLSLDPDKRGTASSALQSEYFTT  405 (560)
T ss_pred             cC-Cccccc--------CCCCcccchHHHHh---ccCCHHHHHHHHHHhccCccccccHHHHhcCccccc
Confidence            11 111000        00011112222221   223567889999999999999999999999999954

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-45  Score=369.44  Aligned_cols=251  Identities=28%  Similarity=0.472  Sum_probs=213.7

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh-----H-HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA-----A-QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~-----~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      .++|.+.+.||+|+||+|++|++..++..||+|++...     . .....+.+|+.+++.+.     .||||++++.++.
T Consensus        16 ~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~-----~HpnI~~l~ev~~   90 (370)
T KOG0583|consen   16 IGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLR-----SHPNIIRLLEVFA   90 (370)
T ss_pred             cCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhc-----cCCCEeEEEEEEe
Confidence            37999999999999999999999999999999976653     1 23456778999999994     4999999999998


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCc
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                      ..    ..+|+||||| ||+|++.+...  ..+.+..++.+|+|++.|++|||++ ||+||||||+||++.         
T Consensus        91 t~----~~~~ivmEy~~gGdL~~~i~~~--g~l~E~~ar~~F~Qlisav~y~H~~-gi~HRDLK~ENilld---------  154 (370)
T KOG0583|consen   91 TP----TKIYIVMEYCSGGDLFDYIVNK--GRLKEDEARKYFRQLISAVAYCHSR-GIVHRDLKPENILLD---------  154 (370)
T ss_pred             cC----CeEEEEEEecCCccHHHHHHHc--CCCChHHHHHHHHHHHHHHHHHHhC-CEeeCCCCHHHEEec---------
Confidence            65    5699999999 88999999862  4589999999999999999999996 999999999999993         


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcc-cceeEeecCccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGID-MRCKVVDFGNACRA  266 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~kL~Dfg~a~~~  266 (447)
                                                                                     .. .++||+|||++...
T Consensus       155 ---------------------------------------------------------------~~~~~~Kl~DFG~s~~~  171 (370)
T KOG0583|consen  155 ---------------------------------------------------------------GNEGNLKLSDFGLSAIS  171 (370)
T ss_pred             ---------------------------------------------------------------CCCCCEEEecccccccc
Confidence                                                                           34 78999999999866


Q ss_pred             ---ccccccCCCCCCccChHHhhcCC-CC-ccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          267 ---NKQFAEEIQTRQYRAPEVILRAG-YS-FSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       267 ---~~~~~~~~gt~~y~aPE~l~~~~-~~-~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                         .......+||+.|+|||++.+.. |+ .++||||+||+||.|++|++||....          ...+.         
T Consensus       172 ~~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~----------~~~l~---------  232 (370)
T KOG0583|consen  172 PGEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSN----------VPNLY---------  232 (370)
T ss_pred             CCCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCcc----------HHHHH---------
Confidence               34556779999999999999977 85 88999999999999999999997532          11111         


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhh-HHHHHHHHhhccccCCCCCCChHHHhcCccccc
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETD-AREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~  417 (447)
                                                   ..+......+|.-+ +.++.+||++||..||.+|+|+.++++||||+.
T Consensus       233 -----------------------------~ki~~~~~~~p~~~~S~~~~~Li~~mL~~~P~~R~t~~~i~~h~w~~~  280 (370)
T KOG0583|consen  233 -----------------------------RKIRKGEFKIPSYLLSPEARSLIEKMLVPDPSTRITLLEILEHPWFQK  280 (370)
T ss_pred             -----------------------------HHHhcCCccCCCCcCCHHHHHHHHHHcCCCcccCCCHHHHhhChhhcc
Confidence                                         11333344566666 889999999999999999999999999999997

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9.6e-46  Score=370.35  Aligned_cols=255  Identities=29%  Similarity=0.498  Sum_probs=216.2

Q ss_pred             CccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHh-HHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           30 GDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQF-AQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        30 g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~-~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      ||-.  ..|...++||+|+.|.||.|+...+++.||||.+...... .+-+.+|+.+|+.+      .|+|||++++.|.
T Consensus       269 ~dP~--~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~------~H~NiVnfl~Syl  340 (550)
T KOG0578|consen  269 GDPR--SKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDL------HHPNIVNFLDSYL  340 (550)
T ss_pred             CChh--hhhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhc------cchHHHHHHHHhc
Confidence            5554  5799999999999999999999999999999987665543 35688999999999      8999999999988


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCc
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                      ..    +.+|+||||| |++|.+++....   ++|.++..+++.++.||+|||.+ ||+|||||.+|||++         
T Consensus       341 v~----deLWVVMEym~ggsLTDvVt~~~---~~E~qIA~Icre~l~aL~fLH~~-gIiHrDIKSDnILL~---------  403 (550)
T KOG0578|consen  341 VG----DELWVVMEYMEGGSLTDVVTKTR---MTEGQIAAICREILQGLKFLHAR-GIIHRDIKSDNILLT---------  403 (550)
T ss_pred             cc----ceeEEEEeecCCCchhhhhhccc---ccHHHHHHHHHHHHHHHHHHHhc-ceeeeccccceeEec---------
Confidence            64    7899999999 889988886543   89999999999999999999997 999999999999994         


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                     ..+++||+|||+|..+.
T Consensus       404 ---------------------------------------------------------------~~g~vKltDFGFcaqi~  420 (550)
T KOG0578|consen  404 ---------------------------------------------------------------MDGSVKLTDFGFCAQIS  420 (550)
T ss_pred             ---------------------------------------------------------------cCCcEEEeeeeeeeccc
Confidence                                                                           46779999999997655


Q ss_pred             cc---cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhh
Q 013220          268 KQ---FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  344 (447)
Q Consensus       268 ~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (447)
                      ..   ....+||++|||||++.+..|++++||||||+++++|+.|..||...+       ....-.++...|.+.     
T Consensus       421 ~~~~KR~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~-------PlrAlyLIa~ng~P~-----  488 (550)
T KOG0578|consen  421 EEQSKRSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNEN-------PLRALYLIATNGTPK-----  488 (550)
T ss_pred             cccCccccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCCC-------hHHHHHHHhhcCCCC-----
Confidence            33   345689999999999999999999999999999999999999997542       222223333333322     


Q ss_pred             CCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccc
Q 013220          345 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~  417 (447)
                                                       ...+..++.+|++||.+||+.||++|++|+|+|+||||+.
T Consensus       489 ---------------------------------lk~~~klS~~~kdFL~~cL~~dv~~RasA~eLL~HpFl~~  528 (550)
T KOG0578|consen  489 ---------------------------------LKNPEKLSPELKDFLDRCLVVDVEQRASAKELLEHPFLKM  528 (550)
T ss_pred             ---------------------------------cCCccccCHHHHHHHHHHhhcchhcCCCHHHHhcChhhhh
Confidence                                             1245667889999999999999999999999999999964

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=6e-45  Score=351.96  Aligned_cols=260  Identities=26%  Similarity=0.434  Sum_probs=211.6

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|.+.++||+|+||+||+|+++.++..||||.+...   ....+-+..|+.+|+.+      +|+|||.++++....  
T Consensus        10 ~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel------~H~nIV~l~d~~~~~--   81 (429)
T KOG0595|consen   10 GDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKEL------KHPNIVRLLDCIEDD--   81 (429)
T ss_pred             ccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhc------CCcceeeEEEEEecC--
Confidence            6899999999999999999999999999999976544   45566788999999999      899999999999854  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                        +.+|+||||| ||+|..++...  ..+++..++.++.|++.||++||++ +||||||||+|||++.....        
T Consensus        82 --~~i~lVMEyC~gGDLs~yi~~~--~~l~e~t~r~Fm~QLA~alq~L~~~-~IiHRDLKPQNiLLs~~~~~--------  148 (429)
T KOG0595|consen   82 --DFIYLVMEYCNGGDLSDYIRRR--GRLPEATARHFMQQLASALQFLHEN-NIIHRDLKPQNILLSTTARN--------  148 (429)
T ss_pred             --CeEEEEEEeCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeeccCCcceEEeccCCCC--------
Confidence              7999999999 89999999754  3599999999999999999999998 99999999999999653110        


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc--c
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--Q  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~--~  269 (447)
                                                                                +....+||+|||+|.....  .
T Consensus       149 ----------------------------------------------------------~~~~~LKIADFGfAR~L~~~~~  170 (429)
T KOG0595|consen  149 ----------------------------------------------------------DTSPVLKIADFGFARFLQPGSM  170 (429)
T ss_pred             ----------------------------------------------------------CCCceEEecccchhhhCCchhH
Confidence                                                                      1115689999999976543  3


Q ss_pred             cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          270 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      ....||++.|||||++....|+.|+|+||+|+++|++++|+.||...+..+      ....+.    +..          
T Consensus       171 a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~t~~e------L~~~~~----k~~----------  230 (429)
T KOG0595|consen  171 AETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDAETPKE------LLLYIK----KGN----------  230 (429)
T ss_pred             HHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCccccCHHH------HHHHHh----ccc----------
Confidence            455699999999999999999999999999999999999999997653111      100000    000          


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                               ...+..+...+..+.+++...|+.+|..|.+..+-+.|+++...-
T Consensus       231 -------------------------~~~~~~~~~~s~~~~~Ll~~ll~~~~~~~~~~~~~~~~~~l~~~p  275 (429)
T KOG0595|consen  231 -------------------------EIVPVLPAELSNPLRELLISLLQRNPKDRISFEDFFDHPFLAANP  275 (429)
T ss_pred             -------------------------cccCchhhhccCchhhhhhHHHhcCccccCchHHhhhhhhcccCc
Confidence                                     001113344456677899999999999999999999999988643

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.5e-45  Score=352.38  Aligned_cols=287  Identities=28%  Similarity=0.436  Sum_probs=233.1

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC-cc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN-GQ  115 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~-~~  115 (447)
                      +|.-.+.+|.|+||.||+|....+++.||||....+.+   .-.+|+++|+++      .|||||++.-+|.....+ .-
T Consensus        25 ~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r---~knrEl~im~~l------~HpNIV~L~~~f~~~~~~d~~   95 (364)
T KOG0658|consen   25 SYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKR---YKNRELQIMRKL------DHPNIVRLLYFFSSSTESDEV   95 (364)
T ss_pred             EEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCC---cCcHHHHHHHhc------CCcCeeeEEEEEEecCCCchh
Confidence            49999999999999999999999999999996554433   457799999988      899999999999887666 34


Q ss_pred             eEEEEEecccccHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          116 HLCMVLEFLGDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       116 ~~~lvmE~~~~~L~~~~~~~--~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ++.+||||+..+|++.++..  ....++.-.++.+.+||+.||+|||+. ||+||||||.|+|++.              
T Consensus        96 ~lnlVleymP~tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~-~IcHRDIKPqNlLvD~--------------  160 (364)
T KOG0658|consen   96 YLNLVLEYMPETLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSH-GICHRDIKPQNLLVDP--------------  160 (364)
T ss_pred             HHHHHHHhchHHHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhc-CcccCCCChheEEEcC--------------
Confidence            88999999999999998753  234588889999999999999999995 9999999999999943              


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc--cccc
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQFA  271 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~--~~~~  271 (447)
                                                                               ..+.+||||||.|+...  .+-.
T Consensus       161 ---------------------------------------------------------~tg~LKicDFGSAK~L~~~epni  183 (364)
T KOG0658|consen  161 ---------------------------------------------------------DTGVLKICDFGSAKVLVKGEPNI  183 (364)
T ss_pred             ---------------------------------------------------------CCCeEEeccCCcceeeccCCCce
Confidence                                                                     25789999999998654  3334


Q ss_pred             cCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          272 EEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       272 ~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      .+..|.+|+|||.+.+. .|+.+.||||.|||++||+.|+..|++.      +..+++..+.+++|.+..+-....+..-
T Consensus       184 SYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~------s~~dQL~eIik~lG~Pt~e~I~~mn~~y  257 (364)
T KOG0658|consen  184 SYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGD------SSVDQLVEIIKVLGTPTREDIKSMNPNY  257 (364)
T ss_pred             eEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCC------CHHHHHHHHHHHhCCCCHHHHhhcCccc
Confidence            56789999999999986 5999999999999999999999999997      5889999999999999976543333221


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCCcc
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRD  423 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~~~  423 (447)
                      .-            ..++......+.+ -+....+++..+|+.++|+.+|.+|.++.|+|.||||++-+....
T Consensus       258 ~~------------~~~p~ik~~~~~~-~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~h~fFdelr~~~~  317 (364)
T KOG0658|consen  258 TE------------FKFPQIKAHPWHK-VFFKRLPPDALDLLSKLLQYSPSKRLSALEALAHPFFDELRDPNT  317 (364)
T ss_pred             cc------------ccCccccccccee-ecccCCCHHHHHHHHHHhccChhhcCCHHHHhcchhhHHhhCcCc
Confidence            10            0111111111111 134456778999999999999999999999999999998776533

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9.4e-45  Score=369.77  Aligned_cols=262  Identities=25%  Similarity=0.411  Sum_probs=229.1

Q ss_pred             cccccCc-cccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcce
Q 013220           25 HAVRVGD-LFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKC   99 (447)
Q Consensus        25 ~~~~~g~-~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~   99 (447)
                      ...+.+. .++-++|.+++.||+|+||.|++|..+.+++.||||+++++.    +..+....|-+++....     .||.
T Consensus       356 ~~~~~~~~~~~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~-----~HPF  430 (694)
T KOG0694|consen  356 PEFPPRRGPLTLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELAN-----RHPF  430 (694)
T ss_pred             ccCCCCCCcccccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhc-----cCCe
Confidence            3445555 777799999999999999999999999999999999999875    44667888999999986     7999


Q ss_pred             eeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEee
Q 013220          100 VIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV  178 (447)
Q Consensus       100 Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~  178 (447)
                      ++.++.+|..    ..++|+||||+ ||++....   ....+++..++.+++.|+.||.|||++ |||+||||.+|||+ 
T Consensus       431 L~~L~~~fQT----~~~l~fvmey~~Ggdm~~~~---~~~~F~e~rarfyaAev~l~L~fLH~~-~IIYRDlKLdNiLL-  501 (694)
T KOG0694|consen  431 LVNLFSCFQT----KEHLFFVMEYVAGGDLMHHI---HTDVFSEPRARFYAAEVVLGLQFLHEN-GIIYRDLKLDNLLL-  501 (694)
T ss_pred             Eeeccccccc----CCeEEEEEEecCCCcEEEEE---ecccccHHHHHHHHHHHHHHHHHHHhc-CceeeecchhheEE-
Confidence            9999999984    58999999999 77733222   334599999999999999999999998 99999999999999 


Q ss_pred             ecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEe
Q 013220          179 STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVV  258 (447)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~  258 (447)
                                                                                             +.++.+||+
T Consensus       502 -----------------------------------------------------------------------D~eGh~kiA  510 (694)
T KOG0694|consen  502 -----------------------------------------------------------------------DTEGHVKIA  510 (694)
T ss_pred             -----------------------------------------------------------------------cccCcEEec
Confidence                                                                                   668999999


Q ss_pred             ecCccccc---ccccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHh
Q 013220          259 DFGNACRA---NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI  335 (447)
Q Consensus       259 Dfg~a~~~---~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~  335 (447)
                      |||+++..   +...+.+|||+.|+|||++.+..|+.++|.|||||+||+|+.|+.||.+.+..+               
T Consensus       511 DFGlcKe~m~~g~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddEee---------------  575 (694)
T KOG0694|consen  511 DFGLCKEGMGQGDRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDEEE---------------  575 (694)
T ss_pred             ccccccccCCCCCccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCCHHH---------------
Confidence            99999742   345567899999999999999999999999999999999999999999875211               


Q ss_pred             CCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCC-----hHHHh
Q 013220          336 GKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCL  410 (447)
Q Consensus       336 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpt-----a~elL  410 (447)
                                                       -++.|+...+.+|.-.+.++.++++++|+.||++|.-     ++++.
T Consensus       576 ---------------------------------~FdsI~~d~~~yP~~ls~ea~~il~~ll~k~p~kRLG~~e~d~~~i~  622 (694)
T KOG0694|consen  576 ---------------------------------VFDSIVNDEVRYPRFLSKEAIAIMRRLLRKNPEKRLGSGERDAEDIK  622 (694)
T ss_pred             ---------------------------------HHHHHhcCCCCCCCcccHHHHHHHHHHhccCcccccCCCCCCchhhh
Confidence                                             1567778888899999999999999999999999984     68999


Q ss_pred             cCccccccc
Q 013220          411 QHPWLSLRN  419 (447)
Q Consensus       411 ~hp~f~~~~  419 (447)
                      .||||+.++
T Consensus       623 ~hpFFr~i~  631 (694)
T KOG0694|consen  623 KHPFFRSID  631 (694)
T ss_pred             hCCccccCC
Confidence            999999875

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=1e-44  Score=337.06  Aligned_cols=257  Identities=28%  Similarity=0.446  Sum_probs=227.9

Q ss_pred             CccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecc
Q 013220           30 GDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLID  105 (447)
Q Consensus        30 g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~  105 (447)
                      +...+-++|+..+.||.|+||.|-+++++.++..||+|++....    ...++..+|..+|+.+      .||.++++++
T Consensus        38 ~~~~~l~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v------~~PFlv~l~~  111 (355)
T KOG0616|consen   38 QNPYSLQDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAV------SHPFLVKLYG  111 (355)
T ss_pred             CCCcchhhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhc------cCceeEEEEE
Confidence            44344588999999999999999999999999999999988764    4567889999999999      8999999999


Q ss_pred             cccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCC
Q 013220          106 HFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       106 ~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~  184 (447)
                      .|.+.    ..+|+||||+ ||.|++.+.+.  +.+++..++.++.||+.||+|||+. +|++||+||+|||+       
T Consensus       112 t~~d~----~~lymvmeyv~GGElFS~Lrk~--~rF~e~~arFYAAeivlAleylH~~-~iiYRDLKPENiLl-------  177 (355)
T KOG0616|consen  112 TFKDN----SNLYMVMEYVPGGELFSYLRKS--GRFSEPHARFYAAEIVLALEYLHSL-DIIYRDLKPENLLL-------  177 (355)
T ss_pred             eeccC----CeEEEEEeccCCccHHHHHHhc--CCCCchhHHHHHHHHHHHHHHHHhc-CeeeccCChHHeee-------
Confidence            99865    7999999999 89999998754  3499999999999999999999996 99999999999999       


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                       +..+.+|++|||+|+
T Consensus       178 -----------------------------------------------------------------D~~G~iKitDFGFAK  192 (355)
T KOG0616|consen  178 -----------------------------------------------------------------DQNGHIKITDFGFAK  192 (355)
T ss_pred             -----------------------------------------------------------------ccCCcEEEEeccceE
Confidence                                                                             668999999999999


Q ss_pred             ccccccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhh
Q 013220          265 RANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  344 (447)
Q Consensus       265 ~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (447)
                      ......-..|||+.|+|||++...+|+.++|.|||||++|+|+.|..||.+...         ++               
T Consensus       193 ~v~~rT~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~---------~~---------------  248 (355)
T KOG0616|consen  193 RVSGRTWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNP---------IQ---------------  248 (355)
T ss_pred             EecCcEEEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCCh---------HH---------------
Confidence            888776667999999999999999999999999999999999999999987631         00               


Q ss_pred             CCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC-----ChHHHhcCccccccc
Q 013220          345 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRN  419 (447)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp-----ta~elL~hp~f~~~~  419 (447)
                                              ..+.|+..+..+|+-.+.++++||+++|+.|-.+|.     -..++-+||||+...
T Consensus       249 ------------------------iY~KI~~~~v~fP~~fs~~~kdLl~~LL~vD~t~R~gnlknG~~dIk~H~wF~~v~  304 (355)
T KOG0616|consen  249 ------------------------IYEKILEGKVKFPSYFSSDAKDLLKKLLQVDLTKRFGNLKNGVEDIKNHPWFKGVD  304 (355)
T ss_pred             ------------------------HHHHHHhCcccCCcccCHHHHHHHHHHHhhhhHhhhcCcCCCccccccCccccccc
Confidence                                    135566777788998999999999999999999993     467999999999763

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-46  Score=340.77  Aligned_cols=255  Identities=27%  Similarity=0.442  Sum_probs=214.9

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      .++|.+.+.||+|.|+.|++|.+..+|+.||+|++....   ..-+.+.+|+++.++|      .||||+++.+.+... 
T Consensus        10 ~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~L------qHP~IvrL~~ti~~~-   82 (355)
T KOG0033|consen   10 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKL------QHPNIVRLHDSIQEE-   82 (355)
T ss_pred             chhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhc------CCCcEeehhhhhccc-
Confidence            478999999999999999999999999999999876543   4556788999999999      899999999988753 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                         ...|+|+|+| |++|...+.....  +++..+-.+++||++||.|||.+ ||||||+||+|.++-..          
T Consensus        83 ---~~~ylvFe~m~G~dl~~eIV~R~~--ySEa~aSH~~rQiLeal~yCH~n-~IvHRDvkP~nllLASK----------  146 (355)
T KOG0033|consen   83 ---SFHYLVFDLVTGGELFEDIVAREF--YSEADASHCIQQILEALAYCHSN-GIVHRDLKPENLLLASK----------  146 (355)
T ss_pred             ---ceeEEEEecccchHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhc-CceeccCChhheeeeec----------
Confidence               6899999999 8888877765543  78999999999999999999997 99999999999999442          


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc--c
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--K  268 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~--~  268 (447)
                                                                                 +...-+||+|||+++...  .
T Consensus       147 -----------------------------------------------------------~~~A~vKL~~FGvAi~l~~g~  167 (355)
T KOG0033|consen  147 -----------------------------------------------------------AKGAAVKLADFGLAIEVNDGE  167 (355)
T ss_pred             -----------------------------------------------------------cCCCceeecccceEEEeCCcc
Confidence                                                                       334568999999998655  3


Q ss_pred             ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          269 QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       269 ~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      ....++|||.|+|||++...+|+..+|||+.|||+|-|+.|++||.+.+.+      ...                    
T Consensus       168 ~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~~------rly--------------------  221 (355)
T KOG0033|consen  168 AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQH------RLY--------------------  221 (355)
T ss_pred             ccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCccHH------HHH--------------------
Confidence            456679999999999999999999999999999999999999999876422      111                    


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCC----hhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFS----ETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                            +++....++++    +.+++++++|+++||..||.+|+|+.|+|+|||+.++.
T Consensus       222 ----------------------e~I~~g~yd~~~~~w~~is~~Ak~LvrrML~~dP~kRIta~EAL~HpWi~~r~  274 (355)
T KOG0033|consen  222 ----------------------EQIKAGAYDYPSPEWDTVTPEAKSLIRRMLTVNPKKRITADEALKHPWICNRE  274 (355)
T ss_pred             ----------------------HHHhccccCCCCcccCcCCHHHHHHHHHHhccChhhhccHHHHhCCchhcchH
Confidence                                  22222222222    35688999999999999999999999999999999864

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7e-44  Score=347.17  Aligned_cols=268  Identities=32%  Similarity=0.488  Sum_probs=220.3

Q ss_pred             ccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH--hHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           33 FNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ--FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        33 ~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~--~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      ++.+.|.+.+.||.|..++||+|+...+++.||||++..+.-  ..+.+.+|+..+..+      +||||++++-+|...
T Consensus        23 ~n~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~------~HPNIv~~~~sFvv~   96 (516)
T KOG0582|consen   23 LNAKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLI------DHPNIVTYHCSFVVD   96 (516)
T ss_pred             CCccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhc------CCCCcceEEEEEEec
Confidence            445889999999999999999999999999999999876642  356888999999998      899999999999964


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                          +.+|+||.|| +|++++++......+++|..+..+.++++.||.|||++ |-||||||+.|||+            
T Consensus        97 ----~~LWvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~-G~IHRdvKAgnILi------------  159 (516)
T KOG0582|consen   97 ----SELWVVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQN-GHIHRDVKAGNILI------------  159 (516)
T ss_pred             ----ceeEEeehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhc-CceecccccccEEE------------
Confidence                7999999999 99999999887777899999999999999999999997 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc-
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-  268 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~-  268 (447)
                                                                                  +.++.|+|+|||.+....+ 
T Consensus       160 ------------------------------------------------------------~~dG~VkLadFgvsa~l~~~  179 (516)
T KOG0582|consen  160 ------------------------------------------------------------DSDGTVKLADFGVSASLFDS  179 (516)
T ss_pred             ------------------------------------------------------------cCCCcEEEcCceeeeeeccc
Confidence                                                                        5688999999998743221 


Q ss_pred             ------ccccCCCCCCccChHHhhc--CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCH
Q 013220          269 ------QFAEEIQTRQYRAPEVILR--AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  340 (447)
Q Consensus       269 ------~~~~~~gt~~y~aPE~l~~--~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~  340 (447)
                            ....++||++|+|||++..  ..|++|+||||||++.++|.+|..||....        .....++.+.+.+|.
T Consensus       180 G~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~p--------PmkvLl~tLqn~pp~  251 (516)
T KOG0582|consen  180 GDRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYP--------PMKVLLLTLQNDPPT  251 (516)
T ss_pred             CceeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCC--------hHHHHHHHhcCCCCC
Confidence                  1245689999999999765  369999999999999999999999996442        233344455555553


Q ss_pred             HhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccC
Q 013220          341 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~  420 (447)
                      .. ....      +.                       +-....+..|+.++..||+.||++||||+++|+|+||+....
T Consensus       252 ~~-t~~~------~~-----------------------d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlkh~FFk~~k~  301 (516)
T KOG0582|consen  252 LL-TSGL------DK-----------------------DEDKKFSKSFREMIALCLVKDPSKRPTASKLLKHAFFKKAKS  301 (516)
T ss_pred             cc-cccC------Ch-----------------------HHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhccHHHhhccc
Confidence            22 0000      00                       011223558999999999999999999999999999997654


Q ss_pred             C
Q 013220          421 T  421 (447)
Q Consensus       421 ~  421 (447)
                      +
T Consensus       302 ~  302 (516)
T KOG0582|consen  302 K  302 (516)
T ss_pred             h
Confidence            4

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.8e-44  Score=365.21  Aligned_cols=251  Identities=29%  Similarity=0.484  Sum_probs=217.6

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      |-|++.+-||.|+.|.|-+|++..||+.+|||++....    .....+.+|+.+|+.+      .||||+.+|++|... 
T Consensus        12 GpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi------~HpnVl~LydVwe~~-   84 (786)
T KOG0588|consen   12 GPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLI------EHPNVLRLYDVWENK-   84 (786)
T ss_pred             cceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHh------cCCCeeeeeeeeccC-
Confidence            68999999999999999999999999999999876652    2245688899999999      899999999999954 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                         .++|+|.||+ ||.|++.+...  +++.+.++++++.||+.|+.|||. ++|+|||+||+|+|+             
T Consensus        85 ---~~lylvlEyv~gGELFdylv~k--G~l~e~eaa~ff~QIi~gv~yCH~-~~icHRDLKpENlLL-------------  145 (786)
T KOG0588|consen   85 ---QHLYLVLEYVPGGELFDYLVRK--GPLPEREAAHFFRQILDGVSYCHA-FNICHRDLKPENLLL-------------  145 (786)
T ss_pred             ---ceEEEEEEecCCchhHHHHHhh--CCCCCHHHHHHHHHHHHHHHHHhh-hcceeccCCchhhhh-------------
Confidence               7999999999 99999888754  569999999999999999999999 599999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccc--cc
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA--NK  268 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~--~~  268 (447)
                                                                                 +...++|++|||.|...  +.
T Consensus       146 -----------------------------------------------------------d~~~nIKIADFGMAsLe~~gk  166 (786)
T KOG0588|consen  146 -----------------------------------------------------------DVKNNIKIADFGMASLEVPGK  166 (786)
T ss_pred             -----------------------------------------------------------hcccCEeeeccceeecccCCc
Confidence                                                                       44667999999999743  23


Q ss_pred             ccccCCCCCCccChHHhhcCCC-CccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          269 QFAEEIQTRQYRAPEVILRAGY-SFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       269 ~~~~~~gt~~y~aPE~l~~~~~-~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                      -....||++.|.|||++.|.+| +.++||||.|||||.|++|++||.+.          ++..+                
T Consensus       167 lLeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDd----------Nir~L----------------  220 (786)
T KOG0588|consen  167 LLETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDD----------NIRVL----------------  220 (786)
T ss_pred             cccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCCc----------cHHHH----------------
Confidence            4566799999999999999998 58999999999999999999999643          22222                


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                            +.++....+.+|.+++.++.+||++||+.||++|+|.+|+++|||+.--.
T Consensus       221 ----------------------LlKV~~G~f~MPs~Is~eaQdLLr~ml~VDp~~RiT~~eI~kHP~l~g~~  270 (786)
T KOG0588|consen  221 ----------------------LLKVQRGVFEMPSNISSEAQDLLRRMLDVDPSTRITTEEILKHPFLSGYT  270 (786)
T ss_pred             ----------------------HHHHHcCcccCCCcCCHHHHHHHHHHhccCccccccHHHHhhCchhhcCC
Confidence                                  23344455678899999999999999999999999999999999998543

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=3.4e-43  Score=353.90  Aligned_cols=307  Identities=29%  Similarity=0.465  Sum_probs=228.9

Q ss_pred             CCCccccccCccc--cCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCC
Q 013220           21 KGGYHAVRVGDLF--NGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPS   95 (447)
Q Consensus        21 ~~~~~~~~~g~~~--~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~   95 (447)
                      .+.|++|.+|+.-  -.++|++.+.||+|+||.||+|++..++..||+|++...   ......+.+|+.+++.+      
T Consensus         4 ~~~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l------   77 (359)
T cd07876           4 DSQFYSVQVADSTFTVLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCV------   77 (359)
T ss_pred             CCCcceecccchhhhhhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhC------
Confidence            4568899888821  137999999999999999999999999999999987643   23345677899999998      


Q ss_pred             CcceeeeecccccccCC--CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCC
Q 013220           96 NEKCVIRLIDHFKHAGP--NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPE  173 (447)
Q Consensus        96 ~~~~Iv~~~~~~~~~~~--~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~  173 (447)
                      +|+||+++++++.....  ....+|+||||+++++...+.    ..+++..+..++.|++.||+|||++ ||+||||||+
T Consensus        78 ~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~----~~~~~~~~~~~~~qi~~~L~~LH~~-~ivHrDlkp~  152 (359)
T cd07876          78 NHKNIISLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIH----MELDHERMSYLLYQMLCGIKHLHSA-GIIHRDLKPS  152 (359)
T ss_pred             CCCCEeeeeeeeccCCCccccceeEEEEeCCCcCHHHHHh----ccCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCHH
Confidence            89999999998865321  224689999999777776653    2378889999999999999999997 9999999999


Q ss_pred             CeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCccc
Q 013220          174 NILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDM  253 (447)
Q Consensus       174 Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (447)
                      ||++                                                                        +.++
T Consensus       153 NIl~------------------------------------------------------------------------~~~~  160 (359)
T cd07876         153 NIVV------------------------------------------------------------------------KSDC  160 (359)
T ss_pred             HEEE------------------------------------------------------------------------CCCC
Confidence            9999                                                                        3456


Q ss_pred             ceeEeecCccccccc--ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHH
Q 013220          254 RCKVVDFGNACRANK--QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALM  331 (447)
Q Consensus       254 ~~kL~Dfg~a~~~~~--~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~  331 (447)
                      .++|+|||++.....  ......+|..|+|||.+.+..++.++|||||||++|+|++|..||...      +.......+
T Consensus       161 ~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~------~~~~~~~~~  234 (359)
T cd07876         161 TLKILDFGLARTACTNFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGT------DHIDQWNKV  234 (359)
T ss_pred             CEEEecCCCccccccCccCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCC------CHHHHHHHH
Confidence            799999999865432  233457899999999999888999999999999999999999999866      345566677


Q ss_pred             HHHhCCCCHHhhhCCCCc-cchhcccchhhhhhhcccCchhHHh-----hhhcCCChhhHHHHHHHHhhccccCCCCCCC
Q 013220          332 MELIGKMPRKIAIGGAQS-KDYFDRHGDLKRIRRLKFWSLDRLL-----VDKYRFSETDAREFAEFLVPLLDFTPEKRPT  405 (447)
Q Consensus       332 ~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpt  405 (447)
                      .+.++..+..+....... ..+..........      .+....     ..........+..+.+||.+||+.||++|||
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t  308 (359)
T cd07876         235 IEQLGTPSAEFMNRLQPTVRNYVENRPQYPGI------SFEELFPDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRIS  308 (359)
T ss_pred             HHhcCCCcHHHHHHHHHHHHHHHhhCCCCCCc------chhhhccccccccccccccccchhHHHHHHHHhccCcccCCC
Confidence            777777666543221111 0111111000000      000000     0000112233567899999999999999999


Q ss_pred             hHHHhcCcccccccCCc
Q 013220          406 AQQCLQHPWLSLRNSTR  422 (447)
Q Consensus       406 a~elL~hp~f~~~~~~~  422 (447)
                      ++|+|+||||+.+....
T Consensus       309 ~~e~l~hp~~~~~~~~~  325 (359)
T cd07876         309 VDEALRHPYITVWYDPA  325 (359)
T ss_pred             HHHHhcCchhhhhcCcc
Confidence            99999999998654433

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.2e-43  Score=344.99  Aligned_cols=253  Identities=26%  Similarity=0.356  Sum_probs=209.3

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|++.+.||+|+||+||+|++..+++.||+|++....    ...+.+.+|+++++.+      .|+||+++++.+.+  
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~~~~~~--   72 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEV------SHPFIIRLFWTEHD--   72 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhC------CCCcHhhhHhhhcc--
Confidence            36999999999999999999999999999999886542    2345678899999999      78999999988774  


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                        ...+++||||+ +++|.+.+...  ..+++..+..++.|++.||+|||++ ||+||||||+||++             
T Consensus        73 --~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~NIli-------------  134 (291)
T cd05612          73 --QRFLYMLMEYVPGGELFSYLRNS--GRFSNSTGLFYASEIVCALEYLHSK-EIVYRDLKPENILL-------------  134 (291)
T ss_pred             --CCeEEEEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeecCCCHHHeEE-------------
Confidence              46899999999 88998888654  3588999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF  270 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~  270 (447)
                                                                                 +..+.++|+|||++.......
T Consensus       135 -----------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~  155 (291)
T cd05612         135 -----------------------------------------------------------DKEGHIKLTDFGFAKKLRDRT  155 (291)
T ss_pred             -----------------------------------------------------------CCCCCEEEEecCcchhccCCc
Confidence                                                                       345679999999997665554


Q ss_pred             ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          271 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      ...+|++.|+|||++.+..++.++|||||||++|+|++|..||...+      .......                    
T Consensus       156 ~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~------~~~~~~~--------------------  209 (291)
T cd05612         156 WTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDN------PFGIYEK--------------------  209 (291)
T ss_pred             ccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHH--------------------
Confidence            45679999999999998889999999999999999999999997542      1111111                    


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCC-----hHHHhcCcccccccCC
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLRNST  421 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpt-----a~elL~hp~f~~~~~~  421 (447)
                                            +......++...+..+.+||.+||+.||.+||+     ++++++||||+...-.
T Consensus       210 ----------------------i~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h~~~~~~~~~  263 (291)
T cd05612         210 ----------------------ILAGKLEFPRHLDLYAKDLIKKLLVVDRTRRLGNMKNGADDVKNHRWFKSVDWD  263 (291)
T ss_pred             ----------------------HHhCCcCCCccCCHHHHHHHHHHcCCCHHHccCCccCCHHHHhcCccccCCCHH
Confidence                                  111122344455678999999999999999995     9999999999865433

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=7.8e-43  Score=340.46  Aligned_cols=278  Identities=26%  Similarity=0.449  Sum_probs=216.4

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      ++|++.++||.|+||+||+|++..++..||+|+++...  .....+.+|+++++.+      +|+||+++++++..    
T Consensus         5 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~~~~~~~~----   74 (288)
T cd07871           5 ETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNL------KHANIVTLHDIIHT----   74 (288)
T ss_pred             ccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhC------CCCCEeeEEEEEcC----
Confidence            67999999999999999999999999999999876432  2234677899999999      78999999998874    


Q ss_pred             cceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          114 GQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       114 ~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ....++||||+.++|.+.+.... ..+++..+..++.|++.||+|||++ ||+||||||+||++                
T Consensus        75 ~~~~~lv~e~~~~~l~~~l~~~~-~~~~~~~~~~~~~qi~~aL~~LH~~-~ivH~dlkp~Nil~----------------  136 (288)
T cd07871          75 ERCLTLVFEYLDSDLKQYLDNCG-NLMSMHNVKIFMFQLLRGLSYCHKR-KILHRDLKPQNLLI----------------  136 (288)
T ss_pred             CCeEEEEEeCCCcCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCHHHEEE----------------
Confidence            36899999999778888775432 3478899999999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc---cc
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QF  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~---~~  270 (447)
                                                                              +....+||+|||++.....   ..
T Consensus       137 --------------------------------------------------------~~~~~~kl~DfG~~~~~~~~~~~~  160 (288)
T cd07871         137 --------------------------------------------------------NEKGELKLADFGLARAKSVPTKTY  160 (288)
T ss_pred             --------------------------------------------------------CCCCCEEECcCcceeeccCCCccc
Confidence                                                                    3356799999999865432   22


Q ss_pred             ccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 AEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      ....+++.|+|||.+.+ ..++.++|||||||++|+|++|+.||.+.      +....+..+.+.++..+..........
T Consensus       161 ~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (288)
T cd07871         161 SNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGS------TVKEELHLIFRLLGTPTEETWPGITSN  234 (288)
T ss_pred             cCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhCCCChHHhhccccc
Confidence            33467899999999876 46899999999999999999999999765      356677788888888877654332222


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      .++....       ..... ......    .....+.++.+||.+||++||.+|||++|+|+||||
T Consensus       235 ~~~~~~~-------~~~~~-~~~~~~----~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~hp~f  288 (288)
T cd07871         235 EEFRSYL-------FPQYR-AQPLIN----HAPRLDTDGIDLLSSLLLYETKSRISAEAALRHSYF  288 (288)
T ss_pred             hhhhccc-------cCccC-CCchHH----hCCCCCHHHHHHHHHhcCcCcccCCCHHHHhcCCCC
Confidence            2211100       00000 000000    112345678899999999999999999999999998

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=100.00  E-value=7.9e-44  Score=341.31  Aligned_cols=330  Identities=32%  Similarity=0.496  Sum_probs=256.3

Q ss_pred             CccccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeee
Q 013220           23 GYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIR  102 (447)
Q Consensus        23 ~~~~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~  102 (447)
                      |..-..+||.+. .||.+...+|+|+||.|-.|.+..++..||+|+++.-....+...-|+++|+.+....+.+---+|.
T Consensus        77 GH~v~~~gD~l~-~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~kYreAa~iEi~vLqki~~~DP~g~~rcv~  155 (415)
T KOG0671|consen   77 GHYVYQVGDILT-NRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVDKYREAALIEIEVLQKINESDPNGKFRCVQ  155 (415)
T ss_pred             ceEEEEeccccc-cceehhhhhcCCcccceEEEeecCCCceehHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCceEEEe
Confidence            444458899996 7999999999999999999999999999999999999998999999999999998766556666777


Q ss_pred             ecccccccCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCC
Q 013220          103 LIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTID  182 (447)
Q Consensus       103 ~~~~~~~~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~  182 (447)
                      +.+.|...    .++|||+|.+|.++++++..+.+.+++...++.+.+|++++++|||+. +|+|.|+||+||++.....
T Consensus       156 m~~wFdyr----ghiCivfellG~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~-kl~HTDLKPENILfvss~~  230 (415)
T KOG0671|consen  156 MRDWFDYR----GHICIVFELLGLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDL-KLTHTDLKPENILFVSSEY  230 (415)
T ss_pred             eehhhhcc----CceEEEEeccChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhc-ceeecCCChheEEEeccce
Confidence            77777654    699999999999999999998888999999999999999999999995 9999999999999965321


Q ss_pred             CCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCc
Q 013220          183 PSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGN  262 (447)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~  262 (447)
                      -...                                                 ..+.. ....  .......++|+|||.
T Consensus       231 ~~~~-------------------------------------------------~~k~~-~~~~--r~~ks~~I~vIDFGs  258 (415)
T KOG0671|consen  231 FKTY-------------------------------------------------NPKKK-VCFI--RPLKSTAIKVIDFGS  258 (415)
T ss_pred             EEEe-------------------------------------------------ccCCc-ccee--ccCCCcceEEEecCC
Confidence            0000                                                 00000 0000  012356799999999


Q ss_pred             ccccccccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh
Q 013220          263 ACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  342 (447)
Q Consensus       263 a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (447)
                      |....+..+..+.|..|+|||++.+.+++..+|+||+||||+++++|...|...      ++-.++++|..++|..|...
T Consensus       259 Atf~~e~hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtH------en~EHLaMMerIlGp~P~~m  332 (415)
T KOG0671|consen  259 ATFDHEHHSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTH------ENLEHLAMMERILGPIPSRM  332 (415)
T ss_pred             cceeccCcceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccC------CcHHHHHHHHHhhCCCcHHH
Confidence            988777777789999999999999999999999999999999999999999866      46678899999999999877


Q ss_pred             hhCCCCccchhcccchhhhhhhcccC------chhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccc
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFW------SLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  416 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~  416 (447)
                      ..... ...+|... ++.--...+-.      .....+.....-.+.....+.|||++||.+||.+|+|+.|+|.||||+
T Consensus       333 i~r~~-~~Kyf~~~-rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~RiTl~EAL~HpFF~  410 (415)
T KOG0671|consen  333 IKKTR-KEKYFRRG-RLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRITLREALSHPFFA  410 (415)
T ss_pred             hhhhh-hHhhhhcc-cccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCccccccHHHHhcCHHhh
Confidence            54432 33344322 22110000000      001111111112234455789999999999999999999999999998


Q ss_pred             cc
Q 013220          417 LR  418 (447)
Q Consensus       417 ~~  418 (447)
                      ..
T Consensus       411 ~~  412 (415)
T KOG0671|consen  411 RL  412 (415)
T ss_pred             cC
Confidence            64

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=1.1e-42  Score=338.33  Aligned_cols=280  Identities=26%  Similarity=0.464  Sum_probs=214.7

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.+.||+|+||+||+|++..+++.||+|+++...   .....+.+|+++++.+      .|+||+++++++..   
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~---   71 (287)
T cd07848           1 NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTL------KQENIVELKEAFRR---   71 (287)
T ss_pred             CCceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhC------CCccccchhhhEec---
Confidence            37999999999999999999999999999999876542   2345678899999999      78999999998874   


Q ss_pred             CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          113 NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       113 ~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                       ....++||||+.+.+.+.+... ...+++..++.++.|++.||+|||+. ||+||||||+||++               
T Consensus        72 -~~~~~lv~e~~~~~~l~~~~~~-~~~~~~~~~~~~~~qi~~~L~~lH~~-~i~H~dlkp~Nill---------------  133 (287)
T cd07848          72 -RGKLYLVFEYVEKNMLELLEEM-PNGVPPEKVRSYIYQLIKAIHWCHKN-DIVHRDIKPENLLI---------------  133 (287)
T ss_pred             -CCEEEEEEecCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEE---------------
Confidence             3689999999955555555432 24589999999999999999999996 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---  269 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---  269 (447)
                                                                               +....++|+|||++......   
T Consensus       134 ---------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~  156 (287)
T cd07848         134 ---------------------------------------------------------SHNDVLKLCDFGFARNLSEGSNA  156 (287)
T ss_pred             ---------------------------------------------------------cCCCcEEEeeccCcccccccccc
Confidence                                                                     33567999999999754322   


Q ss_pred             -cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          270 -FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       270 -~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                       .....|++.|+|||++.+..++.++|+|||||++|+|++|+.||...+      ....+..+....+..+.........
T Consensus       157 ~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  230 (287)
T cd07848         157 NYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGES------EIDQLFTIQKVLGPLPAEQMKLFYS  230 (287)
T ss_pred             cccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHhhCCCCHHHHHhhhc
Confidence             223468999999999998889999999999999999999999998653      4455666777778777655432211


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      ..       ...............   .........+.++.+||.+||+.||++|||++|+|+||||
T Consensus       231 ~~-------~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~hp~f  287 (287)
T cd07848         231 NP-------RFHGLRFPAVNHPQS---LERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLNHPAF  287 (287)
T ss_pred             cc-------hhcccccCcccCccc---HHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHhcCCCC
Confidence            10       000000000000000   0011223356789999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=2.1e-43  Score=337.92  Aligned_cols=286  Identities=32%  Similarity=0.496  Sum_probs=228.0

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH---hHHHHHHHHHHHHHhhcCCCCCcce-eeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ---FAQAALHEIEVLSAVADGDPSNEKC-VIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~---~~~~~~~E~~~l~~l~~~~~~~~~~-Iv~~~~~~~~~~  111 (447)
                      ..|...++||+|+||+||+|+...+|+.||+|.+..+..   ......+|+-+++.+      .|+| |+.+++++....
T Consensus        11 ~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L------~~~~~iv~L~dv~~~~~   84 (323)
T KOG0594|consen   11 FDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRL------SHANHIVRLHDVIHTSN   84 (323)
T ss_pred             HHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHh------CCCcceEEEEeeeeecc
Confidence            358888899999999999999999999999998776543   345678999999999      5666 999999988652


Q ss_pred             C--CcceEEEEEecccccHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCc
Q 013220          112 P--NGQHLCMVLEFLGDSLLRLIKYSRY--KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       112 ~--~~~~~~lvmE~~~~~L~~~~~~~~~--~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                      .  ....+++||||+..+|..++.....  .+++...++.+++||+.||+|||++ +|+||||||+||++          
T Consensus        85 ~~~~~~~l~lvfe~~d~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~-~IlHRDLKPQNlLi----------  153 (323)
T KOG0594|consen   85 NHRGIGKLYLVFEFLDRDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSH-GILHRDLKPQNLLI----------  153 (323)
T ss_pred             cccccceEEEEEEeecccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhC-CeecccCCcceEEE----------
Confidence            1  1237999999999999999976543  3688889999999999999999997 99999999999999          


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                    +..+.+||+|||+|....
T Consensus       154 --------------------------------------------------------------~~~G~lKlaDFGlAra~~  171 (323)
T KOG0594|consen  154 --------------------------------------------------------------SSSGVLKLADFGLARAFS  171 (323)
T ss_pred             --------------------------------------------------------------CCCCcEeeeccchHHHhc
Confidence                                                                          446789999999997544


Q ss_pred             ---cccccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhh
Q 013220          268 ---KQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  343 (447)
Q Consensus       268 ---~~~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  343 (447)
                         ...+..++|.+|+|||++.+. .|++.+||||+|||+++|++++..|++.+      +.+++..+++++|++.++-+
T Consensus       172 ip~~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~s------e~~ql~~If~~lGtP~e~~W  245 (323)
T KOG0594|consen  172 IPMRTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDS------EIDQLFRIFRLLGTPNEKDW  245 (323)
T ss_pred             CCcccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCc------HHHHHHHHHHHcCCCCccCC
Confidence               224566899999999999987 68999999999999999999999999884      78999999999999987543


Q ss_pred             hCCCCccch---hcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccC
Q 013220          344 IGGAQSKDY---FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       344 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~  420 (447)
                      .+.....++   |..+.+..        .+...       .........+++.+||+.+|.+|.||+.+|.||||.....
T Consensus       246 p~v~~~~~~k~~f~~~~~~~--------~l~~~-------~~~~~~~~~dll~~~L~y~p~~R~Sa~~al~h~yf~~~~~  310 (323)
T KOG0594|consen  246 PGVSSLPDYKAPFPKWPGPK--------DLSSI-------LPKLDPDGIELLSKLLQYDPAKRISAKGALTHPYFSELPE  310 (323)
T ss_pred             CCccccccccccCcCCCCcc--------chHHh-------ccccCccHHHHHHHHhccCcccCcCHHHHhcChhhccccc
Confidence            222211111   11111000        00100       1112257889999999999999999999999999997654


Q ss_pred             C
Q 013220          421 T  421 (447)
Q Consensus       421 ~  421 (447)
                      .
T Consensus       311 ~  311 (323)
T KOG0594|consen  311 K  311 (323)
T ss_pred             c
Confidence            3

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-43  Score=347.35  Aligned_cols=251  Identities=29%  Similarity=0.496  Sum_probs=207.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH---------------hHHHHHHHHHHHHHhhcCCCCCccee
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ---------------FAQAALHEIEVLSAVADGDPSNEKCV  100 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~---------------~~~~~~~E~~~l~~l~~~~~~~~~~I  100 (447)
                      ++|++.+.||+|.||.|-+|++..+++.||||++.+.+.               ..+..++|+.+|+++      +|+||
T Consensus        97 Nqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl------~H~nV  170 (576)
T KOG0585|consen   97 NQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKL------HHPNV  170 (576)
T ss_pred             hheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhc------CCcCe
Confidence            579999999999999999999999999999999765432               134788999999999      88999


Q ss_pred             eeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCC-CCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEee
Q 013220          101 IRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKG-LELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV  178 (447)
Q Consensus       101 v~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~-l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~  178 (447)
                      |+++.+..+.  ..+.+|||+||| .|.+...-   ..+. +++.+++.+++.++.||+|||.+ |||||||||.|+|+ 
T Consensus       171 V~LiEvLDDP--~s~~~YlVley~s~G~v~w~p---~d~~els~~~Ar~ylrDvv~GLEYLH~Q-giiHRDIKPsNLLl-  243 (576)
T KOG0585|consen  171 VKLIEVLDDP--ESDKLYLVLEYCSKGEVKWCP---PDKPELSEQQARKYLRDVVLGLEYLHYQ-GIIHRDIKPSNLLL-  243 (576)
T ss_pred             eEEEEeecCc--ccCceEEEEEeccCCccccCC---CCcccccHHHHHHHHHHHHHHHHHHHhc-CeeccccchhheEE-
Confidence            9999999876  567899999999 56553221   1233 88999999999999999999996 99999999999999 


Q ss_pred             ecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEe
Q 013220          179 STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVV  258 (447)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~  258 (447)
                                                                                             +..+.+||+
T Consensus       244 -----------------------------------------------------------------------~~~g~VKIs  252 (576)
T KOG0585|consen  244 -----------------------------------------------------------------------SSDGTVKIS  252 (576)
T ss_pred             -----------------------------------------------------------------------cCCCcEEee
Confidence                                                                                   446889999


Q ss_pred             ecCcccccc--------cccccCCCCCCccChHHhhcC---CC-CccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchH
Q 013220          259 DFGNACRAN--------KQFAEEIQTRQYRAPEVILRA---GY-SFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDED  326 (447)
Q Consensus       259 Dfg~a~~~~--------~~~~~~~gt~~y~aPE~l~~~---~~-~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~  326 (447)
                      |||.+....        ......+||+.|+|||.+.+.   .+ +.+.||||+||+||+|+.|++||.+...        
T Consensus       253 DFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~~~--------  324 (576)
T KOG0585|consen  253 DFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDDFE--------  324 (576)
T ss_pred             ccceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccchH--------
Confidence            999997542        123345899999999999863   23 5899999999999999999999976531        


Q ss_pred             HHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChh--hHHHHHHHHhhccccCCCCCC
Q 013220          327 HLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSET--DAREFAEFLVPLLDFTPEKRP  404 (447)
Q Consensus       327 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~ll~~~L~~dP~kRp  404 (447)
                           +++                                   .++|......+|..  +.+.+.|||.+||++||++|+
T Consensus       325 -----~~l-----------------------------------~~KIvn~pL~fP~~pe~~e~~kDli~~lL~KdP~~Ri  364 (576)
T KOG0585|consen  325 -----LEL-----------------------------------FDKIVNDPLEFPENPEINEDLKDLIKRLLEKDPEQRI  364 (576)
T ss_pred             -----HHH-----------------------------------HHHHhcCcccCCCcccccHHHHHHHHHHhhcChhhee
Confidence                 111                                   33444444444443  688999999999999999999


Q ss_pred             ChHHHhcCcccccc
Q 013220          405 TAQQCLQHPWLSLR  418 (447)
Q Consensus       405 ta~elL~hp~f~~~  418 (447)
                      |+.++-.|||.+..
T Consensus       365 ~l~~ik~Hpwvt~~  378 (576)
T KOG0585|consen  365 TLPDIKLHPWVTRD  378 (576)
T ss_pred             ehhhheecceeccC
Confidence            99999999999865

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=1.7e-42  Score=348.16  Aligned_cols=307  Identities=29%  Similarity=0.452  Sum_probs=226.3

Q ss_pred             CccccccCccc--cCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCc
Q 013220           23 GYHAVRVGDLF--NGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNE   97 (447)
Q Consensus        23 ~~~~~~~g~~~--~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~   97 (447)
                      +|++|.+|+-.  -.++|++.+.||+|+||.||+|++..+++.||+|.+...   ......+.+|+.+++.+      +|
T Consensus         2 ~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l------~h   75 (355)
T cd07874           2 QFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCV------NH   75 (355)
T ss_pred             cceeeccCchhhhhhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHh------CC
Confidence            57789888831  137999999999999999999999999999999987643   23345677899999998      88


Q ss_pred             ceeeeecccccccCC--CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCe
Q 013220           98 KCVIRLIDHFKHAGP--NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENI  175 (447)
Q Consensus        98 ~~Iv~~~~~~~~~~~--~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Ni  175 (447)
                      +||+++++++.....  .....++||||+++++...+..    .+++..+..++.|++.||+|||++ ||+||||||+||
T Consensus        76 ~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~----~l~~~~~~~~~~qi~~aL~~LH~~-givHrDikp~Ni  150 (355)
T cd07874          76 KNIISLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSA-GIIHRDLKPSNI  150 (355)
T ss_pred             CchhceeeeeeccccccccceeEEEhhhhcccHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCChHHE
Confidence            999999998865321  2346899999997777776642    378889999999999999999996 999999999999


Q ss_pred             EeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccce
Q 013220          176 LLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRC  255 (447)
Q Consensus       176 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (447)
                      ++                                                                        +.++.+
T Consensus       151 ll------------------------------------------------------------------------~~~~~~  158 (355)
T cd07874         151 VV------------------------------------------------------------------------KSDCTL  158 (355)
T ss_pred             EE------------------------------------------------------------------------CCCCCE
Confidence            99                                                                        345679


Q ss_pred             eEeecCcccccccc--cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHH
Q 013220          256 KVVDFGNACRANKQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMME  333 (447)
Q Consensus       256 kL~Dfg~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~  333 (447)
                      +|+|||++......  .....+|..|+|||++.+..++.++|||||||++|+|++|+.||.+.      ........+.+
T Consensus       159 kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~------~~~~~~~~~~~  232 (355)
T cd07874         159 KILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGR------DYIDQWNKVIE  232 (355)
T ss_pred             EEeeCcccccCCCccccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHH
Confidence            99999999765433  23457899999999999888999999999999999999999999765      34455566666


Q ss_pred             HhCCCCHHhhhCCC-CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          334 LIGKMPRKIAIGGA-QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       334 ~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                      .++....++..... ....+.............. ...+.............+..+.+||.+||+.||++|||+.|+|+|
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~h  311 (355)
T cd07874         233 QLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPK-LFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQH  311 (355)
T ss_pred             HhCCCCHHHHHhhcHHHHHHHhcCCccccccchh-hccccccccccccccccchHHHHHHHHHhcCCchhcCCHHHHhcC
Confidence            66665544432211 1111111111111000000 000000000111222345678999999999999999999999999


Q ss_pred             ccccccc
Q 013220          413 PWLSLRN  419 (447)
Q Consensus       413 p~f~~~~  419 (447)
                      |||....
T Consensus       312 p~~~~~~  318 (355)
T cd07874         312 PYINVWY  318 (355)
T ss_pred             cchhccc
Confidence            9998553

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=4.8e-43  Score=348.84  Aligned_cols=250  Identities=24%  Similarity=0.367  Sum_probs=208.7

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|.+.+.||+|+||.||+|++..+++.||+|+++...    ...+.+.+|+++++.+      +|+||+++++++..  
T Consensus        18 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~~~~~~--   89 (329)
T PTZ00263         18 SDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMEL------SHPFIVNMMCSFQD--   89 (329)
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhC------CCCCCCcEEEEEEc--
Confidence            67999999999999999999999999999999987653    2345678899999999      78999999998875  


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                        ....|+||||+ +++|.+.+...  ..+++..+..++.|++.||+|||++ ||+||||||+||++             
T Consensus        90 --~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-~ivH~dlkp~NIll-------------  151 (329)
T PTZ00263         90 --ENRVYFLLEFVVGGELFTHLRKA--GRFPNDVAKFYHAELVLAFEYLHSK-DIIYRDLKPENLLL-------------  151 (329)
T ss_pred             --CCEEEEEEcCCCCChHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeecCCCHHHEEE-------------
Confidence              36899999999 88998888654  3488999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF  270 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~  270 (447)
                                                                                 +.++.++|+|||++.......
T Consensus       152 -----------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~  172 (329)
T PTZ00263        152 -----------------------------------------------------------DNKGHVKVTDFGFAKKVPDRT  172 (329)
T ss_pred             -----------------------------------------------------------CCCCCEEEeeccCceEcCCCc
Confidence                                                                       446779999999998765555


Q ss_pred             ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          271 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      ...+|++.|+|||++.+..++.++|||||||++|+|++|..||.+.+      .......                    
T Consensus       173 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~------~~~~~~~--------------------  226 (329)
T PTZ00263        173 FTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDT------PFRIYEK--------------------  226 (329)
T ss_pred             ceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCC------HHHHHHH--------------------
Confidence            55689999999999998889999999999999999999999997542      1111111                    


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCC-----hHHHhcCcccccc
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLR  418 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpt-----a~elL~hp~f~~~  418 (447)
                                            +......++...+..+.+||.+||+.||.+||+     ++++++||||...
T Consensus       227 ----------------------i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~hp~f~~~  277 (329)
T PTZ00263        227 ----------------------ILAGRLKFPNWFDGRARDLVKGLLQTDHTKRLGTLKGGVADVKNHPYFHGA  277 (329)
T ss_pred             ----------------------HhcCCcCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCCccCCC
Confidence                                  111122233445668899999999999999997     7999999999864

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=3.8e-42  Score=342.36  Aligned_cols=284  Identities=27%  Similarity=0.426  Sum_probs=217.2

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC-
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP-  112 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~-  112 (447)
                      +|++.++||+|+||.||+|++..++..||+|.+...   ......+.+|+++++.+      +|+||+++++++..... 
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l------~hpniv~~~~~~~~~~~~   74 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLL------RHPDIVEIKHIMLPPSRR   74 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhC------CCCCEeeecceEeccCCC
Confidence            699999999999999999999999999999987643   12334678899999999      79999999998765422 


Q ss_pred             CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          113 NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       113 ~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      +...+|+|||||+++|.+.+...  ..+++..+..++.||+.||+|||++ ||+||||||+||++               
T Consensus        75 ~~~~~~lv~e~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~dlkp~NIll---------------  136 (338)
T cd07859          75 EFKDIYVVFELMESDLHQVIKAN--DDLTPEHHQFFLYQLLRALKYIHTA-NVFHRDLKPKNILA---------------  136 (338)
T ss_pred             CCceEEEEEecCCCCHHHHHHhc--ccCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHeEE---------------
Confidence            22468999999988898887644  3489999999999999999999996 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---  269 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---  269 (447)
                                                                               +..+.+||+|||++......   
T Consensus       137 ---------------------------------------------------------~~~~~~kL~Dfg~~~~~~~~~~~  159 (338)
T cd07859         137 ---------------------------------------------------------NADCKLKICDFGLARVAFNDTPT  159 (338)
T ss_pred             ---------------------------------------------------------CCCCcEEEccCccccccccccCc
Confidence                                                                     44677999999998643211   


Q ss_pred             ---cccCCCCCCccChHHhhc--CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhh
Q 013220          270 ---FAEEIQTRQYRAPEVILR--AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  344 (447)
Q Consensus       270 ---~~~~~gt~~y~aPE~l~~--~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (447)
                         ....+|++.|+|||++.+  ..++.++|||||||++|+|++|+.||...      +....+..+....|..+.....
T Consensus       160 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~  233 (338)
T cd07859         160 AIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGK------NVVHQLDLITDLLGTPSPETIS  233 (338)
T ss_pred             cccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCC------ChHHHHHHHHHHhCCCCHHHHH
Confidence               133578999999999876  57899999999999999999999999765      3455667777778877765432


Q ss_pred             CCCC--ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccC
Q 013220          345 GGAQ--SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       345 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~  420 (447)
                      ....  ...++...      .........    .   .....+..+.+||.+||+.||++|||++|+|+||||+....
T Consensus       234 ~i~~~~~~~~~~~~------~~~~~~~~~----~---~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~hp~f~~~~~  298 (338)
T cd07859         234 RVRNEKARRYLSSM------RKKQPVPFS----Q---KFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAK  298 (338)
T ss_pred             HhhhhhHHHHHHhh------cccCCCchH----H---hcCCCChHHHHHHHHHcCcCcccCCCHHHHhcCchhhhcCc
Confidence            2111  00010000      000000000    0   00123567889999999999999999999999999987554

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=2e-42  Score=339.92  Aligned_cols=285  Identities=26%  Similarity=0.394  Sum_probs=213.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      ++|++.++||+|+||+||+|++..+++.||+|+++...  .......+|+++++.+      +|+||+++++++..    
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~~~~~~~~----   74 (303)
T cd07869           5 DSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGL------KHANIVLLHDIIHT----   74 (303)
T ss_pred             ccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhC------CCCCcCeEEEEEec----
Confidence            68999999999999999999999999999999886543  2234567899999999      78999999998875    


Q ss_pred             cceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          114 GQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       114 ~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ....++||||+++++.+.+.... ..+++..++.++.|++.||+|||++ ||+||||||+||++                
T Consensus        75 ~~~~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~al~~lH~~-~ivH~dlkp~Nill----------------  136 (303)
T cd07869          75 KETLTLVFEYVHTDLCQYMDKHP-GGLHPENVKLFLFQLLRGLSYIHQR-YILHRDLKPQNLLI----------------  136 (303)
T ss_pred             CCeEEEEEECCCcCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEE----------------
Confidence            36899999999888887775432 4588999999999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc---cc
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QF  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~---~~  270 (447)
                                                                              +....+||+|||.+.....   ..
T Consensus       137 --------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~~  160 (303)
T cd07869         137 --------------------------------------------------------SDTGELKLADFGLARAKSVPSHTY  160 (303)
T ss_pred             --------------------------------------------------------CCCCCEEECCCCcceeccCCCccC
Confidence                                                                    3356799999999864432   22


Q ss_pred             ccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 AEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      ....+++.|+|||++.+. .++.++|||||||++|+|++|..||.+..     .....+..+....+.............
T Consensus       161 ~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (303)
T cd07869         161 SNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMK-----DIQDQLERIFLVLGTPNEDTWPGVHSL  235 (303)
T ss_pred             CCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCc-----cHHHHHHHHHHHhCCCChhhccchhhc
Confidence            335678999999998764 57899999999999999999999997653     334455566666665543322111110


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                      . .+...    .........+...+. ..    ..+..+.+||.+||+.||++|||++|+|+||||+...
T Consensus       236 ~-~~~~~----~~~~~~~~~~~~~~~-~~----~~~~~~~dli~~mL~~dp~~R~s~~~~l~h~~f~~~~  295 (303)
T cd07869         236 P-HFKPE----RFTLYSPKNLRQAWN-KL----SYVNHAEDLASKLLQCFPKNRLSAQAALSHEYFSDLP  295 (303)
T ss_pred             c-ccccc----cccccCCccHHHHhh-cc----CCChHHHHHHHHHhccCchhccCHHHHhcCcccccCC
Confidence            0 00000    000000111111111 00    1245788999999999999999999999999998754

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=4.5e-43  Score=348.80  Aligned_cols=257  Identities=26%  Similarity=0.424  Sum_probs=211.4

Q ss_pred             cCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH----hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           34 NGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ----FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        34 ~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~----~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      ..+.|.++..||+|+||.||+|+.+.||..||+|++++...    ...++..|-.+|...      +.+.||+++=+|.+
T Consensus       139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~------ds~~vVKLyYsFQD  212 (550)
T KOG0605|consen  139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEV------DSPWVVKLYYSFQD  212 (550)
T ss_pred             CcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhc------CCCcEEEEEEEecC
Confidence            34789999999999999999999999999999999887653    345788888899886      78899999999986


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                      .    +++||||||+ ||++-.++...  ..+++..++.++.+++.||..+|+. |+|||||||+|+||           
T Consensus       213 ~----~~LYLiMEylPGGD~mTLL~~~--~~L~e~~arfYiaE~vlAI~~iH~~-gyIHRDIKPdNlLi-----------  274 (550)
T KOG0605|consen  213 K----EYLYLIMEYLPGGDMMTLLMRK--DTLTEDWARFYIAETVLAIESIHQL-GYIHRDIKPDNLLI-----------  274 (550)
T ss_pred             C----CeeEEEEEecCCccHHHHHHhc--CcCchHHHHHHHHHHHHHHHHHHHc-CcccccCChhheee-----------
Confidence            5    8999999999 99999988854  4599999999999999999999995 99999999999999           


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                   +..+++||+|||+|.....
T Consensus       275 -------------------------------------------------------------D~~GHiKLSDFGLs~gl~~  293 (550)
T KOG0605|consen  275 -------------------------------------------------------------DAKGHIKLSDFGLSTGLDK  293 (550)
T ss_pred             -------------------------------------------------------------cCCCCEeeccccccchhhh
Confidence                                                                         6688999999999832110


Q ss_pred             -------------------------c-------------------------cccCCCCCCccChHHhhcCCCCccchhHh
Q 013220          269 -------------------------Q-------------------------FAEEIQTRQYRAPEVILRAGYSFSVDMWS  298 (447)
Q Consensus       269 -------------------------~-------------------------~~~~~gt~~y~aPE~l~~~~~~~~~DiwS  298 (447)
                                               +                         ....+|||-|+|||++.+..|+..+|.||
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwWS  373 (550)
T KOG0605|consen  294 KHRIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWS  373 (550)
T ss_pred             hhhhhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCccccHHH
Confidence                                     0                         11127899999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhc
Q 013220          299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKY  378 (447)
Q Consensus       299 lGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (447)
                      ||||||+|+.|..||.+.+..++      .+.++.-                                    ...    +
T Consensus       374 LG~ImyEmLvGyPPF~s~tp~~T------~rkI~nw------------------------------------r~~----l  407 (550)
T KOG0605|consen  374 LGCIMYEMLVGYPPFCSETPQET------YRKIVNW------------------------------------RET----L  407 (550)
T ss_pred             HHHHHHHHHhCCCCCCCCCHHHH------HHHHHHH------------------------------------hhh----c
Confidence            99999999999999988753322      2222211                                    111    1


Q ss_pred             CCCh--hhHHHHHHHHhhccccCCCCCC---ChHHHhcCcccccccCCc
Q 013220          379 RFSE--TDAREFAEFLVPLLDFTPEKRP---TAQQCLQHPWLSLRNSTR  422 (447)
Q Consensus       379 ~~~~--~~~~~l~~ll~~~L~~dP~kRp---ta~elL~hp~f~~~~~~~  422 (447)
                      .+|.  ..+.++.|||.+||. ||++|.   .++||-+||||+..+=..
T Consensus       408 ~fP~~~~~s~eA~DLI~rll~-d~~~RLG~~G~~EIK~HPfF~~v~W~~  455 (550)
T KOG0605|consen  408 KFPEEVDLSDEAKDLITRLLC-DPENRLGSKGAEEIKKHPFFKGVDWDH  455 (550)
T ss_pred             cCCCcCcccHHHHHHHHHHhc-CHHHhcCcccHHHHhcCCccccCCcch
Confidence            1222  235789999999999 999998   489999999999875333

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=7.6e-42  Score=344.69  Aligned_cols=306  Identities=29%  Similarity=0.471  Sum_probs=228.6

Q ss_pred             CCCccccccCccc--cCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCC
Q 013220           21 KGGYHAVRVGDLF--NGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPS   95 (447)
Q Consensus        21 ~~~~~~~~~g~~~--~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~   95 (447)
                      .++|.++..|+-.  ..++|++.+.||+|+||.||+|++..+++.||||.+...   ......+.+|+.+++.+      
T Consensus         7 ~~~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l------   80 (364)
T cd07875           7 DNNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCV------   80 (364)
T ss_pred             cccceeeecCcchhchhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhc------
Confidence            3467777776621  237999999999999999999999999999999987643   23345678899999998      


Q ss_pred             CcceeeeecccccccC--CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCC
Q 013220           96 NEKCVIRLIDHFKHAG--PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPE  173 (447)
Q Consensus        96 ~~~~Iv~~~~~~~~~~--~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~  173 (447)
                      +|+||+++++++....  ......|+||||+++++...+.    ..+++..+..++.|++.||+|||++ ||+||||||+
T Consensus        81 ~h~~ii~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~----~~~~~~~~~~~~~qi~~aL~~LH~~-~ivH~Dlkp~  155 (364)
T cd07875          81 NHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQ----MELDHERMSYLLYQMLCGIKHLHSA-GIIHRDLKPS  155 (364)
T ss_pred             CCCCccccceeecccccccccCeEEEEEeCCCCCHHHHHH----hcCCHHHHHHHHHHHHHHHHHHhhC-CeecCCCCHH
Confidence            7899999998876432  1234689999999878877664    2378889999999999999999997 9999999999


Q ss_pred             CeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCccc
Q 013220          174 NILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDM  253 (447)
Q Consensus       174 Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (447)
                      ||++                                                                        +.+.
T Consensus       156 NIll------------------------------------------------------------------------~~~~  163 (364)
T cd07875         156 NIVV------------------------------------------------------------------------KSDC  163 (364)
T ss_pred             HEEE------------------------------------------------------------------------CCCC
Confidence            9999                                                                        3456


Q ss_pred             ceeEeecCcccccccc--cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHH
Q 013220          254 RCKVVDFGNACRANKQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALM  331 (447)
Q Consensus       254 ~~kL~Dfg~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~  331 (447)
                      .++|+|||++......  .....+|..|+|||++.+..++.++|||||||++|+|++|+.||...+      .......+
T Consensus       164 ~~kL~DfG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~------~~~~~~~~  237 (364)
T cd07875         164 TLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTD------HIDQWNKV  237 (364)
T ss_pred             cEEEEeCCCccccCCCCcccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCCC------HHHHHHHH
Confidence            7999999999765433  234578999999999999899999999999999999999999997663      55666677


Q ss_pred             HHHhCCCCHHhhhCCCCc-cchhcccchhhhhhhcccCchhHHhhh-----hcCCChhhHHHHHHHHhhccccCCCCCCC
Q 013220          332 MELIGKMPRKIAIGGAQS-KDYFDRHGDLKRIRRLKFWSLDRLLVD-----KYRFSETDAREFAEFLVPLLDFTPEKRPT  405 (447)
Q Consensus       332 ~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~ll~~~L~~dP~kRpt  405 (447)
                      .+.++....++....... ..+.........      .........     ........+..+.+||.+||+.||.+|||
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t  311 (364)
T cd07875         238 IEQLGTPCPEFMKKLQPTVRTYVENRPKYAG------YSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRIS  311 (364)
T ss_pred             HHhcCCCCHHHHHhhhHHHHHHHhhCCCcCC------CChHhhCccccccccccccccccHHHHHHHHHhcCcCcccCCC
Confidence            777777665553322211 111111110000      001111000     01111223567899999999999999999


Q ss_pred             hHHHhcCcccccccCC
Q 013220          406 AQQCLQHPWLSLRNST  421 (447)
Q Consensus       406 a~elL~hp~f~~~~~~  421 (447)
                      +.|+|+||||......
T Consensus       312 ~~e~L~hp~~~~~~~~  327 (364)
T cd07875         312 VDEALQHPYINVWYDP  327 (364)
T ss_pred             HHHHhcCcccccccCc
Confidence            9999999999865443

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=100.00  E-value=1.8e-43  Score=348.72  Aligned_cols=314  Identities=35%  Similarity=0.596  Sum_probs=270.2

Q ss_pred             CCCccccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCccee
Q 013220           21 KGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCV  100 (447)
Q Consensus        21 ~~~~~~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~I  100 (447)
                      .-||+.|.+|++|. ++|.+..-.|+|-||+|-+|.+...+..||||++..++.....-..|+++|+.|......+-.|+
T Consensus       418 aEGYYrv~igE~LD-~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~M~KtGl~EleiLkKL~~AD~Edk~Hc  496 (752)
T KOG0670|consen  418 AEGYYRVRIGELLD-SRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEVMHKTGLKELEILKKLNDADPEDKFHC  496 (752)
T ss_pred             ccceEEEehhhhhc-ceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchHHhhhhhHHHHHHHHhhccCchhhhHH
Confidence            34899999999997 79999999999999999999999999999999999998878888999999999998887788899


Q ss_pred             eeecccccccCCCcceEEEEEecccccHHHHHHh-hccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeee
Q 013220          101 IRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKY-SRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVS  179 (447)
Q Consensus       101 v~~~~~~~~~~~~~~~~~lvmE~~~~~L~~~~~~-~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~  179 (447)
                      ++++.+|.+.    +|+|||+|.+.-.|..+++. +..-++..+.++.++.|++.||..|-. +||+|.||||+|||+. 
T Consensus       497 lrl~r~F~hk----nHLClVFE~LslNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~-c~vlHaDIKPDNiLVN-  570 (752)
T KOG0670|consen  497 LRLFRHFKHK----NHLCLVFEPLSLNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKK-CGVLHADIKPDNILVN-  570 (752)
T ss_pred             HHHHHHhhhc----ceeEEEehhhhchHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHh-cCeeecccCccceEec-
Confidence            9999999975    79999999998888888864 445678999999999999999999998 6999999999999994 


Q ss_pred             cCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEee
Q 013220          180 TIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVD  259 (447)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~D  259 (447)
                                                                                            +....+||||
T Consensus       571 ----------------------------------------------------------------------E~k~iLKLCD  580 (752)
T KOG0670|consen  571 ----------------------------------------------------------------------ESKNILKLCD  580 (752)
T ss_pred             ----------------------------------------------------------------------cCcceeeecc
Confidence                                                                                  3356789999


Q ss_pred             cCcccccc-cccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCC
Q 013220          260 FGNACRAN-KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKM  338 (447)
Q Consensus       260 fg~a~~~~-~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~  338 (447)
                      ||.|.... ...+.++-+.+|+|||++.|.+|+...|+||+||+||+|++|+..|++.      ++.+.+...|++-|++
T Consensus       581 fGSA~~~~eneitPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~------TNN~MLrl~me~KGk~  654 (752)
T KOG0670|consen  581 FGSASFASENEITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGR------TNNQMLRLFMELKGKF  654 (752)
T ss_pred             CccccccccccccHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCCC------CcHHHHHHHHHhcCCC
Confidence            99997654 5567777889999999999999999999999999999999999999998      5888999999999999


Q ss_pred             CHHhhhCCCCccchhcccchhhhhh--------------hccc-CchhHHhhhhcCCChh---hHHHHHHHHhhccccCC
Q 013220          339 PRKIAIGGAQSKDYFDRHGDLKRIR--------------RLKF-WSLDRLLVDKYRFSET---DAREFAEFLVPLLDFTP  400 (447)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~-~~~~~~~~~~~~~~~~---~~~~l~~ll~~~L~~dP  400 (447)
                      |..++.........|+.+-+.-++.              +.+. ..+...+.....++.+   +..+|.+||.+||..||
T Consensus       655 p~KmlRKgqF~dqHFD~d~nf~~~e~D~vT~r~~~~vm~~vkPtkdl~s~l~~~q~~~deq~~~~~~~rdLLdkml~LdP  734 (752)
T KOG0670|consen  655 PNKMLRKGQFKDQHFDQDLNFLYIEVDKVTEREKRTVMVNVKPTKDLGSELIAVQRLPDEQPKIVQQLRDLLDKMLILDP  734 (752)
T ss_pred             cHHHhhhcchhhhhcccccceEEEeccccccceeEEEecccCcchhHHHHHhccCCCCchhHHHHHHHHHHHHHHhccCh
Confidence            9999988888887787766544322              1111 1334444444334443   45689999999999999


Q ss_pred             CCCCChHHHhcCccccc
Q 013220          401 EKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       401 ~kRpta~elL~hp~f~~  417 (447)
                      ++|.|..|+|.||||+.
T Consensus       735 ~KRit~nqAL~HpFi~~  751 (752)
T KOG0670|consen  735 EKRITVNQALKHPFITE  751 (752)
T ss_pred             hhcCCHHHHhcCCcccC
Confidence            99999999999999985

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=6.8e-43  Score=339.06  Aligned_cols=258  Identities=29%  Similarity=0.432  Sum_probs=208.5

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh-HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA-AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      .+|...+.||+|+||+||++.+.+++..+|||..... ....+.+.+|+++|..+      .|++||++++......  .
T Consensus        17 ~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l------~~p~IV~~~G~~~~~~--~   88 (313)
T KOG0198|consen   17 SNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRL------NHPNIVQYYGSSSSRE--N   88 (313)
T ss_pred             chhhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhC------CCCCEEeeCCcccccc--C
Confidence            5688999999999999999999999999999965443 22256789999999999      7999999999754331  1


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ..++++|||+ +|+|.+++..... .+++..++.+.+|+++||+|||++ ||+|+||||+|||+                
T Consensus        89 ~~~~i~mEy~~~GsL~~~~~~~g~-~l~E~~v~~ytr~iL~GL~ylHs~-g~vH~DiK~~NiLl----------------  150 (313)
T KOG0198|consen   89 DEYNIFMEYAPGGSLSDLIKRYGG-KLPEPLVRRYTRQILEGLAYLHSK-GIVHCDIKPANILL----------------  150 (313)
T ss_pred             eeeEeeeeccCCCcHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHhC-CEeccCcccceEEE----------------
Confidence            4799999999 9999999987654 699999999999999999999997 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCc-ccceeEeecCccccccc----
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGI-DMRCKVVDFGNACRANK----  268 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~kL~Dfg~a~~~~~----  268 (447)
                                                                              +. .+.+||+|||.++....    
T Consensus       151 --------------------------------------------------------~~~~~~~KlaDFG~a~~~~~~~~~  174 (313)
T KOG0198|consen  151 --------------------------------------------------------DPSNGDVKLADFGLAKKLESKGTK  174 (313)
T ss_pred             --------------------------------------------------------eCCCCeEEeccCcccccccccccc
Confidence                                                                    33 46799999999976552    


Q ss_pred             --ccccCCCCCCccChHHhhcCC-CCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          269 --QFAEEIQTRQYRAPEVILRAG-YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       269 --~~~~~~gt~~y~aPE~l~~~~-~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                        ......||+.|+|||++.... ...++|||||||++.+|++|..||...        ....+.++.+....       
T Consensus       175 ~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~--------~~~~~~~~~ig~~~-------  239 (313)
T KOG0198|consen  175 SDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEF--------FEEAEALLLIGRED-------  239 (313)
T ss_pred             ccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhh--------cchHHHHHHHhccC-------
Confidence              123457999999999998632 335999999999999999999999642        11111122111000       


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccC
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~  420 (447)
                                                    ..+.+|..++.++.+||.+||..||++||||+++|+|||.+....
T Consensus       240 ------------------------------~~P~ip~~ls~~a~~Fl~~C~~~~p~~Rpta~eLL~hpf~~~~~~  284 (313)
T KOG0198|consen  240 ------------------------------SLPEIPDSLSDEAKDFLRKCFKRDPEKRPTAEELLEHPFLKQNSI  284 (313)
T ss_pred             ------------------------------CCCCCCcccCHHHHHHHHHHhhcCcccCcCHHHHhhChhhhcccc
Confidence                                          112467778899999999999999999999999999999987554

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=6e-42  Score=348.85  Aligned_cols=285  Identities=21%  Similarity=0.337  Sum_probs=215.7

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      ++|.+.++||+|+||.||+|++..+++.||+|....     ..+.+|+++++.+      +|+||++++++|..    ..
T Consensus        92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~-----~~~~~E~~il~~l------~HpnIv~~~~~~~~----~~  156 (391)
T PHA03212         92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQR-----GGTATEAHILRAI------NHPSIIQLKGTFTY----NK  156 (391)
T ss_pred             CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechhh-----hhhHHHHHHHHhC------CCCCCCCEeEEEEE----CC
Confidence            679999999999999999999999999999996442     3467899999999      78999999999875    36


Q ss_pred             eEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCC
Q 013220          116 HLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI  195 (447)
Q Consensus       116 ~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~  195 (447)
                      ..++|||+++++|...+...  ..+++..++.++.|++.||+|||++ ||+||||||+||++                  
T Consensus       157 ~~~lv~e~~~~~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~ylH~~-~IvHrDiKP~NIll------------------  215 (391)
T PHA03212        157 FTCLILPRYKTDLYCYLAAK--RNIAICDILAIERSVLRAIQYLHEN-RIIHRDIKAENIFI------------------  215 (391)
T ss_pred             eeEEEEecCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCChHhEEE------------------
Confidence            89999999988888877643  3588999999999999999999996 99999999999999                  


Q ss_pred             cCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc----ccc
Q 013220          196 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----QFA  271 (447)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~----~~~  271 (447)
                                                                            +....++|+|||++.....    ...
T Consensus       216 ------------------------------------------------------~~~~~vkL~DFG~a~~~~~~~~~~~~  241 (391)
T PHA03212        216 ------------------------------------------------------NHPGDVCLGDFGAACFPVDINANKYY  241 (391)
T ss_pred             ------------------------------------------------------cCCCCEEEEeCCcccccccccccccc
Confidence                                                                  3356799999999864321    223


Q ss_pred             cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCC-CCCCchHHHHHHHHHhCCCCHHhhhCCCCc-
Q 013220          272 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQ-GFCEDEDHLALMMELIGKMPRKIAIGGAQS-  349 (447)
Q Consensus       272 ~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-  349 (447)
                      ..+||+.|+|||++.+..++.++|||||||++|+|++|..||...+.. +......++..+.+..|..|..+....... 
T Consensus       242 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  321 (391)
T PHA03212        242 GWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQANL  321 (391)
T ss_pred             cccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCcchhHHH
Confidence            457999999999999888999999999999999999999887655322 122345677778888887775542111000 


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                      ...+................+.        .....+.++.+||.+||++||++||||+|+|+||||+..
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~Li~~mL~~dP~~Rpta~elL~hp~f~~~  382 (391)
T PHA03212        322 DEIYIGLAKKSSRKPGSRPLWT--------NLYELPIDLEYLICKMLAFDAHHRPSAEALLDFAAFQDI  382 (391)
T ss_pred             HHHHHHHHhccCCCCCCCCCHH--------HHhhhhhhHHHHHHHHhcCChhhCCCHHHHhcChhhccC
Confidence            0000000000000000000000        011346688999999999999999999999999999864

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=8e-43  Score=347.22  Aligned_cols=251  Identities=27%  Similarity=0.451  Sum_probs=217.3

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      .+|.+.+.||+|+||.||+|+.+.+.+.||+|++.+..   ...+.+.+|+++++.+      .|+||+.+++.|..+  
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~l------kHpniv~m~esfEt~--   73 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSL------KHPNIVEMLESFETS--   73 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhc------CCcchhhHHHhhccc--
Confidence            47999999999999999999999999999999876543   3456788999999999      899999999999854  


Q ss_pred             CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          113 NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       113 ~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                        .++|+|.|||.|+|+.++...  +.++++.++.++++++.||.|||++ +|+|||+||.||++               
T Consensus        74 --~~~~vVte~a~g~L~~il~~d--~~lpEe~v~~~a~~LVsaL~yLhs~-rilhrd~kPqniLl---------------  133 (808)
T KOG0597|consen   74 --AHLWVVTEYAVGDLFTILEQD--GKLPEEQVRAIAYDLVSALYYLHSN-RILHRDMKPQNILL---------------  133 (808)
T ss_pred             --ceEEEEehhhhhhHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHhc-CcccccCCcceeee---------------
Confidence              799999999966999988754  5599999999999999999999996 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---  269 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---  269 (447)
                                                                               +..+.+|+||||+|+.+...   
T Consensus       134 ---------------------------------------------------------~~~~~~KlcdFg~Ar~m~~~t~v  156 (808)
T KOG0597|consen  134 ---------------------------------------------------------EKGGTLKLCDFGLARAMSTNTSV  156 (808)
T ss_pred             ---------------------------------------------------------cCCCceeechhhhhhhcccCcee
Confidence                                                                     66788999999999866543   


Q ss_pred             cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          270 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      .+..-||+.|||||...+.+|+..+|+|||||++|+++.|+.||...+          +..+                  
T Consensus       157 ltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~s----------i~~L------------------  208 (808)
T KOG0597|consen  157 LTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYARS----------ITQL------------------  208 (808)
T ss_pred             eeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHHH----------HHHH------------------
Confidence            233469999999999999999999999999999999999999996542          1111                  


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                          .+.|..++...|.+.+..|+.||..+|++||.+|+|=.+++.|||++.+.
T Consensus       209 --------------------v~~I~~d~v~~p~~~S~~f~nfl~gLL~kdP~~RltW~~Ll~HpF~k~~~  258 (808)
T KOG0597|consen  209 --------------------VKSILKDPVKPPSTASSSFVNFLQGLLIKDPAQRLTWTDLLGHPFWKGKI  258 (808)
T ss_pred             --------------------HHHHhcCCCCCcccccHHHHHHHHHHhhcChhhcccHHHHhcChHHhhhh
Confidence                                23344455556778899999999999999999999999999999998653

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=9.9e-42  Score=332.11  Aligned_cols=282  Identities=27%  Similarity=0.447  Sum_probs=212.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCC-CCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTR-TSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~-~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|++.++||+|+||.||+|++.. ++..||+|.++...   .......+|+++++.+...   .|+||+++++++....
T Consensus         1 ~~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~---~hpniv~~~~~~~~~~   77 (290)
T cd07862           1 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETF---EHPNVVRLFDVCTVSR   77 (290)
T ss_pred             CCcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhccc---CCCCcceEEEEEeccc
Confidence            479999999999999999999854 47889999876432   2233566788888777432   6999999999875432


Q ss_pred             -CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 -PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 -~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                       .....+++||||++++|.+.+.......+++..+..++.|++.||+|||++ ||+||||||+||++             
T Consensus        78 ~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~-~iiH~dlkp~Nil~-------------  143 (290)
T cd07862          78 TDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH-RVVHRDLKPQNILV-------------  143 (290)
T ss_pred             CCCCCcEEEEEccCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeeCCCCHHHEEE-------------
Confidence             134579999999988898888655445689999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-  269 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-  269 (447)
                                                                                 +..+.++|+|||++...... 
T Consensus       144 -----------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~  164 (290)
T cd07862         144 -----------------------------------------------------------TSSGQIKLADFGLARIYSFQM  164 (290)
T ss_pred             -----------------------------------------------------------cCCCCEEEccccceEeccCCc
Confidence                                                                       33567999999998654322 


Q ss_pred             -cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH-hhhCCC
Q 013220          270 -FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK-IAIGGA  347 (447)
Q Consensus       270 -~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~  347 (447)
                       .....|+..|+|||.+.+..++.++|||||||++|+|++|..||.+.      ++...+..+....+..... +.....
T Consensus       165 ~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~  238 (290)
T cd07862         165 ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGS------SDVDQLGKILDVIGLPGEEDWPRDVA  238 (290)
T ss_pred             ccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCC------CHHHHHHHHHHHhCCCChhhchhhhc
Confidence             23346899999999999888999999999999999999999999866      3556666777666654432 111100


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      .....+...         ....+..       +....+..+.+||.+||+.||++|||+.|+|+||||
T Consensus       239 ~~~~~~~~~---------~~~~~~~-------~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~hp~f  290 (290)
T cd07862         239 LPRQAFHSK---------SAQPIEK-------FVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYF  290 (290)
T ss_pred             ccchhccCC---------CCCCHHH-------HccCCCHHHHHHHHHHhccCchhcCCHHHHhcCCCC
Confidence            000000000         0000111       112346678899999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=1.8e-41  Score=329.68  Aligned_cols=281  Identities=28%  Similarity=0.461  Sum_probs=213.8

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC-C
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG-P  112 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~-~  112 (447)
                      +|++.+.||+|+||+||+|++..+++.||+|.++...   .......+|+++++.+.+.   +|+||+++++++.... .
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~---~h~ni~~~~~~~~~~~~~   77 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAF---DHPNIVRLMDVCATSRTD   77 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhc---CCCCeeeeeeeeccccCC
Confidence            5999999999999999999999999999999876432   1233566788888887543   6999999999876532 2


Q ss_pred             CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          113 NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       113 ~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      .....+++|||+.+++..++.......+++..++.++.|++.||+|||+. ||+||||||+||++               
T Consensus        78 ~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~ivH~dikp~Nili---------------  141 (288)
T cd07863          78 RETKVTLVFEHVDQDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHAN-CIVHRDLKPENILV---------------  141 (288)
T ss_pred             CCceEEEEEcccccCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEE---------------
Confidence            34679999999977888887654445589999999999999999999996 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--c
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--F  270 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--~  270 (447)
                                                                               +....++|+|||++......  .
T Consensus       142 ---------------------------------------------------------~~~~~~kl~dfg~~~~~~~~~~~  164 (288)
T cd07863         142 ---------------------------------------------------------TSGGQVKLADFGLARIYSCQMAL  164 (288)
T ss_pred             ---------------------------------------------------------CCCCCEEECccCccccccCcccC
Confidence                                                                     33567999999998754422  2


Q ss_pred             ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC-CCCc
Q 013220          271 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG-GAQS  349 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~  349 (447)
                      ....++..|+|||++.+..++.++|||||||++|+|++|..||...      .....+..+....+.....-... ....
T Consensus       165 ~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (288)
T cd07863         165 TPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGN------SEADQLGKIFDLIGLPPEDDWPRDVTLP  238 (288)
T ss_pred             CCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCC------CHHHHHHHHHHHhCCCChhhCccccccc
Confidence            3456789999999999888999999999999999999999999755      34556666666666554322110 0000


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      ...+.         ........       .....+++.+.+||.+||+.||++|||+.|+|.||||
T Consensus       239 ~~~~~---------~~~~~~~~-------~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~hp~f  288 (288)
T cd07863         239 RGAFS---------PRGPRPVQ-------SVVPEIEESGAQLLLEMLTFNPHKRISAFRALQHPFF  288 (288)
T ss_pred             ccccC---------CCCCCchH-------HhCcCcCHHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence            00000         00000000       0112346678999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=1.3e-41  Score=331.42  Aligned_cols=256  Identities=28%  Similarity=0.366  Sum_probs=205.3

Q ss_pred             eEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           38 YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        38 y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      |++.+.||+|+||+||+|.+..+++.||+|.+....    .....+.+|+++++.+      +|++|+++++++..    
T Consensus         2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l------~~~~iv~~~~~~~~----   71 (285)
T cd05631           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKV------NSRFVVSLAYAYET----   71 (285)
T ss_pred             ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhc------CCCcEEEEEEEEcc----
Confidence            889999999999999999999999999999876543    2233567899999999      78899999998875    


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      .+..++||||+ +++|...+.......+++..+..++.|++.||+|||+. ||+||||||+||++               
T Consensus        72 ~~~~~lv~e~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~iiH~dikp~Nill---------------  135 (285)
T cd05631          72 KDALCLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRE-RIVYRDLKPENILL---------------  135 (285)
T ss_pred             CCeEEEEEEecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhC-CEEeCCCCHHHEEE---------------
Confidence            36899999999 78888776543334588999999999999999999996 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc--cc
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QF  270 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~--~~  270 (447)
                                                                               +....++|+|||++.....  ..
T Consensus       136 ---------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~  158 (285)
T cd05631         136 ---------------------------------------------------------DDRGHIRISDLGLAVQIPEGETV  158 (285)
T ss_pred             ---------------------------------------------------------CCCCCEEEeeCCCcEEcCCCCee
Confidence                                                                     3356799999999875432  22


Q ss_pred             ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          271 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      ....|+..|+|||++.+..++.++|||||||++|+|++|+.||......      .....+...+.              
T Consensus       159 ~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~------~~~~~~~~~~~--------------  218 (285)
T cd05631         159 RGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKER------VKREEVDRRVK--------------  218 (285)
T ss_pred             cCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcc------hhHHHHHHHhh--------------
Confidence            3457899999999999889999999999999999999999999765321      11111111110              


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCC-----hHHHhcCcccccccC
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLRNS  420 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpt-----a~elL~hp~f~~~~~  420 (447)
                                              .....++...+..+.+||++||+.||++||+     ++++++||||...+.
T Consensus       219 ------------------------~~~~~~~~~~s~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~h~~~~~~~~  269 (285)
T cd05631         219 ------------------------EDQEEYSEKFSEDAKSICRMLLTKNPKERLGCRGNGAAGVKQHPIFKNINF  269 (285)
T ss_pred             ------------------------cccccCCccCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHhcCHhhcCCCH
Confidence                                    0111233445678999999999999999997     899999999998653

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=1.6e-41  Score=350.92  Aligned_cols=286  Identities=25%  Similarity=0.377  Sum_probs=217.9

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC---
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG---  111 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~---  111 (447)
                      .++|++.+.||+|+||+||+|.+..+++.||||.+....   ....+|+.+++.+      .|+||++++++|....   
T Consensus        65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~---~~~~~Ei~il~~l------~h~niv~l~~~~~~~~~~~  135 (440)
T PTZ00036         65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP---QYKNRELLIMKNL------NHINIIFLKDYYYTECFKK  135 (440)
T ss_pred             CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc---chHHHHHHHHHhc------CCCCCcceeeeEeeccccc
Confidence            368999999999999999999999999999999775432   2345799999999      7899999988765422   


Q ss_pred             -CCcceEEEEEecccccHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          112 -PNGQHLCMVLEFLGDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       112 -~~~~~~~lvmE~~~~~L~~~~~~~--~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                       .....+++||||+++++...+...  ....+++..++.++.||+.||+|||++ ||+||||||+||++..         
T Consensus       136 ~~~~~~l~lvmE~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~-~IiHrDLKp~NILl~~---------  205 (440)
T PTZ00036        136 NEKNIFLNVVMEFIPQTVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSK-FICHRDLKPQNLLIDP---------  205 (440)
T ss_pred             CCCceEEEEEEecCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHC-CEecCCcCHHHEEEcC---------
Confidence             123468899999987887766532  234588999999999999999999996 9999999999999932         


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc-
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN-  267 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~-  267 (447)
                                                                                    ....+||+|||++.... 
T Consensus       206 --------------------------------------------------------------~~~~vkL~DFGla~~~~~  223 (440)
T PTZ00036        206 --------------------------------------------------------------NTHTLKLCDFGSAKNLLA  223 (440)
T ss_pred             --------------------------------------------------------------CCCceeeeccccchhccC
Confidence                                                                          12468999999997543 


Q ss_pred             -cccccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          268 -KQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       268 -~~~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                       ......+||+.|+|||++.+. .++.++|||||||++|+|++|..||.+.      .....+..+.+.+|.++.+....
T Consensus       224 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~------~~~~~~~~i~~~~~~p~~~~~~~  297 (440)
T PTZ00036        224 GQRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQ------SSVDQLVRIIQVLGTPTEDQLKE  297 (440)
T ss_pred             CCCcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC------ChHHHHHHHHHHhCCCCHHHHHH
Confidence             223345789999999998765 6899999999999999999999999876      35667777888888877554321


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccC
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~  420 (447)
                      ...   .|....    ........+..      .++...+.++.+||.+||+.||.+|||+.|+|+||||+....
T Consensus       298 ~~~---~~~~~~----~~~~~~~~l~~------~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~hp~f~~~~~  359 (440)
T PTZ00036        298 MNP---NYADIK----FPDVKPKDLKK------VFPKGTPDDAINFISQFLKYEPLKRLNPIEALADPFFDDLRD  359 (440)
T ss_pred             hch---hhhccc----CCccCchhHHH------HhccCCCHHHHHHHHHHCCCChhHCcCHHHHhCChhHHhhhc
Confidence            110   000000    00000000111      134455678999999999999999999999999999987654

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.9e-43  Score=326.35  Aligned_cols=253  Identities=25%  Similarity=0.368  Sum_probs=205.0

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecc-cccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLID-HFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~-~~~~~~  111 (447)
                      ..|++.++||.|+||.||++++..++..||.|-++..   ....+....|+.+|+.|      +|||||++++ .|..  
T Consensus        19 ~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL------~HpNIVqYy~~~f~~--   90 (375)
T KOG0591|consen   19 ADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQL------NHPNIVQYYAHSFIE--   90 (375)
T ss_pred             HHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhc------CCchHHHHHHHhhhc--
Confidence            5699999999999999999999999999999976644   34467888999999999      8999999999 5554  


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhhC-C--cccccCCCCCeEeeecCCCCC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSR--YKGLELNKVREICKYILTGLDYLHREL-G--IIHTDLKPENILLVSTIDPSK  185 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~--~~~l~~~~~~~i~~qil~aL~~lH~~~-g--IiH~Dikp~Nill~~~~~~~~  185 (447)
                       +..-++||||+| .|+|...+.+.+  .+.++++.+..++.|++.||..||++. .  |.||||||.||++        
T Consensus        91 -~~evlnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl--------  161 (375)
T KOG0591|consen   91 -DNEVLNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFL--------  161 (375)
T ss_pred             -cchhhHHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEE--------
Confidence             234599999999 899999887643  345999999999999999999999821 4  8899999999999        


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccc
Q 013220          186 DPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR  265 (447)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~  265 (447)
                                                                                      +.++.+||+|||+++.
T Consensus       162 ----------------------------------------------------------------~~~gvvKLGDfGL~r~  177 (375)
T KOG0591|consen  162 ----------------------------------------------------------------TANGVVKLGDFGLGRF  177 (375)
T ss_pred             ----------------------------------------------------------------cCCCceeeccchhHhH
Confidence                                                                            4467899999999976


Q ss_pred             ccc---ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh
Q 013220          266 ANK---QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  342 (447)
Q Consensus       266 ~~~---~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (447)
                      .+.   .....+|||+||+||.+.+.+|++++||||+||++|+|..-+.||.+..       ...+..-++- |.     
T Consensus       178 l~s~~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~n-------~~~L~~KI~q-gd-----  244 (375)
T KOG0591|consen  178 LSSKTTFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGDN-------LLSLCKKIEQ-GD-----  244 (375)
T ss_pred             hcchhHHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCccccc-------HHHHHHHHHc-CC-----
Confidence            553   3455799999999999999999999999999999999999999998762       1111111110 00     


Q ss_pred             hhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCC-hhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFS-ETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                                                        -++.| .-.+..+..+|.-|+..||+.||+.     +|++.+..+.
T Consensus       245 ----------------------------------~~~~p~~~YS~~l~~li~~ci~vd~~~RP~t-----~~~v~di~~~  285 (375)
T KOG0591|consen  245 ----------------------------------YPPLPDEHYSTDLRELINMCIAVDPEQRPDT-----VPYVQDIQSE  285 (375)
T ss_pred             ----------------------------------CCCCcHHHhhhHHHHHHHHHccCCcccCCCc-----chHHHHHHHH
Confidence                                              01133 3457889999999999999999986     6666655543

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=7.3e-42  Score=343.52  Aligned_cols=258  Identities=29%  Similarity=0.457  Sum_probs=215.3

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH----hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ----FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~----~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ..|.+.+.||.|.||.||+|+++.+++.+|+|++.+...    ....+.+|+++|+.+.     .|+||+.++++|... 
T Consensus        35 ~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~-----~hpniv~l~~~~e~~-  108 (382)
T KOG0032|consen   35 EKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLS-----GHPNIVQLKDAFEDP-  108 (382)
T ss_pred             ccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhcc-----CCCCEEEEEEEEEcC-
Confidence            689999999999999999999999999999998876653    3468999999999995     499999999999965 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                         ..+++|||+| |+.|++.+...   .+++..+..++.|++.|++|||+. ||+|||+||+|+|+....         
T Consensus       109 ---~~~~lvmEL~~GGeLfd~i~~~---~~sE~da~~~~~~il~av~~lH~~-gvvHrDlKpEN~L~~~~~---------  172 (382)
T KOG0032|consen  109 ---DSVYLVMELCEGGELFDRIVKK---HYSERDAAGIIRQILEAVKYLHSL-GVVHRDLKPENLLLASKD---------  172 (382)
T ss_pred             ---CeEEEEEEecCCchHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHhC-CceeccCCHHHeeecccc---------
Confidence               6999999999 89999988765   389999999999999999999995 999999999999995421         


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc--
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--  268 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~--  268 (447)
                                                                                 +....++++|||++.....  
T Consensus       173 -----------------------------------------------------------~~~~~ik~~DFGla~~~~~~~  193 (382)
T KOG0032|consen  173 -----------------------------------------------------------EGSGRIKLIDFGLAKFIKPGE  193 (382)
T ss_pred             -----------------------------------------------------------CCCCcEEEeeCCCceEccCCc
Confidence                                                                       1135799999999986654  


Q ss_pred             ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          269 QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       269 ~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      .....+||+.|+|||++.+.+|+..+||||+||++|.|+.|..||.+.+..+      ....+.+  |..        ..
T Consensus       194 ~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~------~~~~i~~--~~~--------~f  257 (382)
T KOG0032|consen  194 RLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFE------IFLAILR--GDF--------DF  257 (382)
T ss_pred             eEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhH------HHHHHHc--CCC--------CC
Confidence            4455699999999999999999999999999999999999999998874221      1111111  100        00


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                      ..                            ..-..++..+.+||++||..||.+|+||.++|+|||++..
T Consensus       258 ~~----------------------------~~w~~is~~akd~i~~ll~~dp~~R~ta~~~L~HpWi~~~  299 (382)
T KOG0032|consen  258 TS----------------------------EPWDDISESAKDFIRKLLEFDPRKRLTAAQALQHPWIKSI  299 (382)
T ss_pred             CC----------------------------CCccccCHHHHHHHHHhcccCcccCCCHHHHhcCccccCC
Confidence            11                            1123457899999999999999999999999999999975

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=2.8e-42  Score=342.33  Aligned_cols=245  Identities=28%  Similarity=0.445  Sum_probs=200.2

Q ss_pred             EeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceE
Q 013220           42 RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHL  117 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~  117 (447)
                      +.||+|+||.||+|++..+++.||+|+++...    .....+.+|+++++.+      .|+||++++..+..    ...+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l------~hp~i~~~~~~~~~----~~~~   70 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNT------RHPFLTALKYSFQT----HDRL   70 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhC------CCCCCCCEEEEEEc----CCEE
Confidence            36899999999999999999999999987543    2234677899999988      78999999988874    4689


Q ss_pred             EEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCc
Q 013220          118 CMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL  196 (447)
Q Consensus       118 ~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~  196 (447)
                      |+||||+ +++|...+...  ..+++..++.++.||+.||+|||++ ||+||||||+||++                   
T Consensus        71 ~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~L~~lH~~-~ivHrDlkp~NIll-------------------  128 (323)
T cd05571          71 CFVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSALGYLHSC-DVVYRDLKLENLML-------------------  128 (323)
T ss_pred             EEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeEeCCCCHHHEEE-------------------
Confidence            9999999 88898877643  4589999999999999999999996 99999999999999                   


Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc---cccccC
Q 013220          197 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEE  273 (447)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~---~~~~~~  273 (447)
                                                                           +..+.++|+|||++....   ......
T Consensus       129 -----------------------------------------------------~~~~~~kl~DfG~a~~~~~~~~~~~~~  155 (323)
T cd05571         129 -----------------------------------------------------DKDGHIKITDFGLCKEGISDGATMKTF  155 (323)
T ss_pred             -----------------------------------------------------CCCCCEEEeeCCCCcccccCCCcccce
Confidence                                                                 345679999999986432   222345


Q ss_pred             CCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchh
Q 013220          274 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  353 (447)
Q Consensus       274 ~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  353 (447)
                      +||+.|+|||++.+..++.++|||||||++|+|++|..||...+      .......                       
T Consensus       156 ~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~------~~~~~~~-----------------------  206 (323)
T cd05571         156 CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD------HEKLFEL-----------------------  206 (323)
T ss_pred             ecCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCCC------HHHHHHH-----------------------
Confidence            78999999999998889999999999999999999999996542      1111111                       


Q ss_pred             cccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC-----ChHHHhcCccccccc
Q 013220          354 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRN  419 (447)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp-----ta~elL~hp~f~~~~  419 (447)
                                         +......++...+.++.+||.+||+.||++||     ++.++++||||+...
T Consensus       207 -------------------~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~h~~f~~~~  258 (323)
T cd05571         207 -------------------ILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPEDAKEIMEHRFFASIN  258 (323)
T ss_pred             -------------------HHcCCCCCCCCCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHHcCCCcCCCC
Confidence                               11112234455677899999999999999999     899999999998753

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=100.00  E-value=2.8e-41  Score=339.23  Aligned_cols=302  Identities=31%  Similarity=0.489  Sum_probs=230.1

Q ss_pred             CccccccCccc--cCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCc
Q 013220           23 GYHAVRVGDLF--NGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNE   97 (447)
Q Consensus        23 ~~~~~~~g~~~--~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~   97 (447)
                      +||||.+|+..  -.++|++.+.||+|+||.||+|++..++..||+|.+...   ......+.+|+++++.+      +|
T Consensus         1 ~~~~~~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l------~h   74 (353)
T cd07850           1 QFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLV------NH   74 (353)
T ss_pred             CceeecccchhhhhhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhc------CC
Confidence            69999999932  137999999999999999999999999999999987532   23345677899999999      78


Q ss_pred             ceeeeecccccccC--CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCe
Q 013220           98 KCVIRLIDHFKHAG--PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENI  175 (447)
Q Consensus        98 ~~Iv~~~~~~~~~~--~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Ni  175 (447)
                      +||++++++|....  .+....|+||||++++|...+..    .+++..+..++.|++.||+|||++ ||+||||||+||
T Consensus        75 ~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~----~l~~~~~~~~~~ql~~aL~~LH~~-gi~H~dlkp~Ni  149 (353)
T cd07850          75 KNIIGLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIQM----DLDHERMSYLLYQMLCGIKHLHSA-GIIHRDLKPSNI  149 (353)
T ss_pred             CCCcceeeeeccCCCccccCcEEEEEeccCCCHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHhC-CeeeCCCCHHHE
Confidence            99999999886432  13346899999998888877653    278899999999999999999996 999999999999


Q ss_pred             EeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccce
Q 013220          176 LLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRC  255 (447)
Q Consensus       176 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (447)
                      ++                                                                        +....+
T Consensus       150 l~------------------------------------------------------------------------~~~~~~  157 (353)
T cd07850         150 VV------------------------------------------------------------------------KSDCTL  157 (353)
T ss_pred             EE------------------------------------------------------------------------CCCCCE
Confidence            99                                                                        345679


Q ss_pred             eEeecCccccccccc--ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHH
Q 013220          256 KVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMME  333 (447)
Q Consensus       256 kL~Dfg~a~~~~~~~--~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~  333 (447)
                      +|+|||.+.......  ....++..|+|||.+.+..++.++|+|||||++|+|++|..||...+      .......+..
T Consensus       158 kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~------~~~~~~~~~~  231 (353)
T cd07850         158 KILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTD------HIDQWNKIIE  231 (353)
T ss_pred             EEccCccceeCCCCCCCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCCC------HHHHHHHHHH
Confidence            999999997654322  23467889999999999889999999999999999999999997653      4556777777


Q ss_pred             HhCCCCHHhhhCCCCccchh-cccchhhhhhhcccCchhHHhhhh------cCCChhhHHHHHHHHhhccccCCCCCCCh
Q 013220          334 LIGKMPRKIAIGGAQSKDYF-DRHGDLKRIRRLKFWSLDRLLVDK------YRFSETDAREFAEFLVPLLDFTPEKRPTA  406 (447)
Q Consensus       334 ~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~ll~~~L~~dP~kRpta  406 (447)
                      .+|..+.++..........+ ........      ..+.......      ...+...+..+.+||.+||+.||++|||+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~  305 (353)
T cd07850         232 QLGTPSDEFMSRLQPTVRNYVENRPKYAG------YSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRISV  305 (353)
T ss_pred             hcCCCCHHHHHHhhhhhhHHhhcCCCCCC------cchhhhCcccccCcccccccccchhHHHHHHHHHcCCChhhCcCH
Confidence            88887776643332222111 11110000      0011110000      00122346788999999999999999999


Q ss_pred             HHHhcCccccccc
Q 013220          407 QQCLQHPWLSLRN  419 (447)
Q Consensus       407 ~elL~hp~f~~~~  419 (447)
                      +|+|.||||+.+.
T Consensus       306 ~eiL~~~~~~~~~  318 (353)
T cd07850         306 DDALQHPYINVWY  318 (353)
T ss_pred             HHHhcChhHhhcc
Confidence            9999999987543

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=8.5e-42  Score=341.55  Aligned_cols=251  Identities=25%  Similarity=0.347  Sum_probs=206.6

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCC-eEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTS-SYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~-~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      ++|++.+.||+|+||.||+|.+..++ ..||+|++....    ...+.+.+|+++++.+      +|+||+++++++.. 
T Consensus        30 ~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l------~hp~Iv~~~~~~~~-  102 (340)
T PTZ00426         30 EDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYI------NHPFCVNLYGSFKD-  102 (340)
T ss_pred             hhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhC------CCCCCcceEEEEEe-
Confidence            67999999999999999999876554 789999876542    2345678899999999      78999999999875 


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                         ....|+||||+ +++|.+.+...  ..+++..+..++.|++.||+|||++ ||+||||||+|||+            
T Consensus       103 ---~~~~~lv~Ey~~~g~L~~~i~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-~ivHrDLkp~NILl------------  164 (340)
T PTZ00426        103 ---ESYLYLVLEFVIGGEFFTFLRRN--KRFPNDVGCFYAAQIVLIFEYLQSL-NIVYRDLKPENLLL------------  164 (340)
T ss_pred             ---CCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEccCCCHHHEEE------------
Confidence               36899999999 88999888654  3589999999999999999999996 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                  +..+.++|+|||++......
T Consensus       165 ------------------------------------------------------------~~~~~ikL~DFG~a~~~~~~  184 (340)
T PTZ00426        165 ------------------------------------------------------------DKDGFIKMTDFGFAKVVDTR  184 (340)
T ss_pred             ------------------------------------------------------------CCCCCEEEecCCCCeecCCC
Confidence                                                                        34567999999999766555


Q ss_pred             cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          270 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      ....+||+.|+|||++.+..++.++|+|||||++|+|++|..||...+      .......+.                 
T Consensus       185 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~------~~~~~~~i~-----------------  241 (340)
T PTZ00426        185 TYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANE------PLLIYQKIL-----------------  241 (340)
T ss_pred             cceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCCC------HHHHHHHHh-----------------
Confidence            555689999999999998889999999999999999999999997542      111111111                 


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC-----ChHHHhcCccccccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRN  419 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp-----ta~elL~hp~f~~~~  419 (447)
                                               .....++...+..+.++|++||+.||++|+     |++++++||||....
T Consensus       242 -------------------------~~~~~~p~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~hp~f~~~~  291 (340)
T PTZ00426        242 -------------------------EGIIYFPKFLDNNCKHLMKKLLSHDLTKRYGNLKKGAQNVKEHPWFGNID  291 (340)
T ss_pred             -------------------------cCCCCCCCCCCHHHHHHHHHHcccCHHHcCCCCCCCHHHHHcCCCcCCCC
Confidence                                     111123344566789999999999999995     899999999998654

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=4.4e-41  Score=336.21  Aligned_cols=285  Identities=29%  Similarity=0.488  Sum_probs=219.5

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.+.||.|+||+||+|.+..++..||+|.+....   .....+.+|+++++.+      .|+||+++++++.....
T Consensus        15 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~~~~   88 (343)
T cd07878          15 ERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHM------KHENVIGLLDVFTPATS   88 (343)
T ss_pred             hhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhc------CCCchhhhhhhhccccc
Confidence            68999999999999999999999999999999876432   2345677899999999      78999999998864321


Q ss_pred             --CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          113 --NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       113 --~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                        .....|++|++++++|...+..   ..+++..+..++.||+.||+|||++ ||+||||||+||++             
T Consensus        89 ~~~~~~~~~~~~~~~~~l~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~-~ivHrdikp~Nil~-------------  151 (343)
T cd07878          89 IENFNEVYLVTNLMGADLNNIVKC---QKLSDEHVQFLIYQLLRGLKYIHSA-GIIHRDLKPSNVAV-------------  151 (343)
T ss_pred             ccccCcEEEEeecCCCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC-CeecccCChhhEEE-------------
Confidence              2246899999999999877653   3489999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF  270 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~  270 (447)
                                                                                 +.+..+||+|||++.......
T Consensus       152 -----------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~  172 (343)
T cd07878         152 -----------------------------------------------------------NEDCELRILDFGLARQADDEM  172 (343)
T ss_pred             -----------------------------------------------------------CCCCCEEEcCCccceecCCCc
Confidence                                                                       345679999999998776666


Q ss_pred             ccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 AEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      ...++|+.|+|||++.+ ..++.++|||||||++|+|++|..||...      +....+..+.+..+..+..+.......
T Consensus       173 ~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (343)
T cd07878         173 TGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGN------DYIDQLKRIMEVVGTPSPEVLKKISSE  246 (343)
T ss_pred             CCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCC------CHHHHHHHHHHHhCCCCHHHHHhcchh
Confidence            66789999999999987 46889999999999999999999999765      345566667777776665543211100


Q ss_pred             c--chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          350 K--DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       350 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                      .  .+..      .........+...       ....++.+.+||.+||+.||++|||++|+|+||||......
T Consensus       247 ~~~~~~~------~~~~~~~~~~~~~-------~~~~~~~~~~li~~mL~~dp~~R~s~~ell~hp~~~~~~~~  307 (343)
T cd07878         247 HARKYIQ------SLPHMPQQDLKKI-------FRGANPLAIDLLEKMLVLDSDKRISASEALAHPYFSQYHDP  307 (343)
T ss_pred             hHHHHhh------ccccccchhHHHh-------ccCCCHHHHHHHHHHcCCChhhCCCHHHHhcCcchhccCCC
Confidence            0  0000      0000000000110       11234568899999999999999999999999999976543

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.1e-42  Score=337.39  Aligned_cols=253  Identities=26%  Similarity=0.483  Sum_probs=220.9

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      |=|.+.+-||+|.|+.|-+|++.-+|+.||||++.+.+   ....+++.|+++|+.+      .|||||++|.+..    
T Consensus        18 GLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLV------QHpNiVRLYEViD----   87 (864)
T KOG4717|consen   18 GLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLV------QHPNIVRLYEVID----   87 (864)
T ss_pred             eeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHh------cCcCeeeeeehhc----
Confidence            56999999999999999999999999999999987654   3345889999999999      7999999999986    


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                      ++-.+|+|+|.= +|+|+++++... .+++++.++.+++||+.|+.|||+ +.+||||+||+|+++..            
T Consensus        88 TQTKlyLiLELGD~GDl~DyImKHe-~Gl~E~La~kYF~QI~~AI~YCHq-LHVVHRDLKPENVVFFE------------  153 (864)
T KOG4717|consen   88 TQTKLYLILELGDGGDLFDYIMKHE-EGLNEDLAKKYFAQIVHAISYCHQ-LHVVHRDLKPENVVFFE------------  153 (864)
T ss_pred             ccceEEEEEEecCCchHHHHHHhhh-ccccHHHHHHHHHHHHHHHHHHhh-hhhhcccCCcceeEEee------------
Confidence            446899999988 789999998755 579999999999999999999999 69999999999999843            


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccc--ccc
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA--NKQ  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~--~~~  269 (447)
                                                                                 .-+-+||.|||++...  ++.
T Consensus       154 -----------------------------------------------------------KlGlVKLTDFGFSNkf~PG~k  174 (864)
T KOG4717|consen  154 -----------------------------------------------------------KLGLVKLTDFGFSNKFQPGKK  174 (864)
T ss_pred             -----------------------------------------------------------ecCceEeeeccccccCCCcch
Confidence                                                                       3467999999999654  355


Q ss_pred             cccCCCCCCccChHHhhcCCCC-ccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          270 FAEEIQTRQYRAPEVILRAGYS-FSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~~~-~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      .+..||+..|.|||++.+..|+ +++||||||||||+|+.|+.||...      ++...+.+|+..              
T Consensus       175 L~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeA------NDSETLTmImDC--------------  234 (864)
T KOG4717|consen  175 LTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEA------NDSETLTMIMDC--------------  234 (864)
T ss_pred             hhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccc------cchhhhhhhhcc--------------
Confidence            6778999999999999999886 8999999999999999999999876      344455555543              


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                  .+..|.-++.++++||..||..||.+|.+.++|..|+|++...
T Consensus       235 ----------------------------KYtvPshvS~eCrdLI~sMLvRdPkkRAslEeI~s~~Wlq~~D  277 (864)
T KOG4717|consen  235 ----------------------------KYTVPSHVSKECRDLIQSMLVRDPKKRASLEEIVSTSWLQAGD  277 (864)
T ss_pred             ----------------------------cccCchhhhHHHHHHHHHHHhcCchhhccHHHHhccccccCCC
Confidence                                        3346778899999999999999999999999999999999765

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.8e-41  Score=336.39  Aligned_cols=259  Identities=24%  Similarity=0.387  Sum_probs=208.4

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|++.++||+|+||.||+|++..+++.||+|+++...    .....+.+|+++++.+      .|+||+++++++..  
T Consensus         1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~------~h~~iv~~~~~~~~--   72 (333)
T cd05600           1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTT------KSEWLVKLLYAFQD--   72 (333)
T ss_pred             CCcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhC------CCCCCccEEEEEEc--
Confidence            47999999999999999999999999999999987653    2345677899999988      78999999998874  


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                        +...|+||||+ +++|.+++...  ..+++..++.++.||+.||+|||+. ||+||||||+||++             
T Consensus        73 --~~~~~lv~e~~~g~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH~~-~ivH~dlkp~Nil~-------------  134 (333)
T cd05600          73 --DEYLYLAMEYVPGGDFRTLLNNL--GVLSEDHARFYMAEMFEAVDALHEL-GYIHRDLKPENFLI-------------  134 (333)
T ss_pred             --CCEEEEEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCCHHHEEE-------------
Confidence              46899999999 88999988643  3588999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF  270 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~  270 (447)
                                                                                 +..+.+||+|||++.......
T Consensus       135 -----------------------------------------------------------~~~~~~kL~Dfg~a~~~~~~~  155 (333)
T cd05600         135 -----------------------------------------------------------DASGHIKLTDFGLSKGIVTYA  155 (333)
T ss_pred             -----------------------------------------------------------CCCCCEEEEeCcCCccccccc
Confidence                                                                       345679999999997665555


Q ss_pred             ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          271 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      ...+||+.|+|||++.+..++.++|||||||++|+|++|..||...+      .......+..........         
T Consensus       156 ~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~------~~~~~~~i~~~~~~~~~~---------  220 (333)
T cd05600         156 NSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGST------PNETWENLKYWKETLQRP---------  220 (333)
T ss_pred             CCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCC------HHHHHHHHHhccccccCC---------
Confidence            56689999999999998899999999999999999999999997542      111111111100000000         


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                       .+                      .  ......+.++.+||.+||..+|.+||+++++++||||+...
T Consensus       221 -~~----------------------~--~~~~~~s~~~~~li~~~l~~~~~rr~s~~~ll~h~~~~~~~  264 (333)
T cd05600         221 -VY----------------------D--DPRFNLSDEAWDLITKLINDPSRRFGSLEDIKNHPFFKEVD  264 (333)
T ss_pred             -CC----------------------C--ccccccCHHHHHHHHHHhhChhhhcCCHHHHHhCcccCCCC
Confidence             00                      0  00013466889999999999999999999999999999753

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=9.9e-42  Score=329.77  Aligned_cols=300  Identities=25%  Similarity=0.320  Sum_probs=213.8

Q ss_pred             ccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHh----HHHHHHHHHHHHHhhcCCCCCcceeeeeccc
Q 013220           31 DLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQF----AQAALHEIEVLSAVADGDPSNEKCVIRLIDH  106 (447)
Q Consensus        31 ~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~----~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~  106 (447)
                      ..++-+.|++.++||.|.-|+||+|+...++..||+|++.+....    ......|-+||+++      +||.+..+|..
T Consensus        72 ~~l~l~~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~l------DHPFlPTLYa~  145 (459)
T KOG0610|consen   72 GSLGLRHFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLL------DHPFLPTLYAS  145 (459)
T ss_pred             CccCHHHHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhc------CCCccchhhhe
Confidence            344457899999999999999999999999999999998876533    34667799999999      89999999999


Q ss_pred             ccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecC----
Q 013220          107 FKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTI----  181 (447)
Q Consensus       107 ~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~----  181 (447)
                      |..    .++.|++|||| ||+|..+......+.++++.++.++..++.||+|||- +|||.|||||+||||....    
T Consensus       146 fet----~~~~cl~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHm-lGivYRDLKPENILvredGHIML  220 (459)
T KOG0610|consen  146 FET----DKYSCLVMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHM-LGIVYRDLKPENILVREDGHIML  220 (459)
T ss_pred             eec----cceeEEEEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHh-hceeeccCCcceeEEecCCcEEe
Confidence            985    48999999999 9999999988888889999999999999999999999 6999999999999995540    


Q ss_pred             ---CCCCC-cccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCcc-CCCccccee
Q 013220          182 ---DPSKD-PIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERC-LDGIDMRCK  256 (447)
Q Consensus       182 ---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~k  256 (447)
                         +.... .+.+.+.....+.. .                          ........  +-+++...- ......+-|
T Consensus       221 sDFDLS~~~~~~Pt~~~s~~~~~-~--------------------------~~~~~~~~--~~~s~f~~r~~~~~~~~~k  271 (459)
T KOG0610|consen  221 SDFDLSLRCPVSPTLVKSSSPRS-S--------------------------GSQPSCRS--RQPSCFSPRCLSSSKKRKK  271 (459)
T ss_pred             eeccccccCCCCCeeeccCCCCC-C--------------------------CCCccccc--ccccccccchhcccccccc
Confidence               00000 11111100000000 0                          00000000  001111100 000000000


Q ss_pred             EeecCcc--------cccccccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHH
Q 013220          257 VVDFGNA--------CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHL  328 (447)
Q Consensus       257 L~Dfg~a--------~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~  328 (447)
                       .|.+..        .+.+-.-..++||-.|+|||++.|...+.++|.|+|||.+|+|+.|..||.+.+..++       
T Consensus       272 -~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~GHgsAVDWWtfGIflYEmLyG~TPFKG~~~~~T-------  343 (459)
T KOG0610|consen  272 -KDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEGHGSAVDWWTFGIFLYEMLYGTTPFKGSNNKET-------  343 (459)
T ss_pred             -ccccccccchhhhcCCCCccccccccccccccceeeecCCCCchhhHHHHHHHHHHHHhCCCCcCCCCchhh-------
Confidence             222211        0111112235899999999999999999999999999999999999999998864433       


Q ss_pred             HHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCCh--hhHHHHHHHHhhccccCCCCCCC-
Q 013220          329 ALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSE--TDAREFAEFLVPLLDFTPEKRPT-  405 (447)
Q Consensus       329 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~ll~~~L~~dP~kRpt-  405 (447)
                                                               +..++...+.++.  +++.+++|||+++|.+||.+|+- 
T Consensus       344 -----------------------------------------l~NIv~~~l~Fp~~~~vs~~akDLIr~LLvKdP~kRlg~  382 (459)
T KOG0610|consen  344 -----------------------------------------LRNIVGQPLKFPEEPEVSSAAKDLIRKLLVKDPSKRLGS  382 (459)
T ss_pred             -----------------------------------------HHHHhcCCCcCCCCCcchhHHHHHHHHHhccChhhhhcc
Confidence                                                     2233333333333  56789999999999999999998 


Q ss_pred             ---hHHHhcCccccccc
Q 013220          406 ---AQQCLQHPWLSLRN  419 (447)
Q Consensus       406 ---a~elL~hp~f~~~~  419 (447)
                         |+||=+||||+..+
T Consensus       383 ~rGA~eIK~HpFF~gVn  399 (459)
T KOG0610|consen  383 KRGAAEIKRHPFFEGVN  399 (459)
T ss_pred             ccchHHhhcCccccCCC
Confidence               99999999999764

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2e-41  Score=334.59  Aligned_cols=243  Identities=29%  Similarity=0.435  Sum_probs=198.6

Q ss_pred             ecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEE
Q 013220           44 LGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCM  119 (447)
Q Consensus        44 lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~l  119 (447)
                      ||+|+||+||+|++..+++.||+|+++...    .....+..|+++++.+      +|+||+++++.+..    ....|+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~----~~~~~l   70 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQV------NCPFIVPLKFSFQS----PEKLYL   70 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhC------CCCcEeceeeEEec----CCeEEE
Confidence            699999999999999999999999886532    2345677899999988      88999999998874    368999


Q ss_pred             EEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCC
Q 013220          120 VLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER  198 (447)
Q Consensus       120 vmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~  198 (447)
                      ||||+ +++|.+.+...  ..+++..+..++.|++.||+|||++ ||+||||||+||++                     
T Consensus        71 v~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~i~HrDlkp~Nili---------------------  126 (312)
T cd05585          71 VLAFINGGELFHHLQRE--GRFDLSRARFYTAELLCALENLHKF-NVIYRDLKPENILL---------------------  126 (312)
T ss_pred             EEcCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeEeCCCCHHHeEE---------------------
Confidence            99999 88998888653  3589999999999999999999996 99999999999999                     


Q ss_pred             CCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc---cccccCCC
Q 013220          199 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEIQ  275 (447)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~---~~~~~~~g  275 (447)
                                                                         +..+.++|+|||++....   ......+|
T Consensus       127 ---------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~~~~~~g  155 (312)
T cd05585         127 ---------------------------------------------------DYQGHIALCDFGLCKLNMKDDDKTNTFCG  155 (312)
T ss_pred             ---------------------------------------------------CCCCcEEEEECcccccCccCCCccccccC
Confidence                                                               445679999999986432   12233578


Q ss_pred             CCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcc
Q 013220          276 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  355 (447)
Q Consensus       276 t~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  355 (447)
                      |+.|+|||++.+..++.++|||||||++|+|++|..||...+      .....                           
T Consensus       156 t~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~------~~~~~---------------------------  202 (312)
T cd05585         156 TPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDEN------VNEMY---------------------------  202 (312)
T ss_pred             CcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCCC------HHHHH---------------------------
Confidence            999999999999889999999999999999999999997542      11111                           


Q ss_pred             cchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC---ChHHHhcCccccccc
Q 013220          356 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP---TAQQCLQHPWLSLRN  419 (447)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp---ta~elL~hp~f~~~~  419 (447)
                                     ..+......++...+..+.+||.+||+.||++||   ++.++|+||||....
T Consensus       203 ---------------~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~~~~~~~e~l~hp~~~~~~  254 (312)
T cd05585         203 ---------------RKILQEPLRFPDGFDRDAKDLLIGLLSRDPTRRLGYNGAQEIKNHPFFSQLS  254 (312)
T ss_pred             ---------------HHHHcCCCCCCCcCCHHHHHHHHHHcCCCHHHcCCCCCHHHHHcCCCcCCCC
Confidence                           1111122234455677899999999999999997   589999999999763

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=1.2e-40  Score=328.95  Aligned_cols=293  Identities=26%  Similarity=0.362  Sum_probs=206.8

Q ss_pred             EEeecccCceEEEEEEeC--CCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEE
Q 013220           41 QRKLGWGQFSIVWLAYDT--RTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLC  118 (447)
Q Consensus        41 ~~~lG~G~~g~Vy~a~~~--~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~  118 (447)
                      .++||+|+||+||+|++.  .+++.||+|.+..... .....+|+++++.+      +|+||+++++.|...  .+...+
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~-~~~~~~E~~~l~~l------~h~niv~~~~~~~~~--~~~~~~   76 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGI-SMSACREIALLREL------KHPNVISLQKVFLSH--ADRKVW   76 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCCC-cHHHHHHHHHHHhc------CCCCCcceeeeEecC--CCcEEE
Confidence            357999999999999865  4678999998865432 34577899999999      789999999988654  346799


Q ss_pred             EEEecccccHHHHHHhhc-------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          119 MVLEFLGDSLLRLIKYSR-------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       119 lvmE~~~~~L~~~~~~~~-------~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                      ++|||+++++..++....       ...+++..++.++.||+.||+|||++ ||+||||||+|||+....          
T Consensus        77 lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~-~ivHrDlkp~Nil~~~~~----------  145 (317)
T cd07868          77 LLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN-WVLHRDLKPANILVMGEG----------  145 (317)
T ss_pred             EEEeccCCCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhC-CEEcCCCCHHHEEEecCC----------
Confidence            999999888888775322       12478899999999999999999996 999999999999994311          


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                .....+||+|||++......  
T Consensus       146 ----------------------------------------------------------~~~~~~kl~DfG~a~~~~~~~~  167 (317)
T cd07868         146 ----------------------------------------------------------PERGRVKIADMGFARLFNSPLK  167 (317)
T ss_pred             ----------------------------------------------------------CCcCcEEEeecCceeccCCCCc
Confidence                                                                      22457999999999754432  


Q ss_pred             ----cccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCC---CCchHHHHHHHHHhCCCCHH
Q 013220          270 ----FAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGF---CEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       270 ----~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~---~~~~~~~~~~~~~~g~~~~~  341 (447)
                          ....++|+.|+|||++.+. .++.++||||+||++|+|++|..||........   ......+..+....|..+..
T Consensus       168 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (317)
T cd07868         168 PLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADK  247 (317)
T ss_pred             cccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccCCcccccccccccHHHHHHHHHhcCCCChH
Confidence                2234689999999999874 578999999999999999999999976542211   12345666777777766543


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      ................+.... ..........+...   .......+.+||.+||++||++|||++|+|+||||
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~dli~~mL~~dP~~R~t~~e~l~hp~f  317 (317)
T cd07868         248 DWEDIKKMPEHSTLMKDFRRN-TYTNCSLIKYMEKH---KVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYF  317 (317)
T ss_pred             HhHHHhhccchhhhhhhhhcc-ccCcccccchHHhc---CCCCChHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence            321111100000000000000 00000011111110   01123467899999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=1.1e-40  Score=328.42  Aligned_cols=283  Identities=28%  Similarity=0.464  Sum_probs=217.8

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      .+|.+.++||+|+||+||+|++..++..||+|.++...  .....+.+|+++++.+      +|+||+++++++..    
T Consensus         6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~----   75 (309)
T cd07872           6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDL------KHANIVTLHDIVHT----   75 (309)
T ss_pred             CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhC------CCCCcceEEEEEee----
Confidence            57999999999999999999999999999999876432  2234567899999999      78999999999875    


Q ss_pred             cceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          114 GQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       114 ~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ....++||||+++++.+.+.... ..+++..+..++.|++.||+|||++ ||+||||||+||++                
T Consensus        76 ~~~~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~aL~~lH~~-~ivH~dlkp~Nill----------------  137 (309)
T cd07872          76 DKSLTLVFEYLDKDLKQYMDDCG-NIMSMHNVKIFLYQILRGLAYCHRR-KVLHRDLKPQNLLI----------------  137 (309)
T ss_pred             CCeEEEEEeCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEE----------------
Confidence            36899999999778887765432 3478899999999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---c
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---F  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~  270 (447)
                                                                              +....++|+|||++......   .
T Consensus       138 --------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~~  161 (309)
T cd07872         138 --------------------------------------------------------NERGELKLADFGLARAKSVPTKTY  161 (309)
T ss_pred             --------------------------------------------------------CCCCCEEECccccceecCCCcccc
Confidence                                                                    33567999999998654322   2


Q ss_pred             ccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 AEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      ....++..|+|||.+.+. .++.++|||||||++|+|++|+.||...      +....+..+.+.++..+..........
T Consensus       162 ~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (309)
T cd07872         162 SNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGS------TVEDELHLIFRLLGTPTEETWPGISSN  235 (309)
T ss_pred             ccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC------ChHHHHHHHHHHhCCCCHHHHhhhcch
Confidence            234678999999998764 5789999999999999999999999766      355677788888887776543222211


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccC
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~  420 (447)
                      ..+.. .      ....+ .......    ....++.++.+||.+||+.||++|||++|+|+||||+....
T Consensus       236 ~~~~~-~------~~~~~-~~~~~~~----~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h~~~~~~~~  294 (309)
T cd07872         236 DEFKN-Y------NFPKY-KPQPLIN----HAPRLDTEGIELLTKFLQYESKKRISAEEAMKHAYFRSLGT  294 (309)
T ss_pred             hhhhh-h------hcCcc-CCCchhh----hccCCCHHHHHHHHHhccCChhhCCCHHHHhcChhhhhccc
Confidence            11100 0      00000 0000000    11234668899999999999999999999999999997543

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.2e-42  Score=318.00  Aligned_cols=255  Identities=30%  Similarity=0.471  Sum_probs=209.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---------HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---------QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDH  106 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---------~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~  106 (447)
                      ..|.-.+.||.|..++|-+|.+..++..+|+|++....         ...+....|+.+|+.+.     +||+|+++.++
T Consensus        17 ~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~-----GHP~II~l~D~   91 (411)
T KOG0599|consen   17 AKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVM-----GHPYIIDLQDV   91 (411)
T ss_pred             hhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhc-----CCCcEEEeeee
Confidence            46888899999999999999999999999999865321         33456778999999997     99999999999


Q ss_pred             ccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCC
Q 013220          107 FKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK  185 (447)
Q Consensus       107 ~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~  185 (447)
                      |...    ..+++|+|.| .|.|++.+...-  .++++.++.+|+|+++|+.|||.+ +|||||+||+|||+        
T Consensus        92 yes~----sF~FlVFdl~prGELFDyLts~V--tlSEK~tR~iMrqlfegVeylHa~-~IVHRDLKpENILl--------  156 (411)
T KOG0599|consen   92 YESD----AFVFLVFDLMPRGELFDYLTSKV--TLSEKETRRIMRQLFEGVEYLHAR-NIVHRDLKPENILL--------  156 (411)
T ss_pred             ccCc----chhhhhhhhcccchHHHHhhhhe--eecHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhheee--------
Confidence            9854    6899999999 899999987654  499999999999999999999997 99999999999999        


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccc
Q 013220          186 DPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR  265 (447)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~  265 (447)
                                                                                      +.+.+++|+|||+++.
T Consensus       157 ----------------------------------------------------------------ddn~~i~isDFGFa~~  172 (411)
T KOG0599|consen  157 ----------------------------------------------------------------DDNMNIKISDFGFACQ  172 (411)
T ss_pred             ----------------------------------------------------------------ccccceEEeccceeec
Confidence                                                                            5578999999999987


Q ss_pred             ccc--ccccCCCCCCccChHHhhc------CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCC
Q 013220          266 ANK--QFAEEIQTRQYRAPEVILR------AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK  337 (447)
Q Consensus       266 ~~~--~~~~~~gt~~y~aPE~l~~------~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~  337 (447)
                      ...  .....|||+.|.|||.+.-      ..|+..+|+|++||+||.|+.|+.||...      .....+.++++  |+
T Consensus       173 l~~GekLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHR------kQmlMLR~Ime--Gk  244 (411)
T KOG0599|consen  173 LEPGEKLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHR------KQMLMLRMIME--GK  244 (411)
T ss_pred             cCCchhHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHH------HHHHHHHHHHh--cc
Confidence            653  3456699999999999862      24788999999999999999999999754      12333333332  11


Q ss_pred             CCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccc
Q 013220          338 MPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~  417 (447)
                      ..        ...+                            --.+++....|||++||+.||++|+|++|+|+||||.+
T Consensus       245 yq--------F~sp----------------------------eWadis~~~KdLIsrlLqVdp~~Ritake~LaHpff~q  288 (411)
T KOG0599|consen  245 YQ--------FRSP----------------------------EWADISATVKDLISRLLQVDPTKRITAKEALAHPFFIQ  288 (411)
T ss_pred             cc--------cCCc----------------------------chhhccccHHHHHHHHHeeCchhcccHHHHhcChHHHH
Confidence            10        0000                            01244778899999999999999999999999999964


Q ss_pred             c
Q 013220          418 R  418 (447)
Q Consensus       418 ~  418 (447)
                      .
T Consensus       289 ~  289 (411)
T KOG0599|consen  289 I  289 (411)
T ss_pred             H
Confidence            3

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.8e-41  Score=335.80  Aligned_cols=254  Identities=24%  Similarity=0.434  Sum_probs=205.0

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|.+.+.||+|+||+||+|++..+++.||+|+++...    .....+..|++++..+      .|++|++++.++..  
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i~~~~~~~~~--   72 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADA------DSPWIVKLYYSFQD--   72 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhc------CCCCccchhhheec--
Confidence            47999999999999999999999999999999987653    2345678899999998      79999999998874  


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                        +.+.++||||+ +++|.+.+...  ..+++..++.++.|++.||+|||+. ||+||||||+||++             
T Consensus        73 --~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~-giiH~Dlkp~NIll-------------  134 (350)
T cd05573          73 --EEHLYLVMEYMPGGDLMNLLIRK--DVFPEETARFYIAELVLALDSVHKL-GFIHRDIKPDNILI-------------  134 (350)
T ss_pred             --CCeEEEEEcCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCCHHHeEE-------------
Confidence              46899999999 88999888654  4589999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF  270 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~  270 (447)
                                                                                 +..+.++|+|||++.......
T Consensus       135 -----------------------------------------------------------~~~~~~kL~Dfg~~~~~~~~~  155 (350)
T cd05573         135 -----------------------------------------------------------DADGHIKLADFGLCKKMNKAK  155 (350)
T ss_pred             -----------------------------------------------------------CCCCCEEeecCCCCccCcccC
Confidence                                                                       445679999999986543221


Q ss_pred             --------------------------------ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCC
Q 013220          271 --------------------------------AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSG  318 (447)
Q Consensus       271 --------------------------------~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~  318 (447)
                                                      ....||+.|+|||++.+..++.++|||||||++|+|++|+.||...+ 
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~-  234 (350)
T cd05573         156 DREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDT-  234 (350)
T ss_pred             cccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCCC-
Confidence                                            23468999999999999999999999999999999999999997653 


Q ss_pred             CCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhcccc
Q 013220          319 QGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDF  398 (447)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~  398 (447)
                           .......+.......                                      ..+.....++.+.+||.+||. 
T Consensus       235 -----~~~~~~~i~~~~~~~--------------------------------------~~p~~~~~~~~~~~li~~ll~-  270 (350)
T cd05573         235 -----LQETYNKIINWKESL--------------------------------------RFPPDPPVSPEAIDLICRLLC-  270 (350)
T ss_pred             -----HHHHHHHHhccCCcc--------------------------------------cCCCCCCCCHHHHHHHHHHcc-
Confidence                 111111111100000                                      000111246789999999997 


Q ss_pred             CCCCCCC-hHHHhcCccccccc
Q 013220          399 TPEKRPT-AQQCLQHPWLSLRN  419 (447)
Q Consensus       399 dP~kRpt-a~elL~hp~f~~~~  419 (447)
                      ||.+||+ ++++|+||||+...
T Consensus       271 dp~~R~~s~~~ll~hp~~~~~~  292 (350)
T cd05573         271 DPEDRLGSFEEIKSHPFFKGID  292 (350)
T ss_pred             ChhhcCCCHHHHhcCCCcCCCC
Confidence            9999999 99999999998753

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=100.00  E-value=8.9e-42  Score=317.60  Aligned_cols=261  Identities=27%  Similarity=0.409  Sum_probs=219.6

Q ss_pred             CceEEEEe-ecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           36 GRYIAQRK-LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        36 ~~y~l~~~-lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      +.|.+..+ ||-|-.|.|-.|.++.+++.||+|++....    ..++|+++.-+..     .|+|||.++++|.+...+.
T Consensus        61 edY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds~----KARrEVeLHw~~s-----~h~~iV~IidVyeNs~~~r  131 (400)
T KOG0604|consen   61 EDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDSP----KARREVELHWMAS-----GHPHIVSIIDVYENSYQGR  131 (400)
T ss_pred             hhheehhhhhccccCCceEEEEeccchhhhHHHHHhcCH----HHHhHhhhhhhhc-----CCCceEEeehhhhhhccCc
Confidence            56777655 899999999999999999999999887554    4678999888875     8999999999999998888


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      .++.+|||.| ||.|++.+.......|.++++..|+.||..|+.|||+ ++|.||||||+|+|++.+             
T Consensus       132 kcLLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~-~nIAHRDlKpENLLyt~t-------------  197 (400)
T KOG0604|consen  132 KCLLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHS-MNIAHRDLKPENLLYTTT-------------  197 (400)
T ss_pred             eeeEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh-cchhhccCChhheeeecC-------------
Confidence            9999999999 9999999987777789999999999999999999999 599999999999999664             


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc--cccc
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQFA  271 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~--~~~~  271 (447)
                                                                              ..+..+||+|||+|+...  ....
T Consensus       198 --------------------------------------------------------~~na~lKLtDfGFAK~t~~~~~L~  221 (400)
T KOG0604|consen  198 --------------------------------------------------------SPNAPLKLTDFGFAKETQEPGDLM  221 (400)
T ss_pred             --------------------------------------------------------CCCcceEecccccccccCCCcccc
Confidence                                                                    345679999999998655  3445


Q ss_pred             cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccc
Q 013220          272 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  351 (447)
Q Consensus       272 ~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  351 (447)
                      ..+.|++|.|||++-...|+..+|+||+||+||-|+.|..||...-....  +...-                       
T Consensus       222 TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~ai--spgMk-----------------------  276 (400)
T KOG0604|consen  222 TPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI--SPGMK-----------------------  276 (400)
T ss_pred             CCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCCccC--ChhHH-----------------------
Confidence            56889999999999877899999999999999999999999987643221  11111                       


Q ss_pred             hhcccchhhhhhhcccCchhHHhhhhcCCCh----hhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          352 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSE----TDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                         .+|....+.||.    .++++..|+|+++|..+|++|.|++++++|||+....
T Consensus       277 -------------------~rI~~gqy~FP~pEWs~VSe~aKdlIR~LLkt~PteRlTI~~~m~hpwi~~~~  329 (400)
T KOG0604|consen  277 -------------------RRIRTGQYEFPEPEWSCVSEAAKDLIRKLLKTEPTERLTIEEVMDHPWINQYE  329 (400)
T ss_pred             -------------------hHhhccCccCCChhHhHHHHHHHHHHHHHhcCCchhheeHHHhhcCchhcccc
Confidence                               122223333333    5689999999999999999999999999999998754

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=8.4e-41  Score=331.82  Aligned_cols=251  Identities=25%  Similarity=0.360  Sum_probs=202.2

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      +|++.+.||+|+||.||+|++..+++.||+|++....    ...+.+..|.+++..+.     +|++|+++++++..   
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~-----~~~~i~~~~~~~~~---   72 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPG-----KPPFLTQLHSCFQT---   72 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcC-----CCCceeeeEEEEEc---
Confidence            4899999999999999999999999999999887543    23456777888888774     45678888888874   


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                       .+.+|+||||+ +++|...+...  ..+++..+..++.||+.||+|||++ ||+||||||+|||+              
T Consensus        73 -~~~~~lv~E~~~~g~L~~~~~~~--~~~~~~~~~~~~~qi~~al~~lH~~-~ivH~dlkp~Nill--------------  134 (324)
T cd05587          73 -MDRLYFVMEYVNGGDLMYHIQQV--GKFKEPHAVFYAAEIAIGLFFLHSK-GIIYRDLKLDNVML--------------  134 (324)
T ss_pred             -CCEEEEEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEecCCCHHHeEE--------------
Confidence             36899999999 88998887643  3488999999999999999999996 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc---c
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---K  268 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~---~  268 (447)
                                                                                +..+.++|+|||++....   .
T Consensus       135 ----------------------------------------------------------~~~~~~kL~Dfg~~~~~~~~~~  156 (324)
T cd05587         135 ----------------------------------------------------------DAEGHIKIADFGMCKENIFGGK  156 (324)
T ss_pred             ----------------------------------------------------------cCCCCEEEeecCcceecCCCCC
Confidence                                                                      345679999999986421   2


Q ss_pred             ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          269 QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       269 ~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      .....+||+.|+|||++.+..++.++|||||||++|+|++|+.||...+      .......+.                
T Consensus       157 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~------~~~~~~~i~----------------  214 (324)
T cd05587         157 TTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGED------EDELFQSIM----------------  214 (324)
T ss_pred             ceeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCC------HHHHHHHHH----------------
Confidence            2234578999999999999889999999999999999999999997542      111111111                


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCCh-----HHHhcCccccccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA-----QQCLQHPWLSLRN  419 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta-----~elL~hp~f~~~~  419 (447)
                                                .....++...+..+.+||.+||+.||.+|+++     +++++||||...+
T Consensus       215 --------------------------~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~hp~~~~~~  264 (324)
T cd05587         215 --------------------------EHNVSYPKSLSKEAVSICKGLLTKHPAKRLGCGPTGERDIREHAFFRRID  264 (324)
T ss_pred             --------------------------cCCCCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCCCcCCCC
Confidence                                      11122344456788999999999999999986     8999999998653

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=7e-41  Score=332.38  Aligned_cols=251  Identities=25%  Similarity=0.421  Sum_probs=202.5

Q ss_pred             eEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           38 YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        38 y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      |++.+.||+|+||.||+|.+..+++.||||+++...    ...+.+..|.+++..+...   .|+||+++++++..    
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l---~hp~i~~~~~~~~~----   73 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSE---RHPFLVNLFACFQT----   73 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcccc---CCCChhceeeEEEc----
Confidence            788999999999999999999999999999987543    2234667777777665432   79999999999874    


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      +...|+||||+ +++|...+..   ..+++..+..++.||+.||+|||+. ||+||||||+||++               
T Consensus        74 ~~~~~lv~E~~~~~~L~~~~~~---~~l~~~~~~~~~~qi~~al~~lH~~-~ivHrdlkp~Nill---------------  134 (324)
T cd05589          74 EDHVCFVMEYAAGGDLMMHIHT---DVFSEPRAVFYAACVVLGLQYLHEN-KIVYRDLKLDNLLL---------------  134 (324)
T ss_pred             CCEEEEEEcCCCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHhC-CeEecCCCHHHeEE---------------
Confidence            46899999999 7888776643   3589999999999999999999996 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc---cc
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQ  269 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~---~~  269 (447)
                                                                               +.++.+||+|||++....   ..
T Consensus       135 ---------------------------------------------------------~~~~~~kL~Dfg~~~~~~~~~~~  157 (324)
T cd05589         135 ---------------------------------------------------------DTEGFVKIADFGLCKEGMGFGDR  157 (324)
T ss_pred             ---------------------------------------------------------CCCCcEEeCcccCCccCCCCCCc
Confidence                                                                     445679999999886432   22


Q ss_pred             cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          270 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      ....+|++.|+|||.+.+..++.++|||||||++|+|++|..||...+      .......                   
T Consensus       158 ~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~------~~~~~~~-------------------  212 (324)
T cd05589         158 TSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDD------EEEVFDS-------------------  212 (324)
T ss_pred             ccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCC------HHHHHHH-------------------
Confidence            334578999999999998889999999999999999999999997542      1111111                   


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC-----ChHHHhcCccccccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRN  419 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp-----ta~elL~hp~f~~~~  419 (447)
                                             +......++...+..+.+||.+||+.||.+||     ++.++++||||+...
T Consensus       213 -----------------------i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~l~~~~~f~~~~  264 (324)
T cd05589         213 -----------------------IVNDEVRYPRFLSREAISIMRRLLRRNPERRLGSGEKDAEDVKKQPFFRDIN  264 (324)
T ss_pred             -----------------------HHhCCCCCCCCCCHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhhCCCcCCCC
Confidence                                   11112224445577889999999999999999     799999999998753

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=2e-40  Score=334.47  Aligned_cols=252  Identities=22%  Similarity=0.381  Sum_probs=199.3

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|++.+.||+|+||+||+|++..+++.||+|++....    .....+.+|+++++.+      +|++|+++++.+..  
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~------~~~~iv~~~~~~~~--   72 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEA------DSLWVVKMFYSFQD--   72 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhC------CCCCcceEEEEEec--
Confidence            36999999999999999999999999999999987543    2345677899999988      78999999998875  


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                        ...+|+||||| +++|.+.+...  ..+++..++.++.|++.||+|||++ ||+||||||+|||+             
T Consensus        73 --~~~~~lv~E~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~lH~~-givHrDlKp~NILi-------------  134 (363)
T cd05628          73 --KLNLYLIMEFLPGGDMMTLLMKK--DTLTEEETQFYIAETVLAIDSIHQL-GFIHRDIKPDNLLL-------------  134 (363)
T ss_pred             --CCeEEEEEcCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeEecCCCHHHeEE-------------
Confidence              36899999999 88999888654  4589999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-  269 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-  269 (447)
                                                                                 +..+.++|+|||++...... 
T Consensus       135 -----------------------------------------------------------~~~~~vkL~DFGla~~~~~~~  155 (363)
T cd05628         135 -----------------------------------------------------------DSKGHVKLSDFGLCTGLKKAH  155 (363)
T ss_pred             -----------------------------------------------------------CCCCCEEEeeccCcccccccc
Confidence                                                                       34567999999998643210 


Q ss_pred             -------------------------------------cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCC
Q 013220          270 -------------------------------------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDML  312 (447)
Q Consensus       270 -------------------------------------~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~P  312 (447)
                                                           ....+||+.|+|||++.+..++.++|||||||++|+|++|..|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~P  235 (363)
T cd05628         156 RTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPP  235 (363)
T ss_pred             cccccccccccccccccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCCC
Confidence                                                 1234799999999999998999999999999999999999999


Q ss_pred             CCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCCh--hhHHHHHH
Q 013220          313 FAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSE--TDAREFAE  390 (447)
Q Consensus       313 f~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~  390 (447)
                      |.+.+      .......+.....                                        ...++.  .+++++.+
T Consensus       236 f~~~~------~~~~~~~i~~~~~----------------------------------------~~~~p~~~~~s~~~~~  269 (363)
T cd05628         236 FCSET------PQETYKKVMNWKE----------------------------------------TLIFPPEVPISEKAKD  269 (363)
T ss_pred             CCCCC------HHHHHHHHHcCcC----------------------------------------cccCCCcCCCCHHHHH
Confidence            97542      1111111111000                                        000111  23567889


Q ss_pred             HHhhccccCCC---CCCChHHHhcCccccccc
Q 013220          391 FLVPLLDFTPE---KRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       391 ll~~~L~~dP~---kRpta~elL~hp~f~~~~  419 (447)
                      ||.+|+. +|.   .||+++|+++||||+...
T Consensus       270 li~~l~~-~~~~r~~r~~~~ei~~hp~f~~~~  300 (363)
T cd05628         270 LILRFCC-EWEHRIGAPGVEEIKTNPFFEGVD  300 (363)
T ss_pred             HHHHHcC-ChhhcCCCCCHHHHhCCCCCCCCC
Confidence            9998765 444   458999999999998753

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=4.6e-40  Score=327.59  Aligned_cols=290  Identities=21%  Similarity=0.338  Sum_probs=210.8

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      .++|++.++||+|+||.||+|++..++..||+|++...  ......+.+|+++++.+      +|+||+++++++...  
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~~--   75 (331)
T cd06649           4 DDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHEC------NSPYIVGFYGAFYSD--   75 (331)
T ss_pred             cccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHC------CCCCCCeEEEEEEEC--
Confidence            47899999999999999999999999999999987653  23356788999999999      789999999998753  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                        ...++||||+ +++|.+++...  ..+++..+..++.|++.||+|||++.+|+||||||+||++              
T Consensus        76 --~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~ivH~dlkp~Nil~--------------  137 (331)
T cd06649          76 --GEISICMEHMDGGSLDQVLKEA--KRIPEEILGKVSIAVLRGLAYLREKHQIMHRDVKPSNILV--------------  137 (331)
T ss_pred             --CEEEEEeecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHhhcCCEEcCCCChhhEEE--------------
Confidence              6899999999 88999888654  3488999999999999999999985369999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-c
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-F  270 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-~  270 (447)
                                                                                +....++|+|||++...... .
T Consensus       138 ----------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~  159 (331)
T cd06649         138 ----------------------------------------------------------NSRGEIKLCDFGVSGQLIDSMA  159 (331)
T ss_pred             ----------------------------------------------------------cCCCcEEEccCccccccccccc
Confidence                                                                      33567999999998654332 3


Q ss_pred             ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC---
Q 013220          271 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA---  347 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---  347 (447)
                      ....|+..|+|||.+.+..++.++|||||||++|+|++|+.||...+       ...   +...++...........   
T Consensus       160 ~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~~  229 (331)
T cd06649         160 NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPD-------AKE---LEAIFGRPVVDGEEGEPHSI  229 (331)
T ss_pred             ccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC-------HHH---HHHHhcccccccccCCcccc
Confidence            34578999999999998889999999999999999999999997543       111   22222221110000000   


Q ss_pred             --Ccc---chhcccchhhhhhhccc-CchhHHhhhh-cCC-ChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          348 --QSK---DYFDRHGDLKRIRRLKF-WSLDRLLVDK-YRF-SETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       348 --~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~-~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                        ...   ......+... ...... ...+.+.... ... ....+.++.+||.+||+.||++|||++|+|+||||+...
T Consensus       230 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~~P~~Rpt~~ell~h~~~~~~~  308 (331)
T cd06649         230 SPRPRPPGRPVSGHGMDS-RPAMAIFELLDYIVNEPPPKLPNGVFTPDFQEFVNKCLIKNPAERADLKMLMNHTFIKRSE  308 (331)
T ss_pred             Cccccccccccccccccc-ccchhHHHHHHHHHhCCCcCCCCccccHHHHHHHHHHccCCcccCCCHHHHhcChHHhhcc
Confidence              000   0000000000 000000 0011111111 111 113567899999999999999999999999999998654

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=1.9e-40  Score=335.52  Aligned_cols=284  Identities=29%  Similarity=0.472  Sum_probs=216.5

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      .|++.++||+|+||+||+|++..+++.||+|.+...   ......+.+|+++++.+      .|+||+++++++......
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~~~~~~~~~~~~   74 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFF------KHDNVLSALDILQPPHID   74 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhC------CCCCcCCHhheecCCCcc
Confidence            478899999999999999999999999999987542   23345788899999998      789999999998764211


Q ss_pred             -cceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 -GQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 -~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                       ...+|+||||++++|...+...  ..+++..++.++.||+.||+|||+. ||+||||||+||++               
T Consensus        75 ~~~~~~lv~e~~~~~l~~~~~~~--~~l~~~~~~~~~~qi~~aL~~LH~~-~ivH~dlkp~Nili---------------  136 (372)
T cd07853          75 PFEEIYVVTELMQSDLHKIIVSP--QPLSSDHVKVFLYQILRGLKYLHSA-GILHRDIKPGNLLV---------------  136 (372)
T ss_pred             ccceEEEEeeccccCHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhC-CeeCCCCChHHEEE---------------
Confidence             1378999999988888877543  3589999999999999999999996 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---  269 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---  269 (447)
                                                                               +..+.++|+|||++......   
T Consensus       137 ---------------------------------------------------------~~~~~~kL~Dfg~a~~~~~~~~~  159 (372)
T cd07853         137 ---------------------------------------------------------NSNCVLKICDFGLARVEEPDESK  159 (372)
T ss_pred             ---------------------------------------------------------CCCCCEEeccccceeecccCccc
Confidence                                                                     44567999999998654322   


Q ss_pred             -cccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          270 -FAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       270 -~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                       .....++..|+|||.+.+. .++.++|||||||++|+|++|+.||...      +....+..+.+.+|..+........
T Consensus       160 ~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~------~~~~~~~~i~~~~g~~~~~~~~~~~  233 (372)
T cd07853         160 HMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQ------SPIQQLDLITDLLGTPSLEAMRSAC  233 (372)
T ss_pred             cCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCC------CHHHHHHHHHHHcCCCCHHHHHHhh
Confidence             2334678999999999875 4789999999999999999999999766      3566778888888877654321110


Q ss_pred             -CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          348 -QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       348 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                       .....+...       ......    ...........++++.+||.+||+.||++|||++|+|+||||+..
T Consensus       234 ~~~~~~~~~~-------~~~~~~----~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~~  294 (372)
T cd07853         234 EGARAHILRG-------PHKPPS----LPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALAHPYLDEG  294 (372)
T ss_pred             HHHHHHHHhC-------CCCCCc----hHHhcccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhcCHhhCCC
Confidence             000000000       000000    001111233446788999999999999999999999999999874

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.1e-40  Score=336.02  Aligned_cols=252  Identities=23%  Similarity=0.402  Sum_probs=202.0

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      .+|++.+.||+|+||+||+|++..+++.||||+++...    .....+.+|+++++.+      +|+||+++++.|..  
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l------~h~~iv~~~~~~~~--   72 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEA------DNPWVVKLYYSFQD--   72 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhC------CCCCCcceEEEEEc--
Confidence            36999999999999999999999999999999987543    3345677899999998      79999999999885  


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                        +.+.|+||||| +++|.+++...  ..+++..++.++.|++.||+|||++ ||+||||||+|||+             
T Consensus        73 --~~~~~lv~E~~~~g~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~lH~~-~ivH~Dlkp~NIl~-------------  134 (364)
T cd05599          73 --ENYLYLIMEYLPGGDMMTLLMKK--DTFTEEETRFYIAETILAIDSIHKL-GYIHRDIKPDNLLL-------------  134 (364)
T ss_pred             --CCeEEEEECCCCCcHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEeccCCHHHeEE-------------
Confidence              47899999999 88998888654  3589999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-  269 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-  269 (447)
                                                                                 +.++.++|+|||++...... 
T Consensus       135 -----------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~  155 (364)
T cd05599         135 -----------------------------------------------------------DAKGHIKLSDFGLCTGLKKSH  155 (364)
T ss_pred             -----------------------------------------------------------CCCCCEEEeecccceeccccc
Confidence                                                                       44677999999988543210 


Q ss_pred             ----------------------------------------cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhC
Q 013220          270 ----------------------------------------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATG  309 (447)
Q Consensus       270 ----------------------------------------~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g  309 (447)
                                                              ....+||+.|+|||++.+..++.++|||||||++|+|++|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G  235 (364)
T cd05599         156 RTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVG  235 (364)
T ss_pred             cccccccccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhhcC
Confidence                                                    0123689999999999988899999999999999999999


Q ss_pred             CCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCC--hhhHHH
Q 013220          310 DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFS--ETDARE  387 (447)
Q Consensus       310 ~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  387 (447)
                      ..||...+      .......+...    .                                    ....++  ...+++
T Consensus       236 ~~Pf~~~~------~~~~~~~i~~~----~------------------------------------~~~~~~~~~~~s~~  269 (364)
T cd05599         236 YPPFCSDN------PQETYRKIINW----K------------------------------------ETLQFPDEVPLSPE  269 (364)
T ss_pred             CCCCCCCC------HHHHHHHHHcC----C------------------------------------CccCCCCCCCCCHH
Confidence            99997552      11111111100    0                                    000011  123568


Q ss_pred             HHHHHhhccccCCCCCCC---hHHHhcCccccccc
Q 013220          388 FAEFLVPLLDFTPEKRPT---AQQCLQHPWLSLRN  419 (447)
Q Consensus       388 l~~ll~~~L~~dP~kRpt---a~elL~hp~f~~~~  419 (447)
                      +.+||.+||. +|.+|++   ++|+|+||||+...
T Consensus       270 ~~~li~~ll~-~p~~R~~~~~~~~ll~h~~~~~~~  303 (364)
T cd05599         270 AKDLIKRLCC-EAERRLGNNGVNEIKSHPFFKGVD  303 (364)
T ss_pred             HHHHHHHHcc-CHhhcCCCCCHHHHhcCCCcCCCC
Confidence            8899999996 9999998   99999999998653

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=6.8e-41  Score=333.27  Aligned_cols=244  Identities=28%  Similarity=0.444  Sum_probs=198.6

Q ss_pred             EeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceE
Q 013220           42 RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHL  117 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~  117 (447)
                      +.||+|+||.||+|++..++..||+|++....    .....+.+|+++++.+      .|++|++++..+..    ...+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~~~~~~----~~~~   70 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNT------RHPFLTSLKYSFQT----KDRL   70 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhC------CCCCCcceEEEEEc----CCEE
Confidence            36899999999999999999999999887542    2345677899999888      78999999988874    4689


Q ss_pred             EEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCc
Q 013220          118 CMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL  196 (447)
Q Consensus       118 ~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~  196 (447)
                      |+||||+ +++|...+...  ..+++..++.++.||+.||+|||++ ||+||||||+|||+                   
T Consensus        71 ~lv~Ey~~~g~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~~-~ivHrDikp~NIll-------------------  128 (328)
T cd05593          71 CFVMEYVNGGELFFHLSRE--RVFSEDRTRFYGAEIVSALDYLHSG-KIVYRDLKLENLML-------------------  128 (328)
T ss_pred             EEEEeCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeEecccCHHHeEE-------------------
Confidence            9999999 88888777543  3589999999999999999999996 99999999999999                   


Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc---ccccC
Q 013220          197 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEE  273 (447)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~---~~~~~  273 (447)
                                                                           +..+.+||+|||++.....   .....
T Consensus       129 -----------------------------------------------------~~~~~~kL~DfG~~~~~~~~~~~~~~~  155 (328)
T cd05593         129 -----------------------------------------------------DKDGHIKITDFGLCKEGITDAATMKTF  155 (328)
T ss_pred             -----------------------------------------------------CCCCcEEEecCcCCccCCCcccccccc
Confidence                                                                 3456799999999864321   22335


Q ss_pred             CCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchh
Q 013220          274 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  353 (447)
Q Consensus       274 ~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  353 (447)
                      +||+.|+|||++.+..++.++|||||||++|+|++|..||...+      .......                       
T Consensus       156 ~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~------~~~~~~~-----------------------  206 (328)
T cd05593         156 CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD------HEKLFEL-----------------------  206 (328)
T ss_pred             cCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCCC------HHHHHHH-----------------------
Confidence            78999999999998889999999999999999999999996542      1111111                       


Q ss_pred             cccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC-----ChHHHhcCcccccc
Q 013220          354 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLR  418 (447)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp-----ta~elL~hp~f~~~  418 (447)
                                         +......++...+..+.+||.+||+.||++|+     ++.|+++||||...
T Consensus       207 -------------------~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h~~~~~~  257 (328)
T cd05593         207 -------------------ILMEDIKFPRTLSADAKSLLSGLLIKDPNKRLGGGPDDAKEIMRHSFFTGV  257 (328)
T ss_pred             -------------------hccCCccCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHhcCCCcCCC
Confidence                               11112224455677899999999999999997     89999999999864

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=9.4e-42  Score=328.03  Aligned_cols=248  Identities=25%  Similarity=0.422  Sum_probs=211.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      .||.+.+.||+|+||.|-+|+....|+.||||.+++++    ...-.+.+|++++..|      +||||+.+|.+|... 
T Consensus        53 HRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsL------NHPhII~IyEVFENk-  125 (668)
T KOG0611|consen   53 HRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSL------NHPHIIQIYEVFENK-  125 (668)
T ss_pred             hHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhc------CCCceeehhhhhcCC-
Confidence            68999999999999999999998999999999888764    3344788999999999      999999999999854 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                         +.+.|||||. +|.|++++....  .+++.+++.+++||+.|+.|||.+ +++|||+|.+|||+             
T Consensus       126 ---dKIvivMEYaS~GeLYDYiSer~--~LsErEaRhfFRQIvSAVhYCHkn-rVvHRDLKLENILL-------------  186 (668)
T KOG0611|consen  126 ---DKIVIVMEYASGGELYDYISERG--SLSEREARHFFRQIVSAVHYCHKN-RVVHRDLKLENILL-------------  186 (668)
T ss_pred             ---ceEEEEEEecCCccHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHhhc-cceecccchhheee-------------
Confidence               8999999999 999999998654  499999999999999999999997 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc--c
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--K  268 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~--~  268 (447)
                                                                                 +.++++|++|||++..+.  .
T Consensus       187 -----------------------------------------------------------D~N~NiKIADFGLSNly~~~k  207 (668)
T KOG0611|consen  187 -----------------------------------------------------------DQNNNIKIADFGLSNLYADKK  207 (668)
T ss_pred             -----------------------------------------------------------cCCCCeeeeccchhhhhcccc
Confidence                                                                       667899999999996554  3


Q ss_pred             ccccCCCCCCccChHHhhcCCC-CccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          269 QFAEEIQTRQYRAPEVILRAGY-SFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       269 ~~~~~~gt~~y~aPE~l~~~~~-~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                      ....+||++-|.+||++.+.+| ++.+|-|||||+||.|+.|.+||.+.+      ....+.++.               
T Consensus       208 fLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~D------hk~lvrQIs---------------  266 (668)
T KOG0611|consen  208 FLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRD------HKRLVRQIS---------------  266 (668)
T ss_pred             HHHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCch------HHHHHHHhh---------------
Confidence            4567899999999999999999 589999999999999999999998764      111111111               


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccc
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~  417 (447)
                                                 ... -...+.+..+.-||+.||..||++|.|+.++..|=|+.-
T Consensus       267 ---------------------------~Ga-YrEP~~PSdA~gLIRwmLmVNP~RRATieDiAsHWWvNw  308 (668)
T KOG0611|consen  267 ---------------------------RGA-YREPETPSDASGLIRWMLMVNPERRATIEDIASHWWVNW  308 (668)
T ss_pred             ---------------------------ccc-ccCCCCCchHHHHHHHHHhcCcccchhHHHHhhhheeec
Confidence                                       000 112233556778999999999999999999999988764

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=8.8e-41  Score=331.29  Aligned_cols=246  Identities=27%  Similarity=0.429  Sum_probs=198.2

Q ss_pred             EeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceE
Q 013220           42 RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHL  117 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~  117 (447)
                      +.||+|+||+||+|++..+++.||+|+++...    .....+..|.+++..+.     +|++|+++++++..    ...+
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~-----~h~~iv~~~~~~~~----~~~~   71 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLAR-----NHPFLTQLYCCFQT----PDRL   71 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcc-----CCCchhceeeEEEc----CCEE
Confidence            36899999999999999999999999887543    22345667888877664     79999999999875    4689


Q ss_pred             EEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCc
Q 013220          118 CMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL  196 (447)
Q Consensus       118 ~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~  196 (447)
                      |+||||+ +++|...+...  ..+++..+..++.|++.||+|||++ ||+||||||+||++                   
T Consensus        72 ~iv~Ey~~~g~L~~~i~~~--~~l~~~~~~~~~~ql~~~L~~lH~~-~ivH~dlkp~NIli-------------------  129 (320)
T cd05590          72 FFVMEFVNGGDLMFHIQKS--RRFDEARARFYAAEITSALMFLHDK-GIIYRDLKLDNVLL-------------------  129 (320)
T ss_pred             EEEEcCCCCchHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEeCCCCHHHeEE-------------------
Confidence            9999999 78888877644  3589999999999999999999996 99999999999999                   


Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc---cccccC
Q 013220          197 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEE  273 (447)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~---~~~~~~  273 (447)
                                                                           +....++|+|||++....   ......
T Consensus       130 -----------------------------------------------------~~~~~~kL~DfG~~~~~~~~~~~~~~~  156 (320)
T cd05590         130 -----------------------------------------------------DHEGHCKLADFGMCKEGIFNGKTTSTF  156 (320)
T ss_pred             -----------------------------------------------------CCCCcEEEeeCCCCeecCcCCCccccc
Confidence                                                                 345679999999986432   223345


Q ss_pred             CCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchh
Q 013220          274 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  353 (447)
Q Consensus       274 ~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  353 (447)
                      .||+.|+|||++.+..++.++|||||||++|+|++|..||...+      .......+                      
T Consensus       157 ~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~------~~~~~~~i----------------------  208 (320)
T cd05590         157 CGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAEN------EDDLFEAI----------------------  208 (320)
T ss_pred             ccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCC------HHHHHHHH----------------------
Confidence            78999999999998889999999999999999999999997542      11111111                      


Q ss_pred             cccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCCh------HHHhcCccccccc
Q 013220          354 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA------QQCLQHPWLSLRN  419 (447)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta------~elL~hp~f~~~~  419 (447)
                                          ......++...+.++.+||.+||+.||++||++      +++++||||+...
T Consensus       209 --------------------~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~~~~h~~f~~~~  260 (320)
T cd05590         209 --------------------LNDEVVYPTWLSQDAVDILKAFMTKNPTMRLGSLTLGGEEAILRHPFFKELD  260 (320)
T ss_pred             --------------------hcCCCCCCCCCCHHHHHHHHHHcccCHHHCCCCCCCCCHHHHHcCCCcCCCC
Confidence                                111112333456788999999999999999998      9999999998653

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=3.1e-40  Score=335.16  Aligned_cols=254  Identities=23%  Similarity=0.364  Sum_probs=198.9

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      .|++.++||+|+||+||+|++..+++.||+|++....    .....+.+|+++++.+      +|++|+++++++..   
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l------~h~~iv~l~~~~~~---   72 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEA------DNEWVVKLYYSFQD---   72 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhc------CCCCeeeeEEEEec---
Confidence            6999999999999999999999999999999886543    2345688899999998      78999999999885   


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                       ...+|+||||+ +++|.+++...  ..+++..++.++.||+.||+|||+. ||+||||||+|||+              
T Consensus        73 -~~~~~lv~E~~~gg~L~~~l~~~--~~~~e~~~~~~~~qi~~aL~~LH~~-givHrDlKp~Nili--------------  134 (381)
T cd05626          73 -KDNLYFVMDYIPGGDMMSLLIRM--EVFPEVLARFYIAELTLAIESVHKM-GFIHRDIKPDNILI--------------  134 (381)
T ss_pred             -CCEEEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeeecCCcHHHEEE--------------
Confidence             36899999999 88998888654  3488999999999999999999996 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc---
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---  268 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~---  268 (447)
                                                                                +..+.++|+|||++.....   
T Consensus       135 ----------------------------------------------------------~~~~~~kL~DFGl~~~~~~~~~  156 (381)
T cd05626         135 ----------------------------------------------------------DLDGHIKLTDFGLCTGFRWTHN  156 (381)
T ss_pred             ----------------------------------------------------------CCCCCEEEeeCcCCcccccccc
Confidence                                                                      3356799999998642110   


Q ss_pred             -----------------------------------------------ccccCCCCCCccChHHhhcCCCCccchhHhHHH
Q 013220          269 -----------------------------------------------QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFAC  301 (447)
Q Consensus       269 -----------------------------------------------~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGv  301 (447)
                                                                     .....+||+.|+|||++.+..++.++|||||||
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~  236 (381)
T cd05626         157 SKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGV  236 (381)
T ss_pred             cccccccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccceeehhh
Confidence                                                           001246899999999999888999999999999


Q ss_pred             HHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCC
Q 013220          302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFS  381 (447)
Q Consensus       302 il~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (447)
                      ++|+|++|..||...+      .......+........                                      ....
T Consensus       237 il~elltG~~Pf~~~~------~~~~~~~i~~~~~~~~--------------------------------------~~~~  272 (381)
T cd05626         237 ILFEMLVGQPPFLAPT------PTETQLKVINWENTLH--------------------------------------IPPQ  272 (381)
T ss_pred             HHHHHHhCCCCCcCCC------HHHHHHHHHccccccC--------------------------------------CCCC
Confidence            9999999999997652      1111111110000000                                      0011


Q ss_pred             hhhHHHHHHHHhhccc--cCCCCCCChHHHhcCccccccc
Q 013220          382 ETDAREFAEFLVPLLD--FTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       382 ~~~~~~l~~ll~~~L~--~dP~kRpta~elL~hp~f~~~~  419 (447)
                      ..++.++.+||.+||.  .+|..|++++++++||||+...
T Consensus       273 ~~~s~~~~dli~~ll~~~~~~~~R~~~~~~l~hp~f~~~~  312 (381)
T cd05626         273 VKLSPEAVDLITKLCCSAEERLGRNGADDIKAHPFFSEVD  312 (381)
T ss_pred             CCCCHHHHHHHHHHccCcccccCCCCHHHHhcCcccCCCC
Confidence            1346688899999654  4555599999999999998643

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.2e-40  Score=335.69  Aligned_cols=252  Identities=24%  Similarity=0.379  Sum_probs=199.1

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|++.++||+|+||+||+|++..+++.||+|++....    .....+.+|+++++.+      +|+||++++++|..  
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l------~hp~iv~~~~~~~~--   72 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAES------DSPWVVSLYYSFQD--   72 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhC------CCCCcceEEEEEEc--
Confidence            36999999999999999999999999999999876543    2345678899999888      88999999999875  


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                        ..++|+||||+ +++|.+.+...  ..+++..++.++.|++.||+|||+. ||+||||||+|||+             
T Consensus        73 --~~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~ql~~aL~~LH~~-givHrDlkp~NIll-------------  134 (377)
T cd05629          73 --AQYLYLIMEFLPGGDLMTMLIKY--DTFSEDVTRFYMAECVLAIEAVHKL-GFIHRDIKPDNILI-------------  134 (377)
T ss_pred             --CCeeEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCHHHEEE-------------
Confidence              46899999999 88999888643  4589999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-  269 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-  269 (447)
                                                                                 +....++|+|||++...... 
T Consensus       135 -----------------------------------------------------------~~~~~~kl~DfGla~~~~~~~  155 (377)
T cd05629         135 -----------------------------------------------------------DRGGHIKLSDFGLSTGFHKQH  155 (377)
T ss_pred             -----------------------------------------------------------CCCCCEEEeeccccccccccc
Confidence                                                                       33567999999988421100 


Q ss_pred             -------------------------------------------------cccCCCCCCccChHHhhcCCCCccchhHhHH
Q 013220          270 -------------------------------------------------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFA  300 (447)
Q Consensus       270 -------------------------------------------------~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlG  300 (447)
                                                                       ....+||+.|+|||++.+..++.++||||||
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG  235 (377)
T cd05629         156 DSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLG  235 (377)
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeEecc
Confidence                                                             0124689999999999988899999999999


Q ss_pred             HHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCC
Q 013220          301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRF  380 (447)
Q Consensus       301 vil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (447)
                      |++|+|++|..||...+      .......+...    ..                                    ...+
T Consensus       236 vil~elltG~~Pf~~~~------~~~~~~~i~~~----~~------------------------------------~~~~  269 (377)
T cd05629         236 AIMFECLIGWPPFCSEN------SHETYRKIINW----RE------------------------------------TLYF  269 (377)
T ss_pred             hhhhhhhcCCCCCCCCC------HHHHHHHHHcc----CC------------------------------------ccCC
Confidence            99999999999996542      11111111110    00                                    0001


Q ss_pred             C--hhhHHHHHHHHhhccccCCCCC---CChHHHhcCccccccc
Q 013220          381 S--ETDAREFAEFLVPLLDFTPEKR---PTAQQCLQHPWLSLRN  419 (447)
Q Consensus       381 ~--~~~~~~l~~ll~~~L~~dP~kR---pta~elL~hp~f~~~~  419 (447)
                      +  ...+.++.+||.+||+ +|.+|   +|+.|+++||||+..+
T Consensus       270 p~~~~~s~~~~dli~~lL~-~~~~r~~r~~~~~~l~hp~~~~~~  312 (377)
T cd05629         270 PDDIHLSVEAEDLIRRLIT-NAENRLGRGGAHEIKSHPFFRGVD  312 (377)
T ss_pred             CCCCCCCHHHHHHHHHHhc-CHhhcCCCCCHHHHhcCCCcCCCC
Confidence            1  1235688899999997 77775   5999999999998643

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>PHA03209 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=3.1e-40  Score=332.41  Aligned_cols=289  Identities=24%  Similarity=0.296  Sum_probs=208.2

Q ss_pred             cccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           32 LFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        32 ~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      .+....|++.+.||+|+||.||+|++..++..||+|+....     ....|+.+++.+      +|+||+++++++... 
T Consensus        62 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~-----~~~~E~~~l~~l------~h~~iv~~~~~~~~~-  129 (357)
T PHA03209         62 VVASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG-----TTLIEAMLLQNV------NHPSVIRMKDTLVSG-  129 (357)
T ss_pred             hhhhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc-----ccHHHHHHHHhC------CCCCCcChhheEEeC-
Confidence            44456799999999999999999999999999999975433     235689999998      789999999998753 


Q ss_pred             CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          112 PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       112 ~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                         ...++|||++.++|.+++.... ..+++..+..++.||+.||+|||+. ||+||||||+||++              
T Consensus       130 ---~~~~lv~e~~~~~l~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~-~ivHrDlkp~Nill--------------  190 (357)
T PHA03209        130 ---AITCMVLPHYSSDLYTYLTKRS-RPLPIDQALIIEKQILEGLRYLHAQ-RIIHRDVKTENIFI--------------  190 (357)
T ss_pred             ---CeeEEEEEccCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEE--------------
Confidence               6899999999888888775432 4589999999999999999999996 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc--c
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--Q  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~--~  269 (447)
                                                                                +....++|+|||.+.....  .
T Consensus       191 ----------------------------------------------------------~~~~~~kl~DfG~a~~~~~~~~  212 (357)
T PHA03209        191 ----------------------------------------------------------NDVDQVCIGDLGAAQFPVVAPA  212 (357)
T ss_pred             ----------------------------------------------------------CCCCCEEEecCccccccccCcc
Confidence                                                                      3356799999999864322  2


Q ss_pred             cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCC----CCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          270 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQG----FCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                      .....||..|+|||++.+..++.++|||||||++|+|+++..|+.......    .......+..+...++..|..+...
T Consensus       213 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  292 (357)
T PHA03209        213 FLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTIFEDPPSTPEEYVKSCHSHLLKIISTLKVHPEEFPRD  292 (357)
T ss_pred             cccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCccccCCCCcHHHHHHHHHHHHHHHHHHhccChhhcCCC
Confidence            234568999999999998889999999999999999998655544332111    0122334445555556555544211


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccc
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~  417 (447)
                      ...  .......+........+......      .....+..+.+||.+||+.||++||||+|+|+||||+.
T Consensus       293 ~~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~li~~mL~~dP~~Rpta~e~l~hp~f~~  356 (357)
T PHA03209        293 PGS--RLVRGFIEYASLERQPYTRYPCF------QRVNLPIDGEFLVHKMLTFDAAMRPSAEEILNYPMFAQ  356 (357)
T ss_pred             Ccc--HHHHHHHhhcccCCCcccccHHH------hccCCCchHHHHHHHHHcCCcccCcCHHHHhcCchhcc
Confidence            000  00000000000000000000000      01123557778999999999999999999999999985

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=1.1e-40  Score=331.01  Aligned_cols=245  Identities=27%  Similarity=0.442  Sum_probs=199.0

Q ss_pred             EeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceE
Q 013220           42 RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHL  117 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~  117 (447)
                      +.||+|+||.||+|++..++..||+|+++...    .....+.+|+++++.+      .|+||+++++.|...    ..+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l------~hp~i~~~~~~~~~~----~~~   70 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNT------RHPFLTALKYAFQTH----DRL   70 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhC------CCCCCcceeeEEecC----CEE
Confidence            36899999999999999999999999887543    2334567799999988      789999999988753    689


Q ss_pred             EEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCc
Q 013220          118 CMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL  196 (447)
Q Consensus       118 ~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~  196 (447)
                      |+||||+ +++|...+...  ..+++..++.++.||+.||+|||++ ||+||||||+||++                   
T Consensus        71 ~lv~E~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-~ivH~Dlkp~NIll-------------------  128 (323)
T cd05595          71 CFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSALEYLHSR-DVVYRDIKLENLML-------------------  128 (323)
T ss_pred             EEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEecCCCHHHEEE-------------------
Confidence            9999999 88888777543  3589999999999999999999996 99999999999999                   


Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc---ccccC
Q 013220          197 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEE  273 (447)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~---~~~~~  273 (447)
                                                                           +....++|+|||++.....   .....
T Consensus       129 -----------------------------------------------------~~~~~~kL~Dfg~~~~~~~~~~~~~~~  155 (323)
T cd05595         129 -----------------------------------------------------DKDGHIKITDFGLCKEGISDGATMKTF  155 (323)
T ss_pred             -----------------------------------------------------cCCCCEEecccHHhccccCCCCccccc
Confidence                                                                 3456799999998864321   22335


Q ss_pred             CCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchh
Q 013220          274 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  353 (447)
Q Consensus       274 ~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  353 (447)
                      .|++.|+|||++.+..++.++|||||||++|+|++|..||...+      .......                       
T Consensus       156 ~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~------~~~~~~~-----------------------  206 (323)
T cd05595         156 CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD------HERLFEL-----------------------  206 (323)
T ss_pred             cCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCC------HHHHHHH-----------------------
Confidence            68999999999998889999999999999999999999996542      1111111                       


Q ss_pred             cccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC-----ChHHHhcCccccccc
Q 013220          354 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRN  419 (447)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp-----ta~elL~hp~f~~~~  419 (447)
                                         +......++...++++.+||.+||+.||++|+     ++.++++||||....
T Consensus       207 -------------------~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~l~h~~~~~~~  258 (323)
T cd05595         207 -------------------ILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSIN  258 (323)
T ss_pred             -------------------HhcCCCCCCCCCCHHHHHHHHHHccCCHHHhCCCCCCCHHHHHcCCCcCCCC
Confidence                               11112234455677899999999999999998     899999999998643

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.4e-41  Score=307.81  Aligned_cols=252  Identities=27%  Similarity=0.437  Sum_probs=219.0

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|.+.+.||.|.||.||+|+.+.++-.||+|++.+..    ...+++.+|+++...|      .||||+++|++|.+. 
T Consensus        22 ~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L------~hpnilrlY~~fhd~-   94 (281)
T KOG0580|consen   22 DDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHL------RHPNILRLYGYFHDS-   94 (281)
T ss_pred             hhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeeccc------CCccHHhhhhheecc-
Confidence            68999999999999999999999999999999876654    2345788888888888      899999999999976 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                         ...|+++||. .|.++..+...+...+++..+..+++|++.||.|||.+ ++|||||||+|+|+             
T Consensus        95 ---~riyLilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k-~VIhRdiKpenlLl-------------  157 (281)
T KOG0580|consen   95 ---KRIYLILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLK-RVIHRDIKPENLLL-------------  157 (281)
T ss_pred             ---ceeEEEEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccC-CcccCCCCHHHhcc-------------
Confidence               7899999999 89999999877777799999999999999999999997 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc-cc
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN-KQ  269 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~-~~  269 (447)
                                                                                 ...+.+|++|||.+.... ..
T Consensus       158 -----------------------------------------------------------g~~~~lkiAdfGwsV~~p~~k  178 (281)
T KOG0580|consen  158 -----------------------------------------------------------GSAGELKIADFGWSVHAPSNK  178 (281)
T ss_pred             -----------------------------------------------------------CCCCCeeccCCCceeecCCCC
Confidence                                                                       446789999999997553 34


Q ss_pred             cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          270 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      ....|||.-|.+||+..+..++..+|+|++|++.|+++.|..||...+..      ..                      
T Consensus       179 R~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~~------et----------------------  230 (281)
T KOG0580|consen  179 RKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSHS------ET----------------------  230 (281)
T ss_pred             ceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhhhH------HH----------------------
Confidence            45679999999999999999999999999999999999999999765311      11                      


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                                          ..++..-+..+|+.++..+.|+|.+||..+|.+|.+..|++.|||+...
T Consensus       231 --------------------YkrI~k~~~~~p~~is~~a~dlI~~ll~~~p~~r~~l~~v~~hpwI~a~  279 (281)
T KOG0580|consen  231 --------------------YKRIRKVDLKFPSTISGGAADLISRLLVKNPIERLALTEVMDHPWIVAN  279 (281)
T ss_pred             --------------------HHHHHHccccCCcccChhHHHHHHHHhccCccccccHHHHhhhHHHHhc
Confidence                                2333344455778889999999999999999999999999999999743

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=4.2e-40  Score=327.69  Aligned_cols=255  Identities=26%  Similarity=0.372  Sum_probs=201.4

Q ss_pred             ceEEEEeecccCceEEEEEEeC---CCCeEEEEEEechhH-----HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDT---RTSSYVALKIQKSAA-----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~---~~~~~vaiK~~~~~~-----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      +|++.++||+|+||+||++++.   .++..||+|++....     ...+.+..|+++++.+.     +|++|++++..+.
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~-----~~~~i~~~~~~~~   75 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVR-----QSPFLVTLHYAFQ   75 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhcc-----CCCCcccEEEEEe
Confidence            4899999999999999999764   468999999886532     23446778999998885     6899999998887


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCc
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                      .    ...+++||||+ +++|.+.+...  ..+++..+..++.||+.||+|||++ ||+||||||+|||+          
T Consensus        76 ~----~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~ivHrDlkp~Nili----------  138 (332)
T cd05614          76 T----EAKLHLILDYVSGGEMFTHLYQR--DNFSEDEVRFYSGEIILALEHLHKL-GIVYRDIKLENILL----------  138 (332)
T ss_pred             c----CCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CcEecCCCHHHeEE----------
Confidence            4    36899999999 88998887643  3489999999999999999999996 99999999999999          


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                    +.++.++|+|||++....
T Consensus       139 --------------------------------------------------------------~~~~~~kl~DfG~~~~~~  156 (332)
T cd05614         139 --------------------------------------------------------------DSEGHVVLTDFGLSKEFL  156 (332)
T ss_pred             --------------------------------------------------------------CCCCCEEEeeCcCCcccc
Confidence                                                                          345679999999986432


Q ss_pred             c----ccccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh
Q 013220          268 K----QFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  342 (447)
Q Consensus       268 ~----~~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (447)
                      .    .....+||..|+|||++.+. .++.++|||||||++|+|++|..||.......   ....   +.          
T Consensus       157 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~---~~~~---~~----------  220 (332)
T cd05614         157 SEEKERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERN---TQSE---VS----------  220 (332)
T ss_pred             ccCCCccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCCCCC---CHHH---HH----------
Confidence            1    12234789999999999875 47889999999999999999999996542111   0000   00          


Q ss_pred             hhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC-----ChHHHhcCccccc
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSL  417 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp-----ta~elL~hp~f~~  417 (447)
                                                  ..+....+.++...+..+.+||.+||+.||++||     +++++++||||+.
T Consensus       221 ----------------------------~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h~~~~~  272 (332)
T cd05614         221 ----------------------------RRILKCDPPFPSFIGPEAQDLLHKLLRKDPKKRLGAGPQGASEIKEHPFFKG  272 (332)
T ss_pred             ----------------------------HHHhcCCCCCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHHcCCCcCC
Confidence                                        0111112234455677899999999999999999     7889999999987


Q ss_pred             cc
Q 013220          418 RN  419 (447)
Q Consensus       418 ~~  419 (447)
                      ..
T Consensus       273 ~~  274 (332)
T cd05614         273 LD  274 (332)
T ss_pred             CC
Confidence            53

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=3.3e-40  Score=335.01  Aligned_cols=253  Identities=25%  Similarity=0.394  Sum_probs=200.1

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      +|.+.++||+|+||+||+|++..+++.||+|++....    .....+.+|+++++.+      +|++|+++++.|..   
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~------~h~~iv~~~~~~~~---   72 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEA------DNEWVVRLYYSFQD---   72 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhC------CCCcCCeEEEEEEe---
Confidence            6999999999999999999999999999999887543    2345788899999998      78999999999875   


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                       +..+|+||||| +++|.+.+...  ..+++..++.++.||+.||+|||+. ||+||||||+|||+              
T Consensus        73 -~~~~~lv~E~~~gg~L~~~l~~~--~~~~e~~~~~~~~qi~~al~~lH~~-~ivHrDlKp~NILl--------------  134 (382)
T cd05625          73 -KDNLYFVMDYIPGGDMMSLLIRM--GIFPEDLARFYIAELTCAVESVHKM-GFIHRDIKPDNILI--------------  134 (382)
T ss_pred             -CCEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEE--------------
Confidence             36899999999 88998888653  3588999999999999999999996 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc---
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---  268 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~---  268 (447)
                                                                                +..+.++|+|||++.....   
T Consensus       135 ----------------------------------------------------------~~~g~~kL~DFGla~~~~~~~~  156 (382)
T cd05625         135 ----------------------------------------------------------DRDGHIKLTDFGLCTGFRWTHD  156 (382)
T ss_pred             ----------------------------------------------------------CCCCCEEEeECCCCcccccccc
Confidence                                                                      4456799999998642100   


Q ss_pred             -----------------------------------------------ccccCCCCCCccChHHhhcCCCCccchhHhHHH
Q 013220          269 -----------------------------------------------QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFAC  301 (447)
Q Consensus       269 -----------------------------------------------~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGv  301 (447)
                                                                     .....+||+.|+|||++.+..++.++|||||||
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGv  236 (382)
T cd05625         157 SKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGV  236 (382)
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEechH
Confidence                                                           001236899999999999889999999999999


Q ss_pred             HHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCC
Q 013220          302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFS  381 (447)
Q Consensus       302 il~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (447)
                      ++|+|++|..||...+      ...   ....++.....                                   ...+..
T Consensus       237 il~elltG~~Pf~~~~------~~~---~~~~i~~~~~~-----------------------------------~~~p~~  272 (382)
T cd05625         237 ILYEMLVGQPPFLAQT------PLE---TQMKVINWQTS-----------------------------------LHIPPQ  272 (382)
T ss_pred             HHHHHHhCCCCCCCCC------HHH---HHHHHHccCCC-----------------------------------cCCCCc
Confidence            9999999999997653      111   11111100000                                   000011


Q ss_pred             hhhHHHHHHHHhhccccCCCCCCC---hHHHhcCccccccc
Q 013220          382 ETDAREFAEFLVPLLDFTPEKRPT---AQQCLQHPWLSLRN  419 (447)
Q Consensus       382 ~~~~~~l~~ll~~~L~~dP~kRpt---a~elL~hp~f~~~~  419 (447)
                      ..+++++.++|.+|+ .+|++|++   ++++++||||+...
T Consensus       273 ~~~s~~~~~li~~l~-~~p~~R~~~~~~~ei~~hp~f~~~~  312 (382)
T cd05625         273 AKLSPEASDLIIKLC-RGPEDRLGKNGADEIKAHPFFKTID  312 (382)
T ss_pred             ccCCHHHHHHHHHHc-cCHhHcCCCCCHHHHhcCCCcCCcC
Confidence            234668889999986 59999997   99999999998754

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=2.7e-40  Score=328.08  Aligned_cols=251  Identities=25%  Similarity=0.358  Sum_probs=202.2

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      +|.+.+.||+|+||.||+|++..++..||+|+++...    ........|.+++..+.     +|++|+++++++..   
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~-----~~~~i~~~~~~~~~---   72 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSG-----KPPFLTQLHSCFQT---   72 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcc-----CCCeEeeEEEEEec---
Confidence            4889999999999999999999999999999887643    22334566777776664     68899999998874   


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                       .+.+|+||||+ +++|...+...  ..+++..+..++.|++.||+|||+. ||+||||||+||++              
T Consensus        73 -~~~~~lv~E~~~~g~L~~~~~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-~ivHrDlkp~Nill--------------  134 (323)
T cd05616          73 -MDRLYFVMEYVNGGDLMYQIQQV--GRFKEPHAVFYAAEIAIGLFFLHSK-GIIYRDLKLDNVML--------------  134 (323)
T ss_pred             -CCEEEEEEcCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CEEecCCCHHHeEE--------------
Confidence             36899999999 88998877643  3489999999999999999999996 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc---c
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---K  268 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~---~  268 (447)
                                                                                +....++|+|||++....   .
T Consensus       135 ----------------------------------------------------------~~~~~~kL~DfG~~~~~~~~~~  156 (323)
T cd05616         135 ----------------------------------------------------------DSEGHIKIADFGMCKENMWDGV  156 (323)
T ss_pred             ----------------------------------------------------------CCCCcEEEccCCCceecCCCCC
Confidence                                                                      445679999999986432   2


Q ss_pred             ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          269 QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       269 ~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      .....+||+.|+|||++.+..++.++|||||||++|+|++|+.||...+      .......+.                
T Consensus       157 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~------~~~~~~~i~----------------  214 (323)
T cd05616         157 TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGED------EDELFQSIM----------------  214 (323)
T ss_pred             ccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCC------HHHHHHHHH----------------
Confidence            2234578999999999999899999999999999999999999997542      111111111                


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCCh-----HHHhcCccccccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA-----QQCLQHPWLSLRN  419 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta-----~elL~hp~f~~~~  419 (447)
                                                .....++...+.++.+||.+||+.||++|+++     .++++||||+..+
T Consensus       215 --------------------------~~~~~~p~~~s~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~h~~~~~~~  264 (323)
T cd05616         215 --------------------------EHNVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYID  264 (323)
T ss_pred             --------------------------hCCCCCCCcCCHHHHHHHHHHcccCHHhcCCCCCCCHHHHhcCCCcCCCC
Confidence                                      11222344557789999999999999999984     8999999998653

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=1.7e-40  Score=328.75  Aligned_cols=246  Identities=28%  Similarity=0.443  Sum_probs=196.7

Q ss_pred             EeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceE
Q 013220           42 RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHL  117 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~  117 (447)
                      +.||+|+||.||+|++..+++.||+|+++...    ........|.+++....     +|++|+++++.+..    ..++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~-----~~~~i~~~~~~~~~----~~~~   71 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAW-----ENPFLTHLYCTFQT----KEHL   71 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhcc-----CCCCccCeeEEEEe----CCEE
Confidence            46899999999999999999999999987653    22345666777776543     78999999999875    3689


Q ss_pred             EEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCc
Q 013220          118 CMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL  196 (447)
Q Consensus       118 ~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~  196 (447)
                      |+||||+ +++|...+...  ..+++..+..++.|++.||+|||++ ||+||||||+||++                   
T Consensus        72 ~lv~E~~~~g~L~~~i~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~ivHrDlkp~Nil~-------------------  129 (316)
T cd05620          72 FFVMEFLNGGDLMFHIQDK--GRFDLYRATFYAAEIVCGLQFLHSK-GIIYRDLKLDNVML-------------------  129 (316)
T ss_pred             EEEECCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEecCCCHHHeEE-------------------
Confidence            9999999 88898877643  3488999999999999999999996 99999999999999                   


Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccc---ccccccC
Q 013220          197 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA---NKQFAEE  273 (447)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~---~~~~~~~  273 (447)
                                                                           +..+.++|+|||++...   .......
T Consensus       130 -----------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~~~~~  156 (316)
T cd05620         130 -----------------------------------------------------DRDGHIKIADFGMCKENVFGDNRASTF  156 (316)
T ss_pred             -----------------------------------------------------CCCCCEEeCccCCCeecccCCCceecc
Confidence                                                                 34567999999998632   2223445


Q ss_pred             CCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchh
Q 013220          274 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  353 (447)
Q Consensus       274 ~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  353 (447)
                      +||..|+|||++.+..++.++|||||||++|+|++|..||...+      .......+                      
T Consensus       157 ~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~------~~~~~~~~----------------------  208 (316)
T cd05620         157 CGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDD------EDELFESI----------------------  208 (316)
T ss_pred             CCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCC------HHHHHHHH----------------------
Confidence            78999999999999899999999999999999999999997542      11111111                      


Q ss_pred             cccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCCh-HHHhcCccccccc
Q 013220          354 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA-QQCLQHPWLSLRN  419 (447)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta-~elL~hp~f~~~~  419 (447)
                                          ....+.++...+.++.+||.+||+.||++||++ +++++||||....
T Consensus       209 --------------------~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~~~~~~h~~f~~~~  255 (316)
T cd05620         209 --------------------RVDTPHYPRWITKESKDILEKLFERDPTRRLGVVGNIRGHPFFKTIN  255 (316)
T ss_pred             --------------------HhCCCCCCCCCCHHHHHHHHHHccCCHHHcCCChHHHHcCCCcCCCC
Confidence                                011112333456688999999999999999998 5888999998764

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=1.5e-40  Score=329.61  Aligned_cols=245  Identities=27%  Similarity=0.406  Sum_probs=198.0

Q ss_pred             EeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceE
Q 013220           42 RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHL  117 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~  117 (447)
                      +.||+|+||.||+|++..+++.||+|+++...    ...+.+..|.+++..+.     +|++|++++++|...    ...
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~-----~hp~i~~~~~~~~~~----~~~   71 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAA-----KHPFLTALHCCFQTK----DRL   71 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhcc-----CCCCccceeeEEEcC----CeE
Confidence            36899999999999999999999999987643    23345667888887664     799999999998753    689


Q ss_pred             EEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCc
Q 013220          118 CMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL  196 (447)
Q Consensus       118 ~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~  196 (447)
                      |+||||+ +++|...+...  ..+++..+..++.|++.||+|||++ ||+||||||+||++                   
T Consensus        72 ~lv~E~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-~ivHrDikp~Nill-------------------  129 (321)
T cd05591          72 FFVMEYVNGGDLMFQIQRS--RKFDEPRSRFYAAEVTLALMFLHRH-GVIYRDLKLDNILL-------------------  129 (321)
T ss_pred             EEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCCHHHeEE-------------------
Confidence            9999999 88888777644  3588999999999999999999996 99999999999999                   


Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc---cccccC
Q 013220          197 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEE  273 (447)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~---~~~~~~  273 (447)
                                                                           +.++.++|+|||++....   ......
T Consensus       130 -----------------------------------------------------~~~~~~kL~Dfg~~~~~~~~~~~~~~~  156 (321)
T cd05591         130 -----------------------------------------------------DAEGHCKLADFGMCKEGILNGVTTTTF  156 (321)
T ss_pred             -----------------------------------------------------CCCCCEEEeecccceecccCCcccccc
Confidence                                                                 445679999999986432   222345


Q ss_pred             CCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchh
Q 013220          274 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  353 (447)
Q Consensus       274 ~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  353 (447)
                      +|+..|+|||++.+..++.++|||||||++|+|++|+.||...+      .......+.                     
T Consensus       157 ~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~------~~~~~~~i~---------------------  209 (321)
T cd05591         157 CGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADN------EDDLFESIL---------------------  209 (321)
T ss_pred             ccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCCC------HHHHHHHHH---------------------
Confidence            68999999999998889999999999999999999999997552      111111111                     


Q ss_pred             cccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC-------ChHHHhcCcccccc
Q 013220          354 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-------TAQQCLQHPWLSLR  418 (447)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp-------ta~elL~hp~f~~~  418 (447)
                                           .....++...+.++.+||.+||+.||++||       +++++++||||...
T Consensus       210 ---------------------~~~~~~p~~~~~~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~~hp~~~~~  260 (321)
T cd05591         210 ---------------------HDDVLYPVWLSKEAVSILKAFMTKNPNKRLGCVASQGGEDAIKQHPFFKEI  260 (321)
T ss_pred             ---------------------cCCCCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCCHHHHhcCCccCCC
Confidence                                 111123333467889999999999999999       99999999999764

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=5.4e-40  Score=326.91  Aligned_cols=254  Identities=24%  Similarity=0.371  Sum_probs=200.6

Q ss_pred             EeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceE
Q 013220           42 RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHL  117 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~  117 (447)
                      +.||+|+||.||+|++..+++.||+|+++...    .....+..|..+++.+.     +|+||++++++|...    ..+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~-----~hp~Iv~~~~~~~~~----~~~   71 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETAS-----NHPFLVGLHSCFQTE----SRL   71 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcc-----CCCCCCceEEEEEcC----CEE
Confidence            36899999999999999999999999987643    23345778888888874     799999999988753    689


Q ss_pred             EEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCc
Q 013220          118 CMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL  196 (447)
Q Consensus       118 ~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~  196 (447)
                      |+||||+ +++|...+...  ..+++..++.++.|++.||+|||++ ||+||||||+||++                   
T Consensus        72 ~lv~e~~~~g~L~~~~~~~--~~l~~~~~~~~~~qi~~~l~~lH~~-~ivH~dlkp~Nili-------------------  129 (329)
T cd05588          72 FFVIEFVSGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNFLHER-GIIYRDLKLDNVLL-------------------  129 (329)
T ss_pred             EEEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEecCCCHHHeEE-------------------
Confidence            9999999 88898777543  4589999999999999999999996 99999999999999                   


Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccc---ccccccC
Q 013220          197 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA---NKQFAEE  273 (447)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~---~~~~~~~  273 (447)
                                                                           +....++|+|||++...   .......
T Consensus       130 -----------------------------------------------------~~~~~~kL~Dfg~~~~~~~~~~~~~~~  156 (329)
T cd05588         130 -----------------------------------------------------DAEGHIKLTDYGMCKEGIRPGDTTSTF  156 (329)
T ss_pred             -----------------------------------------------------CCCCCEEECcCccccccccCCCccccc
Confidence                                                                 34567999999998642   1223345


Q ss_pred             CCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchh
Q 013220          274 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  353 (447)
Q Consensus       274 ~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  353 (447)
                      +||+.|+|||++.+..++.++|+|||||++|+|++|+.||......... .......+                      
T Consensus       157 ~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~-~~~~~~~~----------------------  213 (329)
T cd05588         157 CGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNP-DQNTEDYL----------------------  213 (329)
T ss_pred             cCCccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCcccccccccc-cccchHHH----------------------
Confidence            7899999999999988999999999999999999999999643211100 00000000                      


Q ss_pred             cccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCC------hHHHhcCcccccc
Q 013220          354 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT------AQQCLQHPWLSLR  418 (447)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpt------a~elL~hp~f~~~  418 (447)
                                      ...+......++..++..+.++|.+||+.||.+|+|      ++++++||||...
T Consensus       214 ----------------~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~hp~~~~~  268 (329)
T cd05588         214 ----------------FQVILEKQIRIPRSLSVKASSVLKGFLNKDPKERLGCHPQTGFRDIKSHPFFRNI  268 (329)
T ss_pred             ----------------HHHHHcCCCCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCHHHHhcCCCCCCC
Confidence                            111222233355566778999999999999999997      7899999999764

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=3e-40  Score=327.11  Aligned_cols=246  Identities=27%  Similarity=0.415  Sum_probs=199.0

Q ss_pred             EeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceE
Q 013220           42 RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHL  117 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~  117 (447)
                      +.||+|+||+||+|++..++..||+|+++...    .....+..|.++++.+.     .|+||+++++++..    ...+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~-----~h~~i~~~~~~~~~----~~~~   71 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAG-----KHPFLTQLHSCFQT----KDRL   71 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhcc-----CCCCccceeeEEEc----CCEE
Confidence            46899999999999999999999999987653    23445677888888774     79999999999875    3689


Q ss_pred             EEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCc
Q 013220          118 CMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL  196 (447)
Q Consensus       118 ~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~  196 (447)
                      |+||||+ +++|...+...  ..+++..+..++.|++.||+|||++ ||+||||||+||++                   
T Consensus        72 ~lv~e~~~~~~L~~~~~~~--~~l~~~~~~~~~~qi~~~l~~LH~~-~ivH~dlkp~Nill-------------------  129 (318)
T cd05570          72 FFVMEYVNGGDLMFHIQRS--GRFDEPRARFYAAEIVLGLQFLHER-GIIYRDLKLDNVLL-------------------  129 (318)
T ss_pred             EEEEcCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeEccCCCHHHeEE-------------------
Confidence            9999999 88888877643  3589999999999999999999996 99999999999999                   


Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc---cccccC
Q 013220          197 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEE  273 (447)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~---~~~~~~  273 (447)
                                                                           +..+.++|+|||++....   ......
T Consensus       130 -----------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~~~~~  156 (318)
T cd05570         130 -----------------------------------------------------DSEGHIKIADFGMCKEGILGGVTTSTF  156 (318)
T ss_pred             -----------------------------------------------------CCCCcEEecccCCCeecCcCCCcccce
Confidence                                                                 345679999999986421   222334


Q ss_pred             CCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchh
Q 013220          274 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  353 (447)
Q Consensus       274 ~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  353 (447)
                      +|+..|+|||++.+..++.++|+|||||++|+|++|..||...+      .......                       
T Consensus       157 ~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~------~~~~~~~-----------------------  207 (318)
T cd05570         157 CGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDD------EDELFQS-----------------------  207 (318)
T ss_pred             ecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCC------HHHHHHH-----------------------
Confidence            68999999999999899999999999999999999999996542      1111111                       


Q ss_pred             cccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCCh-----HHHhcCccccccc
Q 013220          354 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA-----QQCLQHPWLSLRN  419 (447)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta-----~elL~hp~f~~~~  419 (447)
                                         +......++...+..+.+||.+||+.||.+|||+     .++++||||+...
T Consensus       208 -------------------i~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~~~~~~~~~  259 (318)
T cd05570         208 -------------------ILEDEVRYPRWLSKEAKSILKSFLTKNPEKRLGCLPTGEQDIKGHPFFREID  259 (318)
T ss_pred             -------------------HHcCCCCCCCcCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHhcCCCcCCCC
Confidence                               1111122344456789999999999999999999     9999999998753

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=7.5e-40  Score=331.20  Aligned_cols=253  Identities=22%  Similarity=0.375  Sum_probs=202.8

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      .++|++.++||+|+||.||+|++..++..||+|++....    .....+.+|+++++.+      +|++|+++++++.. 
T Consensus        42 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~------~h~~iv~~~~~~~~-  114 (370)
T cd05596          42 AEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHA------NSEWIVQLHYAFQD-  114 (370)
T ss_pred             HHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhC------CCCCcceEEEEEec-
Confidence            468999999999999999999999999999999986532    2234567899999988      88999999988874 


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                         +..+|+||||+ +++|.+++...   .+++..+..++.|++.||+|||++ ||+||||||+|||+            
T Consensus       115 ---~~~~~lv~Ey~~gg~L~~~l~~~---~l~~~~~~~~~~qi~~aL~~LH~~-~ivHrDLkp~NILl------------  175 (370)
T cd05596         115 ---DKYLYMVMEYMPGGDLVNLMSNY---DIPEKWARFYTAEVVLALDAIHSM-GFIHRDVKPDNMLL------------  175 (370)
T ss_pred             ---CCEEEEEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCCHHHEEE------------
Confidence               46899999999 88998887542   488899999999999999999996 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                  +..+.++|+|||++......
T Consensus       176 ------------------------------------------------------------~~~~~~kL~DfG~~~~~~~~  195 (370)
T cd05596         176 ------------------------------------------------------------DKSGHLKLADFGTCMKMDAN  195 (370)
T ss_pred             ------------------------------------------------------------cCCCCEEEEeccceeeccCC
Confidence                                                                        44677999999998754322


Q ss_pred             ----cccCCCCCCccChHHhhcC----CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          270 ----FAEEIQTRQYRAPEVILRA----GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       270 ----~~~~~gt~~y~aPE~l~~~----~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                          ....+||+.|+|||++.+.    .++.++|+|||||++|+|++|..||...+      .......+..   ...  
T Consensus       196 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~------~~~~~~~i~~---~~~--  264 (370)
T cd05596         196 GMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADS------LVGTYSKIMD---HKN--  264 (370)
T ss_pred             CcccCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCCC------HHHHHHHHHc---CCC--
Confidence                2235789999999999753    37899999999999999999999997653      1111111111   000  


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCCh--hhHHHHHHHHhhccccCCCC--CCChHHHhcCccccc
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSE--TDAREFAEFLVPLLDFTPEK--RPTAQQCLQHPWLSL  417 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~ll~~~L~~dP~k--Rpta~elL~hp~f~~  417 (447)
                                                         ...++.  ..+.++.+||.+||+.+|.+  |+|++++++||||+.
T Consensus       265 -----------------------------------~~~~~~~~~~s~~~~~li~~~L~~~p~r~~R~s~~ell~h~~~~~  309 (370)
T cd05596         265 -----------------------------------SLTFPDDIEISKQAKDLICAFLTDREVRLGRNGVDEIKSHPFFKN  309 (370)
T ss_pred             -----------------------------------cCCCCCcCCCCHHHHHHHHHHccChhhccCCCCHHHHhcCcccCC
Confidence                                               001111  34678999999999999988  999999999999986


Q ss_pred             cc
Q 013220          418 RN  419 (447)
Q Consensus       418 ~~  419 (447)
                      ..
T Consensus       310 ~~  311 (370)
T cd05596         310 DQ  311 (370)
T ss_pred             CC
Confidence            43

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=1.2e-40  Score=330.79  Aligned_cols=244  Identities=29%  Similarity=0.447  Sum_probs=197.3

Q ss_pred             EeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceE
Q 013220           42 RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHL  117 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~  117 (447)
                      +.||+|+||.||+|++..++..||+|+++...    .....+..|+++++.+      .|+||++++..+..    ...+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~------~hp~i~~~~~~~~~----~~~~   70 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNS------RHPFLTALKYSFQT----HDRL   70 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhC------CCCCCCceEEEEEc----CCEE
Confidence            46899999999999999999999999987543    2234567788888887      78999999988875    3689


Q ss_pred             EEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh-hCCcccccCCCCCeEeeecCCCCCCcccCCCCCC
Q 013220          118 CMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR-ELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI  195 (447)
Q Consensus       118 ~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~-~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~  195 (447)
                      |+||||+ +++|...+...  ..+++..+..++.||+.||+|||+ + ||+||||||+||++                  
T Consensus        71 ~lv~E~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~lH~~~-~ivHrDikp~NIll------------------  129 (325)
T cd05594          71 CFVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSALDYLHSEK-NVVYRDLKLENLML------------------  129 (325)
T ss_pred             EEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhcC-CEEecCCCCCeEEE------------------
Confidence            9999999 78888777543  358999999999999999999997 5 99999999999999                  


Q ss_pred             cCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc---ccccc
Q 013220          196 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAE  272 (447)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~---~~~~~  272 (447)
                                                                            +..+.++|+|||++....   .....
T Consensus       130 ------------------------------------------------------~~~~~~kL~Dfg~~~~~~~~~~~~~~  155 (325)
T cd05594         130 ------------------------------------------------------DKDGHIKITDFGLCKEGIKDGATMKT  155 (325)
T ss_pred             ------------------------------------------------------CCCCCEEEecCCCCeecCCCCccccc
Confidence                                                                  445679999999986422   22233


Q ss_pred             CCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccch
Q 013220          273 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  352 (447)
Q Consensus       273 ~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  352 (447)
                      ..||+.|+|||++.+..++.++|||||||++|+|++|..||...+      .......                      
T Consensus       156 ~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~------~~~~~~~----------------------  207 (325)
T cd05594         156 FCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD------HEKLFEL----------------------  207 (325)
T ss_pred             ccCCcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCCC------HHHHHHH----------------------
Confidence            578999999999998889999999999999999999999996542      1111111                      


Q ss_pred             hcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC-----ChHHHhcCcccccc
Q 013220          353 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLR  418 (447)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp-----ta~elL~hp~f~~~  418 (447)
                                          +......++...+.++.+||.+||+.||++|+     ++.++++||||...
T Consensus       208 --------------------i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h~~~~~~  258 (325)
T cd05594         208 --------------------ILMEEIRFPRTLSPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQHKFFAGI  258 (325)
T ss_pred             --------------------HhcCCCCCCCCCCHHHHHHHHHHhhcCHHHhCCCCCCCHHHHhcCCCcCCC
Confidence                                11111223445577899999999999999997     99999999999864

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=3.4e-40  Score=334.09  Aligned_cols=253  Identities=24%  Similarity=0.387  Sum_probs=199.8

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      +.|++.++||+|+||+||+|++..+++.||+|++....    .....+.+|+++++.+      .|++|+++++.|..  
T Consensus         1 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l------~h~~iv~~~~~~~~--   72 (376)
T cd05598           1 SMFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEA------DNEWVVKLYYSFQD--   72 (376)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhC------CCCCcceEEEEEEc--
Confidence            46999999999999999999999999999999886543    2245677899999998      78999999999875  


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                        +..+|+||||| +++|.+++...  ..+++..++.++.||+.||+|||++ ||+||||||+||++             
T Consensus        73 --~~~~~lv~E~~~~g~L~~~i~~~--~~~~~~~~~~~~~qi~~al~~lH~~-~ivHrDlkp~Nill-------------  134 (376)
T cd05598          73 --KDNLYFVMDYIPGGDMMSLLIRL--GIFEEDLARFYIAELTCAIESVHKM-GFIHRDIKPDNILI-------------  134 (376)
T ss_pred             --CCEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEeCCCCHHHEEE-------------
Confidence              36899999999 88999988653  3588999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc--
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--  268 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~--  268 (447)
                                                                                 +....++|+|||++.....  
T Consensus       135 -----------------------------------------------------------~~~~~ikL~DFG~a~~~~~~~  155 (376)
T cd05598         135 -----------------------------------------------------------DRDGHIKLTDFGLCTGFRWTH  155 (376)
T ss_pred             -----------------------------------------------------------CCCCCEEEEeCCCCccccccc
Confidence                                                                       3456799999998742100  


Q ss_pred             --------------------------------------------ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHH
Q 013220          269 --------------------------------------------QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAF  304 (447)
Q Consensus       269 --------------------------------------------~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~  304 (447)
                                                                  .....+||+.|+|||++.+..++.++|||||||++|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvily  235 (376)
T cd05598         156 DSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILY  235 (376)
T ss_pred             cccccccccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeeccceee
Confidence                                                        011246899999999999989999999999999999


Q ss_pred             HHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhh
Q 013220          305 ELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETD  384 (447)
Q Consensus       305 ~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (447)
                      +|++|..||...+.      .....   .+..... .                                  ........+
T Consensus       236 ell~G~~Pf~~~~~------~~~~~---~i~~~~~-~----------------------------------~~~~~~~~~  271 (376)
T cd05598         236 EMLVGQPPFLADTP------AETQL---KVINWET-T----------------------------------LHIPSQAKL  271 (376)
T ss_pred             ehhhCCCCCCCCCH------HHHHH---HHhccCc-c----------------------------------ccCCCCCCC
Confidence            99999999976531      11111   1100000 0                                  000011234


Q ss_pred             HHHHHHHHhhccccCCCCCC---ChHHHhcCcccccc
Q 013220          385 AREFAEFLVPLLDFTPEKRP---TAQQCLQHPWLSLR  418 (447)
Q Consensus       385 ~~~l~~ll~~~L~~dP~kRp---ta~elL~hp~f~~~  418 (447)
                      +.++.+||.+|+ .+|.+|+   |+.++++||||+..
T Consensus       272 s~~~~~li~~l~-~~p~~R~~~~t~~ell~h~~~~~~  307 (376)
T cd05598         272 SREASDLILRLC-CGAEDRLGKNGADEIKAHPFFKGI  307 (376)
T ss_pred             CHHHHHHHHHHh-cCHhhcCCCCCHHHHhCCCCcCCC
Confidence            667889999976 5999999   99999999999864

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.6e-39  Score=316.61  Aligned_cols=256  Identities=28%  Similarity=0.380  Sum_probs=204.9

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      .|++.+.||+|+||+||++.+..++..||+|++....    .....+.+|+++++.+      +|++|+++++.+..   
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~---   71 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKV------NSRFVVSLAYAYET---   71 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhc------CCCCEeeeeeeecC---
Confidence            3889999999999999999999999999999886542    2234567899999999      78999999998874   


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                       ++.+++||||+ +++|.+.+.......+++..+..++.|++.||.|||++ ||+||||||+||++              
T Consensus        72 -~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~dlkp~Nil~--------------  135 (285)
T cd05605          72 -KDALCLVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRE-RIVYRDLKPENILL--------------  135 (285)
T ss_pred             -CCeEEEEEeccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHC-CcEecCCCHHHEEE--------------
Confidence             36899999999 78888776544334689999999999999999999996 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                +....++|+|||++......  
T Consensus       136 ----------------------------------------------------------~~~~~~~l~Dfg~~~~~~~~~~  157 (285)
T cd05605         136 ----------------------------------------------------------DDYGHIRISDLGLAVEIPEGET  157 (285)
T ss_pred             ----------------------------------------------------------CCCCCEEEeeCCCceecCCCCc
Confidence                                                                      33567999999998654322  


Q ss_pred             cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          270 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      ....+|+..|+|||.+.+..++.++|+||+||++|+|++|..||.+...      ......+...+              
T Consensus       158 ~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~------~~~~~~~~~~~--------------  217 (285)
T cd05605         158 IRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKE------KVKREEVERRV--------------  217 (285)
T ss_pred             cccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCch------hhHHHHHHHHh--------------
Confidence            2335789999999999888899999999999999999999999975431      11111111111              


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC-----ChHHHhcCccccccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRN  419 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp-----ta~elL~hp~f~~~~  419 (447)
                                              ......++...+..+.+||.+||+.||++||     +++++++||||....
T Consensus       218 ------------------------~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~~~~~~~~  268 (285)
T cd05605         218 ------------------------KEDQEEYSEKFSEAARSICRQLLTKDPGFRLGCRGEGAEEVKAHPFFRTAN  268 (285)
T ss_pred             ------------------------hhcccccCcccCHHHHHHHHHHccCCHHHhcCCCCCCHHHHhcCcCccCCC
Confidence                                    0111123344567889999999999999999     999999999998643

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=3.6e-40  Score=326.34  Aligned_cols=246  Identities=29%  Similarity=0.435  Sum_probs=195.6

Q ss_pred             EeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceE
Q 013220           42 RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHL  117 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~  117 (447)
                      +.||+|+||.||+|++..+++.||+|+++...    ...+....|.+++..+.     +|++|+++++++..    +..+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~-----~hp~i~~~~~~~~~----~~~~   71 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAW-----EHPFLTHLFCTFQT----KEHL   71 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhcc-----CCCCccceeeEEEc----CCEE
Confidence            46899999999999999999999999987653    22334555666665543     79999999998874    4689


Q ss_pred             EEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCc
Q 013220          118 CMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL  196 (447)
Q Consensus       118 ~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~  196 (447)
                      ++||||+ +++|...+...  ..+++..+..++.|++.||+|||+. ||+||||||+||++                   
T Consensus        72 ~lv~e~~~gg~L~~~~~~~--~~~~~~~~~~~~~qi~~al~~LH~~-~ivH~dlkp~Nill-------------------  129 (316)
T cd05592          72 FFVMEYLNGGDLMFHIQSS--GRFDEARARFYAAEIICGLQFLHKK-GIIYRDLKLDNVLL-------------------  129 (316)
T ss_pred             EEEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CEEeCCCCHHHeEE-------------------
Confidence            9999999 88998877643  3589999999999999999999996 99999999999999                   


Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc---cccccC
Q 013220          197 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEE  273 (447)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~---~~~~~~  273 (447)
                                                                           +....++|+|||++....   ......
T Consensus       130 -----------------------------------------------------~~~~~~kL~Dfg~a~~~~~~~~~~~~~  156 (316)
T cd05592         130 -----------------------------------------------------DKDGHIKIADFGMCKENMNGEGKASTF  156 (316)
T ss_pred             -----------------------------------------------------CCCCCEEEccCcCCeECCCCCCccccc
Confidence                                                                 345679999999986432   222345


Q ss_pred             CCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchh
Q 013220          274 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  353 (447)
Q Consensus       274 ~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  353 (447)
                      +||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+      .......+   .                  
T Consensus       157 ~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~------~~~~~~~i---~------------------  209 (316)
T cd05592         157 CGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGED------EDELFDSI---L------------------  209 (316)
T ss_pred             cCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCCC------HHHHHHHH---H------------------
Confidence            78999999999998889999999999999999999999997542      11111111   1                  


Q ss_pred             cccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCCh-HHHhcCccccccc
Q 013220          354 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA-QQCLQHPWLSLRN  419 (447)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta-~elL~hp~f~~~~  419 (447)
                                           ...+.++...+.++.+||.+||+.||.+||++ ++++.||||....
T Consensus       210 ---------------------~~~~~~~~~~~~~~~~ll~~~l~~~P~~R~~~~~~l~~h~~~~~~~  255 (316)
T cd05592         210 ---------------------NDRPHFPRWISKEAKDCLSKLFERDPTKRLGVDGDIRQHPFFRGID  255 (316)
T ss_pred             ---------------------cCCCCCCCCCCHHHHHHHHHHccCCHHHcCCChHHHHcCcccCCCC
Confidence                                 11112334456788899999999999999986 5888999998753

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=100.00  E-value=2e-39  Score=319.87  Aligned_cols=293  Identities=27%  Similarity=0.376  Sum_probs=206.0

Q ss_pred             EEeecccCceEEEEEEeCC--CCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEE
Q 013220           41 QRKLGWGQFSIVWLAYDTR--TSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLC  118 (447)
Q Consensus        41 ~~~lG~G~~g~Vy~a~~~~--~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~  118 (447)
                      ..+||+|+||+||+|++..  ++..||+|.+..... ...+.+|+++++.+      .|+||+++++++...  .....+
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~-~~~~~~E~~~l~~l------~h~niv~~~~~~~~~--~~~~~~   76 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGI-SMSACREIALLREL------KHPNVIALQKVFLSH--SDRKVW   76 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCCCC-cHHHHHHHHHHHhC------CCCCeeeEEEEEecc--CCCeEE
Confidence            3579999999999998653  568999998765432 34577899999999      789999999988654  446899


Q ss_pred             EEEecccccHHHHHHhhc-------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          119 MVLEFLGDSLLRLIKYSR-------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       119 lvmE~~~~~L~~~~~~~~-------~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                      +||||+++++.+.+....       ...+++..+..++.|++.||+|||+. ||+||||||+||++....          
T Consensus        77 lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~-~ivH~Dlkp~Nil~~~~~----------  145 (317)
T cd07867          77 LLFDYAEHDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHAN-WVLHRDLKPANILVMGEG----------  145 (317)
T ss_pred             EEEeeeCCcHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhC-CEEcCCCCHHHEEEccCC----------
Confidence            999999888887764321       12378888999999999999999996 999999999999994311          


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                +....++|+|||++......  
T Consensus       146 ----------------------------------------------------------~~~~~~kl~DfG~a~~~~~~~~  167 (317)
T cd07867         146 ----------------------------------------------------------PERGRVKIADMGFARLFNSPLK  167 (317)
T ss_pred             ----------------------------------------------------------CCCCcEEEeeccceeccCCCcc
Confidence                                                                      22457999999999754432  


Q ss_pred             ----cccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCC---CCchHHHHHHHHHhCCCCHH
Q 013220          270 ----FAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGF---CEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       270 ----~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~---~~~~~~~~~~~~~~g~~~~~  341 (447)
                          .....+|+.|+|||++.+. .++.++|||||||++|+|++|..||........   ......+..+...+|.....
T Consensus       168 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (317)
T cd07867         168 PLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQLDRIFSVMGFPADK  247 (317)
T ss_pred             cccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCcccccccccccccccHHHHHHHHHhcCCCChh
Confidence                1234678999999999874 478999999999999999999999976542211   12344566666776655543


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      ..........+.......... ..........+.   .........+.+||.+||+.||.+|||++|+|+||||
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~ll~~~l~~dP~~R~t~~e~l~hp~f  317 (317)
T cd07867         248 DWEDIRKMPEYPTLQKDFRRT-TYANSSLIKYME---KHKVKPDSKVFLLLQKLLTMDPTKRITSEQALQDPYF  317 (317)
T ss_pred             hhhhhhhcccchhhhhhhccc-ccCCchhhhhhh---cccCCCChHHHHHHHHHhccCcccccCHHHHhcCCCC
Confidence            322211111111111000000 000001111111   1111234568899999999999999999999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=8.6e-40  Score=342.69  Aligned_cols=248  Identities=26%  Similarity=0.392  Sum_probs=206.2

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEE-echhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccc-cccc-C
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI-QKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDH-FKHA-G  111 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~-~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~-~~~~-~  111 (447)
                      +.++++.+.|.+|||+.||+|++...+..||+|. +..++...+.+.+|+++|+.|.     +|+|||.|++. .... +
T Consensus        36 ~~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~-----gh~nIV~yidss~~~~~~  110 (738)
T KOG1989|consen   36 SHRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLS-----GHKNIVSYIDSSAINRSS  110 (738)
T ss_pred             CEEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhc-----CCCceeeEeccccccccC
Confidence            4668999999999999999999998888999994 5557778899999999999997     89999999994 3322 2


Q ss_pred             CC-cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCC--cccccCCCCCeEeeecCCCCCCc
Q 013220          112 PN-GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELG--IIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       112 ~~-~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~g--IiH~Dikp~Nill~~~~~~~~~~  187 (447)
                      .+ ...+.|+|||| |+.|.+++.......|++.+++.|++++++|+++||. +.  |||||||-+|+|++         
T Consensus       111 ~~~~~EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~-~~pPiIHRDLKiENvLls---------  180 (738)
T KOG1989|consen  111 NNGVWEVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHY-LKPPIIHRDLKIENVLLS---------  180 (738)
T ss_pred             CCceeEEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhc-CCCccchhhhhhhheEEc---------
Confidence            23 36799999999 7899999987666669999999999999999999998 46  99999999999993         


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                     .++..||||||.++...
T Consensus       181 ---------------------------------------------------------------~~g~~KLCDFGSatt~~  197 (738)
T KOG1989|consen  181 ---------------------------------------------------------------ADGNYKLCDFGSATTKI  197 (738)
T ss_pred             ---------------------------------------------------------------CCCCEEeCccccccccc
Confidence                                                                           46789999999996443


Q ss_pred             cccc------------cCCCCCCccChHHhh---cCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHH
Q 013220          268 KQFA------------EEIQTRQYRAPEVIL---RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMM  332 (447)
Q Consensus       268 ~~~~------------~~~gt~~y~aPE~l~---~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~  332 (447)
                      ...+            ....|+.|+|||+|.   +.+.+.|+|||+|||+||-|+....||.....              
T Consensus       198 ~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~--------------  263 (738)
T KOG1989|consen  198 LSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGK--------------  263 (738)
T ss_pred             CCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcc--------------
Confidence            2221            114689999999986   56789999999999999999999999975521              


Q ss_pred             HHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCCh--hhHHHHHHHHhhccccCCCCCCChHHHh
Q 013220          333 ELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSE--TDAREFAEFLVPLLDFTPEKRPTAQQCL  410 (447)
Q Consensus       333 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~ll~~~L~~dP~kRpta~elL  410 (447)
                                                            -+|+..++.+|.  ..+..+.+||+.||+.||++||++-|++
T Consensus       264 --------------------------------------laIlng~Y~~P~~p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~  305 (738)
T KOG1989|consen  264 --------------------------------------LAILNGNYSFPPFPNYSDRLKDLIRTMLQPNPDERPNIYQVL  305 (738)
T ss_pred             --------------------------------------eeEEeccccCCCCccHHHHHHHHHHHHhccCcccCCCHHHHH
Confidence                                                  223444444554  6789999999999999999999999988


Q ss_pred             cC
Q 013220          411 QH  412 (447)
Q Consensus       411 ~h  412 (447)
                      .+
T Consensus       306 ~~  307 (738)
T KOG1989|consen  306 EE  307 (738)
T ss_pred             HH
Confidence            44

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=8.8e-40  Score=325.43  Aligned_cols=254  Identities=25%  Similarity=0.378  Sum_probs=199.8

Q ss_pred             EeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceE
Q 013220           42 RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHL  117 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~  117 (447)
                      +.||+|+||+||+|++..+++.||+|+++...    .....+..|+.++..+.     +|+||+++++++...    ...
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~-----~hp~iv~~~~~~~~~----~~~   71 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQAS-----NHPFLVGLHSCFQTE----SRL   71 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcC-----CCCcCCceeeEEEeC----CEE
Confidence            46899999999999999999999999887542    23345677888877664     799999999998753    689


Q ss_pred             EEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCc
Q 013220          118 CMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL  196 (447)
Q Consensus       118 ~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~  196 (447)
                      ++||||+ +++|...+...  ..+++..++.++.|++.||+|||++ ||+||||||+||++                   
T Consensus        72 ~lv~E~~~~~~L~~~~~~~--~~l~~~~~~~i~~qi~~~l~~lH~~-~ivH~Dikp~Nili-------------------  129 (329)
T cd05618          72 FFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLHER-GIIYRDLKLDNVLL-------------------  129 (329)
T ss_pred             EEEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeeCCCCHHHEEE-------------------
Confidence            9999999 88888776543  4589999999999999999999996 99999999999999                   


Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc---cccccC
Q 013220          197 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEE  273 (447)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~---~~~~~~  273 (447)
                                                                           +.++.++|+|||++....   ......
T Consensus       130 -----------------------------------------------------~~~~~~kL~DfG~~~~~~~~~~~~~~~  156 (329)
T cd05618         130 -----------------------------------------------------DSEGHIKLTDYGMCKEGLRPGDTTSTF  156 (329)
T ss_pred             -----------------------------------------------------CCCCCEEEeeCCccccccCCCCccccc
Confidence                                                                 445679999999986432   222345


Q ss_pred             CCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchh
Q 013220          274 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  353 (447)
Q Consensus       274 ~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  353 (447)
                      +||..|+|||++.+..++.++|+|||||++|+|++|..||......... .......+                      
T Consensus       157 ~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~-~~~~~~~~----------------------  213 (329)
T cd05618         157 CGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNP-DQNTEDYL----------------------  213 (329)
T ss_pred             cCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCc-ccccHHHH----------------------
Confidence            7899999999999988999999999999999999999999643211100 00000001                      


Q ss_pred             cccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCCh------HHHhcCcccccc
Q 013220          354 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA------QQCLQHPWLSLR  418 (447)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta------~elL~hp~f~~~  418 (447)
                                      ...+......++...+..+.+||.+||+.||++|||+      +++++||||+..
T Consensus       214 ----------------~~~i~~~~~~~p~~~~~~~~~ll~~~L~~dP~~R~~~~~~~~~~~i~~hp~f~~~  268 (329)
T cd05618         214 ----------------FQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNV  268 (329)
T ss_pred             ----------------HHHHhcCCCCCCCCCCHHHHHHHHHHhcCCHHHcCCCCCCCCHHHHhcCCCCCCC
Confidence                            1112222334556667789999999999999999984      799999999865

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.9e-42  Score=333.51  Aligned_cols=253  Identities=31%  Similarity=0.461  Sum_probs=210.4

Q ss_pred             ccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           33 FNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        33 ~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      .....|+.+++||.|+||.||+|.+..+++.||||++..+.  ...+.+..|+.+|..+      .++||.++|+.|.. 
T Consensus        10 ~~~~~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~------~~~~it~yygsyl~-   82 (467)
T KOG0201|consen   10 DPELLYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQC------DSPNITEYYGSYLK-   82 (467)
T ss_pred             CcccccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhc------CcchHHhhhhheee-
Confidence            33467999999999999999999999999999999988664  4456888999999999      77899999999985 


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                         +..+|++|||| ||++.+++..+.  .+.+..+..++++++.||.|+|.+ +.+|||||+.||++..          
T Consensus        83 ---g~~LwiiMey~~gGsv~~lL~~~~--~~~E~~i~~ilre~l~~l~ylH~~-~kiHrDIKaanil~s~----------  146 (467)
T KOG0201|consen   83 ---GTKLWIIMEYCGGGSVLDLLKSGN--ILDEFEIAVILREVLKGLDYLHSE-KKIHRDIKAANILLSE----------  146 (467)
T ss_pred             ---cccHHHHHHHhcCcchhhhhccCC--CCccceeeeehHHHHHHhhhhhhc-ceecccccccceeEec----------
Confidence               47899999999 889999887543  258888999999999999999997 9999999999999943          


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                    .+.+||+|||.+......
T Consensus       147 --------------------------------------------------------------~g~vkl~DfgVa~ql~~~  164 (467)
T KOG0201|consen  147 --------------------------------------------------------------SGDVKLADFGVAGQLTNT  164 (467)
T ss_pred             --------------------------------------------------------------cCcEEEEecceeeeeech
Confidence                                                                          478999999999654422


Q ss_pred             ---cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCC
Q 013220          270 ---FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  346 (447)
Q Consensus       270 ---~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  346 (447)
                         ...++||++|||||++.+..|+.|+||||||+++++|++|.+|+.....         +..++-+-...|       
T Consensus       165 ~~rr~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hP---------mrvlflIpk~~P-------  228 (467)
T KOG0201|consen  165 VKRRKTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHP---------MRVLFLIPKSAP-------  228 (467)
T ss_pred             hhccccccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCc---------ceEEEeccCCCC-------
Confidence               3567999999999999988999999999999999999999999976531         111111111111       


Q ss_pred             CCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccc
Q 013220          347 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~  417 (447)
                                                     +.+....+..+.+|+..||+.||+.||+|+++|+|+|++.
T Consensus       229 -------------------------------P~L~~~~S~~~kEFV~~CL~k~P~~RpsA~~LLKh~FIk~  268 (467)
T KOG0201|consen  229 -------------------------------PRLDGDFSPPFKEFVEACLDKNPEFRPSAKELLKHKFIKR  268 (467)
T ss_pred             -------------------------------CccccccCHHHHHHHHHHhhcCcccCcCHHHHhhhHHHHh
Confidence                                           1122234678999999999999999999999999999996

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=3.8e-40  Score=327.69  Aligned_cols=254  Identities=23%  Similarity=0.375  Sum_probs=202.1

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH----hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ----FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~----~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|.+.+.||+|+||+||+|++..+++.||+|+++....    ....+.+|+++++.+      +|++|++++..+..  
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~------~~~~i~~~~~~~~~--   72 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSIS------NSPWIPQLQYAFQD--   72 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhC------CCCCCcceeeEEec--
Confidence            369999999999999999999999999999999876533    345677888888887      78999999988874  


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                        ....++||||+ +++|.+++.... ..+++..+..++.|++.||+|||+. ||+||||||+||++             
T Consensus        73 --~~~~~lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~qi~~aL~~lH~~-~i~H~Dlkp~NIll-------------  135 (330)
T cd05601          73 --KDNLYLVMEYQPGGDLLSLLNRYE-DQFDEDMAQFYLAELVLAIHSVHQM-GYVHRDIKPENVLI-------------  135 (330)
T ss_pred             --CCeEEEEECCCCCCCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC-CeEcccCchHheEE-------------
Confidence              36899999999 889998886542 4589999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF  270 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~  270 (447)
                                                                                 +..+.++|+|||++.......
T Consensus       136 -----------------------------------------------------------~~~~~~kL~Dfg~a~~~~~~~  156 (330)
T cd05601         136 -----------------------------------------------------------DRTGHIKLADFGSAARLTANK  156 (330)
T ss_pred             -----------------------------------------------------------CCCCCEEeccCCCCeECCCCC
Confidence                                                                       446779999999996543221


Q ss_pred             ----ccCCCCCCccChHHhh------cCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCH
Q 013220          271 ----AEEIQTRQYRAPEVIL------RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  340 (447)
Q Consensus       271 ----~~~~gt~~y~aPE~l~------~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~  340 (447)
                          ....||+.|+|||++.      +..++.++|||||||++|+|++|..||...+      .......+.......  
T Consensus       157 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~------~~~~~~~i~~~~~~~--  228 (330)
T cd05601         157 MVNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGT------SAKTYNNIMNFQRFL--  228 (330)
T ss_pred             ceeeecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCCCC------HHHHHHHHHcCCCcc--
Confidence                2236899999999987      3457899999999999999999999996542      111222111100000  


Q ss_pred             HhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          341 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                                                          ..+.....+..+.+||.+||+ +|.+|||++++++||||+..
T Consensus       229 ------------------------------------~~~~~~~~~~~~~~li~~ll~-~p~~R~t~~~l~~h~~~~~~  269 (330)
T cd05601         229 ------------------------------------KFPEDPKVSSDFLDLIQSLLC-GQKERLGYEGLCCHPFFSKI  269 (330)
T ss_pred             ------------------------------------CCCCCCCCCHHHHHHHHHHcc-ChhhCCCHHHHhCCCCcCCC
Confidence                                                000112346688999999998 99999999999999999864

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>PHA03207 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=2e-39  Score=330.58  Aligned_cols=288  Identities=22%  Similarity=0.354  Sum_probs=214.5

Q ss_pred             CccccCCceEEEEeecccCceEEEEEEeC--CCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           30 GDLFNGGRYIAQRKLGWGQFSIVWLAYDT--RTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        30 g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~--~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      +.++. .+|.+.+.||.|+||.||+|...  .++..||+|.+...    ....+|+++++.+      +|+||+++++.|
T Consensus        87 ~~~~~-~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~----~~~~~E~~il~~l------~h~~iv~~~~~~  155 (392)
T PHA03207         87 ASVVR-MQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG----KTPGREIDILKTI------SHRAIINLIHAY  155 (392)
T ss_pred             chhcc-CceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc----ccHHHHHHHHHhc------CCCCccceeeeE
Confidence            34443 68999999999999999999753  45688999977653    2356899999999      789999999988


Q ss_pred             cccCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCc
Q 013220          108 KHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                      ..    ....|++||++++++...+..  ...+++..+..++.||+.||+|||++ ||+||||||+|||+          
T Consensus       156 ~~----~~~~~lv~e~~~~~l~~~l~~--~~~l~~~~~~~i~~ql~~aL~~LH~~-givHrDlkp~Nill----------  218 (392)
T PHA03207        156 RW----KSTVCMVMPKYKCDLFTYVDR--SGPLPLEQAITIQRRLLEALAYLHGR-GIIHRDVKTENIFL----------  218 (392)
T ss_pred             ee----CCEEEEEehhcCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCCHHHEEE----------
Confidence            74    368999999998888887743  24589999999999999999999996 99999999999999          


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                    +....++|+|||++....
T Consensus       219 --------------------------------------------------------------~~~~~~~l~DfG~a~~~~  236 (392)
T PHA03207        219 --------------------------------------------------------------DEPENAVLGDFGAACKLD  236 (392)
T ss_pred             --------------------------------------------------------------cCCCCEEEccCccccccC
Confidence                                                                          345679999999986544


Q ss_pred             cc-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh
Q 013220          268 KQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  342 (447)
Q Consensus       268 ~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (447)
                      ..     ....+||..|+|||++.+..++.++|||||||++|+|++|+.||.+....   .....+..+.+.++..+..+
T Consensus       237 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~---~~~~~l~~i~~~~~~~~~~~  313 (392)
T PHA03207        237 AHPDTPQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQVK---SSSSQLRSIIRCMQVHPLEF  313 (392)
T ss_pred             cccccccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCCC---CcHHHHHHHHHHhccCcccc
Confidence            22     12347899999999999888999999999999999999999999876533   35566777777776665443


Q ss_pred             hhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                      .......  ......+........+ .....+.     ....+.++.+||.+||+.||++|||+.|+|+||||+..
T Consensus       314 ~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~li~~ml~~dp~~Rpsa~e~l~~p~f~~~  381 (392)
T PHA03207        314 PQNGSTN--LCKHFKQYAIVLRPPY-TIPPVIR-----KYGMHMDVEYLIAKMLTFDQEFRPSAQDILSLPLFTKE  381 (392)
T ss_pred             CCccchh--HHHHHHhhcccccCCc-cccchhh-----ccCcchhHHHHHHHHhccChhhCCCHHHHhhCchhhcc
Confidence            2111000  0000000000000000 0000000     01234578899999999999999999999999999854

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=4.4e-40  Score=325.81  Aligned_cols=246  Identities=30%  Similarity=0.447  Sum_probs=196.3

Q ss_pred             EeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceE
Q 013220           42 RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHL  117 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~  117 (447)
                      +.||+|+||.||+|++..+++.||+|+++...    ........|.+++..+.     +|++|+++++++..    ...+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~-----~hp~iv~~~~~~~~----~~~~   71 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAW-----EHPFLTHLYCTFQT----KENL   71 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhcc-----CCCcCcceEEEEEe----CCEE
Confidence            46899999999999999999999999987653    22345566777776542     89999999999875    3689


Q ss_pred             EEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCc
Q 013220          118 CMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL  196 (447)
Q Consensus       118 ~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~  196 (447)
                      ++||||+ +++|...+...  ..+++..+..++.|++.||+|||++ ||+||||||+||++                   
T Consensus        72 ~lv~ey~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~LH~~-~ivHrdikp~Nil~-------------------  129 (316)
T cd05619          72 FFVMEYLNGGDLMFHIQSC--HKFDLPRATFYAAEIICGLQFLHSK-GIVYRDLKLDNILL-------------------  129 (316)
T ss_pred             EEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeEeCCCCHHHEEE-------------------
Confidence            9999999 88998888643  3488999999999999999999996 99999999999999                   


Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc---cccccC
Q 013220          197 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEE  273 (447)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~---~~~~~~  273 (447)
                                                                           +....++|+|||++....   ......
T Consensus       130 -----------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~~~~~  156 (316)
T cd05619         130 -----------------------------------------------------DTDGHIKIADFGMCKENMLGDAKTCTF  156 (316)
T ss_pred             -----------------------------------------------------CCCCCEEEccCCcceECCCCCCceeee
Confidence                                                                 335679999999986422   222345


Q ss_pred             CCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchh
Q 013220          274 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  353 (447)
Q Consensus       274 ~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  353 (447)
                      .||..|+|||++.+..++.++|+|||||++|+|++|..||...+      .......+                      
T Consensus       157 ~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~------~~~~~~~i----------------------  208 (316)
T cd05619         157 CGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHD------EEELFQSI----------------------  208 (316)
T ss_pred             cCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCC------HHHHHHHH----------------------
Confidence            78999999999998889999999999999999999999997542      11111111                      


Q ss_pred             cccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChH-HHhcCccccccc
Q 013220          354 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQ-QCLQHPWLSLRN  419 (447)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~-elL~hp~f~~~~  419 (447)
                                          ....+.++...+..+.+||.+||+.||++||++. ++++||||+...
T Consensus       209 --------------------~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~~h~~~~~~~  255 (316)
T cd05619         209 --------------------RMDNPCYPRWLTREAKDILVKLFVREPERRLGVKGDIRQHPFFREID  255 (316)
T ss_pred             --------------------HhCCCCCCccCCHHHHHHHHHHhccCHhhcCCChHHHHcCcccCCCC
Confidence                                0011112333466888999999999999999996 999999998864

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=1.8e-39  Score=323.77  Aligned_cols=291  Identities=21%  Similarity=0.323  Sum_probs=209.4

Q ss_pred             cCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           34 NGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        34 ~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      +.++|++.++||.|+||.||+|++..++..+|+|++...  ......+.+|+++++.+      +|+||++++++|... 
T Consensus         3 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~~-   75 (333)
T cd06650           3 KDDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHEC------NSPYIVGFYGAFYSD-   75 (333)
T ss_pred             chhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHC------CCCcccceeEEEEEC-
Confidence            357999999999999999999999999999999987643  23345788999999999      789999999998854 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                         .+.++||||+ +++|.+++...  ..+++..+..++.|++.||.|||++.+|+|+||||+||++             
T Consensus        76 ---~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~l~~~l~~lH~~~~ivH~dlkp~Nili-------------  137 (333)
T cd06650          76 ---GEISICMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILV-------------  137 (333)
T ss_pred             ---CEEEEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCChhhEEE-------------
Confidence               6899999999 88999888653  3488899999999999999999974379999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-  269 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-  269 (447)
                                                                                 +....++|+|||++...... 
T Consensus       138 -----------------------------------------------------------~~~~~~kL~Dfg~~~~~~~~~  158 (333)
T cd06650         138 -----------------------------------------------------------NSRGEIKLCDFGVSGQLIDSM  158 (333)
T ss_pred             -----------------------------------------------------------cCCCCEEEeeCCcchhhhhhc
Confidence                                                                       33567999999998654332 


Q ss_pred             cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhh-hCCCC
Q 013220          270 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA-IGGAQ  348 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~  348 (447)
                      .....|+..|+|||.+.+..++.++|+|||||++|+|++|+.||...+.       ..+   ...++....... .....
T Consensus       159 ~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~  228 (333)
T cd06650         159 ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPDA-------KEL---ELMFGCPVEGDPAESETS  228 (333)
T ss_pred             cccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcch-------hHH---HHHhcCcccCCccccccC
Confidence            2345789999999999988899999999999999999999999975431       111   111111110000 00000


Q ss_pred             ccchhcccchhhhhhhcc------cCchhHHhhhhc-CCCh-hhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          349 SKDYFDRHGDLKRIRRLK------FWSLDRLLVDKY-RFSE-TDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~-~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                      .... .............      ....+.+..... ..+. ..+.++.+||.+||+.||++|||++|++.||||+...
T Consensus       229 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~P~~Rpt~~ell~h~~~~~~~  306 (333)
T cd06650         229 PRPR-PPGRPLSSYGPDSRPPMAIFELLDYIVNEPPPKLPSGVFGAEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSE  306 (333)
T ss_pred             cccC-CccchhhhhcccccccccHHHHHHHHhcCCCccCCCCCcCHHHHHHHHHhccCCcccCcCHHHHhhCHHHhcCc
Confidence            0000 0000000000000      000111111111 1111 2456899999999999999999999999999998754

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=100.00  E-value=2.6e-39  Score=308.88  Aligned_cols=252  Identities=31%  Similarity=0.582  Sum_probs=201.4

Q ss_pred             eEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHH---HHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           38 YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQ---AALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        38 y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~---~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      |++.++||+|+||+||+|.+..+++.||+|++........   ....|+.+++.+      .|++|+++++.+..    .
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l------~~~~i~~~~~~~~~----~   70 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRL------RHPNIVQILDVFQD----D   70 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHH------TBTTBCHEEEEEEE----S
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhccccc------cccccccccccccc----c
Confidence            8999999999999999999999999999998876643333   334599999999      78999999999986    3


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ...++|||++ +++|..++...  ..+++..+..++.|++.||++||++ ||+|+||||+||++                
T Consensus        71 ~~~~~v~~~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~L~~Lh~~-~i~H~dikp~NIl~----------------  131 (260)
T PF00069_consen   71 NYLYIVMEYCPGGSLQDYLQKN--KPLSEEEILKIAYQILEALAYLHSK-GIVHRDIKPENILL----------------  131 (260)
T ss_dssp             SEEEEEEEEETTEBHHHHHHHH--SSBBHHHHHHHHHHHHHHHHHHHHT-TEEESSBSGGGEEE----------------
T ss_pred             cccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccc----------------
Confidence            6899999999 55999888733  4589999999999999999999997 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccc---cccc
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA---NKQF  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~---~~~~  270 (447)
                                                                              +....++|+|||.+...   ....
T Consensus       132 --------------------------------------------------------~~~~~~~l~Dfg~~~~~~~~~~~~  155 (260)
T PF00069_consen  132 --------------------------------------------------------DENGEVKLIDFGSSVKLSENNENF  155 (260)
T ss_dssp             --------------------------------------------------------STTSEEEESSGTTTEESTSTTSEB
T ss_pred             --------------------------------------------------------cccccccccccccccccccccccc
Confidence                                                                    44677899999998642   2334


Q ss_pred             ccCCCCCCccChHHhh-cCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 AEEIQTRQYRAPEVIL-RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~-~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      ....++..|+|||.+. +..++.++|+||||+++++|++|..||...      ........+.+......          
T Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~------~~~~~~~~~~~~~~~~~----------  219 (260)
T PF00069_consen  156 NPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEES------NSDDQLEIIEKILKRPL----------  219 (260)
T ss_dssp             SSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTS------SHHHHHHHHHHHHHTHH----------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccc------cchhhhhhhhhcccccc----------
Confidence            4557899999999998 677899999999999999999999999754      11222222222211100          


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                                               .............+.++|.+||+.||++|||++++++||||
T Consensus       220 -------------------------~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~l~~~~~~  260 (260)
T PF00069_consen  220 -------------------------PSSSQQSREKSEELRDLIKKMLSKDPEQRPSAEELLKHPWF  260 (260)
T ss_dssp             -------------------------HHHTTSHTTSHHHHHHHHHHHSSSSGGGSTTHHHHHTSGGG
T ss_pred             -------------------------cccccccchhHHHHHHHHHHHccCChhHCcCHHHHhcCCCC
Confidence                                     00000111124789999999999999999999999999998

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=1.2e-39  Score=329.65  Aligned_cols=252  Identities=23%  Similarity=0.388  Sum_probs=200.6

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      .++|++.+.||+|+||.||+|++..+++.||+|++....    .....+.+|+++++.+      +|+||+++++++.. 
T Consensus        42 ~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~------~hp~iv~~~~~~~~-  114 (370)
T cd05621          42 AEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFA------NSPWVVQLFCAFQD-  114 (370)
T ss_pred             HHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhC------CCCCEeeEEEEEEc-
Confidence            378999999999999999999999999999999886532    2234577899999888      89999999999874 


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                         ...+|+||||| +++|.+++...   .+++..++.++.||+.||+|||++ ||+||||||+|||+            
T Consensus       115 ---~~~~~lv~Ey~~gg~L~~~l~~~---~~~~~~~~~~~~qil~aL~~LH~~-~IvHrDLKp~NILl------------  175 (370)
T cd05621         115 ---DKYLYMVMEYMPGGDLVNLMSNY---DVPEKWAKFYTAEVVLALDAIHSM-GLIHRDVKPDNMLL------------  175 (370)
T ss_pred             ---CCEEEEEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHC-CeEecCCCHHHEEE------------
Confidence               47899999999 88999888543   488999999999999999999996 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                  +..+.+||+|||++......
T Consensus       176 ------------------------------------------------------------~~~~~~kL~DFG~a~~~~~~  195 (370)
T cd05621         176 ------------------------------------------------------------DKHGHLKLADFGTCMKMDET  195 (370)
T ss_pred             ------------------------------------------------------------CCCCCEEEEecccceecccC
Confidence                                                                        44577999999999765322


Q ss_pred             ----cccCCCCCCccChHHhhcCC----CCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          270 ----FAEEIQTRQYRAPEVILRAG----YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       270 ----~~~~~gt~~y~aPE~l~~~~----~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                          ....+||+.|+|||++.+..    ++.++|+|||||++|+|++|..||...+      .......+.....     
T Consensus       196 ~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~~------~~~~~~~i~~~~~-----  264 (370)
T cd05621         196 GMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADS------LVGTYSKIMDHKN-----  264 (370)
T ss_pred             CceecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCCC------HHHHHHHHHhCCc-----
Confidence                12457899999999997643    6789999999999999999999997553      1111111111000     


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCC--hhhHHHHHHHHhhccccCCCC--CCChHHHhcCccccc
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFS--ETDAREFAEFLVPLLDFTPEK--RPTAQQCLQHPWLSL  417 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~ll~~~L~~dP~k--Rpta~elL~hp~f~~  417 (447)
                                                         ...++  ..++..+.++|.+||+.++.+  |+|++|+++||||+.
T Consensus       265 -----------------------------------~~~~p~~~~~s~~~~~li~~~L~~~~~r~~R~~~~e~l~hp~~~~  309 (370)
T cd05621         265 -----------------------------------SLNFPEDVEISKHAKNLICAFLTDREVRLGRNGVEEIKQHPFFKN  309 (370)
T ss_pred             -----------------------------------ccCCCCcccCCHHHHHHHHHHccCchhccCCCCHHHHhcCcccCC
Confidence                                               00111  134678889999999855543  889999999999986


Q ss_pred             c
Q 013220          418 R  418 (447)
Q Consensus       418 ~  418 (447)
                      .
T Consensus       310 ~  310 (370)
T cd05621         310 D  310 (370)
T ss_pred             C
Confidence            4

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=100.00  E-value=1.9e-39  Score=318.23  Aligned_cols=281  Identities=27%  Similarity=0.473  Sum_probs=213.7

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      ++|.+.++||.|+||.||+|++..++..||+|.++...  .....+.+|+++++.+      +|+||+++++++...   
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~h~nI~~~~~~~~~~---   76 (301)
T cd07873           6 ETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDL------KHANIVTLHDIIHTE---   76 (301)
T ss_pred             cceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhc------CCCCcceEEEEEecC---
Confidence            67999999999999999999999999999999876432  2234677899999999      789999999998753   


Q ss_pred             cceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          114 GQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       114 ~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                       ...++||||++++|.+.+.... ..+++..+..++.|++.||+|||+. ||+|+||||+||++                
T Consensus        77 -~~~~lv~e~~~~~l~~~l~~~~-~~~~~~~~~~~~~qi~~aL~~lH~~-~i~H~dlkp~Nil~----------------  137 (301)
T cd07873          77 -KSLTLVFEYLDKDLKQYLDDCG-NSINMHNVKLFLFQLLRGLNYCHRR-KVLHRDLKPQNLLI----------------  137 (301)
T ss_pred             -CeEEEEEeccccCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhC-CeeCCCCCHHHEEE----------------
Confidence             6899999999878888775432 4588999999999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---c
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---F  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~  270 (447)
                                                                              +....++|+|||++......   .
T Consensus       138 --------------------------------------------------------~~~~~~kl~dfg~~~~~~~~~~~~  161 (301)
T cd07873         138 --------------------------------------------------------NERGELKLADFGLARAKSIPTKTY  161 (301)
T ss_pred             --------------------------------------------------------CCCCcEEECcCcchhccCCCCCcc
Confidence                                                                    33567999999998654322   2


Q ss_pred             ccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 AEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      ....+++.|+|||.+.+. .++.++|||||||++|+|++|+.||...+      ....+..+.+.++......+......
T Consensus       162 ~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (301)
T cd07873         162 SNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGST------VEEQLHFIFRILGTPTEETWPGILSN  235 (301)
T ss_pred             cccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHcCCCChhhchhhhcc
Confidence            234568899999998764 47889999999999999999999997653      44566667777766655443221111


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                      ..+. ... .      .....+...    .....++..+.+||.+||+.||.+|||++|+|+||||+.-
T Consensus       236 ~~~~-~~~-~------~~~~~~~~~----~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~h~~f~~~  292 (301)
T cd07873         236 EEFK-SYN-Y------PKYRADCLH----NHAPRLDSDGAELLSKLLQFEGRKRISAEEAMKHPYFHCL  292 (301)
T ss_pred             cccc-ccc-c------CccccccHH----hhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhcCcccccc
Confidence            1110 000 0      000000000    0112345678999999999999999999999999999754

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=2.9e-39  Score=313.99  Aligned_cols=249  Identities=26%  Similarity=0.352  Sum_probs=196.9

Q ss_pred             ecccCceEEEEEEeCCCCeEEEEEEechhHH----hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEE
Q 013220           44 LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ----FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCM  119 (447)
Q Consensus        44 lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~----~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~l  119 (447)
                      ||+|+||+||+|.+..+++.||+|.+.....    ..+.+..|+++++.+      +|++|+++..++..    ....++
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l------~~~~i~~~~~~~~~----~~~~~l   70 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKV------HSRFIVSLAYAFQT----KTDLCL   70 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhC------CCCcEeeeeEEEcC----CCeEEE
Confidence            6999999999999999999999998765432    234567899999999      78999999988874    368999


Q ss_pred             EEecc-cccHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCc
Q 013220          120 VLEFL-GDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL  196 (447)
Q Consensus       120 vmE~~-~~~L~~~~~~~--~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~  196 (447)
                      ||||+ +++|...+...  ....+++..+..++.||+.||+|||++ ||+||||||+||++                   
T Consensus        71 v~e~~~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~Nili-------------------  130 (280)
T cd05608          71 VMTIMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQR-RIIYRDLKPENVLL-------------------  130 (280)
T ss_pred             EEeCCCCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEE-------------------
Confidence            99999 88887766332  224588999999999999999999996 99999999999999                   


Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---cccC
Q 013220          197 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEE  273 (447)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~~~~  273 (447)
                                                                           +....++|+|||.+......   ....
T Consensus       131 -----------------------------------------------------~~~~~~~l~dfg~~~~~~~~~~~~~~~  157 (280)
T cd05608         131 -----------------------------------------------------DNDGNVRISDLGLAVELKDGQSKTKGY  157 (280)
T ss_pred             -----------------------------------------------------CCCCCEEEeeCccceecCCCCcccccc
Confidence                                                                 33567999999998654322   2234


Q ss_pred             CCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchh
Q 013220          274 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  353 (447)
Q Consensus       274 ~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  353 (447)
                      .|++.|+|||.+.+..++.++|+|||||++|+|++|+.||...+..      .....+..                    
T Consensus       158 ~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~------~~~~~~~~--------------------  211 (280)
T cd05608         158 AGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEK------VENKELKQ--------------------  211 (280)
T ss_pred             CCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcc------hhHHHHHH--------------------
Confidence            6899999999999989999999999999999999999999754311      00111110                    


Q ss_pred             cccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC-----ChHHHhcCccccccc
Q 013220          354 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRN  419 (447)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp-----ta~elL~hp~f~~~~  419 (447)
                                        .+......++...+..+.+|+.+||+.||++||     |++++++||||+...
T Consensus       212 ------------------~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~l~h~~~~~~~  264 (280)
T cd05608         212 ------------------RILNDSVTYPDKFSPASKSFCEALLAKDPEKRLGFRDGNCDGLRTHPLFRDLN  264 (280)
T ss_pred             ------------------hhcccCCCCcccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHhcChhhhcCC
Confidence                              001111123445577899999999999999999     889999999998744

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=6.5e-40  Score=325.41  Aligned_cols=244  Identities=27%  Similarity=0.404  Sum_probs=196.8

Q ss_pred             EeecccCceEEEEEEeC---CCCeEEEEEEechhH-----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           42 RKLGWGQFSIVWLAYDT---RTSSYVALKIQKSAA-----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~---~~~~~vaiK~~~~~~-----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      +.||+|+||.||+|++.   .+++.||+|+++...     .....+.+|+++++.+      +|+||+++++.|...   
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l------~hp~iv~~~~~~~~~---   72 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAV------KHPFIVDLIYAFQTG---   72 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhC------CCCchhceeeEEecC---
Confidence            67999999999999764   468899999887543     2234567899999999      789999999988753   


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                       ...|+||||+ +++|...+...  ..+.+..+..++.|++.||+|||++ ||+||||||+||++               
T Consensus        73 -~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~dlkp~Nil~---------------  133 (323)
T cd05584          73 -GKLYLILEYLSGGELFMHLERE--GIFMEDTACFYLSEISLALEHLHQQ-GIIYRDLKPENILL---------------  133 (323)
T ss_pred             -CeEEEEEeCCCCchHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHeEE---------------
Confidence             6899999999 88898887643  3478889999999999999999996 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc---cc
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQ  269 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~---~~  269 (447)
                                                                               +..+.++|+|||++....   ..
T Consensus       134 ---------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~  156 (323)
T cd05584         134 ---------------------------------------------------------DAQGHVKLTDFGLCKESIHEGTV  156 (323)
T ss_pred             ---------------------------------------------------------CCCCCEEEeeCcCCeecccCCCc
Confidence                                                                     345679999999986432   12


Q ss_pred             cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          270 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      .....|++.|+|||++.+..++.++|||||||++|+|++|..||...+      ....+..                   
T Consensus       157 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~------~~~~~~~-------------------  211 (323)
T cd05584         157 THTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAEN------RKKTIDK-------------------  211 (323)
T ss_pred             ccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCC------HHHHHHH-------------------
Confidence            233468999999999998888999999999999999999999997542      1111111                   


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC-----ChHHHhcCcccccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLR  418 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp-----ta~elL~hp~f~~~  418 (447)
                                             +......++...+..+.+||.+||+.||++||     +++++++||||+..
T Consensus       212 -----------------------~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~h~~~~~~  262 (323)
T cd05584         212 -----------------------ILKGKLNLPPYLTPEARDLLKKLLKRNPSSRLGAGPGDAAEVQSHPFFRHV  262 (323)
T ss_pred             -----------------------HHcCCCCCCCCCCHHHHHHHHHHcccCHhHcCCCCCCCHHHHhcCCCcCCC
Confidence                                   11112223445567899999999999999999     89999999999764

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-39  Score=324.25  Aligned_cols=245  Identities=26%  Similarity=0.389  Sum_probs=200.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeE-EEEEEechhHH---hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSY-VALKIQKSAAQ---FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~-vaiK~~~~~~~---~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ....+.+.||.|+||+||+|.+.  +.. ||||++.....   ..+.+.+|+.+|.++      .|||||++++++... 
T Consensus        41 ~~l~~~~~iG~G~~g~V~~~~~~--g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l------~HpNIV~f~G~~~~~-  111 (362)
T KOG0192|consen   41 DELPIEEVLGSGSFGTVYKGKWR--GTDVVAVKIISDPDFDDESRKAFRREASLLSRL------RHPNIVQFYGACTSP-  111 (362)
T ss_pred             HHhhhhhhcccCCceeEEEEEeC--CceeEEEEEecchhcChHHHHHHHHHHHHHHhC------CCCCeeeEEEEEcCC-
Confidence            45677777999999999999775  444 99998876542   256899999999999      899999999999864 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCC-cccccCCCCCeEeeecCCCCCCccc
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELG-IIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~g-IiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                       . ..+++||||+ +|+|..++.......++...+..++.+|+.|+.|||++ + ||||||||+|+|+            
T Consensus       112 -~-~~~~iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~-~~iIHrDLK~~NiLv------------  176 (362)
T KOG0192|consen  112 -P-GSLCIVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSE-GPIIHRDLKSDNILV------------  176 (362)
T ss_pred             -C-CceEEEEEeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcC-CCeeecccChhhEEE------------
Confidence             1 1699999999 99999998764446799999999999999999999996 9 9999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCccc-ceeEeecCcccccc-
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDM-RCKVVDFGNACRAN-  267 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~kL~Dfg~a~~~~-  267 (447)
                                                                                  +... ++||+|||++.... 
T Consensus       177 ------------------------------------------------------------~~~~~~~KI~DFGlsr~~~~  196 (362)
T KOG0192|consen  177 ------------------------------------------------------------DLKGKTLKIADFGLSREKVI  196 (362)
T ss_pred             ------------------------------------------------------------cCCCCEEEECCCccceeecc
Confidence                                                                        3354 89999999997554 


Q ss_pred             --cccccCCCCCCccChHHhh--cCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhh
Q 013220          268 --KQFAEEIQTRQYRAPEVIL--RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  343 (447)
Q Consensus       268 --~~~~~~~gt~~y~aPE~l~--~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  343 (447)
                        ...+...||+.|||||++.  ..+|+.|+||||||+++|+|++|..||....      . .++...+..-+       
T Consensus       197 ~~~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~------~-~~~~~~v~~~~-------  262 (362)
T KOG0192|consen  197 SKTSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLA------P-VQVASAVVVGG-------  262 (362)
T ss_pred             ccccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCC------H-HHHHHHHHhcC-------
Confidence              3334468999999999999  5689999999999999999999999998653      1 12222111111       


Q ss_pred             hCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHh
Q 013220          344 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCL  410 (447)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL  410 (447)
                                                      .++.++...+..+..|+.+||+.||.+||+..+++
T Consensus       263 --------------------------------~Rp~~p~~~~~~l~~l~~~CW~~dp~~RP~f~ei~  297 (362)
T KOG0192|consen  263 --------------------------------LRPPIPKECPPHLSSLMERCWLVDPSRRPSFLEIV  297 (362)
T ss_pred             --------------------------------CCCCCCccCCHHHHHHHHHhCCCCCCcCCCHHHHH
Confidence                                            22335566788999999999999999999999886

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=100.00  E-value=2.8e-39  Score=313.65  Aligned_cols=277  Identities=28%  Similarity=0.432  Sum_probs=208.8

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      +|++.++||.|+||.||+|++..++..||+|.++...   .....+.+|+++++.+      +|+||+++++++.+.   
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l------~h~~i~~~~~~~~~~---   71 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKEL------KHKNIVRLYDVLHSD---   71 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhc------CCCCeeeHHHHhccC---
Confidence            5999999999999999999999999999999876432   2234577899999999      789999999998753   


Q ss_pred             cceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          114 GQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       114 ~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                       ...+++|||+++++.+.+.... ..+++..++.++.||+.||+|||+. ||+|+||||+||++                
T Consensus        72 -~~~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~al~~LH~~-~i~H~dl~~~nil~----------------  132 (284)
T cd07839          72 -KKLTLVFEYCDQDLKKYFDSCN-GDIDPEIVKSFMFQLLKGLAFCHSH-NVLHRDLKPQNLLI----------------  132 (284)
T ss_pred             -CceEEEEecCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CEecCCCCHHHEEE----------------
Confidence             6899999999878887775432 4589999999999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---c
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---F  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~  270 (447)
                                                                              +....++|+|||.+......   .
T Consensus       133 --------------------------------------------------------~~~~~~~l~dfg~~~~~~~~~~~~  156 (284)
T cd07839         133 --------------------------------------------------------NKNGELKLADFGLARAFGIPVRCY  156 (284)
T ss_pred             --------------------------------------------------------cCCCcEEECccchhhccCCCCCCc
Confidence                                                                    33567999999998754422   2


Q ss_pred             ccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 AEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      ....++..|+|||.+.+. .++.++|||||||++|+|++|..||....     +....+..+.+.++..+..........
T Consensus       157 ~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (284)
T cd07839         157 SAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGN-----DVDDQLKRIFRLLGTPTEESWPGVSKL  231 (284)
T ss_pred             CCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCC-----CHHHHHHHHHHHhCCCChHHhHHhhhc
Confidence            234678899999998775 46899999999999999999999875432     344555666666665554321110000


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      ..+ .      ..     ........ -.......+.++.+||.+||+.||.+|||++++++||||
T Consensus       232 ~~~-~------~~-----~~~~~~~~-~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~h~~f  284 (284)
T cd07839         232 PDY-K------PY-----PMYPATTS-LVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQHPYF  284 (284)
T ss_pred             ccc-c------cc-----CCCCCcch-hhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhcCCCC
Confidence            000 0      00     00000000 000122356788999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>PHA03211 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=2.7e-39  Score=334.71  Aligned_cols=297  Identities=22%  Similarity=0.275  Sum_probs=210.9

Q ss_pred             CccccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeee
Q 013220           23 GYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIR  102 (447)
Q Consensus        23 ~~~~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~  102 (447)
                      .-.+..++.++.+..|.+.+.||+|+||.||+|.+..+++.||+|....     ..+.+|+++++.+      +|+||++
T Consensus       156 ~~~~~~~~~~~~~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~-----~~~~~E~~iL~~L------~HpnIv~  224 (461)
T PHA03211        156 CKPPSEVAKVVAGLGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGWY-----ASSVHEARLLRRL------SHPAVLA  224 (461)
T ss_pred             CCCccchhcccccCCeEEEEEEccCCCeEEEEEEECCCCCEEEEecccc-----cCHHHHHHHHHHC------CCCCCCc
Confidence            3455566666667889999999999999999999999999999995332     3456899999999      8899999


Q ss_pred             ecccccccCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCC
Q 013220          103 LIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTID  182 (447)
Q Consensus       103 ~~~~~~~~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~  182 (447)
                      +++++...    ...++|||++.++|...+.... ..+++..++.++.|++.||+|||++ ||+||||||+|||+     
T Consensus       225 l~~~~~~~----~~~~lv~e~~~~~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~yLH~~-gIvHrDLKP~NILl-----  293 (461)
T PHA03211        225 LLDVRVVG----GLTCLVLPKYRSDLYTYLGARL-RPLGLAQVTAVARQLLSAIDYIHGE-GIIHRDIKTENVLV-----  293 (461)
T ss_pred             EEEEEEEC----CEEEEEEEccCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CEEECcCCHHHEEE-----
Confidence            99987753    6789999999888888775432 3589999999999999999999996 99999999999999     


Q ss_pred             CCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCc
Q 013220          183 PSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGN  262 (447)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~  262 (447)
                                                                                         +....++|+|||+
T Consensus       294 -------------------------------------------------------------------~~~~~vkL~DFGl  306 (461)
T PHA03211        294 -------------------------------------------------------------------NGPEDICLGDFGA  306 (461)
T ss_pred             -------------------------------------------------------------------CCCCCEEEcccCC
Confidence                                                                               3356799999999


Q ss_pred             ccccccc-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCC-CCCchHHHHHHHHHhC
Q 013220          263 ACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQG-FCEDEDHLALMMELIG  336 (447)
Q Consensus       263 a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~-~~~~~~~~~~~~~~~g  336 (447)
                      +......     .....||..|+|||++.+..++.++|||||||++|+|++|..|+....... ......++..+++..+
T Consensus       307 a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~~~~  386 (461)
T PHA03211        307 ACFARGSWSTPFHYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQ  386 (461)
T ss_pred             ceecccccccccccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcccCCcccccCCcHHHHHHHHHhhc
Confidence            8654322     123468999999999999889999999999999999999887665433211 1122333333333322


Q ss_pred             CCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCC--hhhHHHHHHHHhhccccCCCCCCChHHHhcCcc
Q 013220          337 KMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFS--ETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW  414 (447)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~  414 (447)
                      .....+.....  ....      ..++......... ......+.  ......+.+||.+||+.||.+|||++|+|+|||
T Consensus       387 ~~~~~~~~~~~--~~l~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~dli~~mL~~DP~~RPsa~elL~hp~  457 (461)
T PHA03211        387 VHVDEFPQHAG--SRLV------SQYRHRAARNRRP-AYTRPAWTRYYKLDLDVEYLVCRALTFDGARRPSAAELLRLPL  457 (461)
T ss_pred             cccccCCCCcc--hHHH------HHHHhhhhcccCC-ccCCcchhhhccccchHHHHHHHHcccChhhCcCHHHHhhCcc
Confidence            21111100000  0000      0000000000000 00000000  123457889999999999999999999999999


Q ss_pred             ccc
Q 013220          415 LSL  417 (447)
Q Consensus       415 f~~  417 (447)
                      |+.
T Consensus       458 f~~  460 (461)
T PHA03211        458 FQS  460 (461)
T ss_pred             cCC
Confidence            975

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=2.8e-39  Score=321.49  Aligned_cols=253  Identities=23%  Similarity=0.361  Sum_probs=201.3

Q ss_pred             EeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceE
Q 013220           42 RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHL  117 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~  117 (447)
                      +.||+|+||.||+|++..+++.||+|+++...    ...+.+..|..++..+.     +|++|+++++++...    ..+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~~~i~~~~~~~~~~----~~~   71 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQAS-----SNPFLVGLHSCFQTT----SRL   71 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhc-----CCCCEeeEEEEEEeC----CEE
Confidence            46999999999999999999999999987643    23456778888888874     689999999988753    689


Q ss_pred             EEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCc
Q 013220          118 CMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL  196 (447)
Q Consensus       118 ~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~  196 (447)
                      |+||||+ +++|...+...  ..+++..++.++.|++.||+|||++ ||+||||||+||++                   
T Consensus        72 ~lv~e~~~~~~L~~~~~~~--~~l~~~~~~~~~~qi~~al~~lH~~-~ivHrDlkp~Nili-------------------  129 (327)
T cd05617          72 FLVIEYVNGGDLMFHMQRQ--RKLPEEHARFYAAEICIALNFLHER-GIIYRDLKLDNVLL-------------------  129 (327)
T ss_pred             EEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCCHHHEEE-------------------
Confidence            9999999 88998777543  3589999999999999999999996 99999999999999                   


Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc---cccccC
Q 013220          197 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEE  273 (447)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~---~~~~~~  273 (447)
                                                                           +....++|+|||++....   ......
T Consensus       130 -----------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~~~~~  156 (327)
T cd05617         130 -----------------------------------------------------DADGHIKLTDYGMCKEGLGPGDTTSTF  156 (327)
T ss_pred             -----------------------------------------------------eCCCCEEEeccccceeccCCCCceecc
Confidence                                                                 335679999999986422   223345


Q ss_pred             CCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchh
Q 013220          274 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  353 (447)
Q Consensus       274 ~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  353 (447)
                      +||+.|+|||++.+..++.++|||||||++|+|++|..||............   ..+.+                    
T Consensus       157 ~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~---~~~~~--------------------  213 (327)
T cd05617         157 CGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTE---DYLFQ--------------------  213 (327)
T ss_pred             cCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcccccH---HHHHH--------------------
Confidence            7899999999999989999999999999999999999999654321111111   11111                    


Q ss_pred             cccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCCh------HHHhcCccccccc
Q 013220          354 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA------QQCLQHPWLSLRN  419 (447)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta------~elL~hp~f~~~~  419 (447)
                                        .+......++...+..+.++|.+||+.||++|+++      +++++||||...+
T Consensus       214 ------------------~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~h~~f~~~~  267 (327)
T cd05617         214 ------------------VILEKPIRIPRFLSVKASHVLKGFLNKDPKERLGCQPQTGFSDIKSHTFFRSID  267 (327)
T ss_pred             ------------------HHHhCCCCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCHHHHHcCCCCCCCC
Confidence                              11112223455567788999999999999999985      6999999998764

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=100.00  E-value=4.6e-39  Score=312.13  Aligned_cols=277  Identities=27%  Similarity=0.444  Sum_probs=208.3

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      .|++.+.||+|++|.||+|++..++..||+|.++...   .....+.+|+.+++.+      +|+||+++++.+..    
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~----   70 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKEL------QHPNIVCLQDVLMQ----   70 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhc------CCCCEeeeEEEEee----
Confidence            4899999999999999999999999999999876432   2235678899999999      78999999999875    


Q ss_pred             cceEEEEEecccccHHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFLGDSLLRLIKYSR-YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~~~~L~~~~~~~~-~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      +...++||||+.+++...+.... ...+++..++.++.|++.||+|||+. ||+|+||||+||++               
T Consensus        71 ~~~~~~v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~-~i~H~dl~p~nil~---------------  134 (285)
T cd07861          71 ESRLYLIFEFLSMDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSR-RVLHRDLKPQNLLI---------------  134 (285)
T ss_pred             CCeEEEEEecCCCCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhC-CeeecCCCHHHEEE---------------
Confidence            36899999999778877775432 24588999999999999999999996 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---  269 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---  269 (447)
                                                                               +..+.++|+|||++.....+   
T Consensus       135 ---------------------------------------------------------~~~~~~~l~dfg~~~~~~~~~~~  157 (285)
T cd07861         135 ---------------------------------------------------------DNKGVIKLADFGLARAFGIPVRV  157 (285)
T ss_pred             ---------------------------------------------------------cCCCcEEECcccceeecCCCccc
Confidence                                                                     34567999999998654322   


Q ss_pred             cccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          270 FAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      .....+++.|+|||.+.+. .++.++|+|||||++|+|++|+.||...+      ....+..+.+..+...+........
T Consensus       158 ~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  231 (285)
T cd07861         158 YTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDS------EIDQLFRIFRILGTPTEDVWPGVTS  231 (285)
T ss_pred             ccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCC------HHHHHHHHHHHhCCCChhhhhcchh
Confidence            2234568899999998764 47899999999999999999999997652      3344445555555544433221111


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      ...+.....      .   .... ....   ....++.++.+||.+||+.||++|||+.++++||||
T Consensus       232 ~~~~~~~~~------~---~~~~-~~~~---~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~~~~~  285 (285)
T cd07861         232 LPDYKNTFP------K---WKKG-SLRS---AVKNLDEDGLDLLEKMLIYDPAKRISAKKALNHPYF  285 (285)
T ss_pred             hHHHHhhcc------c---cCcc-hhHH---hcCCCCHHHHHHHHHHhcCChhhCCCHHHHhcCCCC
Confidence            111100000      0   0000 0000   112356788899999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=2.1e-39  Score=321.86  Aligned_cols=251  Identities=25%  Similarity=0.358  Sum_probs=201.6

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      .|.+.+.||+|+||+||+|++..+++.||+|++....    ...+.+..|.++++.+.     +|++|++++.++...  
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~-----~~~~i~~~~~~~~~~--   73 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQD-----KPPFLTQLHSCFQTV--   73 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcc-----CCCchhheeeEEecC--
Confidence            4788999999999999999999999999999887543    22345677888887774     567888888887753  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                        +.+|+||||+ +++|.+.+...  ..+++..+..++.|++.||+|||++ ||+||||||+||++              
T Consensus        74 --~~~~lv~Ey~~~g~L~~~i~~~--~~l~~~~~~~i~~qi~~al~~lH~~-~ivHrDikp~Nill--------------  134 (323)
T cd05615          74 --DRLYFVMEYVNGGDLMYHIQQV--GKFKEPQAVFYAAEISVGLFFLHRR-GIIYRDLKLDNVML--------------  134 (323)
T ss_pred             --CEEEEEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCCHHHeEE--------------
Confidence              6899999999 88998887643  3489999999999999999999996 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc---
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---  268 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~---  268 (447)
                                                                                +....++|+|||++.....   
T Consensus       135 ----------------------------------------------------------~~~~~ikL~Dfg~~~~~~~~~~  156 (323)
T cd05615         135 ----------------------------------------------------------DSEGHIKIADFGMCKEHMVDGV  156 (323)
T ss_pred             ----------------------------------------------------------CCCCCEEEeccccccccCCCCc
Confidence                                                                      3456799999999864321   


Q ss_pred             ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          269 QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       269 ~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      ......||+.|+|||++.+..++.++|+|||||++|+|++|..||...+      .......+.                
T Consensus       157 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~------~~~~~~~i~----------------  214 (323)
T cd05615         157 TTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGED------EDELFQSIM----------------  214 (323)
T ss_pred             cccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCC------HHHHHHHHH----------------
Confidence            1223468999999999998889999999999999999999999997542      111111111                


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCC-----hHHHhcCccccccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLRN  419 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpt-----a~elL~hp~f~~~~  419 (447)
                                                .....++...+..+.+++.+||+.||.+|++     .+++++||||+...
T Consensus       215 --------------------------~~~~~~p~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~h~~f~~~~  264 (323)
T cd05615         215 --------------------------EHNVSYPKSLSKEAVSICKGLMTKHPSKRLGCGPEGERDIREHAFFRRID  264 (323)
T ss_pred             --------------------------hCCCCCCccCCHHHHHHHHHHcccCHhhCCCCCCCCHHHHhcCcccCCCC
Confidence                                      1122234445678899999999999999997     47899999999754

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=100.00  E-value=4.1e-39  Score=313.88  Aligned_cols=260  Identities=28%  Similarity=0.381  Sum_probs=204.7

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      .|++.+.||+|+||+||+|.+..+++.||+|.+....    .....+.+|+.+++.+      +|++|+++++.+..   
T Consensus         1 ~f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l------~~~~i~~~~~~~~~---   71 (285)
T cd05630           1 TFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKV------NSRFVVSLAYAYET---   71 (285)
T ss_pred             CceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhC------CCCCeeeeeEEEec---
Confidence            3788899999999999999999999999999876432    2234567899999998      78899999988874   


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                       .+..++||||+ +++|.+.+.......+++..+..++.|++.||.|||+. ||+||||||+||++              
T Consensus        72 -~~~~~lv~e~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~-~iiH~dikp~Nil~--------------  135 (285)
T cd05630          72 -KDALCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQE-RIVYRDLKPENILL--------------  135 (285)
T ss_pred             -CCEEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC-CEEeCCCCHHHEEE--------------
Confidence             36899999999 88898887554445689999999999999999999996 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc--c
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--Q  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~--~  269 (447)
                                                                                +....++|+|||++.....  .
T Consensus       136 ----------------------------------------------------------~~~~~~~l~Dfg~~~~~~~~~~  157 (285)
T cd05630         136 ----------------------------------------------------------DDHGHIRISDLGLAVHVPEGQT  157 (285)
T ss_pred             ----------------------------------------------------------CCCCCEEEeeccceeecCCCcc
Confidence                                                                      3356699999999865432  2


Q ss_pred             cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          270 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      .....|+..|+|||++.+..++.++|+||+||++|+|++|..||......      .............+          
T Consensus       158 ~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~------~~~~~~~~~~~~~~----------  221 (285)
T cd05630         158 IKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKK------IKREEVERLVKEVQ----------  221 (285)
T ss_pred             ccCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCcc------chHHHHHhhhhhhh----------
Confidence            23357899999999999888999999999999999999999999754210      00011111000000          


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCC-----hHHHhcCcccccccCCcc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLRNSTRD  423 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpt-----a~elL~hp~f~~~~~~~~  423 (447)
                                                  ..++...+..+.+||.+||+.||++|||     ++|+++||||+..+....
T Consensus       222 ----------------------------~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~~~~~h~~~~~~~~~~~  272 (285)
T cd05630         222 ----------------------------EEYSEKFSPDARSLCKMLLCKDPKERLGCQGGGAREVKEHPLFKQINFKRL  272 (285)
T ss_pred             ----------------------------hhcCccCCHHHHHHHHHHhhcCHHHccCCCCCchHHHHcChhhhccCHHHH
Confidence                                        0122334567899999999999999999     999999999997654433

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=2e-39  Score=326.67  Aligned_cols=251  Identities=23%  Similarity=0.405  Sum_probs=199.7

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      +.|++.+.||+|+||+||+|++..+++.||+|++....    .....+.+|++++..+      +|++|+++++.+..  
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~iv~~~~~~~~--   72 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEA------DGAWVVKMFYSFQD--   72 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhC------CCCCEeeEEEEEEc--
Confidence            36999999999999999999999999999999887543    2345677899999888      78999999998874  


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                        ...+|+||||+ +++|.+.+...  ..+++..++.++.|++.||+|||+. ||+||||||+||++             
T Consensus        73 --~~~~~lv~E~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~~L~~lH~~-givHrDLkp~NIli-------------  134 (360)
T cd05627          73 --KRNLYLIMEFLPGGDMMTLLMKK--DTLSEEATQFYIAETVLAIDAIHQL-GFIHRDIKPDNLLL-------------  134 (360)
T ss_pred             --CCEEEEEEeCCCCccHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEccCCCHHHEEE-------------
Confidence              46899999999 88999888643  3489999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-  269 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-  269 (447)
                                                                                 +..+.++|+|||++...... 
T Consensus       135 -----------------------------------------------------------~~~~~vkL~DfG~~~~~~~~~  155 (360)
T cd05627         135 -----------------------------------------------------------DAKGHVKLSDFGLCTGLKKAH  155 (360)
T ss_pred             -----------------------------------------------------------CCCCCEEEeeccCCccccccc
Confidence                                                                       34567999999987533210 


Q ss_pred             -------------------------------------cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCC
Q 013220          270 -------------------------------------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDML  312 (447)
Q Consensus       270 -------------------------------------~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~P  312 (447)
                                                           ....+||+.|+|||++.+..++.++|+|||||++|+|++|..|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~P  235 (360)
T cd05627         156 RTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPP  235 (360)
T ss_pred             ccccccccccCCcccccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccCCCC
Confidence                                                 1134689999999999998999999999999999999999999


Q ss_pred             CCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCCh--hhHHHHHH
Q 013220          313 FAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSE--TDAREFAE  390 (447)
Q Consensus       313 f~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~  390 (447)
                      |...+      .......+...    .                                    ....++.  ..++++.+
T Consensus       236 f~~~~------~~~~~~~i~~~----~------------------------------------~~~~~p~~~~~s~~~~~  269 (360)
T cd05627         236 FCSET------PQETYRKVMNW----K------------------------------------ETLVFPPEVPISEKAKD  269 (360)
T ss_pred             CCCCC------HHHHHHHHHcC----C------------------------------------CceecCCCCCCCHHHHH
Confidence            97653      11111111100    0                                    0001111  24568889


Q ss_pred             HHhhccccCCCCCC---ChHHHhcCcccccc
Q 013220          391 FLVPLLDFTPEKRP---TAQQCLQHPWLSLR  418 (447)
Q Consensus       391 ll~~~L~~dP~kRp---ta~elL~hp~f~~~  418 (447)
                      ||.+|+ .||.+|+   ++.++++||||+..
T Consensus       270 li~~l~-~~p~~R~~~~~~~ei~~hp~f~~~  299 (360)
T cd05627         270 LILRFC-TDSENRIGSNGVEEIKSHPFFEGV  299 (360)
T ss_pred             HHHHhc-cChhhcCCCCCHHHHhcCCCCCCC
Confidence            999987 4999998   47999999999875

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=1.3e-39  Score=327.29  Aligned_cols=253  Identities=28%  Similarity=0.418  Sum_probs=197.5

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      +.|.+.++||+|+||+||+|++..+++.||||++...  ......+.+|+++++.+      +|+||+++++++..    
T Consensus        74 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~----  143 (353)
T PLN00034         74 SELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDV------NHPNVVKCHDMFDH----  143 (353)
T ss_pred             HHHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhC------CCCCcceeeeEecc----
Confidence            5789999999999999999999999999999987543  23356788999999999      78999999998875    


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      ...+++||||+ +++|...      ...++..+..++.||+.||+|||++ ||+||||||+||++               
T Consensus       144 ~~~~~lv~e~~~~~~L~~~------~~~~~~~~~~i~~qi~~aL~~LH~~-~ivHrDlkp~NIll---------------  201 (353)
T PLN00034        144 NGEIQVLLEFMDGGSLEGT------HIADEQFLADVARQILSGIAYLHRR-HIVHRDIKPSNLLI---------------  201 (353)
T ss_pred             CCeEEEEEecCCCCccccc------ccCCHHHHHHHHHHHHHHHHHHHHC-CEeecCCCHHHEEE---------------
Confidence            36899999999 7777532      2256778889999999999999996 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---  269 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---  269 (447)
                                                                               +....+||+|||++......   
T Consensus       202 ---------------------------------------------------------~~~~~~kL~DfG~~~~~~~~~~~  224 (353)
T PLN00034        202 ---------------------------------------------------------NSAKNVKIADFGVSRILAQTMDP  224 (353)
T ss_pred             ---------------------------------------------------------cCCCCEEEcccccceeccccccc
Confidence                                                                     34567999999998754432   


Q ss_pred             cccCCCCCCccChHHhhc-----CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhh
Q 013220          270 FAEEIQTRQYRAPEVILR-----AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  344 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~-----~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (447)
                      ....+|+..|+|||++..     ...+.++|||||||++|+|++|+.||.....      ......+.....        
T Consensus       225 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~------~~~~~~~~~~~~--------  290 (353)
T PLN00034        225 CNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQ------GDWASLMCAICM--------  290 (353)
T ss_pred             ccccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCC------ccHHHHHHHHhc--------
Confidence            234578999999999853     2345789999999999999999999973311      001111111000        


Q ss_pred             CCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          345 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                                                    ......+...+.++.+||.+||+.||++|||++|+|+||||.....+
T Consensus       291 ------------------------------~~~~~~~~~~~~~l~~li~~~l~~~P~~Rpt~~ell~hp~~~~~~~~  337 (353)
T PLN00034        291 ------------------------------SQPPEAPATASREFRHFISCCLQREPAKRWSAMQLLQHPFILRAQPG  337 (353)
T ss_pred             ------------------------------cCCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHhcCcccccCCcc
Confidence                                          00111233456789999999999999999999999999999976433

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=100.00  E-value=2.8e-39  Score=311.51  Aligned_cols=257  Identities=27%  Similarity=0.439  Sum_probs=203.4

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC-
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN-  113 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~-  113 (447)
                      .++|.+.+.||.|+||.||+|++..+++.||+|++.........+..|+++++.+.     +|+||+++++.+...... 
T Consensus         5 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~~~-----~h~~i~~~~~~~~~~~~~~   79 (272)
T cd06637           5 AGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYS-----HHRNIATYYGAFIKKNPPG   79 (272)
T ss_pred             hhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCCccHHHHHHHHHHHHHhc-----CCCCeeeEeeEEeecCCCC
Confidence            47899999999999999999999999999999988765555567888999998874     689999999998764332 


Q ss_pred             -cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          114 -GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       114 -~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                       ....+++|||+ +++|.+++.......+++..+..++.|++.||+|||++ +|+|+|+||+||++.             
T Consensus        80 ~~~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~-~ivh~dl~~~nili~-------------  145 (272)
T cd06637          80 MDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQH-KVIHRDIKGQNVLLT-------------  145 (272)
T ss_pred             CCcEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC-CCccCCCCHHHEEEC-------------
Confidence             25799999999 77899888764445688999999999999999999996 999999999999993             


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                 ....++|+|||++......  
T Consensus       146 -----------------------------------------------------------~~~~~~l~Dfg~~~~~~~~~~  166 (272)
T cd06637         146 -----------------------------------------------------------ENAEVKLVDFGVSAQLDRTVG  166 (272)
T ss_pred             -----------------------------------------------------------CCCCEEEccCCCceecccccc
Confidence                                                                       3556999999998754322  


Q ss_pred             -cccCCCCCCccChHHhh-----cCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhh
Q 013220          270 -FAEEIQTRQYRAPEVIL-----RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  343 (447)
Q Consensus       270 -~~~~~gt~~y~aPE~l~-----~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  343 (447)
                       .....|+..|+|||++.     +..++.++|+|||||++|+|++|..||...+.         ............    
T Consensus       167 ~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~---------~~~~~~~~~~~~----  233 (272)
T cd06637         167 RRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHP---------MRALFLIPRNPA----  233 (272)
T ss_pred             cCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccCH---------HHHHHHHhcCCC----
Confidence             22346889999999986     33578899999999999999999999964321         011110000000    


Q ss_pred             hCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          344 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                                                       ....+...+..+.+||.+||..||.+|||+.+++.||||
T Consensus       234 ---------------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~~~~  272 (272)
T cd06637         234 ---------------------------------PRLKSKKWSKKFQSFIESCLVKNHSQRPTTEQLMKHPFI  272 (272)
T ss_pred             ---------------------------------CCCCCCCcCHHHHHHHHHHcCCChhhCCCHHHHhhCCCC
Confidence                                             000112335688999999999999999999999999998

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=1.2e-39  Score=323.47  Aligned_cols=245  Identities=26%  Similarity=0.363  Sum_probs=193.2

Q ss_pred             EeecccCceEEEEEEeCCCCeEEEEEEechhHH----hHHHHHHHHH-HHHHhhcCCCCCcceeeeecccccccCCCcce
Q 013220           42 RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ----FAQAALHEIE-VLSAVADGDPSNEKCVIRLIDHFKHAGPNGQH  116 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~----~~~~~~~E~~-~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~  116 (447)
                      +.||+|+||+||+|++..+++.||+|++.....    ....+..|.. +++.+      +|+||+++++.+..    ...
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l------~hp~iv~~~~~~~~----~~~   70 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNV------KHPFLVGLHYSFQT----ADK   70 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhC------CCCCCCCeeEEEEe----CCE
Confidence            368999999999999999999999998875432    2233444444 34555      89999999998874    368


Q ss_pred             EEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCC
Q 013220          117 LCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI  195 (447)
Q Consensus       117 ~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~  195 (447)
                      .|+||||+ +++|...+...  ..+++..+..++.||+.||+|||++ ||+||||||+||++                  
T Consensus        71 ~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-givH~dikp~NIll------------------  129 (323)
T cd05575          71 LYFVLDYVNGGELFFHLQRE--RSFPEPRARFYAAEIASALGYLHSL-NIIYRDLKPENILL------------------  129 (323)
T ss_pred             EEEEEcCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEeCCCCHHHeEE------------------
Confidence            99999999 88898877643  3588999999999999999999996 99999999999999                  


Q ss_pred             cCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc---ccccc
Q 013220          196 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAE  272 (447)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~---~~~~~  272 (447)
                                                                            +.++.++|+|||++....   .....
T Consensus       130 ------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~~~~  155 (323)
T cd05575         130 ------------------------------------------------------DSQGHVVLTDFGLCKEGIEHSKTTST  155 (323)
T ss_pred             ------------------------------------------------------CCCCcEEEeccCCCcccccCCCcccc
Confidence                                                                  445679999999986432   22234


Q ss_pred             CCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccch
Q 013220          273 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  352 (447)
Q Consensus       273 ~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  352 (447)
                      .+||+.|+|||++.+..++.++|||||||++|+|++|..||...+      .......                      
T Consensus       156 ~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~------~~~~~~~----------------------  207 (323)
T cd05575         156 FCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRD------TAEMYDN----------------------  207 (323)
T ss_pred             ccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCCC------HHHHHHH----------------------
Confidence            578999999999998889999999999999999999999997542      1111111                      


Q ss_pred             hcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCCh----HHHhcCccccccc
Q 013220          353 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA----QQCLQHPWLSLRN  419 (447)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta----~elL~hp~f~~~~  419 (447)
                                          ++......+...+..+.+||.+||+.||.+||++    .++++||||....
T Consensus       208 --------------------i~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~il~~~~~~~~~  258 (323)
T cd05575         208 --------------------ILNKPLRLKPNISVSARHLLEGLLQKDRTKRLGAKDDFLEIKNHVFFSSIN  258 (323)
T ss_pred             --------------------HHcCCCCCCCCCCHHHHHHHHHHhhcCHHhCCCCCCCHHHHHcCCCcCCCC
Confidence                                1111122334456789999999999999999998    6999999997643

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1e-38  Score=318.04  Aligned_cols=257  Identities=21%  Similarity=0.309  Sum_probs=197.7

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|++.+.||+|+||+||+|++..+++.||+|++....    .....+.+|..+++.+      +|++|++++.++..  
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i~~~~~~~~~--   72 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNG------DRRWITNLHYAFQD--   72 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhC------CCCCCCceEEEEec--
Confidence            47999999999999999999999999999999987532    2234577888888887      78999999998874  


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                        ..++|+||||+ +++|.+++... ...+++..++.++.||+.||+|||++ ||+||||||+|||+             
T Consensus        73 --~~~~~lv~e~~~g~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~dlkp~Nill-------------  135 (331)
T cd05597          73 --ENNLYLVMDYYVGGDLLTLLSKF-EDRLPEDMARFYLAEMVLAIDSVHQL-GYVHRDIKPDNVLL-------------  135 (331)
T ss_pred             --CCeEEEEEecCCCCcHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhC-CeEECCCCHHHEEE-------------
Confidence              46899999999 88999888642 24589999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF  270 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~  270 (447)
                                                                                 +..+.++|+|||++.......
T Consensus       136 -----------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~  156 (331)
T cd05597         136 -----------------------------------------------------------DKNGHIRLADFGSCLRLLADG  156 (331)
T ss_pred             -----------------------------------------------------------CCCCCEEEEECCceeecCCCC
Confidence                                                                       345679999999986543221


Q ss_pred             ----ccCCCCCCccChHHhhc-----CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          271 ----AEEIQTRQYRAPEVILR-----AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       271 ----~~~~gt~~y~aPE~l~~-----~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                          ...+||+.|+|||++..     ..++.++|||||||++|+|++|+.||...+      .......+.......+  
T Consensus       157 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~------~~~~~~~i~~~~~~~~--  228 (331)
T cd05597         157 TVQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAES------LVETYGKIMNHKEHFQ--  228 (331)
T ss_pred             CccccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCCCC------HHHHHHHHHcCCCccc--
Confidence                12368999999999973     346889999999999999999999997542      1111111110000000  


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCC--CCChHHHhcCccccccc
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEK--RPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~k--Rpta~elL~hp~f~~~~  419 (447)
                                                         -.......++.+.+||.+||..++++  |++++++++||||....
T Consensus       229 -----------------------------------~~~~~~~~~~~~~~li~~ll~~~~~r~~r~~~~~~l~hp~~~~~~  273 (331)
T cd05597         229 -----------------------------------FPPDVTDVSEEAKDLIRRLICSPETRLGRNGLQDFKDHPFFEGID  273 (331)
T ss_pred             -----------------------------------CCCccCCCCHHHHHHHHHHccCcccccCCCCHHHHhcCCCCCCCC
Confidence                                               00011224678899999988764444  78999999999998653

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=100.00  E-value=6.2e-40  Score=306.62  Aligned_cols=298  Identities=29%  Similarity=0.404  Sum_probs=225.4

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCC----eEEEEEEechhHH---hHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTS----SYVALKIQKSAAQ---FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~----~~vaiK~~~~~~~---~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      ..|++.++||+|+||.||+|...+++    +.||||.++..++   .....-+|+.+++.+      .|+||+.+..+|.
T Consensus        24 ~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl------~h~nvi~Lv~Vfl   97 (438)
T KOG0666|consen   24 FEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLREL------KHPNVISLVKVFL   97 (438)
T ss_pred             HHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHh------cCCcchhHHHHHh
Confidence            46999999999999999999554442    3789998776532   244667899999999      8899999999998


Q ss_pred             ccCCCcceEEEEEecccccHHHHHHhhc---cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCC
Q 013220          109 HAGPNGQHLCMVLEFLGDSLLRLIKYSR---YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK  185 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~~~~L~~~~~~~~---~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~  185 (447)
                      ..   ...+++++||...+|..++...+   .+.++...++.++.||+.|+.|||++ .|+|||+||.|||+..+.    
T Consensus        98 ~~---d~~v~l~fdYAEhDL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~N-WvlHRDLKPaNIlvmgdg----  169 (438)
T KOG0666|consen   98 SH---DKKVWLLFDYAEHDLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSN-WVLHRDLKPANILVMGDG----  169 (438)
T ss_pred             cc---CceEEEEehhhhhhHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhh-heeeccCCcceEEEeccC----
Confidence            63   46899999999999999986543   23488889999999999999999998 999999999999995421    


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccc
Q 013220          186 DPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR  265 (447)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~  265 (447)
                                                                                      ...+++|++|||++..
T Consensus       170 ----------------------------------------------------------------perG~VKIaDlGlaR~  185 (438)
T KOG0666|consen  170 ----------------------------------------------------------------PERGRVKIADLGLARL  185 (438)
T ss_pred             ----------------------------------------------------------------CccCeeEeecccHHHH
Confidence                                                                            1247899999999987


Q ss_pred             cccccccC------CCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCC---CCchHHHHHHHHHh
Q 013220          266 ANKQFAEE------IQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGF---CEDEDHLALMMELI  335 (447)
Q Consensus       266 ~~~~~~~~------~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~---~~~~~~~~~~~~~~  335 (447)
                      ...+....      +-|.+|+|||.+.|. .||.+.|+|+.|||+.+|++-...|.+...+-.   .-..+++..+++++
T Consensus       186 ~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g~E~k~~~~~Pfq~dQl~rIf~vL  265 (438)
T KOG0666|consen  186 FNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKGREEKIKTKNPFQHDQLDRIFEVL  265 (438)
T ss_pred             hhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCccccchhhhcccCCCchHHHHHHHHHHc
Confidence            66554332      558999999999997 489999999999999999999999987642211   23678899999999


Q ss_pred             CCCCHHhhhCCCCccchhcccchhhhhh--hcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCc
Q 013220          336 GKMPRKIAIGGAQSKDYFDRHGDLKRIR--RLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP  413 (447)
Q Consensus       336 g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp  413 (447)
                      |.+....+....+.-++-   ..+..++  .....++.+.....    ..-++...+||.+||+.||.+|+|++|+|+|+
T Consensus       266 G~Pt~~~Wp~lkk~Pe~q---~~ls~f~~~~~~n~sL~~~~~~~----k~k~~~a~~LL~klL~yDP~kRIta~qAleh~  338 (438)
T KOG0666|consen  266 GTPTDKDWPDLKKMPEYQ---TLLSDFRRHYYDNVSLHKYYHKH----KVKDPSALDLLQKLLTYDPIKRITAEQALEHP  338 (438)
T ss_pred             CCCccccchhhhhCcchH---HHHHHhHHhhcCcchHHHHHHHh----cCCCchHHHHHHHHhccCchhhccHHHHhccc
Confidence            998865432222222221   1111111  11111233322221    11133477999999999999999999999999


Q ss_pred             ccccc
Q 013220          414 WLSLR  418 (447)
Q Consensus       414 ~f~~~  418 (447)
                      ||+..
T Consensus       339 yF~~d  343 (438)
T KOG0666|consen  339 YFTED  343 (438)
T ss_pred             ccccC
Confidence            99975

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=100.00  E-value=1.7e-38  Score=309.40  Aligned_cols=259  Identities=27%  Similarity=0.373  Sum_probs=205.1

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      .|+..+.||+|+||+||+|.+..+++.||+|.+....    .....+.+|+++++.+      +|++|+.++..+..   
T Consensus         1 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l------~~~~i~~~~~~~~~---   71 (285)
T cd05632           1 TFRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKV------NSQFVVNLAYAYET---   71 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHc------CCcCceeEEEEEec---
Confidence            3788899999999999999999999999999876542    2234567899999999      78899999888764   


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                       ++..+++|||+ +++|...+.......+++..+..++.|++.||.|||+. ||+||||||+||++              
T Consensus        72 -~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~-~iiH~dikp~Nili--------------  135 (285)
T cd05632          72 -KDALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRE-NTVYRDLKPENILL--------------  135 (285)
T ss_pred             -CCEEEEEEEeccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC-CeeecCCCHHHEEE--------------
Confidence             46899999999 77888777544434689999999999999999999996 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc--c
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--Q  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~--~  269 (447)
                                                                                +....++|+|||++.....  .
T Consensus       136 ----------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~  157 (285)
T cd05632         136 ----------------------------------------------------------DDYGHIRISDLGLAVKIPEGES  157 (285)
T ss_pred             ----------------------------------------------------------CCCCCEEEecCCcceecCCCCc
Confidence                                                                      3356799999999865432  2


Q ss_pred             cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          270 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      .....|+..|+|||.+.+..++.++|+|||||++|+|++|..||....      .......+......            
T Consensus       158 ~~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~------~~~~~~~~~~~~~~------------  219 (285)
T cd05632         158 IRGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRK------EKVKREEVDRRVLE------------  219 (285)
T ss_pred             ccCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHhhhc------------
Confidence            234578999999999988889999999999999999999999997542      11111111111100            


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCC-----hHHHhcCcccccccCCc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLRNSTR  422 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpt-----a~elL~hp~f~~~~~~~  422 (447)
                                                ....++...+..+.+|+.+||+.||++|||     +.++++||||+....+.
T Consensus       220 --------------------------~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~~~~~~~~~~~  271 (285)
T cd05632         220 --------------------------TEEVYSAKFSEEAKSICKMLLTKDPKQRLGCQEEGAGEVKRHPFFRNMNFKR  271 (285)
T ss_pred             --------------------------cccccCccCCHHHHHHHHHHccCCHhHcCCCcccChHHHHcChhhhcCCHHH
Confidence                                      001123344667889999999999999999     89999999999875443

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=100.00  E-value=1.1e-38  Score=309.43  Aligned_cols=257  Identities=27%  Similarity=0.440  Sum_probs=203.5

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC--
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP--  112 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~--  112 (447)
                      .+.|++.+.||.|+||.||+|++..+++.||+|+..........+..|+.+++.+.     +|+||+++++.+.....  
T Consensus        15 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~~~-----~h~~i~~~~~~~~~~~~~~   89 (282)
T cd06636          15 AGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYS-----HHRNIATYYGAFIKKSPPG   89 (282)
T ss_pred             hhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecChHHHHHHHHHHHHHHHhc-----CCCcEEEEeeehhcccccC
Confidence            37899999999999999999999999999999988766555567888999998885     78999999999865322  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                      .+...+++|||+ +++|.+++.......+++..+..++.|++.||+|||+. ||+|+|++|+||++.             
T Consensus        90 ~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~-~ivH~dl~~~nili~-------------  155 (282)
T cd06636          90 HDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAH-KVIHRDIKGQNVLLT-------------  155 (282)
T ss_pred             CCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEEC-------------
Confidence            346899999999 77898888765545588888999999999999999996 999999999999993             


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                 ....++|+|||.+......  
T Consensus       156 -----------------------------------------------------------~~~~~~l~dfg~~~~~~~~~~  176 (282)
T cd06636         156 -----------------------------------------------------------ENAEVKLVDFGVSAQLDRTVG  176 (282)
T ss_pred             -----------------------------------------------------------CCCCEEEeeCcchhhhhcccc
Confidence                                                                       3456999999998654322  


Q ss_pred             -cccCCCCCCccChHHhh-----cCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhh
Q 013220          270 -FAEEIQTRQYRAPEVIL-----RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  343 (447)
Q Consensus       270 -~~~~~gt~~y~aPE~l~-----~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  343 (447)
                       .....++..|+|||.+.     +..++.++|+|||||++|+|++|..||.....         ...+.......+..  
T Consensus       177 ~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~---------~~~~~~~~~~~~~~--  245 (282)
T cd06636         177 RRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHP---------MRALFLIPRNPPPK--  245 (282)
T ss_pred             CCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccCH---------HhhhhhHhhCCCCC--
Confidence             23346889999999986     34578899999999999999999999964421         01111100000000  


Q ss_pred             hCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          344 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                                                         ......+..+.+||.+||+.||.+|||+.|+|+||||
T Consensus       246 -----------------------------------~~~~~~~~~~~~li~~cl~~~p~~Rp~~~ell~~~~~  282 (282)
T cd06636         246 -----------------------------------LKSKKWSKKFIDFIEGCLVKNYLSRPSTEQLLKHPFI  282 (282)
T ss_pred             -----------------------------------CcccccCHHHHHHHHHHhCCChhhCcCHHHHhcCCCC
Confidence                                               0112345689999999999999999999999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=9.5e-39  Score=323.29  Aligned_cols=254  Identities=24%  Similarity=0.378  Sum_probs=199.1

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      .++|++.+.||+|+||.||+|++..+++.||+|++....    .....+.+|+++++.+      +|+||+++++.+.. 
T Consensus        42 ~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~------~hp~iv~~~~~~~~-  114 (371)
T cd05622          42 AEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFA------NSPWVVQLFYAFQD-  114 (371)
T ss_pred             hhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhC------CCCCCCeEEEEEEc-
Confidence            378999999999999999999999999999999886432    2234567888999888      88999999998874 


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                         +..+|+||||+ +++|.+++...   .+++..++.++.||+.||+|||++ ||+||||||+||++            
T Consensus       115 ---~~~~~lv~Ey~~gg~L~~~~~~~---~~~~~~~~~~~~qi~~aL~~LH~~-~ivHrDLkp~NIll------------  175 (371)
T cd05622         115 ---DRYLYMVMEYMPGGDLVNLMSNY---DVPEKWARFYTAEVVLALDAIHSM-GFIHRDVKPDNMLL------------  175 (371)
T ss_pred             ---CCEEEEEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHC-CEEeCCCCHHHEEE------------
Confidence               47899999999 88998887542   488999999999999999999996 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                  +..+.++|+|||++......
T Consensus       176 ------------------------------------------------------------~~~~~ikL~DfG~a~~~~~~  195 (371)
T cd05622         176 ------------------------------------------------------------DKSGHLKLADFGTCMKMNKE  195 (371)
T ss_pred             ------------------------------------------------------------CCCCCEEEEeCCceeEcCcC
Confidence                                                                        34567999999999755422


Q ss_pred             ----cccCCCCCCccChHHhhcCC----CCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          270 ----FAEEIQTRQYRAPEVILRAG----YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       270 ----~~~~~gt~~y~aPE~l~~~~----~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                          ....+||+.|+|||++.+..    ++.++|||||||++|+|++|..||...+      .......++......   
T Consensus       196 ~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~------~~~~~~~i~~~~~~~---  266 (371)
T cd05622         196 GMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADS------LVGTYSKIMNHKNSL---  266 (371)
T ss_pred             CcccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCCC------HHHHHHHHHcCCCcc---
Confidence                22457899999999997643    7899999999999999999999997653      111111111100000   


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCC--CCChHHHhcCcccccc
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEK--RPTAQQCLQHPWLSLR  418 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~k--Rpta~elL~hp~f~~~  418 (447)
                                                         ........+..+.+||.+||..++.+  |++++++++||||+..
T Consensus       267 -----------------------------------~~~~~~~~s~~~~~li~~~L~~~~~r~~r~~~~ei~~h~~~~~~  310 (371)
T cd05622         267 -----------------------------------TFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHLFFKND  310 (371)
T ss_pred             -----------------------------------cCCCcCCCCHHHHHHHHHHcCChhhhcCCCCHHHHhcCcccCCC
Confidence                                               00011235678899999999844433  7899999999999864

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=1.4e-39  Score=322.20  Aligned_cols=244  Identities=30%  Similarity=0.428  Sum_probs=196.8

Q ss_pred             EeecccCceEEEEEEeC---CCCeEEEEEEechhHH---hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           42 RKLGWGQFSIVWLAYDT---RTSSYVALKIQKSAAQ---FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~---~~~~~vaiK~~~~~~~---~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      +.||+|+||.||++++.   .++..||+|+++....   ....+..|+++++.+      +|+||+++++.+..    ..
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~~~~~~~~----~~   71 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEV------NHPFIVKLHYAFQT----EG   71 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhC------CCCCcccEEEEEEc----CC
Confidence            57999999999999763   5689999998876432   234567799999988      78999999998875    36


Q ss_pred             eEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          116 HLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       116 ~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      ..|+||||+ +++|.+.+...  ..+++..+..++.||+.||+|||+. ||+||||||+||++                 
T Consensus        72 ~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~Nil~-----------------  131 (318)
T cd05582          72 KLYLILDFLRGGDLFTRLSKE--VMFTEEDVKFYLAELALALDHLHSL-GIIYRDLKPENILL-----------------  131 (318)
T ss_pred             EEEEEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CEecCCCCHHHeEE-----------------
Confidence            899999999 88998887543  3489999999999999999999996 99999999999999                 


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---cc
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FA  271 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~~  271 (447)
                                                                             +....++|+|||++......   ..
T Consensus       132 -------------------------------------------------------~~~~~~kL~Dfg~~~~~~~~~~~~~  156 (318)
T cd05582         132 -------------------------------------------------------DEEGHIKLTDFGLSKESIDHEKKAY  156 (318)
T ss_pred             -------------------------------------------------------CCCCcEEEeeccCCcccCCCCCcee
Confidence                                                                   33567999999998654322   23


Q ss_pred             cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccc
Q 013220          272 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  351 (447)
Q Consensus       272 ~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  351 (447)
                      ...|++.|+|||.+.+..++.++|||||||++|+|++|+.||...+      .......+                    
T Consensus       157 ~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~------~~~~~~~i--------------------  210 (318)
T cd05582         157 SFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKD------RKETMTMI--------------------  210 (318)
T ss_pred             cccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCCC------HHHHHHHH--------------------
Confidence            3578999999999998888999999999999999999999996542      11111111                    


Q ss_pred             hhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCC-----hHHHhcCcccccc
Q 013220          352 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLR  418 (447)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpt-----a~elL~hp~f~~~  418 (447)
                                            ......++...+..+.+||.+||+.||++|||     +.+++.||||...
T Consensus       211 ----------------------~~~~~~~p~~~~~~~~~li~~~l~~~P~~R~~a~~~~~~~~~~~~~~~~~  260 (318)
T cd05582         211 ----------------------LKAKLGMPQFLSPEAQSLLRALFKRNPANRLGAGPDGVEEIKRHPFFSTI  260 (318)
T ss_pred             ----------------------HcCCCCCCCCCCHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhCCCCcCCC
Confidence                                  11112234455678899999999999999999     6779999999864

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=2.1e-38  Score=307.53  Aligned_cols=249  Identities=27%  Similarity=0.394  Sum_probs=195.0

Q ss_pred             ecccCceEEEEEEeCCCCeEEEEEEechhHH----hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEE
Q 013220           44 LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ----FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCM  119 (447)
Q Consensus        44 lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~----~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~l  119 (447)
                      ||+|+||+||++++..+++.||+|.+.....    .......|+++++.+      +|+||+++++.+..    +.+.++
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l------~hp~i~~~~~~~~~----~~~~~l   70 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKV------NSPFIVNLAYAFES----KTHLCL   70 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhc------CCCcEEEEEEEEec----CCeEEE
Confidence            6999999999999999999999998764322    123455699999998      78999999998874    468999


Q ss_pred             EEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCC
Q 013220          120 VLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER  198 (447)
Q Consensus       120 vmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~  198 (447)
                      ||||+ +++|.+.+.......+++..+..++.|++.||+|||+. ||+||||||+||++                     
T Consensus        71 v~e~~~g~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~ivH~dikp~Nili---------------------  128 (277)
T cd05607          71 VMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHSM-DIVYRDMKPENVLL---------------------  128 (277)
T ss_pred             EEecCCCCCHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC-CEEEccCChHhEEE---------------------
Confidence            99999 88998877654445688889999999999999999996 99999999999999                     


Q ss_pred             CCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--cccCCCC
Q 013220          199 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FAEEIQT  276 (447)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--~~~~~gt  276 (447)
                                                                         +....++|+|||++......  .....|+
T Consensus       129 ---------------------------------------------------~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~  157 (277)
T cd05607         129 ---------------------------------------------------DDQGNCRLSDLGLAVELKDGKTITQRAGT  157 (277)
T ss_pred             ---------------------------------------------------cCCCCEEEeeceeeeecCCCceeeccCCC
Confidence                                                               33567999999998654432  2334688


Q ss_pred             CCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhccc
Q 013220          277 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH  356 (447)
Q Consensus       277 ~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  356 (447)
                      ..|+|||++.+..++.++|+|||||++|+|++|..||......     ...........                     
T Consensus       158 ~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~-----~~~~~~~~~~~---------------------  211 (277)
T cd05607         158 NGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEK-----VAKEELKRRTL---------------------  211 (277)
T ss_pred             CCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcch-----hhHHHHHHHhh---------------------
Confidence            9999999999888999999999999999999999999654211     00001100000                     


Q ss_pred             chhhhhhhcccCchhHHhhhhcC-CChhhHHHHHHHHhhccccCCCCCCCh----HHHhcCccccccc
Q 013220          357 GDLKRIRRLKFWSLDRLLVDKYR-FSETDAREFAEFLVPLLDFTPEKRPTA----QQCLQHPWLSLRN  419 (447)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~ll~~~L~~dP~kRpta----~elL~hp~f~~~~  419 (447)
                                        ..... .....+.++.+||.+||+.||++||++    ++++.||||+..+
T Consensus       212 ------------------~~~~~~~~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~~~~h~~f~~~~  261 (277)
T cd05607         212 ------------------EDEVKFEHQNFTEESKDICRLFLAKKPEDRLGSREKNDDPRKHEFFKTIN  261 (277)
T ss_pred             ------------------ccccccccccCCHHHHHHHHHHhccCHhhCCCCccchhhhhcChhhcCCC
Confidence                              00000 012346678999999999999999999    6788999998754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=100.00  E-value=4.3e-38  Score=308.77  Aligned_cols=289  Identities=26%  Similarity=0.416  Sum_probs=213.9

Q ss_pred             cCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecc
Q 013220           29 VGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLID  105 (447)
Q Consensus        29 ~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~  105 (447)
                      .++.+  ++|++.++||+|+||.||+|.+..++..||+|.+....   .....+.+|+++++.+      .|++|+++++
T Consensus         7 ~~~~~--~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~   78 (310)
T cd07865           7 FCDEV--SKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLL------KHENVVNLIE   78 (310)
T ss_pred             ccchh--hheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhC------CCCCccceEE
Confidence            45555  57999999999999999999999999999999775432   1223456799999999      7889999998


Q ss_pred             cccccCC----CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecC
Q 013220          106 HFKHAGP----NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTI  181 (447)
Q Consensus       106 ~~~~~~~----~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~  181 (447)
                      ++.....    .....++||||+++++.+.+.... ..+++..+..++.|++.||+|||++ |++|+||||+||++    
T Consensus        79 ~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~-~i~H~dl~p~nil~----  152 (310)
T cd07865          79 ICRTKATPYNRYKGSFYLVFEFCEHDLAGLLSNKN-VKFTLSEIKKVMKMLLNGLYYIHRN-KILHRDMKAANILI----  152 (310)
T ss_pred             EEecccccccCCCceEEEEEcCCCcCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCCHHHEEE----
Confidence            8765421    234689999999888887775432 3589999999999999999999996 99999999999999    


Q ss_pred             CCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecC
Q 013220          182 DPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFG  261 (447)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg  261 (447)
                                                                                          +....++|+|||
T Consensus       153 --------------------------------------------------------------------~~~~~~kl~dfg  164 (310)
T cd07865         153 --------------------------------------------------------------------TKDGILKLADFG  164 (310)
T ss_pred             --------------------------------------------------------------------CCCCcEEECcCC
Confidence                                                                                335679999999


Q ss_pred             ccccccccc-------ccCCCCCCccChHHhhcCC-CCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHH
Q 013220          262 NACRANKQF-------AEEIQTRQYRAPEVILRAG-YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMME  333 (447)
Q Consensus       262 ~a~~~~~~~-------~~~~gt~~y~aPE~l~~~~-~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~  333 (447)
                      .+.......       ....++..|+|||.+.+.. ++.++|+|||||++|+|++|..||...      +.......+.+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~------~~~~~~~~~~~  238 (310)
T cd07865         165 LARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGN------TEQHQLTLISQ  238 (310)
T ss_pred             CcccccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHH
Confidence            986543221       2335678899999987654 688999999999999999999999765      34556667777


Q ss_pred             HhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCc
Q 013220          334 LIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP  413 (447)
Q Consensus       334 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp  413 (447)
                      +.|..+..+....... +.++.....        ........... .+...+..+.+||.+||+.||++|||++++|+||
T Consensus       239 ~~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~l-~~~~~~~~~~dli~~~l~~~P~~R~t~~e~l~h~  308 (310)
T cd07865         239 LCGSITPEVWPGVDKL-ELFKKMELP--------QGQKRKVKERL-KPYVKDPHALDLIDKLLVLDPAKRIDADTALNHD  308 (310)
T ss_pred             HhCCCChhhcccccch-hhhhhccCC--------CccchhhHHhc-ccccCCHHHHHHHHHHhcCChhhccCHHHHhcCC
Confidence            7888776653222111 111110000        00000000000 0111245678999999999999999999999999


Q ss_pred             cc
Q 013220          414 WL  415 (447)
Q Consensus       414 ~f  415 (447)
                      ||
T Consensus       309 ~f  310 (310)
T cd07865         309 FF  310 (310)
T ss_pred             CC
Confidence            98

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=3e-39  Score=320.80  Aligned_cols=244  Identities=25%  Similarity=0.340  Sum_probs=191.7

Q ss_pred             EeecccCceEEEEEEeCCCCeEEEEEEechhHH----hHHHHHHHHHH-HHHhhcCCCCCcceeeeecccccccCCCcce
Q 013220           42 RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ----FAQAALHEIEV-LSAVADGDPSNEKCVIRLIDHFKHAGPNGQH  116 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~----~~~~~~~E~~~-l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~  116 (447)
                      +.||+|+||+||+|++..+++.||+|++.....    ....+..|..+ ++.+      +|+||+++++.+..    .+.
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~------~hp~iv~~~~~~~~----~~~   70 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNV------KHPFLVGLHYSFQT----TEK   70 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhC------CCCCCccEEEEEec----CCE
Confidence            468999999999999999999999998875432    22344445443 4445      89999999988875    368


Q ss_pred             EEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCC
Q 013220          117 LCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI  195 (447)
Q Consensus       117 ~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~  195 (447)
                      .|+||||+ +++|...+...  ..+++..+..++.||+.||+|||++ ||+||||||+||++                  
T Consensus        71 ~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~lH~~-givH~Dlkp~NIll------------------  129 (325)
T cd05604          71 LYFVLDFVNGGELFFHLQRE--RSFPEPRARFYAAEIASALGYLHSI-NIVYRDLKPENILL------------------  129 (325)
T ss_pred             EEEEEcCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeecCCCHHHeEE------------------
Confidence            99999999 88888776543  4589999999999999999999996 99999999999999                  


Q ss_pred             cCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc---ccccc
Q 013220          196 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAE  272 (447)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~---~~~~~  272 (447)
                                                                            +..+.++|+|||++....   .....
T Consensus       130 ------------------------------------------------------~~~~~~kL~DfG~~~~~~~~~~~~~~  155 (325)
T cd05604         130 ------------------------------------------------------DSQGHVVLTDFGLCKEGIAQSDTTTT  155 (325)
T ss_pred             ------------------------------------------------------CCCCCEEEeecCCcccCCCCCCCccc
Confidence                                                                  445679999999986432   22234


Q ss_pred             CCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccch
Q 013220          273 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  352 (447)
Q Consensus       273 ~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  352 (447)
                      .+|++.|+|||++.+..++.++|||||||++|+|++|..||...+      .......+                     
T Consensus       156 ~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~------~~~~~~~~---------------------  208 (325)
T cd05604         156 FCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRD------VAEMYDNI---------------------  208 (325)
T ss_pred             ccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCCC------HHHHHHHH---------------------
Confidence            578999999999999889999999999999999999999997542      11111111                     


Q ss_pred             hcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCCh----HHHhcCcccccc
Q 013220          353 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA----QQCLQHPWLSLR  418 (447)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta----~elL~hp~f~~~  418 (447)
                                           .......+...+..+.++|.+||+.||.+||++    .++++||||...
T Consensus       209 ---------------------~~~~~~~~~~~~~~~~~ll~~ll~~~p~~R~~~~~~~~~i~~h~~f~~~  257 (325)
T cd05604         209 ---------------------LHKPLVLRPGASLTAWSILEELLEKDRQRRLGAKEDFLEIQEHPFFESL  257 (325)
T ss_pred             ---------------------HcCCccCCCCCCHHHHHHHHHHhccCHHhcCCCCCCHHHHhcCCCcCCC
Confidence                                 111111223346678899999999999999987    589999999864

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=100.00  E-value=2e-38  Score=316.06  Aligned_cols=291  Identities=29%  Similarity=0.500  Sum_probs=224.1

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      +++|.+.+.||.|+||.||+|.+..+++.||+|.+....   .....+.+|+.+++.+      +|+||+++++.|....
T Consensus         4 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~~~   77 (334)
T cd07855           4 GSRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHF------KHDNIIAIRDILRPPG   77 (334)
T ss_pred             hhceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhc------CCCCccCHHHhccccC
Confidence            378999999999999999999999999999999876542   2345677899999999      7899999999887665


Q ss_pred             CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          112 PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       112 ~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                      .....+++||||++++|.+++...  ..+++..+..++.|++.||+|||++ ||+||||||+||++              
T Consensus        78 ~~~~~~~lv~e~~~~~l~~~~~~~--~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~dlkp~Nil~--------------  140 (334)
T cd07855          78 ADFKDVYVVMDLMESDLHHIIHSD--QPLTEEHIRYFLYQLLRGLKYIHSA-NVIHRDLKPSNLLV--------------  140 (334)
T ss_pred             CCCceEEEEEehhhhhHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEE--------------
Confidence            556789999999977888887543  3489999999999999999999996 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                +..+.++|+|||.+......  
T Consensus       141 ----------------------------------------------------------~~~~~~kl~dfg~~~~~~~~~~  162 (334)
T cd07855         141 ----------------------------------------------------------NEDCELRIGDFGMARGLSSSPT  162 (334)
T ss_pred             ----------------------------------------------------------cCCCcEEecccccceeecccCc
Confidence                                                                      34677999999998654321  


Q ss_pred             -----cccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhh
Q 013220          270 -----FAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  343 (447)
Q Consensus       270 -----~~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  343 (447)
                           ....+++..|+|||.+.+ ..++.++|+|||||++|+|++|+.||...+      ....+..+....|..+..+.
T Consensus       163 ~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~------~~~~~~~~~~~~g~~~~~~~  236 (334)
T cd07855         163 EHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKN------YVHQLKLILSVLGSPSEEVL  236 (334)
T ss_pred             CCCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCC------hHHHHHHHHHHhCCChhHhh
Confidence                 123468899999999876 457899999999999999999999997653      45567777778888776653


Q ss_pred             hCCCCc--cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          344 IGGAQS--KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       344 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                      ......  ..+++..+      ......+..       .....+..+.+||.+||+.+|++|||+++++.||||......
T Consensus       237 ~~~~~~~~~~~~~~~~------~~~~~~~~~-------~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~~~~~~~~~~  303 (334)
T cd07855         237 NRIGSDRVRKYIQNLP------RKQPVPWSK-------IFPKASPEALDLLSQMLQFDPEERITVEQALQHPFLAQYHDP  303 (334)
T ss_pred             hhhchhhHHHHHhhcc------cCCCCCHHH-------HcccCCHHHHHHHHHHccCChhhCcCHHHHHhChhhhhccCC
Confidence            221110  00000000      000000000       112346789999999999999999999999999999977655


Q ss_pred             cccc
Q 013220          422 RDET  425 (447)
Q Consensus       422 ~~~~  425 (447)
                      ....
T Consensus       304 ~~~~  307 (334)
T cd07855         304 DDEP  307 (334)
T ss_pred             cccc
Confidence            5433

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=5.1e-39  Score=319.17  Aligned_cols=244  Identities=25%  Similarity=0.347  Sum_probs=191.7

Q ss_pred             EeecccCceEEEEEEeCCCCeEEEEEEechhHH----hHHHHHHHHH-HHHHhhcCCCCCcceeeeecccccccCCCcce
Q 013220           42 RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ----FAQAALHEIE-VLSAVADGDPSNEKCVIRLIDHFKHAGPNGQH  116 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~----~~~~~~~E~~-~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~  116 (447)
                      +.||+|+||+||+|++..+++.||+|++.....    ....+..|.. +++.+      .|+||+++++.+..    .+.
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~------~h~~Iv~~~~~~~~----~~~   70 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNV------KHPFLVGLHFSFQT----ADK   70 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhC------CCCCCCceeEEEEc----CCe
Confidence            468999999999999999999999998875432    1223333433 34455      88999999998874    368


Q ss_pred             EEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCC
Q 013220          117 LCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI  195 (447)
Q Consensus       117 ~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~  195 (447)
                      .|+||||+ +++|...+...  ..+.+..++.++.||+.||+|||++ ||+||||||+||++                  
T Consensus        71 ~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~L~~lH~~-giiHrDlkp~Nili------------------  129 (325)
T cd05602          71 LYFVLDYINGGELFYHLQRE--RCFLEPRARFYAAEIASALGYLHSL-NIVYRDLKPENILL------------------  129 (325)
T ss_pred             EEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEecCCCHHHeEE------------------
Confidence            99999999 88898887653  3488899999999999999999996 99999999999999                  


Q ss_pred             cCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc---ccccc
Q 013220          196 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAE  272 (447)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~---~~~~~  272 (447)
                                                                            +.++.++|+|||++....   .....
T Consensus       130 ------------------------------------------------------~~~~~~kl~DfG~a~~~~~~~~~~~~  155 (325)
T cd05602         130 ------------------------------------------------------DSQGHIVLTDFGLCKENIEHNGTTST  155 (325)
T ss_pred             ------------------------------------------------------CCCCCEEEccCCCCcccccCCCCccc
Confidence                                                                  345679999999986432   22234


Q ss_pred             CCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccch
Q 013220          273 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  352 (447)
Q Consensus       273 ~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  352 (447)
                      .+||+.|+|||++.+..++.++|||||||++|+|++|..||...+      .......+                     
T Consensus       156 ~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~------~~~~~~~i---------------------  208 (325)
T cd05602         156 FCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRN------TAEMYDNI---------------------  208 (325)
T ss_pred             ccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCC------HHHHHHHH---------------------
Confidence            578999999999999889999999999999999999999997542      11111111                     


Q ss_pred             hcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChH----HHhcCcccccc
Q 013220          353 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQ----QCLQHPWLSLR  418 (447)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~----elL~hp~f~~~  418 (447)
                                           .......+...+..+.++|.+||+.||.+|+++.    ++++|+||...
T Consensus       209 ---------------------~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~i~~~~~~~~~  257 (325)
T cd05602         209 ---------------------LNKPLQLKPNITNSARHLLEGLLQKDRTKRLGAKDDFMEIKNHIFFSPI  257 (325)
T ss_pred             ---------------------HhCCcCCCCCCCHHHHHHHHHHcccCHHHCCCCCCCHHHHhcCcccCCC
Confidence                                 1111123344567899999999999999999876    89999999754

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=2e-39  Score=282.24  Aligned_cols=280  Identities=30%  Similarity=0.436  Sum_probs=225.8

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH---hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ---FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~---~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      .+|.-.++||+|+||+||+|++..+++.||+|....+..   -.....+|+-+++.+      .|.|||+++++....  
T Consensus         2 ~~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkel------khknivrl~dvlhsd--   73 (292)
T KOG0662|consen    2 QKYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKEL------KHKNIVRLHDVLHSD--   73 (292)
T ss_pred             cchHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHh------hhcceeehhhhhccC--
Confidence            357778999999999999999999999999997665432   245788999999999      788999999998753  


Q ss_pred             CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          113 NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       113 ~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                        ..+.+|+|||..+|..++.+.. ..++.+.++.++.|++.||.|+|++ ++.|||+||+|.++               
T Consensus        74 --kkltlvfe~cdqdlkkyfdsln-g~~d~~~~rsfmlqllrgl~fchsh-nvlhrdlkpqnlli---------------  134 (292)
T KOG0662|consen   74 --KKLTLVFEFCDQDLKKYFDSLN-GDLDPEIVRSFMLQLLRGLGFCHSH-NVLHRDLKPQNLLI---------------  134 (292)
T ss_pred             --ceeEEeHHHhhHHHHHHHHhcC-CcCCHHHHHHHHHHHHhhhhhhhhh-hhhhccCCcceEEe---------------
Confidence              6899999999999999887654 4689999999999999999999997 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccccc
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAE  272 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~~  272 (447)
                                                                               ..++.+||+|||++.-.+-+...
T Consensus       135 ---------------------------------------------------------n~ngelkladfglarafgipvrc  157 (292)
T KOG0662|consen  135 ---------------------------------------------------------NRNGELKLADFGLARAFGIPVRC  157 (292)
T ss_pred             ---------------------------------------------------------ccCCcEEecccchhhhcCCceEe
Confidence                                                                     55788999999999776655433


Q ss_pred             ---CCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHh-hCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          273 ---EIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELA-TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       273 ---~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~-~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                         .+-|.+|++|.++++. .|++..|+||.||++.++. +|+..|++.+      -.+++..++.++|.+.++-+....
T Consensus       158 ysaevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplfpg~d------vddqlkrif~~lg~p~ed~wps~t  231 (292)
T KOG0662|consen  158 YSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGND------VDDQLKRIFRLLGTPTEDQWPSMT  231 (292)
T ss_pred             eeceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCc------HHHHHHHHHHHhCCCccccCCccc
Confidence               3679999999999986 5899999999999999997 5888888774      678899999999998876543333


Q ss_pred             Cccchhcccchhhhhhhc-ccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          348 QSKDYFDRHGDLKRIRRL-KFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                      +..+|       ..++-. ...++.++       -+.....-+|++.++|.-+|..|++|+.+|+||||.+..
T Consensus       232 ~lpdy-------k~yp~ypattswsqi-------vp~lns~grdllqkll~cnp~qrisaeaalqhpyf~d~s  290 (292)
T KOG0662|consen  232 KLPDY-------KPYPIYPATTSWSQI-------VPKLNSTGRDLLQKLLKCNPAQRISAEAALQHPYFSDFS  290 (292)
T ss_pred             cCCCC-------cccCCccccchHHHH-------hhhhcchhHHHHHHHhccCcccccCHHHHhcCccccccC
Confidence            33222       111100 00112221       123344677999999999999999999999999999754

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=100.00  E-value=2.2e-38  Score=309.16  Aligned_cols=251  Identities=28%  Similarity=0.436  Sum_probs=208.3

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|++.+.||+|+||.||+|.+..+++.||+|++....    .....+.+|+++++.+      +|+||+++++.+..  
T Consensus         1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~--   72 (290)
T cd05580           1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSI------RHPFLVNLYGSFQD--   72 (290)
T ss_pred             CceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhC------CCCCccceeeEEEc--
Confidence            36999999999999999999999999999999886542    2345688899999999      78999999998874  


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                        +...++||||+ +++|.+.+...  ..+++..+..++.|++.||+|||+. ||+|+||+|+||++             
T Consensus        73 --~~~~~~v~e~~~~~~L~~~~~~~--~~l~~~~~~~~~~qil~~l~~lH~~-~i~H~dl~p~nili-------------  134 (290)
T cd05580          73 --DSNLYLVMEYVPGGELFSHLRKS--GRFPEPVARFYAAQVVLALEYLHSL-DIVYRDLKPENLLL-------------  134 (290)
T ss_pred             --CCeEEEEEecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CEecCCCCHHHEEE-------------
Confidence              46899999999 89999888654  4589999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF  270 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~  270 (447)
                                                                                 +..+.++|+|||++.......
T Consensus       135 -----------------------------------------------------------~~~~~~kl~dfg~~~~~~~~~  155 (290)
T cd05580         135 -----------------------------------------------------------DSDGYIKITDFGFAKRVKGRT  155 (290)
T ss_pred             -----------------------------------------------------------CCCCCEEEeeCCCccccCCCC
Confidence                                                                       335679999999998766555


Q ss_pred             ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          271 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      ....+++.|+|||.+.+..++.++|+||||+++|+|++|..||...+      .......+                   
T Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~------~~~~~~~~-------------------  210 (290)
T cd05580         156 YTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDN------PIQIYEKI-------------------  210 (290)
T ss_pred             CCCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHH-------------------
Confidence            55678999999999988888899999999999999999999996542      11111111                   


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC-----ChHHHhcCccccccc
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRN  419 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp-----ta~elL~hp~f~~~~  419 (447)
                                             ......++...+..+.++|.+||+.||.+|+     +++|+++||||....
T Consensus       211 -----------------------~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~~  261 (290)
T cd05580         211 -----------------------LEGKVRFPSFFSPDAKDLIRNLLQVDLTKRLGNLKNGVNDIKNHPWFAGID  261 (290)
T ss_pred             -----------------------hcCCccCCccCCHHHHHHHHHHccCCHHHccCcccCCHHHHHcCcccccCC
Confidence                                   1111223444567889999999999999999     999999999998765

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=2.6e-38  Score=306.89  Aligned_cols=258  Identities=24%  Similarity=0.381  Sum_probs=200.9

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      +|++.+.||+|+||.||+|.+..++..||+|++..+  ......+.+|+++++.+      +|+||+++++.+...    
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~~----   71 (279)
T cd06619           2 DIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKC------DSPYIIGFYGAFFVE----   71 (279)
T ss_pred             cchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhC------CCCCeeeEEEEEEEC----
Confidence            688999999999999999999999999999987643  23345788899999998      789999999998854    


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ...++||||+ ++++...      ..+++..+..++.|++.||+|||+. ||+|+||||+||++                
T Consensus        72 ~~~~lv~e~~~~~~l~~~------~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~Nill----------------  128 (279)
T cd06619          72 NRISICTEFMDGGSLDVY------RKIPEHVLGRIAVAVVKGLTYLWSL-KILHRDVKPSNMLV----------------  128 (279)
T ss_pred             CEEEEEEecCCCCChHHh------hcCCHHHHHHHHHHHHHHHHHHHHC-CEeeCCCCHHHEEE----------------
Confidence            6789999999 6666432      2378888999999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-ccc
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-FAE  272 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-~~~  272 (447)
                                                                              +....++|+|||++...... ...
T Consensus       129 --------------------------------------------------------~~~~~~~l~dfg~~~~~~~~~~~~  152 (279)
T cd06619         129 --------------------------------------------------------NTRGQVKLCDFGVSTQLVNSIAKT  152 (279)
T ss_pred             --------------------------------------------------------CCCCCEEEeeCCcceecccccccC
Confidence                                                                    33567999999999754433 344


Q ss_pred             CCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccch
Q 013220          273 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  352 (447)
Q Consensus       273 ~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  352 (447)
                      .+++..|+|||.+.+..++.++|+|||||++|+|++|..||...........  ............+.            
T Consensus       153 ~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~--~~~~~~~~~~~~~~------------  218 (279)
T cd06619         153 YVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLM--PLQLLQCIVDEDPP------------  218 (279)
T ss_pred             CCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhcccccccc--hHHHHHHHhccCCC------------
Confidence            5789999999999988899999999999999999999999965421110000  00000000000000            


Q ss_pred             hcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCCc
Q 013220          353 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR  422 (447)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~~  422 (447)
                                               .......+.++.+||.+||+.||++||+++++++||||+..+...
T Consensus       219 -------------------------~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~eil~~~~~~~~~~~~  263 (279)
T cd06619         219 -------------------------VLPVGQFSEKFVHFITQCMRKQPKERPAPENLMDHPFIVQYNDGN  263 (279)
T ss_pred             -------------------------CCCCCcCCHHHHHHHHHHhhCChhhCCCHHHHhcCcccccccCcc
Confidence                                     000122356789999999999999999999999999998765443

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=100.00  E-value=2.3e-38  Score=311.75  Aligned_cols=285  Identities=26%  Similarity=0.394  Sum_probs=213.8

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH---hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ---FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~---~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      .++|++.+.||.|+||.||+|.+..++..||+|.++....   ......+|+++++.+      .|+||+++++++... 
T Consensus         6 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~~-   78 (309)
T cd07845           6 VTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNL------RHPNIVELKEVVVGK-   78 (309)
T ss_pred             ccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhC------CCCCCcceEEEEecC-
Confidence            3689999999999999999999999999999998764422   122456799999999      788999999988653 


Q ss_pred             CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          112 PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       112 ~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                       .....++||||++++|.+++.... ..+++..+..++.|++.||+|||+. |++||||||+||++              
T Consensus        79 -~~~~~~lv~e~~~~~l~~~l~~~~-~~l~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~nil~--------------  141 (309)
T cd07845          79 -HLDSIFLVMEYCEQDLASLLDNMP-TPFSESQVKCLMLQLLRGLQYLHEN-FIIHRDLKVSNLLL--------------  141 (309)
T ss_pred             -CCCeEEEEEecCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEE--------------
Confidence             335789999999878888876533 4589999999999999999999996 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                +....++|+|||.+......  
T Consensus       142 ----------------------------------------------------------~~~~~~kL~dfg~~~~~~~~~~  163 (309)
T cd07845         142 ----------------------------------------------------------TDKGCLKIADFGLARTYGLPAK  163 (309)
T ss_pred             ----------------------------------------------------------CCCCCEEECccceeeecCCccC
Confidence                                                                      33567999999998755432  


Q ss_pred             -cccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          270 -FAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       270 -~~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                       .....++..|+|||.+.+ ..++.++|+|||||++|+|++|..||...      +.......+.+..+..+..+.....
T Consensus       164 ~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  237 (309)
T cd07845         164 PMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGK------SEIEQLDLIIQLLGTPNESIWPGFS  237 (309)
T ss_pred             CCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHhcCCCChhhchhhh
Confidence             222345788999999876 45789999999999999999999999765      3555666666766665544321110


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                      ... ..   ... .........+..       .....+..+.+||.+||++||++|||++|+|+||||+...
T Consensus       238 ~~~-~~---~~~-~~~~~~~~~~~~-------~~~~~~~~~~~li~~ml~~dp~~R~t~~~il~h~~f~~~~  297 (309)
T cd07845         238 DLP-LV---GKF-TLPKQPYNNLKH-------KFPWLSEAGLRLLNFLLMYDPKKRATAEEALESSYFKEKP  297 (309)
T ss_pred             ccc-cc---ccc-cccCCCCCchHH-------hccccCHHHHHHHHHHhcCChhhCcCHHHHhcChhhccCC
Confidence            000 00   000 000000000000       0112366788999999999999999999999999998654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=3e-38  Score=330.82  Aligned_cols=258  Identities=23%  Similarity=0.290  Sum_probs=204.7

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      +++|++.+.||+|+||+||+|++..+++.||||++...   ......+.+|+.++..+      .|++|++++..+....
T Consensus        31 ~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~------~h~~iv~~~~~~~~~~  104 (496)
T PTZ00283         31 AKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNC------DFFSIVKCHEDFAKKD  104 (496)
T ss_pred             CCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcC------CCCcEEEeecceeccc
Confidence            47999999999999999999999999999999987643   23345677888888877      7899999888776432


Q ss_pred             CC----cceEEEEEecc-cccHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCC
Q 013220          112 PN----GQHLCMVLEFL-GDSLLRLIKYSR--YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       112 ~~----~~~~~lvmE~~-~~~L~~~~~~~~--~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~  184 (447)
                      ..    ...+++||||+ +++|.+.+....  ...+++..+..++.|++.||+|||+. ||+||||||+||++       
T Consensus       105 ~~~~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~-~IiHrDLKP~NILl-------  176 (496)
T PTZ00283        105 PRNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSK-HMIHRDIKSANILL-------  176 (496)
T ss_pred             ccCcccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhC-CEecCCCCHHHEEE-------
Confidence            21    12578999999 889998875432  24588999999999999999999996 99999999999999       


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                       +.+..+||+|||++.
T Consensus       177 -----------------------------------------------------------------~~~~~vkL~DFGls~  191 (496)
T PTZ00283        177 -----------------------------------------------------------------CSNGLVKLGDFGFSK  191 (496)
T ss_pred             -----------------------------------------------------------------eCCCCEEEEecccCe
Confidence                                                                             335679999999986


Q ss_pred             ccccc-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCC
Q 013220          265 RANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMP  339 (447)
Q Consensus       265 ~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~  339 (447)
                      .....     ....+||+.|+|||++.+..++.++|||||||++|+|++|..||...+      ....+..+..  +.  
T Consensus       192 ~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~------~~~~~~~~~~--~~--  261 (496)
T PTZ00283        192 MYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGEN------MEEVMHKTLA--GR--  261 (496)
T ss_pred             eccccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC------HHHHHHHHhc--CC--
Confidence            54321     233578999999999999889999999999999999999999996542      1111111100  00  


Q ss_pred             HHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          340 RKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                                                           ...++...++++.+|+.+||+.||.+||++.++|+|||++..
T Consensus       262 -------------------------------------~~~~~~~~~~~l~~li~~~L~~dP~~RPs~~ell~~p~~~~~  303 (496)
T PTZ00283        262 -------------------------------------YDPLPPSISPEMQEIVTALLSSDPKRRPSSSKLLNMPICKLF  303 (496)
T ss_pred             -------------------------------------CCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHhCHHHHHh
Confidence                                                 011334456789999999999999999999999999998764

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=100.00  E-value=1.1e-37  Score=304.11  Aligned_cols=284  Identities=27%  Similarity=0.447  Sum_probs=209.1

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH---hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ---FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~---~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.+.||.|+||.||+|.+..+++.||+|.++....   ....+.+|+++++.+.     +|+||+++++++.....
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~-----~~~~i~~~~~~~~~~~~   75 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLS-----ESIYIVRLLDVEHVEEK   75 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHcc-----CCCCccceeeeEeecCC
Confidence            479999999999999999999999999999998765432   2346788999999985     57899999998875432


Q ss_pred             -CcceEEEEEecccccHHHHHHhhc---cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          113 -NGQHLCMVLEFLGDSLLRLIKYSR---YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       113 -~~~~~~lvmE~~~~~L~~~~~~~~---~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                       .....|+||||+.+++.+.+....   ...+++..+..++.||+.||+|||++ ||+||||+|+||+++.         
T Consensus        76 ~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~-~i~H~dl~~~nil~~~---------  145 (295)
T cd07837          76 NGKPSLYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKH-GVMHRDLKPQNLLVDK---------  145 (295)
T ss_pred             CCCceEEEEeeccCcCHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeecCCChHHEEEec---------
Confidence             223589999999778888775432   23579999999999999999999996 9999999999999932         


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                    ....++|+|||.+.....
T Consensus       146 --------------------------------------------------------------~~~~~kl~dfg~~~~~~~  163 (295)
T cd07837         146 --------------------------------------------------------------QKGLLKIADLGLGRAFSI  163 (295)
T ss_pred             --------------------------------------------------------------CCCeEEEeecccceecCC
Confidence                                                                          145799999999865433


Q ss_pred             cc---ccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhh
Q 013220          269 QF---AEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  344 (447)
Q Consensus       269 ~~---~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (447)
                      ..   ....+++.|+|||.+.+ ..++.++|+|||||++|+|++|..||...      +.......+.+.++..+.....
T Consensus       164 ~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  237 (295)
T cd07837         164 PVKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGD------SELQQLLHIFKLLGTPTEQVWP  237 (295)
T ss_pred             CccccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCC------CHHHHHHHHHHHhCCCChhhCc
Confidence            21   22356888999999876 45789999999999999999999999765      3444455555555544433211


Q ss_pred             CCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccc
Q 013220          345 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  416 (447)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~  416 (447)
                      ......... ..         ..........    .....+..+.+||.+||+.||.+|||++|+|.||||.
T Consensus       238 ~~~~~~~~~-~~---------~~~~~~~~~~----~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~~~~~~  295 (295)
T cd07837         238 GVSKLRDWH-EF---------PQWKPQDLSR----AVPDLSPEGLDLLQKMLRYDPAKRISAKAALTHPYFD  295 (295)
T ss_pred             chhhccchh-hc---------CcccchhHHH----hccccCHHHHHHHHHHccCChhhcCCHHHHhcCCCcC
Confidence            111000000 00         0000000000    1123466889999999999999999999999999985

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=100.00  E-value=4.2e-38  Score=309.90  Aligned_cols=297  Identities=25%  Similarity=0.380  Sum_probs=212.8

Q ss_pred             ceEEEEeecccCceEEEEEEeCC--CCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTR--TSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~--~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      +|.+.++||+|+||.||+|.+..  ++..||+|.+....    .......+|+++++.+      +|+||+++++.+...
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~~   74 (316)
T cd07842           1 KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLREL------KHENVVSLVEVFLEH   74 (316)
T ss_pred             CceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhc------CCCCccceEEEEeCC
Confidence            58999999999999999999988  89999999877632    2345678899999998      789999999998764


Q ss_pred             CCCcceEEEEEecccccHHHHHHhhcc---CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCc
Q 013220          111 GPNGQHLCMVLEFLGDSLLRLIKYSRY---KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       111 ~~~~~~~~lvmE~~~~~L~~~~~~~~~---~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                        ....+++||||+++++.+++.....   ..+++..+..++.|++.||+|||++ +|+||||||+||++....      
T Consensus        75 --~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~i~h~dlkp~Nil~~~~~------  145 (316)
T cd07842          75 --ADKSVYLLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSN-WVLHRDLKPANILVMGEG------  145 (316)
T ss_pred             --CCceEEEEEeCCCcCHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhC-CEeeCCCCHHHEEEcCCC------
Confidence              3468999999998788877654321   2578899999999999999999996 999999999999994310      


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                    +....++|+|||++....
T Consensus       146 --------------------------------------------------------------~~~~~~kl~Dfg~~~~~~  163 (316)
T cd07842         146 --------------------------------------------------------------PERGVVKIGDLGLARLFN  163 (316)
T ss_pred             --------------------------------------------------------------CccceEEECCCccccccC
Confidence                                                                          225779999999987554


Q ss_pred             ccc------ccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCC---CCchHHHHHHHHHhCC
Q 013220          268 KQF------AEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGF---CEDEDHLALMMELIGK  337 (447)
Q Consensus       268 ~~~------~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~---~~~~~~~~~~~~~~g~  337 (447)
                      ...      ....++..|+|||.+.+. .++.++|+|||||++|+|++|..||........   ......+..+...++.
T Consensus       164 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  243 (316)
T cd07842         164 APLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIFEVLGT  243 (316)
T ss_pred             CCcccccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCcccccccchhHHHHHHHHHHHhCC
Confidence            322      223578899999998764 578999999999999999999999986643221   1123345555666665


Q ss_pred             CCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          338 MPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      .+...........++..... ...........+.....    .....+..+.++|.+||+.||++|||+.|++.||||
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~l~~~P~~Rps~~eil~~~~f  316 (316)
T cd07842         244 PTEKDWPDIKKMPEYDTLMK-DFKTKTYPSNSLAKWME----KHKKPDSQGFDLLRKLLEYDPTKRITAEEALEHPYF  316 (316)
T ss_pred             CchhHHHHHhhcccchhhhh-hccCCCCCCccHHHHHH----hccCCCHHHHHHHHHHhcCCcccCcCHHHHhcCCCC
Confidence            55433211111111110000 00000000001111100    001345688999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-39  Score=328.26  Aligned_cols=248  Identities=30%  Similarity=0.461  Sum_probs=206.9

Q ss_pred             eecccCceEEEEEEeCCCCeEEEEEEe-chhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEEE
Q 013220           43 KLGWGQFSIVWLAYDTRTSSYVALKIQ-KSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVL  121 (447)
Q Consensus        43 ~lG~G~~g~Vy~a~~~~~~~~vaiK~~-~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvm  121 (447)
                      .||+|+||+||.|+|..+...+|||-+ ..+.+..+-+..|+.+.+.|      .|.|||+|++++-..    .++-|.|
T Consensus       582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~L------rHkNIVrYLGs~sen----Gf~kIFM  651 (1226)
T KOG4279|consen  582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTL------RHKNIVRYLGSVSEN----GFFKIFM  651 (1226)
T ss_pred             EeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHH------hhHhHHHHhhccCCC----CeEEEEe
Confidence            489999999999999999999999955 45567778899999999999      789999999997643    4889999


Q ss_pred             ecc-cccHHHHHHhhccCCC--CHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCC
Q 013220          122 EFL-GDSLLRLIKYSRYKGL--ELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER  198 (447)
Q Consensus       122 E~~-~~~L~~~~~~~~~~~l--~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~  198 (447)
                      |.+ ||+|.+++...+ .++  ++.+...+.+||++||+|||.+ .|||||||.+|+|+...                  
T Consensus       652 EqVPGGSLSsLLrskW-GPlKDNEstm~fYtkQILeGLkYLHen-~IVHRDIKGDNVLvNTy------------------  711 (1226)
T KOG4279|consen  652 EQVPGGSLSSLLRSKW-GPLKDNESTMNFYTKQILEGLKYLHEN-KIVHRDIKGDNVLVNTY------------------  711 (1226)
T ss_pred             ecCCCCcHHHHHHhcc-CCCccchhHHHHHHHHHHHHhhhhhhc-ceeeccccCCcEEEeec------------------
Confidence            999 999999987644 677  8889999999999999999997 99999999999999542                  


Q ss_pred             CCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc--cccc-cCCC
Q 013220          199 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQFA-EEIQ  275 (447)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~--~~~~-~~~g  275 (447)
                                                                           .+-+|++|||.+++..  .+.+ .+.|
T Consensus       712 -----------------------------------------------------SGvlKISDFGTsKRLAginP~TETFTG  738 (1226)
T KOG4279|consen  712 -----------------------------------------------------SGVLKISDFGTSKRLAGINPCTETFTG  738 (1226)
T ss_pred             -----------------------------------------------------cceEEecccccchhhccCCcccccccc
Confidence                                                                 4669999999998654  3333 4579


Q ss_pred             CCCccChHHhhcC--CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchh
Q 013220          276 TRQYRAPEVILRA--GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  353 (447)
Q Consensus       276 t~~y~aPE~l~~~--~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  353 (447)
                      |..|||||++..+  .|+.++|||||||++.+|.||++||.....      . + +-|+++ |                 
T Consensus       739 TLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~Elgs------p-q-AAMFkV-G-----------------  792 (1226)
T KOG4279|consen  739 TLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGS------P-Q-AAMFKV-G-----------------  792 (1226)
T ss_pred             chhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCC------h-h-Hhhhhh-c-----------------
Confidence            9999999999876  488999999999999999999999975421      0 1 111111 0                 


Q ss_pred             cccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          354 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                                         +...-+++|.+.+.++..||.+|+.+||.+||+|+++|.+||++..
T Consensus       793 -------------------myKvHP~iPeelsaeak~FilrcFepd~~~R~sA~~LL~DpFlq~~  838 (1226)
T KOG4279|consen  793 -------------------MYKVHPPIPEELSAEAKNFILRCFEPDPCDRPSAKDLLQDPFLQHN  838 (1226)
T ss_pred             -------------------ceecCCCCcHHHHHHHHHHHHHHcCCCcccCccHHHhccCcccccC
Confidence                               1112335788999999999999999999999999999999999976

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=7.2e-39  Score=317.42  Aligned_cols=244  Identities=24%  Similarity=0.366  Sum_probs=191.6

Q ss_pred             EeecccCceEEEEEEeCCCCeEEEEEEechhHH----hHHHHHHHHH-HHHHhhcCCCCCcceeeeecccccccCCCcce
Q 013220           42 RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ----FAQAALHEIE-VLSAVADGDPSNEKCVIRLIDHFKHAGPNGQH  116 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~----~~~~~~~E~~-~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~  116 (447)
                      +.||+|+||.||+|++..+++.||+|++.....    ....+..|.. +++.+      .|+||+++++.+..    ...
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~------~h~~iv~~~~~~~~----~~~   70 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNL------KHPFLVGLHYSFQT----AEK   70 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhC------CCCCccceeeEEEc----CCE
Confidence            468999999999999999999999998865432    2233444443 45556      89999999988874    368


Q ss_pred             EEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCC
Q 013220          117 LCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI  195 (447)
Q Consensus       117 ~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~  195 (447)
                      .|+||||+ +++|...+...  ..+++..+..++.||+.||+|||++ ||+||||||+||++                  
T Consensus        71 ~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~L~~lH~~-~ivH~Dlkp~NIll------------------  129 (321)
T cd05603          71 LYFVLDYVNGGELFFHLQRE--RCFLEPRARFYAAEVASAIGYLHSL-NIIYRDLKPENILL------------------  129 (321)
T ss_pred             EEEEEcCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEeccCCHHHeEE------------------
Confidence            99999999 78888777543  4588999999999999999999996 99999999999999                  


Q ss_pred             cCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc---ccccc
Q 013220          196 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAE  272 (447)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~---~~~~~  272 (447)
                                                                            +..+.+||+|||++....   .....
T Consensus       130 ------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~~~~  155 (321)
T cd05603         130 ------------------------------------------------------DSQGHVVLTDFGLCKEGVEPEETTST  155 (321)
T ss_pred             ------------------------------------------------------CCCCCEEEccCCCCccCCCCCCcccc
Confidence                                                                  445679999999986432   22234


Q ss_pred             CCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccch
Q 013220          273 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  352 (447)
Q Consensus       273 ~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  352 (447)
                      .+|++.|+|||++.+..++.++|||||||++|+|++|..||...+      ...    +.+                   
T Consensus       156 ~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~------~~~----~~~-------------------  206 (321)
T cd05603         156 FCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRD------VSQ----MYD-------------------  206 (321)
T ss_pred             ccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCC------HHH----HHH-------------------
Confidence            578999999999998889999999999999999999999997542      111    111                   


Q ss_pred             hcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCCh----HHHhcCcccccc
Q 013220          353 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA----QQCLQHPWLSLR  418 (447)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta----~elL~hp~f~~~  418 (447)
                                         .+......++...+..+.++|.+||+.||.+||++    .++++||||...
T Consensus       207 -------------------~i~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~~~~~~~  257 (321)
T cd05603         207 -------------------NILHKPLQLPGGKTVAACDLLVGLLHKDQRRRLGAKADFLEIKNHVFFSPI  257 (321)
T ss_pred             -------------------HHhcCCCCCCCCCCHHHHHHHHHHccCCHhhcCCCCCCHHHHhCCCCcCCC
Confidence                               11111222344456788999999999999999976    599999999754

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=100.00  E-value=5.8e-38  Score=305.74  Aligned_cols=281  Identities=28%  Similarity=0.477  Sum_probs=209.4

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH--hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ--FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~--~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      ++|++.+.||.|++|.||+|++..+++.||+|.+.....  ....+.+|+++++.+      +|+||+++++++..    
T Consensus         5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~----   74 (291)
T cd07844           5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDL------KHANIVTLHDIIHT----   74 (291)
T ss_pred             cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhC------CCcceeeEEEEEec----
Confidence            679999999999999999999988999999998764322  224567899999999      78999999998874    


Q ss_pred             cceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          114 GQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       114 ~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      .+..++||||++++|.+.+.... ..+++..++.++.|++.||.|||+. ||+|+||||+||++                
T Consensus        75 ~~~~~lv~e~~~~~L~~~~~~~~-~~~~~~~~~~~~~ql~~al~~lH~~-~i~H~dl~p~nil~----------------  136 (291)
T cd07844          75 KKTLTLVFEYLDTDLKQYMDDCG-GGLSMHNVRLFLFQLLRGLAYCHQR-RVLHRDLKPQNLLI----------------  136 (291)
T ss_pred             CCeEEEEEecCCCCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhC-CeecccCCHHHEEE----------------
Confidence            47899999999778888775433 3588999999999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---c
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---F  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~  270 (447)
                                                                              +..+.++|+|||.+......   .
T Consensus       137 --------------------------------------------------------~~~~~~kl~dfg~~~~~~~~~~~~  160 (291)
T cd07844         137 --------------------------------------------------------SERGELKLADFGLARAKSVPSKTY  160 (291)
T ss_pred             --------------------------------------------------------cCCCCEEECccccccccCCCCccc
Confidence                                                                    33567999999998654321   1


Q ss_pred             ccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 AEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      ....++..|+|||.+.+ ..++.++|+||+||++|+|++|..||....     .....+..+.+..+.............
T Consensus       161 ~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (291)
T cd07844         161 SNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGST-----DVEDQLHKIFRVLGTPTEETWPGVSSN  235 (291)
T ss_pred             cccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCc-----cHHHHHHHHHHhcCCCChhhhhhhhhc
Confidence            22346788999999876 457899999999999999999999996553     234555666666666554442222211


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      ..+......        ......+........  ....+.++|.+||+.+|++|||+.++|+||||
T Consensus       236 ~~~~~~~~~--------~~~~~~~~~~~~~~~--~~~~~~~li~~~L~~~p~~Rps~~e~l~~~~f  291 (291)
T cd07844         236 PEFKPYSFP--------FYPPRPLINHAPRLD--RIPHGEELALKFLQYEPKKRISAAEAMKHPYF  291 (291)
T ss_pred             ccccccccc--------ccCChhHHHhCcCCC--CchhHHHHHHHHhccCcccccCHHHHhcCCCC
Confidence            111110000        000000100000111  12578899999999999999999999999998

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.2e-39  Score=320.37  Aligned_cols=246  Identities=25%  Similarity=0.375  Sum_probs=190.3

Q ss_pred             ecccCceEEEEEEeCCCCeEEEEEEechhHH----hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEE
Q 013220           44 LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ----FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCM  119 (447)
Q Consensus        44 lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~----~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~l  119 (447)
                      ||+|+||+||+|++..+++.||+|++.....    .......|..++.....   .+|++|++++..+...    ...|+
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~---~~~p~i~~~~~~~~~~----~~~~l   73 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLL---DESPFIVGLKFSFQTD----SDLYL   73 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhcc---CCCCcCcceEEEEecC----CeEEE
Confidence            6999999999999999999999998865432    12234456666655422   2689999999988753    68999


Q ss_pred             EEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCC
Q 013220          120 VLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER  198 (447)
Q Consensus       120 vmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~  198 (447)
                      ||||+ +++|...+...  ..+++..++.++.||+.||+|||++ ||+||||||+|||+                     
T Consensus        74 v~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~qil~al~~LH~~-~ivHrDlkp~Nili---------------------  129 (330)
T cd05586          74 VTDYMSGGELFWHLQKE--GRFSEDRAKFYIAELVLALEHLHKY-DIVYRDLKPENILL---------------------  129 (330)
T ss_pred             EEcCCCCChHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEeccCCHHHeEE---------------------
Confidence            99999 88888877643  4589999999999999999999996 99999999999999                     


Q ss_pred             CCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc---cccccCCC
Q 013220          199 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEIQ  275 (447)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~---~~~~~~~g  275 (447)
                                                                         +....++|+|||++....   ......+|
T Consensus       130 ---------------------------------------------------~~~~~~kl~Dfg~a~~~~~~~~~~~~~~g  158 (330)
T cd05586         130 ---------------------------------------------------DATGHIALCDFGLSKANLTDNKTTNTFCG  158 (330)
T ss_pred             ---------------------------------------------------CCCCCEEEecCCcCcCCCCCCCCccCccC
Confidence                                                               335679999999986432   22234578


Q ss_pred             CCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhc
Q 013220          276 TRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  354 (447)
Q Consensus       276 t~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  354 (447)
                      |..|+|||++.+. .++.++|||||||++|+|++|..||...+      .......+.                      
T Consensus       159 t~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~~------~~~~~~~i~----------------------  210 (330)
T cd05586         159 TTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAED------TQQMYRNIA----------------------  210 (330)
T ss_pred             CccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCCC------HHHHHHHHH----------------------
Confidence            9999999999765 47899999999999999999999997542      111111110                      


Q ss_pred             ccchhhhhhhcccCchhHHhhhhcCCCh-hhHHHHHHHHhhccccCCCCCC----ChHHHhcCccccccc
Q 013220          355 RHGDLKRIRRLKFWSLDRLLVDKYRFSE-TDAREFAEFLVPLLDFTPEKRP----TAQQCLQHPWLSLRN  419 (447)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~~~L~~dP~kRp----ta~elL~hp~f~~~~  419 (447)
                                          .....++. ..+..+.+||.+||+.||.+||    ++.++++||||....
T Consensus       211 --------------------~~~~~~~~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~ll~h~~~~~~~  260 (330)
T cd05586         211 --------------------FGKVRFPKNVLSDEGRQFVKGLLNRNPQHRLGAHRDAVELKEHPFFADID  260 (330)
T ss_pred             --------------------cCCCCCCCccCCHHHHHHHHHHcCCCHHHCCCCCCCHHHHhcCccccCCC
Confidence                                00011111 2356888999999999999998    799999999998643

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=100.00  E-value=2.8e-38  Score=306.63  Aligned_cols=277  Identities=27%  Similarity=0.481  Sum_probs=209.3

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH---hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ---FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~---~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      +|++.+.||.|++|.||+|++..++..||||.+.....   ....+.+|+++++.+      +|+||+++++++..    
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~----   70 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKEL------NHPNIVKLLDVIHT----   70 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhc------CCCCCcchhhhccc----
Confidence            48999999999999999999998999999998764422   234678899999999      78999999999874    


Q ss_pred             cceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          114 GQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       114 ~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      +...++||||+.++|.+.+.......+++..+..++.|++.||+|||+. |++|+||+|+||++                
T Consensus        71 ~~~~~~v~e~~~~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~-~i~H~~l~p~nill----------------  133 (284)
T cd07860          71 ENKLYLVFEFLHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSH-RVLHRDLKPQNLLI----------------  133 (284)
T ss_pred             CCcEEEEeeccccCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEE----------------
Confidence            4689999999977888877655445689999999999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---c
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---F  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~  270 (447)
                                                                              +....++|+|||.+......   .
T Consensus       134 --------------------------------------------------------~~~~~~~l~dfg~~~~~~~~~~~~  157 (284)
T cd07860         134 --------------------------------------------------------NTEGAIKLADFGLARAFGVPVRTY  157 (284)
T ss_pred             --------------------------------------------------------CCCCCEEEeeccchhhcccCcccc
Confidence                                                                    34567999999998654332   2


Q ss_pred             ccCCCCCCccChHHhhcCC-CCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 AEEIQTRQYRAPEVILRAG-YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~-~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      ....++..|+|||.+.+.. ++.++|+|||||++|+|++|..||...      +.......+.+..+..+..+.......
T Consensus       158 ~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (284)
T cd07860         158 THEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGD------SEIDQLFRIFRTLGTPDEVVWPGVTSL  231 (284)
T ss_pred             ccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCC------CHHHHHHHHHHHhCCCChhhhhhhhHH
Confidence            2335688999999887654 588999999999999999999999765      344555556666665554332111100


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      ..+....      ..........       ....++..+.++|.+||+.||++|||++++|+||||
T Consensus       232 ~~~~~~~------~~~~~~~~~~-------~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~~~f  284 (284)
T cd07860         232 PDYKPSF------PKWARQDFSK-------VVPPLDEDGRDLLSQMLHYDPNKRISAKAALAHPFF  284 (284)
T ss_pred             HHHHhhc------ccccccCHHH-------HcccCCHHHHHHHHHhcCCCcccCCCHHHHhcCCCC
Confidence            0000000      0000000011       112345678899999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=3.5e-38  Score=314.50  Aligned_cols=250  Identities=24%  Similarity=0.355  Sum_probs=192.6

Q ss_pred             CCceEEEEeecccCceEEEEEEeC-----CCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDT-----RTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~-----~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      .++|++.++||.|+||.||+|.+.     .++..||+|+++..  ......+.+|+++++.+.     +|+||+++++++
T Consensus         6 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~niv~~~~~~   80 (338)
T cd05102           6 RDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIG-----NHLNVVNLLGAC   80 (338)
T ss_pred             hhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhc-----cCcceeeEEeEe
Confidence            478999999999999999999742     34578999987643  233457889999999985     789999999987


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhc--------------------------------------------------
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSR--------------------------------------------------  136 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~--------------------------------------------------  136 (447)
                      ...   +..++++|||+ +++|.+++....                                                  
T Consensus        81 ~~~---~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (338)
T cd05102          81 TKP---NGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGST  157 (338)
T ss_pred             cCC---CCceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCccc
Confidence            643   35789999999 889988875421                                                  


Q ss_pred             ----------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCC
Q 013220          137 ----------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGG  206 (447)
Q Consensus       137 ----------~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (447)
                                ...+++..+..++.|++.||+|||++ ||+||||||+||++                             
T Consensus       158 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~-~ivHrDiKp~Nil~-----------------------------  207 (338)
T cd05102         158 NPPQETDDLWKSPLTMEDLICYSFQVARGMEFLASR-KCIHRDLAARNILL-----------------------------  207 (338)
T ss_pred             ccchhccccccCCCCHHHHHHHHHHHHHHHHHHHHC-CEECCCCccceEEE-----------------------------
Confidence                      12367788899999999999999997 99999999999999                             


Q ss_pred             CCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc-----ccCCCCCCccC
Q 013220          207 STSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF-----AEEIQTRQYRA  281 (447)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~-----~~~~gt~~y~a  281 (447)
                                                                 +....++|+|||++.......     ....++..|+|
T Consensus       208 -------------------------------------------~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~a  244 (338)
T cd05102         208 -------------------------------------------SENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMA  244 (338)
T ss_pred             -------------------------------------------cCCCcEEEeecccccccccCcchhcccCCCCCccccC
Confidence                                                       335679999999986543211     12235678999


Q ss_pred             hHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhh
Q 013220          282 PEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK  360 (447)
Q Consensus       282 PE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  360 (447)
                      ||++.+..++.++|||||||++|+|++ |..||.....     .......+..  +                        
T Consensus       245 PE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~-----~~~~~~~~~~--~------------------------  293 (338)
T cd05102         245 PESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQI-----NEEFCQRLKD--G------------------------  293 (338)
T ss_pred             cHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCc-----cHHHHHHHhc--C------------------------
Confidence            999998889999999999999999997 9999975421     1111100000  0                        


Q ss_pred             hhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          361 RIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                     .....+...++.+.+||.+||+.||++|||+.|+++
T Consensus       294 ---------------~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~el~~  329 (338)
T cd05102         294 ---------------TRMRAPENATPEIYRIMLACWQGDPKERPTFSALVE  329 (338)
T ss_pred             ---------------CCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHH
Confidence                           001123345668999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=100.00  E-value=6.4e-38  Score=312.58  Aligned_cols=286  Identities=28%  Similarity=0.467  Sum_probs=213.3

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC-
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG-  111 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~-  111 (447)
                      +++|++.++||+|+||.||+|++..+++.||+|.+...  ......+.+|+++++.+      .|+||+++++++.... 
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~~~~~~~~~~~   77 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRF------KHENIIGILDIIRPPSF   77 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhC------CCCCcCchhheeecccc
Confidence            37899999999999999999999999999999987532  23445677899999999      7889999998765432 


Q ss_pred             CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          112 PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       112 ~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                      .....++++|||+++++.+.+..   ..+++..+..++.|++.||+|||+. ||+||||||+||++              
T Consensus        78 ~~~~~~~lv~e~~~~~l~~~~~~---~~l~~~~~~~i~~ql~~aL~~LH~~-~ivH~dlkp~Nill--------------  139 (336)
T cd07849          78 ESFNDVYIVQELMETDLYKLIKT---QHLSNDHIQYFLYQILRGLKYIHSA-NVLHRDLKPSNLLL--------------  139 (336)
T ss_pred             cccceEEEEehhcccCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCHHHEEE--------------
Confidence            13357899999998888877743   3489999999999999999999996 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                +..+.++|+|||++......  
T Consensus       140 ----------------------------------------------------------~~~~~~kl~dfg~~~~~~~~~~  161 (336)
T cd07849         140 ----------------------------------------------------------NTNCDLKICDFGLARIADPEHD  161 (336)
T ss_pred             ----------------------------------------------------------CCCCCEEECcccceeecccccc
Confidence                                                                      34567999999998654321  


Q ss_pred             ----cccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhh
Q 013220          270 ----FAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  344 (447)
Q Consensus       270 ----~~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (447)
                          .....++..|+|||.+.+ ..++.++|+|||||++|+|++|+.||...+      .......+...++..+.+...
T Consensus       162 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~------~~~~~~~~~~~~~~~~~~~~~  235 (336)
T cd07849         162 HTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKD------YLHQLNLILGVLGTPSQEDLN  235 (336)
T ss_pred             ccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHcCCCCHHHHH
Confidence                123467899999998765 467899999999999999999999997652      344556666666655433211


Q ss_pred             CCCC--ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          345 GGAQ--SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       345 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                      ....  ...++....      ......+..       .....+..+.+||.+||+.||++|||+.|+++||||......
T Consensus       236 ~~~~~~~~~~~~~~~------~~~~~~~~~-------~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~hp~~~~~~~~  301 (336)
T cd07849         236 CIISLRARNYIKSLP------FKPKVPWNK-------LFPNADPKALDLLDKMLTFNPHKRITVEEALAHPYLEQYHDP  301 (336)
T ss_pred             HhhchhhhhHHhhcC------cCCcccHHH-------HhcccCcHHHHHHHHHcCCChhhCcCHHHHhcCccccccCCC
Confidence            1100  000000000      000000000       012235678999999999999999999999999999976543

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=100.00  E-value=9.2e-38  Score=305.34  Aligned_cols=283  Identities=31%  Similarity=0.485  Sum_probs=214.3

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH------hHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ------FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~------~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      +|++.+.||.|+||.||+|.+..+++.||+|.++....      ....+.+|+++++.+      .|+||+++++++.. 
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~------~h~~i~~~~~~~~~-   73 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQEL------KHPNIIGLLDVFGH-   73 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhc------CCCCChhhhheeec-
Confidence            58999999999999999999998999999998765432      234567899999998      78999999999875 


Q ss_pred             CCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          111 GPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       111 ~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                         .+..++||||++++|.+.+.... ..+++..+..++.||+.||+|||++ ||+|+||+|+||++             
T Consensus        74 ---~~~~~lv~e~~~~~L~~~i~~~~-~~~~~~~~~~~~~qi~~al~~lH~~-~i~H~dl~p~nill-------------  135 (298)
T cd07841          74 ---KSNINLVFEFMETDLEKVIKDKS-IVLTPADIKSYMLMTLRGLEYLHSN-WILHRDLKPNNLLI-------------  135 (298)
T ss_pred             ---CCEEEEEEcccCCCHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHhC-CeeecCCChhhEEE-------------
Confidence               46899999999888988886533 3589999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-  269 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-  269 (447)
                                                                                 +..+.++|+|||++...... 
T Consensus       136 -----------------------------------------------------------~~~~~~~l~dfg~~~~~~~~~  156 (298)
T cd07841         136 -----------------------------------------------------------ASDGVLKLADFGLARSFGSPN  156 (298)
T ss_pred             -----------------------------------------------------------cCCCCEEEccceeeeeccCCC
Confidence                                                                       33567999999999765432 


Q ss_pred             --cccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCC
Q 013220          270 --FAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  346 (447)
Q Consensus       270 --~~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  346 (447)
                        .....++..|+|||.+.+ ..++.++|+|||||++|+|++|..||...      .+......+.+.++..........
T Consensus       157 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  230 (298)
T cd07841         157 RKMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGD------SDIDQLGKIFEALGTPTEENWPGV  230 (298)
T ss_pred             ccccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCC------ccHHHHHHHHHHcCCCchhhhhhc
Confidence              222356788999999865 45789999999999999999997777654      244455555555555444332111


Q ss_pred             CCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCCcc
Q 013220          347 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRD  423 (447)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~~~  423 (447)
                      .....+.....       .......       ......+..+.+||.+||..||++|||++|+|.||||+.....+.
T Consensus       231 ~~~~~~~~~~~-------~~~~~~~-------~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~~~~~~~~~~~~~  293 (298)
T cd07841         231 TSLPDYVEFKP-------FPPTPLK-------QIFPAASDDALDLLQRLLTLNPNKRITARQALEHPYFSNDPAPTP  293 (298)
T ss_pred             ccccccccccc-------cCCcchh-------hhcccccHHHHHHHHHHhcCCcccCcCHHHHhhCccccCCCCCCC
Confidence            11111100000       0000000       012334678999999999999999999999999999998765553

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>PHA03210 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.8e-38  Score=333.12  Aligned_cols=296  Identities=21%  Similarity=0.276  Sum_probs=202.8

Q ss_pred             cccCccccCCceEEEEeecccCceEEEEEEeCCC-CeEEE------------------EEEechhHHhHHHHHHHHHHHH
Q 013220           27 VRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRT-SSYVA------------------LKIQKSAAQFAQAALHEIEVLS   87 (447)
Q Consensus        27 ~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~-~~~va------------------iK~~~~~~~~~~~~~~E~~~l~   87 (447)
                      +..|+.+. ++|++.++||+|+||+||+|..... +..++                  +|..+........+.+|+++++
T Consensus       140 ~~~~~~~~-~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~  218 (501)
T PHA03210        140 LKHDDEFL-AHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALG  218 (501)
T ss_pred             cccchhhh-hccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHH
Confidence            34455554 6899999999999999999865432 11111                  2222222334556789999999


Q ss_pred             HhhcCCCCCcceeeeecccccccCCCcceEEEEEecccccHHHHHHhhc---cCCCCHHHHHHHHHHHHHHHHHHHhhCC
Q 013220           88 AVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSR---YKGLELNKVREICKYILTGLDYLHRELG  164 (447)
Q Consensus        88 ~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~~~~L~~~~~~~~---~~~l~~~~~~~i~~qil~aL~~lH~~~g  164 (447)
                      .+      +|+||+++++++...    +..|+||+++++++..++....   ........++.++.||+.||+|||++ |
T Consensus       219 ~l------~HpnIv~l~~~~~~~----~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~-g  287 (501)
T PHA03210        219 RL------NHENILKIEEILRSE----ANTYMITQKYDFDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDK-K  287 (501)
T ss_pred             hC------CCCCcCcEeEEEEEC----CeeEEEEeccccCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhC-C
Confidence            99      889999999998754    6789999999888887764322   11234567888999999999999996 9


Q ss_pred             cccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCC
Q 013220          165 IIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKP  244 (447)
Q Consensus       165 IiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (447)
                      |+||||||+|||+                                                                   
T Consensus       288 IiHrDLKP~NILl-------------------------------------------------------------------  300 (501)
T PHA03210        288 LIHRDIKLENIFL-------------------------------------------------------------------  300 (501)
T ss_pred             eecCCCCHHHEEE-------------------------------------------------------------------
Confidence            9999999999999                                                                   


Q ss_pred             CccCCCcccceeEeecCccccccccc----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCC
Q 013220          245 ERCLDGIDMRCKVVDFGNACRANKQF----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQG  320 (447)
Q Consensus       245 ~~~~~~~~~~~kL~Dfg~a~~~~~~~----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~  320 (447)
                           +..+.+||+|||++.......    ...+||..|+|||++.+..++.++|||||||++|+|++|.+++.....  
T Consensus       301 -----~~~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~~--  373 (501)
T PHA03210        301 -----NCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCPIGDGG--  373 (501)
T ss_pred             -----CCCCCEEEEeCCCceecCcccccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCccCCC--
Confidence                 335679999999997654321    235789999999999998899999999999999999998765443321  


Q ss_pred             CCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCC
Q 013220          321 FCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTP  400 (447)
Q Consensus       321 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP  400 (447)
                       .....++..+...++....++...   ....|+....... . .........+. ..    ..+..+.++|.+||++||
T Consensus       374 -~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~i~~~~~-~-~~~~~~~~~~~-~~----~~~~~~~~li~kmL~~DP  442 (501)
T PHA03210        374 -GKPGKQLLKIIDSLSVCDEEFPDP---PCKLFDYIDSAEI-D-HAGHSVPPLIR-NL----GLPADFEYPLVKMLTFDW  442 (501)
T ss_pred             -CCHHHHHHHHHHhcccChhhcCCc---HHHHHHHhhhhhc-c-cCccchhhHHH-hc----CCChHHHHHHHHHhccCc
Confidence             123344455555444433332110   0011111100000 0 00001111111 11    134568899999999999


Q ss_pred             CCCCChHHHhcCccccccc
Q 013220          401 EKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       401 ~kRpta~elL~hp~f~~~~  419 (447)
                      .+|||+.|+|+||||....
T Consensus       443 ~~Rpsa~elL~hp~f~~~~  461 (501)
T PHA03210        443 HLRPGAAELLALPLFSAEE  461 (501)
T ss_pred             ccCcCHHHHhhChhhhcCC
Confidence            9999999999999998643

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=100.00  E-value=3.5e-38  Score=313.31  Aligned_cols=289  Identities=21%  Similarity=0.282  Sum_probs=198.9

Q ss_pred             EEEeeccc--CceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           40 AQRKLGWG--QFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        40 l~~~lG~G--~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      +.++||+|  +|++||++.+..+++.||+|.+....   ...+.+.+|+++++.+      +|+||+++++++...    
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l------~hpniv~~~~~~~~~----   71 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLF------NHPNIVPYRATFIAD----   71 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhc------CCCCeeeEEEEEEEC----
Confidence            56789999  67899999999999999999887542   3345778899999998      899999999998754    


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ...++||||+ ++++.+++.......+++..++.++.|++.||+|||++ ||+||||||+||++..              
T Consensus        72 ~~~~lv~e~~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~-~iiH~dlkp~Nil~~~--------------  136 (327)
T cd08227          72 NELWVVTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHM-GYVHRSVKASHILISV--------------  136 (327)
T ss_pred             CEEEEEEeccCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC-CEecCCCChhhEEEec--------------
Confidence            6899999999 78899888654445689999999999999999999996 9999999999999943              


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc-----
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-----  268 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~-----  268 (447)
                                                                                ...++++||+.+.....     
T Consensus       137 ----------------------------------------------------------~~~~~l~~~~~~~~~~~~~~~~  158 (327)
T cd08227         137 ----------------------------------------------------------DGKVYLSGLRSNLSMINHGQRL  158 (327)
T ss_pred             ----------------------------------------------------------CCcEEEcccchhhccccccccc
Confidence                                                                      45677888875432210     


Q ss_pred             -----ccccCCCCCCccChHHhhc--CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          269 -----QFAEEIQTRQYRAPEVILR--AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       269 -----~~~~~~gt~~y~aPE~l~~--~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                           ......++..|+|||++.+  ..++.++|||||||++|+|++|..||.....      ...  ......+..+..
T Consensus       159 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~------~~~--~~~~~~~~~~~~  230 (327)
T cd08227         159 RVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPA------TQM--LLEKLNGTVPCL  230 (327)
T ss_pred             cccccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCcch------hHH--HHHHhcCCcccc
Confidence                 1112346778999999976  3588999999999999999999999975421      111  111112222211


Q ss_pred             hhhCCCCccch------hcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          342 IAIGGAQSKDY------FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       342 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      +........+.      ................................+..+.+||.+||+.||++|||++|+|+||||
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~ell~~p~f  310 (327)
T cd08227         231 LDTTTIPAEELTMKPSRSGANSGLGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFF  310 (327)
T ss_pred             ccccchhhhhcccCCcccCCcCCCCcccccCCcCccccCCcccccccccCHHHHHHHHHHHhhCchhcCCHHHHhcChhh
Confidence            10000000000      000000000000000000000000011233456789999999999999999999999999999


Q ss_pred             cccc
Q 013220          416 SLRN  419 (447)
Q Consensus       416 ~~~~  419 (447)
                      +...
T Consensus       311 ~~~~  314 (327)
T cd08227         311 KQIK  314 (327)
T ss_pred             hhcc
Confidence            8643

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=100.00  E-value=7.1e-38  Score=303.69  Aligned_cols=278  Identities=31%  Similarity=0.535  Sum_probs=210.9

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      +|++.+.||.|+||.||+|.+..++..||+|.+....   .....+.+|+.+++.+      .|+||+++++.+..    
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i~~~~~~~~~----   70 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQAC------QHPYVVKLLDVFPH----   70 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhC------CCCCCcceeeEEec----
Confidence            5899999999999999999999899999999876442   2345788899999999      68999999998875    


Q ss_pred             cceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          114 GQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       114 ~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      +...++||||++++|.+.+.... ..+++..++.++.|++.||+|||+. ||+|+||||+||++                
T Consensus        71 ~~~~~~v~e~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dl~p~ni~~----------------  132 (286)
T cd07832          71 GSGFVLVMEYMPSDLSEVLRDEE-RPLPEAQVKSYMRMLLKGVAYMHAN-GIMHRDLKPANLLI----------------  132 (286)
T ss_pred             CCeeEEEecccCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCcCHHHEEE----------------
Confidence            47899999999999998876433 5689999999999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc----
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----  269 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~----  269 (447)
                                                                              +....++|+|||.+......    
T Consensus       133 --------------------------------------------------------~~~~~~~l~dfg~~~~~~~~~~~~  156 (286)
T cd07832         133 --------------------------------------------------------SADGVLKIADFGLARLFSEEEPRL  156 (286)
T ss_pred             --------------------------------------------------------cCCCcEEEeeeeecccccCCCCCc
Confidence                                                                    33567999999998755432    


Q ss_pred             cccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          270 FAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      .....++..|+|||.+.+. .++.++|||||||++|+|++|..||...      .+......+....+............
T Consensus       157 ~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (286)
T cd07832         157 YSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGE------NDIEQLAIVFRTLGTPNEETWPGLTS  230 (286)
T ss_pred             cccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCC------CHHHHHHHHHHHcCCCChHHHhhccC
Confidence            2344688999999998764 4689999999999999999998888654      34455555666665554322111100


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  416 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~  416 (447)
                      ..       +.   ....+.........  ....+.+..+.+||.+||+.||++|||++++|+||||.
T Consensus       231 ~~-------~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~h~~~~  286 (286)
T cd07832         231 LP-------DY---NKITFPESKPIPLE--EIFPDASPEALDLLKGLLVYDPSKRLSAAEALRHPYFT  286 (286)
T ss_pred             cc-------hh---hcccCCCCCcchHH--HhCCCccHHHHHHHHHHhccChhhCCCHHHHhhCcCcC
Confidence            00       00   00000000000000  01123457899999999999999999999999999994

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=100.00  E-value=8.4e-41  Score=311.01  Aligned_cols=255  Identities=28%  Similarity=0.414  Sum_probs=209.5

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      ..|.+.++||+|+||.||+|.++.+|..+|||....+.. .+++..|+.+++..      ..++||+||+.|...    .
T Consensus        33 EVFDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~sD-LQEIIKEISIMQQC------~S~yVVKYYGSYFK~----s  101 (502)
T KOG0574|consen   33 EVFDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVDTD-LQEIIKEISIMQQC------KSKYVVKYYGSYFKH----S  101 (502)
T ss_pred             HHHHHHHHhcCCcchHHHHHHHhccCcEEEEEecCccch-HHHHHHHHHHHHHc------CCchhhhhhhhhccC----C
Confidence            347888999999999999999999999999997665544 78889999999999      789999999987743    4


Q ss_pred             eEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          116 HLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       116 ~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      .+|+||||| .|++.+++.. +.+++.+.++..+++..+.||+|||. +.=||||||..|||+                 
T Consensus       102 DLWIVMEYCGAGSiSDI~R~-R~K~L~E~EIs~iL~~TLKGL~YLH~-~~KIHRDIKAGNILL-----------------  162 (502)
T KOG0574|consen  102 DLWIVMEYCGAGSISDIMRA-RRKPLSEQEISAVLRDTLKGLQYLHD-LKKIHRDIKAGNILL-----------------  162 (502)
T ss_pred             ceEeehhhcCCCcHHHHHHH-hcCCccHHHHHHHHHHHHhHHHHHHH-HHHHHhhcccccEEE-----------------
Confidence            799999999 6778877755 44789999999999999999999998 588999999999999                 


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---cc
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FA  271 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~~  271 (447)
                                                                             ..++..||+|||.+-...+.   ..
T Consensus       163 -------------------------------------------------------NT~G~AKLADFGVAGQLTDTMAKRN  187 (502)
T KOG0574|consen  163 -------------------------------------------------------NTDGIAKLADFGVAGQLTDTMAKRN  187 (502)
T ss_pred             -------------------------------------------------------cccchhhhhhccccchhhhhHHhhC
Confidence                                                                   44788999999999655433   23


Q ss_pred             cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccc
Q 013220          272 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  351 (447)
Q Consensus       272 ~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  351 (447)
                      ...||++|+|||++..-.|..++||||||++..+|..|+.||.+.-         -+.-++-+-..+|..+         
T Consensus       188 TVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIH---------PMRAIFMIPT~PPPTF---------  249 (502)
T KOG0574|consen  188 TVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIH---------PMRAIFMIPTKPPPTF---------  249 (502)
T ss_pred             ccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCccccc---------ccceeEeccCCCCCCC---------
Confidence            3479999999999999999999999999999999999999996531         1222221111111111         


Q ss_pred             hhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccC
Q 013220          352 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~  420 (447)
                                                 .-|..-+.+|.||+++||..+|++|.||.++++|||++....
T Consensus       250 ---------------------------~KPE~WS~~F~DFi~~CLiK~PE~R~TA~~L~~H~FiknA~g  291 (502)
T KOG0574|consen  250 ---------------------------KKPEEWSSEFNDFIRSCLIKKPEERKTALRLCEHTFIKNAPG  291 (502)
T ss_pred             ---------------------------CChHhhhhHHHHHHHHHhcCCHHHHHHHHHHhhhhhhcCCCc
Confidence                                       123344779999999999999999999999999999987543

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.4e-40  Score=329.23  Aligned_cols=257  Identities=26%  Similarity=0.454  Sum_probs=211.6

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh-HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA-AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      .+-|.++..||.|+||.||+|..+.++...|.|++... ....+++.-|+++|...      .||+||++++.|+..   
T Consensus        31 ~d~WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~C------dHP~ivkLl~ayy~e---  101 (1187)
T KOG0579|consen   31 RDHWEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAEC------DHPVIVKLLSAYYFE---  101 (1187)
T ss_pred             HHHHHHHhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcC------CChHHHHHHHHHhcc---
Confidence            35578999999999999999999999999999987654 34577899999999999      899999999998864   


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                       ..+||+.||| ||....++ -...+++.+.++..+|+|++.||.|||++ +|||||+|..|||++.             
T Consensus       102 -nkLwiliEFC~GGAVDaim-lEL~r~LtE~QIqvvc~q~ldALn~LHs~-~iIHRDLKAGNiL~Tl-------------  165 (1187)
T KOG0579|consen  102 -NKLWILIEFCGGGAVDAIM-LELGRVLTEDQIQVVCYQVLDALNWLHSQ-NIIHRDLKAGNILLTL-------------  165 (1187)
T ss_pred             -CceEEEEeecCCchHhHHH-HHhccccchHHHHHHHHHHHHHHHHHhhc-chhhhhccccceEEEe-------------
Confidence             5799999999 55555544 44457899999999999999999999997 9999999999999954             


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc---cc
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQ  269 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~---~~  269 (447)
                                                                                 ++.++|+|||.+..-.   +.
T Consensus       166 -----------------------------------------------------------dGdirLADFGVSAKn~~t~qk  186 (1187)
T KOG0579|consen  166 -----------------------------------------------------------DGDIRLADFGVSAKNKSTRQK  186 (1187)
T ss_pred             -----------------------------------------------------------cCcEeeecccccccchhHHhh
Confidence                                                                       6779999999885332   33


Q ss_pred             cccCCCCCCccChHHhh-----cCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhh
Q 013220          270 FAEEIQTRQYRAPEVIL-----RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  344 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~-----~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (447)
                      ...+.||++|||||+..     ..+|+.++||||||++|.+|..+.+|-..         ...|..++++-...|+.++ 
T Consensus       187 RDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhe---------lnpMRVllKiaKSePPTLl-  256 (1187)
T KOG0579|consen  187 RDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHE---------LNPMRVLLKIAKSEPPTLL-  256 (1187)
T ss_pred             hccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccc---------cchHHHHHHHhhcCCCccc-
Confidence            45678999999999864     46899999999999999999999998743         3355666665544443321 


Q ss_pred             CCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccC
Q 013220          345 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~  420 (447)
                                                         -|+.-+..|.|||.+||..||..||+++|+|+||||+...+
T Consensus       257 -----------------------------------qPS~Ws~~F~DfLk~cL~Knp~~Rp~aaqll~Hpfv~~~~S  297 (1187)
T KOG0579|consen  257 -----------------------------------QPSHWSRSFSDFLKRCLVKNPRNRPPAAQLLKHPFVQNAPS  297 (1187)
T ss_pred             -----------------------------------CcchhhhHHHHHHHHHHhcCCccCCCHHHHhhCcccccCCc
Confidence                                               22333668999999999999999999999999999996543

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.9e-38  Score=301.72  Aligned_cols=258  Identities=29%  Similarity=0.437  Sum_probs=204.4

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC--
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP--  112 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~--  112 (447)
                      .++|++.+.||.|++|.||+|++..+++.+++|++.......+.+.+|+++++.+.     .|+||+++++.+.....  
T Consensus         5 ~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~~~-----~h~~i~~~~~~~~~~~~~~   79 (275)
T cd06608           5 TGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYS-----NHPNIATFYGAFIKKNPPG   79 (275)
T ss_pred             hhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCchhHHHHHHHHHHHHHhc-----CCCChheEEEEEEecCCCC
Confidence            37999999999999999999999888999999998876655677889999999985     68999999999876542  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSR--YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~--~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                      .+...++||||+ +++|.+++....  ...+++..+..++.|++.||+|||+. |++|+||+|+||++            
T Consensus        80 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~-~i~H~~l~p~ni~~------------  146 (275)
T cd06608          80 NDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHEN-KVIHRDIKGQNILL------------  146 (275)
T ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcC-CcccCCCCHHHEEE------------
Confidence            356799999999 778888775433  34588999999999999999999996 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                  +....++|+|||.+......
T Consensus       147 ------------------------------------------------------------~~~~~~~l~d~~~~~~~~~~  166 (275)
T cd06608         147 ------------------------------------------------------------TKNAEVKLVDFGVSAQLDST  166 (275)
T ss_pred             ------------------------------------------------------------ccCCeEEECCCccceecccc
Confidence                                                                        33567999999988654322


Q ss_pred             ---cccCCCCCCccChHHhhc-----CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          270 ---FAEEIQTRQYRAPEVILR-----AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       270 ---~~~~~gt~~y~aPE~l~~-----~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                         .....++..|+|||.+..     ..++.++|||||||++|+|++|..||....      .   ...+.+.....+..
T Consensus       167 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~------~---~~~~~~~~~~~~~~  237 (275)
T cd06608         167 LGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMH------P---MRALFKIPRNPPPT  237 (275)
T ss_pred             hhhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccccc------h---HHHHHHhhccCCCC
Confidence               223467889999999864     246789999999999999999999996432      1   11111111110000


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                                                          ...+...++.+.+||.+||..||++|||++|+++|||+
T Consensus       238 ------------------------------------~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~~~~~  275 (275)
T cd06608         238 ------------------------------------LKSPENWSKKFNDFISECLIKNYEQRPFMEELLEHPFI  275 (275)
T ss_pred             ------------------------------------CCchhhcCHHHHHHHHHHhhcChhhCcCHHHHhcCCCC
Confidence                                                00112345688999999999999999999999999996

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=100.00  E-value=6.6e-38  Score=303.28  Aligned_cols=277  Identities=30%  Similarity=0.462  Sum_probs=210.0

Q ss_pred             eEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           38 YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        38 y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      |++.++||+|+||.||+|++..++..||+|.++...  .......+|+.+++.+.     +|+||+++++++...  ...
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~-----~h~~i~~~~~~~~~~--~~~   73 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLS-----PHPNILRLIEVLFDR--KTG   73 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcC-----CCCCccceEEEEecC--CCC
Confidence            788999999999999999999999999999876542  12224456888888774     689999999998753  335


Q ss_pred             eEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCC
Q 013220          116 HLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI  195 (447)
Q Consensus       116 ~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~  195 (447)
                      .+++||||+++++.+.+.... ..+++..+..++.|++.||+|||++ ||+||||+|+||++                  
T Consensus        74 ~~~lv~e~~~~~l~~~l~~~~-~~~~~~~~~~~~~qi~~~L~~LH~~-~i~H~dl~p~ni~l------------------  133 (282)
T cd07831          74 RLALVFELMDMNLYELIKGRK-RPLPEKRVKSYMYQLLKSLDHMHRN-GIFHRDIKPENILI------------------  133 (282)
T ss_pred             cEEEEEecCCccHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHC-CceecccCHHHEEE------------------
Confidence            789999999778888775432 4589999999999999999999996 99999999999999                  


Q ss_pred             cCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc--ccccC
Q 013220          196 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEE  273 (447)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~--~~~~~  273 (447)
                                                                            +. ..++|+|||.+.....  .....
T Consensus       134 ------------------------------------------------------~~-~~~kl~dfg~~~~~~~~~~~~~~  158 (282)
T cd07831         134 ------------------------------------------------------KD-DILKLADFGSCRGIYSKPPYTEY  158 (282)
T ss_pred             ------------------------------------------------------cC-CCeEEEecccccccccCCCcCCC
Confidence                                                                  33 6799999999875432  22345


Q ss_pred             CCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccch
Q 013220          274 IQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  352 (447)
Q Consensus       274 ~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  352 (447)
                      .++..|+|||.+.. ..++.++|+|||||++|+|++|..||...      +.......+.+..|..+..+..........
T Consensus       159 ~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (282)
T cd07831         159 ISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGT------NELDQIAKIHDVLGTPDAEVLKKFRKSRHM  232 (282)
T ss_pred             CCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCC------CHHHHHHHHHHHcCCCCHHHHHhhcccccc
Confidence            67899999998754 45689999999999999999999999765      345566777777777777653211111000


Q ss_pred             hcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          353 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                           .. ...........       ......+..+.+||.+||+.||++|||++++++||||
T Consensus       233 -----~~-~~~~~~~~~~~-------~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~~~~~  282 (282)
T cd07831         233 -----NY-NFPSKKGTGLR-------KLLPNASAEGLDLLKKLLAYDPDERITAKQALRHPYF  282 (282)
T ss_pred             -----cc-cCcccccccHH-------HHcccccHHHHHHHHHHhccCcccccCHHHHhhCCCC
Confidence                 00 00000000000       1122457899999999999999999999999999998

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.7e-38  Score=310.35  Aligned_cols=253  Identities=27%  Similarity=0.402  Sum_probs=203.4

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      .+|++.+.||+|++|+||+|.+..+++.||+|.+....    ...+.+..|+++++.+      .|++|+++++.+..  
T Consensus         1 ~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~--   72 (316)
T cd05574           1 KHFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATL------DHPFLPTLYASFQT--   72 (316)
T ss_pred             CceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhC------CCCCchhheeeeec--
Confidence            36999999999999999999999999999999876543    2345688899999999      78899999998874  


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                        +...++||||+ +++|.+++.......+++..+..++.|++.||+|||+. |++|+||||+||++.            
T Consensus        73 --~~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~Nili~------------  137 (316)
T cd05574          73 --ETYLCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLL-GIVYRDLKPENILLH------------  137 (316)
T ss_pred             --CCEEEEEEEecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHC-CeeccCCChHHeEEc------------
Confidence              46899999999 88999988754445689999999999999999999996 999999999999993            


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-  269 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-  269 (447)
                                                                                  .+..++|+|||++...... 
T Consensus       138 ------------------------------------------------------------~~~~~~l~dfg~~~~~~~~~  157 (316)
T cd05574         138 ------------------------------------------------------------ESGHIMLSDFDLSKQSDVEP  157 (316)
T ss_pred             ------------------------------------------------------------CCCCEEEeecchhhcccccc
Confidence                                                                        3567899999987543211 


Q ss_pred             -------------------------------cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCC
Q 013220          270 -------------------------------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSG  318 (447)
Q Consensus       270 -------------------------------~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~  318 (447)
                                                     ....+|+..|+|||++.+..++.++|||||||++|+|++|..||...+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~  237 (316)
T cd05574         158 PPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNR  237 (316)
T ss_pred             cccccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCch
Confidence                                           1123678899999999988899999999999999999999999975531


Q ss_pred             CCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCC--hhhHHHHHHHHhhcc
Q 013220          319 QGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFS--ETDAREFAEFLVPLL  396 (447)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~ll~~~L  396 (447)
                            ...   ..++..                                       ....++  ...+..+.+||.+||
T Consensus       238 ------~~~---~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~li~~~l  269 (316)
T cd05574         238 ------DET---FSNILK---------------------------------------KEVTFPGSPPVSSSARDLIRKLL  269 (316)
T ss_pred             ------HHH---HHHHhc---------------------------------------CCccCCCccccCHHHHHHHHHHc
Confidence                  111   111110                                       000011  124678999999999


Q ss_pred             ccCCCCCCC----hHHHhcCccccccc
Q 013220          397 DFTPEKRPT----AQQCLQHPWLSLRN  419 (447)
Q Consensus       397 ~~dP~kRpt----a~elL~hp~f~~~~  419 (447)
                      +.||++|||    ++|+|+||||+...
T Consensus       270 ~~~p~~R~s~~~~~~~ll~~~~~~~~~  296 (316)
T cd05574         270 VKDPSKRLGSKRGAAEIKQHPFFRGVN  296 (316)
T ss_pred             cCCHhHCCCchhhHHHHHcCchhhcCC
Confidence            999999999    99999999998643

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=100.00  E-value=1.3e-37  Score=297.06  Aligned_cols=250  Identities=27%  Similarity=0.411  Sum_probs=200.6

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      .|++.+.||.|++|.||++.+..+++.||+|.+....   ...+.+.+|+++++.+      .|++|+++++.+...   
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~~---   71 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQL------KHPNIVAYRESWEGE---   71 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhC------CCCCeeeeeeeecCC---
Confidence            4899999999999999999999899999999876432   3345678899999998      788999998877532   


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      ...++++|||+ +++|.+.+.......+++.++..++.|++.||++||++ ||+|+||||+||++.              
T Consensus        72 ~~~~~lv~e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~-~i~H~di~p~nil~~--------------  136 (257)
T cd08223          72 DGLLYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEK-HILHRDLKTQNVFLT--------------  136 (257)
T ss_pred             CCEEEEEecccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCchhEEEe--------------
Confidence            34789999999 78898888665445689999999999999999999996 999999999999993              


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc---c
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---Q  269 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~---~  269 (447)
                                                                                ....++|+|||.+.....   .
T Consensus       137 ----------------------------------------------------------~~~~~~l~df~~~~~~~~~~~~  158 (257)
T cd08223         137 ----------------------------------------------------------RTNIIKVGDLGIARVLENQCDM  158 (257)
T ss_pred             ----------------------------------------------------------cCCcEEEecccceEEecccCCc
Confidence                                                                      356799999999865432   2


Q ss_pred             cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          270 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      .....+++.|+|||.+.+..++.++|+|||||++++|++|..||...+      .......+..  +..           
T Consensus       159 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~------~~~~~~~~~~--~~~-----------  219 (257)
T cd08223         159 ASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKD------MNSLVYRIIE--GKL-----------  219 (257)
T ss_pred             cccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCC------HHHHHHHHHh--cCC-----------
Confidence            233467899999999998889999999999999999999999996442      1111111100  000           


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                                                  +..+...+..+.+||.+||+.||++|||+.++++||||
T Consensus       220 ----------------------------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~~~~  257 (257)
T cd08223         220 ----------------------------PPMPKDYSPELGELIATMLSKRPEKRPSVKSILRQPYI  257 (257)
T ss_pred             ----------------------------CCCccccCHHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence                                        01233456789999999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=100.00  E-value=9e-38  Score=305.01  Aligned_cols=283  Identities=28%  Similarity=0.401  Sum_probs=214.5

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.++||.|++|+||+|.+..+++.||+|.+....   .....+.+|+++++.+      +|+||+++++++..   
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~---   72 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEM------QHGNIVRLQDVVHS---   72 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhc------cCCCEeeEEEEEec---
Confidence            57999999999999999999999899999999775432   2235677899999999      78999999999875   


Q ss_pred             CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          113 NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       113 ~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                       +...++||||+++++.+.+.......+++..+..++.||+.||+|||++ |++|+||+|+||++..             
T Consensus        73 -~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~-~i~H~dl~p~nill~~-------------  137 (294)
T PLN00009         73 -EKRLYLVFEYLDLDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSH-RVLHRDLKPQNLLIDR-------------  137 (294)
T ss_pred             -CCeEEEEEecccccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhC-CeeCCCCCcceEEEEC-------------
Confidence             3689999999987888877654444467888899999999999999997 9999999999999942             


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---  269 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---  269 (447)
                                                                                ....++|+|||++......   
T Consensus       138 ----------------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~  159 (294)
T PLN00009        138 ----------------------------------------------------------RTNALKLADFGLARAFGIPVRT  159 (294)
T ss_pred             ----------------------------------------------------------CCCEEEEcccccccccCCCccc
Confidence                                                                      2346899999998654322   


Q ss_pred             cccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          270 FAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      .....++..|+|||.+.+. .++.++|+|||||++|+|++|..||...+      ....+..+....+.....+......
T Consensus       160 ~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  233 (294)
T PLN00009        160 FTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDS------EIDELFKIFRILGTPNEETWPGVTS  233 (294)
T ss_pred             cccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhCCCChhhcccccc
Confidence            2334678899999998764 57899999999999999999999997653      4455555666666665554332222


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                      ...+.......        . .....    ......+..+.+++.+||+.+|++||++.++++||||++..
T Consensus       234 ~~~~~~~~~~~--------~-~~~~~----~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~~~~~~~~~  291 (294)
T PLN00009        234 LPDYKSAFPKW--------P-PKDLA----TVVPTLEPAGVDLLSKMLRLDPSKRITARAALEHEYFKDLG  291 (294)
T ss_pred             chhhhhhcccC--------C-CCCHH----HhCcCCChHHHHHHHHHccCChhhCcCHHHHhcCchHhHHh
Confidence            22111110000        0 00000    01223466789999999999999999999999999999754

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=100.00  E-value=1e-37  Score=302.84  Aligned_cols=280  Identities=29%  Similarity=0.477  Sum_probs=214.4

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.+.||+|+||.||+|.+..+++.||+|.++...   .....+.+|+++++.+      .|+||+++++.+..   
T Consensus         1 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~---   71 (288)
T cd07833           1 NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQL------RHENIVNLKEAFRR---   71 (288)
T ss_pred             CceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhc------CCCCeeehhheEEE---
Confidence            47999999999999999999999999999999876532   2345788999999999      78999999999875   


Q ss_pred             CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          113 NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       113 ~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                       +...+++|||+++++...+.... ..+++..+..++.|++.||+|||++ |++|+|++|+||++               
T Consensus        72 -~~~~~iv~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~-~i~H~dl~~~ni~~---------------  133 (288)
T cd07833          72 -KGRLYLVFEYVERTLLELLEASP-GGLPPDAVRSYIWQLLQAIAYCHSH-NIIHRDIKPENILV---------------  133 (288)
T ss_pred             -CCEEEEEEecCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHeEE---------------
Confidence             36899999999556555443332 4488999999999999999999997 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---  269 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---  269 (447)
                                                                               +....++|+|||.+......   
T Consensus       134 ---------------------------------------------------------~~~~~~kl~d~g~~~~~~~~~~~  156 (288)
T cd07833         134 ---------------------------------------------------------SESGVLKLCDFGFARALRARPAS  156 (288)
T ss_pred             ---------------------------------------------------------CCCCCEEEEeeecccccCCCccc
Confidence                                                                     34677999999998754432   


Q ss_pred             -cccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          270 -FAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       270 -~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                       .....++..|+|||++.+. .++.++|+||||+++|+|++|..||...      .....+..+....+.++........
T Consensus       157 ~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  230 (288)
T cd07833         157 PLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGD------SDIDQLYLIQKCLGPLPPSHQELFS  230 (288)
T ss_pred             cccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhCCCCHHHhhhcc
Confidence             2345678899999999887 7889999999999999999999999755      2445566666667776664432222


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      ....+.       ....... ......  ...++..++..+.+||.+||..+|++|||++++++||||
T Consensus       231 ~~~~~~-------~~~~~~~-~~~~~~--~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~f  288 (288)
T cd07833         231 SNPRFA-------GVAFPEP-SQPESL--ERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQHPYF  288 (288)
T ss_pred             cCcccc-------ccccCCC-CCcHHH--HHhcCCccchHHHHHHHHHhccCchhcccHHHHhcCCCC
Confidence            111110       0000000 000000  111334457889999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=100.00  E-value=1.9e-37  Score=300.67  Aligned_cols=278  Identities=27%  Similarity=0.425  Sum_probs=204.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.+.||+|+||.||+|.+..+++.||+|.+....   ...+.+.+|+++++.+      .|+||+++++.+..   
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~------~h~~i~~~~~~~~~---   71 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQL------KHPNLVNLIEVFRR---   71 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhC------CCCCEeeeeeEEee---
Confidence            47999999999999999999999899999999876432   2234678899999998      78899999998875   


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                       ....++||||+ ++.+.......  ..+++..+..++.|++.||+|||+. ||+|+||||+||++              
T Consensus        72 -~~~~~~v~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~ql~~~l~~LH~~-~i~H~dl~p~nil~--------------  133 (286)
T cd07847          72 -KRKLHLVFEYCDHTVLNELEKNP--RGVPEHLIKKIIWQTLQAVNFCHKH-NCIHRDVKPENILI--------------  133 (286)
T ss_pred             -CCEEEEEEeccCccHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHHC-CceecCCChhhEEE--------------
Confidence             36899999999 44455444322  3589999999999999999999996 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc-
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF-  270 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~-  270 (447)
                                                                                +....++|+|||.+....... 
T Consensus       134 ----------------------------------------------------------~~~~~~~l~dfg~~~~~~~~~~  155 (286)
T cd07847         134 ----------------------------------------------------------TKQGQIKLCDFGFARILTGPGD  155 (286)
T ss_pred             ----------------------------------------------------------cCCCcEEECccccceecCCCcc
Confidence                                                                      335679999999997554322 


Q ss_pred             --ccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          271 --AEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       271 --~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                        ....++..|+|||.+.+ ..++.++|+|||||++|+|++|..||.+.+      ....+..+...++...........
T Consensus       156 ~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  229 (286)
T cd07847         156 DYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKS------DVDQLYLIRKTLGDLIPRHQQIFS  229 (286)
T ss_pred             cccCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHHHhCCCChHHhhhcc
Confidence              23457889999999876 457899999999999999999999997653      334444444544444332111100


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      . ..++...      ........... ..   .....+..+.+||.+||+.||++|||+.|++.||||
T Consensus       230 ~-~~~~~~~------~~~~~~~~~~~-~~---~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~~~f  286 (286)
T cd07847         230 T-NQFFKGL------SIPEPETREPL-ES---KFPNISSPALSFLKGCLQMDPTERLSCEELLEHPYF  286 (286)
T ss_pred             c-ccccccc------cCCCcccccCH-HH---HhccCCHHHHHHHHHHhcCCccccCCHHHHhcCCCC
Confidence            0 0000000      00000000000 00   011236788999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=5.6e-38  Score=327.80  Aligned_cols=253  Identities=26%  Similarity=0.334  Sum_probs=203.0

Q ss_pred             CceEEEEeecccCceEEEEEEeCCC-CeEEEEEEechh-HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRT-SSYVALKIQKSA-AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~-~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      ..|.+.+.||.|+||.||+|.+..+ +..||+|.+... ......+..|+++++.+      +|+||+++++.+...   
T Consensus        67 ~~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l------~Hpniv~~~~~~~~~---  137 (478)
T PTZ00267         67 HMYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAAC------DHFGIVKHFDDFKSD---  137 (478)
T ss_pred             eeEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhC------CCCCEeEEEEEEEEC---
Confidence            4599999999999999999988777 788999975443 33345677899999998      899999999998753   


Q ss_pred             cceEEEEEecc-cccHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~--~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                       ...|+||||+ +++|.+.+...  ....+++..+..++.|++.||+|||+. ||+||||||+||++             
T Consensus       138 -~~~~lv~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~-~ivHrDlkp~NIll-------------  202 (478)
T PTZ00267        138 -DKLLLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSR-KMMHRDLKSANIFL-------------  202 (478)
T ss_pred             -CEEEEEEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC-CEEECCcCHHhEEE-------------
Confidence             6899999999 88998877532  223588999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-  269 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-  269 (447)
                                                                                 +....+||+|||++...... 
T Consensus       203 -----------------------------------------------------------~~~~~~kL~DFgla~~~~~~~  223 (478)
T PTZ00267        203 -----------------------------------------------------------MPTGIIKLGDFGFSKQYSDSV  223 (478)
T ss_pred             -----------------------------------------------------------CCCCcEEEEeCcCceecCCcc
Confidence                                                                       33567999999999765432 


Q ss_pred             ----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          270 ----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       270 ----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                          ....+||+.|+|||++.+..++.++|||||||++|+|++|..||...+      ....+..+..  +..       
T Consensus       224 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~------~~~~~~~~~~--~~~-------  288 (478)
T PTZ00267        224 SLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPS------QREIMQQVLY--GKY-------  288 (478)
T ss_pred             ccccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHh--CCC-------
Confidence                233468999999999998889999999999999999999999996542      1111111110  000       


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                                                      ..++...+..+.+||.+||+.||++|||++++|.|||++..
T Consensus       289 --------------------------------~~~~~~~s~~~~~li~~~L~~dP~~Rps~~~~l~~~~~~~~  329 (478)
T PTZ00267        289 --------------------------------DPFPCPVSSGMKALLDPLLSKNPALRPTTQQLLHTEFLKYV  329 (478)
T ss_pred             --------------------------------CCCCccCCHHHHHHHHHHhccChhhCcCHHHHHhCHHHHHH
Confidence                                            01233456689999999999999999999999999998743

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=7.3e-38  Score=340.70  Aligned_cols=281  Identities=25%  Similarity=0.410  Sum_probs=209.5

Q ss_pred             CccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccc
Q 013220           30 GDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDH  106 (447)
Q Consensus        30 g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~  106 (447)
                      |+.+. ++|++.++||+|+||+||+|++..++..||+|++...   ......+..|+.+++.+      .|+||++++++
T Consensus         8 ge~~l-~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L------~HPNIVrl~d~   80 (1021)
T PTZ00266          8 GESRL-NEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMREL------KHKNIVRYIDR   80 (1021)
T ss_pred             Ccccc-CCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHc------CCCCcCeEEEE
Confidence            55554 6899999999999999999999999999999987643   33456788899999999      78999999998


Q ss_pred             ccccCCCcceEEEEEecc-cccHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhh------CCcccccCCCCCeEe
Q 013220          107 FKHAGPNGQHLCMVLEFL-GDSLLRLIKYSR--YKGLELNKVREICKYILTGLDYLHRE------LGIIHTDLKPENILL  177 (447)
Q Consensus       107 ~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~--~~~l~~~~~~~i~~qil~aL~~lH~~------~gIiH~Dikp~Nill  177 (447)
                      |...  ....+||||||+ +++|..++....  ...+++..++.|+.||+.||+|||+.      .+||||||||+|||+
T Consensus        81 f~de--~~~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL  158 (1021)
T PTZ00266         81 FLNK--ANQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFL  158 (1021)
T ss_pred             EEec--CCCEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEe
Confidence            8754  346799999999 889998886422  24589999999999999999999983      049999999999999


Q ss_pred             eecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeE
Q 013220          178 VSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKV  257 (447)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL  257 (447)
                      .........                                                    .   .......+....++|
T Consensus       159 ~s~~~~lg~----------------------------------------------------i---~~~~~n~ng~~iVKL  183 (1021)
T PTZ00266        159 STGIRHIGK----------------------------------------------------I---TAQANNLNGRPIAKI  183 (1021)
T ss_pred             ecCcccccc----------------------------------------------------c---cccccccCCCCceEE
Confidence            542100000                                                    0   000000022456899


Q ss_pred             eecCcccccccc--cccCCCCCCccChHHhhc--CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHH
Q 013220          258 VDFGNACRANKQ--FAEEIQTRQYRAPEVILR--AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMME  333 (447)
Q Consensus       258 ~Dfg~a~~~~~~--~~~~~gt~~y~aPE~l~~--~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~  333 (447)
                      +|||++......  ....+||+.|+|||++.+  ..++.++|||||||++|+|++|..||...+      ...   .++.
T Consensus       184 sDFGlAr~l~~~s~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~------~~~---qli~  254 (1021)
T PTZ00266        184 GDFGLSKNIGIESMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKAN------NFS---QLIS  254 (1021)
T ss_pred             ccCCccccccccccccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCC------cHH---HHHH
Confidence            999999754322  234478999999999965  357899999999999999999999996442      111   1111


Q ss_pred             HhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCc
Q 013220          334 LIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP  413 (447)
Q Consensus       334 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp  413 (447)
                      .+...+.                                     . .....+..+.+||..||+.+|.+|||+.|+|.||
T Consensus       255 ~lk~~p~-------------------------------------l-pi~~~S~eL~dLI~~~L~~dPeeRPSa~QlL~h~  296 (1021)
T PTZ00266        255 ELKRGPD-------------------------------------L-PIKGKSKELNILIKNLLNLSAKERPSALQCLGYQ  296 (1021)
T ss_pred             HHhcCCC-------------------------------------C-CcCCCCHHHHHHHHHHhcCChhHCcCHHHHhccH
Confidence            1111110                                     0 0012356788999999999999999999999999


Q ss_pred             ccccccCC
Q 013220          414 WLSLRNST  421 (447)
Q Consensus       414 ~f~~~~~~  421 (447)
                      ||+.....
T Consensus       297 ~ik~i~~p  304 (1021)
T PTZ00266        297 IIKNVGPP  304 (1021)
T ss_pred             HHhhcCCC
Confidence            99866443

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=6.2e-38  Score=312.38  Aligned_cols=257  Identities=19%  Similarity=0.320  Sum_probs=197.6

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|++.++||+|+||+||++++..+++.||+|++....    .....+.+|+.++..+      +|++|++++..+..  
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i~~~~~~~~~--   72 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNG------DNQWITTLHYAFQD--   72 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhC------CCCCEeeEEEEEec--
Confidence            36999999999999999999999999999999886532    2233567788888777      78999999998874  


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                        ...+++||||+ +++|.+++.... ..+++..++.++.||+.||+|||+. ||+||||||+||++             
T Consensus        73 --~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~~~~qi~~al~~lH~~-~iiHrDlkp~Nili-------------  135 (332)
T cd05623          73 --ENNLYLVMDYYVGGDLLTLLSKFE-DRLPEDMARFYLAEMVIAIDSVHQL-HYVHRDIKPDNILM-------------  135 (332)
T ss_pred             --CCEEEEEEeccCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC-CeEecCCCHHHEEE-------------
Confidence              36899999999 889998886532 3588999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-  269 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-  269 (447)
                                                                                 +....++|+|||++...... 
T Consensus       136 -----------------------------------------------------------~~~~~~kL~DfG~a~~~~~~~  156 (332)
T cd05623         136 -----------------------------------------------------------DMNGHIRLADFGSCLKLMEDG  156 (332)
T ss_pred             -----------------------------------------------------------CCCCCEEEeecchheecccCC
Confidence                                                                       34567999999998643221 


Q ss_pred             ---cccCCCCCCccChHHhhc-----CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          270 ---FAEEIQTRQYRAPEVILR-----AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       270 ---~~~~~gt~~y~aPE~l~~-----~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                         ....+||+.|+|||++..     ..++.++|+|||||++|+|++|+.||...+      ......   .+..... .
T Consensus       157 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~~------~~~~~~---~i~~~~~-~  226 (332)
T cd05623         157 TVQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAES------LVETYG---KIMNHKE-R  226 (332)
T ss_pred             cceecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCCC------HHHHHH---HHhCCCc-c
Confidence               123478999999999863     357899999999999999999999997542      111111   1111000 0


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCC--CCChHHHhcCccccccc
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEK--RPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~k--Rpta~elL~hp~f~~~~  419 (447)
                      +                                 .-+.....++.++.+||++||..++..  |++++++++||||...+
T Consensus       227 ~---------------------------------~~p~~~~~~s~~~~~li~~ll~~~~~r~~r~~~~~~~~h~~f~~~~  273 (332)
T cd05623         227 F---------------------------------QFPAQVTDVSEDAKDLIRRLICSREHRLGQNGIEDFKQHPFFTGID  273 (332)
T ss_pred             c---------------------------------cCCCccccCCHHHHHHHHHHccChhhhcCCCCHHHHhCCCCcCCCC
Confidence            0                                 000011234678899999999765544  68999999999998643

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=1.1e-37  Score=305.37  Aligned_cols=261  Identities=29%  Similarity=0.471  Sum_probs=208.0

Q ss_pred             cccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceeeeecc
Q 013220           27 VRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVIRLID  105 (447)
Q Consensus        27 ~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~  105 (447)
                      +..|+..  .+|++.++||+|+||.||+|++..++..|++|.+.... .....+.+|+++++.+      .|+||+++++
T Consensus        13 ~~~~~~~--~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~------~h~~v~~~~~   84 (296)
T cd06654          13 VSVGDPK--KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMREN------KNPNIVNYLD   84 (296)
T ss_pred             cccCCcc--cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhC------CCCCEeeEEE
Confidence            4566666  68999999999999999999998899999999776432 3346788899999988      7899999999


Q ss_pred             cccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCC
Q 013220          106 HFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       106 ~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~  184 (447)
                      .+..    +.+.|+||||+ +++|.+++..   ..+++..+..++.|++.||+|||+. ||+|+||||+||+++      
T Consensus        85 ~~~~----~~~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~i~~ql~~aL~~LH~~-gi~H~dLkp~Nill~------  150 (296)
T cd06654          85 SYLV----GDELWVVMEYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHSN-QVIHRDIKSDNILLG------  150 (296)
T ss_pred             EEEe----CCEEEEeecccCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEEc------
Confidence            8875    36899999999 8899888753   2478899999999999999999996 999999999999993      


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                        ....++|+|||.+.
T Consensus       151 ------------------------------------------------------------------~~~~~kl~dfg~~~  164 (296)
T cd06654         151 ------------------------------------------------------------------MDGSVKLTDFGFCA  164 (296)
T ss_pred             ------------------------------------------------------------------CCCCEEECccccch
Confidence                                                                              35679999999886


Q ss_pred             ccccc---cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          265 RANKQ---FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       265 ~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                      .....   .....+++.|+|||.+.+..++.++|+|||||++|+|++|+.||......      ....... ..+..   
T Consensus       165 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~------~~~~~~~-~~~~~---  234 (296)
T cd06654         165 QITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPL------RALYLIA-TNGTP---  234 (296)
T ss_pred             hccccccccCcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCHH------HhHHHHh-cCCCC---
Confidence            54322   23346889999999998888899999999999999999999999654210      0000000 00000   


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccC
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~  420 (447)
                                                         ....+..++..+.+||.+||..||++|||+.++++||||...+.
T Consensus       235 -----------------------------------~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~eil~~~~~~~~~~  278 (296)
T cd06654         235 -----------------------------------ELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFLKIAKP  278 (296)
T ss_pred             -----------------------------------CCCCccccCHHHHHHHHHHCcCCcccCcCHHHHhhChhhhccCC
Confidence                                               00122345567889999999999999999999999999987654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=2.1e-37  Score=295.31  Aligned_cols=249  Identities=24%  Similarity=0.363  Sum_probs=203.0

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      .|.+.+.||+|++|.||+|++..++..|++|.+...   ......+.+|+++++.+      +|+||+++++.+...   
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~~---   71 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKL------DSSYIIRYYESFLDK---   71 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhc------CCCCeehheeeeccC---
Confidence            488999999999999999999999999999987643   34456788899999998      789999999988753   


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                       ...++||||+ +++|.+++.......++...+..++.|++.||.|||+. ||+|+||||+||++.              
T Consensus        72 -~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~-~i~h~dl~~~nili~--------------  135 (256)
T cd08529          72 -GKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSK-KILHRDIKSLNLFLD--------------  135 (256)
T ss_pred             -CEEEEEEEeCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCcceEEEe--------------
Confidence             6899999999 88999988765445688999999999999999999996 999999999999993              


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc--
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF--  270 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~--  270 (447)
                                                                                ....++|+|||.+.......  
T Consensus       136 ----------------------------------------------------------~~~~~~l~df~~~~~~~~~~~~  157 (256)
T cd08529         136 ----------------------------------------------------------AYDNVKIGDLGVAKLLSDNTNF  157 (256)
T ss_pred             ----------------------------------------------------------CCCCEEEcccccceeccCccch
Confidence                                                                      35679999999887544321  


Q ss_pred             -ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 -AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 -~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                       ....++..|+|||++.+..++.++|+|||||++++|++|..||...+      .......+.+  +..           
T Consensus       158 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~------~~~~~~~~~~--~~~-----------  218 (256)
T cd08529         158 ANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANN------QGALILKIIR--GVF-----------  218 (256)
T ss_pred             hhccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHc--CCC-----------
Confidence             23367889999999998889999999999999999999999996542      1111111110  000           


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                                                  ..++...+..+.++|.+||+.+|++||++.++++|||+
T Consensus       219 ----------------------------~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~~~~  256 (256)
T cd08529         219 ----------------------------PPVSQMYSQQLAQLIDQCLTKDYRQRPDTFQLLRNPSL  256 (256)
T ss_pred             ----------------------------CCCccccCHHHHHHHHHHccCCcccCcCHHHHhhCCCC
Confidence                                        11223446689999999999999999999999999996

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.7e-37  Score=310.69  Aligned_cols=292  Identities=31%  Similarity=0.487  Sum_probs=223.5

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      .++|.+.+.||+|++|.||+|++..++..||+|++...   ......+.+|+++++.+      .|+||+++++++....
T Consensus        14 ~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~~~   87 (343)
T cd07851          14 PDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHM------DHENVIGLLDVFTPAS   87 (343)
T ss_pred             cCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhc------cCCCHHHHHHHhhccc
Confidence            47899999999999999999999999999999987642   23345677899999998      7899999998876542


Q ss_pred             C--CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          112 P--NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       112 ~--~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                      .  .....++||||++++|.+++..   ..+++..+..++.|++.||+|||+. ||+|+||||+||++            
T Consensus        88 ~~~~~~~~~lv~e~~~~~L~~~~~~---~~l~~~~~~~~~~ql~~aL~~LH~~-gi~H~dlkp~Nill------------  151 (343)
T cd07851          88 SLEDFQDVYLVTHLMGADLNNIVKC---QKLSDDHIQFLVYQILRGLKYIHSA-GIIHRDLKPSNIAV------------  151 (343)
T ss_pred             cccccccEEEEEecCCCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHeEE------------
Confidence            1  2245999999998899888764   3489999999999999999999996 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                  +....++|+|||.+......
T Consensus       152 ------------------------------------------------------------~~~~~~kL~dfg~~~~~~~~  171 (343)
T cd07851         152 ------------------------------------------------------------NEDCELKILDFGLARHTDDE  171 (343)
T ss_pred             ------------------------------------------------------------CCCCCEEEcccccccccccc
Confidence                                                                        33567999999999776655


Q ss_pred             cccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          270 FAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      .....++..|+|||.+.+. .++.++|+|||||++|++++|+.||...      .....+..+.+..+..++.+......
T Consensus       172 ~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~  245 (343)
T cd07851         172 MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGS------DHIDQLKRIMNLVGTPDEELLQKISS  245 (343)
T ss_pred             ccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCC------ChHHHHHHHHHhcCCCCHHHHhhccc
Confidence            5556788999999998764 5789999999999999999999999765      34556677777777777666433321


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCCcccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDET  425 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~~~~~  425 (447)
                      ..  .   .  .............. ..   .....+..+.+||.+||+.||++|||+.++++||||........+.
T Consensus       246 ~~--~---~--~~~~~~~~~~~~~~-~~---~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~h~~~~~~~~~~~~~  311 (343)
T cd07851         246 ES--A---R--NYIQSLPQMPKKDF-KE---VFSGANPLAIDLLEKMLVLDPDKRITAAEALAHPYLAEYHDPEDEP  311 (343)
T ss_pred             hh--H---H--HHHHhccccCCCCH-HH---HhccCCHHHHHHHHHhCCCChhhCCCHHHHhcCCCccccCCCcccc
Confidence            10  0   0  00000000000000 00   0112366899999999999999999999999999999876655433

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9.5e-38  Score=299.11  Aligned_cols=249  Identities=26%  Similarity=0.405  Sum_probs=200.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH------HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA------QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~------~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      ..|.+.+.||+|++|.||+|.+..+++.||+|.+....      .....+.+|+++++.+      +|+||+++++++..
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~   75 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNL------QHERIVQYYGCLRD   75 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhC------CCCCeeeeEEEEcc
Confidence            46999999999999999999999999999999875432      1234678899999998      78999999999875


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                      .    ...++||||+ +++|.+.+...  ..+++..+..++.|++.||+|||+. ||+|+||+|+||++           
T Consensus        76 ~----~~~~~v~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lH~~-~i~H~dl~p~nilv-----------  137 (263)
T cd06625          76 D----ETLSIFMEYMPGGSVKDQLKAY--GALTETVTRKYTRQILEGVEYLHSN-MIVHRDIKGANILR-----------  137 (263)
T ss_pred             C----CeEEEEEEECCCCcHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEE-----------
Confidence            4    6999999999 88898887643  3488899999999999999999996 99999999999999           


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                   +.+..++|+|||.+.....
T Consensus       138 -------------------------------------------------------------~~~~~~~l~dfg~~~~~~~  156 (263)
T cd06625         138 -------------------------------------------------------------DSAGNVKLGDFGASKRLQT  156 (263)
T ss_pred             -------------------------------------------------------------cCCCCEEEeecccceeccc
Confidence                                                                         3356799999999864332


Q ss_pred             cc------ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh
Q 013220          269 QF------AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  342 (447)
Q Consensus       269 ~~------~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (447)
                      ..      ....++..|+|||.+.+..++.++|||||||++|+|++|+.||...+      .   ...+......     
T Consensus       157 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~------~---~~~~~~~~~~-----  222 (263)
T cd06625         157 ICSSGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFE------A---MAAIFKIATQ-----  222 (263)
T ss_pred             cccccccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCccccc------h---HHHHHHHhcc-----
Confidence            11      23457789999999998889999999999999999999999996432      1   1111111000     


Q ss_pred             hhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                                                      .....++...+..+.++|.+||..+|.+|||+.|+|+||||
T Consensus       223 --------------------------------~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~~~~  263 (263)
T cd06625         223 --------------------------------PTNPQLPSHVSPDARNFLRRTFVENAKKRPSAEELLRHFFV  263 (263)
T ss_pred             --------------------------------CCCCCCCccCCHHHHHHHHHHhhcCcccCCCHHHHhhCCCC
Confidence                                            00112344556788999999999999999999999999998

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=9.9e-39  Score=317.86  Aligned_cols=252  Identities=26%  Similarity=0.426  Sum_probs=215.1

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|.+++.+|.|+||.+++++++..+..|++|.+....   ...+....|+.++.++      .|||||.+.+.|...  
T Consensus         4 ~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~------~hP~iv~y~ds~~~~--   75 (426)
T KOG0589|consen    4 DNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKL------LHPNIVEYKDSFEED--   75 (426)
T ss_pred             chhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhc------cCCCeeeeccchhcC--
Confidence            67999999999999999999999999999999766543   3345778899999998      899999999999974  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                       +..++|||+|| ||++.+.+...+...++++.+..|+.|++.|+.|||++ .|+|||||+.||+++.            
T Consensus        76 -~~~l~Ivm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~-~iLHRDlK~~Nifltk------------  141 (426)
T KOG0589|consen   76 -GQLLCIVMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHEN-RVLHRDLKCANIFLTK------------  141 (426)
T ss_pred             -CceEEEEEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhh-hhhcccchhhhhhccc------------
Confidence             45599999999 99999999887767799999999999999999999997 9999999999999943            


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                  ...++|.|||+|+.....  
T Consensus       142 ------------------------------------------------------------~~~VkLgDfGlaK~l~~~~~  161 (426)
T KOG0589|consen  142 ------------------------------------------------------------DKKVKLGDFGLAKILNPEDS  161 (426)
T ss_pred             ------------------------------------------------------------cCceeecchhhhhhcCCchh
Confidence                                                                        556899999999876644  


Q ss_pred             -cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          270 -FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       270 -~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                       ....+||+.|++||++.+.+|..|+|||||||++|+|++-+.+|...+.      ...+..+.+..             
T Consensus       162 ~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~m------~~Li~ki~~~~-------------  222 (426)
T KOG0589|consen  162 LASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASNM------SELILKINRGL-------------  222 (426)
T ss_pred             hhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCccch------HHHHHHHhhcc-------------
Confidence             3456899999999999999999999999999999999999999987642      22222222211             


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  416 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~  416 (447)
                                                  ..+++...+.+++.+++.||..+|+.||+|.++|.+|.+.
T Consensus       223 ----------------------------~~Plp~~ys~el~~lv~~~l~~~P~~RPsa~~LL~~P~l~  262 (426)
T KOG0589|consen  223 ----------------------------YSPLPSMYSSELRSLVKSMLRKNPEHRPSALELLRRPHLL  262 (426)
T ss_pred             ----------------------------CCCCCccccHHHHHHHHHHhhcCCccCCCHHHHhhChhhh
Confidence                                        1235566788999999999999999999999999999776

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=5.9e-38  Score=312.49  Aligned_cols=256  Identities=19%  Similarity=0.296  Sum_probs=198.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|++.++||+|+||+||++++..+++.||+|++....    .....+.+|..++..+      +|++|++++.++..  
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i~~l~~~~~~--   72 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNG------DCQWITTLHYAFQD--   72 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhC------CCCCEeeEEEEEEc--
Confidence            47999999999999999999999999999999886532    2234577788888877      78999999998874  


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                        ....|+||||+ +++|.+++.... ..+++..++.++.|++.||+|||++ ||+||||||+||++             
T Consensus        73 --~~~~~lv~Ey~~gg~L~~~l~~~~-~~l~~~~~~~~~~qi~~~L~~lH~~-~iiHrDlkp~Nill-------------  135 (331)
T cd05624          73 --ENYLYLVMDYYVGGDLLTLLSKFE-DRLPEDMARFYIAEMVLAIHSIHQL-HYVHRDIKPDNVLL-------------  135 (331)
T ss_pred             --CCEEEEEEeCCCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC-CeeeccCchHHEEE-------------
Confidence              47899999999 899998886532 3588999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF  270 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~  270 (447)
                                                                                 +....++|+|||++.......
T Consensus       136 -----------------------------------------------------------~~~~~~kl~DfG~a~~~~~~~  156 (331)
T cd05624         136 -----------------------------------------------------------DMNGHIRLADFGSCLKMNQDG  156 (331)
T ss_pred             -----------------------------------------------------------cCCCCEEEEeccceeeccCCC
Confidence                                                                       335679999999986544321


Q ss_pred             ----ccCCCCCCccChHHhhc-----CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          271 ----AEEIQTRQYRAPEVILR-----AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       271 ----~~~~gt~~y~aPE~l~~-----~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                          ...+|++.|+|||++.+     ..++.++|+|||||++|+|++|+.||...+      .......+.......+  
T Consensus       157 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~------~~~~~~~i~~~~~~~~--  228 (331)
T cd05624         157 TVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAES------LVETYGKIMNHEERFQ--  228 (331)
T ss_pred             ceeeccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccCCC------HHHHHHHHHcCCCccc--
Confidence                22468999999999975     457889999999999999999999997542      1111111110000000  


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCC--CCChHHHhcCcccccc
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEK--RPTAQQCLQHPWLSLR  418 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~k--Rpta~elL~hp~f~~~  418 (447)
                                                         .+.....+++++.+||.+||..++.+  |++++++++||||+..
T Consensus       229 -----------------------------------~p~~~~~~~~~~~~li~~ll~~~~~~~~~~~~~~~~~h~~f~~~  272 (331)
T cd05624         229 -----------------------------------FPSHITDVSEEAKDLIQRLICSRERRLGQNGIEDFKKHAFFEGI  272 (331)
T ss_pred             -----------------------------------CCCccccCCHHHHHHHHHHccCchhhcCCCCHHHHhcCCCcCCC
Confidence                                               00011224678999999999876554  4689999999999864

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=100.00  E-value=1.3e-37  Score=306.62  Aligned_cols=284  Identities=21%  Similarity=0.336  Sum_probs=205.9

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      +|++.++||+|+||.||+|.+..++..+|+|.++.+  ......+.+|+++++.+      +|+||+++++.+..    +
T Consensus         2 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~----~   71 (308)
T cd06615           2 DFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHEC------NSPYIVGFYGAFYS----D   71 (308)
T ss_pred             CceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhC------CCCCCCeEEEEEee----C
Confidence            699999999999999999999999999999987643  23345688899999999      88999999999875    3


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ...++||||+ +++|.+.+...  ..+++..+..++.|++.||+|||++.+++|+||||+||++.               
T Consensus        72 ~~~~lv~ey~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dl~p~nil~~---------------  134 (308)
T cd06615          72 GEISICMEHMDGGSLDQVLKKA--GRIPENILGKISIAVLRGLTYLREKHKIMHRDVKPSNILVN---------------  134 (308)
T ss_pred             CEEEEEeeccCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhhCCEEECCCChHHEEEe---------------
Confidence            6899999999 78998888654  45889999999999999999999744999999999999993               


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-ccc
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-FAE  272 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-~~~  272 (447)
                                                                               .+..++|+|||.+...... ...
T Consensus       135 ---------------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~  157 (308)
T cd06615         135 ---------------------------------------------------------SRGEIKLCDFGVSGQLIDSMANS  157 (308)
T ss_pred             ---------------------------------------------------------cCCcEEEccCCCccccccccccc
Confidence                                                                     3566999999988654322 334


Q ss_pred             CCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccc-
Q 013220          273 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD-  351 (447)
Q Consensus       273 ~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-  351 (447)
                      ..++..|+|||.+.+..++.++|+|||||++|+|++|..||...+.          ......++............... 
T Consensus       158 ~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  227 (308)
T cd06615         158 FVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDA----------KELEAMFGRPVSEGEAKESHRPVS  227 (308)
T ss_pred             CCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcch----------hhHHHhhcCccccccccCCccccc
Confidence            5788999999999888889999999999999999999999965421          11112222211111000000000 


Q ss_pred             -hhcccchhhhhhhcccCchhHHhhh-hcCCCh-hhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          352 -YFDRHGDLKRIRRLKFWSLDRLLVD-KYRFSE-TDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       352 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                       ...........    ....+..... .+..+. ..+.++.+|+.+||..||++|||++|+++||||...
T Consensus       228 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~  293 (308)
T cd06615         228 GHPPDSPRPMAI----FELLDYIVNEPPPKLPSGAFSDEFQDFVDKCLKKNPKERADLKELTKHPFIKRA  293 (308)
T ss_pred             CCCCCccchhhH----HHHHHHHhcCCCccCcCcccCHHHHHHHHHHccCChhhCcCHHHHhcChhhhhc
Confidence             00000000000    0000001000 111111 246679999999999999999999999999999753

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=100.00  E-value=1.3e-37  Score=303.53  Aligned_cols=281  Identities=26%  Similarity=0.403  Sum_probs=207.5

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      .+|++.+.||+|+||.||+|.+..++..||+|++....  .....+.+|+++++.+      .|+||+++++++..    
T Consensus         5 ~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l------~h~ni~~~~~~~~~----   74 (291)
T cd07870           5 TSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGL------KHANIVLLHDIIHT----   74 (291)
T ss_pred             ceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhc------CCCCEeEEEEEEec----
Confidence            67999999999999999999999999999999876543  2223567899999999      78999999998874    


Q ss_pred             cceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          114 GQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       114 ~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      +...|+||||+++++.+.+.... ..+.+..+..++.|++.||+|||+. ||+|+||||+||++                
T Consensus        75 ~~~~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~L~~lH~~-~i~H~dlkp~Nil~----------------  136 (291)
T cd07870          75 KETLTFVFEYMHTDLAQYMIQHP-GGLHPYNVRLFMFQLLRGLAYIHGQ-HILHRDLKPQNLLI----------------  136 (291)
T ss_pred             CCeEEEEEecccCCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCChHHEEE----------------
Confidence            46899999999777777664432 3477888999999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---c
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---F  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~  270 (447)
                                                                              +....++|+|||.+......   .
T Consensus       137 --------------------------------------------------------~~~~~~~l~Dfg~~~~~~~~~~~~  160 (291)
T cd07870         137 --------------------------------------------------------SYLGELKLADFGLARAKSIPSQTY  160 (291)
T ss_pred             --------------------------------------------------------cCCCcEEEeccccccccCCCCCCC
Confidence                                                                    33567999999988653322   2


Q ss_pred             ccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 AEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      ....++..|+|||.+.+. .++.++|+|||||++|+|++|..||...+     .....+..+...+|.++..........
T Consensus       161 ~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (291)
T cd07870         161 SSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVS-----DVFEQLEKIWTVLGVPTEDTWPGVSKL  235 (291)
T ss_pred             CCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCch-----hHHHHHHHHHHHcCCCChhhhhhhhhc
Confidence            234578899999998764 57889999999999999999999997553     234455555566665554432211111


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      ..+.......     ......... ...  .  ..+..+.+|+.+||+.||.+|||++|++.||||
T Consensus       236 ~~~~~~~~~~-----~~~~~~~~~-~~~--~--~~~~~~~~ll~~~l~~dp~~R~t~~~~l~h~~~  291 (291)
T cd07870         236 PNYKPEWFLP-----CKPQQLRVV-WKR--L--SRPPKAEDLASQMLMMFPKDRISAQDALLHPYF  291 (291)
T ss_pred             ccccchhccc-----cCCcchhhh-ccc--c--CCChHHHHHHHHHhCcCcccCcCHHHHhcCCCC
Confidence            1111000000     000000000 000  0  124578899999999999999999999999998

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=7.4e-38  Score=304.23  Aligned_cols=260  Identities=23%  Similarity=0.408  Sum_probs=204.1

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      ++|++.+.||+|+||.||+|.+..++..||+|.++..  ......+.+|+++++.+      .|+||+++++.+...   
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i~~~~~~~~~~---   71 (286)
T cd06622           1 DEIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKA------VSPYIVDFYGAFFIE---   71 (286)
T ss_pred             ChhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhc------CCCcHHhhhhheecC---
Confidence            3689999999999999999999989999999987643  23345788899999998      789999999988753   


Q ss_pred             cceEEEEEecc-cccHHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSR-YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~-~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                       ...++||||+ +++|..++.... ...+++..+..++.|++.||.|||++.||+|+||||+||++              
T Consensus        72 -~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~--------------  136 (286)
T cd06622          72 -GAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHRDVKPTNVLV--------------  136 (286)
T ss_pred             -CeEEEEEeecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcCCEeeCCCCHHHEEE--------------
Confidence             6899999999 788888775431 23589999999999999999999963499999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc-
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF-  270 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~-  270 (447)
                                                                                +....++|+|||.+....... 
T Consensus       137 ----------------------------------------------------------~~~~~~~l~dfg~~~~~~~~~~  158 (286)
T cd06622         137 ----------------------------------------------------------NGNGQVKLCDFGVSGNLVASLA  158 (286)
T ss_pred             ----------------------------------------------------------CCCCCEEEeecCCcccccCCcc
Confidence                                                                      335679999999986543332 


Q ss_pred             ccCCCCCCccChHHhhcC------CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhh
Q 013220          271 AEEIQTRQYRAPEVILRA------GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  344 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~------~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (447)
                      ....++..|+|||.+.+.      .++.++|+|||||++|+|++|..||....      .......+..+....      
T Consensus       159 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~------~~~~~~~~~~~~~~~------  226 (286)
T cd06622         159 KTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPET------YANIFAQLSAIVDGD------  226 (286)
T ss_pred             ccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcc------hhhHHHHHHHHhhcC------
Confidence            234678899999998643      35789999999999999999999996532      111111111111111      


Q ss_pred             CCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          345 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                                                      ....+...+.++.+||.+||+.+|++||+++++++||||......
T Consensus       227 --------------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~~~~~~~~~~  271 (286)
T cd06622         227 --------------------------------PPTLPSGYSDDAQDFVAKCLNKIPNRRPTYAQLLEHPWLVKYKNA  271 (286)
T ss_pred             --------------------------------CCCCCcccCHHHHHHHHHHcccCcccCCCHHHHhcChhhhhccCC
Confidence                                            112334467789999999999999999999999999999877644

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-38  Score=289.19  Aligned_cols=256  Identities=29%  Similarity=0.406  Sum_probs=202.5

Q ss_pred             cccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEec-hhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           32 LFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQK-SAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        32 ~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~-~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      .+|+.||+++++||+|||+-||+++...++..||+|.+. ...+..+...+|++..+++      +|+||++++++-...
T Consensus        17 ~In~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf------~s~~vl~l~dh~l~~   90 (302)
T KOG2345|consen   17 IINNKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKF------NSPNVLRLVDHQLRE   90 (302)
T ss_pred             EEcCceEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhh------CCcchHHHHHHHHHh
Confidence            356899999999999999999999999999999999654 3446677899999999999      789999999986654


Q ss_pred             CC-CcceEEEEEecc-cccHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHhhCC--cccccCCCCCeEeeecCCCC
Q 013220          111 GP-NGQHLCMVLEFL-GDSLLRLIKYSRY--KGLELNKVREICKYILTGLDYLHRELG--IIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       111 ~~-~~~~~~lvmE~~-~~~L~~~~~~~~~--~~l~~~~~~~i~~qil~aL~~lH~~~g--IiH~Dikp~Nill~~~~~~~  184 (447)
                      .. ..+..|++++|+ .|+|.+.+....-  ..+++.++.+|+.+++.||++||+. .  +.||||||.||+++.     
T Consensus        91 ~~D~~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~-~~~yAH~DiKP~NILls~-----  164 (302)
T KOG2345|consen   91 EKDGKHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEK-EPPYAHRDIKPANILLSD-----  164 (302)
T ss_pred             hccCceeEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhcc-CCcccccCCCcceeEecC-----
Confidence            33 446799999999 8889988865432  3489999999999999999999996 7  999999999999943     


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                         ...++|.|||.+.
T Consensus       165 -------------------------------------------------------------------~~~~vl~D~GS~~  177 (302)
T KOG2345|consen  165 -------------------------------------------------------------------SGLPVLMDLGSAT  177 (302)
T ss_pred             -------------------------------------------------------------------CCceEEEeccCcc
Confidence                                                                               5679999999986


Q ss_pred             ccc------------cccccCCCCCCccChHHhhcC---CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHH
Q 013220          265 RAN------------KQFAEEIQTRQYRAPEVILRA---GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLA  329 (447)
Q Consensus       265 ~~~------------~~~~~~~gt~~y~aPE~l~~~---~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~  329 (447)
                      ...            +.+.....|..|+|||.+.-.   -.+.++|||||||++|.|+.|..||...-.++         
T Consensus       178 ~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~G---------  248 (302)
T KOG2345|consen  178 QAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQG---------  248 (302)
T ss_pred             ccceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhhcC---------
Confidence            543            223334579999999999743   45799999999999999999999996432111         


Q ss_pred             HHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCC--ChhhHHHHHHHHhhccccCCCCCCChH
Q 013220          330 LMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRF--SETDAREFAEFLVPLLDFTPEKRPTAQ  407 (447)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ll~~~L~~dP~kRpta~  407 (447)
                            |...-                               ++...+..+  ....++.+.+||+.||+.||.+||++.
T Consensus       249 ------gSlaL-------------------------------Av~n~q~s~P~~~~yse~l~~lik~mlqvdP~qRP~i~  291 (302)
T KOG2345|consen  249 ------GSLAL-------------------------------AVQNAQISIPNSSRYSEALHQLIKSMLQVDPNQRPTIP  291 (302)
T ss_pred             ------CeEEE-------------------------------eeeccccccCCCCCccHHHHHHHHHHhcCCcccCCCHH
Confidence                  00000                               000001111  123578999999999999999999999


Q ss_pred             HHhcC
Q 013220          408 QCLQH  412 (447)
Q Consensus       408 elL~h  412 (447)
                      +++.+
T Consensus       292 ~ll~~  296 (302)
T KOG2345|consen  292 ELLSK  296 (302)
T ss_pred             HHHHH
Confidence            99865

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=100.00  E-value=1.1e-37  Score=304.41  Aligned_cols=264  Identities=30%  Similarity=0.473  Sum_probs=206.2

Q ss_pred             CccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh-HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           30 GDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA-AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        30 g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      +++..++.|++.++||.|+||.||+|++..++..|++|++... ....+.+..|+++++.+      .|+||+++++.+.
T Consensus         6 ~~~~~~~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~   79 (292)
T cd06644           6 RDLDPNEVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATC------NHPYIVKLLGAFY   79 (292)
T ss_pred             cccCcchhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhC------CCCcEeeeEEEEE
Confidence            3456668899999999999999999999999999999987644 33456788899999998      8899999999887


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCc
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                      ..    ...++||||+ ++++...+.... ..+++..+..++.|++.||+|||+. |++|||+||+||++          
T Consensus        80 ~~----~~~~lv~e~~~~~~l~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lH~~-~i~H~dlkp~Nili----------  143 (292)
T cd06644          80 WD----GKLWIMIEFCPGGAVDAIMLELD-RGLTEPQIQVICRQMLEALQYLHSM-KIIHRDLKAGNVLL----------  143 (292)
T ss_pred             eC----CeEEEEEecCCCCcHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHhcC-CeeecCCCcceEEE----------
Confidence            53    5899999999 777776664332 4589999999999999999999996 99999999999999          


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                    +....++|+|||.+....
T Consensus       144 --------------------------------------------------------------~~~~~~kl~dfg~~~~~~  161 (292)
T cd06644         144 --------------------------------------------------------------TLDGDIKLADFGVSAKNV  161 (292)
T ss_pred             --------------------------------------------------------------cCCCCEEEccCccceecc
Confidence                                                                          335679999999886533


Q ss_pred             cc---cccCCCCCCccChHHhh-----cCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCC
Q 013220          268 KQ---FAEEIQTRQYRAPEVIL-----RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMP  339 (447)
Q Consensus       268 ~~---~~~~~gt~~y~aPE~l~-----~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~  339 (447)
                      ..   .....++..|+|||.+.     ...++.++|+|||||++|+|++|..||...+         ......+.....+
T Consensus       162 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~---------~~~~~~~~~~~~~  232 (292)
T cd06644         162 KTLQRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELN---------PMRVLLKIAKSEP  232 (292)
T ss_pred             ccccccceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCcccc---------HHHHHHHHhcCCC
Confidence            22   22345788999999985     3456889999999999999999999996542         1111111111111


Q ss_pred             HHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          340 RKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                      .                                    ....+...+..+.+||.+||+.||++||+++++++||||...+
T Consensus       233 ~------------------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~  276 (292)
T cd06644         233 P------------------------------------TLSQPSKWSMEFRDFLKTALDKHPETRPSAAQLLEHPFVSSVT  276 (292)
T ss_pred             c------------------------------------cCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHhcCccccccc
Confidence            0                                    0011233456788999999999999999999999999998765


Q ss_pred             CCc
Q 013220          420 STR  422 (447)
Q Consensus       420 ~~~  422 (447)
                      ...
T Consensus       277 ~~~  279 (292)
T cd06644         277 SNR  279 (292)
T ss_pred             cch
Confidence            443

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=1.4e-37  Score=310.46  Aligned_cols=291  Identities=29%  Similarity=0.449  Sum_probs=217.6

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      .+|++.+.||+|+||+||+|++..++..||+|.+...   ......+.+|+.+++.+      +|+||+++++++.....
T Consensus         5 ~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~ni~~~~~~~~~~~~   78 (337)
T cd07858           5 TKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHL------DHENVIAIKDIMPPPHR   78 (337)
T ss_pred             cceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhc------CCCCccchHHheecccc
Confidence            6899999999999999999999999999999987642   22344667899999998      78999999998765321


Q ss_pred             -CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 -NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 -~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                       .....++||||++++|.+.+...  ..+++..+..++.|++.||.|||++ +++|+||||+||++              
T Consensus        79 ~~~~~~~lv~e~~~~~L~~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~-~i~H~dlkp~Nil~--------------  141 (337)
T cd07858          79 EAFNDVYIVYELMDTDLHQIIRSS--QTLSDDHCQYFLYQLLRGLKYIHSA-NVLHRDLKPSNLLL--------------  141 (337)
T ss_pred             cccCcEEEEEeCCCCCHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhC-CEecCCCCHHHEEE--------------
Confidence             22468999999988888887643  4589999999999999999999996 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                +....++|+|||++......  
T Consensus       142 ----------------------------------------------------------~~~~~~kL~Dfg~~~~~~~~~~  163 (337)
T cd07858         142 ----------------------------------------------------------NANCDLKICDFGLARTTSEKGD  163 (337)
T ss_pred             ----------------------------------------------------------cCCCCEEECcCccccccCCCcc
Confidence                                                                      33567999999998754332  


Q ss_pred             -cccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          270 -FAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       270 -~~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                       .....++..|+|||.+.+ ..++.++|+|||||++|+|++|+.||.+.      +.......+.+..|..+........
T Consensus       164 ~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  237 (337)
T cd07858         164 FMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGK------DYVHQLKLITELLGSPSEEDLGFIR  237 (337)
T ss_pred             cccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCC------ChHHHHHHHHHHhCCCChHHhhhcC
Confidence             233467889999999875 45889999999999999999999999765      2445566666777766644321000


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCCccc
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE  424 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~~~~  424 (447)
                             ....................    .....++..+.+||.+||+.||++|||++++|+||||...+.....
T Consensus       238 -------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~li~~~l~~~P~~Rps~~ell~h~~~~~~~~~~~~  303 (337)
T cd07858         238 -------NEKARRYIRSLPYTPRQSFA----RLFPHANPLAIDLLEKMLVFDPSKRITVEEALAHPYLASLHDPSDE  303 (337)
T ss_pred             -------chhhhHHHHhcCcccccCHH----HHcccCCHHHHHHHHHHhcCChhhccCHHHHHcCcchhhhcCcccC
Confidence                   00000000000000000000    0112356788999999999999999999999999999887655443

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=100.00  E-value=2.6e-37  Score=307.55  Aligned_cols=296  Identities=30%  Similarity=0.498  Sum_probs=227.2

Q ss_pred             cCcccc-CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeec
Q 013220           29 VGDLFN-GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLI  104 (447)
Q Consensus        29 ~g~~~~-~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~  104 (447)
                      +|+++. .++|++.+.||.|+||.||+|++..++..||+|.+...   ......+.+|+++++.+      .|+||++++
T Consensus         2 ~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l------~hpniv~~~   75 (328)
T cd07856           2 FGTVFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHL------RHENIISLS   75 (328)
T ss_pred             CcceeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhc------CCCCeeeEe
Confidence            466533 57899999999999999999999999999999976432   22345678899999999      789999999


Q ss_pred             ccccccCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCC
Q 013220          105 DHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       105 ~~~~~~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~  184 (447)
                      ++|...   +...+++|||++++|...+..   ..+++..+..++.|++.||+|||+. ||+|+||+|+||++       
T Consensus        76 ~~~~~~---~~~~~lv~e~~~~~L~~~~~~---~~~~~~~~~~~~~ql~~aL~~LH~~-~iiH~dl~p~Nili-------  141 (328)
T cd07856          76 DIFISP---LEDIYFVTELLGTDLHRLLTS---RPLEKQFIQYFLYQILRGLKYVHSA-GVVHRDLKPSNILI-------  141 (328)
T ss_pred             eeEecC---CCcEEEEeehhccCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCHHHEeE-------
Confidence            988642   357899999998888877753   3478888899999999999999996 99999999999999       


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                       +....++|+|||.+.
T Consensus       142 -----------------------------------------------------------------~~~~~~~l~dfg~~~  156 (328)
T cd07856         142 -----------------------------------------------------------------NENCDLKICDFGLAR  156 (328)
T ss_pred             -----------------------------------------------------------------CCCCCEEeCcccccc
Confidence                                                                             335679999999997


Q ss_pred             ccccccccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhh
Q 013220          265 RANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  343 (447)
Q Consensus       265 ~~~~~~~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  343 (447)
                      ..........++..|+|||.+.+ ..++.++|+|||||++|+|++|..||...      ........+.+.+|..++++.
T Consensus       157 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~------~~~~~~~~~~~~~~~~~~~~~  230 (328)
T cd07856         157 IQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGK------DHVNQFSIITDLLGTPPDDVI  230 (328)
T ss_pred             ccCCCcCCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhCCCCHHHH
Confidence            66555455678899999998866 56889999999999999999999999765      345566677788888888775


Q ss_pred             hCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCCcc
Q 013220          344 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRD  423 (447)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~~~  423 (447)
                      .......       ................  .  ......+..+.++|.+||+.+|++|||+++++.||||........
T Consensus       231 ~~~~~~~-------~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~li~~~l~~~P~~R~t~~ell~~~~~~~~~~~~~  299 (328)
T cd07856         231 NTICSEN-------TLRFVQSLPKREPVPF--S--EKFKNADPSAIDLLEKMLVFDPQKRISAAEALAHPYLAPYHDPTD  299 (328)
T ss_pred             Hhccchh-------hHHHHhhccccCCCcH--H--HHcCCCCHHHHHHHHHHcCCChhhCCCHHHHhcCCccccccCCcc
Confidence            4322111       0000000000000000  0  011234578999999999999999999999999999998777766


Q ss_pred             ccc
Q 013220          424 ETK  426 (447)
Q Consensus       424 ~~~  426 (447)
                      +..
T Consensus       300 ~~~  302 (328)
T cd07856         300 EPV  302 (328)
T ss_pred             ccC
Confidence            633

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=100.00  E-value=4.3e-37  Score=299.79  Aligned_cols=264  Identities=28%  Similarity=0.398  Sum_probs=204.4

Q ss_pred             ccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           28 RVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        28 ~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      .+|+..  ++|.+.+.||+|+||.||+|.+..+++.+|+|++.........+.+|+.+++.+.     +|+||+++++++
T Consensus        16 ~~~~~~--~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~-----~h~ni~~~~~~~   88 (291)
T cd06639          16 SLGDPT--DTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEEIEAEYNILQSLP-----NHPNVVKFYGMF   88 (291)
T ss_pred             cCCCCC--CCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccccHHHHHHHHHHHHHHhc-----CCCCeEEEEEEE
Confidence            445543  6899999999999999999999999999999988765444567788999998885     689999999988


Q ss_pred             cccCC-CcceEEEEEecc-cccHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCC
Q 013220          108 KHAGP-NGQHLCMVLEFL-GDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP  183 (447)
Q Consensus       108 ~~~~~-~~~~~~lvmE~~-~~~L~~~~~~~--~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~  183 (447)
                      ..... .+...++||||+ +++|.+++...  ....+++..+..++.|++.||+|||+. ||+|+||||+||++      
T Consensus        89 ~~~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~ivH~dlkp~nili------  161 (291)
T cd06639          89 YKADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNN-RIIHRDVKGNNILL------  161 (291)
T ss_pred             EeccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCHHHEEE------
Confidence            75421 235799999999 88898877532  224588999999999999999999996 99999999999999      


Q ss_pred             CCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcc
Q 013220          184 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  263 (447)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a  263 (447)
                                                                                        +....++|+|||.+
T Consensus       162 ------------------------------------------------------------------~~~~~~kl~dfg~~  175 (291)
T cd06639         162 ------------------------------------------------------------------TTEGGVKLVDFGVS  175 (291)
T ss_pred             ------------------------------------------------------------------cCCCCEEEeecccc
Confidence                                                                              33567999999998


Q ss_pred             cccccc---cccCCCCCCccChHHhhcC-----CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHh
Q 013220          264 CRANKQ---FAEEIQTRQYRAPEVILRA-----GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI  335 (447)
Q Consensus       264 ~~~~~~---~~~~~gt~~y~aPE~l~~~-----~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~  335 (447)
                      ......   .....++..|+|||.+...     .++.++|+|||||++|+|++|+.||....      ....   +.+..
T Consensus       176 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~------~~~~---~~~~~  246 (291)
T cd06639         176 AQLTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMH------PVKT---LFKIP  246 (291)
T ss_pred             hhcccccccccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCc------HHHH---HHHHh
Confidence            654322   1234678899999998643     36789999999999999999999996542      1111   11111


Q ss_pred             CCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          336 GKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       336 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      ...+..                                    ...+...+..+.+||.+||+.||++||++.++++||||
T Consensus       247 ~~~~~~------------------------------------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~il~~~~~  290 (291)
T cd06639         247 RNPPPT------------------------------------LLHPEKWCRSFNHFISQCLIKDFEARPSVTHLLEHPFI  290 (291)
T ss_pred             cCCCCC------------------------------------CCcccccCHHHHHHHHHHhhcChhhCcCHHHHhcCccc
Confidence            110000                                    00122334578899999999999999999999999999


Q ss_pred             c
Q 013220          416 S  416 (447)
Q Consensus       416 ~  416 (447)
                      +
T Consensus       291 ~  291 (291)
T cd06639         291 K  291 (291)
T ss_pred             C
Confidence            5

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=100.00  E-value=2.3e-37  Score=307.28  Aligned_cols=290  Identities=31%  Similarity=0.477  Sum_probs=223.0

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC-C
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG-P  112 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~-~  112 (447)
                      +|++.+.||.|++|.||+|++..++..||+|.+...   ....+.+.+|+++++.+      +|+||+++++++.... .
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~~~~~   74 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHL------RHENIIGLLDILRPPSPE   74 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhc------CCcchhhhhhhhcccCcc
Confidence            699999999999999999999888999999987643   23456788999999999      7899999999887653 2


Q ss_pred             CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          113 NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       113 ~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      +...+|++|||++++|.+.+....  .+++..+..++.|++.||++||+. ||+|+||||+||++               
T Consensus        75 ~~~~~~lv~e~~~~~l~~~l~~~~--~l~~~~~~~i~~~l~~~l~~LH~~-gi~H~dlkp~nili---------------  136 (330)
T cd07834          75 DFNDVYIVTELMETDLHKVIKSPQ--PLTDDHIQYFLYQILRGLKYLHSA-NVIHRDLKPSNILV---------------  136 (330)
T ss_pred             cccceEEEecchhhhHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEE---------------
Confidence            234789999999878888876433  589999999999999999999996 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---  269 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---  269 (447)
                                                                               +.++.++|+|||.+......   
T Consensus       137 ---------------------------------------------------------~~~~~~~L~dfg~~~~~~~~~~~  159 (330)
T cd07834         137 ---------------------------------------------------------NSNCDLKICDFGLARGVDPDEDE  159 (330)
T ss_pred             ---------------------------------------------------------cCCCCEEEcccCceEeecccccc
Confidence                                                                     33577999999999765433   


Q ss_pred             ---cccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          270 ---FAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       270 ---~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                         .....++..|+|||.+.+. .++.++|+|||||++|+|++|..||...+      .......++...|..+......
T Consensus       160 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~  233 (330)
T cd07834         160 KGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRD------YIDQLNLIVEVLGTPSEEDLKF  233 (330)
T ss_pred             cccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCC------HHHHHHHHHHhcCCCChhHhhh
Confidence               2234678899999999887 78999999999999999999999998763      5566677777777777554321


Q ss_pred             CC--CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCCcc
Q 013220          346 GA--QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRD  423 (447)
Q Consensus       346 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~~~  423 (447)
                      ..  ....+...         ..........    ......+..+.+||.+||+.+|++|||++++|.||||+.......
T Consensus       234 ~~~~~~~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~~~~~  300 (330)
T cd07834         234 ITSEKARNYLKS---------LPKKPKKPLS----KLFPGASPEAIDLLEKMLVFDPKKRITADEALAHPYLAQLHDPED  300 (330)
T ss_pred             ccccchhhHHhh---------cccCCcchhH----HhcccCCHHHHHHHHHHccCChhhCCCHHHHHhCccHHhhccccc
Confidence            00  00001000         0000000000    012235678999999999999999999999999999998765544


Q ss_pred             ccc
Q 013220          424 ETK  426 (447)
Q Consensus       424 ~~~  426 (447)
                      +..
T Consensus       301 ~~~  303 (330)
T cd07834         301 EPV  303 (330)
T ss_pred             CCC
Confidence            433

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=100.00  E-value=4.7e-37  Score=307.52  Aligned_cols=289  Identities=29%  Similarity=0.470  Sum_probs=219.0

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.+.||+|+||.||+|.+..++..||+|.+...   ......+.+|+++++.+      .|+||+++++++.....
T Consensus        15 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~~~~   88 (343)
T cd07880          15 DRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHM------KHENVIGLLDVFTPDLS   88 (343)
T ss_pred             cceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhc------CCCCccceeeeecCCcc
Confidence            6899999999999999999999999999999987542   22345678899999999      78999999998865321


Q ss_pred             C--cceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          113 N--GQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       113 ~--~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                      .  ....++||||++++|..++..   ..+++..++.++.|++.||+|||+. ||+||||||+||++             
T Consensus        89 ~~~~~~~~lv~e~~~~~l~~~~~~---~~l~~~~~~~i~~qi~~al~~LH~~-gi~H~dlkp~Nill-------------  151 (343)
T cd07880          89 LDRFHDFYLVMPFMGTDLGKLMKH---EKLSEDRIQFLVYQMLKGLKYIHAA-GIIHRDLKPGNLAV-------------  151 (343)
T ss_pred             ccccceEEEEEecCCCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEE-------------
Confidence            1  135799999998888877753   3489999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF  270 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~  270 (447)
                                                                                 +....++|+|||.+.......
T Consensus       152 -----------------------------------------------------------~~~~~~kl~dfg~~~~~~~~~  172 (343)
T cd07880         152 -----------------------------------------------------------NEDCELKILDFGLARQTDSEM  172 (343)
T ss_pred             -----------------------------------------------------------cCCCCEEEeecccccccccCc
Confidence                                                                       335679999999997666555


Q ss_pred             ccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 AEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      ....+++.|+|||.+.+. .++.++|+|||||++|++++|..||...      ........++...+..+..+.......
T Consensus       173 ~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (343)
T cd07880         173 TGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGH------DHLDQLMEIMKVTGTPSKEFVQKLQSE  246 (343)
T ss_pred             cccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHhcCCCCHHHHHhhcch
Confidence            556778999999999763 5789999999999999999999999755      234455566666666665553332211


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCCcc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRD  423 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~~~  423 (447)
                      ..       ...............    ..+....+..+.++|.+||+.||++|||+.++++||||+.......
T Consensus       247 ~~-------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~l~~~~~~~~~~~~~  309 (343)
T cd07880         247 DA-------KNYVKKLPRFRKKDF----RSLLPNANPLAVNVLEKMLVLDAESRITAAEALAHPYFEEFHDPED  309 (343)
T ss_pred             hH-------HHHHHhccccCcchH----HHhccCCChHHHHHHHHHcCCChhhCCCHHHHhcCccHhhhcCccc
Confidence            10       000000000000000    0112344667899999999999999999999999999998765433

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.9e-39  Score=302.65  Aligned_cols=268  Identities=27%  Similarity=0.379  Sum_probs=221.7

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH----hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ----FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~----~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      +.|...+.||+|+||.|-+|+-+.+++.||+|+++++..    ...+...|-++|+..      .||.+..+-=.|.   
T Consensus       168 ~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~------~HPFLt~LKYsFQ---  238 (516)
T KOG0690|consen  168 EDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNC------RHPFLTSLKYSFQ---  238 (516)
T ss_pred             chhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhc------cCcHHHHhhhhhc---
Confidence            579999999999999999999999999999999887642    344566788999988      6666554443343   


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                       +.+++|+||||. ||.|+..+.+.  +.+++..++.+-..|+.||.|||++ +||.||+|.+|.|+             
T Consensus       239 -t~drlCFVMeyanGGeLf~HLsre--r~FsE~RtRFYGaEIvsAL~YLHs~-~ivYRDlKLENLlL-------------  301 (516)
T KOG0690|consen  239 -TQDRLCFVMEYANGGELFFHLSRE--RVFSEDRTRFYGAEIVSALGYLHSR-NIVYRDLKLENLLL-------------  301 (516)
T ss_pred             -cCceEEEEEEEccCceEeeehhhh--hcccchhhhhhhHHHHHHhhhhhhC-Ceeeeechhhhhee-------------
Confidence             668999999999 99998888754  4599999999999999999999997 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccc---cc
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR---AN  267 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~---~~  267 (447)
                                                                                 +.++.+|+.|||+++.   ..
T Consensus       302 -----------------------------------------------------------DkDGHIKitDFGLCKE~I~~g  322 (516)
T KOG0690|consen  302 -----------------------------------------------------------DKDGHIKITDFGLCKEEIKYG  322 (516)
T ss_pred             -----------------------------------------------------------ccCCceEeeecccchhccccc
Confidence                                                                       7789999999999974   23


Q ss_pred             cccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          268 KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       268 ~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                      ..-..+|||+.|.|||++...-|+.++|.|.+||+||+|+.|++||...+      ++..                    
T Consensus       323 ~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~d------h~kL--------------------  376 (516)
T KOG0690|consen  323 DTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKD------HEKL--------------------  376 (516)
T ss_pred             ceeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccccc------hhHH--------------------
Confidence            34456899999999999999999999999999999999999999998764      1111                    


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC-----ChHHHhcCcccccccCCc
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRNSTR  422 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp-----ta~elL~hp~f~~~~~~~  422 (447)
                                            ++=++.....+|+..++++..||..+|..||.+|.     .|+|+.+|+||...+=..
T Consensus       377 ----------------------FeLIl~ed~kFPr~ls~eAktLLsGLL~kdP~kRLGgGpdDakEi~~h~FF~~v~W~~  434 (516)
T KOG0690|consen  377 ----------------------FELILMEDLKFPRTLSPEAKTLLSGLLKKDPKKRLGGGPDDAKEIMRHRFFASVDWEA  434 (516)
T ss_pred             ----------------------HHHHHhhhccCCccCCHHHHHHHHHHhhcChHhhcCCCchhHHHHHhhhhhccCCHHH
Confidence                                  22334455668889999999999999999999997     589999999999886555


Q ss_pred             ccccccCCceeecc
Q 013220          423 DETKNKSNVEKVDV  436 (447)
Q Consensus       423 ~~~~~~~~~~~~~~  436 (447)
                      ...+...-.=|++|
T Consensus       435 ~~~Kki~PPfKPqV  448 (516)
T KOG0690|consen  435 TYRKKIEPPFKPQV  448 (516)
T ss_pred             HHHhccCCCCCCCc
Confidence            55444444444443

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=100.00  E-value=2.4e-37  Score=294.83  Aligned_cols=250  Identities=30%  Similarity=0.461  Sum_probs=202.8

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      ++|++.+.||+|+||.||+|++..++..|++|.+..... .+.+.+|+++++.+      +|+||+++++.+...    .
T Consensus         3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~e~~~~~~l------~~~~i~~~~~~~~~~----~   71 (256)
T cd06612           3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED-LQEIIKEISILKQC------DSPYIVKYYGSYFKN----T   71 (256)
T ss_pred             ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH-HHHHHHHHHHHHhC------CCCcEeeeeeeeecC----C
Confidence            679999999999999999999988899999998876654 67899999999999      889999999988753    7


Q ss_pred             eEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          116 HLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       116 ~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      ..|++|||+ +++|.+.+... ...+++..+..++.|++.||+|||+. +|+|+|++|+||++                 
T Consensus        72 ~~~l~~e~~~~~~L~~~l~~~-~~~l~~~~~~~~~~~l~~~l~~lh~~-~i~H~dl~~~ni~~-----------------  132 (256)
T cd06612          72 DLWIVMEYCGAGSVSDIMKIT-NKTLTEEEIAAILYQTLKGLEYLHSN-KKIHRDIKAGNILL-----------------  132 (256)
T ss_pred             cEEEEEecCCCCcHHHHHHhC-ccCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCcceEEE-----------------
Confidence            899999999 77888887542 24589999999999999999999996 99999999999999                 


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc---c
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF---A  271 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~---~  271 (447)
                                                                             +....++|+|||.+.......   .
T Consensus       133 -------------------------------------------------------~~~~~~~l~dfg~~~~~~~~~~~~~  157 (256)
T cd06612         133 -------------------------------------------------------NEEGQAKLADFGVSGQLTDTMAKRN  157 (256)
T ss_pred             -------------------------------------------------------CCCCcEEEcccccchhcccCccccc
Confidence                                                                   335679999999987654332   2


Q ss_pred             cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccc
Q 013220          272 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  351 (447)
Q Consensus       272 ~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  351 (447)
                      ...++..|+|||++.+..++.++|||||||++|+|++|+.||...+..         ..+.......+            
T Consensus       158 ~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~---------~~~~~~~~~~~------------  216 (256)
T cd06612         158 TVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPM---------RAIFMIPNKPP------------  216 (256)
T ss_pred             cccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchh---------hhhhhhccCCC------------
Confidence            235788999999999888999999999999999999999999754211         00100000000            


Q ss_pred             hhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          352 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                                              .....+...+..+.+||.+||+.||++|||++|+|.||||
T Consensus       217 ------------------------~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~il~~~~~  256 (256)
T cd06612         217 ------------------------PTLSDPEKWSPEFNDFVKKCLVKDPEERPSAIQLLQHPFI  256 (256)
T ss_pred             ------------------------CCCCchhhcCHHHHHHHHHHHhcChhhCcCHHHHhcCCCC
Confidence                                    0001122345688999999999999999999999999997

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=100.00  E-value=4.5e-37  Score=297.96  Aligned_cols=277  Identities=29%  Similarity=0.475  Sum_probs=207.6

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      +|++.++||.|++|.||+|++..++..||+|.++...  .....+.+|+++++.+      +|+||+++++.+...    
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~~----   70 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKEL------KHENIVRLHDVIHTE----   70 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhh------cCCCEeeeeeeEeeC----
Confidence            5899999999999999999999999999999876542  2245677899999999      789999999998854    


Q ss_pred             ceEEEEEecccccHHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFLGDSLLRLIKYSR-YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~~~~L~~~~~~~~-~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ...++||||+.+++.+++.... ...+++..+..++.|++.||+|||+. ||+|+||||+||++                
T Consensus        71 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~i~h~dl~p~ni~~----------------  133 (284)
T cd07836          71 NKLMLVFEYMDKDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHEN-RVLHRDLKPQNLLI----------------  133 (284)
T ss_pred             CcEEEEEecCCccHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHC-CeeeCCCCHHHEEE----------------
Confidence            6789999999778888775432 23589999999999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---c
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---F  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~  270 (447)
                                                                              +....++|+|||.+......   .
T Consensus       134 --------------------------------------------------------~~~~~~~l~d~g~~~~~~~~~~~~  157 (284)
T cd07836         134 --------------------------------------------------------NKRGELKLADFGLARAFGIPVNTF  157 (284)
T ss_pred             --------------------------------------------------------CCCCcEEEeecchhhhhcCCcccc
Confidence                                                                    33567999999998644322   2


Q ss_pred             ccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 AEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      ....++..|+|||.+.+. .++.++|+|||||++|+|++|..||...+      .......+.+..+.............
T Consensus       158 ~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (284)
T cd07836         158 SNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTN------NEDQLLKIFRIMGTPTESTWPGISQL  231 (284)
T ss_pred             ccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC------cHHHHHHHHHHhCCCChhhHHHHhcC
Confidence            234568899999998764 46899999999999999999999997653      34445555554444433221111111


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      ..+......          ......   ..+....+..+.++|.+||+.||++|||++|+++||||
T Consensus       232 ~~~~~~~~~----------~~~~~~---~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~~~~f  284 (284)
T cd07836         232 PEYKPTFPR----------YPPQDL---QQLFPHADPLGIDLLHRLLQLNPELRISAHDALQHPWF  284 (284)
T ss_pred             chhcccccC----------CChHHH---HHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhcCCCC
Confidence            111000000          000000   00112346688999999999999999999999999998

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=100.00  E-value=3.6e-37  Score=299.22  Aligned_cols=257  Identities=28%  Similarity=0.411  Sum_probs=200.1

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC-CCc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG-PNG  114 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~-~~~  114 (447)
                      ++|++.+.||+|+||.||+|.+..++..+|+|++.........+..|+.+++.+.     +|+||+++++++.... .++
T Consensus        18 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~e~~~l~~l~-----~h~~i~~~~~~~~~~~~~~~   92 (286)
T cd06638          18 DTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYNILKALS-----DHPNVVKFYGMYYKKDVKNG   92 (286)
T ss_pred             cceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccccchHHHHHHHHHHHHHHh-----cCCCeeeeeeeeeecccCCC
Confidence            7899999999999999999999999999999987765444466788999999885     6899999999875432 245


Q ss_pred             ceEEEEEecc-cccHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~--~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                      ...++||||+ +++|.+++...  ....+++..+..++.|++.||.|||+. +|+|||+||+||++.             
T Consensus        93 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dlkp~nili~-------------  158 (286)
T cd06638          93 DQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVN-KTIHRDVKGNNILLT-------------  158 (286)
T ss_pred             CeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhC-CccccCCCHHhEEEC-------------
Confidence            6899999999 88898876532  224578889999999999999999996 999999999999993             


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                 ....++|+|||++......  
T Consensus       159 -----------------------------------------------------------~~~~~kl~dfg~~~~~~~~~~  179 (286)
T cd06638         159 -----------------------------------------------------------TEGGVKLVDFGVSAQLTSTRL  179 (286)
T ss_pred             -----------------------------------------------------------CCCCEEEccCCceeecccCCC
Confidence                                                                       3456999999998654432  


Q ss_pred             -cccCCCCCCccChHHhhc-----CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhh
Q 013220          270 -FAEEIQTRQYRAPEVILR-----AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  343 (447)
Q Consensus       270 -~~~~~gt~~y~aPE~l~~-----~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  343 (447)
                       .....|+..|+|||.+..     ..++.++|+|||||++|+|++|..||.....         ...+.......+.   
T Consensus       180 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~---------~~~~~~~~~~~~~---  247 (286)
T cd06638         180 RRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLHP---------MRALFKIPRNPPP---  247 (286)
T ss_pred             ccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCch---------hHHHhhccccCCC---
Confidence             223468899999999853     3478899999999999999999999965421         1111111000000   


Q ss_pred             hCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          344 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                                                       ....+...+..+.+||.+||+.||++|||+.|+|+|+||
T Consensus       248 ---------------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~~~~  286 (286)
T cd06638         248 ---------------------------------TLHQPELWSNEFNDFIRKCLTKDYEKRPTVSDLLQHVFI  286 (286)
T ss_pred             ---------------------------------cccCCCCcCHHHHHHHHHHccCCcccCCCHHHHhhcccC
Confidence                                             000112234578899999999999999999999999997

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=100.00  E-value=4.9e-37  Score=293.24  Aligned_cols=249  Identities=22%  Similarity=0.373  Sum_probs=201.4

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      +|++.++||+|+||.||++++..+++.||+|.+...   ......+.+|+++++.+      +|+||+++++.+..    
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~----   70 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNM------KHPNIVQYQESFEE----   70 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhC------CCCCeeeeEeeecC----
Confidence            599999999999999999999999999999987643   23345788899999999      78999999998874    


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      ..+.++||||+ +++|.+.+.......+++..+..++.|++.||+|||++ |++|+||+|+||++.              
T Consensus        71 ~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~-~i~h~~l~~~nil~~--------------  135 (256)
T cd08218          71 NGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDR-KILHRDIKSQNIFLT--------------  135 (256)
T ss_pred             CCeEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC-CEecCCCCHHHEEEc--------------
Confidence            36899999999 88998888654434578899999999999999999996 999999999999993              


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc--
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF--  270 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~--  270 (447)
                                                                                ....++|+|||.+.......  
T Consensus       136 ----------------------------------------------------------~~~~~~l~d~~~~~~~~~~~~~  157 (256)
T cd08218         136 ----------------------------------------------------------KDGTIKLGDFGIARVLNSTVEL  157 (256)
T ss_pred             ----------------------------------------------------------CCCCEEEeeccceeecCcchhh
Confidence                                                                      34569999999986543321  


Q ss_pred             -ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 -AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 -~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                       ....++..|+|||.+.+..++.++|+|||||++++|++|..||....      .......+  +.+..           
T Consensus       158 ~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~------~~~~~~~~--~~~~~-----------  218 (256)
T cd08218         158 ARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGN------MKNLVLKI--IRGSY-----------  218 (256)
T ss_pred             hhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCCC------HHHHHHHH--hcCCC-----------
Confidence             23457889999999988888999999999999999999999996432      11111111  00110           


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                                                  ...+...+..+.++|.+||+.+|++||++.++|+||||
T Consensus       219 ----------------------------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~vl~~~~~  256 (256)
T cd08218         219 ----------------------------PPVSSHYSYDLRNLVSQLFKRNPRDRPSVNSILEKNFI  256 (256)
T ss_pred             ----------------------------CCCcccCCHHHHHHHHHHhhCChhhCcCHHHHhhCcCC
Confidence                                        11233446689999999999999999999999999998

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=100.00  E-value=2e-37  Score=300.49  Aligned_cols=276  Identities=29%  Similarity=0.471  Sum_probs=209.4

Q ss_pred             eEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           38 YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        38 y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      |++.++||.|++|.||+|.+..++..||+|++....   .....+.+|+++++.+      +|++|+++++++..    +
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l------~~~~iv~~~~~~~~----~   70 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKEL------NHPNIVRLLDVVHS----E   70 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhc------CCCCccCHhheecc----C
Confidence            678899999999999999999899999999876543   2234677899999999      78999999999874    4


Q ss_pred             ceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          115 QHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       115 ~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      ...+++|||++++|.+.+.......+++..+..++.|++.||+|||++ +++||||+|+||++                 
T Consensus        71 ~~~~iv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~-~~~H~dl~p~nil~-----------------  132 (283)
T cd07835          71 NKLYLVFEFLDLDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSH-RVLHRDLKPQNLLI-----------------  132 (283)
T ss_pred             CeEEEEEeccCcCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeCCCCCHHHEEE-----------------
Confidence            789999999987888887654434589999999999999999999996 99999999999999                 


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---cc
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FA  271 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~~  271 (447)
                                                                             +....++|+|||.+......   ..
T Consensus       133 -------------------------------------------------------~~~~~~~l~df~~~~~~~~~~~~~~  157 (283)
T cd07835         133 -------------------------------------------------------DREGALKLADFGLARAFGVPVRTYT  157 (283)
T ss_pred             -------------------------------------------------------cCCCcEEEeecccccccCCCccccC
Confidence                                                                   33567999999998654322   22


Q ss_pred             cCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          272 EEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       272 ~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      ...++..|+|||.+.+. .++.++|+|||||++|+|++|..||...      ++......+.+..+......+.......
T Consensus       158 ~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (283)
T cd07835         158 HEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGD------SEIDQLFRIFRTLGTPDEDVWPGVTSLP  231 (283)
T ss_pred             ccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhCCCChHHhhhhhhch
Confidence            33568899999988764 5688999999999999999999999765      3444555566665555544322211111


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      ++.......      .....       .......+..+.++|.+||+.||++|||++|++.||||
T Consensus       232 ~~~~~~~~~------~~~~~-------~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~~~~  283 (283)
T cd07835         232 DYKPTFPKW------ARQDL-------SKVVPNLDEDGLDLLSKMLVYDPAKRISAKAALQHPYF  283 (283)
T ss_pred             hhhhhcccc------cccch-------hhhcCCCCHHHHHHHHHHhcCChhhCcCHHHHhcCCCC
Confidence            110000000      00000       01123345688999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=100.00  E-value=2.5e-37  Score=303.11  Aligned_cols=260  Identities=29%  Similarity=0.494  Sum_probs=206.3

Q ss_pred             ccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccc
Q 013220           28 RVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDH  106 (447)
Q Consensus        28 ~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~  106 (447)
                      ..|+..  ++|++.++||+|+||.||+|++..++..||+|.+.... ...+.+.+|+.+++.+      +|+||+++++.
T Consensus        13 ~~~~~~--~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~------~h~~i~~~~~~   84 (297)
T cd06656          13 SVGDPK--KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMREN------KNPNIVNYLDS   84 (297)
T ss_pred             ccCChh--hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhC------CCCCEeeEEEE
Confidence            345555  68999999999999999999999999999999876432 3345678899999988      88999999999


Q ss_pred             ccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCC
Q 013220          107 FKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK  185 (447)
Q Consensus       107 ~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~  185 (447)
                      +..    +...++||||+ +++|.+++..   ..+++..+..++.|++.||.|||+. ||+||||||+||++        
T Consensus        85 ~~~----~~~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~l~~~L~~LH~~-~i~H~dL~p~Nili--------  148 (297)
T cd06656          85 YLV----GDELWVVMEYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALDFLHSN-QVIHRDIKSDNILL--------  148 (297)
T ss_pred             Eec----CCEEEEeecccCCCCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEE--------
Confidence            875    36899999999 8889888753   3478899999999999999999996 99999999999999        


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccc
Q 013220          186 DPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR  265 (447)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~  265 (447)
                                                                                      +....++|+|||.+..
T Consensus       149 ----------------------------------------------------------------~~~~~~~l~Dfg~~~~  164 (297)
T cd06656         149 ----------------------------------------------------------------GMDGSVKLTDFGFCAQ  164 (297)
T ss_pred             ----------------------------------------------------------------CCCCCEEECcCccceE
Confidence                                                                            3356799999999865


Q ss_pred             cccc---cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh
Q 013220          266 ANKQ---FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  342 (447)
Q Consensus       266 ~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (447)
                      ....   .....+++.|+|||.+.+..++.++|+|||||++|++++|..||...+...      ....+ ...+.     
T Consensus       165 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~------~~~~~-~~~~~-----  232 (297)
T cd06656         165 ITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLR------ALYLI-ATNGT-----  232 (297)
T ss_pred             ccCCccCcCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcch------heeee-ccCCC-----
Confidence            4322   223467889999999998888999999999999999999999996543110      00000 00000     


Q ss_pred             hhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccC
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~  420 (447)
                                                       .....+...+..+.+|+.+||+.||++|||++++|.||||.....
T Consensus       233 ---------------------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~~~~~~  277 (297)
T cd06656         233 ---------------------------------PELQNPERLSAVFRDFLNRCLEMDVDRRGSAKELLQHPFLKLAKP  277 (297)
T ss_pred             ---------------------------------CCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcCchhccccc
Confidence                                             000122344567889999999999999999999999999986543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=100.00  E-value=2.6e-37  Score=301.67  Aligned_cols=281  Identities=29%  Similarity=0.458  Sum_probs=211.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH---hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ---FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~---~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.+.||.|+||.||+|.+..+++.+++|.++....   ....+.+|+++++.+      .|+||+++++++...  
T Consensus         5 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l------~h~ni~~~~~~~~~~--   76 (293)
T cd07843           5 DEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKL------QHPNIVTVKEVVVGS--   76 (293)
T ss_pred             hhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhc------CCCCEEEEEEEEEec--
Confidence            579999999999999999999998999999998764432   223467899999999      789999999987653  


Q ss_pred             CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          113 NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       113 ~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      +....|+||||++++|.+++.... ..+++..++.++.|++.||+|||++ ||+|+||||+||++               
T Consensus        77 ~~~~~~lv~e~~~~~L~~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~-~i~H~dl~p~nili---------------  139 (293)
T cd07843          77 NLDKIYMVMEYVEHDLKSLMETMK-QPFLQSEVKCLMLQLLSGVAHLHDN-WILHRDLKTSNLLL---------------  139 (293)
T ss_pred             CCCcEEEEehhcCcCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHC-CeeeccCCHHHEEE---------------
Confidence            346899999999778888876533 3589999999999999999999996 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---  269 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---  269 (447)
                                                                               +..+.++|+|||.+......   
T Consensus       140 ---------------------------------------------------------~~~~~~~l~d~g~~~~~~~~~~~  162 (293)
T cd07843         140 ---------------------------------------------------------NNRGILKICDFGLAREYGSPLKP  162 (293)
T ss_pred             ---------------------------------------------------------CCCCcEEEeecCceeeccCCccc
Confidence                                                                     33567999999998765443   


Q ss_pred             cccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          270 FAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      .....+++.|+|||.+.+. .++.++|+|||||++|+|++|..||...+      .......+....+............
T Consensus       163 ~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  236 (293)
T cd07843         163 YTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKS------EIDQLNKIFKLLGTPTEKIWPGFSE  236 (293)
T ss_pred             cccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHHHhCCCchHHHHHhhc
Confidence            2234578899999998765 46899999999999999999999997653      4555566666666554432211110


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChh-hHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSET-DAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      .. ....    .......+..+      ...++.. +++.+.+||.+||+.||++|||++|+|.||||
T Consensus       237 ~~-~~~~----~~~~~~~~~~~------~~~~~~~~~~~~~~~li~~~l~~~p~~R~t~~ell~~~~f  293 (293)
T cd07843         237 LP-GAKK----KTFTKYPYNQL------RKKFPALSLSDNGFDLLNRLLTYDPAKRISAEDALKHPYF  293 (293)
T ss_pred             cc-hhcc----cccccccchhh------hccccccCCChHHHHHHHHHhccCccccCCHHHHhcCCCC
Confidence            00 0000    00000000000      1112222 46788999999999999999999999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=100.00  E-value=2.6e-37  Score=299.45  Aligned_cols=259  Identities=24%  Similarity=0.369  Sum_probs=198.1

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      ++|++.+.||+|+||.||+|.+..+++.||+|.++...  .....+..|+.++.+..     +|+||+++++.+...   
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~-----~~~~iv~~~~~~~~~---   72 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSV-----DCPYTVTFYGALFRE---   72 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHc-----CCCCeeeeeEEEecC---
Confidence            36999999999999999999999999999999876542  22334555666543332     899999999988743   


Q ss_pred             cceEEEEEecccccHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          114 GQHLCMVLEFLGDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       114 ~~~~~lvmE~~~~~L~~~~~~~--~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                       ...|++|||++++|.+++...  ....+++..+..++.|++.||+|||++.+++||||||+||++              
T Consensus        73 -~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~i~h~dlkp~nil~--------------  137 (283)
T cd06617          73 -GDVWICMEVMDTSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVLI--------------  137 (283)
T ss_pred             -CcEEEEhhhhcccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEE--------------
Confidence             579999999988888777542  224589999999999999999999985599999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                +....++|+|||.+......  
T Consensus       138 ----------------------------------------------------------~~~~~~kl~dfg~~~~~~~~~~  159 (283)
T cd06617         138 ----------------------------------------------------------NRNGQVKLCDFGISGYLVDSVA  159 (283)
T ss_pred             ----------------------------------------------------------CCCCCEEEeecccccccccccc
Confidence                                                                      34567999999998654332  


Q ss_pred             cccCCCCCCccChHHhhc----CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          270 FAEEIQTRQYRAPEVILR----AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~----~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                      .....++..|+|||.+.+    ..++.++|+|||||++|+|++|..||....     .....+.....   ...      
T Consensus       160 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~-----~~~~~~~~~~~---~~~------  225 (283)
T cd06617         160 KTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWK-----TPFQQLKQVVE---EPS------  225 (283)
T ss_pred             cccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCccc-----cCHHHHHHHHh---cCC------
Confidence            223467889999999865    346889999999999999999999996431     11111111110   000      


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCC-hhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFS-ETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                                                      ..++ ...+.++.+||.+||..+|++|||++++++||||......
T Consensus       226 --------------------------------~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~~~  270 (283)
T cd06617         226 --------------------------------PQLPAEKFSPEFQDFVNKCLKKNYKERPNYPELLQHPFFELHLSK  270 (283)
T ss_pred             --------------------------------CCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcCchhhhcccc
Confidence                                            0011 1246689999999999999999999999999999976543

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=4.7e-38  Score=317.69  Aligned_cols=253  Identities=26%  Similarity=0.432  Sum_probs=220.1

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      +.|.+.+.||+|.|+.|.+|++..++..||||++.+..   ...+.+.+|+++++.+      +|||||+++.+....  
T Consensus        56 g~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l------~HPnIvkl~~v~~t~--  127 (596)
T KOG0586|consen   56 GLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSL------NHPNIVKLFSVIETE--  127 (596)
T ss_pred             cceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhc------CCcceeeeeeeeeec--
Confidence            67999999999999999999999999999999988654   3445689999999999      899999999998854  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                        ..+|+||||+ ++.+++.+....  .+.+..++.++.|++.|++|||++ +|||||||.+|+++              
T Consensus       128 --~~lylV~eya~~ge~~~yl~~~g--r~~e~~ar~~F~q~vsaveYcH~k-~ivHrdLk~eNilL--------------  188 (596)
T KOG0586|consen  128 --ATLYLVMEYASGGELFDYLVKHG--RMKEKEARAKFRQIVSAVEYCHSK-NIVHRDLKAENILL--------------  188 (596)
T ss_pred             --ceeEEEEEeccCchhHHHHHhcc--cchhhhhhhhhHHHHHHHHHHhhc-ceeccccchhhccc--------------
Confidence              7899999999 999998887543  377799999999999999999998 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc--cc
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQ  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~--~~  269 (447)
                                                                                +.++++||+|||++...+  ..
T Consensus       189 ----------------------------------------------------------~~~mnikIaDfgfS~~~~~~~~  210 (596)
T KOG0586|consen  189 ----------------------------------------------------------DENMNIKIADFGFSTFFDYGLM  210 (596)
T ss_pred             ----------------------------------------------------------ccccceeeeccccceeeccccc
Confidence                                                                      567889999999997554  44


Q ss_pred             cccCCCCCCccChHHhhcCCC-CccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          270 FAEEIQTRQYRAPEVILRAGY-SFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~~-~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      ...+||++.|.|||++.+..| ++.+|+||+|+++|.|+.|.+||.+..-++.                           
T Consensus       211 lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~lk~L---------------------------  263 (596)
T KOG0586|consen  211 LQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQNLKEL---------------------------  263 (596)
T ss_pred             ccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCcccccc---------------------------
Confidence            566799999999999999887 5899999999999999999999987642211                           


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                                           .+..+...++++.-++.++.++|+++|..+|.+|++.+++..|.|.-...+.
T Consensus       264 ---------------------r~rvl~gk~rIp~~ms~dce~lLrk~lvl~Pskr~~~dqim~~~W~n~~~~~  315 (596)
T KOG0586|consen  264 ---------------------RPRVLRGKYRIPFYMSCDCEDLLRKFLVLNPSKRGPCDQIMKDRWRNDLLEA  315 (596)
T ss_pred             ---------------------cchheeeeecccceeechhHHHHHHhhccCccccCCHHHhhhhcccchhhhh
Confidence                                 2334445556777778899999999999999999999999999999887655

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=100.00  E-value=4.7e-37  Score=294.43  Aligned_cols=255  Identities=30%  Similarity=0.465  Sum_probs=201.4

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      ++|++.+.||.|+||+||+|....++..+++|++....  ...+.+.+|+++++.+      .|++|+++++.+..    
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~----   70 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQC------NHPNVVKYYTSFVV----   70 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhc------CCCCEEEEEEEEee----
Confidence            36999999999999999999988889999999876432  3456788999999988      78899999998874    


Q ss_pred             cceEEEEEecc-cccHHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRY-KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~-~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                      +...++|||++ +++|.+.+..... ..+++..+..++.|++.||+|||+. ||+|+||+|+||++.             
T Consensus        71 ~~~~~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~-~i~h~~l~p~ni~~~-------------  136 (267)
T cd06610          71 GDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSN-GQIHRDIKAGNILLG-------------  136 (267)
T ss_pred             CCEEEEEEeccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHhEEEc-------------
Confidence            46899999999 8889888865432 4588999999999999999999996 999999999999993             


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                 ....++|+|||++......  
T Consensus       137 -----------------------------------------------------------~~~~~~l~df~~~~~~~~~~~  157 (267)
T cd06610         137 -----------------------------------------------------------EDGSVKIADFGVSASLADGGD  157 (267)
T ss_pred             -----------------------------------------------------------CCCCEEEcccchHHHhccCcc
Confidence                                                                       3567999999998654322  


Q ss_pred             -----cccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhh
Q 013220          270 -----FAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  343 (447)
Q Consensus       270 -----~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  343 (447)
                           .....++..|+|||++... .++.++|+|||||++|+|++|..||...+..         ....+.....+..+ 
T Consensus       158 ~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~---------~~~~~~~~~~~~~~-  227 (267)
T cd06610         158 RTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPPM---------KVLMLTLQNDPPSL-  227 (267)
T ss_pred             ccccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccChh---------hhHHHHhcCCCCCc-
Confidence                 1223688899999999876 6889999999999999999999999654311         11111111111000 


Q ss_pred             hCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          344 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                                                 .     ........+..+.+|+.+||+.||++|||++++++||||
T Consensus       228 ---------------------------~-----~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~~p~~  267 (267)
T cd06610         228 ---------------------------E-----TGADYKKYSKSFRKMISLCLQKDPSKRPTAEELLKHKFF  267 (267)
T ss_pred             ---------------------------C-----CccccccccHHHHHHHHHHcCCChhhCcCHHHHhhCCCC
Confidence                                       0     000012446788999999999999999999999999998

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.1e-36  Score=305.17  Aligned_cols=285  Identities=29%  Similarity=0.467  Sum_probs=216.9

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      .++|.+.+.||+|+||.||+|.+..+++.||+|.++..   ....+.+.+|+++++.+      +|+||+++++++....
T Consensus        16 ~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l------~h~~iv~~~~~~~~~~   89 (345)
T cd07877          16 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHM------KHENVIGLLDVFTPAR   89 (345)
T ss_pred             cCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHc------CCCcccceeeeeeecc
Confidence            37899999999999999999999999999999987643   22345677899999999      7899999999876432


Q ss_pred             C--CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          112 P--NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       112 ~--~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                      .  .....|+++++++++|.+.+..   ..+++..+..++.|++.||+|||+. ||+||||||+||++            
T Consensus        90 ~~~~~~~~~lv~~~~~~~L~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~-~ivH~dlkp~NIll------------  153 (345)
T cd07877          90 SLEEFNDVYLVTHLMGADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSA-DIIHRDLKPSNLAV------------  153 (345)
T ss_pred             cccccccEEEEehhcccCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC-CeeecCCChHHEEE------------
Confidence            1  2245889999998899877653   3488999999999999999999996 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                  +..+.++|+|||++......
T Consensus       154 ------------------------------------------------------------~~~~~~kl~dfg~~~~~~~~  173 (345)
T cd07877         154 ------------------------------------------------------------NEDCELKILDFGLARHTDDE  173 (345)
T ss_pred             ------------------------------------------------------------cCCCCEEEeccccccccccc
Confidence                                                                        33567999999999766555


Q ss_pred             cccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          270 FAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      .....++..|+|||.+.+ ..++.++|+|||||++|+|++|..||...      ........+.+..+..+..+......
T Consensus       174 ~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (345)
T cd07877         174 MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT------DHIDQLKLILRLVGTPGAELLKKISS  247 (345)
T ss_pred             ccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhCCCCHHHHhhccc
Confidence            555678899999999876 46789999999999999999999999765      24455666667677766655322221


Q ss_pred             cc--chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccC
Q 013220          349 SK--DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       349 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~  420 (447)
                      ..  .+..      ............       .....+..+.+||.+||+.||++|||+.++|+||||+....
T Consensus       248 ~~~~~~~~------~~~~~~~~~~~~-------~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h~~f~~~~~  308 (345)
T cd07877         248 ESARNYIQ------SLTQMPKMNFAN-------VFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHD  308 (345)
T ss_pred             HhHHHHHH------HhcccCCcchhh-------hcCCCCHHHHHHHHHHcCCChhhcCCHHHHhcChhhhhcCC
Confidence            10  0000      000000000000       00123567899999999999999999999999999997544

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=7.5e-38  Score=311.54  Aligned_cols=256  Identities=26%  Similarity=0.384  Sum_probs=196.2

Q ss_pred             ccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEec---hhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           33 FNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQK---SAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        33 ~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~---~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      ++|..|++.++||.||.+.||++... ....||+|...   .+....+.+.+|+++|..|.     +|.+||++|++=. 
T Consensus       358 Vkg~~Yeilk~iG~GGSSkV~kV~~s-~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLk-----g~~~IIqL~DYEv-  430 (677)
T KOG0596|consen  358 VKGREYEILKQIGSGGSSKVFKVLNS-DKQIYALKKVVLLEADNQTLDGYRNEIALLNKLK-----GHDKIIQLYDYEV-  430 (677)
T ss_pred             ECcchhhHHHhhcCCCcceeeeeecC-CCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhc-----CCceEEEEeeeec-
Confidence            34678999999999999999999754 34566666332   34566788999999999998     7889999999866 


Q ss_pred             cCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          110 AGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                         +..++||||||=..+|...+.... ..++.-.++.+..||+.|+.++|++ ||||.||||.|+|+.           
T Consensus       431 ---~d~~lYmvmE~Gd~DL~kiL~k~~-~~~~~~~lk~ywkqML~aV~~IH~~-gIVHSDLKPANFLlV-----------  494 (677)
T KOG0596|consen  431 ---TDGYLYMVMECGDIDLNKILKKKK-SIDPDWFLKFYWKQMLLAVKTIHQH-GIVHSDLKPANFLLV-----------  494 (677)
T ss_pred             ---cCceEEEEeecccccHHHHHHhcc-CCCchHHHHHHHHHHHHHHHHHHHh-ceeecCCCcccEEEE-----------
Confidence               357999999987788888886543 2344348899999999999999997 999999999999983           


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                    .+.+||+|||+|..+...
T Consensus       495 --------------------------------------------------------------kG~LKLIDFGIA~aI~~D  512 (677)
T KOG0596|consen  495 --------------------------------------------------------------KGRLKLIDFGIANAIQPD  512 (677)
T ss_pred             --------------------------------------------------------------eeeEEeeeechhcccCcc
Confidence                                                                          478999999999755432


Q ss_pred             -----cccCCCCCCccChHHhhcC-----------CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHH
Q 013220          270 -----FAEEIQTRQYRAPEVILRA-----------GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMME  333 (447)
Q Consensus       270 -----~~~~~gt~~y~aPE~l~~~-----------~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~  333 (447)
                           ....+||+-|||||.+...           ..+.++||||||||+|+|+.|+.||....        -..+.+..
T Consensus       513 TTsI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~--------n~~aKl~a  584 (677)
T KOG0596|consen  513 TTSIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQII--------NQIAKLHA  584 (677)
T ss_pred             ccceeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHH--------HHHHHHHh
Confidence                 2234899999999998521           25689999999999999999999995321        12222222


Q ss_pred             HhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCc
Q 013220          334 LIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP  413 (447)
Q Consensus       334 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp  413 (447)
                      + -.+..++        + |.                        .++.  ..++.++++.||.+||.+|||+.++|+||
T Consensus       585 I-~~P~~~I--------e-fp------------------------~~~~--~~~li~~mK~CL~rdPkkR~si~eLLqhp  628 (677)
T KOG0596|consen  585 I-TDPNHEI--------E-FP------------------------DIPE--NDELIDVMKCCLARDPKKRWSIPELLQHP  628 (677)
T ss_pred             h-cCCCccc--------c-cc------------------------CCCC--chHHHHHHHHHHhcCcccCCCcHHHhcCc
Confidence            2 1111111        0 00                        0111  22488999999999999999999999999


Q ss_pred             cccc
Q 013220          414 WLSL  417 (447)
Q Consensus       414 ~f~~  417 (447)
                      |++.
T Consensus       629 Fl~~  632 (677)
T KOG0596|consen  629 FLQI  632 (677)
T ss_pred             cccc
Confidence            9986

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=7.1e-37  Score=306.02  Aligned_cols=286  Identities=30%  Similarity=0.486  Sum_probs=215.0

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|.+.+.||+|+||.||+|.+..+++.||+|.++..   ......+.+|+++++.+      .|+||+++++++.....
T Consensus        15 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l------~h~niv~~~~~~~~~~~   88 (342)
T cd07879          15 ERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHM------QHENVIGLLDVFTSAVS   88 (342)
T ss_pred             cceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhc------CCCCccchhheeccccc
Confidence            6899999999999999999999989999999987643   22334677899999998      78999999998875422


Q ss_pred             --CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          113 --NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       113 --~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                        .....++||||+..++.....    ..+++..+..++.|++.||+|||+. ||+||||||+||++             
T Consensus        89 ~~~~~~~~lv~e~~~~~l~~~~~----~~~~~~~~~~~~~qi~~aL~~LH~~-~i~H~dlkp~NIll-------------  150 (342)
T cd07879          89 GDEFQDFYLVMPYMQTDLQKIMG----HPLSEDKVQYLVYQMLCGLKYIHSA-GIIHRDLKPGNLAV-------------  150 (342)
T ss_pred             CCCCceEEEEecccccCHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEE-------------
Confidence              224579999999777765542    3488999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF  270 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~  270 (447)
                                                                                 +..+.++|+|||++.......
T Consensus       151 -----------------------------------------------------------~~~~~~kL~dfg~~~~~~~~~  171 (342)
T cd07879         151 -----------------------------------------------------------NEDCELKILDFGLARHADAEM  171 (342)
T ss_pred             -----------------------------------------------------------CCCCCEEEeeCCCCcCCCCCC
Confidence                                                                       335679999999987665544


Q ss_pred             ccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 AEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      ....++..|+|||.+.+ ..++.++|+|||||++|+|++|+.||...      .....+..+....|..+..+.......
T Consensus       172 ~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (342)
T cd07879         172 TGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGK------DYLDQLTQILKVTGVPGPEFVQKLEDK  245 (342)
T ss_pred             CCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHhcCCCCHHHHHHhccc
Confidence            55677899999999876 45789999999999999999999999765      245566666666666655543222111


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                      .       ..................    .....+..+.+||.+||+.||++|||++++|.||||......
T Consensus       246 ~-------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~~~~~  306 (342)
T cd07879         246 A-------AKSYIKSLPKYPRKDFST----LFPKASPQAVDLLEKMLELDVDKRLTATEALEHPYFDSFRDA  306 (342)
T ss_pred             c-------hHHHHhhcCCcccchHHH----HhcCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcchhhcccc
Confidence            0       000000000000000000    011235578899999999999999999999999999987643

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=100.00  E-value=6.7e-37  Score=304.73  Aligned_cols=288  Identities=28%  Similarity=0.425  Sum_probs=217.0

Q ss_pred             ceEEEEeecccCceEEEEEEeCCC--CeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRT--SSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~--~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      +|++.+.||+|+||.||+|++..+  +..||+|.+...   ....+.+.+|+++++.+.     +|+||+++++.+....
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~~iv~~~~~~~~~~   75 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFR-----GHKNITCLYDMDIVFP   75 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhc-----CCCChheeeeeeeecc
Confidence            589999999999999999999877  899999987642   223456788999999884     6899999998765432


Q ss_pred             CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          112 PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       112 ~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                      .....++++|++++++|.+.+...  ..+++..++.++.||+.||+|||++ ||+||||||+||++              
T Consensus        76 ~~~~~~~~~~e~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-givH~dlkp~Nili--------------  138 (332)
T cd07857          76 GNFNELYLYEELMEADLHQIIRSG--QPLTDAHFQSFIYQILCGLKYIHSA-NVLHRDLKPGNLLV--------------  138 (332)
T ss_pred             ccCCcEEEEEecccCCHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCHHHeEE--------------
Confidence            334578999999988888887643  4589999999999999999999996 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                +....++|+|||.+......  
T Consensus       139 ----------------------------------------------------------~~~~~~kl~Dfg~a~~~~~~~~  160 (332)
T cd07857         139 ----------------------------------------------------------NADCELKICDFGLARGFSENPG  160 (332)
T ss_pred             ----------------------------------------------------------cCCCCEEeCcCCCceecccccc
Confidence                                                                      33567999999998654321  


Q ss_pred             -----cccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhh
Q 013220          270 -----FAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  343 (447)
Q Consensus       270 -----~~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  343 (447)
                           .....|+..|+|||.+.+ ..++.++|||||||++|+|++|..||...      .....+..+...+|..+....
T Consensus       161 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~  234 (332)
T cd07857         161 ENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGK------DYVDQLNQILQVLGTPDEETL  234 (332)
T ss_pred             cccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCC------CHHHHHHHHHHHhCCCCHHHH
Confidence                 223468899999998876 46889999999999999999999999765      356677888888887776543


Q ss_pred             hCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          344 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                      .........       ...............    ......+..+.+||.+||+.||++|||++|++.||||+..+..
T Consensus       235 ~~~~~~~~~-------~~~~~~~~~~~~~~~----~~~~~~~~~~~~li~~~l~~~P~~R~t~~~ll~~~~~~~~~~~  301 (332)
T cd07857         235 SRIGSPKAQ-------NYIRSLPNIPKKPFE----SIFPNANPLALDLLEKLLAFDPTKRISVEEALEHPYLAIWHDP  301 (332)
T ss_pred             HhhhhhhHH-------HHHHhccccCCcchH----hhCCCCCHHHHHHHHHHccCCcccCCCHHHHhcChhhhhhcCc
Confidence            222111000       000000000000000    0112235688999999999999999999999999999877543

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=3.5e-37  Score=299.07  Aligned_cols=257  Identities=26%  Similarity=0.438  Sum_probs=201.0

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh-HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA-AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      +-|++.++||.|+||.||+|.+..++..+++|.+... ......+.+|+++++.+      .|+||+++++.+..    +
T Consensus         5 ~~~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l------~h~~ii~~~~~~~~----~   74 (282)
T cd06643           5 EFWEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASC------DHPNIVKLLDAFYY----E   74 (282)
T ss_pred             HHHHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHC------CCCCeeeEEEEEee----C
Confidence            3478889999999999999999999999999987643 33456788899999998      88999999998875    3


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ...++||||+ ++++...+... ...+++..+..++.|++.||+|||+. ||+||||||+||++                
T Consensus        75 ~~~~~v~e~~~~~~l~~~~~~~-~~~l~~~~~~~~~~qi~~~L~~LH~~-~i~H~dlkp~nili----------------  136 (282)
T cd06643          75 NNLWILIEFCAGGAVDAVMLEL-ERPLTEPQIRVVCKQTLEALNYLHEN-KIIHRDLKAGNILF----------------  136 (282)
T ss_pred             CEEEEEEEecCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHC-CeeecCCCcccEEE----------------
Confidence            6899999999 77777766432 24589999999999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---c
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---F  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~  270 (447)
                                                                              +....++|+|||++......   .
T Consensus       137 --------------------------------------------------------~~~~~~kl~dfg~~~~~~~~~~~~  160 (282)
T cd06643         137 --------------------------------------------------------TLDGDIKLADFGVSAKNTRTIQRR  160 (282)
T ss_pred             --------------------------------------------------------ccCCCEEEcccccccccccccccc
Confidence                                                                    33567999999998644322   2


Q ss_pred             ccCCCCCCccChHHhh-----cCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          271 AEEIQTRQYRAPEVIL-----RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~-----~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                      ....++..|+|||++.     +..++.++|+|||||++|+|++|..||...+      .   ...+.+.....+.     
T Consensus       161 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~------~---~~~~~~~~~~~~~-----  226 (282)
T cd06643         161 DSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELN------P---MRVLLKIAKSEPP-----  226 (282)
T ss_pred             ccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccccC------H---HHHHHHHhhcCCC-----
Confidence            2346889999999984     3457789999999999999999999996542      1   1111111111000     


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                                                     ....+...+..+.+||.+||+.||++|||++++++||||+.....
T Consensus       227 -------------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~~~  271 (282)
T cd06643         227 -------------------------------TLAQPSRWSSEFKDFLKKCLEKNVDARWTTTQLLQHPFVTVNSNK  271 (282)
T ss_pred             -------------------------------CCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcCCCEeccCCC
Confidence                                           001122345688999999999999999999999999999976543

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.7e-37  Score=300.78  Aligned_cols=254  Identities=28%  Similarity=0.458  Sum_probs=201.8

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      ++|++.++||.|+||+||+|++..++..+|+|++.... ...+.+..|+++++.+      +|+||+++++.+..    +
T Consensus         5 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~----~   74 (280)
T cd06611           5 DIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSEC------KHPNIVGLYEAYFY----E   74 (280)
T ss_pred             hHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhC------CCCceeEEEEEEec----C
Confidence            67999999999999999999998899999999876443 3345788899999999      78999999999874    3


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ...++||||+ +++|.+++.... ..+++..++.++.|++.||+|||++ ||+|+||||+||++                
T Consensus        75 ~~~~lv~e~~~~~~L~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lh~~-~i~h~dl~p~nili----------------  136 (280)
T cd06611          75 NKLWILIEFCDGGALDSIMLELE-RGLTEPQIRYVCRQMLEALNFLHSH-KVIHRDLKAGNILL----------------  136 (280)
T ss_pred             CeEEEEeeccCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCChhhEEE----------------
Confidence            6899999999 778888775432 4589999999999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---c
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---F  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~  270 (447)
                                                                              +.+..++|+|||.+......   .
T Consensus       137 --------------------------------------------------------~~~~~~~l~d~g~~~~~~~~~~~~  160 (280)
T cd06611         137 --------------------------------------------------------TLDGDVKLADFGVSAKNKSTLQKR  160 (280)
T ss_pred             --------------------------------------------------------CCCCCEEEccCccchhhccccccc
Confidence                                                                    34567999999988644322   2


Q ss_pred             ccCCCCCCccChHHhhc-----CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          271 AEEIQTRQYRAPEVILR-----AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~-----~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                      ....++..|+|||.+..     .+++.++|+|||||++|+|++|..||...+         ....+..+....+.     
T Consensus       161 ~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~---------~~~~~~~~~~~~~~-----  226 (280)
T cd06611         161 DTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELN---------PMRVLLKILKSEPP-----  226 (280)
T ss_pred             ceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCC---------HHHHHHHHhcCCCC-----
Confidence            23468899999999853     346789999999999999999999996542         11111111110000     


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                                                     ....+...+.++.+||.+||+.+|.+||++.++|+||||+..
T Consensus       227 -------------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~~~~  268 (280)
T cd06611         227 -------------------------------TLDQPSKWSSSFNDFLKSCLVKDPDDRPTAAELLKHPFVSDQ  268 (280)
T ss_pred             -------------------------------CcCCcccCCHHHHHHHHHHhccChhhCcCHHHHhcChhhccc
Confidence                                           001122345678899999999999999999999999999865

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=1.2e-36  Score=296.42  Aligned_cols=267  Identities=26%  Similarity=0.402  Sum_probs=204.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      ++|...++||.|++|.||+|.+..+++.||+|.+....  .....+.+|+++++.+      +|+||+++++.+...  .
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~~--~   72 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSC------KSPYIVKYYGAFLDE--S   72 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhC------CCCCeeeeeeEEEcc--C
Confidence            46999999999999999999999999999999876432  3456788999999998      889999999988654  3


Q ss_pred             cceEEEEEecc-cccHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~--~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                      ...+++||||+ +++|.+++...  ....+++..+..++.|++.||+|||+. |++|+||+|+||++.            
T Consensus        73 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~-~i~H~dl~~~nil~~------------  139 (287)
T cd06621          73 SSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSR-KIIHRDIKPSNILLT------------  139 (287)
T ss_pred             CCeEEEEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEEe------------
Confidence            45789999999 78888776432  223478889999999999999999996 999999999999993            


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF  270 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~  270 (447)
                                                                                  ....++|+|||++.......
T Consensus       140 ------------------------------------------------------------~~~~~~l~dfg~~~~~~~~~  159 (287)
T cd06621         140 ------------------------------------------------------------RKGQVKLCDFGVSGELVNSL  159 (287)
T ss_pred             ------------------------------------------------------------cCCeEEEeeccccccccccc
Confidence                                                                        34569999999986543322


Q ss_pred             -ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 -AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 -~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                       ....++..|+|||.+.+..++.++|+|||||++|+|++|..||...... .   ....+....+....+..        
T Consensus       160 ~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~-~---~~~~~~~~~~~~~~~~~--------  227 (287)
T cd06621         160 AGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEP-P---LGPIELLSYIVNMPNPE--------  227 (287)
T ss_pred             cccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCC-C---CChHHHHHHHhcCCchh--------
Confidence             2345788999999998888999999999999999999999999765321 0   01111111111100000        


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                              +..........++.+.+||.+||+.+|.+|||+.|++.||||+...
T Consensus       228 ------------------------~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~eil~~~~~~~~~  273 (287)
T cd06621         228 ------------------------LKDEPGNGIKWSEEFKDFIKQCLEKDPTRRPTPWDMLEHPWIKAQM  273 (287)
T ss_pred             ------------------------hccCCCCCCchHHHHHHHHHHHcCCCcccCCCHHHHHhCccccccc
Confidence                                    0000001112356889999999999999999999999999996543

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.8e-37  Score=298.24  Aligned_cols=253  Identities=29%  Similarity=0.469  Sum_probs=204.4

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      ++|++.+.||.|++|.||+|++..++..||+|.+....  .....+.+|+++++.+      .|+||+++++.+..    
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~----   70 (274)
T cd06609           1 ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQC------RSPYITKYYGSFLK----   70 (274)
T ss_pred             ChhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHc------CCCCeeeeeEEEEE----
Confidence            47999999999999999999999999999999876542  2345678899999999      78999999998874    


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      +...++|+||+ +++|.+.+...   .+++..+..++.|++.||.|||+. +++|+||+|+||++               
T Consensus        71 ~~~~~~v~e~~~~~~L~~~~~~~---~~~~~~~~~~~~ql~~~l~~lh~~-~i~h~dl~p~ni~i---------------  131 (274)
T cd06609          71 GSKLWIIMEYCGGGSCLDLLKPG---KLDETYIAFILREVLLGLEYLHEE-GKIHRDIKAANILL---------------  131 (274)
T ss_pred             CCeEEEEEEeeCCCcHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCHHHEEE---------------
Confidence            37899999999 78898887643   589999999999999999999996 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---  269 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---  269 (447)
                                                                               +....++|+|||.+......   
T Consensus       132 ---------------------------------------------------------~~~~~~~l~d~g~~~~~~~~~~~  154 (274)
T cd06609         132 ---------------------------------------------------------SEEGDVKLADFGVSGQLTSTMSK  154 (274)
T ss_pred             ---------------------------------------------------------CCCCCEEEcccccceeecccccc
Confidence                                                                     34567999999998765433   


Q ss_pred             cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          270 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      .....++..|+|||.+.+..++.++|+|||||++|+|++|..||...+.         ......+....+          
T Consensus       155 ~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~---------~~~~~~~~~~~~----------  215 (274)
T cd06609         155 RNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHP---------MRVLFLIPKNNP----------  215 (274)
T ss_pred             cccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCch---------HHHHHHhhhcCC----------
Confidence            2344678899999999988899999999999999999999999965420         111111110000          


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChh-hHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSET-DAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                                                  +..+.. .+..+.++|.+||..||++|||++++++||||+.....
T Consensus       216 ----------------------------~~~~~~~~~~~~~~~l~~~l~~~p~~Rpt~~~il~~~~~~~~~~~  260 (274)
T cd06609         216 ----------------------------PSLEGNKFSKPFKDFVSLCLNKDPKERPSAKELLKHKFIKKAKKT  260 (274)
T ss_pred             ----------------------------CCCcccccCHHHHHHHHHHhhCChhhCcCHHHHhhChhhcCCCcc
Confidence                                        001111 45678999999999999999999999999999875533

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=100.00  E-value=5.3e-37  Score=294.71  Aligned_cols=248  Identities=25%  Similarity=0.396  Sum_probs=196.2

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh-------HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA-------AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~-------~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      +|++.+.||.|+||.||+|.+ .++..+|+|.++..       ......+.+|+++++.+      +|+||+++++++..
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~   73 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLT-NQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSL------KHVNIVQYLGTCLD   73 (265)
T ss_pred             CccccceEeccCCeEEEEEEE-cCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhc------CCCCEeeEeeEeec
Confidence            488899999999999999986 47889999976532       12235678899999999      78899999999875


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                      .    ...+++|||+ +++|.+++...  ..+++..+..++.|++.||+|||+. +|+|+||+|+||++           
T Consensus        74 ~----~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~nil~-----------  135 (265)
T cd06631          74 D----NTISIFMEFVPGGSISSILNRF--GPLPEPVFCKYTKQILDGVAYLHNN-CVVHRDIKGNNVML-----------  135 (265)
T ss_pred             C----CeEEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCcCHHhEEE-----------
Confidence            3    7899999999 88998888643  3588999999999999999999996 99999999999999           


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                   +....++|+|||.+.....
T Consensus       136 -------------------------------------------------------------~~~~~~~l~dfg~~~~~~~  154 (265)
T cd06631         136 -------------------------------------------------------------MPNGIIKLIDFGCARRLAW  154 (265)
T ss_pred             -------------------------------------------------------------CCCCeEEeccchhhHhhhh
Confidence                                                                         3356799999998864321


Q ss_pred             ---------ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCC
Q 013220          269 ---------QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMP  339 (447)
Q Consensus       269 ---------~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~  339 (447)
                               ......++..|+|||.+.+..++.++|+|||||++|+|++|..||...+      .......+....+.  
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~------~~~~~~~~~~~~~~--  226 (265)
T cd06631         155 VGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMD------RLAAMFYIGAHRGL--  226 (265)
T ss_pred             ccccccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCC------hHHHHHHhhhccCC--
Confidence                     1123457889999999988888999999999999999999999996542      11111000000000  


Q ss_pred             HHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          340 RKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                                                           .+..+...+.++.+||.+||+.+|++|||+.++|+||||
T Consensus       227 -------------------------------------~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~~~~  265 (265)
T cd06631         227 -------------------------------------MPRLPDSFSAAAIDFVTSCLTRDQHERPSALQLLRHDFL  265 (265)
T ss_pred             -------------------------------------CCCCCCCCCHHHHHHHHHHhcCCcccCCCHHHHhcCCCC
Confidence                                                 011233456788999999999999999999999999997

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=5.3e-37  Score=299.00  Aligned_cols=242  Identities=13%  Similarity=0.183  Sum_probs=193.0

Q ss_pred             EeecccCceEEEEEEeCCCCeEEEEEEechhHH----hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceE
Q 013220           42 RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ----FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHL  117 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~----~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~  117 (447)
                      ..||+|+++.||+|..  +++.||+|.++....    ..+.+.+|+++++.+      .|+||+++++++.+...+...+
T Consensus        26 ~~i~~g~~~~v~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~nIv~~~g~~~~~~~~~~~~   97 (283)
T PHA02988         26 VLIKENDQNSIYKGIF--NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRI------DSNNILKIYGFIIDIVDDLPRL   97 (283)
T ss_pred             eEEeeCCceEEEEEEE--CCEEEEEEeccccccccHHHHHHHHHHHHHHHhc------CCCCEEEEeeeEEecccCCCce
Confidence            3589999999999976  688999998765432    245677999999999      7889999999987632344579


Q ss_pred             EEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCc
Q 013220          118 CMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL  196 (447)
Q Consensus       118 ~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~  196 (447)
                      ++||||+ +++|.+.+...  ..++......++.|++.||+|||+..+++||||||+||++                   
T Consensus        98 ~lv~Ey~~~g~L~~~l~~~--~~~~~~~~~~i~~~i~~~l~~lH~~~~~~Hrdlkp~nill-------------------  156 (283)
T PHA02988         98 SLILEYCTRGYLREVLDKE--KDLSFKTKLDMAIDCCKGLYNLYKYTNKPYKNLTSVSFLV-------------------  156 (283)
T ss_pred             EEEEEeCCCCcHHHHHhhC--CCCChhHHHHHHHHHHHHHHHHHhcCCCCCCcCChhhEEE-------------------
Confidence            9999999 88999988654  3588889999999999999999984499999999999999                   


Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccccCCCC
Q 013220          197 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQT  276 (447)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~gt  276 (447)
                                                                           +.++.+||+|||++...........++
T Consensus       157 -----------------------------------------------------~~~~~~kl~dfg~~~~~~~~~~~~~~~  183 (283)
T PHA02988        157 -----------------------------------------------------TENYKLKIICHGLEKILSSPPFKNVNF  183 (283)
T ss_pred             -----------------------------------------------------CCCCcEEEcccchHhhhccccccccCc
Confidence                                                                 445779999999997665555566789


Q ss_pred             CCccChHHhhc--CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhc
Q 013220          277 RQYRAPEVILR--AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  354 (447)
Q Consensus       277 ~~y~aPE~l~~--~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  354 (447)
                      ..|+|||++.+  ..++.++|||||||++|+|++|..||...+      .......+...  .                 
T Consensus       184 ~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~------~~~~~~~i~~~--~-----------------  238 (283)
T PHA02988        184 MVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLT------TKEIYDLIINK--N-----------------  238 (283)
T ss_pred             ccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCC------HHHHHHHHHhc--C-----------------
Confidence            99999999976  578999999999999999999999997542      11111111100  0                 


Q ss_pred             ccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          355 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                           .++.++...++.+.+||.+||+.||++|||++++++
T Consensus       239 ---------------------~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ell~  274 (283)
T PHA02988        239 ---------------------NSLKLPLDCPLEIKCIVEACTSHDSIKRPNIKEILY  274 (283)
T ss_pred             ---------------------CCCCCCCcCcHHHHHHHHHHhcCCcccCcCHHHHHH
Confidence                                 011123345678999999999999999999999985

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=100.00  E-value=9.1e-37  Score=296.14  Aligned_cols=278  Identities=28%  Similarity=0.472  Sum_probs=205.1

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.++||+|+||.||+|.+..+++.||+|.+....   ...+.+.+|+++++.+      +|+||+++++++..   
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~---   71 (286)
T cd07846           1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQL------RHENLVNLIEVFRR---   71 (286)
T ss_pred             CceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhc------CCcchhhHHHhccc---
Confidence            36999999999999999999998889999999865432   2345677899999998      78999999999874   


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                       +...++||||+ ++.+.......  ..+++..+..++.|++.||+|||+. ||+|+|++|+||++              
T Consensus        72 -~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~i~~~l~~LH~~-~i~h~~l~p~ni~~--------------  133 (286)
T cd07846          72 -KKRLYLVFEFVDHTVLDDLEKYP--NGLDESRVRKYLFQILRGIEFCHSH-NIIHRDIKPENILV--------------  133 (286)
T ss_pred             -CCeEEEEEecCCccHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCCHHHEEE--------------
Confidence             46899999999 55565554322  3488999999999999999999996 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                +.+..++|+|||++......  
T Consensus       134 ----------------------------------------------------------~~~~~~~l~dfg~~~~~~~~~~  155 (286)
T cd07846         134 ----------------------------------------------------------SQSGVVKLCDFGFARTLAAPGE  155 (286)
T ss_pred             ----------------------------------------------------------CCCCcEEEEeeeeeeeccCCcc
Confidence                                                                      33567999999998654322  


Q ss_pred             -cccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          270 -FAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       270 -~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                       .....++..|+|||++.+. .++.++|+|||||++|+|++|..||...+      .......+....+.+.......  
T Consensus       156 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--  227 (286)
T cd07846         156 VYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDS------DIDQLYHIIKCLGNLIPRHQEI--  227 (286)
T ss_pred             ccCcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCc------hHHHHHHHHHHhCCCchhhHHH--
Confidence             2234678899999998764 46889999999999999999999986542      3344555555555544322111  


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                           +.....................    ......+..+.+|+.+||+.+|++|||+.++++||||
T Consensus       228 -----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~~~~  286 (286)
T cd07846         228 -----FQKNPLFAGMRLPEVKEIEPLE----KRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLHHEFF  286 (286)
T ss_pred             -----hccchHhhccccccccCcchHH----HhCCCcCHHHHHHHHHHhcCCcccchhHHHHhcCCCC
Confidence                 1000000000000000000000    0122456789999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=4.8e-38  Score=314.11  Aligned_cols=243  Identities=27%  Similarity=0.380  Sum_probs=201.8

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcce
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQH  116 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~  116 (447)
                      .+++.++||+|.||.||+|++.. ...||+|.++......+.|.+|+++|+.|      .|++||++++++...    ..
T Consensus       207 ~l~l~~~LG~G~FG~V~~g~~~~-~~~vavk~ik~~~m~~~~f~~Ea~iMk~L------~H~~lV~l~gV~~~~----~p  275 (468)
T KOG0197|consen  207 ELKLIRELGSGQFGEVWLGKWNG-STKVAVKTIKEGSMSPEAFLREAQIMKKL------RHEKLVKLYGVCTKQ----EP  275 (468)
T ss_pred             HHHHHHHhcCCccceEEEEEEcC-CCcccceEEeccccChhHHHHHHHHHHhC------cccCeEEEEEEEecC----Cc
Confidence            46688899999999999998753 45789999998777778899999999999      899999999999853    47


Q ss_pred             EEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCC
Q 013220          117 LCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI  195 (447)
Q Consensus       117 ~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~  195 (447)
                      +||||||| .|+|.+++.......++..+...++.||++|++||.++ ++|||||-.+||||                  
T Consensus       276 iyIVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~-~~IHRDLAARNiLV------------------  336 (468)
T KOG0197|consen  276 IYIVTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESK-NYIHRDLAARNILV------------------  336 (468)
T ss_pred             eEEEEEecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhC-Cccchhhhhhheee------------------
Confidence            99999999 89999999875556689999999999999999999996 99999999999999                  


Q ss_pred             cCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccc-cCC
Q 013220          196 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA-EEI  274 (447)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~-~~~  274 (447)
                                                                            +.+..+|++|||+|+...+.-. ...
T Consensus       337 ------------------------------------------------------~~~~~vKIsDFGLAr~~~d~~Y~~~~  362 (468)
T KOG0197|consen  337 ------------------------------------------------------DEDLVVKISDFGLARLIGDDEYTASE  362 (468)
T ss_pred             ------------------------------------------------------ccCceEEEcccccccccCCCceeecC
Confidence                                                                  4467899999999985443321 112


Q ss_pred             ---CCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          275 ---QTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       275 ---gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                         -+..|.|||.+....|+.|+|+|||||+|++|++ |+.||...+      ..+.+..+.+                 
T Consensus       363 ~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~ms------n~ev~~~le~-----------------  419 (468)
T KOG0197|consen  363 GGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMS------NEEVLELLER-----------------  419 (468)
T ss_pred             CCCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCCC------HHHHHHHHhc-----------------
Confidence               2568999999999999999999999999999997 999998764      2222222211                 


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHh
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCL  410 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL  410 (447)
                                              ..+.+-|..+|+++-+++..||+.+|++|||++.+.
T Consensus       420 ------------------------GyRlp~P~~CP~~vY~lM~~CW~~~P~~RPtF~~L~  455 (468)
T KOG0197|consen  420 ------------------------GYRLPRPEGCPDEVYELMKSCWHEDPEDRPTFETLR  455 (468)
T ss_pred             ------------------------cCcCCCCCCCCHHHHHHHHHHhhCCcccCCCHHHHH
Confidence                                    112235667899999999999999999999998664

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=100.00  E-value=7.5e-37  Score=293.70  Aligned_cols=253  Identities=27%  Similarity=0.479  Sum_probs=201.3

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-------HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-------QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-------~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      +|+..+.||+|++|.||+|.+..+++.||+|++....       ...+.+.+|+++++.+      .|+||+++++.+..
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~   74 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARL------NHPHIIRMLGATCE   74 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHc------CCCceehhhceecc
Confidence            4888899999999999999999999999999876432       2356788999999999      78999999999875


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                      .    ...++||||+ +++|.+++...  ..+++..+..++.|++.||.|||++ |++|+||+|+||++..         
T Consensus        75 ~----~~~~~v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~ql~~al~~LH~~-~i~H~~i~~~nil~~~---------  138 (268)
T cd06630          75 D----SHFNLFVEWMAGGSVSHLLSKY--GAFKEAVIINYTEQLLRGLSYLHEN-QIIHRDVKGANLLIDS---------  138 (268)
T ss_pred             C----CeEEEEEeccCCCcHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEcC---------
Confidence            3    6899999999 88998888643  4588999999999999999999996 9999999999999932         


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                    ....++|+|||.+.....
T Consensus       139 --------------------------------------------------------------~~~~~~l~dfg~~~~~~~  156 (268)
T cd06630         139 --------------------------------------------------------------TGQRLRIADFGAAARLAA  156 (268)
T ss_pred             --------------------------------------------------------------CCCEEEEccccccccccc
Confidence                                                                          123589999999865443


Q ss_pred             c-------cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          269 Q-------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       269 ~-------~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                      .       .....++..|+|||.+.+..++.++|+|||||++|+|++|..||...+..      .....+.+...     
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~------~~~~~~~~~~~-----  225 (268)
T cd06630         157 KGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHS------NHLALIFKIAS-----  225 (268)
T ss_pred             ccccCCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCc------chHHHHHHHhc-----
Confidence            2       12235788999999998888899999999999999999999999644211      11111111100     


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccc
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  416 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~  416 (447)
                                                      .......+...+..+.+++.+||+.+|++|||+.++++||||+
T Consensus       226 --------------------------------~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~ll~~~~~~  268 (268)
T cd06630         226 --------------------------------ATTAPSIPEHLSPGLRDVTLRCLELQPEDRPPSRELLKHPVFR  268 (268)
T ss_pred             --------------------------------cCCCCCCchhhCHHHHHHHHHHcCCCcccCcCHHHHhcCcccC
Confidence                                            0001123445567899999999999999999999999999985

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=100.00  E-value=8.6e-37  Score=299.26  Aligned_cols=253  Identities=30%  Similarity=0.514  Sum_probs=203.5

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      .+|++.++||.|++|+||+|.+..+++.|++|.+.... ...+.+.+|+++++.+      .|+||+++++.+..    +
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~----~   88 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKEL------KNPNIVNFLDSFLV----G   88 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhc------CCCceeeeeeeEec----C
Confidence            57999999999999999999999999999999765432 2345778899999998      78999999999874    4


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ...++||||+ +++|...+..   ..+++..+..++.|++.||+|||+. |++|+||||+||++                
T Consensus        89 ~~~~lv~e~~~~~~L~~~~~~---~~l~~~~~~~i~~~l~~al~~LH~~-~i~H~dL~p~Nili----------------  148 (296)
T cd06655          89 DELFVVMEYLAGGSLTDVVTE---TCMDEAQIAAVCRECLQALEFLHAN-QVIHRDIKSDNVLL----------------  148 (296)
T ss_pred             ceEEEEEEecCCCcHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEE----------------
Confidence            6899999999 8888887753   3488999999999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---c
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---F  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~  270 (447)
                                                                              +....++|+|||++......   .
T Consensus       149 --------------------------------------------------------~~~~~~kl~dfg~~~~~~~~~~~~  172 (296)
T cd06655         149 --------------------------------------------------------GMDGSVKLTDFGFCAQITPEQSKR  172 (296)
T ss_pred             --------------------------------------------------------CCCCCEEEccCccchhcccccccC
Confidence                                                                    33567999999988654322   2


Q ss_pred             ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          271 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      ....++..|+|||.+.+..++.++|+|||||++|+|++|..||...+      ....+..+.. .+. +           
T Consensus       173 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~------~~~~~~~~~~-~~~-~-----------  233 (296)
T cd06655         173 STMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNEN------PLRALYLIAT-NGT-P-----------  233 (296)
T ss_pred             CCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHh-cCC-c-----------
Confidence            23467889999999988888999999999999999999999997543      1111111100 000 0           


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                ....+..++..+.+||.+||..||++|||+.+++.||||....
T Consensus       234 --------------------------~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~il~~~~~~~~~  276 (296)
T cd06655         234 --------------------------ELQNPEKLSPIFRDFLNRCLEMDVEKRGSAKELLQHPFLKLAK  276 (296)
T ss_pred             --------------------------ccCCcccCCHHHHHHHHHHhhcChhhCCCHHHHhhChHhhhcc
Confidence                                      0012234466888999999999999999999999999998654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=100.00  E-value=1e-36  Score=304.86  Aligned_cols=284  Identities=26%  Similarity=0.454  Sum_probs=204.0

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      +++|.+.+.||.|+||.||+|++..++..||+|.+.... ...+.+.+|+++++.+      .|+||+++++++......
T Consensus         4 ~~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l------~h~~i~~~~~~~~~~~~~   77 (342)
T cd07854           4 GSRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRL------DHDNIVKVYEVLGPSGSD   77 (342)
T ss_pred             CcceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhc------CCCcchhhHhhhcccccc
Confidence            479999999999999999999999999999999765432 3345688899999999      789999999887654321


Q ss_pred             ----------cceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCC
Q 013220          114 ----------GQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP  183 (447)
Q Consensus       114 ----------~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~  183 (447)
                                ....++||||++++|.+.+..   ..+++..++.++.|++.||.|||+. ||+||||||+||++..    
T Consensus        78 ~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~---~~l~~~~~~~~~~qi~~aL~~LH~~-givH~dikp~Nili~~----  149 (342)
T cd07854          78 LTEDVGSLTELNSVYIVQEYMETDLANVLEQ---GPLSEEHARLFMYQLLRGLKYIHSA-NVLHRDLKPANVFINT----  149 (342)
T ss_pred             cccccccccccceEEEEeecccccHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCHHHEEEcC----
Confidence                      136899999998788877753   3488999999999999999999996 9999999999999942    


Q ss_pred             CCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcc
Q 013220          184 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  263 (447)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a  263 (447)
                                                                                         ....++|+|||.+
T Consensus       150 -------------------------------------------------------------------~~~~~kl~dfg~~  162 (342)
T cd07854         150 -------------------------------------------------------------------EDLVLKIGDFGLA  162 (342)
T ss_pred             -------------------------------------------------------------------CCceEEECCcccc
Confidence                                                                               2346899999998


Q ss_pred             cccccc------cccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhC
Q 013220          264 CRANKQ------FAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIG  336 (447)
Q Consensus       264 ~~~~~~------~~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g  336 (447)
                      ......      .....++..|+|||.+.+ ..++.++|||||||++|+|++|+.||....      .......+.....
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~------~~~~~~~~~~~~~  236 (342)
T cd07854         163 RIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAH------ELEQMQLILESVP  236 (342)
T ss_pred             eecCCccccccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHhcC
Confidence            654321      122357889999998765 457889999999999999999999997552      2222222222221


Q ss_pred             CCCHHhhhCCCCccchhcccchhhh-hhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          337 KMPRKIAIGGAQSKDYFDRHGDLKR-IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      ........      .+......... ...........       .....+.++.+||.+||+.||++|||+.++|+||||
T Consensus       237 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~h~~~  303 (342)
T cd07854         237 VVREEDRN------ELLNVIPSFVRNDGGEPRRPLRD-------LLPGVNPEALDFLEQILTFNPMDRLTAEEALMHPYM  303 (342)
T ss_pred             CCChHHhh------hhhhhhhhhhhhcccccCCCHHH-------HccCCCHHHHHHHHHHhCCCchhccCHHHHhCCCcc
Confidence            11111000      00000000000 00000000000       112345688899999999999999999999999999


Q ss_pred             ccc
Q 013220          416 SLR  418 (447)
Q Consensus       416 ~~~  418 (447)
                      +..
T Consensus       304 ~~~  306 (342)
T cd07854         304 SCY  306 (342)
T ss_pred             ccc
Confidence            854

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=100.00  E-value=8e-37  Score=292.30  Aligned_cols=249  Identities=27%  Similarity=0.409  Sum_probs=203.7

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      +|++.+.||.|+||.||+|++..++..||+|++....    ...+.+.+|+++++.+      +|+||+++++.+..   
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~---   71 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQEL------NHPFLVNLWYSFQD---   71 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhC------CCCChHHHHHhhcC---
Confidence            5899999999999999999999899999999886543    3456788899999998      78999999998874   


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                       +...++||||+ +++|...+...  ..+++..+..++.|++.||.|||+. |++|+||+|+||++              
T Consensus        72 -~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~i~~~l~~lh~~-~i~h~dl~~~nil~--------------  133 (258)
T cd05578          72 -EENMYLVVDLLLGGDLRYHLSQK--VKFSEEQVKFWICEIVLALEYLHSK-GIIHRDIKPDNILL--------------  133 (258)
T ss_pred             -CCeEEEEEeCCCCCCHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCHHHeEE--------------
Confidence             47899999999 88998888654  4589999999999999999999996 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                +....++|+|||.+......  
T Consensus       134 ----------------------------------------------------------~~~~~~~l~d~~~~~~~~~~~~  155 (258)
T cd05578         134 ----------------------------------------------------------DEQGHVHITDFNIATKVTPDTL  155 (258)
T ss_pred             ----------------------------------------------------------cCCCCEEEeecccccccCCCcc
Confidence                                                                      34567999999998654322  


Q ss_pred             cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          270 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      .....++..|+|||.+.+..++.++|+||||+++|+|++|..||...+..       ....+.+....            
T Consensus       156 ~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~-------~~~~~~~~~~~------------  216 (258)
T cd05578         156 TTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRT-------IRDQIRAKQET------------  216 (258)
T ss_pred             ccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCcc-------HHHHHHHHhcc------------
Confidence            23346788999999998888899999999999999999999999765311       11111111100            


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCCh--HHHhcCccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA--QQCLQHPWL  415 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta--~elL~hp~f  415 (447)
                                                .....+...+..+.++|.+||+.||.+||++  +|+++||||
T Consensus       217 --------------------------~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~l~~~~~~  258 (258)
T cd05578         217 --------------------------ADVLYPATWSTEAIDAINKLLERDPQKRLGDNLKDLKNHPYF  258 (258)
T ss_pred             --------------------------ccccCcccCcHHHHHHHHHHccCChhHcCCccHHHHhcCCCC
Confidence                                      1112344456789999999999999999999  999999998

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=100.00  E-value=9.4e-37  Score=293.54  Aligned_cols=250  Identities=26%  Similarity=0.417  Sum_probs=197.0

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh------HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA------AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~------~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      .|+..+.||+|+||.||+|.+..++..|++|.+...      ......+.+|+++++.+      +|+||+++++.+...
T Consensus         3 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~~   76 (266)
T cd06651           3 NWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNL------QHERIVQYYGCLRDR   76 (266)
T ss_pred             CccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHc------CCCCeeeEEEEEEcC
Confidence            589999999999999999999999999999976532      12345678899999999      789999999987653


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                        .+..++++|||+ +++|.+.+...  ..+++.....++.|++.||+|||+. +|+|+||+|+||++            
T Consensus        77 --~~~~~~l~~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~LH~~-~i~H~~l~p~nil~------------  139 (266)
T cd06651          77 --AEKTLTIFMEYMPGGSVKDQLKAY--GALTESVTRKYTRQILEGMSYLHSN-MIVHRDIKGANILR------------  139 (266)
T ss_pred             --CCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeeeCCCCHHHEEE------------
Confidence              345789999999 78898887643  3488899999999999999999996 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                  +....++|+|||++......
T Consensus       140 ------------------------------------------------------------~~~~~~~l~dfg~~~~~~~~  159 (266)
T cd06651         140 ------------------------------------------------------------DSAGNVKLGDFGASKRLQTI  159 (266)
T ss_pred             ------------------------------------------------------------CCCCCEEEccCCCccccccc
Confidence                                                                        33567999999998643221


Q ss_pred             ------cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhh
Q 013220          270 ------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  343 (447)
Q Consensus       270 ------~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  343 (447)
                            .....++..|+|||.+.+..++.++|+|||||++|+|++|..||...+         ....+.......     
T Consensus       160 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~---------~~~~~~~~~~~~-----  225 (266)
T cd06651         160 CMSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYE---------AMAAIFKIATQP-----  225 (266)
T ss_pred             cccCCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccccc---------hHHHHHHHhcCC-----
Confidence                  122357889999999988888999999999999999999999996432         111111111000     


Q ss_pred             hCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccc
Q 013220          344 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  416 (447)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~  416 (447)
                                                      ..+.++...++.+.+|| +||..+|++|||++|+++||||.
T Consensus       226 --------------------------------~~~~~~~~~~~~~~~li-~~~~~~p~~Rp~~~eil~hp~~~  265 (266)
T cd06651         226 --------------------------------TNPQLPSHISEHARDFL-GCIFVEARHRPSAEELLRHPFAQ  265 (266)
T ss_pred             --------------------------------CCCCCchhcCHHHHHHH-HHhcCChhhCcCHHHHhcCcccc
Confidence                                            01123344466778888 67778999999999999999996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=100.00  E-value=1.6e-36  Score=291.59  Aligned_cols=251  Identities=25%  Similarity=0.402  Sum_probs=199.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh------HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA------AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~------~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      .+|++.+.||+|+||.||+|++..++..||+|.+...      ....+.+.+|+++++.+      .|+||+++++++..
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~   75 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNL------LHERIVQYYGCLRD   75 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhc------CCCCeeeEEeEecc
Confidence            3699999999999999999999999999999976532      12345778899999999      78999999998765


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                      .  ....++++|||+ +++|.+.+...  ..+++..+..++.|++.||+|||++ +|+|+||||+||++           
T Consensus        76 ~--~~~~~~~v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~l~~~l~~lH~~-~i~H~dl~p~nil~-----------  139 (265)
T cd06652          76 P--MERTLSIFMEHMPGGSIKDQLKSY--GALTENVTRKYTRQILEGVSYLHSN-MIVHRDIKGANILR-----------  139 (265)
T ss_pred             C--CCceEEEEEEecCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhC-CEecCCCCHHHEEe-----------
Confidence            3  235789999999 78898887643  3478889999999999999999996 99999999999999           


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                   +....++|+|||.+.....
T Consensus       140 -------------------------------------------------------------~~~~~~~l~Dfg~~~~~~~  158 (265)
T cd06652         140 -------------------------------------------------------------DSVGNVKLGDFGASKRLQT  158 (265)
T ss_pred             -------------------------------------------------------------cCCCCEEECcCcccccccc
Confidence                                                                         3356799999998864432


Q ss_pred             ------ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh
Q 013220          269 ------QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  342 (447)
Q Consensus       269 ------~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (447)
                            ......++..|+|||.+.+..++.++|+|||||++|+|++|+.||...+         ....+.+.....    
T Consensus       159 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~---------~~~~~~~~~~~~----  225 (265)
T cd06652         159 ICLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFE---------AMAAIFKIATQP----  225 (265)
T ss_pred             ccccccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCccc---------hHHHHHHHhcCC----
Confidence                  1223457889999999988888999999999999999999999996431         111111111110    


Q ss_pred             hhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccc
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  416 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~  416 (447)
                                                       ..+..+...+..+.++|++|| .+|++|||++++++|||+.
T Consensus       226 ---------------------------------~~~~~~~~~~~~~~~~i~~~l-~~p~~Rp~~~~il~~~~~~  265 (265)
T cd06652         226 ---------------------------------TNPVLPPHVSDHCRDFLKRIF-VEAKLRPSADELLRHTFVH  265 (265)
T ss_pred             ---------------------------------CCCCCchhhCHHHHHHHHHHh-cChhhCCCHHHHhcCcccC
Confidence                                             011234455678889999999 4999999999999999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=100.00  E-value=7.1e-37  Score=300.26  Aligned_cols=282  Identities=29%  Similarity=0.412  Sum_probs=208.1

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.++||.|+||.||+|.+..+++.||+|.+....   .....+.+|+++++.+      +|+||+++++.+.....
T Consensus         8 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~~~~   81 (311)
T cd07866           8 RDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKL------KHPNVVPLIDMAVERPD   81 (311)
T ss_pred             ccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhc------CCCCccchhhheecccc
Confidence            68999999999999999999999999999999765432   1223567899999999      78999999998765432


Q ss_pred             ----CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          113 ----NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       113 ----~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                          ....+++||||+++++...+... ...+++..+..++.|++.||+|||+. ||+|+||||+||++           
T Consensus        82 ~~~~~~~~~~lv~~~~~~~l~~~~~~~-~~~~~~~~~~~i~~~l~~al~~lH~~-~i~H~dl~p~nil~-----------  148 (311)
T cd07866          82 KSKRKRGSVYMVTPYMDHDLSGLLENP-SVKLTESQIKCYMLQLLEGINYLHEN-HILHRDIKAANILI-----------  148 (311)
T ss_pred             cccccCceEEEEEecCCcCHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEE-----------
Confidence                23578999999987887766542 24589999999999999999999996 99999999999999           


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                   +....++|+|||++.....
T Consensus       149 -------------------------------------------------------------~~~~~~~l~dfg~~~~~~~  167 (311)
T cd07866         149 -------------------------------------------------------------DNQGILKIADFGLARPYDG  167 (311)
T ss_pred             -------------------------------------------------------------CCCCCEEECcCccchhccC
Confidence                                                                         4456799999998864332


Q ss_pred             c--------------cccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHH
Q 013220          269 Q--------------FAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMME  333 (447)
Q Consensus       269 ~--------------~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~  333 (447)
                      .              .+...+++.|+|||.+.+. .++.++|+|||||++|+|++|+.||.+.      +.......+..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~------~~~~~~~~~~~  241 (311)
T cd07866         168 PPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGK------SDIDQLHLIFK  241 (311)
T ss_pred             CCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHH
Confidence            1              1122457889999998764 5789999999999999999999999765      35556666666


Q ss_pred             HhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCc
Q 013220          334 LIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP  413 (447)
Q Consensus       334 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp  413 (447)
                      ..+..++.....+........ .        .........+...   .......+.+||.+||+.||++|||+.+++.||
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~---~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~~~  309 (311)
T cd07866         242 LCGTPTEETWPGWRSLPGCEG-V--------HSFTNYPRTLEER---FGKLGPEGLDLLSKLLSLDPYKRLTASDALEHP  309 (311)
T ss_pred             HhCCCChhhchhhhhcccccc-c--------ccCCCCCccHHHH---cccCChhHHHHHHHHcccCcccCcCHHHHhcCC
Confidence            666555432111110000000 0        0000000000000   012236788999999999999999999999999


Q ss_pred             cc
Q 013220          414 WL  415 (447)
Q Consensus       414 ~f  415 (447)
                      ||
T Consensus       310 ~f  311 (311)
T cd07866         310 YF  311 (311)
T ss_pred             CC
Confidence            98

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=5.6e-37  Score=294.65  Aligned_cols=247  Identities=28%  Similarity=0.485  Sum_probs=198.4

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----------HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----------QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDH  106 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----------~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~  106 (447)
                      +|.+.+.||.|++|.||+|.+..++..||+|.+....          ...+.+.+|+++++.+      .|++|++++++
T Consensus         1 ~~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~   74 (267)
T cd06628           1 KWIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKEL------QHENIVQYLGS   74 (267)
T ss_pred             CccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhc------CCCCeeeEEEE
Confidence            5788899999999999999998889999999765321          1235678899999999      78999999998


Q ss_pred             ccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCC
Q 013220          107 FKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK  185 (447)
Q Consensus       107 ~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~  185 (447)
                      +...    ...+++|||+ +++|.+.+...  ..+++..+..++.|++.||+|||++ |++||||+|+||++        
T Consensus        75 ~~~~----~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~l~~~l~~lH~~-~ivH~di~p~nil~--------  139 (267)
T cd06628          75 SLDA----DHLNIFLEYVPGGSVAALLNNY--GAFEETLVRNFVRQILKGLNYLHNR-GIIHRDIKGANILV--------  139 (267)
T ss_pred             EEeC----CccEEEEEecCCCCHHHHHHhc--cCccHHHHHHHHHHHHHHHHHHHhc-CcccccCCHHHEEE--------
Confidence            8753    6899999999 77898888643  4588899999999999999999996 99999999999999        


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccc
Q 013220          186 DPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR  265 (447)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~  265 (447)
                                                                                      +....++|+|||.+..
T Consensus       140 ----------------------------------------------------------------~~~~~~~l~dfg~~~~  155 (267)
T cd06628         140 ----------------------------------------------------------------DNKGGIKISDFGISKK  155 (267)
T ss_pred             ----------------------------------------------------------------cCCCCEEecccCCCcc
Confidence                                                                            3356799999998865


Q ss_pred             cccc---------cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhC
Q 013220          266 ANKQ---------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIG  336 (447)
Q Consensus       266 ~~~~---------~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g  336 (447)
                      ....         .....++..|+|||.+.+..++.++|+|||||++|+|++|..||...+      .   ...+.+...
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~------~---~~~~~~~~~  226 (267)
T cd06628         156 LEANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCT------Q---LQAIFKIGE  226 (267)
T ss_pred             cccccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCcc------H---HHHHHHHhc
Confidence            4311         112357889999999988888999999999999999999999996542      1   111111110


Q ss_pred             CCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          337 KMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      .                                      ..+..+...+..+.++|.+||+.||.+||++.|+++||||
T Consensus       227 ~--------------------------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~  267 (267)
T cd06628         227 N--------------------------------------ASPEIPSNISSEAIDFLEKTFEIDHNKRPTAAELLKHPFL  267 (267)
T ss_pred             c--------------------------------------CCCcCCcccCHHHHHHHHHHccCCchhCcCHHHHhhCCCC
Confidence            0                                      0111334456788999999999999999999999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=100.00  E-value=3.1e-37  Score=295.84  Aligned_cols=256  Identities=25%  Similarity=0.440  Sum_probs=204.0

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      ++|++.+.||.|++|.||+|.+..+++.||+|.+...  ......+.+|+++++.+      .|+||+++++.+...   
T Consensus         1 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i~~~~~~~~~~---   71 (265)
T cd06605           1 DDLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKC------NSPYIVGFYGAFYNN---   71 (265)
T ss_pred             CcchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHC------CCCchhhhheeeecC---
Confidence            3688899999999999999999999999999987654  23456788899999998      789999999988754   


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh-hCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR-ELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~-~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                       ...+++|||+ +++|.+++.... ..+++..+..++.|++.||+|||+ . |++|+||||+||++              
T Consensus        72 -~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~-~i~H~dl~~~ni~~--------------  134 (265)
T cd06605          72 -GDISICMEYMDGGSLDKILKEVQ-GRIPERILGKIAVAVLKGLTYLHEKH-KIIHRDVKPSNILV--------------  134 (265)
T ss_pred             -CEEEEEEEecCCCcHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHcCCC-CeecCCCCHHHEEE--------------
Confidence             6899999999 689988886543 468899999999999999999999 7 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc-
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF-  270 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~-  270 (447)
                                                                                +....++|+|||.+....... 
T Consensus       135 ----------------------------------------------------------~~~~~~~l~d~g~~~~~~~~~~  156 (265)
T cd06605         135 ----------------------------------------------------------NSRGQIKLCDFGVSGQLVNSLA  156 (265)
T ss_pred             ----------------------------------------------------------CCCCCEEEeecccchhhHHHHh
Confidence                                                                      335679999999986543221 


Q ss_pred             ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          271 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      ....++..|+|||.+.+..++.++|+|||||++|+|++|..||...+..    .......+.......            
T Consensus       157 ~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~----~~~~~~~~~~~~~~~------------  220 (265)
T cd06605         157 KTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDP----PDGIFELLQYIVNEP------------  220 (265)
T ss_pred             hcccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCccccc----cccHHHHHHHHhcCC------------
Confidence            1256788999999999888999999999999999999999999755311    011111111111110            


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChh-hHHHHHHHHhhccccCCCCCCChHHHhcCccccc
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSET-DAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~  417 (447)
                                                .+..+.. .+..+.+||.+||..||++|||+.+++.||||+.
T Consensus       221 --------------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~~~~~~  262 (265)
T cd06605         221 --------------------------PPRLPSGKFSPDFQDFVNLCLIKDPRERPSYKELLEHPFIKK  262 (265)
T ss_pred             --------------------------CCCCChhhcCHHHHHHHHHHcCCCchhCcCHHHHhhCchhhc
Confidence                                      0112222 4668999999999999999999999999999974

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=4.9e-37  Score=295.27  Aligned_cols=252  Identities=27%  Similarity=0.375  Sum_probs=196.4

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      .++|++.++||+|+||.||+|++..+++.||+|++.... .....+.+|+.+++.+      .|+||+++++.+..    
T Consensus         8 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~------~h~~ii~~~~~~~~----   77 (267)
T cd06646           8 QHDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKEC------KHCNIVAYFGSYLS----   77 (267)
T ss_pred             hhhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhc------CCCCeeeeeEEEEe----
Confidence            367999999999999999999999999999999876432 2344677899999988      88999999998874    


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      +...++||||+ +++|.+.+...  ..+++..+..++.|++.||+|||+. ||+|||++|+||++               
T Consensus        78 ~~~~~iv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~nill---------------  139 (267)
T cd06646          78 REKLWICMEYCGGGSLQDIYHVT--GPLSELQIAYVCRETLQGLAYLHSK-GKMHRDIKGANILL---------------  139 (267)
T ss_pred             CCEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCCHHHEEE---------------
Confidence            36899999999 77888877543  3588999999999999999999996 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---  269 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---  269 (447)
                                                                               +....++|+|||.+......   
T Consensus       140 ---------------------------------------------------------~~~~~~~l~dfg~~~~~~~~~~~  162 (267)
T cd06646         140 ---------------------------------------------------------TDNGDVKLADFGVAAKITATIAK  162 (267)
T ss_pred             ---------------------------------------------------------CCCCCEEECcCccceeecccccc
Confidence                                                                     33567999999998755322   


Q ss_pred             cccCCCCCCccChHHhh---cCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCC
Q 013220          270 FAEEIQTRQYRAPEVIL---RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  346 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~---~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  346 (447)
                      .....++..|+|||.+.   ...++.++|+|||||++|+|++|..||...+...      ....+.. ....+       
T Consensus       163 ~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~~------~~~~~~~-~~~~~-------  228 (267)
T cd06646         163 RKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHPMR------ALFLMSK-SNFQP-------  228 (267)
T ss_pred             cCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccchhh------hheeeec-CCCCC-------
Confidence            22346788999999985   3447889999999999999999999986442110      0000000 00000       


Q ss_pred             CCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcc
Q 013220          347 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW  414 (447)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~  414 (447)
                                                   .........+..+.+||.+||+.||++|||++++|+|+|
T Consensus       229 -----------------------------~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~l~  267 (267)
T cd06646         229 -----------------------------PKLKDKTKWSSTFHNFVKISLTKNPKKRPTAERLLTHLF  267 (267)
T ss_pred             -----------------------------CCCccccccCHHHHHHHHHHhhCChhhCcCHHHHhcCCC
Confidence                                         000011234568899999999999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=100.00  E-value=3e-37  Score=296.76  Aligned_cols=252  Identities=27%  Similarity=0.391  Sum_probs=196.8

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      .++|.+.++||+|+||.||+|++..+++.||+|+++... .....+.+|+.+++.+      .|+||+++++.+..    
T Consensus         8 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l------~h~~ii~~~~~~~~----   77 (267)
T cd06645           8 QEDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDC------KHSNIVAYFGSYLR----   77 (267)
T ss_pred             HHHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhC------CCCCeeeEEEEEEe----
Confidence            367999999999999999999999999999999876543 2234577899999988      78999999998875    


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      +...++||||+ +++|.+++...  ..+++..+..++.|++.||+|||+. ||+|+||||+||++               
T Consensus        78 ~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dlkp~nili---------------  139 (267)
T cd06645          78 RDKLWICMEFCGGGSLQDIYHVT--GPLSESQIAYVSRETLQGLYYLHSK-GKMHRDIKGANILL---------------  139 (267)
T ss_pred             CCEEEEEEeccCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEE---------------
Confidence            36899999999 77898887643  3589999999999999999999996 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---  269 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---  269 (447)
                                                                               +....++|+|||.+......   
T Consensus       140 ---------------------------------------------------------~~~~~~~l~dfg~~~~~~~~~~~  162 (267)
T cd06645         140 ---------------------------------------------------------TDNGHVKLADFGVSAQITATIAK  162 (267)
T ss_pred             ---------------------------------------------------------CCCCCEEECcceeeeEccCcccc
Confidence                                                                     33567999999998654322   


Q ss_pred             cccCCCCCCccChHHhh---cCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCC
Q 013220          270 FAEEIQTRQYRAPEVIL---RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  346 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~---~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  346 (447)
                      .....|+..|+|||.+.   ...++.++|+|||||++|+|++|..||.....      ......... ....+..     
T Consensus       163 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~------~~~~~~~~~-~~~~~~~-----  230 (267)
T cd06645         163 RKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHP------MRALFLMTK-SNFQPPK-----  230 (267)
T ss_pred             cccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccccc------hhhHHhhhc-cCCCCCc-----
Confidence            23346899999999985   34578999999999999999999999865421      001000000 0000000     


Q ss_pred             CCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcc
Q 013220          347 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW  414 (447)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~  414 (447)
                                             .    .    .....+..+.+||.+||+.+|++|||++++++|||
T Consensus       231 -----------------------~----~----~~~~~~~~~~~li~~~l~~~P~~R~~~~~ll~~~~  267 (267)
T cd06645         231 -----------------------L----K----DKMKWSNSFHHFVKMALTKNPKKRPTAEKLLQHPF  267 (267)
T ss_pred             -----------------------c----c----ccCCCCHHHHHHHHHHccCCchhCcCHHHHhcCCC
Confidence                                   0    0    00123457889999999999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=100.00  E-value=1.4e-36  Score=289.69  Aligned_cols=250  Identities=26%  Similarity=0.389  Sum_probs=201.5

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      +|++.+.||+|+||.||+|.+..++..+|+|.+...   ......+.+|+++++.+      +|++|+++++.+..    
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i~~~~~~~~~----   70 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLL------SHPNIIEYYENFLE----   70 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhC------CCCchhheeeeEec----
Confidence            599999999999999999999999999999987543   23355788899999999      78899999998764    


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      +...++||||+ +++|.+++.......+++..+..++.|++.||+|||++ |++|+||+|+||++..             
T Consensus        71 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~-~i~h~dl~~~nil~~~-------------  136 (256)
T cd08220          71 DKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTK-LILHRDLKTQNILLDK-------------  136 (256)
T ss_pred             CCEEEEEEecCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEcC-------------
Confidence            46899999999 88999988765445588999999999999999999996 9999999999999932             


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--c
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--F  270 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--~  270 (447)
                                                                                ....++|+|||.+......  .
T Consensus       137 ----------------------------------------------------------~~~~~~l~d~~~~~~~~~~~~~  158 (256)
T cd08220         137 ----------------------------------------------------------HKMVVKIGDFGISKILSSKSKA  158 (256)
T ss_pred             ----------------------------------------------------------CCCEEEEccCCCceecCCCccc
Confidence                                                                      2345899999998755432  2


Q ss_pred             ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          271 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      ....++..|+|||.+.+..++.++|+|||||++|+|++|..||...+      .......+..  +              
T Consensus       159 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~------~~~~~~~~~~--~--------------  216 (256)
T cd08220         159 YTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAAN------LPALVLKIMS--G--------------  216 (256)
T ss_pred             cccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCc------hHHHHHHHHh--c--------------
Confidence            23467889999999988888999999999999999999999996542      1111111100  0              


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                                               ....++...+..+.+++.+||+.||++|||+.|+|+||||
T Consensus       217 -------------------------~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~ll~~p~~  256 (256)
T cd08220         217 -------------------------TFAPISDRYSPDLRQLILSMLNLDPSKRPQLSQIMAQPIC  256 (256)
T ss_pred             -------------------------CCCCCCCCcCHHHHHHHHHHccCChhhCCCHHHHhhCCCC
Confidence                                     0011233456688999999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=100.00  E-value=1.2e-36  Score=293.81  Aligned_cols=248  Identities=23%  Similarity=0.328  Sum_probs=193.3

Q ss_pred             CceEEEEee--cccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           36 GRYIAQRKL--GWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        36 ~~y~l~~~l--G~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      ++|.+.+.+  |+|+||.||++++..++..+|+|++......    ..|+.+...+.     +|+||+++++.|...   
T Consensus        14 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~----~~e~~~~~~~~-----~h~~iv~~~~~~~~~---   81 (267)
T PHA03390         14 KNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFN----AIEPMVHQLMK-----DNPNFIKLYYSVTTL---   81 (267)
T ss_pred             HhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcc----hhhHHHHHHhh-----cCCCEEEEEEEEecC---
Confidence            457777776  9999999999999999999999987654321    12343333332     689999999998854   


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                       +..++||||+ +++|.+.+....  .+++..+..++.|++.||+|||+. |++||||||+||++..             
T Consensus        82 -~~~~iv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~nil~~~-------------  144 (267)
T PHA03390         82 -KGHVLIMDYIKDGDLFDLLKKEG--KLSEAEVKKIIRQLVEALNDLHKH-NIIHNDIKLENVLYDR-------------  144 (267)
T ss_pred             -CeeEEEEEcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhC-CeeeCCCCHHHEEEeC-------------
Confidence             5899999999 889999886543  589999999999999999999996 9999999999999943             


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCccc-ceeEeecCcccccccccc
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDM-RCKVVDFGNACRANKQFA  271 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~kL~Dfg~a~~~~~~~~  271 (447)
                                                                                 .. .++|+|||.+...... .
T Consensus       145 -----------------------------------------------------------~~~~~~l~dfg~~~~~~~~-~  164 (267)
T PHA03390        145 -----------------------------------------------------------AKDRIYLCDYGLCKIIGTP-S  164 (267)
T ss_pred             -----------------------------------------------------------CCCeEEEecCccceecCCC-c
Confidence                                                                       33 6999999998655433 2


Q ss_pred             cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccc
Q 013220          272 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  351 (447)
Q Consensus       272 ~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  351 (447)
                      ...++..|+|||.+.+..++.++|+|||||++|+|++|..||.......     ..........                
T Consensus       165 ~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~-----~~~~~~~~~~----------------  223 (267)
T PHA03390        165 CYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEE-----LDLESLLKRQ----------------  223 (267)
T ss_pred             cCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcch-----hhHHHHHHhh----------------
Confidence            3467899999999998889999999999999999999999997442111     0111111100                


Q ss_pred             hhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCC-hHHHhcCcccc
Q 013220          352 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-AQQCLQHPWLS  416 (447)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpt-a~elL~hp~f~  416 (447)
                                             ......++..+..+.+||.+||+.||.+||+ ++|+|+||||.
T Consensus       224 -----------------------~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~l~h~~~~  266 (267)
T PHA03390        224 -----------------------QKKLPFIKNVSKNANDFVQSMLKYNINYRLTNYNEIIKHPFLK  266 (267)
T ss_pred             -----------------------cccCCcccccCHHHHHHHHHHhccChhhCCchHHHHhcCCccc
Confidence                                   0111123345678999999999999999996 59999999996

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=100.00  E-value=3.8e-36  Score=291.44  Aligned_cols=280  Identities=30%  Similarity=0.472  Sum_probs=207.5

Q ss_pred             eEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC-C
Q 013220           38 YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP-N  113 (447)
Q Consensus        38 y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~-~  113 (447)
                      |++.+.||.|+||.||+|++..++..||+|.++...   .....+.+|+++++.+...   .|++|+++++++..... +
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~---~h~~i~~~~~~~~~~~~~~   77 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESF---EHPNIVRLLDVCHGPRTDR   77 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhcc---CCCCcceEEEEEeeccCCC
Confidence            788999999999999999998889999999886432   2234566788888888533   69999999999886532 2


Q ss_pred             cceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          114 GQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       114 ~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ....+++|||+.+++.+.+.......+++..+..++.|++.||+|||+. +++|+|++|+||++                
T Consensus        78 ~~~~~l~~e~~~~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~-~i~h~~l~~~nili----------------  140 (287)
T cd07838          78 ELKLTLVFEHVDQDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSH-RIVHRDLKPQNILV----------------  140 (287)
T ss_pred             CceeEEEehhcccCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeeccCChhhEEE----------------
Confidence            2359999999977888877654434589999999999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--cc
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FA  271 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--~~  271 (447)
                                                                              +....++|+|||.+......  ..
T Consensus       141 --------------------------------------------------------~~~~~~~l~dfg~~~~~~~~~~~~  164 (287)
T cd07838         141 --------------------------------------------------------TSDGQVKIADFGLARIYSFEMALT  164 (287)
T ss_pred             --------------------------------------------------------ccCCCEEEeccCcceeccCCcccc
Confidence                                                                    33577999999998665432  23


Q ss_pred             cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH-hhhCCCCcc
Q 013220          272 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK-IAIGGAQSK  350 (447)
Q Consensus       272 ~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~  350 (447)
                      ...++..|+|||.+.+..++.++|+|||||++|+|++|..||...+      .......+++..+..... +........
T Consensus       165 ~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (287)
T cd07838         165 SVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTS------EADQLDKIFDVIGLPSEEEWPRNVSLPR  238 (287)
T ss_pred             cccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCC------hHHHHHHHHHHcCCCChHhcCCCcccch
Confidence            3457889999999998889999999999999999999999997652      344444454443332211 100000000


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      ..+...         .....       .......+..+.+||.+||+.||.+||++.|+++||||
T Consensus       239 ~~~~~~---------~~~~~-------~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~~~~~  287 (287)
T cd07838         239 SSFPSY---------TPRSF-------KSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQHPYF  287 (287)
T ss_pred             hhcccc---------cccch-------hhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhcCcCC
Confidence            000000         00000       01122446788999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=6.6e-37  Score=297.61  Aligned_cols=263  Identities=24%  Similarity=0.348  Sum_probs=204.2

Q ss_pred             cCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           34 NGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        34 ~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      +..+|++.+.||+|+||+||+|.+..++..||+|++...  ......+.+|+++++.+      +|+||+++++.+... 
T Consensus         3 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~~-   75 (284)
T cd06620           3 RNEDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHEC------RSPYIVSFYGAFLNE-   75 (284)
T ss_pred             cHHHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHc------CCCCcceEeeeEecC-
Confidence            347899999999999999999999989999999976543  33456788999999998      889999999998854 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                         ...++||||+ +++|...+...  ..+++..+..++.+++.||.|||+..+++|+||+|+||++             
T Consensus        76 ---~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~-------------  137 (284)
T cd06620          76 ---NNICMCMEFMDCGSLDRIYKKG--GPIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIKPSNILV-------------  137 (284)
T ss_pred             ---CEEEEEEecCCCCCHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHHhcCeeccCCCHHHEEE-------------
Confidence               6899999999 78888777543  3588999999999999999999973499999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-  269 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-  269 (447)
                                                                                 +....++|+|||++...... 
T Consensus       138 -----------------------------------------------------------~~~~~~~l~d~gl~~~~~~~~  158 (284)
T cd06620         138 -----------------------------------------------------------NSRGQIKLCDFGVSGELINSI  158 (284)
T ss_pred             -----------------------------------------------------------CCCCcEEEccCCcccchhhhc
Confidence                                                                       33567999999988654322 


Q ss_pred             cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCC--chHHHHHHHHHhCCCCHHhhhCCC
Q 013220          270 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCE--DEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                      ....+++..|+|||.+.+..++.++|+|||||++|++++|..||..........  ...........+..          
T Consensus       159 ~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  228 (284)
T cd06620         159 ADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQE----------  228 (284)
T ss_pred             cCccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhhc----------
Confidence            223478999999999988888999999999999999999999997653211000  00000000000000          


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCCh-hhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSE-TDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                                                  ....++. ..+..+.+||.+||+.||++|||++|+++||||...
T Consensus       229 ----------------------------~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~e~~~~~~~~~~  272 (284)
T cd06620         229 ----------------------------PPPRLPSSDFPEDLRDFVDACLLKDPTERPTPQQLCAMPPFIQA  272 (284)
T ss_pred             ----------------------------cCCCCCchhcCHHHHHHHHHHhcCCcccCcCHHHHhcCcccccc
Confidence                                        0001111 245678899999999999999999999999999753

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=100.00  E-value=2.6e-36  Score=288.45  Aligned_cols=251  Identities=25%  Similarity=0.388  Sum_probs=201.8

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      +|++.+.||.|+||.||+|.+..++..||+|++...   ....+.+.+|+++++.+      .|+||+++++.+...  .
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~~--~   72 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILREL------KHPNIVRYYDRIIDR--S   72 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhc------CCCccceeeeeeecC--C
Confidence            489999999999999999999999999999987543   23345678899999999      789999999987643  3


Q ss_pred             cceEEEEEecc-cccHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHH-----hhCCcccccCCCCCeEeeecCCCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSR--YKGLELNKVREICKYILTGLDYLH-----RELGIIHTDLKPENILLVSTIDPSK  185 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~--~~~l~~~~~~~i~~qil~aL~~lH-----~~~gIiH~Dikp~Nill~~~~~~~~  185 (447)
                      +...+++|||+ +++|.+.+....  ...+++..+..++.|++.||++||     +. +++|+||+|+||++        
T Consensus        73 ~~~~~~~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~-~i~h~dl~p~nili--------  143 (265)
T cd08217          73 NQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGN-TVLHRDLKPANIFL--------  143 (265)
T ss_pred             CCEEEEEehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccC-cceecCCCHHHEEE--------
Confidence            46789999999 788988886532  245889999999999999999999     85 99999999999999        


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccc
Q 013220          186 DPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR  265 (447)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~  265 (447)
                                                                                      +....++|+|||.+..
T Consensus       144 ----------------------------------------------------------------~~~~~~kl~d~g~~~~  159 (265)
T cd08217         144 ----------------------------------------------------------------DANNNVKLGDFGLAKI  159 (265)
T ss_pred             ----------------------------------------------------------------ecCCCEEEeccccccc
Confidence                                                                            3356799999999876


Q ss_pred             cccc---cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh
Q 013220          266 ANKQ---FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  342 (447)
Q Consensus       266 ~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (447)
                      ....   .....++..|+|||.+.+..++.++|+||||+++++|++|..||...+      .. .   +.+.+....   
T Consensus       160 ~~~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~------~~-~---~~~~~~~~~---  226 (265)
T cd08217         160 LGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARN------QL-Q---LASKIKEGK---  226 (265)
T ss_pred             ccCCcccccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcC------HH-H---HHHHHhcCC---
Confidence            5432   223468899999999988888999999999999999999999997542      11 1   111100000   


Q ss_pred             hhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                                                        ...++...+..+.+++.+||+.+|++|||++++|+|||+
T Consensus       227 ----------------------------------~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~il~~~~~  265 (265)
T cd08217         227 ----------------------------------FRRIPYRYSSELNEVIKSMLNVDPDKRPSTEELLQLPLI  265 (265)
T ss_pred             ----------------------------------CCCCccccCHHHHHHHHHHccCCcccCCCHHHHhhCCCC
Confidence                                              011334456789999999999999999999999999996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=100.00  E-value=1.3e-36  Score=294.20  Aligned_cols=276  Identities=32%  Similarity=0.520  Sum_probs=209.5

Q ss_pred             eEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           38 YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        38 y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      |.+.+.||.|++|.||+|.+..+++.+++|.+....   .....+.+|+++++.+      .|++|+++++.+...    
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~~----   70 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKEL------NHPNIIKLLDVFRHK----   70 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHh------cCCCcchHHHhhccC----
Confidence            677889999999999999998899999999876443   2345778899999999      789999999998753    


Q ss_pred             ceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          115 QHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       115 ~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      ...++||||+++++.+.+.... ..+++..+..++.|++.||+|||++ +|+|+||||+||++                 
T Consensus        71 ~~~~~v~e~~~~~l~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~-~i~H~dl~p~nili-----------------  131 (283)
T cd05118          71 GDLYLVFEFMDTDLYKLIKDRQ-RGLPESLIKSYLYQLLQGLAFCHSH-GILHRDLKPENLLI-----------------  131 (283)
T ss_pred             CCEEEEEeccCCCHHHHHHhhc-ccCCHHHHHHHHHHHHHHHHHHHHC-CeeecCcCHHHEEE-----------------
Confidence            7899999999778888776533 4589999999999999999999996 99999999999999                 


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---cc
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FA  271 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~~  271 (447)
                                                                             +.+..++|+|||.+......   ..
T Consensus       132 -------------------------------------------------------~~~~~~~l~df~~~~~~~~~~~~~~  156 (283)
T cd05118         132 -------------------------------------------------------NTEGVLKLADFGLARSFGSPVRPYT  156 (283)
T ss_pred             -------------------------------------------------------CCCCcEEEeeeeeeEecCCCccccc
Confidence                                                                   33567999999998655432   22


Q ss_pred             cCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          272 EEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       272 ~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      ...++..|+|||.+.+. .++.++|+|||||++|+|++|+.||...+      .......+.+..+..............
T Consensus       157 ~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (283)
T cd05118         157 HYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKS------EIDQLFKIFRTLGTPDPEVWPKFTSLA  230 (283)
T ss_pred             CccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHcCCCchHhcccchhhh
Confidence            34578899999999876 68899999999999999999999997653      344455555555554433322111110


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      ....     ...........       ....+..+..+.+||.+||+.||.+||++.+++.||||
T Consensus       231 ~~~~-----~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~~~~~  283 (283)
T cd05118         231 RNYK-----FSFPKKAGMPL-------PKLFPNASPQALDLLSQMLHYDPHKRITAEQALAHPYF  283 (283)
T ss_pred             hhhh-----hhhccccccCH-------HHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhhCCCC
Confidence            0000     00000000000       01223457789999999999999999999999999997

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.3e-36  Score=288.04  Aligned_cols=252  Identities=30%  Similarity=0.426  Sum_probs=200.4

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      ++|++.+.||.|+||.||+|.+..++..+++|++.... ...+.+.+|+++++.+      +|+||+++++.+..    +
T Consensus         3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~------~h~~i~~~~~~~~~----~   72 (262)
T cd06613           3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKEC------RHPNIVAYFGSYLR----R   72 (262)
T ss_pred             cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhC------CCCChhceEEEEEe----C
Confidence            57999999999999999999998889999999876542 3456788999999999      89999999998874    4


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ..+|++|||+ +++|..++.... ..+++..+..++.|++.||+|||++ ||+|+||+|+||++                
T Consensus        73 ~~~~l~~e~~~~~~l~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lh~~-~i~h~dl~p~ni~i----------------  134 (262)
T cd06613          73 DKLWIVMEYCGGGSLQDIYQVTR-GPLSELQIAYVCRETLKGLAYLHET-GKIHRDIKGANILL----------------  134 (262)
T ss_pred             CEEEEEEeCCCCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHhC-CceecCCChhhEEE----------------
Confidence            6899999999 678887775432 4589999999999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---c
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---F  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~  270 (447)
                                                                              +....++|+|||.+......   .
T Consensus       135 --------------------------------------------------------~~~~~~~l~d~g~~~~~~~~~~~~  158 (262)
T cd06613         135 --------------------------------------------------------TEDGDVKLADFGVSAQLTATIAKR  158 (262)
T ss_pred             --------------------------------------------------------CCCCCEEECccccchhhhhhhhcc
Confidence                                                                    33567999999998654432   2


Q ss_pred             ccCCCCCCccChHHhhcC---CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          271 AEEIQTRQYRAPEVILRA---GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~---~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                      ....++..|+|||.+.+.   .++.++|+|||||++|+|++|..||...+.      ......+ ...+..+.       
T Consensus       159 ~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~~------~~~~~~~-~~~~~~~~-------  224 (262)
T cd06613         159 KSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLHP------MRALFLI-SKSNFPPP-------  224 (262)
T ss_pred             ccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCCH------HHHHHHH-HhccCCCc-------
Confidence            334678899999999876   788999999999999999999999975421      1111110 00000000       


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcc
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW  414 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~  414 (447)
                                                   ........+.++.+||.+||..+|..|||+++++.|+|
T Consensus       225 -----------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~~~  262 (262)
T cd06613         225 -----------------------------KLKDKEKWSPVFHDFIKKCLTKDPKKRPTATKLLQHPF  262 (262)
T ss_pred             -----------------------------cccchhhhhHHHHHHHHHHcCCChhhCCCHHHHhcCCC
Confidence                                         00112334668999999999999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=100.00  E-value=3.8e-36  Score=287.05  Aligned_cols=249  Identities=28%  Similarity=0.423  Sum_probs=201.9

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      +|++.+.||.|+||.||.+++..++..+++|.+...   ......+.+|+++++.+      +|+||+++++++...   
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~------~h~~i~~~~~~~~~~---   71 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLL------QHPNIIAYYNHFMDD---   71 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhC------CCCCeeEEEeEEecC---
Confidence            599999999999999999999999999999976532   33345678999999998      789999999999753   


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                       ..++++|||+ +++|.+.+.......+++..+..++.|++.||+|||+. |++|+||+|+||++.              
T Consensus        72 -~~~~~~~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~-~i~h~dl~p~ni~~~--------------  135 (256)
T cd08221          72 -NTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKA-GILHRDIKTLNIFLT--------------  135 (256)
T ss_pred             -CeEEEEEEecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhC-CccccCCChHhEEEe--------------
Confidence             6899999999 88999988765444588999999999999999999996 999999999999993              


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc--
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF--  270 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~--  270 (447)
                                                                                ....++|+|||.+.......  
T Consensus       136 ----------------------------------------------------------~~~~~kl~d~~~~~~~~~~~~~  157 (256)
T cd08221         136 ----------------------------------------------------------KAGLIKLGDFGISKILGSEYSM  157 (256)
T ss_pred             ----------------------------------------------------------CCCCEEECcCcceEEccccccc
Confidence                                                                      35679999999986544322  


Q ss_pred             -ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 -AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 -~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                       ....+++.|+|||.+.+..++.++|+|||||++|+|++|..||....      .......+.  .+..+          
T Consensus       158 ~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~------~~~~~~~~~--~~~~~----------  219 (256)
T cd08221         158 AETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATN------PLNLVVKIV--QGNYT----------  219 (256)
T ss_pred             ccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCC------HHHHHHHHH--cCCCC----------
Confidence             34568999999999988888999999999999999999999996532      111111111  01110          


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                                                   ..+...+..+.++|.+||+.+|++||+++++|+|||+
T Consensus       220 -----------------------------~~~~~~~~~~~~~i~~~l~~~p~~R~s~~~ll~~~~l  256 (256)
T cd08221         220 -----------------------------PVVSVYSSELISLVHSLLQQDPEKRPTADEVLDQPLL  256 (256)
T ss_pred             -----------------------------CCccccCHHHHHHHHHHcccCcccCCCHHHHhhCcCC
Confidence                                         0123346688899999999999999999999999996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=100.00  E-value=7.6e-37  Score=297.40  Aligned_cols=265  Identities=22%  Similarity=0.330  Sum_probs=201.5

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      ..|...+.||+|+||.||++.+..++..||+|.+....  .....+.+|+.++..+.     .|+||+++++++...   
T Consensus         4 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~-----~~~~iv~~~~~~~~~---   75 (288)
T cd06616           4 EDLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSS-----DCPYIVKFYGALFRE---   75 (288)
T ss_pred             HHhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhc-----CCCCEeeeeeEEecC---
Confidence            35677789999999999999999999999999876432  33456788999888884     589999999987743   


Q ss_pred             cceEEEEEecccccHHHHHH---hhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          114 GQHLCMVLEFLGDSLLRLIK---YSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       114 ~~~~~lvmE~~~~~L~~~~~---~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                       ...+++|||++.++.++..   ......+++..+..++.|++.||+|||++.+|+||||||+||++.            
T Consensus        76 -~~~~~~~e~~~~~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~------------  142 (288)
T cd06616          76 -GDCWICMELMDISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELKIIHRDVKPSNILLD------------  142 (288)
T ss_pred             -CcEEEEEecccCCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcCCeeccCCCHHHEEEc------------
Confidence             5789999999766655432   222345899999999999999999999744999999999999993            


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-  269 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-  269 (447)
                                                                                  ....++|+|||++...... 
T Consensus       143 ------------------------------------------------------------~~~~~kl~dfg~~~~~~~~~  162 (288)
T cd06616         143 ------------------------------------------------------------RNGNIKLCDFGISGQLVDSI  162 (288)
T ss_pred             ------------------------------------------------------------cCCcEEEeecchhHHhccCC
Confidence                                                                        3456999999998654322 


Q ss_pred             -cccCCCCCCccChHHhhcC---CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          270 -FAEEIQTRQYRAPEVILRA---GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       270 -~~~~~gt~~y~aPE~l~~~---~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                       .....++..|+|||.+.+.   .++.++|||||||++|+|++|..||....        .....+.+.....+..+   
T Consensus       163 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~--------~~~~~~~~~~~~~~~~~---  231 (288)
T cd06616         163 AKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWN--------SVFDQLTQVVKGDPPIL---  231 (288)
T ss_pred             ccccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcc--------hHHHHHhhhcCCCCCcC---
Confidence             2334678899999999876   58899999999999999999999996431        11122222211111000   


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCCcc
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRD  423 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~~~  423 (447)
                                                     ....+..++.++.+||.+||+.||++|||++++++||||+.....+.
T Consensus       232 -------------------------------~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~~~~~~~~~~~~~  278 (288)
T cd06616         232 -------------------------------SNSEEREFSPSFVNFINLCLIKDESKRPKYKELLEHPFIKDYEERNV  278 (288)
T ss_pred             -------------------------------CCcCCCccCHHHHHHHHHHccCChhhCcCHHHHhcChhhhchhhcch
Confidence                                           00011235668999999999999999999999999999987554433

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7.3e-38  Score=312.81  Aligned_cols=268  Identities=27%  Similarity=0.385  Sum_probs=212.0

Q ss_pred             CCCCccccccCccccC----CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh-H---HhHHHHHHHHHHHHHhhc
Q 013220           20 RKGGYHAVRVGDLFNG----GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA-A---QFAQAALHEIEVLSAVAD   91 (447)
Q Consensus        20 ~~~~~~~~~~g~~~~~----~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~-~---~~~~~~~~E~~~l~~l~~   91 (447)
                      ++|+..-=.+.+++..    ..|.=.+.||.|+||.||-|++..+.+.||||.+... +   ..-+++..|++.|+.+  
T Consensus         6 r~GslKDPeiA~LF~k~DPEklf~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l--   83 (948)
T KOG0577|consen    6 RPGSLKDPEIADLFFKDDPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQL--   83 (948)
T ss_pred             CCCCCCCchHHHHHccCCHHHHHHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhc--
Confidence            4444444445565553    3488888999999999999999999999999965432 1   2235678899999999  


Q ss_pred             CCCCCcceeeeecccccccCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCC
Q 013220           92 GDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLK  171 (447)
Q Consensus        92 ~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dik  171 (447)
                          .|||+|.|-++|..    ....|+|||||-|+-.+++.-.+ +++.+-++..|+.+.+.||+|||+. +.||||||
T Consensus        84 ----~HPntieYkgCyLr----e~TaWLVMEYClGSAsDlleVhk-KplqEvEIAAi~~gaL~gLaYLHS~-~~IHRDiK  153 (948)
T KOG0577|consen   84 ----RHPNTIEYKGCYLR----EHTAWLVMEYCLGSASDLLEVHK-KPLQEVEIAAITHGALQGLAYLHSH-NRIHRDIK  153 (948)
T ss_pred             ----cCCCcccccceeec----cchHHHHHHHHhccHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHh-hHHhhhcc
Confidence                89999999999985    37899999999666666654333 6799999999999999999999996 99999999


Q ss_pred             CCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCc
Q 013220          172 PENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGI  251 (447)
Q Consensus       172 p~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (447)
                      ..|||++                                                                        .
T Consensus       154 AGNILLs------------------------------------------------------------------------e  161 (948)
T KOG0577|consen  154 AGNILLS------------------------------------------------------------------------E  161 (948)
T ss_pred             ccceEec------------------------------------------------------------------------C
Confidence            9999994                                                                        4


Q ss_pred             ccceeEeecCcccccccccccCCCCCCccChHHhh---cCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHH
Q 013220          252 DMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVIL---RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHL  328 (447)
Q Consensus       252 ~~~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~l~---~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~  328 (447)
                      .+.|||+|||.+.. ..+...++|||+|||||+|.   .+.|+.++||||||++..+|...++|+++..         .|
T Consensus       162 ~g~VKLaDFGSAsi-~~PAnsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMN---------AM  231 (948)
T KOG0577|consen  162 PGLVKLADFGSASI-MAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN---------AM  231 (948)
T ss_pred             CCeeeeccccchhh-cCchhcccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCch---------HH
Confidence            67899999999854 34557789999999999986   4679999999999999999999999987542         22


Q ss_pred             HHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCCh-hhHHHHHHHHhhccccCCCCCCChH
Q 013220          329 ALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSE-TDAREFAEFLVPLLDFTPEKRPTAQ  407 (447)
Q Consensus       329 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~~~L~~dP~kRpta~  407 (447)
                      .-++-+-...+                                      +.+.+ +-++.|+.|+..||+.=|.+|||.+
T Consensus       232 SALYHIAQNes--------------------------------------PtLqs~eWS~~F~~Fvd~CLqKipqeRptse  273 (948)
T KOG0577|consen  232 SALYHIAQNES--------------------------------------PTLQSNEWSDYFRNFVDSCLQKIPQERPTSE  273 (948)
T ss_pred             HHHHHHHhcCC--------------------------------------CCCCCchhHHHHHHHHHHHHhhCcccCCcHH
Confidence            22222211111                                      11111 2377899999999999999999999


Q ss_pred             HHhcCccccccc
Q 013220          408 QCLQHPWLSLRN  419 (447)
Q Consensus       408 elL~hp~f~~~~  419 (447)
                      ++|+|+|+.-.+
T Consensus       274 ~ll~H~fv~R~R  285 (948)
T KOG0577|consen  274 ELLKHRFVLRER  285 (948)
T ss_pred             HHhhcchhccCC
Confidence            999999998654

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=100.00  E-value=1.7e-36  Score=293.59  Aligned_cols=249  Identities=27%  Similarity=0.384  Sum_probs=197.0

Q ss_pred             ecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEE
Q 013220           44 LGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCM  119 (447)
Q Consensus        44 lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~l  119 (447)
                      ||+|+||+||+|.+..+++.||+|.+....    .....+.+|+++++.+      +|++|+++++.+..    ....|+
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~----~~~~~l   70 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKV------SSRFIVSLAYAFET----KDDLCL   70 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhC------CCCCEeeeeeEEec----CCeEEE
Confidence            699999999999999999999999876432    2234567899999999      78999999998874    368999


Q ss_pred             EEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCC
Q 013220          120 VLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER  198 (447)
Q Consensus       120 vmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~  198 (447)
                      ||||+ +++|.+.+.......+++..+..++.|++.||.|||++ |++|+||+|+||++                     
T Consensus        71 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~-~i~H~di~p~Nil~---------------------  128 (277)
T cd05577          71 VMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQR-RIVYRDLKPENVLL---------------------  128 (277)
T ss_pred             EEecCCCCcHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCHHHEEE---------------------
Confidence            99999 78998887654434689999999999999999999996 99999999999999                     


Q ss_pred             CCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc--ccccCCCC
Q 013220          199 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQT  276 (447)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~--~~~~~~gt  276 (447)
                                                                         +.+..++|+|||.+.....  ......++
T Consensus       129 ---------------------------------------------------~~~~~~~l~dfg~~~~~~~~~~~~~~~~~  157 (277)
T cd05577         129 ---------------------------------------------------DDHGNVRISDLGLAVELKGGKKIKGRAGT  157 (277)
T ss_pred             ---------------------------------------------------CCCCCEEEccCcchhhhccCCccccccCC
Confidence                                                               3356799999998865432  22234678


Q ss_pred             CCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhccc
Q 013220          277 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH  356 (447)
Q Consensus       277 ~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  356 (447)
                      ..|+|||.+.+..++.++|+|||||++|+|++|..||......      .....+.+.                      
T Consensus       158 ~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~------~~~~~~~~~----------------------  209 (277)
T cd05577         158 PGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEK------VEKEELKRR----------------------  209 (277)
T ss_pred             CCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCccc------ccHHHHHhc----------------------
Confidence            8999999998888999999999999999999999999755311      000111000                      


Q ss_pred             chhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC-----ChHHHhcCccccccc
Q 013220          357 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRN  419 (447)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp-----ta~elL~hp~f~~~~  419 (447)
                                      ........+...+..+.++|.+||+.||++||     ++.++++||||+..+
T Consensus       210 ----------------~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~h~~~~~~~  261 (277)
T cd05577         210 ----------------TLEMAVEYPDKFSPEAKDLCEALLQKDPEKRLGCRGGSADEVREHPLFKDLN  261 (277)
T ss_pred             ----------------cccccccCCccCCHHHHHHHHHHccCChhHccCCCcccHHHHHhChhhhcCC
Confidence                            00011123334567889999999999999999     899999999998655

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=100.00  E-value=2.1e-36  Score=293.90  Aligned_cols=250  Identities=26%  Similarity=0.399  Sum_probs=192.3

Q ss_pred             eecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEE
Q 013220           43 KLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLC  118 (447)
Q Consensus        43 ~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~  118 (447)
                      .||+|+||.||+|.+..++..+|+|++....    .......+|..+++.+...   +|++|+.++..+...    +..+
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~----~~~~   73 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG---DCPFIVCMTYAFHTP----DKLC   73 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhC---CCCcEeEEEEEEecC----CeEE
Confidence            3799999999999999999999999875432    1122344555555555432   789999999888743    5899


Q ss_pred             EEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcC
Q 013220          119 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE  197 (447)
Q Consensus       119 lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~  197 (447)
                      +||||+ +++|...+...  ..+++..+..++.|++.||+|||++ +|+|+||||+||++                    
T Consensus        74 lv~e~~~~~~L~~~i~~~--~~l~~~~~~~i~~qi~~al~~lH~~-~ivH~dikp~Nil~--------------------  130 (279)
T cd05633          74 FILDLMNGGDLHYHLSQH--GVFSEKEMRFYATEIILGLEHMHNR-FVVYRDLKPANILL--------------------  130 (279)
T ss_pred             EEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CcCCCCCCHHHEEE--------------------
Confidence            999999 88888777543  3489999999999999999999996 99999999999999                    


Q ss_pred             CCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-cccCCCC
Q 013220          198 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-FAEEIQT  276 (447)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-~~~~~gt  276 (447)
                                                                          +....++|+|||++...... .....|+
T Consensus       131 ----------------------------------------------------~~~~~~~l~dfg~~~~~~~~~~~~~~~~  158 (279)
T cd05633         131 ----------------------------------------------------DEHGHVRISDLGLACDFSKKKPHASVGT  158 (279)
T ss_pred             ----------------------------------------------------CCCCCEEEccCCcceeccccCccCcCCC
Confidence                                                                33567999999998654322 2334689


Q ss_pred             CCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcc
Q 013220          277 RQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  355 (447)
Q Consensus       277 ~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  355 (447)
                      ..|+|||.+.+ ..++.++|+||+||++|+|++|..||......    .........                       
T Consensus       159 ~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~----~~~~~~~~~-----------------------  211 (279)
T cd05633         159 HGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK----DKHEIDRMT-----------------------  211 (279)
T ss_pred             cCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCc----CHHHHHHHh-----------------------
Confidence            99999999874 56789999999999999999999999754211    000100000                       


Q ss_pred             cchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC-----ChHHHhcCccccccc
Q 013220          356 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRN  419 (447)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp-----ta~elL~hp~f~~~~  419 (447)
                                        ......++...+..+.++|.+||+.||.+||     |++++++||||+..+
T Consensus       212 ------------------~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~h~~~~~~~  262 (279)
T cd05633         212 ------------------LTVNVELPDSFSPELKSLLEGLLQRDVSKRLGCLGRGAQEVKEHVFFKGID  262 (279)
T ss_pred             ------------------hcCCcCCccccCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHhCccccCCC
Confidence                              0011123445577899999999999999999     699999999999865

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=3e-36  Score=296.05  Aligned_cols=253  Identities=22%  Similarity=0.351  Sum_probs=190.1

Q ss_pred             CCceEEEEeecccCceEEEEEEeCC----------------CCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTR----------------TSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSN   96 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~----------------~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~   96 (447)
                      .++|++.++||+|+||.||+|++..                ++..||+|++...  ......+.+|+++++.+      .
T Consensus         4 ~~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~   77 (304)
T cd05096           4 RGHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRL------K   77 (304)
T ss_pred             hhhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhc------C
Confidence            4789999999999999999997532                3457999987653  23345788999999998      7


Q ss_pred             cceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhcc-----------------CCCCHHHHHHHHHHHHHHHHH
Q 013220           97 EKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRY-----------------KGLELNKVREICKYILTGLDY  158 (447)
Q Consensus        97 ~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~-----------------~~l~~~~~~~i~~qil~aL~~  158 (447)
                      |+||+++++++...    ...++||||+ +++|.+++.....                 ..++...+..++.|++.||+|
T Consensus        78 h~niv~~~~~~~~~----~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~  153 (304)
T cd05096          78 DPNIIRLLGVCVDE----DPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKY  153 (304)
T ss_pred             CCCeeEEEEEEecC----CceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHH
Confidence            89999999998754    5799999999 8899888754321                 125667888999999999999


Q ss_pred             HHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 013220          159 LHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGG  238 (447)
Q Consensus       159 lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (447)
                      ||+. ||+||||||+||++                                                             
T Consensus       154 lH~~-~ivH~dlkp~Nill-------------------------------------------------------------  171 (304)
T cd05096         154 LSSL-NFVHRDLATRNCLV-------------------------------------------------------------  171 (304)
T ss_pred             HHHC-CccccCcchhheEE-------------------------------------------------------------
Confidence            9996 99999999999999                                                             


Q ss_pred             CCCCCCCccCCCcccceeEeecCccccccccc-----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh--CCC
Q 013220          239 IELPKPERCLDGIDMRCKVVDFGNACRANKQF-----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT--GDM  311 (447)
Q Consensus       239 ~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~--g~~  311 (447)
                                 +....+||+|||++.......     ....++..|+|||++.+..++.++|||||||++|+|++  +..
T Consensus       172 -----------~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~  240 (304)
T cd05096         172 -----------GENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQ  240 (304)
T ss_pred             -----------cCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCC
Confidence                       335679999999986543221     12345778999999988889999999999999999986  557


Q ss_pred             CCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHH
Q 013220          312 LFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEF  391 (447)
Q Consensus       312 Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  391 (447)
                      ||...+      ....+..+.+........                                  .....+...+..+.+|
T Consensus       241 p~~~~~------~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~l  280 (304)
T cd05096         241 PYGELT------DEQVIENAGEFFRDQGRQ----------------------------------VYLFRPPPCPQGLYEL  280 (304)
T ss_pred             CCCcCC------HHHHHHHHHHHhhhcccc----------------------------------ccccCCCCCCHHHHHH
Confidence            776542      111222111110000000                                  0001123346689999


Q ss_pred             HhhccccCCCCCCChHHHh
Q 013220          392 LVPLLDFTPEKRPTAQQCL  410 (447)
Q Consensus       392 l~~~L~~dP~kRpta~elL  410 (447)
                      |.+||+.||++|||+.++.
T Consensus       281 i~~cl~~~p~~RPs~~~i~  299 (304)
T cd05096         281 MLQCWSRDCRERPSFSDIH  299 (304)
T ss_pred             HHHHccCCchhCcCHHHHH
Confidence            9999999999999999994

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=100.00  E-value=2.4e-36  Score=292.57  Aligned_cols=253  Identities=29%  Similarity=0.439  Sum_probs=203.8

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      ..|+..++||.|+||.||+|.+..++..||+|+++..  ......+.+|+++++.+      .|++|+++++++...   
T Consensus         4 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~~---   74 (277)
T cd06640           4 ELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQC------DSPYVTKYYGSYLKG---   74 (277)
T ss_pred             HhhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhC------CCCCEeeEEEEEEEC---
Confidence            4688899999999999999999989999999987643  23356788899999988      789999999998753   


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                       ...++||||+ +++|.+.+..   ..+++..+..++.|++.||+|||+. +++|+||+|+||+++              
T Consensus        75 -~~~~lv~e~~~~~~L~~~i~~---~~l~~~~~~~~~~~l~~~l~~lh~~-~ivH~dl~p~Nil~~--------------  135 (277)
T cd06640          75 -TKLWIIMEYLGGGSALDLLRA---GPFDEFQIATMLKEILKGLDYLHSE-KKIHRDIKAANVLLS--------------  135 (277)
T ss_pred             -CEEEEEEecCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhC-CccCcCCChhhEEEc--------------
Confidence             6899999999 8889887754   3478889999999999999999996 999999999999993              


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---  269 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---  269 (447)
                                                                                ....++|+|||.+......   
T Consensus       136 ----------------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~  157 (277)
T cd06640         136 ----------------------------------------------------------EQGDVKLADFGVAGQLTDTQIK  157 (277)
T ss_pred             ----------------------------------------------------------CCCCEEEcccccceeccCCccc
Confidence                                                                      3456999999998654322   


Q ss_pred             cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          270 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      .....++..|+|||.+.+..++.++|+|||||++|+|++|..||......         .........            
T Consensus       158 ~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~---------~~~~~~~~~------------  216 (277)
T cd06640         158 RNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPM---------RVLFLIPKN------------  216 (277)
T ss_pred             cccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChH---------hHhhhhhcC------------
Confidence            12235788999999998888999999999999999999999999654211         000000000            


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                                                ..+..+...+..+.+||.+||+.+|++|||++++++||||.....+
T Consensus       217 --------------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~~~  262 (277)
T cd06640         217 --------------------------NPPTLTGEFSKPFKEFIDACLNKDPSFRPTAKELLKHKFIVKNAKK  262 (277)
T ss_pred             --------------------------CCCCCchhhhHHHHHHHHHHcccCcccCcCHHHHHhChHhhhcchh
Confidence                                      0011334456788999999999999999999999999999876544

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=3.5e-36  Score=291.58  Aligned_cols=278  Identities=30%  Similarity=0.504  Sum_probs=208.1

Q ss_pred             eEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH--hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           38 YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ--FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        38 y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~--~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      |++.+.||.|++|+||+|+...+++.|+||.+.....  ......+|++.++.+.     +|++|+++++.+..    +.
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~-----~h~~i~~~~~~~~~----~~   71 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLN-----EHPNIVKLKEVFRE----ND   71 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhcc-----CCCCchhHHHHhhc----CC
Confidence            6889999999999999999988899999998765422  2224456888888883     49999999999875    46


Q ss_pred             eEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCC
Q 013220          116 HLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI  195 (447)
Q Consensus       116 ~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~  195 (447)
                      ..++||||+++++.+.+.......+++..+..++.|++.+|.|||++ |++|+||+|+||++                  
T Consensus        72 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~-~i~H~dl~~~ni~i------------------  132 (283)
T cd07830          72 ELYFVFEYMEGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKH-GFFHRDLKPENLLV------------------  132 (283)
T ss_pred             cEEEEEecCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCChhhEEE------------------
Confidence            89999999988898887654434589999999999999999999996 99999999999999                  


Q ss_pred             cCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc--ccccC
Q 013220          196 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEE  273 (447)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~--~~~~~  273 (447)
                                                                            +....++|+|||.+.....  .....
T Consensus       133 ------------------------------------------------------~~~~~~~l~d~~~~~~~~~~~~~~~~  158 (283)
T cd07830         133 ------------------------------------------------------SGPEVVKIADFGLAREIRSRPPYTDY  158 (283)
T ss_pred             ------------------------------------------------------cCCCCEEEeecccceeccCCCCcCCC
Confidence                                                                  3457799999999975543  22345


Q ss_pred             CCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccch
Q 013220          274 IQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  352 (447)
Q Consensus       274 ~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  352 (447)
                      .++..|+|||++.+ ..++.++|+||||+++++|++|+.||...      ........+...++.++.............
T Consensus       159 ~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (283)
T cd07830         159 VSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGS------SEIDQLYKICSVLGTPTKQDWPEGYKLASK  232 (283)
T ss_pred             CCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCC------ChHHHHHHHHHhcCCCChhhhhhHhhhhcc
Confidence            67889999998864 45789999999999999999999999766      345556666666666554321111000000


Q ss_pred             hcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          353 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      +.          ............  ......+..+.+||++||+.||++|||++|++.||||
T Consensus       233 ~~----------~~~~~~~~~~~~--~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~~~~  283 (283)
T cd07830         233 LG----------FRFPQFAPTSLH--QLIPNASPEAIDLIKDMLRWDPKKRPTASQALQHPYF  283 (283)
T ss_pred             cc----------ccccccccccHH--HHcccCCHHHHHHHHHhcccCcccCCCHHHHhhCCCC
Confidence            00          000000000000  0111225679999999999999999999999999997

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=100.00  E-value=1.5e-36  Score=293.06  Aligned_cols=248  Identities=30%  Similarity=0.458  Sum_probs=202.4

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      .+|.+.+.||+|+||.||+|++..++..||+|++....    .....+.+|.++++.+.     .|+||+++++.+..  
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~-----~~~~i~~~~~~~~~--   73 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLN-----GHPGIIKLYYTFQD--   73 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcc-----cCCCchhHHHHhcC--
Confidence            36999999999999999999999999999999887532    33456788999998883     49999999998875  


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                        +...++|||++ +++|.+.+...  ..+++..+..++.|++.||++||+. |++|+||+|+||++             
T Consensus        74 --~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~i~~ql~~~l~~Lh~~-~~~H~dl~~~ni~i-------------  135 (280)
T cd05581          74 --EENLYFVLEYAPNGELLQYIRKY--GSLDEKCTRFYAAEILLALEYLHSK-GIIHRDLKPENILL-------------  135 (280)
T ss_pred             --CceEEEEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeecCCCHHHeEE-------------
Confidence              36899999999 89999888654  3589999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF  270 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~  270 (447)
                                                                                 ..+..++|+|||.+.......
T Consensus       136 -----------------------------------------------------------~~~~~~~l~df~~~~~~~~~~  156 (280)
T cd05581         136 -----------------------------------------------------------DKDMHIKITDFGTAKVLDPNS  156 (280)
T ss_pred             -----------------------------------------------------------CCCCCEEecCCccccccCCcc
Confidence                                                                       335679999999886543221


Q ss_pred             -----------------------ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHH
Q 013220          271 -----------------------AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDH  327 (447)
Q Consensus       271 -----------------------~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~  327 (447)
                                             ....++..|+|||.+....++.++|+|||||+++++++|..||...+      ....
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~------~~~~  230 (280)
T cd05581         157 SPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSN------EYLT  230 (280)
T ss_pred             ccccCCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCcc------HHHH
Confidence                                   12356789999999988888999999999999999999999997552      1111


Q ss_pred             HHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCCh-
Q 013220          328 LALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA-  406 (447)
Q Consensus       328 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta-  406 (447)
                      ...                                          +......++...++.+.+||.+||+.||.+|||+ 
T Consensus       231 ~~~------------------------------------------~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~  268 (280)
T cd05581         231 FQK------------------------------------------ILKLEYSFPPNFPPDAKDLIEKLLVLDPQDRLGVN  268 (280)
T ss_pred             HHH------------------------------------------HHhcCCCCCCccCHHHHHHHHHHhcCCHhhCCCcc
Confidence            111                                          1111222444557789999999999999999999 


Q ss_pred             ---HHHhcCccc
Q 013220          407 ---QQCLQHPWL  415 (447)
Q Consensus       407 ---~elL~hp~f  415 (447)
                         +++++||||
T Consensus       269 ~~~~~ll~~~~~  280 (280)
T cd05581         269 EGYDELKAHPFF  280 (280)
T ss_pred             cCHHHHhcCCCC
Confidence               999999998

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=100.00  E-value=4.3e-36  Score=290.81  Aligned_cols=279  Identities=29%  Similarity=0.462  Sum_probs=210.1

Q ss_pred             eEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           38 YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        38 y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      |++.++||.|++|.||+|.+..++..||+|.+...   ......+.+|+++++.+      .|+|++++++++...  ..
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~~--~~   72 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKL------RHPNIVRLKEIVTSK--GK   72 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhc------cCCCeeeheeeEecC--CC
Confidence            68899999999999999999989999999988755   23345678899999999      789999999998753  13


Q ss_pred             ceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          115 QHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       115 ~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      ...++||||++++|..++.... ..+++..+..++.|++.||+|||+. |++|+||+|+||++                 
T Consensus        73 ~~~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~i~~~i~~al~~LH~~-~~~h~dl~p~nil~-----------------  133 (287)
T cd07840          73 GSIYMVFEYMDHDLTGLLDSPE-VKFTESQIKCYMKQLLEGLQYLHSN-GILHRDIKGSNILI-----------------  133 (287)
T ss_pred             CcEEEEeccccccHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHHC-CceeccCcHHHeEE-----------------
Confidence            6899999999778888776432 4589999999999999999999996 99999999999999                 


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc----c
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----F  270 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~----~  270 (447)
                                                                             +.++.++|+|||.+......    .
T Consensus       134 -------------------------------------------------------~~~~~~~l~d~g~~~~~~~~~~~~~  158 (287)
T cd07840         134 -------------------------------------------------------NNDGVLKLADFGLARPYTKRNSADY  158 (287)
T ss_pred             -------------------------------------------------------cCCCCEEEccccceeeccCCCcccc
Confidence                                                                   34567999999999755433    2


Q ss_pred             ccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 AEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      ....++..|+|||.+.+ ..++.++|||||||++|+|++|..||...      +....+..+....+..+..........
T Consensus       159 ~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (287)
T cd07840         159 TNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGS------TELEQLEKIFELCGSPTDENWPGVSKL  232 (287)
T ss_pred             cccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCC------ChHHHHHHHHHHhCCCchhhccccccc
Confidence            33466889999998765 35789999999999999999999999765      344555666665555543321111110


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                       ..+... .       ........+...  +....+..+.++|.+||+.+|++|||+.+++.||||
T Consensus       233 -~~~~~~-~-------~~~~~~~~~~~~--~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~~~~~  287 (287)
T cd07840         233 -PWFENL-K-------PKKPYKRRLREF--FKHLIDPSALDLLDKLLTLDPKKRISADQALQHEYF  287 (287)
T ss_pred             -hhhhhc-c-------ccccchhHHHHH--hcccCCHHHHHHHHHHcCCChhhCcCHHHHhhCcCC
Confidence             000000 0       000011111111  111136789999999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=100.00  E-value=5.4e-36  Score=294.48  Aligned_cols=252  Identities=26%  Similarity=0.391  Sum_probs=198.5

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      .|++.+.||+|+||.||+|.+..+++.|++|.+....    .....+.+|+++++.+      .|+||+++++.+..   
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i~~~~~~~~~---   72 (305)
T cd05609           2 DFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFA------ENPFVVSMFCSFET---   72 (305)
T ss_pred             CceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhC------CCCCeeeeEEEEec---
Confidence            6999999999999999999999999999999876543    2345677899999988      78999999998874   


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                       +.++++||||+ +++|.+.+...  ..+++..+..++.|++.||+|||+. |++||||||+||++              
T Consensus        73 -~~~~~lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dl~p~NIll--------------  134 (305)
T cd05609          73 -KRHLCMVMEYVEGGDCATLLKNI--GALPVDMARMYFAETVLALEYLHNY-GIVHRDLKPDNLLI--------------  134 (305)
T ss_pred             -CCEEEEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCchHHEEE--------------
Confidence             46899999999 78898888654  3588999999999999999999996 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc---
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---  268 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~---  268 (447)
                                                                                +..+.++|+|||.+.....   
T Consensus       135 ----------------------------------------------------------~~~~~~~l~dfg~~~~~~~~~~  156 (305)
T cd05609         135 ----------------------------------------------------------TSMGHIKLTDFGLSKIGLMSLT  156 (305)
T ss_pred             ----------------------------------------------------------CCCCCEEEeeCCCccccCcCcc
Confidence                                                                      3356799999998753110   


Q ss_pred             ---------------ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHH
Q 013220          269 ---------------QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMME  333 (447)
Q Consensus       269 ---------------~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~  333 (447)
                                     ......++..|+|||.+.+..++.++|+|||||++|+|++|..||.+.+      ..........
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~------~~~~~~~~~~  230 (305)
T cd05609         157 TNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDT------PEELFGQVIS  230 (305)
T ss_pred             ccccccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHh
Confidence                           0112356788999999988889999999999999999999999997542      1111111110


Q ss_pred             HhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCC---hHHHh
Q 013220          334 LIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT---AQQCL  410 (447)
Q Consensus       334 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpt---a~elL  410 (447)
                        +..+                                     .+......+..+.+||.+||+.||++||+   +.++|
T Consensus       231 --~~~~-------------------------------------~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~ll  271 (305)
T cd05609         231 --DDIE-------------------------------------WPEGDEALPADAQDLISRLLRQNPLERLGTGGAFEVK  271 (305)
T ss_pred             --cccC-------------------------------------CCCccccCCHHHHHHHHHHhccChhhccCccCHHHHH
Confidence              0000                                     00011134668899999999999999998   79999


Q ss_pred             cCcccccc
Q 013220          411 QHPWLSLR  418 (447)
Q Consensus       411 ~hp~f~~~  418 (447)
                      +||||...
T Consensus       272 ~~~~~~~~  279 (305)
T cd05609         272 QHRFFLGL  279 (305)
T ss_pred             hCccccCC
Confidence            99999654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=100.00  E-value=3.2e-36  Score=294.79  Aligned_cols=282  Identities=27%  Similarity=0.433  Sum_probs=209.3

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC-
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG-  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~-  111 (447)
                      ++|++.+.||+|+||+||+|.+..+++.||+|.++...   .....+.+|+++++.+      +|+||+++++++.... 
T Consensus         7 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l------~h~~i~~~~~~~~~~~~   80 (302)
T cd07864           7 DKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQL------NHRNIVNLKEIVTDKQD   80 (302)
T ss_pred             hhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhC------CCCCeeeeeheecCcch
Confidence            68999999999999999999999899999999876432   2234667899999999      7899999999887542 


Q ss_pred             -----CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCC
Q 013220          112 -----PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKD  186 (447)
Q Consensus       112 -----~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~  186 (447)
                           ..+..+++||||+++++...+... ...+++..+..++.|++.||+|||+. ||+|+||||+||++         
T Consensus        81 ~~~~~~~~~~~~lv~e~~~~~l~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~-~i~H~dl~p~nili---------  149 (302)
T cd07864          81 ALDFKKDKGAFYLVFEYMDHDLMGLLESG-LVHFSEDHIKSFMKQLLEGLNYCHKK-NFLHRDIKCSNILL---------  149 (302)
T ss_pred             hhhccccCCcEEEEEcccCccHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEE---------
Confidence                 122389999999977877776543 34589999999999999999999996 99999999999999         


Q ss_pred             cccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccc
Q 013220          187 PIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA  266 (447)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~  266 (447)
                                                                                     +....++|+|||.+...
T Consensus       150 ---------------------------------------------------------------~~~~~~kl~dfg~~~~~  166 (302)
T cd07864         150 ---------------------------------------------------------------NNKGQIKLADFGLARLY  166 (302)
T ss_pred             ---------------------------------------------------------------CCCCcEEeCcccccccc
Confidence                                                                           34567999999998654


Q ss_pred             cccc----ccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          267 NKQF----AEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       267 ~~~~----~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                      ....    ....++..|+|||.+.+. .++.++|||||||++++|++|+.||...      +....+..+.+..+..+..
T Consensus       167 ~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~  240 (302)
T cd07864         167 NSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQAN------QELAQLELISRLCGSPCPA  240 (302)
T ss_pred             cCCcccccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCC------ChHHHHHHHHHHhCCCChh
Confidence            3221    223457889999988754 4689999999999999999999999754      3555666666666655543


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      ....... ...+........        .......   .....+..+.++|.+||+.||.+|||+.+++.||||
T Consensus       241 ~~~~~~~-~~~~~~~~~~~~--------~~~~~~~---~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~~~~  302 (302)
T cd07864         241 VWPDVIK-LPYFNTMKPKKQ--------YRRRLRE---EFSFIPTPALDLLDHMLTLDPSKRCTAEEALNSPWL  302 (302)
T ss_pred             hcccccc-cccccccccccc--------cccchhh---hcCCCCHHHHHHHHHHccCChhhCCCHHHHhcCCCC
Confidence            2111100 001100000000        0000000   011235688999999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=100.00  E-value=1.1e-36  Score=297.80  Aligned_cols=254  Identities=28%  Similarity=0.461  Sum_probs=200.4

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      +.|.....||.|+||.||++.+..++..||||.+.... .....+.+|+.+++.+      +|+||+++++.+..    +
T Consensus        22 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l------~h~~ii~~~~~~~~----~   91 (292)
T cd06658          22 EYLDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDY------HHENVVDMYNSYLV----G   91 (292)
T ss_pred             HHHhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhC------CCCcHHHHHHheec----C
Confidence            45666788999999999999998899999999875432 3345688899999988      78999999998874    4


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      +..++||||+ +++|.+.+..   ..+++..+..++.|++.||+|||++ ||+||||||+||++                
T Consensus        92 ~~~~lv~e~~~~~~L~~~~~~---~~l~~~~~~~~~~qi~~~l~~LH~~-~ivH~dlkp~Nill----------------  151 (292)
T cd06658          92 DELWVVMEFLEGGALTDIVTH---TRMNEEQIATVCLSVLRALSYLHNQ-GVIHRDIKSDSILL----------------  151 (292)
T ss_pred             CeEEEEEeCCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC-CEeecCCCHHHEEE----------------
Confidence            7899999999 7788777643   3488999999999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---c
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---F  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~  270 (447)
                                                                              +.+..++|+|||++......   .
T Consensus       152 --------------------------------------------------------~~~~~~kL~dfg~~~~~~~~~~~~  175 (292)
T cd06658         152 --------------------------------------------------------TSDGRIKLSDFGFCAQVSKEVPKR  175 (292)
T ss_pred             --------------------------------------------------------cCCCCEEEccCcchhhcccccccC
Confidence                                                                    33567999999988643322   1


Q ss_pred             ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          271 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      ....++..|+|||.+.+..++.++|+|||||++|+|++|..||...+      ....+..+.   ...+..         
T Consensus       176 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~------~~~~~~~~~---~~~~~~---------  237 (292)
T cd06658         176 KSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEP------PLQAMRRIR---DNLPPR---------  237 (292)
T ss_pred             ceeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHH---hcCCCc---------
Confidence            23468899999999988889999999999999999999999997542      111111111   010100         


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccC
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~  420 (447)
                                                 .......+..+.+||.+||..||.+|||++++++||||.....
T Consensus       238 ---------------------------~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~~~~~~~~~  280 (292)
T cd06658         238 ---------------------------VKDSHKVSSVLRGFLDLMLVREPSQRATAQELLQHPFLKLAGP  280 (292)
T ss_pred             ---------------------------cccccccCHHHHHHHHHHccCChhHCcCHHHHhhChhhhccCC
Confidence                                       0011123557889999999999999999999999999997553

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=2.7e-36  Score=289.82  Aligned_cols=246  Identities=21%  Similarity=0.312  Sum_probs=197.7

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      ..|.+.++||+|+||.||+|.+..++..||+|.+..+......+.+|+++++.+      .|++|+++++.+...    .
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~~----~   75 (263)
T cd05052           6 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEI------KHPNLVQLLGVCTRE----P   75 (263)
T ss_pred             HHeEEeeecCCcccceEEEEEEecCCceEEEEEecCCchHHHHHHHHHHHHHhC------CCCChhheEEEEcCC----C
Confidence            569999999999999999999998999999999887665567788999999999      789999999987743    6


Q ss_pred             eEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          116 HLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       116 ~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      .++++|||+ +++|.+.+.......+++..+..++.|++.||+|||++ |++||||||+||++                 
T Consensus        76 ~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~-~i~H~dlkp~nil~-----------------  137 (263)
T cd05052          76 PFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKK-NFIHRDLAARNCLV-----------------  137 (263)
T ss_pred             CcEEEEEeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhC-CEeecccCcceEEE-----------------
Confidence            789999999 78999888654445588899999999999999999996 99999999999999                 


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccccc--
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAE--  272 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~~--  272 (447)
                                                                             +....++|+|||.+.........  
T Consensus       138 -------------------------------------------------------~~~~~~kl~df~~~~~~~~~~~~~~  162 (263)
T cd05052         138 -------------------------------------------------------GENHLVKVADFGLSRLMTGDTYTAH  162 (263)
T ss_pred             -------------------------------------------------------cCCCcEEeCCCccccccccceeecc
Confidence                                                                   33567999999998654432111  


Q ss_pred             --CCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          273 --EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       273 --~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                        ...+..|+|||.+.+..++.++|||||||++|+|++ |..||...+      .......+..   .            
T Consensus       163 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~------~~~~~~~~~~---~------------  221 (263)
T cd05052         163 AGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID------LSQVYELLEK---G------------  221 (263)
T ss_pred             CCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCC------HHHHHHHHHC---C------------
Confidence              123567999999988889999999999999999998 999986542      1111111100   0            


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                .....+...+.++.++|.+||+.||++|||+.++++
T Consensus       222 --------------------------~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~l~~  257 (263)
T cd05052         222 --------------------------YRMERPEGCPPKVYELMRACWQWNPSDRPSFAEIHQ  257 (263)
T ss_pred             --------------------------CCCCCCCCCCHHHHHHHHHHccCCcccCCCHHHHHH
Confidence                                      011123445678999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=3.4e-36  Score=290.18  Aligned_cols=252  Identities=29%  Similarity=0.476  Sum_probs=196.3

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-----------HhHHHHHHHHHHHHHhhcCCCCCcceeeeecc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-----------QFAQAALHEIEVLSAVADGDPSNEKCVIRLID  105 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-----------~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~  105 (447)
                      +|.+.+.||.|+||.||+|.+..+++.||+|.++...           ...+.+..|+++++.+      +|++|+++++
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~   75 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDL------DHLNIVQYLG   75 (272)
T ss_pred             ceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhc------CCCCcceEEE
Confidence            5899999999999999999998889999999765321           1234577899999988      7899999999


Q ss_pred             cccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCC
Q 013220          106 HFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       106 ~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~  184 (447)
                      ++..    ....++||||+ +++|.+.+...  ..+++..+..++.|++.||.|||++ |++|+||+|+||++       
T Consensus        76 ~~~~----~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~~~nil~-------  141 (272)
T cd06629          76 FETT----EEYLSIFLEYVPGGSIGSCLRTY--GRFEEQLVRFFTEQVLEGLAYLHSK-GILHRDLKADNLLV-------  141 (272)
T ss_pred             Eecc----CCceEEEEecCCCCcHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHhhC-CeeecCCChhhEEE-------
Confidence            8764    46899999999 88999887654  4588999999999999999999996 99999999999999       


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                       +....++|+|||.+.
T Consensus       142 -----------------------------------------------------------------~~~~~~~l~d~~~~~  156 (272)
T cd06629         142 -----------------------------------------------------------------DADGICKISDFGISK  156 (272)
T ss_pred             -----------------------------------------------------------------cCCCeEEEeeccccc
Confidence                                                                             335679999999986


Q ss_pred             ccccc-----cccCCCCCCccChHHhhcCC--CCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCC
Q 013220          265 RANKQ-----FAEEIQTRQYRAPEVILRAG--YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK  337 (447)
Q Consensus       265 ~~~~~-----~~~~~gt~~y~aPE~l~~~~--~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~  337 (447)
                      .....     .....++..|+|||.+....  ++.++|+||||+++|++++|..||...+         ....+.+....
T Consensus       157 ~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~---------~~~~~~~~~~~  227 (272)
T cd06629         157 KSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEE---------AIAAMFKLGNK  227 (272)
T ss_pred             cccccccccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcc---------hHHHHHHhhcc
Confidence            54322     12235788999999987654  7899999999999999999999995331         11111111100


Q ss_pred             CCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          338 MPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      ...                           ...      .......++..+.+||.+||+.+|++|||++++|+||||
T Consensus       228 ~~~---------------------------~~~------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~  272 (272)
T cd06629         228 RSA---------------------------PPI------PPDVSMNLSPVALDFLNACFTINPDNRPTARELLQHPFI  272 (272)
T ss_pred             ccC---------------------------CcC------CccccccCCHHHHHHHHHHhcCChhhCCCHHHHhhCCCC
Confidence            000                           000      000112346789999999999999999999999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=8.2e-38  Score=308.93  Aligned_cols=252  Identities=29%  Similarity=0.401  Sum_probs=207.7

Q ss_pred             EEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcce
Q 013220           40 AQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQH  116 (447)
Q Consensus        40 l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~  116 (447)
                      -.+.||+|.||+||-|.++.+|+.||||++.+-   ......+++|+++|+.+      .||+||.+.-.|..    .+.
T Consensus       568 ~devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l------~HPGiV~le~M~ET----~er  637 (888)
T KOG4236|consen  568 ADEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNL------HHPGIVNLECMFET----PER  637 (888)
T ss_pred             hHhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhc------CCCCeeEEEEeecC----Cce
Confidence            357799999999999999999999999987643   23356899999999999      89999999988885    489


Q ss_pred             EEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCc
Q 013220          117 LCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL  196 (447)
Q Consensus       117 ~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~  196 (447)
                      +++|||.+.|++...+.......+++...+.++.||+.||.|||-+ +|+|.|+||+|+|+...                
T Consensus       638 vFVVMEKl~GDMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~k-nIvHCDLKPENVLLas~----------------  700 (888)
T KOG4236|consen  638 VFVVMEKLHGDMLEMILSSEKGRLPERITKFLVTQILVALRYLHFK-NIVHCDLKPENVLLASA----------------  700 (888)
T ss_pred             EEEEehhhcchHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhc-ceeeccCCchheeeccC----------------
Confidence            9999999988887777666666799999999999999999999997 99999999999999542                


Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--cccCC
Q 013220          197 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FAEEI  274 (447)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--~~~~~  274 (447)
                                                                           +.-..+||||||+|..+...  ....+
T Consensus       701 -----------------------------------------------------~~FPQvKlCDFGfARiIgEksFRrsVV  727 (888)
T KOG4236|consen  701 -----------------------------------------------------SPFPQVKLCDFGFARIIGEKSFRRSVV  727 (888)
T ss_pred             -----------------------------------------------------CCCCceeeccccceeecchhhhhhhhc
Confidence                                                                 22346999999999876532  34458


Q ss_pred             CCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHH-HhCCCCHHhhhCCCCccchh
Q 013220          275 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMME-LIGKMPRKIAIGGAQSKDYF  353 (447)
Q Consensus       275 gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~  353 (447)
                      ||+.|.|||++..+.|...-||||+|||+|.-+.|.+||...        ++..+++.. .+=-+|..            
T Consensus       728 GTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEd--------EdIndQIQNAaFMyPp~P------------  787 (888)
T KOG4236|consen  728 GTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNED--------EDINDQIQNAAFMYPPNP------------  787 (888)
T ss_pred             CCccccCHHHHhhccccccccceeeeEEEEEEecccccCCCc--------cchhHHhhccccccCCCc------------
Confidence            999999999999999999999999999999999999999633        222222221 01111111            


Q ss_pred             cccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          354 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                                                 -++++.++.|||..+|+..-.+|-+.++.|.|||+++-
T Consensus       788 ---------------------------W~eis~~AidlIn~LLqVkm~kRysvdk~lsh~Wlq~y  825 (888)
T KOG4236|consen  788 ---------------------------WSEISPEAIDLINNLLQVKMRKRYSVDKSLSHPWLQDY  825 (888)
T ss_pred             ---------------------------hhhcCHHHHHHHHHHHHHHHHHhcchHhhccchhhhcc
Confidence                                       13568899999999999999999999999999999864

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=100.00  E-value=3.2e-36  Score=299.97  Aligned_cols=279  Identities=29%  Similarity=0.478  Sum_probs=208.3

Q ss_pred             CceE-EEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhH---------------HHHHHHHHHHHHhhcCCCCCcce
Q 013220           36 GRYI-AQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFA---------------QAALHEIEVLSAVADGDPSNEKC   99 (447)
Q Consensus        36 ~~y~-l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~---------------~~~~~E~~~l~~l~~~~~~~~~~   99 (447)
                      ++|. +.+.||.|+||+||+|.+..+++.||+|.++......               ..+.+|+++++.+      .|+|
T Consensus         8 ~ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~   81 (335)
T PTZ00024          8 ERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEI------KHEN   81 (335)
T ss_pred             cchhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhC------CCcc
Confidence            6776 4577999999999999999999999999876442211               2467899999999      7899


Q ss_pred             eeeecccccccCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeee
Q 013220          100 VIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVS  179 (447)
Q Consensus       100 Iv~~~~~~~~~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~  179 (447)
                      |+++++++..    +...++||||+.++|.+.+...  ..+++..+..++.|++.||+|||+. ||+|+||+|+||++  
T Consensus        82 iv~~~~~~~~----~~~~~lv~e~~~~~l~~~l~~~--~~~~~~~~~~~~~ql~~aL~~LH~~-~i~H~dl~~~nill--  152 (335)
T PTZ00024         82 IMGLVDVYVE----GDFINLVMDIMASDLKKVVDRK--IRLTESQVKCILLQILNGLNVLHKW-YFMHRDLSPANIFI--  152 (335)
T ss_pred             eeeeeEEEec----CCcEEEEEeccccCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeecccccHHHeEE--
Confidence            9999998874    4689999999988888887643  3488999999999999999999996 99999999999999  


Q ss_pred             cCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEee
Q 013220          180 TIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVD  259 (447)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~D  259 (447)
                                                                                            +....++|+|
T Consensus       153 ----------------------------------------------------------------------~~~~~~kl~d  162 (335)
T PTZ00024        153 ----------------------------------------------------------------------NSKGICKIAD  162 (335)
T ss_pred             ----------------------------------------------------------------------CCCCCEEECC
Confidence                                                                                  3356799999


Q ss_pred             cCcccccc-----------------cccccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCC
Q 013220          260 FGNACRAN-----------------KQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGF  321 (447)
Q Consensus       260 fg~a~~~~-----------------~~~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~  321 (447)
                      ||.+....                 .......++..|+|||.+.+. .++.++|+|||||++|+|++|..||...     
T Consensus       163 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~-----  237 (335)
T PTZ00024        163 FGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGE-----  237 (335)
T ss_pred             ccceeecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC-----
Confidence            99886443                 111123457889999999764 4689999999999999999999999866     


Q ss_pred             CCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCC
Q 013220          322 CEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPE  401 (447)
Q Consensus       322 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~  401 (447)
                       ++...+..+.+.++..+.......... +.+..      +..........       .....+..+.+||.+||+.+|+
T Consensus       238 -~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~-------~~~~~~~~~~~li~~~l~~~P~  302 (335)
T PTZ00024        238 -NEIDQLGRIFELLGTPNEDNWPQAKKL-PLYTE------FTPRKPKDLKT-------IFPNASDDAIDLLQSLLKLNPL  302 (335)
T ss_pred             -CHHHHHHHHHHHhCCCchhhCcchhhc-ccccc------cCcCCcccHHH-------hCcCCChHHHHHHHHHcCCCch
Confidence             345566667776666554321000000 00000      00000000000       1123356788999999999999


Q ss_pred             CCCChHHHhcCccccccc
Q 013220          402 KRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       402 kRpta~elL~hp~f~~~~  419 (447)
                      +|||++|+|.||||+...
T Consensus       303 ~R~s~~~~l~~~~~~~~~  320 (335)
T PTZ00024        303 ERISAKEALKHEYFKSDP  320 (335)
T ss_pred             hccCHHHHhcCcccCCCC
Confidence            999999999999998643

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=4.7e-36  Score=290.06  Aligned_cols=275  Identities=30%  Similarity=0.491  Sum_probs=211.1

Q ss_pred             eEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           38 YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        38 y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      |++.+.||+|++|.||+|.+..+++.||+|++...   ......+..|+++++.+      .|++|+++++++...    
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i~~~~~~~~~~----   70 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKEL------KHPNIVKLLDVIHTE----   70 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhc------CCCCHHHHHhhhhcC----
Confidence            67788999999999999999999999999988764   33345677899999998      789999999998854    


Q ss_pred             ceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          115 QHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       115 ~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      ...++||||++++|.+++.... ..+++..+..++.|++.||++||+. ||+|+||+|+||++                 
T Consensus        71 ~~~~~v~e~~~~~l~~~i~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~-~i~H~~l~~~ni~~-----------------  131 (282)
T cd07829          71 RKLYLVFEYCDMDLKKYLDKRP-GPLSPNLIKSIMYQLLRGLAYCHSH-RILHRDLKPQNILI-----------------  131 (282)
T ss_pred             CceEEEecCcCcCHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCChheEEE-----------------
Confidence            6899999999878988887543 3589999999999999999999996 99999999999999                 


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---cc
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FA  271 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~~  271 (447)
                                                                             +....++|+|||.+......   ..
T Consensus       132 -------------------------------------------------------~~~~~~~l~d~g~~~~~~~~~~~~~  156 (282)
T cd07829         132 -------------------------------------------------------NRDGVLKLADFGLARAFGIPLRTYT  156 (282)
T ss_pred             -------------------------------------------------------cCCCCEEEecCCcccccCCCccccC
Confidence                                                                   34567999999998654332   22


Q ss_pred             cCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          272 EEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       272 ~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      ...++..|+|||.+.+. .++.++|+|||||+++++++|..||...      .....+..+.+..+...+..........
T Consensus       157 ~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (282)
T cd07829         157 HEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGD------SEIDQLFKIFQILGTPTEESWPGVTKLP  230 (282)
T ss_pred             ccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCc------cHHHHHHHHHHHhCCCcHHHHHhhcccc
Confidence            33557889999999876 7899999999999999999999999765      3455556666666666554422221111


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                       .+...  .....   ......       .....+..+.++|.+||..||++||++.+++.||||
T Consensus       231 -~~~~~--~~~~~---~~~~~~-------~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~~p~~  282 (282)
T cd07829         231 -DYKPT--FPKFP---PKDLEK-------VLPRLDPEGIDLLSKMLQYNPAKRISAKEALKHPYF  282 (282)
T ss_pred             -ccccc--ccccC---ccchHH-------hcccccHHHHHHHHHhhccCcccCCCHHHHhhCcCC
Confidence             00000  00000   000000       111236689999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=100.00  E-value=5.5e-36  Score=286.01  Aligned_cols=246  Identities=22%  Similarity=0.365  Sum_probs=197.4

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      +|++.++||.|+||.||++++..++..||+|.++..  ....+.+.+|+.+++.+      .|+||+++++.+..    +
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~----~   70 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKM------KHPNIVAFKESFEA----D   70 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhC------CCCCcceEEEEEEE----C
Confidence            589999999999999999999999999999987532  33456778899999988      78999999998874    3


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ..++++|||+ ++++.+.+.......+++..+..++.|++.||.+||++ ||+|+||||+||++                
T Consensus        71 ~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~-~i~H~dl~p~nili----------------  133 (255)
T cd08219          71 GHLYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEK-RVLHRDIKSKNIFL----------------  133 (255)
T ss_pred             CEEEEEEeeCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhC-CcccCCCCcceEEE----------------
Confidence            6899999999 78898887654445688999999999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---c
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---F  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~  270 (447)
                                                                              +....++|+|||.+......   .
T Consensus       134 --------------------------------------------------------~~~~~~~l~dfg~~~~~~~~~~~~  157 (255)
T cd08219         134 --------------------------------------------------------TQNGKVKLGDFGSARLLTSPGAYA  157 (255)
T ss_pred             --------------------------------------------------------CCCCcEEEcccCcceeeccccccc
Confidence                                                                    33567999999998654332   2


Q ss_pred             ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          271 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      ....++..|+|||++.+..++.++|+||||+++|+|++|..||...+      ....   ...+....            
T Consensus       158 ~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~------~~~~---~~~~~~~~------------  216 (255)
T cd08219         158 CTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANS------WKNL---ILKVCQGS------------  216 (255)
T ss_pred             ccccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCC------HHHH---HHHHhcCC------------
Confidence            23468899999999988889999999999999999999999996542      0111   11110000            


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                ....+...+..+.+||.+||+.||++|||+.++++-
T Consensus       217 --------------------------~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         217 --------------------------YKPLPSHYSYELRSLIKQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             --------------------------CCCCCcccCHHHHHHHHHHHhCCcccCCCHHHHhhc
Confidence                                      001223345678899999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=100.00  E-value=4.3e-36  Score=286.34  Aligned_cols=248  Identities=27%  Similarity=0.453  Sum_probs=198.5

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH------HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA------QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~------~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      +|+..+.||+|++|.||+|.+..++..|++|.+....      ...+.+.+|+++++.+      +|++|+++++.+.. 
T Consensus         1 ~~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~------~h~~i~~~~~~~~~-   73 (258)
T cd06632           1 RWRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKL------QHPNIVQYLGTERE-   73 (258)
T ss_pred             CccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhc------CCCCchheeeeEec-
Confidence            5788899999999999999998889999999875432      2345788899999998      78999999998764 


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                         +...+++|||+ +++|.+.+...  ..+++..+..++.|++.||+|||+. ||+|+||+|+||++            
T Consensus        74 ---~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dl~~~ni~~------------  135 (258)
T cd06632          74 ---EDNLYIFLELVPGGSLAKLLKKY--GSFPEPVIRLYTRQILLGLEYLHDR-NTVHRDIKGANILV------------  135 (258)
T ss_pred             ---CCeEEEEEEecCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEE------------
Confidence               36899999999 78898887643  3488899999999999999999996 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                  +....++|+|||.+......
T Consensus       136 ------------------------------------------------------------~~~~~~kl~d~~~~~~~~~~  155 (258)
T cd06632         136 ------------------------------------------------------------DTNGVVKLADFGMAKQVVEF  155 (258)
T ss_pred             ------------------------------------------------------------CCCCCEEEccCccceecccc
Confidence                                                                        33567999999988654332


Q ss_pred             --cccCCCCCCccChHHhhcCC-CCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCC
Q 013220          270 --FAEEIQTRQYRAPEVILRAG-YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  346 (447)
Q Consensus       270 --~~~~~gt~~y~aPE~l~~~~-~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  346 (447)
                        .....++..|+|||.+.... ++.++|+|||||++|+|++|..||....         ......+.....        
T Consensus       156 ~~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~---------~~~~~~~~~~~~--------  218 (258)
T cd06632         156 SFAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLE---------GVAAVFKIGRSK--------  218 (258)
T ss_pred             ccccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCc---------HHHHHHHHHhcc--------
Confidence              23456889999999997766 8899999999999999999999996432         111111110000        


Q ss_pred             CCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          347 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                                                   ....++...+..+.+|+.+||+.+|.+|||+.++|.|||+
T Consensus       219 -----------------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~~~~  258 (258)
T cd06632         219 -----------------------------ELPPIPDHLSDEAKDFILKCLQRDPSLRPTAAELLEHPFV  258 (258)
T ss_pred             -----------------------------cCCCcCCCcCHHHHHHHHHHhhcCcccCcCHHHHhcCCCC
Confidence                                         0011233456788999999999999999999999999996

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=4.3e-37  Score=288.42  Aligned_cols=268  Identities=26%  Similarity=0.412  Sum_probs=210.9

Q ss_pred             eEEEEe-ecccCceEEEEEEeCCCCeEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           38 YIAQRK-LGWGQFSIVWLAYDTRTSSYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        38 y~l~~~-lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      |++... ||+|+|+.|--|....++..||||++.+.. .....+++|++++...+     +|+||+.+++.|.+.    .
T Consensus        79 YkLt~e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cq-----gh~nilqLiefFEdd----~  149 (463)
T KOG0607|consen   79 YKLTSELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQ-----GHKNILQLIEFFEDD----T  149 (463)
T ss_pred             HHhHHHHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhc-----CCccHHHHHHHhccc----c
Confidence            666554 899999999999999999999999887765 45668999999998887     999999999999864    7


Q ss_pred             eEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          116 HLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       116 ~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      .+|+|||.| ||.|.+.+....  .|++.++..+...|+.||.|||.+ ||.|||+||+|||-...              
T Consensus       150 ~FYLVfEKm~GGplLshI~~~~--~F~E~EAs~vvkdia~aLdFlH~k-gIAHRDlKPENiLC~~p--------------  212 (463)
T KOG0607|consen  150 RFYLVFEKMRGGPLLSHIQKRK--HFNEREASRVVKDIASALDFLHTK-GIAHRDLKPENILCESP--------------  212 (463)
T ss_pred             eEEEEEecccCchHHHHHHHhh--hccHHHHHHHHHHHHHHHHHHhhc-CcccccCCccceeecCC--------------
Confidence            899999999 999999887654  499999999999999999999998 99999999999997442              


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccc--c-----
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA--N-----  267 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~--~-----  267 (447)
                                                                             +.-.-+||+||.+..-+  .     
T Consensus       213 -------------------------------------------------------n~vsPvKiCDfDLgSg~k~~~~~sp  237 (463)
T KOG0607|consen  213 -------------------------------------------------------NKVSPVKICDFDLGSGIKLNNDCSP  237 (463)
T ss_pred             -------------------------------------------------------CCcCceeeeccccccccccCCCCCC
Confidence                                                                   22344899999877321  1     


Q ss_pred             ---cccccCCCCCCccChHHhhc-----CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCC
Q 013220          268 ---KQFAEEIQTRQYRAPEVILR-----AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMP  339 (447)
Q Consensus       268 ---~~~~~~~gt~~y~aPE~l~~-----~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~  339 (447)
                         ......+|+-.|||||+..-     ..|+.++|.||||||+|-|+.|..||.+.=... +                 
T Consensus       238 astP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~d-C-----------------  299 (463)
T KOG0607|consen  238 ASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGAD-C-----------------  299 (463)
T ss_pred             CCCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccCCc-C-----------------
Confidence               12334578899999999752     247899999999999999999999998762110 0                 


Q ss_pred             HHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChh----hHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          340 RKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSET----DAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                       - +.++.-++.+-             ..-++.|....+.||..    ++.+..|+++.+|..|+..|.+|.++|+|||+
T Consensus       300 -G-WdrGe~Cr~CQ-------------~~LFesIQEGkYeFPdkdWahIS~eakdlisnLlvrda~~rlsa~~vlnhPw~  364 (463)
T KOG0607|consen  300 -G-WDRGEVCRVCQ-------------NKLFESIQEGKYEFPDKDWAHISSEAKDLISNLLVRDAKQRLSAAQVLNHPWV  364 (463)
T ss_pred             -C-ccCCCccHHHH-------------HHHHHHHhccCCcCChhhhHHhhHHHHHHHHHHHhccHHhhhhhhhccCCccc
Confidence             0 01111111110             00145555566666664    58889999999999999999999999999999


Q ss_pred             cccc
Q 013220          416 SLRN  419 (447)
Q Consensus       416 ~~~~  419 (447)
                      .-..
T Consensus       365 ~~~~  368 (463)
T KOG0607|consen  365 QRCA  368 (463)
T ss_pred             cccc
Confidence            8654

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=100.00  E-value=2.4e-36  Score=289.70  Aligned_cols=246  Identities=29%  Similarity=0.445  Sum_probs=197.5

Q ss_pred             ecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEE
Q 013220           44 LGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCM  119 (447)
Q Consensus        44 lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~l  119 (447)
                      ||.|++|.||+|++..++..||+|++....    ...+.+.+|+++++.+      +|+||+++++.+..    +...++
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~----~~~~~l   70 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEEC------NHPFIVKLYRTFKD----KKYIYM   70 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhC------CCCCEeeeeeeEEc----CCccEE
Confidence            699999999999999889999999876432    3346788899999999      78999999998764    468999


Q ss_pred             EEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCC
Q 013220          120 VLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER  198 (447)
Q Consensus       120 vmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~  198 (447)
                      +|||+ +++|.+.+...  ..+++..+..++.|++.||+|||++ |++|+||+|+||++                     
T Consensus        71 v~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~i~~~l~~lH~~-~~~h~dl~~~nilv---------------------  126 (262)
T cd05572          71 LMEYCLGGELWTILRDR--GLFDEYTARFYIACVVLAFEYLHNR-GIIYRDLKPENLLL---------------------  126 (262)
T ss_pred             EEecCCCCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHhhC-CcccCCCCHHHEEE---------------------
Confidence            99999 88999888654  3488999999999999999999996 99999999999999                     


Q ss_pred             CCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--cccCCCC
Q 013220          199 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FAEEIQT  276 (447)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--~~~~~gt  276 (447)
                                                                         +....++|+|||.+......  .....++
T Consensus       127 ---------------------------------------------------~~~~~~~l~df~~~~~~~~~~~~~~~~~~  155 (262)
T cd05572         127 ---------------------------------------------------DSNGYVKLVDFGFAKKLKSGQKTWTFCGT  155 (262)
T ss_pred             ---------------------------------------------------cCCCCEEEeeCCcccccCcccccccccCC
Confidence                                                               33567999999998755432  2234678


Q ss_pred             CCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhccc
Q 013220          277 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH  356 (447)
Q Consensus       277 ~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  356 (447)
                      ..|+|||.+.+..++.++|+|||||++|+|++|..||.....       ........... .                  
T Consensus       156 ~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-------~~~~~~~~~~~-~------------------  209 (262)
T cd05572         156 PEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDE-------DPMEIYNDILK-G------------------  209 (262)
T ss_pred             cCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCC-------CHHHHHHHHhc-c------------------
Confidence            999999999888889999999999999999999999976531       01111111100 0                  


Q ss_pred             chhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCC-----hHHHhcCcccccc
Q 013220          357 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLR  418 (447)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpt-----a~elL~hp~f~~~  418 (447)
                                        .....++...+..+.++|.+||+.||++|||     ++|+++||||++.
T Consensus       210 ------------------~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~  258 (262)
T cd05572         210 ------------------NGKLEFPNYIDKAAKDLIKQLLRRNPEERLGNLKGGIKDIKKHKWFNGF  258 (262)
T ss_pred             ------------------CCCCCCCcccCHHHHHHHHHHccCChhhCcCCcccCHHHHhcChhhhCC
Confidence                              0111233334678999999999999999999     9999999999864

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=100.00  E-value=5.4e-36  Score=294.76  Aligned_cols=254  Identities=26%  Similarity=0.391  Sum_probs=201.0

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh----HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA----AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~----~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      .+|.+.+.||+|+||+||+|++..+++.||+|.+...    ....+.+.+|+++++.+      +|+||+++++++... 
T Consensus        15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l------~h~niv~~~~~~~~~-   87 (307)
T cd06607          15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQL------RHPNTIEYKGCYLRE-   87 (307)
T ss_pred             hhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhC------CCCCEEEEEEEEEeC-
Confidence            5799999999999999999999889999999987532    23345688899999998      889999999998753 


Q ss_pred             CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          112 PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       112 ~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                         +..++||||+.+++.+.+.... ..+++..+..++.|++.||.|||+. ||+|+||+|+||++              
T Consensus        88 ---~~~~lv~e~~~g~l~~~~~~~~-~~l~~~~~~~~~~ql~~~L~~LH~~-~i~H~dl~p~nIl~--------------  148 (307)
T cd06607          88 ---HTAWLVMEYCLGSASDILEVHK-KPLQEVEIAAICHGALQGLAYLHSH-ERIHRDIKAGNILL--------------  148 (307)
T ss_pred             ---CeEEEEHHhhCCCHHHHHHHcc-cCCCHHHHHHHHHHHHHHHHHHHHC-CceecCCCcccEEE--------------
Confidence               6789999999878777765433 4589999999999999999999996 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccc
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA  271 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~  271 (447)
                                                                                +....++|+|||++..... ..
T Consensus       149 ----------------------------------------------------------~~~~~~kL~dfg~~~~~~~-~~  169 (307)
T cd06607         149 ----------------------------------------------------------TEPGTVKLADFGSASLVSP-AN  169 (307)
T ss_pred             ----------------------------------------------------------CCCCCEEEeecCcceecCC-CC
Confidence                                                                      3356799999998865432 23


Q ss_pred             cCCCCCCccChHHhh---cCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          272 EEIQTRQYRAPEVIL---RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       272 ~~~gt~~y~aPE~l~---~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      ...++..|+|||++.   ...++.++|+|||||++|+|++|..||...+      .   ......+....+..       
T Consensus       170 ~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~------~---~~~~~~~~~~~~~~-------  233 (307)
T cd06607         170 SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN------A---MSALYHIAQNDSPT-------  233 (307)
T ss_pred             CccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCcc------H---HHHHHHHhcCCCCC-------
Confidence            456788999999884   3457899999999999999999999996542      1   11111111000000       


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccC
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~  420 (447)
                                                    ..+...+..+.++|.+||..||++||++.+++.||||.....
T Consensus       234 ------------------------------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~~  275 (307)
T cd06607         234 ------------------------------LSSNDWSDYFRNFVDSCLQKIPQDRPSSEELLKHRFVLRERP  275 (307)
T ss_pred             ------------------------------CCchhhCHHHHHHHHHHhcCChhhCcCHHHHhcChhhcccCC
Confidence                                          001223567899999999999999999999999999987553

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=100.00  E-value=8e-36  Score=285.68  Aligned_cols=248  Identities=29%  Similarity=0.463  Sum_probs=198.7

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH---hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ---FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~---~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      ||++.+.||+|+||.||+|.+..++..|++|+++....   ....+.+|+++++.+      +|++|+++++.+..    
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l------~~~~i~~~~~~~~~----   70 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELL------KHPNLVKYYGVEVH----   70 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhC------CCCChhheeeeEec----
Confidence            69999999999999999999988999999998775543   567889999999999      78899999998764    


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      ....++|+||+ +++|.+.+...  ..+++..+..++.|++.||+|||+. ||+|+||+|+||++               
T Consensus        71 ~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lh~~-~i~H~dl~~~nil~---------------  132 (264)
T cd06626          71 REKVYIFMEYCSGGTLEELLEHG--RILDEHVIRVYTLQLLEGLAYLHSH-GIVHRDIKPANIFL---------------  132 (264)
T ss_pred             CCEEEEEEecCCCCcHHHHHhhc--CCCChHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEE---------------
Confidence            46899999999 78898887653  2378889999999999999999996 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccc-
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA-  271 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~-  271 (447)
                                                                               +....++|+|||.+........ 
T Consensus       133 ---------------------------------------------------------~~~~~~kl~d~g~~~~~~~~~~~  155 (264)
T cd06626         133 ---------------------------------------------------------DHNGVIKLGDFGCAVKLKNNTTT  155 (264)
T ss_pred             ---------------------------------------------------------CCCCCEEEcccccccccCCCCCc
Confidence                                                                     3356799999999865432211 


Q ss_pred             ------cCCCCCCccChHHhhcCC---CCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh
Q 013220          272 ------EEIQTRQYRAPEVILRAG---YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  342 (447)
Q Consensus       272 ------~~~gt~~y~aPE~l~~~~---~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (447)
                            ...++..|+|||.+.+..   ++.++|+|||||++|++++|+.||...+      ..  ......+....+   
T Consensus       156 ~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~------~~--~~~~~~~~~~~~---  224 (264)
T cd06626         156 MGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELD------NE--FQIMFHVGAGHK---  224 (264)
T ss_pred             ccccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCc------ch--HHHHHHHhcCCC---
Confidence                  235678999999998765   7899999999999999999999996442      11  111111111000   


Q ss_pred             hhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCCh--hhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSE--TDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                                                         +.++.  .++..+.+||.+||+.+|.+|||+.|++.|||+
T Consensus       225 -----------------------------------~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~i~~~~~~  264 (264)
T cd06626         225 -----------------------------------PPIPDSLQLSPEGKDFLDRCLESDPKKRPTASELLQHPFV  264 (264)
T ss_pred             -----------------------------------CCCCcccccCHHHHHHHHHHccCCcccCCCHHHHhcCCCC
Confidence                                               01111  235678899999999999999999999999996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=100.00  E-value=3.6e-36  Score=294.32  Aligned_cols=260  Identities=28%  Similarity=0.460  Sum_probs=205.6

Q ss_pred             cccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh-HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecc
Q 013220           27 VRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA-AQFAQAALHEIEVLSAVADGDPSNEKCVIRLID  105 (447)
Q Consensus        27 ~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~  105 (447)
                      +.+|+..  ++|.+.+.||+|+||.||++.+..++..||+|.+... ....+.+.+|+.+++.+      .|+||+++++
T Consensus        12 ~~~~~~~--~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l------~hp~i~~~~~   83 (293)
T cd06647          12 VSVGDPK--KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMREN------KHPNIVNYLD   83 (293)
T ss_pred             eeccCch--hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhc------CCCCeeehhh
Confidence            4556665  6899999999999999999998888999999987543 23346788899999888      7899999999


Q ss_pred             cccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCC
Q 013220          106 HFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       106 ~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~  184 (447)
                      .+...    ...|+||||+ +++|.+.+..   ..+++..+..++.|++.||+|||++ |++|+|++|+||++.      
T Consensus        84 ~~~~~----~~~~lv~e~~~~~~L~~~~~~---~~l~~~~~~~i~~~l~~al~~LH~~-gi~H~dL~p~Nili~------  149 (293)
T cd06647          84 SYLVG----DELWVVMEYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHSN-QVIHRDIKSDNILLG------  149 (293)
T ss_pred             eeeeC----CcEEEEEecCCCCcHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHhC-CEeeccCCHHHEEEc------
Confidence            88753    6899999999 8899888754   2478889999999999999999996 999999999999993      


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                        ....++|+|||++.
T Consensus       150 ------------------------------------------------------------------~~~~~kL~dfg~~~  163 (293)
T cd06647         150 ------------------------------------------------------------------MDGSVKLTDFGFCA  163 (293)
T ss_pred             ------------------------------------------------------------------CCCCEEEccCccee
Confidence                                                                              35679999999875


Q ss_pred             ccccc---cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          265 RANKQ---FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       265 ~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                      .....   .....++..|+|||.+.+..++.++|+|||||++|++++|..||...+...      .   +... +..+. 
T Consensus       164 ~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~------~---~~~~-~~~~~-  232 (293)
T cd06647         164 QITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLR------A---LYLI-ATNGT-  232 (293)
T ss_pred             cccccccccccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChhh------h---eeeh-hcCCC-
Confidence            43322   223467889999999988888999999999999999999999997543110      0   0000 00000 


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                        .....+..++..+.+||.+||..+|++||++.+++.||||+..+
T Consensus       233 ----------------------------------~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~h~~~~~~~  276 (293)
T cd06647         233 ----------------------------------PELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHPFLKIAK  276 (293)
T ss_pred             ----------------------------------CCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcCHHHhcCc
Confidence                                              00011223456788999999999999999999999999998655

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=1e-35  Score=286.43  Aligned_cols=250  Identities=28%  Similarity=0.421  Sum_probs=194.3

Q ss_pred             eEEEEeecccCceEEEEEEeCCCCeEEEEEEechh-HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcce
Q 013220           38 YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA-AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQH  116 (447)
Q Consensus        38 y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~  116 (447)
                      +.....||+|+||.||+|++..++..|++|.+... ....+.+.+|+++++.+      .|+||+++++++..    +..
T Consensus        10 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~----~~~   79 (268)
T cd06624          10 NGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYL------KHRNIVQYLGSDSE----NGF   79 (268)
T ss_pred             CCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhc------CCCCeeeeeeeecc----CCE
Confidence            33445899999999999999889999999976543 33456788999999998      78999999998874    368


Q ss_pred             EEEEEecc-cccHHHHHHhhccCCC--CHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          117 LCMVLEFL-GDSLLRLIKYSRYKGL--ELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       117 ~~lvmE~~-~~~L~~~~~~~~~~~l--~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      .+++|||+ +++|.+.+.... ..+  ++..+..++.|++.||+|||++ ||+||||||.||++..              
T Consensus        80 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~~qi~~al~~lH~~-~i~h~dl~p~nil~~~--------------  143 (268)
T cd06624          80 FKIFMEQVPGGSLSALLRSKW-GPLKDNEQTIIFYTKQILEGLKYLHDN-QIVHRDIKGDNVLVNT--------------  143 (268)
T ss_pred             EEEEEecCCCCCHHHHHHHhc-ccCCCcHHHHHHHHHHHHHHHHHHHHC-CEeecCCCHHHEEEcC--------------
Confidence            99999999 789998876532 234  7788889999999999999996 9999999999999932              


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc---cc
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QF  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~---~~  270 (447)
                                                                               ....++|+|||.+.....   ..
T Consensus       144 ---------------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~  166 (268)
T cd06624         144 ---------------------------------------------------------YSGVVKISDFGTSKRLAGINPCT  166 (268)
T ss_pred             ---------------------------------------------------------CCCeEEEecchhheecccCCCcc
Confidence                                                                     134699999998864422   12


Q ss_pred             ccCCCCCCccChHHhhcCC--CCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          271 AEEIQTRQYRAPEVILRAG--YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~--~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      ....++..|+|||.+.+..  ++.++|+|||||++|+|++|..||......     ...   ....              
T Consensus       167 ~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~-----~~~---~~~~--------------  224 (268)
T cd06624         167 ETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEP-----QAA---MFKV--------------  224 (268)
T ss_pred             ccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccCh-----hhh---Hhhh--------------
Confidence            2345789999999987643  788999999999999999999999643210     000   0000              


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                                             ........++...++++.+|+.+||+.+|.+|||+.|++.||||
T Consensus       225 -----------------------~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~~~~  268 (268)
T cd06624         225 -----------------------GMFKIHPEIPESLSAEAKNFILRCFEPDPDKRASAHDLLQDPFL  268 (268)
T ss_pred             -----------------------hhhccCCCCCcccCHHHHHHHHHHcCCCchhCCCHHHHHhCCCC
Confidence                                   00011112344556789999999999999999999999999997

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=100.00  E-value=8.2e-36  Score=284.46  Aligned_cols=250  Identities=25%  Similarity=0.413  Sum_probs=199.3

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      +|.+.+.||.|+||.||+|.+..++..+|+|.+....   ...+.+.+|+++++.+      +|+||+++++.+..    
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~------~h~~i~~~~~~~~~----   70 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKM------KHPNIVTFFASFQE----   70 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhC------CCCChhhhhheecc----
Confidence            5899999999999999999999999999999876542   2345678899999999      78999999998864    


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      ....+++|||+ +++|.+.+.......+++..+..++.|++.||+|||+. +++|+|+||+||++..             
T Consensus        71 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~-~i~H~dl~~~nil~~~-------------  136 (257)
T cd08225          71 NGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDR-KILHRDIKSQNIFLSK-------------  136 (257)
T ss_pred             CCeEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC-CcccccCCHHHEEEcC-------------
Confidence            36899999999 88998888654444578999999999999999999996 9999999999999933             


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc--
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF--  270 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~--  270 (447)
                                                                                ....++|+|||.+.......  
T Consensus       137 ----------------------------------------------------------~~~~~~l~d~~~~~~~~~~~~~  158 (257)
T cd08225         137 ----------------------------------------------------------NGMVAKLGDFGIARQLNDSMEL  158 (257)
T ss_pred             ----------------------------------------------------------CCCeEEecccccchhccCCccc
Confidence                                                                      12357999999886544321  


Q ss_pred             -ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 -AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 -~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                       ....|+..|+|||.+....++.++|+|||||+++++++|..||...+      .   ...+.+.....           
T Consensus       159 ~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~------~---~~~~~~~~~~~-----------  218 (257)
T cd08225         159 AYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNN------L---HQLVLKICQGY-----------  218 (257)
T ss_pred             ccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCcc------H---HHHHHHHhccc-----------
Confidence             22357889999999988888999999999999999999999996432      1   11111111000           


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                                                 ........+..+.++|.+||+.+|++|||+.++++||||
T Consensus       219 ---------------------------~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~~~~  257 (257)
T cd08225         219 ---------------------------FAPISPNFSRDLRSLISQLFKVSPRDRPSITSILKRPFL  257 (257)
T ss_pred             ---------------------------CCCCCCCCCHHHHHHHHHHhccChhhCcCHHHHhhCCCC
Confidence                                       001122345689999999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=5.7e-36  Score=288.44  Aligned_cols=246  Identities=18%  Similarity=0.297  Sum_probs=191.1

Q ss_pred             CCceEEEEeecccCceEEEEEEeC---CCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDT---RTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~---~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      ..+|++.+.||+|+||.||+|.+.   ..+..||+|.++...  .....+.+|+.+++.+      .|+||+++++.+..
T Consensus         4 ~~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~   77 (266)
T cd05064           4 NKSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQF------DHSNIVRLEGVITR   77 (266)
T ss_pred             hHHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcC------CCCCcCeEEEEEec
Confidence            468999999999999999999764   446789999877542  3345678899999888      78999999998874


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                          +...++||||+ +++|.+++.... ..+++..+..++.|++.||+|||+. |++||||||+||++           
T Consensus        78 ----~~~~~lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~~i~~al~~lH~~-~iiH~dikp~nili-----------  140 (266)
T cd05064          78 ----GNTMMIVTEYMSNGALDSFLRKHE-GQLVAGQLMGMLPGLASGMKYLSEM-GYVHKGLAAHKVLV-----------  140 (266)
T ss_pred             ----CCCcEEEEEeCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHHC-CEeeccccHhhEEE-----------
Confidence                46899999999 778887776432 3588999999999999999999996 99999999999999           


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                   +.+..++++|||.+.....
T Consensus       141 -------------------------------------------------------------~~~~~~~l~dfg~~~~~~~  159 (266)
T cd05064         141 -------------------------------------------------------------NSDLVCKISGFRRLQEDKS  159 (266)
T ss_pred             -------------------------------------------------------------cCCCcEEECCCcccccccc
Confidence                                                                         3356789999998754321


Q ss_pred             cc--c--cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhh
Q 013220          269 QF--A--EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  343 (447)
Q Consensus       269 ~~--~--~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  343 (447)
                      ..  .  ...++..|+|||.+.+..++.++|||||||++|++++ |..||...+      .......+.+   .      
T Consensus       160 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~------~~~~~~~~~~---~------  224 (266)
T cd05064         160 EAIYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMS------GQDVIKAVED---G------  224 (266)
T ss_pred             cchhcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCC------HHHHHHHHHC---C------
Confidence            11  1  1234578999999998899999999999999999775 999997542      1111111100   0      


Q ss_pred             hCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          344 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                      .....+...+..+.+++.+||+.+|++|||++++++
T Consensus       225 --------------------------------~~~~~~~~~~~~~~~li~~c~~~~p~~RP~~~~i~~  260 (266)
T cd05064         225 --------------------------------FRLPAPRNCPNLLHQLMLDCWQKERGERPRFSQIHS  260 (266)
T ss_pred             --------------------------------CCCCCCCCCCHHHHHHHHHHcCCCchhCCCHHHHHH
Confidence                                            001123345668899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=100.00  E-value=2.3e-36  Score=300.33  Aligned_cols=285  Identities=21%  Similarity=0.315  Sum_probs=194.8

Q ss_pred             Eeeccc--CceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcce
Q 013220           42 RKLGWG--QFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQH  116 (447)
Q Consensus        42 ~~lG~G--~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~  116 (447)
                      ++||.|  +||+||+|++..+++.||+|+.....   ...+.+.+|+.+++.+      +|+||++++++|..    +..
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l------~h~niv~~~~~~~~----~~~   73 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFF------RHPNIMTSWTVFTT----GSW   73 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhC------CCCCcceEeeeEec----CCc
Confidence            456666  89999999999999999999876432   2345778888888888      88999999999885    368


Q ss_pred             EEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCC
Q 013220          117 LCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI  195 (447)
Q Consensus       117 ~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~  195 (447)
                      .++||||+ ++++.+++.......+++..+..++.|++.||+|||++ ||+||||||+||++.                 
T Consensus        74 ~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~-~ivHrDlkp~Nill~-----------------  135 (328)
T cd08226          74 LWVISPFMAYGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQN-GYIHRNIKASHILIS-----------------  135 (328)
T ss_pred             eEEEEecccCCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEe-----------------
Confidence            99999999 78898888765445688999999999999999999996 999999999999993                 


Q ss_pred             cCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc---c---
Q 013220          196 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---Q---  269 (447)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~---~---  269 (447)
                                                                             ....++++||+.+.....   .   
T Consensus       136 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  160 (328)
T cd08226         136 -------------------------------------------------------GDGLVSLSGLSHLYSLVRNGQKAKV  160 (328)
T ss_pred             -------------------------------------------------------CCCcEEEechHHHhhhhccCccccc
Confidence                                                                   345688888875432211   0   


Q ss_pred             ----cccCCCCCCccChHHhhcC--CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCC-HHh
Q 013220          270 ----FAEEIQTRQYRAPEVILRA--GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMP-RKI  342 (447)
Q Consensus       270 ----~~~~~gt~~y~aPE~l~~~--~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~  342 (447)
                          .....++..|+|||++.+.  .++.++|||||||++|+|++|..||...+.      .   ......+...+ ..+
T Consensus       161 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~------~---~~~~~~~~~~~~~~~  231 (328)
T cd08226         161 VYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDMLR------T---QMLLQKLKGPPYSPL  231 (328)
T ss_pred             cccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcCh------H---HHHHHHhcCCCCCCc
Confidence                0111345679999999764  478999999999999999999999975431      1   11222221111 110


Q ss_pred             hhC--CCCccchhcccchh-----hhhhhcccCchhHHhh--hhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCc
Q 013220          343 AIG--GAQSKDYFDRHGDL-----KRIRRLKFWSLDRLLV--DKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP  413 (447)
Q Consensus       343 ~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp  413 (447)
                      ...  ..............     ........  ......  .........+..+.+||++||+.||++|||++|+|+||
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~~~  309 (328)
T cd08226         232 DITTFPCEESRMKNSQSGVDSGIGESVVAAGM--TQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPSASSLLSHA  309 (328)
T ss_pred             cccccchhhhhhccchhhhhcccccchhcccc--ccccccccccchhhhhhhHHHHHHHHHHccCCcccCCCHHHHhhCH
Confidence            000  00000000000000     00000000  000000  01112334677899999999999999999999999999


Q ss_pred             ccccccC
Q 013220          414 WLSLRNS  420 (447)
Q Consensus       414 ~f~~~~~  420 (447)
                      ||+....
T Consensus       310 ~~~~~~~  316 (328)
T cd08226         310 FFKQVKE  316 (328)
T ss_pred             HHHHHHH
Confidence            9987543

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=7.8e-36  Score=286.84  Aligned_cols=245  Identities=25%  Similarity=0.375  Sum_probs=192.5

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      .++|++.++||+|+||+||+|++..+ ..||+|.++........+.+|+++++.+      +|++|+++++.+..     
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~~~-~~valK~~~~~~~~~~~~~~E~~~l~~l------~~~~i~~~~~~~~~-----   72 (262)
T cd05071           5 RESLRLEVKLGQGCFGEVWMGTWNGT-TRVAIKTLKPGTMSPEAFLQEAQVMKKL------RHEKLVQLYAVVSE-----   72 (262)
T ss_pred             hHHeeEeeecCCCCCCcEEEEEecCC-ceEEEEecccCccCHHHHHHHHHHHHhC------CCCCcceEEEEECC-----
Confidence            47899999999999999999987655 4599998876544456788999999998      78899999887643     


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ...++||||+ +++|.+.+.......+++..+..++.|++.||+|||+. +|+|+||||+||++.               
T Consensus        73 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~-~i~H~dl~p~Nill~---------------  136 (262)
T cd05071          73 EPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM-NYVHRDLRAANILVG---------------  136 (262)
T ss_pred             CCcEEEEEcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHC-CccccccCcccEEEc---------------
Confidence            4579999999 78998888654444578899999999999999999996 999999999999993               


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccc--
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA--  271 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~--  271 (447)
                                                                               ....++|+|||.+........  
T Consensus       137 ---------------------------------------------------------~~~~~~L~dfg~~~~~~~~~~~~  159 (262)
T cd05071         137 ---------------------------------------------------------ENLVCKVADFGLARLIEDNEYTA  159 (262)
T ss_pred             ---------------------------------------------------------CCCcEEeccCCceeecccccccc
Confidence                                                                     356799999999865443221  


Q ss_pred             --cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          272 --EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       272 --~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                        ...++..|+|||...+..++.++|+|||||++|+|++ |..||....      .......+.   ...          
T Consensus       160 ~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~------~~~~~~~~~---~~~----------  220 (262)
T cd05071         160 RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV------NREVLDQVE---RGY----------  220 (262)
T ss_pred             ccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC------hHHHHHHHh---cCC----------
Confidence              1235678999999988889999999999999999999 888886542      111111110   000          


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                  ....+...+..+.+++.+||+.||++|||++++++
T Consensus       221 ----------------------------~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~~~~  255 (262)
T cd05071         221 ----------------------------RMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQA  255 (262)
T ss_pred             ----------------------------CCCCccccCHHHHHHHHHHccCCcccCCCHHHHHH
Confidence                                        00122344668899999999999999999999874

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.6e-36  Score=290.08  Aligned_cols=254  Identities=26%  Similarity=0.439  Sum_probs=200.8

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      .|++.+.||.|+||.||+|.+..++..||+|++...  ......+.+|+++++.+.+.   .|++|+++++++..    +
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~---~~~~vi~~~~~~~~----~   74 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQS---QPPNITKYYGSYLK----G   74 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccC---CCCCeeeEeeeeee----C
Confidence            488899999999999999999999999999987643  23345688899999999542   58999999998864    4


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ...++||||+ +++|.+++..   ..+++..+..++.|++.||.|||+. ||+|+||+|+||++.               
T Consensus        75 ~~~~lv~e~~~~~~L~~~~~~---~~l~~~~~~~i~~~i~~~l~~lh~~-~i~H~dl~p~ni~i~---------------  135 (277)
T cd06917          75 PRLWIIMEYAEGGSVRTLMKA---GPIAEKYISVIIREVLVALKYIHKV-GVIHRDIKAANILVT---------------  135 (277)
T ss_pred             CEEEEEEecCCCCcHHHHHHc---cCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCcCHHHEEEc---------------
Confidence            6899999999 8888887754   2588999999999999999999996 999999999999993               


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---c
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---F  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~  270 (447)
                                                                               ....++|+|||.+......   .
T Consensus       136 ---------------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~  158 (277)
T cd06917         136 ---------------------------------------------------------NTGNVKLCDFGVAALLNQNSSKR  158 (277)
T ss_pred             ---------------------------------------------------------CCCCEEEccCCceeecCCCcccc
Confidence                                                                     3567999999998654432   2


Q ss_pred             ccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 AEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      ....|+..|+|||.+.+. .++.++|+|||||++|+|++|..||......         ..+..+....+.         
T Consensus       159 ~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~---------~~~~~~~~~~~~---------  220 (277)
T cd06917         159 STFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDAF---------RAMMLIPKSKPP---------  220 (277)
T ss_pred             ccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCChh---------hhhhccccCCCC---------
Confidence            234688899999998754 5689999999999999999999999654210         000000000000         


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCCh-hhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccC
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSE-TDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~  420 (447)
                                                   .++. ..+.++.+|+.+||+.||++|||+.+++.||||+....
T Consensus       221 -----------------------------~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~il~~~~~~~~~~  263 (277)
T cd06917         221 -----------------------------RLEDNGYSKLLREFVAACLDEEPKERLSAEELLKSKWIKAHSK  263 (277)
T ss_pred             -----------------------------CCCcccCCHHHHHHHHHHcCCCcccCcCHHHHhhChHhhcccc
Confidence                                         0111 13568889999999999999999999999999987654

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=100.00  E-value=9.9e-36  Score=284.79  Aligned_cols=254  Identities=30%  Similarity=0.487  Sum_probs=206.0

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      +|.+.+.||.|++|.||+|++..+++.|++|.+....  .....+.+|++.+..+      .|++|+++++.+...    
T Consensus         2 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~~----   71 (264)
T cd06623           2 DLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSC------ESPYVVKCYGAFYKE----   71 (264)
T ss_pred             cceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhc------CCCCeeeEEEEEccC----
Confidence            6899999999999999999999999999999876543  3456788999999999      688999999998754    


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh-hCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR-ELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~-~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      ...++||||+ +++|.+.+...  ..+++..+..++.|++.||+|||+ . |++|+||+|+||++               
T Consensus        72 ~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~l~~~l~~lh~~~-~~~H~~l~~~ni~~---------------  133 (264)
T cd06623          72 GEISIVLEYMDGGSLADLLKKV--GKIPEPVLAYIARQILKGLDYLHTKR-HIIHRDIKPSNLLI---------------  133 (264)
T ss_pred             CeEEEEEEecCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHhccC-CCccCCCCHHHEEE---------------
Confidence            7899999999 78999888654  458999999999999999999999 8 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccc-
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA-  271 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~-  271 (447)
                                                                               +....++|+|||.+........ 
T Consensus       134 ---------------------------------------------------------~~~~~~~l~df~~~~~~~~~~~~  156 (264)
T cd06623         134 ---------------------------------------------------------NSKGEVKIADFGISKVLENTLDQ  156 (264)
T ss_pred             ---------------------------------------------------------CCCCCEEEccCccceecccCCCc
Confidence                                                                     3456799999999875543222 


Q ss_pred             --cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          272 --EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       272 --~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                        ...++..|+|||.+....++.++|+||||+++|+|++|..||.....      ....+....+.....          
T Consensus       157 ~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~------~~~~~~~~~~~~~~~----------  220 (264)
T cd06623         157 CNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQ------PSFFELMQAICDGPP----------  220 (264)
T ss_pred             ccceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccc------cCHHHHHHHHhcCCC----------
Confidence              34578899999999888889999999999999999999999966531      011111111111000          


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChh-hHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSET-DAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                  ...+.. .+..+.++|.+||..+|++|||+.++++||||+..+
T Consensus       221 ----------------------------~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~ll~~~~~~~~~  263 (264)
T cd06623         221 ----------------------------PSLPAEEFSPEFRDFISACLQKDPKKRPSAAELLQHPFIKKAD  263 (264)
T ss_pred             ----------------------------CCCCcccCCHHHHHHHHHHccCChhhCCCHHHHHhCHHHHhcc
Confidence                                        112223 567899999999999999999999999999997643

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.7e-36  Score=286.26  Aligned_cols=248  Identities=27%  Similarity=0.409  Sum_probs=189.6

Q ss_pred             EeecccCceEEEEEEeCCCCeEEEEEEechhHHh----HHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceE
Q 013220           42 RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQF----AQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHL  117 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~----~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~  117 (447)
                      +.||.|+||.||+|.+..+++.||+|++......    ...+..|..++....     .|+||+++++++..    +...
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~-----~~~~i~~~~~~~~~----~~~~   72 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQG-----ESPYVAKLYYSFQS----KDYL   72 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcC-----CCCCeeeeeeeEEc----CCeE
Confidence            5689999999999999989999999988654321    123344444443332     78999999999874    4689


Q ss_pred             EEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCc
Q 013220          118 CMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL  196 (447)
Q Consensus       118 ~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~  196 (447)
                      |+||||+ +++|.+++...  ..+++..+..++.|++.||.|||+. ||+|+||+|+||++                   
T Consensus        73 ~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~lH~~-~i~H~dl~p~nil~-------------------  130 (260)
T cd05611          73 YLVMEYLNGGDCASLIKTL--GGLPEDWAKQYIAEVVLGVEDLHQR-GIIHRDIKPENLLI-------------------  130 (260)
T ss_pred             EEEEeccCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHeEE-------------------
Confidence            9999999 88999888654  3588999999999999999999996 99999999999999                   


Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccccCCCC
Q 013220          197 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQT  276 (447)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~gt  276 (447)
                                                                           +....++|+|||++..... .....++
T Consensus       131 -----------------------------------------------------~~~~~~~l~dfg~~~~~~~-~~~~~~~  156 (260)
T cd05611         131 -----------------------------------------------------DQTGHLKLTDFGLSRNGLE-NKKFVGT  156 (260)
T ss_pred             -----------------------------------------------------CCCCcEEEeecccceeccc-cccCCCC
Confidence                                                                 3356799999998865332 2344678


Q ss_pred             CCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhccc
Q 013220          277 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH  356 (447)
Q Consensus       277 ~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  356 (447)
                      ..|+|||.+.+..++.++|+||||+++|+|++|..||...+      .......+.......                  
T Consensus       157 ~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~------~~~~~~~~~~~~~~~------------------  212 (260)
T cd05611         157 PDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAET------PDAVFDNILSRRINW------------------  212 (260)
T ss_pred             cCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCC------HHHHHHHHHhcccCC------------------
Confidence            89999999988888999999999999999999999996542      111111111000000                  


Q ss_pred             chhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCCh---HHHhcCcccccc
Q 013220          357 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA---QQCLQHPWLSLR  418 (447)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta---~elL~hp~f~~~  418 (447)
                                          ........+..+.++|.+||+.||++|||+   +|+|+||||+..
T Consensus       213 --------------------~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~l~~~~~~~~  257 (260)
T cd05611         213 --------------------PEEVKEFCSPEAVDLINRLLCMDPAKRLGANGYQEIKSHPFFKSI  257 (260)
T ss_pred             --------------------CCcccccCCHHHHHHHHHHccCCHHHccCCCcHHHHHcChHhhcC
Confidence                                000112346788999999999999999955   799999999753

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=100.00  E-value=1.6e-35  Score=281.17  Aligned_cols=251  Identities=33%  Similarity=0.485  Sum_probs=205.1

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      +|++.+.||+|++|.||+|.+..++..|++|++....   ...+.+.+|+++++.+      +|++|+++++.+...  .
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~~--~   72 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSL------QHPNIVRYYGSERDE--E   72 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHc------CCCCEeeEEEEEecC--C
Confidence            4889999999999999999999899999999877654   3467888999999999      789999999988753  1


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      ....+++|||+ +++|.+.+....  .+++..+..++.|++.||+|||+. |++|+|++|+||++               
T Consensus        73 ~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lh~~-~~~h~dl~p~ni~i---------------  134 (260)
T cd06606          73 KNTLNIFLEYVSGGSLSSLLKKFG--KLPEPVIRKYTRQILEGLAYLHSN-GIVHRDIKGANILV---------------  134 (260)
T ss_pred             CCeEEEEEEecCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC-CccccCCCHHHEEE---------------
Confidence            36899999999 888988876543  689999999999999999999996 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---  269 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---  269 (447)
                                                                               .....++|+|||.+......   
T Consensus       135 ---------------------------------------------------------~~~~~~~l~d~~~~~~~~~~~~~  157 (260)
T cd06606         135 ---------------------------------------------------------DSDGVVKLADFGCAKRLGDIETG  157 (260)
T ss_pred             ---------------------------------------------------------cCCCCEEEcccccEEeccccccc
Confidence                                                                     33567999999998765433   


Q ss_pred             --cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          270 --FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       270 --~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                        .....++..|+|||.+.+..++.++|+||||+++|+|++|..||...+        .....+..+..           
T Consensus       158 ~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~--------~~~~~~~~~~~-----------  218 (260)
T cd06606         158 EGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELG--------NPMAALYKIGS-----------  218 (260)
T ss_pred             ccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--------chHHHHHhccc-----------
Confidence              234567899999999988889999999999999999999999997542        11111111110           


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                                                ......++...+..+.+||.+||+.||++||++.|++.||||
T Consensus       219 --------------------------~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~ll~~~~~  260 (260)
T cd06606         219 --------------------------SGEPPEIPEHLSEEAKDFLRKCLRRDPKKRPTADELLQHPFL  260 (260)
T ss_pred             --------------------------cCCCcCCCcccCHHHHHHHHHhCcCChhhCCCHHHHhhCCCC
Confidence                                      001112334446789999999999999999999999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=4.1e-36  Score=304.34  Aligned_cols=248  Identities=23%  Similarity=0.337  Sum_probs=190.4

Q ss_pred             CceEEEEeecccCceEEEEEEeCC-----CCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTR-----TSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~-----~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      ++|++.+.||+|+||.||+|++..     ++..||+|+++...  .....+.+|+++++.+.     .|+||+++++++.
T Consensus        38 ~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~-----~h~nIv~~~~~~~  112 (374)
T cd05106          38 DNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLG-----QHKNIVNLLGACT  112 (374)
T ss_pred             HHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhc-----cCCceeeEeeEec
Confidence            579999999999999999998643     34579999886532  33456888999999885     6899999999887


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhc---------------------------------------------------
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSR---------------------------------------------------  136 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~---------------------------------------------------  136 (447)
                      ..    ...++||||| +++|.+++....                                                   
T Consensus       113 ~~----~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (374)
T cd05106         113 HG----GPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVS  188 (374)
T ss_pred             CC----CCeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCcc
Confidence            53    6899999999 889988875321                                                   


Q ss_pred             -----------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCCC
Q 013220          137 -----------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERP  199 (447)
Q Consensus       137 -----------------~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~  199 (447)
                                       ...+++..+..++.||+.||+|||++ ||+||||||+||+++                     
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~-giiHrDLkp~Nil~~---------------------  246 (374)
T cd05106         189 SSSSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASK-NCIHRDVAARNVLLT---------------------  246 (374)
T ss_pred             ccccccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHC-CEEeccCchheEEEe---------------------
Confidence                             11367788899999999999999996 999999999999993                     


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccc-----cCC
Q 013220          200 EGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA-----EEI  274 (447)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~-----~~~  274 (447)
                                                                         ....++|+|||++........     ...
T Consensus       247 ---------------------------------------------------~~~~~kL~DfGla~~~~~~~~~~~~~~~~  275 (374)
T cd05106         247 ---------------------------------------------------DGRVAKICDFGLARDIMNDSNYVVKGNAR  275 (374)
T ss_pred             ---------------------------------------------------CCCeEEEeeceeeeeccCCcceeeccCCC
Confidence                                                               345799999999865432211     122


Q ss_pred             CCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchh
Q 013220          275 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  353 (447)
Q Consensus       275 gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  353 (447)
                      ++..|+|||++.+..++.++|||||||++|+|++ |..||.....      ......+... +                 
T Consensus       276 ~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~------~~~~~~~~~~-~-----------------  331 (374)
T cd05106         276 LPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILV------NSKFYKMVKR-G-----------------  331 (374)
T ss_pred             CccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccc------cHHHHHHHHc-c-----------------
Confidence            4567999999988889999999999999999997 9999975421      1111111100 0                 


Q ss_pred             cccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          354 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                            .....+...+.++.++|.+||+.||++|||+.++++
T Consensus       332 ----------------------~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~l~~  367 (374)
T cd05106         332 ----------------------YQMSRPDFAPPEIYSIMKMCWNLEPTERPTFSQISQ  367 (374)
T ss_pred             ----------------------cCccCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                                  000112233568999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=100.00  E-value=1.2e-36  Score=294.61  Aligned_cols=254  Identities=31%  Similarity=0.457  Sum_probs=201.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      ..|+..+.||+|+||.||+|.+..++..||+|.+...  ....+.+.+|+++++.+      +|+||+++++.+..    
T Consensus         4 ~~y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~----   73 (277)
T cd06642           4 ELFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQC------DSPYITRYYGSYLK----   73 (277)
T ss_pred             HHHHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcC------CCCccHhhhccccc----
Confidence            3577788899999999999999889999999987643  23345788999999998      88999999998874    


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      +...++||||+ +++|.+.+..   ..+++..+..++.|++.||.|||++ |++|+||+|+||++.              
T Consensus        74 ~~~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~-~ivH~dl~p~ni~i~--------------  135 (277)
T cd06642          74 GTKLWIIMEYLGGGSALDLLKP---GPLEETYIATILREILKGLDYLHSE-RKIHRDIKAANVLLS--------------  135 (277)
T ss_pred             CCceEEEEEccCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHhcC-CeeccCCChheEEEe--------------
Confidence            46899999999 7788877743   3478899999999999999999997 999999999999993              


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc--
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF--  270 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~--  270 (447)
                                                                                ....++|+|||++.......  
T Consensus       136 ----------------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~  157 (277)
T cd06642         136 ----------------------------------------------------------EQGDVKLADFGVAGQLTDTQIK  157 (277)
T ss_pred             ----------------------------------------------------------CCCCEEEccccccccccCcchh
Confidence                                                                      34569999999986544321  


Q ss_pred             -ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 -AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 -~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                       ....++..|+|||.+.+..++.++|+|||||++|+|++|..||......      ..   ...+....           
T Consensus       158 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~------~~---~~~~~~~~-----------  217 (277)
T cd06642         158 RNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPM------RV---LFLIPKNS-----------  217 (277)
T ss_pred             hhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchh------hH---HhhhhcCC-----------
Confidence             2235788999999998888999999999999999999999998643210      00   00000000           


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCCc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR  422 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~~  422 (447)
                                                 .+..+...+..+.++|.+||+.+|++|||+.++++||||......+
T Consensus       218 ---------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~~~~  263 (277)
T cd06642         218 ---------------------------PPTLEGQYSKPFKEFVEACLNKDPRFRPTAKELLKHKFITRYTKKT  263 (277)
T ss_pred             ---------------------------CCCCCcccCHHHHHHHHHHccCCcccCcCHHHHHHhHHHHHHhhhH
Confidence                                       0012223456788999999999999999999999999998655433

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=1.5e-35  Score=284.77  Aligned_cols=250  Identities=26%  Similarity=0.371  Sum_probs=195.8

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEech----hHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKS----AAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~----~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|++.+.||+|+||.||+|++..++..||+|.++.    +......+.+|+++++.+      +|+||+++++.+... 
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~~-   74 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQL------NHPNVIKYLDSFIED-   74 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhC------CCcceeeeeeeEEEC-
Confidence            579999999999999999999999999999997643    233345678899999999      789999999988753 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSR--YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~--~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                         ...+++|||+ +++|.+++....  ...+++..+..++.|++.||+|||++ ||+|+||||+||+++          
T Consensus        75 ---~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~-~i~H~dl~~~nil~~----------  140 (267)
T cd08228          75 ---NELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSR-RVMHRDIKPANVFIT----------  140 (267)
T ss_pred             ---CeEEEEEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhC-CeeCCCCCHHHEEEc----------
Confidence               6899999999 778888775422  23478889999999999999999997 999999999999993          


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                    ....++|+|||.+.....
T Consensus       141 --------------------------------------------------------------~~~~~~l~d~g~~~~~~~  158 (267)
T cd08228         141 --------------------------------------------------------------ATGVVKLGDLGLGRFFSS  158 (267)
T ss_pred             --------------------------------------------------------------CCCCEEECccccceeccc
Confidence                                                                          345699999998865442


Q ss_pred             c---cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          269 Q---FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       269 ~---~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                      .   .....++..|+|||.+.+..++.++|+|||||++|+|++|..||.....     +...........+..+      
T Consensus       159 ~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~------  227 (267)
T cd08228         159 KTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKM-----NLFSLCQKIEQCDYPP------  227 (267)
T ss_pred             hhHHHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCccccc-----cHHHHHHHHhcCCCCC------
Confidence            2   1234678899999999888889999999999999999999999965421     1111111111000000      


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                       ......+..+.+++.+||+.+|++||++.++++.
T Consensus       228 ---------------------------------~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~  261 (267)
T cd08228         228 ---------------------------------LPTEHYSEKLRELVSMCIYPDPDQRPDIGYVHQI  261 (267)
T ss_pred             ---------------------------------CChhhcCHHHHHHHHHHCCCCcccCcCHHHHHHH
Confidence                                             0112345678999999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=100.00  E-value=4e-36  Score=299.70  Aligned_cols=288  Identities=33%  Similarity=0.510  Sum_probs=214.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.+.||+|+||.||+|.+..++..||+|.+...   ......+.+|+.+++.+.     +|+||+++++++...  
T Consensus         7 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~ni~~~~~~~~~~--   79 (337)
T cd07852           7 RKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELG-----DHPNIVKLLNVIKAE--   79 (337)
T ss_pred             hHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhc-----CCCCccceeeeeccC--
Confidence            7899999999999999999999889999999976432   233445778999999884     688999999987653  


Q ss_pred             CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          113 NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       113 ~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      ++...++||||++++|...+...   .+++..+..++.||+.||+|||++ ||+|+||||+||++               
T Consensus        80 ~~~~~~lv~e~~~~~L~~~~~~~---~~~~~~~~~i~~qi~~~L~~LH~~-~i~H~dl~p~nill---------------  140 (337)
T cd07852          80 NDKDIYLVFEYMETDLHAVIRAN---ILEDVHKRYIMYQLLKALKYIHSG-NVIHRDLKPSNILL---------------  140 (337)
T ss_pred             CCceEEEEecccccCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEE---------------
Confidence            34578999999987888877543   478888899999999999999996 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc----
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----  268 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~----  268 (447)
                                                                               +..+.++|+|||.+.....    
T Consensus       141 ---------------------------------------------------------~~~~~~kl~d~g~~~~~~~~~~~  163 (337)
T cd07852         141 ---------------------------------------------------------NSDCRVKLADFGLARSLSELEEN  163 (337)
T ss_pred             ---------------------------------------------------------cCCCcEEEeeccchhcccccccc
Confidence                                                                     4467899999998864422    


Q ss_pred             ----ccccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhh
Q 013220          269 ----QFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  343 (447)
Q Consensus       269 ----~~~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  343 (447)
                          ......++..|+|||.+.+ ..++.++|+|||||++|+|++|+.||...+      .......+....+..+....
T Consensus       164 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~------~~~~~~~~~~~~~~~~~~~~  237 (337)
T cd07852         164 PENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTS------TLNQLEKIIEVIGPPSAEDI  237 (337)
T ss_pred             ccCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHHHhCCCCHHHH
Confidence                1223468889999998865 457889999999999999999999997653      44455556665555543321


Q ss_pred             hCCCC--ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          344 IGGAQ--SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       344 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                      .....  ....+.      .+.........       ......+.++.+||.+||+.||++|||+.++++||||+.....
T Consensus       238 ~~~~~~~~~~~~~------~~~~~~~~~~~-------~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~~~~~~~~~~  304 (337)
T cd07852         238 ESIKSPFAATMLD------SLPSRPRKPLD-------ELLPKASDDALDLLKKLLVFNPNKRLTAEEALEHPYVAQFHNP  304 (337)
T ss_pred             HHHHhhhHHHhhh------hcccccccchh-------hhccCCCHHHHHHHHHhccCCcccccCHHHHhhChhhhhhccC
Confidence            11000  000000      00000000000       0112256789999999999999999999999999999987655


Q ss_pred             cccc
Q 013220          422 RDET  425 (447)
Q Consensus       422 ~~~~  425 (447)
                      ..+.
T Consensus       305 ~~~~  308 (337)
T cd07852         305 SDEP  308 (337)
T ss_pred             CCCC
Confidence            4443

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.5e-35  Score=284.83  Aligned_cols=250  Identities=27%  Similarity=0.434  Sum_probs=199.9

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh------HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA------AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~------~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      .+|.+.+.||+|+||.||+|++..++..||+|.+...      ......+.+|+++++.+      .|++|+++++.+..
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l------~h~~i~~~~~~~~~   75 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNL------RHDRIVQYYGCLRD   75 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHc------CCCCcceEEEEEEc
Confidence            3699999999999999999999999999999976422      23345788899999999      78899999998765


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                      .  .+..++++|||+ +++|.+.+...  ..+++..+..++.|++.||.|||+. |++|+||||+||++           
T Consensus        76 ~--~~~~~~~v~e~~~~~~L~~~~~~~--~~l~~~~~~~~~~~i~~al~~LH~~-~i~H~dl~p~ni~i-----------  139 (264)
T cd06653          76 P--EEKKLSIFVEYMPGGSIKDQLKAY--GALTENVTRRYTRQILQGVSYLHSN-MIVHRDIKGANILR-----------  139 (264)
T ss_pred             C--CCCEEEEEEEeCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhC-CEecCCCCHHHEEE-----------
Confidence            3  345789999999 78898887643  3478899999999999999999996 99999999999999           


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                   +....++|+|||++.....
T Consensus       140 -------------------------------------------------------------~~~~~~~l~dfg~~~~~~~  158 (264)
T cd06653         140 -------------------------------------------------------------DSAGNVKLGDFGASKRIQT  158 (264)
T ss_pred             -------------------------------------------------------------cCCCCEEECcccccccccc
Confidence                                                                         3345689999999865432


Q ss_pred             ------ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh
Q 013220          269 ------QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  342 (447)
Q Consensus       269 ------~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (447)
                            ......++..|+|||.+.+..++.++|+|||||++|+|++|+.||....         ....+.+......   
T Consensus       159 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~---------~~~~~~~~~~~~~---  226 (264)
T cd06653         159 ICMSGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEYE---------AMAAIFKIATQPT---  226 (264)
T ss_pred             ccccCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCccC---------HHHHHHHHHcCCC---
Confidence                  1123467889999999988888999999999999999999999996431         1222222221111   


Q ss_pred             hhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                                                        ...++...++.+.++|.+||+ +|.+|||+.++++|||+
T Consensus       227 ----------------------------------~~~~p~~~~~~~~~~i~~~l~-~~~~r~~~~~~~~~~~~  264 (264)
T cd06653         227 ----------------------------------KPMLPDGVSDACRDFLKQIFV-EEKRRPTAEFLLRHPFV  264 (264)
T ss_pred             ----------------------------------CCCCCcccCHHHHHHHHHHhc-CcccCccHHHHhcCCCC
Confidence                                              112455667889999999999 57999999999999995

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.4e-37  Score=310.96  Aligned_cols=247  Identities=30%  Similarity=0.438  Sum_probs=204.9

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      .+.|.+...+|.|+|+.|-.|.+..+++.+++|++...   .....+|+.++....     +|+||+++.+.+.+    +
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~---~~~~~~e~~~~~~~~-----~h~niv~~~~v~~~----~  388 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKR---ADDNQDEIPISLLVR-----DHPNIVKSHDVYED----G  388 (612)
T ss_pred             chhhccccccCCCCccceeeeeccccccchhheecccc---ccccccccchhhhhc-----CCCcceeecceecC----C
Confidence            36799999999999999999999999999999998876   335667888888876     89999999999985    4


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      .+.|+|||.+ |+.+.+-+....   ....++..|+++|+.|+.|||++ |+||||+||+|||+.               
T Consensus       389 ~~~~~v~e~l~g~ell~ri~~~~---~~~~e~~~w~~~lv~Av~~LH~~-gvvhRDLkp~NIL~~---------------  449 (612)
T KOG0603|consen  389 KEIYLVMELLDGGELLRRIRSKP---EFCSEASQWAAELVSAVDYLHEQ-GVVHRDLKPGNILLD---------------  449 (612)
T ss_pred             ceeeeeehhccccHHHHHHHhcc---hhHHHHHHHHHHHHHHHHHHHhc-CeeecCCChhheeec---------------
Confidence            7999999999 776666654332   23377888999999999999997 999999999999992               


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccccC
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEE  273 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~~~  273 (447)
                                                                              ....+++|+|||+++.........
T Consensus       450 --------------------------------------------------------~~~g~lrltyFG~a~~~~~~~~tp  473 (612)
T KOG0603|consen  450 --------------------------------------------------------GSAGHLRLTYFGFWSELERSCDTP  473 (612)
T ss_pred             --------------------------------------------------------CCCCcEEEEEechhhhCchhhccc
Confidence                                                                    125679999999998766554455


Q ss_pred             CCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchh
Q 013220          274 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  353 (447)
Q Consensus       274 ~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  353 (447)
                      +-|..|.|||++....|+.++|+||||++||+|++|+.||...+..         ..++..++..+              
T Consensus       474 ~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~---------~ei~~~i~~~~--------------  530 (612)
T KOG0603|consen  474 ALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAG---------IEIHTRIQMPK--------------  530 (612)
T ss_pred             chhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCch---------HHHHHhhcCCc--------------
Confidence            6789999999999999999999999999999999999999866421         22222222221              


Q ss_pred             cccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccc
Q 013220          354 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~  417 (447)
                                                +...+++++++||.+||+.||.+|+++++++.||||.+
T Consensus       531 --------------------------~s~~vS~~AKdLl~~LL~~dP~~Rl~~~~i~~h~w~~~  568 (612)
T KOG0603|consen  531 --------------------------FSECVSDEAKDLLQQLLQVDPALRLGADEIGAHPWFLS  568 (612)
T ss_pred             --------------------------cccccCHHHHHHHHHhccCChhhCcChhhhccCcchhc
Confidence                                      23567889999999999999999999999999999943

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=100.00  E-value=1.1e-35  Score=288.66  Aligned_cols=250  Identities=25%  Similarity=0.382  Sum_probs=193.2

Q ss_pred             eecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEE
Q 013220           43 KLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLC  118 (447)
Q Consensus        43 ~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~  118 (447)
                      .||+|+||.||+|++..+++.||+|.+....    ........|..+++.+...   +|++|+++++.+...    +..+
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~----~~~~   73 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG---DCPFIVCMSYAFHTP----DKLS   73 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhC---CCCcEeeeeeeeecC----CEEE
Confidence            3799999999999999999999999875432    1122345565555555432   789999999988853    6899


Q ss_pred             EEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcC
Q 013220          119 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE  197 (447)
Q Consensus       119 lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~  197 (447)
                      +||||+ |++|...+...  ..+++..++.++.|++.||+|||+. +|+||||||+||++                    
T Consensus        74 ~v~e~~~g~~L~~~l~~~--~~l~~~~~~~~~~ql~~~l~~lH~~-~i~H~di~p~nili--------------------  130 (278)
T cd05606          74 FILDLMNGGDLHYHLSQH--GVFSEAEMRFYAAEIILGLEHMHNR-FVVYRDLKPANILL--------------------  130 (278)
T ss_pred             EEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CEEcCCCCHHHEEE--------------------
Confidence            999999 88888777543  4589999999999999999999996 99999999999999                    


Q ss_pred             CCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-cccCCCC
Q 013220          198 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-FAEEIQT  276 (447)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-~~~~~gt  276 (447)
                                                                          +.+..++|+|||.+...... .....|+
T Consensus       131 ----------------------------------------------------~~~~~~kl~dfg~~~~~~~~~~~~~~~~  158 (278)
T cd05606         131 ----------------------------------------------------DEHGHVRISDLGLACDFSKKKPHASVGT  158 (278)
T ss_pred             ----------------------------------------------------CCCCCEEEccCcCccccCccCCcCcCCC
Confidence                                                                33567999999998654322 2335789


Q ss_pred             CCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcc
Q 013220          277 RQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  355 (447)
Q Consensus       277 ~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  355 (447)
                      ..|+|||.+.+. .++.++||||+||++|+|++|..||.......    .....   .                      
T Consensus       159 ~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~----~~~~~---~----------------------  209 (278)
T cd05606         159 HGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKD----KHEID---R----------------------  209 (278)
T ss_pred             cCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCccc----hHHHH---H----------------------
Confidence            999999999754 68899999999999999999999997652110    00000   0                      


Q ss_pred             cchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC-----ChHHHhcCccccccc
Q 013220          356 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRN  419 (447)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp-----ta~elL~hp~f~~~~  419 (447)
                                      ........++...+..+.++|.+||..+|.+||     ++.++++||||+...
T Consensus       210 ----------------~~~~~~~~~~~~~s~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~~~~~~~~~  262 (278)
T cd05606         210 ----------------MTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKEHPFFRSLD  262 (278)
T ss_pred             ----------------HhhccCCCCCCcCCHHHHHHHHHHhhcCHHhccCCCCCCHHHHHhCccccCCC
Confidence                            000111223444567899999999999999999     999999999998765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=1.5e-35  Score=287.06  Aligned_cols=251  Identities=22%  Similarity=0.341  Sum_probs=195.2

Q ss_pred             CCceEEEEeecccCceEEEEEEeCC-----CCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTR-----TSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~-----~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      .++|++.+.||+|+||.||+|.+..     ++..|++|.....  ......+.+|+.+++.+      +|+||+++++++
T Consensus         5 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~   78 (277)
T cd05036           5 RDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKF------NHQNIVRLIGVS   78 (277)
T ss_pred             HHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhC------CCCCEeeEEEEE
Confidence            4689999999999999999998876     7789999977643  23345688899999999      789999999987


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhcc-----CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecC
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSRY-----KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTI  181 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~-----~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~  181 (447)
                      ...    ...++||||+ +++|.+++.....     ..+++..+..++.||+.||+|||++ +++|+||||+||++... 
T Consensus        79 ~~~----~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~-~ivH~dlkp~nil~~~~-  152 (277)
T cd05036          79 FER----LPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEEN-HFIHRDIAARNCLLTCK-  152 (277)
T ss_pred             ccC----CCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CEeecccchheEEEecc-
Confidence            754    5689999999 8899998865431     2478889999999999999999996 99999999999999531 


Q ss_pred             CCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecC
Q 013220          182 DPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFG  261 (447)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg  261 (447)
                                                                                          .....++|+|||
T Consensus       153 --------------------------------------------------------------------~~~~~~kl~dfg  164 (277)
T cd05036         153 --------------------------------------------------------------------GPGRVAKIADFG  164 (277)
T ss_pred             --------------------------------------------------------------------CCCcceEeccCc
Confidence                                                                                113458999999


Q ss_pred             ccccccccc-----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHh
Q 013220          262 NACRANKQF-----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELI  335 (447)
Q Consensus       262 ~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~  335 (447)
                      .+.......     .....+..|+|||.+.+..++.++|||||||++|+|++ |..||...+      ....+..+.   
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~------~~~~~~~~~---  235 (277)
T cd05036         165 MARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRT------NQEVMEFVT---  235 (277)
T ss_pred             cccccCCccceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCC------HHHHHHHHH---
Confidence            987543221     11223567999999998889999999999999999996 999997543      111111110   


Q ss_pred             CCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          336 GKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       336 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                      +..                                      ....+...+..+.+|+.+||+.+|++|||+.++|+|
T Consensus       236 ~~~--------------------------------------~~~~~~~~~~~~~~~i~~cl~~~p~~Rps~~~vl~~  274 (277)
T cd05036         236 GGG--------------------------------------RLDPPKGCPGPVYRIMTDCWQHTPEDRPNFATILER  274 (277)
T ss_pred             cCC--------------------------------------cCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence            000                                      011233446688899999999999999999999986

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=100.00  E-value=5.8e-36  Score=286.00  Aligned_cols=242  Identities=31%  Similarity=0.481  Sum_probs=194.3

Q ss_pred             ecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEE
Q 013220           44 LGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCM  119 (447)
Q Consensus        44 lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~l  119 (447)
                      ||.|+||.||+|.+..+++.+++|++....    .....+.+|+++++.+      .|+||+++++.+..    +...|+
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~------~h~~i~~~~~~~~~----~~~~~l   70 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQA------QSPYVVKLYYSFQG----KKNLYL   70 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhC------CCcchhHHHHheec----CcEEEE
Confidence            689999999999999889999999886543    2455788899999998      78999999988764    478999


Q ss_pred             EEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCC
Q 013220          120 VLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER  198 (447)
Q Consensus       120 vmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~  198 (447)
                      +|||+ +++|.+++....  .+++..+..++.||+.||+|||+. |++|+||+|+||++                     
T Consensus        71 v~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~L~~lH~~-~i~H~di~~~nil~---------------------  126 (265)
T cd05579          71 VMEYLPGGDLASLLENVG--SLDEDVARIYIAEIVLALEYLHSN-GIIHRDLKPDNILI---------------------  126 (265)
T ss_pred             EEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHc-CeecCCCCHHHeEE---------------------
Confidence            99999 789988886533  589999999999999999999996 99999999999999                     


Q ss_pred             CCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---------
Q 013220          199 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---------  269 (447)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---------  269 (447)
                                                                         +....++|+|||++......         
T Consensus       127 ---------------------------------------------------~~~~~~~l~dfg~~~~~~~~~~~~~~~~~  155 (265)
T cd05579         127 ---------------------------------------------------DSNGHLKLTDFGLSKVGLVRRQINLNDDE  155 (265)
T ss_pred             ---------------------------------------------------cCCCCEEEEecccchhcccCccccccccc
Confidence                                                               34567999999988643322         


Q ss_pred             --cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          270 --FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       270 --~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                        .....++..|+|||.+.+..++.++|+||||+++|++++|..||....      .......+..              
T Consensus       156 ~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~------~~~~~~~~~~--------------  215 (265)
T cd05579         156 KEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGET------PEEIFQNILN--------------  215 (265)
T ss_pred             ccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHhc--------------
Confidence              123357889999999988888999999999999999999999996542      1111111100              


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChh--hHHHHHHHHhhccccCCCCCCCh---HHHhcCcccccc
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSET--DAREFAEFLVPLLDFTPEKRPTA---QQCLQHPWLSLR  418 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~ll~~~L~~dP~kRpta---~elL~hp~f~~~  418 (447)
                                                  .....+..  .+..+.+|+.+||+.+|++|||+   .++|+||||+..
T Consensus       216 ----------------------------~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l~~~~~~~~  263 (265)
T cd05579         216 ----------------------------GKIEWPEDVEVSDEAIDLISKLLVPDPEKRLGAKSIEEIKNHPFFKGI  263 (265)
T ss_pred             ----------------------------CCcCCCccccCCHHHHHHHHHHhcCCHhhcCCCccHHHHhcCccccCC
Confidence                                        00011111  26688999999999999999999   999999999864

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=1.2e-35  Score=284.63  Aligned_cols=246  Identities=25%  Similarity=0.404  Sum_probs=194.6

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      .++|++.++||+|+||.||+|.+. ++..||+|.+.......+.+.+|+.+++.+      +|+||+++++.+..    .
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~----~   73 (261)
T cd05072           5 RESIKLVKKLGAGQFGEVWMGYYN-NSTKVAVKTLKPGTMSVQAFLEEANLMKTL------QHDKLVRLYAVVTK----E   73 (261)
T ss_pred             hHHeEEeeecCCcCCceEEEEEec-CCceEEEEEccCCchhHHHHHHHHHHHHhC------CCCCeeeEEEEEcC----C
Confidence            468999999999999999999864 556799998776555567889999999999      78999999988764    3


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ...+++|||+ +++|.+++.......+++..+..++.|++.||+|||+. +++|+||||+||++                
T Consensus        74 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~-~i~H~dl~p~nili----------------  136 (261)
T cd05072          74 EPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERK-NYIHRDLRAANVLV----------------  136 (261)
T ss_pred             CCcEEEEecCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeccccchhhEEe----------------
Confidence            6789999999 88999988655445588889999999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc---
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF---  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~---  270 (447)
                                                                              +....++|+|||.+.......   
T Consensus       137 --------------------------------------------------------~~~~~~~l~dfg~~~~~~~~~~~~  160 (261)
T cd05072         137 --------------------------------------------------------SESLMCKIADFGLARVIEDNEYTA  160 (261)
T ss_pred             --------------------------------------------------------cCCCcEEECCCccceecCCCceec
Confidence                                                                    335679999999997544221   


Q ss_pred             -ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          271 -AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       271 -~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                       ....++..|+|||.+.+..++.++|+|||||++|+|++ |..||....      .......+   ....+         
T Consensus       161 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~------~~~~~~~~---~~~~~---------  222 (261)
T cd05072         161 REGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMS------NSDVMSAL---QRGYR---------  222 (261)
T ss_pred             cCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCC------HHHHHHHH---HcCCC---------
Confidence             12234678999999988888999999999999999998 999996542      11111111   10000         


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                   .......+.++.+++.+||+.+|++|||++++++
T Consensus       223 -----------------------------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  256 (261)
T cd05072         223 -----------------------------MPRMENCPDELYDIMKTCWKEKAEERPTFDYLQS  256 (261)
T ss_pred             -----------------------------CCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence                                         0111234568899999999999999999999864

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=100.00  E-value=1.5e-35  Score=290.02  Aligned_cols=261  Identities=22%  Similarity=0.359  Sum_probs=199.9

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      .+.|++.+.||+|+||.||+|.+..++..||+|.++...  .....+..|++++....     +|+||+++++++..   
T Consensus        14 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~-----~~~~i~~~~~~~~~---   85 (296)
T cd06618          14 LNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSH-----DCPYIVKCYGYFIT---   85 (296)
T ss_pred             cchheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhcc-----CCCchHhhheeeec---
Confidence            478999999999999999999999889999999886432  23345666777666653     69999999999875   


Q ss_pred             CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          113 NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       113 ~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                       +...+++|||+++.+.+++.... ..+++..+..++.|++.||+|||+..||+||||+|+||++               
T Consensus        86 -~~~~~~v~e~~~~~l~~l~~~~~-~~l~~~~~~~i~~~i~~~l~~lH~~~~i~H~dl~p~nill---------------  148 (296)
T cd06618          86 -DSDVFICMELMSTCLDKLLKRIQ-GPIPEDILGKMTVAIVKALHYLKEKHGVIHRDVKPSNILL---------------  148 (296)
T ss_pred             -CCeEEEEeeccCcCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhhCCEecCCCcHHHEEE---------------
Confidence             36899999999878887775533 3688899999999999999999973499999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--c
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--F  270 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--~  270 (447)
                                                                               +....++|+|||.+......  .
T Consensus       149 ---------------------------------------------------------~~~~~~kL~dfg~~~~~~~~~~~  171 (296)
T cd06618         149 ---------------------------------------------------------DASGNVKLCDFGISGRLVDSKAK  171 (296)
T ss_pred             ---------------------------------------------------------cCCCCEEECccccchhccCCCcc
Confidence                                                                     33567999999998654322  2


Q ss_pred             ccCCCCCCccChHHhhcCC----CCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCC
Q 013220          271 AEEIQTRQYRAPEVILRAG----YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  346 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~----~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  346 (447)
                      ....++..|+|||.+.+..    ++.++|+|||||++|+|++|..||....      .  ..+.+..........     
T Consensus       172 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~------~--~~~~~~~~~~~~~~~-----  238 (296)
T cd06618         172 TRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCK------T--EFEVLTKILQEEPPS-----  238 (296)
T ss_pred             cCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcch------h--HHHHHHHHhcCCCCC-----
Confidence            2335778999999997553    7889999999999999999999996431      0  111111111110000     


Q ss_pred             CCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          347 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                                                     .......+.++.+||.+||+.||.+|||++++++||||+.....
T Consensus       239 -------------------------------~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~~~  282 (296)
T cd06618         239 -------------------------------LPPNEGFSPDFCSFVDLCLTKDHRKRPKYRELLQHPFIRRYETA  282 (296)
T ss_pred             -------------------------------CCCCCCCCHHHHHHHHHHccCChhhCCCHHHHhcChhhhccchh
Confidence                                           00011235688999999999999999999999999999975543

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=9e-36  Score=294.48  Aligned_cols=249  Identities=20%  Similarity=0.314  Sum_probs=193.3

Q ss_pred             cccCCceEEEEeecccCceEEEEEEeCCCCe----EEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecc
Q 013220           32 LFNGGRYIAQRKLGWGQFSIVWLAYDTRTSS----YVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLID  105 (447)
Q Consensus        32 ~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~----~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~  105 (447)
                      ++...+|++.+.||+|+||+||+|++..++.    .||+|+++..  ....+.+.+|+.+++.+      .|+||+++++
T Consensus         3 ~~~~~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l------~h~niv~~~g   76 (316)
T cd05108           3 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV------DNPHVCRLLG   76 (316)
T ss_pred             ccchhhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhC------CCCCCCeEEE
Confidence            3456789999999999999999998765554    4899987633  34456788899999999      8899999999


Q ss_pred             cccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCC
Q 013220          106 HFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       106 ~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~  184 (447)
                      ++...     ..++++||+ +++|.+.+.... ..++...+..++.||+.||+|||++ ||+||||||+||++       
T Consensus        77 ~~~~~-----~~~~v~e~~~~g~l~~~l~~~~-~~~~~~~~~~~~~qi~~~L~~LH~~-~iiH~dlkp~Nill-------  142 (316)
T cd05108          77 ICLTS-----TVQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEER-RLVHRDLAARNVLV-------  142 (316)
T ss_pred             EEcCC-----CceeeeecCCCCCHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHHHhc-CeeccccchhheEe-------
Confidence            88642     467999999 889998886533 3478888999999999999999996 99999999999999       


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                       .....++|+|||++.
T Consensus       143 -----------------------------------------------------------------~~~~~~kl~DfG~a~  157 (316)
T cd05108         143 -----------------------------------------------------------------KTPQHVKITDFGLAK  157 (316)
T ss_pred             -----------------------------------------------------------------cCCCcEEEccccccc
Confidence                                                                             335679999999997


Q ss_pred             ccccccc-----cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCC
Q 013220          265 RANKQFA-----EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKM  338 (447)
Q Consensus       265 ~~~~~~~-----~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~  338 (447)
                      .......     ...++..|+|||.+.+..++.++|||||||++|+|++ |..||.+.+       ...+..+.....  
T Consensus       158 ~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~-------~~~~~~~~~~~~--  228 (316)
T cd05108         158 LLGADEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP-------ASEISSILEKGE--  228 (316)
T ss_pred             cccCCCcceeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCC-------HHHHHHHHhCCC--
Confidence            5542211     1123567999999998889999999999999999997 999986542       111111111000  


Q ss_pred             CHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          339 PRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                            ....+...+..+.+++.+||..||++|||+.+++.+
T Consensus       229 --------------------------------------~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~l~~~  264 (316)
T cd05108         229 --------------------------------------RLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE  264 (316)
T ss_pred             --------------------------------------CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                                                  001122334578899999999999999999999976

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=8.5e-36  Score=302.13  Aligned_cols=250  Identities=26%  Similarity=0.375  Sum_probs=191.3

Q ss_pred             CCceEEEEeecccCceEEEEEEe-----CCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYD-----TRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~-----~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      .++|++.++||+|+||+||+|++     ..++..||+|+++...  ...+.+.+|+++++.+.     .|+||+++++++
T Consensus        34 ~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~-----~HpnIv~l~~~~  108 (375)
T cd05104          34 RNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLG-----NHINIVNLLGAC  108 (375)
T ss_pred             hHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhc-----CCcceeeeeeee
Confidence            35899999999999999999964     3457789999886432  33457888999999985     689999999988


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhcc-------------------------------------------------
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSRY-------------------------------------------------  137 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~-------------------------------------------------  137 (447)
                      ..    +...++||||| +++|.+++.....                                                 
T Consensus       109 ~~----~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  184 (375)
T cd05104         109 TV----GGPTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKAD  184 (375)
T ss_pred             cc----CCcceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccc
Confidence            75    36799999999 8899888754210                                                 


Q ss_pred             ------------------------CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          138 ------------------------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       138 ------------------------~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                                              ..+++..+..++.||+.||+|||++ ||+||||||+||++.               
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~-~ivH~Dlkp~Nill~---------------  248 (375)
T cd05104         185 KRRSVRSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASK-NCIHRDLAARNILLT---------------  248 (375)
T ss_pred             cccccccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCchhhEEEE---------------
Confidence                                    1367778899999999999999996 999999999999993               


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccc--
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA--  271 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~--  271 (447)
                                                                               ....++|+|||++........  
T Consensus       249 ---------------------------------------------------------~~~~~kl~DfG~a~~~~~~~~~~  271 (375)
T cd05104         249 ---------------------------------------------------------HGRITKICDFGLARDIRNDSNYV  271 (375)
T ss_pred             ---------------------------------------------------------CCCcEEEecCccceeccCccccc
Confidence                                                                     345699999999865432211  


Q ss_pred             ---cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          272 ---EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       272 ---~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                         ...++..|+|||.+.+..++.++|||||||++|+|++ |..||.....     +......+..  +.          
T Consensus       272 ~~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~-----~~~~~~~~~~--~~----------  334 (375)
T cd05104         272 VKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPV-----DSKFYKMIKE--GY----------  334 (375)
T ss_pred             ccCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCc-----hHHHHHHHHh--Cc----------
Confidence               1234567999999999899999999999999999997 8889865421     1111110000  00          


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                   ....+...+.++.+||.+||+.||++|||++|+++.
T Consensus       335 -----------------------------~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~  370 (375)
T cd05104         335 -----------------------------RMLSPECAPSEMYDIMKSCWDADPLKRPTFKQIVQL  370 (375)
T ss_pred             -----------------------------cCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHH
Confidence                                         000122235688999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=100.00  E-value=1.3e-35  Score=287.54  Aligned_cols=250  Identities=30%  Similarity=0.440  Sum_probs=199.4

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      =|++.++||.|+||.||+|.+..++..||+|+....  ......+.+|+++++.+      +|+||+++++.+..    +
T Consensus         5 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~----~   74 (277)
T cd06641           5 LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQC------DSPYVTKYYGSYLK----D   74 (277)
T ss_pred             hhhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhc------CCCCEeEEEEEEEe----C
Confidence            378889999999999999999889999999986533  23345788899999998      78999999999874    4


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ...++||||+ +++|...+..   ..++...+..++.|++.|+.+||++ |++|+||+|+||++                
T Consensus        75 ~~~~lv~e~~~~~~l~~~i~~---~~~~~~~~~~~~~~l~~~l~~lh~~-~i~h~dl~p~Ni~i----------------  134 (277)
T cd06641          75 TKLWIIMEYLGGGSALDLLEP---GPLDETQIATILREILKGLDYLHSE-KKIHRDIKAANVLL----------------  134 (277)
T ss_pred             CeEEEEEEeCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHccC-CeecCCCCHHhEEE----------------
Confidence            6899999999 7788877753   3488999999999999999999997 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---c
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---F  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~  270 (447)
                                                                              +....++|+|||++......   .
T Consensus       135 --------------------------------------------------------~~~~~~~l~dfg~~~~~~~~~~~~  158 (277)
T cd06641         135 --------------------------------------------------------SEHGEVKLADFGVAGQLTDTQIKR  158 (277)
T ss_pred             --------------------------------------------------------CCCCCEEEeecccceecccchhhh
Confidence                                                                    33567999999988654332   1


Q ss_pred             ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          271 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      ....++..|+|||.+....++.++|+|||||++|+|++|..||....      ...   ....+....            
T Consensus       159 ~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~------~~~---~~~~~~~~~------------  217 (277)
T cd06641         159 NTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELH------PMK---VLFLIPKNN------------  217 (277)
T ss_pred             ccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccc------hHH---HHHHHhcCC------------
Confidence            22357889999999988888999999999999999999999996432      000   000000000            


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                ....+...+.++.++|.+||+.+|.+||++.++++||||...-
T Consensus       218 --------------------------~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~~~~~~~~  260 (277)
T cd06641         218 --------------------------PPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFIVRFA  260 (277)
T ss_pred             --------------------------CCCCCcccCHHHHHHHHHHccCChhhCcCHHHHHhCHHHhhhh
Confidence                                      0012234466889999999999999999999999999998643

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=100.00  E-value=2.7e-35  Score=290.26  Aligned_cols=278  Identities=23%  Similarity=0.285  Sum_probs=194.7

Q ss_pred             CceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEEEecc
Q 013220           48 QFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL  124 (447)
Q Consensus        48 ~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~  124 (447)
                      +++.||.+++..+++.||+|++...   ......+..|+++++.+      .|+||++++++|...    ...+++|||+
T Consensus        12 ~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l------~h~~i~~~~~~~~~~----~~~~~~~e~~   81 (314)
T cd08216          12 DLMIVHLAKHKPTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQL------QHPNILPYVTSFIVD----SELYVVSPLM   81 (314)
T ss_pred             CCceEEEEEecCCCCEEEEEEEeccccchhHHHHHHHHHHHHHhc------CCcchhhhhheeecC----CeEEEEEecc
Confidence            4456666666778999999987644   34456789999999999      789999999998753    6899999999


Q ss_pred             -cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCC
Q 013220          125 -GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSI  203 (447)
Q Consensus       125 -~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (447)
                       ++++.+++.......+++..++.++.|++.||+|||++ +|+||||||+||+++                         
T Consensus        82 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~-~ivH~dlk~~Nili~-------------------------  135 (314)
T cd08216          82 AYGSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSK-GFIHRSVKASHILLS-------------------------  135 (314)
T ss_pred             CCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCcceEEEe-------------------------
Confidence             78888888755445688999999999999999999997 999999999999994                         


Q ss_pred             CCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc----------cccC
Q 013220          204 NGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----------FAEE  273 (447)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~----------~~~~  273 (447)
                                                                     ....++++||+.+......          ....
T Consensus       136 -----------------------------------------------~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~  168 (314)
T cd08216         136 -----------------------------------------------GDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSS  168 (314)
T ss_pred             -----------------------------------------------cCCceEEecCccceeeccccccccccccccccc
Confidence                                                           3567999999988543211          1223


Q ss_pred             CCCCCccChHHhhcC--CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccc
Q 013220          274 IQTRQYRAPEVILRA--GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  351 (447)
Q Consensus       274 ~gt~~y~aPE~l~~~--~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  351 (447)
                      .++..|+|||++...  .++.++|+||+||++|+|++|..||...+.      .  ........+..+..+......   
T Consensus       169 ~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~~------~--~~~~~~~~~~~~~~~~~~~~~---  237 (314)
T cd08216         169 VKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPA------T--QMLLEKVRGTVPCLLDKSTYP---  237 (314)
T ss_pred             cccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCCH------H--HHHHHHHhccCccccccCchh---
Confidence            467789999999763  578999999999999999999999975421      1  111122223322211000000   


Q ss_pred             hhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCCc
Q 013220          352 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR  422 (447)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~~  422 (447)
                        .......... ....................+.++.+|+.+||+.||++|||++|+|+||||+..+...
T Consensus       238 --~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~p~~~~~~~~~  305 (314)
T cd08216         238 --LYEDSMSQSR-SSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLNHSFFKQCKRRN  305 (314)
T ss_pred             --hhcCCcCccc-ccccccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhcCchHhhhcccc
Confidence              0000000000 0000000011111123445577899999999999999999999999999999766333

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=1.4e-35  Score=284.27  Aligned_cols=245  Identities=24%  Similarity=0.416  Sum_probs=194.6

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      .++|++.++||+|+||.||+|... +++.||+|.+.........+.+|+++++.+      +|+||+++++.+..     
T Consensus         5 ~~~~~~~~~ig~G~~g~v~~~~~~-~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~-----   72 (260)
T cd05067           5 RETLKLVKKLGAGQFGEVWMGYYN-GHTKVAIKSLKQGSMSPEAFLAEANLMKQL------QHPRLVRLYAVVTQ-----   72 (260)
T ss_pred             hHHceeeeeeccCccceEEeeecC-CCceEEEEEecCCCCcHHHHHHHHHHHHhc------CCcCeeeEEEEEcc-----
Confidence            478999999999999999999854 567899998887665567888999999999      78899999987643     


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ...+++|||+ +++|.+.+.......++...+..++.|++.||+|||+. |++|+||||+||++                
T Consensus        73 ~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~-~i~H~dl~p~ni~i----------------  135 (260)
T cd05067          73 EPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERK-NYIHRDLRAANILV----------------  135 (260)
T ss_pred             CCcEEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcC-CeecccccHHhEEE----------------
Confidence            4689999999 88999888654445688899999999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-c--
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-F--  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-~--  270 (447)
                                                                              +....++|+|||.+...... .  
T Consensus       136 --------------------------------------------------------~~~~~~~l~dfg~~~~~~~~~~~~  159 (260)
T cd05067         136 --------------------------------------------------------SETLCCKIADFGLARLIEDNEYTA  159 (260)
T ss_pred             --------------------------------------------------------cCCCCEEEccCcceeecCCCCccc
Confidence                                                                    33567999999998655421 1  


Q ss_pred             -ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          271 -AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       271 -~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                       ....++..|+|||.+....++.++|||||||++|++++ |..||...+      .......+..   ..          
T Consensus       160 ~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~------~~~~~~~~~~---~~----------  220 (260)
T cd05067         160 REGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMT------NPEVIQNLER---GY----------  220 (260)
T ss_pred             ccCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCC------hHHHHHHHHc---CC----------
Confidence             12234678999999988888999999999999999998 999997542      1111111100   00          


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                  ....+...+.++.++|.+||+.+|++|||++++++
T Consensus       221 ----------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  255 (260)
T cd05067         221 ----------------------------RMPRPDNCPEELYELMRLCWKEKPEERPTFEYLRS  255 (260)
T ss_pred             ----------------------------CCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence                                        00122334568999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=7.3e-36  Score=298.33  Aligned_cols=251  Identities=25%  Similarity=0.361  Sum_probs=192.4

Q ss_pred             CCceEEEEeecccCceEEEEEEeC-----CCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDT-----RTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~-----~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      .++|++.+.||.|+||.||+|.+.     .+++.||+|+++...  ...+.+..|+++++.+.     +|+||+++++++
T Consensus         6 ~~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~-----~h~niv~~~~~~   80 (337)
T cd05054           6 RDRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIG-----HHLNVVNLLGAC   80 (337)
T ss_pred             HHHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhc-----cCcchhheeeeE
Confidence            468999999999999999999643     345789999876432  23456778999999885     689999999987


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhc--------------------------------------------------
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSR--------------------------------------------------  136 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~--------------------------------------------------  136 (447)
                      ..   .+..++++|||+ +++|.+.+....                                                  
T Consensus        81 ~~---~~~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (337)
T cd05054          81 TK---PGGPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVE  157 (337)
T ss_pred             ec---CCCCEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcc
Confidence            64   346899999999 888988775321                                                  


Q ss_pred             ---------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCC
Q 013220          137 ---------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGS  207 (447)
Q Consensus       137 ---------~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (447)
                               ...+++..+..++.||+.||+|||++ ||+||||||+||++.                             
T Consensus       158 ~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~-~ivHrDikp~Nill~-----------------------------  207 (337)
T cd05054         158 EDEEGDELYKEPLTLEDLISYSFQVARGMEFLASR-KCIHRDLAARNILLS-----------------------------  207 (337)
T ss_pred             cchhhhHHhhcCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCcceEEEe-----------------------------
Confidence                     12478888999999999999999996 999999999999993                             


Q ss_pred             CCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc-----ccCCCCCCccCh
Q 013220          208 TSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF-----AEEIQTRQYRAP  282 (447)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~-----~~~~gt~~y~aP  282 (447)
                                                                 ....++|+|||++.......     ....++..|+||
T Consensus       208 -------------------------------------------~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aP  244 (337)
T cd05054         208 -------------------------------------------ENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAP  244 (337)
T ss_pred             -------------------------------------------CCCcEEEeccccchhcccCcchhhccCCCCCccccCc
Confidence                                                       35679999999997543211     122456789999


Q ss_pred             HHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhh
Q 013220          283 EVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR  361 (447)
Q Consensus       283 E~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  361 (447)
                      |.+.+..++.++|||||||++|+|++ |..||.....     ... ....... +.                        
T Consensus       245 E~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~-----~~~-~~~~~~~-~~------------------------  293 (337)
T cd05054         245 ESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQI-----DEE-FCRRLKE-GT------------------------  293 (337)
T ss_pred             HHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCc-----cHH-HHHHHhc-cC------------------------
Confidence            99999999999999999999999997 9999965321     111 1111000 00                        


Q ss_pred             hhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                     ....+...+.++.+++.+||+.+|++||++.|+++|
T Consensus       294 ---------------~~~~~~~~~~~~~~l~~~cl~~~p~~RPs~~ell~~  329 (337)
T cd05054         294 ---------------RMRAPEYATPEIYSIMLDCWHNNPEDRPTFSELVEI  329 (337)
T ss_pred             ---------------CCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                           001223345688999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.2e-35  Score=282.00  Aligned_cols=246  Identities=24%  Similarity=0.354  Sum_probs=197.7

Q ss_pred             cCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           34 NGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        34 ~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      ....|++.+.||.|+||.||+|...  ++.||+|.++......+.+.+|+.+++.+      .|+||+++++.+..    
T Consensus         4 ~~~~~~~~~~ig~g~~g~v~~~~~~--~~~v~iK~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~----   71 (256)
T cd05039           4 NSKELKLGATIGKGEFGDVMLGDYR--GQKVAVKCLKDDSTAAQAFLAEASVMTTL------RHPNLVQLLGVVLQ----   71 (256)
T ss_pred             ChhhccceeeeecCCCceEEEEEec--CcEEEEEEeccchhHHHHHHHHHHHHHhc------CCcceeeeEEEEcC----
Confidence            3468999999999999999999764  78899999887765567889999999999      78999999998874    


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      ....++||||+ +++|.+++.......+++..+..++.|++.||.|||++ |++|+||||+||++               
T Consensus        72 ~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~-~i~H~di~p~Nili---------------  135 (256)
T cd05039          72 GNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEK-NFVHRDLAARNVLV---------------  135 (256)
T ss_pred             CCCeEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CccchhcccceEEE---------------
Confidence            36899999999 78999988765444689999999999999999999997 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccccc
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAE  272 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~~  272 (447)
                                                                               +..+.++|+|||.+.........
T Consensus       136 ---------------------------------------------------------~~~~~~~l~d~g~~~~~~~~~~~  158 (256)
T cd05039         136 ---------------------------------------------------------SEDLVAKVSDFGLAKEASQGQDS  158 (256)
T ss_pred             ---------------------------------------------------------eCCCCEEEccccccccccccccc
Confidence                                                                     33567999999999766544443


Q ss_pred             CCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccc
Q 013220          273 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  351 (447)
Q Consensus       273 ~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  351 (447)
                      ...+..|+|||.+....++.++|+|||||++|++++ |..||...+      .. .+   ...+...             
T Consensus       159 ~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~------~~-~~---~~~~~~~-------------  215 (256)
T cd05039         159 GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP------LK-DV---VPHVEKG-------------  215 (256)
T ss_pred             CCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCC------HH-HH---HHHHhcC-------------
Confidence            445678999999988888999999999999999997 999986442      11 11   1100000             


Q ss_pred             hhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          352 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                              .....+...++.+.++|.+||..+|++|||+.++++
T Consensus       216 ------------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  251 (256)
T cd05039         216 ------------------------YRMEAPEGCPPEVYKVMKDCWELDPAKRPTFKQLRE  251 (256)
T ss_pred             ------------------------CCCCCccCCCHHHHHHHHHHhccChhhCcCHHHHHH
Confidence                                    000122334678899999999999999999999975

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=6.7e-38  Score=285.55  Aligned_cols=291  Identities=25%  Similarity=0.399  Sum_probs=221.1

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEech---hHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKS---AAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~---~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++.|.-..+||+|.||.||+|+..++++.||+|..-.   .+.......+|+++|+.+      .|+|++.++..+....
T Consensus        16 ~~~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~l------kHenv~nliEic~tk~   89 (376)
T KOG0669|consen   16 VSKYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLL------KHENVVNLIEICRTKA   89 (376)
T ss_pred             chHHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHh------cchhHHHHHHHHhhcc
Confidence            3678888999999999999999999999999884332   334455778899999999      7788888888766533


Q ss_pred             CC----cceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCc
Q 013220          112 PN----GQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       112 ~~----~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                      -.    ...+|+||.+|..+|.-++... ...++..++..++.++++||.|+|+. .|+|||+|+.|+|+          
T Consensus        90 Tp~~r~r~t~ylVf~~cehDLaGlLsn~-~vr~sls~Ikk~Mk~Lm~GL~~iHr~-kilHRDmKaaNvLI----------  157 (376)
T KOG0669|consen   90 TPTNRDRATFYLVFDFCEHDLAGLLSNR-KVRFSLSEIKKVMKGLMNGLYYIHRN-KILHRDMKAANVLI----------  157 (376)
T ss_pred             CCcccccceeeeeHHHhhhhHHHHhcCc-cccccHHHHHHHHHHHHHHHHHHHHh-hHHhhcccHhhEEE----------
Confidence            21    2359999999999999888543 34589999999999999999999996 99999999999999          


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                    +.++.+||+|||++....
T Consensus       158 --------------------------------------------------------------t~dgilklADFGlar~fs  175 (376)
T KOG0669|consen  158 --------------------------------------------------------------TKDGILKLADFGLARAFS  175 (376)
T ss_pred             --------------------------------------------------------------cCCceEEeecccccccee
Confidence                                                                          557889999999995443


Q ss_pred             cc-------cccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCC
Q 013220          268 KQ-------FAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMP  339 (447)
Q Consensus       268 ~~-------~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~  339 (447)
                      .+       .+.++-|.+|++||.+.+. .|+++.|||..||||.+|+++...|.+.      +...++..+..++|...
T Consensus       176 ~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgn------teqqql~~Is~LcGs~t  249 (376)
T KOG0669|consen  176 TSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGN------TEQQQLHLISQLCGSIT  249 (376)
T ss_pred             cccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCC------hHHHHHHHHHHHhccCC
Confidence            22       2334669999999999986 5899999999999999999999988876      57888999999999988


Q ss_pred             HHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          340 RKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                      .+++..-... +.+..... .......++.....+.     +-.-.++..+|+.+||..||++|++++++|+|.||.-.
T Consensus       250 kevWP~~d~l-pL~~sie~-ePl~~~~~rkv~n~~k-----p~~kd~~a~dLle~ll~~DP~kR~~ad~alnh~~F~kd  321 (376)
T KOG0669|consen  250 KEVWPNVDNL-PLYQSIEL-EPLPKGQKRKVKNRLK-----PYVKDDEALDLLEKLLKLDPTKRIDADQALNHDFFWKD  321 (376)
T ss_pred             cccCCCcccc-hHHHhccC-CCCCcchhhhhhhhcc-----cccCChhHHHHHHHHhccCcccCcchHhhhchhhhhcC
Confidence            7763222211 11211100 0001111111111111     11113467799999999999999999999999999753

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=1.2e-35  Score=288.02  Aligned_cols=247  Identities=21%  Similarity=0.353  Sum_probs=194.4

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCC-----eEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTS-----SYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~-----~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      ++|++.+.||+|+||.||+|.+...+     ..||+|.++...  .....+.+|+++++.+      +|++|+++++++.
T Consensus         5 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l------~h~~i~~~~~~~~   78 (283)
T cd05048           5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDL------QHPNIVCLLGVCT   78 (283)
T ss_pred             HHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhc------CCcccceEEEEEc
Confidence            57999999999999999999876544     789999876432  3345688999999998      7899999999887


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhcc--------------CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCC
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSRY--------------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPE  173 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~--------------~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~  173 (447)
                      ..    ...+++|||+ +++|.+++.....              ..+++..+..++.|++.||+|||++ |++|+||||+
T Consensus        79 ~~----~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~-~i~H~dlkp~  153 (283)
T cd05048          79 KE----QPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSH-HFVHRDLAAR  153 (283)
T ss_pred             CC----CceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC-Ceeccccccc
Confidence            43    5789999999 7899888864321              3477888999999999999999997 9999999999


Q ss_pred             CeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCccc
Q 013220          174 NILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDM  253 (447)
Q Consensus       174 Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (447)
                      ||++                                                                        +...
T Consensus       154 Nil~------------------------------------------------------------------------~~~~  161 (283)
T cd05048         154 NCLV------------------------------------------------------------------------GEGL  161 (283)
T ss_pred             eEEE------------------------------------------------------------------------cCCC
Confidence            9999                                                                        3356


Q ss_pred             ceeEeecCcccccccc-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHH
Q 013220          254 RCKVVDFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDH  327 (447)
Q Consensus       254 ~~kL~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~  327 (447)
                      .++|+|||++......     .....+++.|+|||.+.+..++.++|+|||||++|+|++ |..||.+.+      ....
T Consensus       162 ~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~------~~~~  235 (283)
T cd05048         162 TVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFS------NQEV  235 (283)
T ss_pred             cEEECCCcceeeccccccccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCC------HHHH
Confidence            7999999998654222     123356788999999988889999999999999999997 999997642      1111


Q ss_pred             HHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChH
Q 013220          328 LALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQ  407 (447)
Q Consensus       328 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~  407 (447)
                      ...+..   ..                                      ....+...+.++.+|+.+||+.||.+|||+.
T Consensus       236 ~~~i~~---~~--------------------------------------~~~~~~~~~~~~~~l~~~c~~~~p~~Rp~~~  274 (283)
T cd05048         236 IEMIRS---RQ--------------------------------------LLPCPEDCPARVYALMIECWNEIPARRPRFK  274 (283)
T ss_pred             HHHHHc---CC--------------------------------------cCCCcccCCHHHHHHHHHHccCChhhCcCHH
Confidence            111100   00                                      0012344577899999999999999999999


Q ss_pred             HHhcC
Q 013220          408 QCLQH  412 (447)
Q Consensus       408 elL~h  412 (447)
                      |++++
T Consensus       275 ~i~~~  279 (283)
T cd05048         275 DIHTR  279 (283)
T ss_pred             HHHHH
Confidence            99875

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=100.00  E-value=3.7e-35  Score=277.59  Aligned_cols=249  Identities=33%  Similarity=0.552  Sum_probs=200.8

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH-hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ-FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~-~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      .|.+.+.||+|++|.||++.+..++..|++|++..... ....+.+|+++++.+      .|++|+++++.+...    .
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~~----~   70 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKC------KHPNIVKYYGSYLKK----D   70 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhC------CCCCEeEEEEEEecC----C
Confidence            38889999999999999999988899999998766543 467888999999999      788999999988754    6


Q ss_pred             eEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          116 HLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       116 ~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      ..+++|||+ +++|.+++.... ..+++..+..++.|++.||++||.. |++|+||+|+||+++                
T Consensus        71 ~~~l~~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lh~~-~i~h~dl~p~ni~i~----------------  132 (253)
T cd05122          71 ELWIVMEFCSGGSLKDLLKSTN-QTLTESQIAYVCKELLKGLEYLHSN-GIIHRDIKAANILLT----------------  132 (253)
T ss_pred             eEEEEEecCCCCcHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhcC-CEecCCCCHHHEEEc----------------
Confidence            899999999 688988876542 4589999999999999999999996 999999999999993                


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc--cc
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF--AE  272 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~--~~  272 (447)
                                                                              ....++|+|||.+.......  ..
T Consensus       133 --------------------------------------------------------~~~~~~l~d~~~~~~~~~~~~~~~  156 (253)
T cd05122         133 --------------------------------------------------------SDGEVKLIDFGLSAQLSDTKARNT  156 (253)
T ss_pred             --------------------------------------------------------cCCeEEEeeccccccccccccccc
Confidence                                                                    35679999999987655432  44


Q ss_pred             CCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccch
Q 013220          273 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  352 (447)
Q Consensus       273 ~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  352 (447)
                      ..++..|+|||.+.+..++.++|+||||+++|+|++|..||...+      .   ...+..........           
T Consensus       157 ~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~------~---~~~~~~~~~~~~~~-----------  216 (253)
T cd05122         157 MVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELP------P---MKALFKIATNGPPG-----------  216 (253)
T ss_pred             eecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCc------h---HHHHHHHHhcCCCC-----------
Confidence            568899999999988888999999999999999999999996542      1   11111110000000           


Q ss_pred             hcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcc
Q 013220          353 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW  414 (447)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~  414 (447)
                                               ...+...+..+.++|.+||+.||++|||+.|+|+|||
T Consensus       217 -------------------------~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~~~l~~~~  253 (253)
T cd05122         217 -------------------------LRNPEKWSDEFKDFLKKCLQKNPEKRPTAEQLLKHPF  253 (253)
T ss_pred             -------------------------cCcccccCHHHHHHHHHHccCChhhCCCHHHHhcCCC
Confidence                                     0011112568999999999999999999999999999

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=100.00  E-value=3.2e-35  Score=286.50  Aligned_cols=254  Identities=22%  Similarity=0.371  Sum_probs=194.4

Q ss_pred             CCceEEEEeecccCceEEEEEEeC-----CCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDT-----RTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~-----~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      .++|++.++||+|+||.||+|.+.     ..+..||+|.+....  .....+.+|+.+++.+      +|+||+++++.+
T Consensus         5 ~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~   78 (288)
T cd05061           5 REKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGF------TCHHVVRLLGVV   78 (288)
T ss_pred             HHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhC------CCCCeeeEEEEE
Confidence            478999999999999999999654     235689999865432  2234577899999998      789999999987


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhcc--------CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEee
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSRY--------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV  178 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~--------~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~  178 (447)
                      ...    ...++||||+ +++|.+.+.....        ..+....+..++.|++.||.|||++ +|+||||||+||++.
T Consensus        79 ~~~----~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~-~i~H~dikp~nili~  153 (288)
T cd05061          79 SKG----QPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAK-KFVHRDLAARNCMVA  153 (288)
T ss_pred             cCC----CCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhC-CCcCCCCChheEEEc
Confidence            753    5789999999 8899998864221        2245667889999999999999997 999999999999993


Q ss_pred             ecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEe
Q 013220          179 STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVV  258 (447)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~  258 (447)
                                                                                              .+..++|+
T Consensus       154 ------------------------------------------------------------------------~~~~~~L~  161 (288)
T cd05061         154 ------------------------------------------------------------------------HDFTVKIG  161 (288)
T ss_pred             ------------------------------------------------------------------------CCCcEEEC
Confidence                                                                                    35679999


Q ss_pred             ecCccccccccc-----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHH
Q 013220          259 DFGNACRANKQF-----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMM  332 (447)
Q Consensus       259 Dfg~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~  332 (447)
                      |||++.......     ....++..|+|||.+.+..++.++|+|||||++|+|++ |..||...+      .......+.
T Consensus       162 Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~------~~~~~~~~~  235 (288)
T cd05061         162 DFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLS------NEQVLKFVM  235 (288)
T ss_pred             cCCccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHH
Confidence            999986443211     12244678999999988889999999999999999998 788886542      111111110


Q ss_pred             HHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc-
Q 013220          333 ELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ-  411 (447)
Q Consensus       333 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~-  411 (447)
                      .  +.                                       ....+...+..+.+++.+||+.||++|||+.++++ 
T Consensus       236 ~--~~---------------------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~  274 (288)
T cd05061         236 D--GG---------------------------------------YLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNL  274 (288)
T ss_pred             c--CC---------------------------------------CCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence            0  00                                       00122334568999999999999999999999986 


Q ss_pred             -----Ccccccc
Q 013220          412 -----HPWLSLR  418 (447)
Q Consensus       412 -----hp~f~~~  418 (447)
                           ||||+..
T Consensus       275 l~~~~~~~~~~~  286 (288)
T cd05061         275 LKDDLHPSFPEV  286 (288)
T ss_pred             HHhhcCCCCCCC
Confidence                 9999864

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=8.6e-36  Score=288.38  Aligned_cols=247  Identities=22%  Similarity=0.362  Sum_probs=194.3

Q ss_pred             CCceEEEEeecccCceEEEEEEeC-----CCCeEEEEEEechhHH--hHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDT-----RTSSYVALKIQKSAAQ--FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~-----~~~~~vaiK~~~~~~~--~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      .++|.+.+.||+|+||.||+|++.     .++..||+|.++....  ..+.+.+|+++++.+      .|+||+++++.+
T Consensus         4 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~   77 (280)
T cd05049           4 RDTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNF------QHENIVKFYGVC   77 (280)
T ss_pred             hHHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhc------CCCCchheeeEE
Confidence            467999999999999999999764     3468899998765432  356788999999999      788999999998


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhc------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCC
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSR------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPEN  174 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~------------~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~N  174 (447)
                      ...    ...++||||+ +++|.+++....            ...+++..+..++.|++.||++||++ |++||||||+|
T Consensus        78 ~~~----~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~-~i~h~dlkp~n  152 (280)
T cd05049          78 TEG----DPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQ-HFVHRDLATRN  152 (280)
T ss_pred             ecC----CCeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhC-Ceeccccccce
Confidence            753    6899999999 889998886432            13377888999999999999999997 99999999999


Q ss_pred             eEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccc
Q 013220          175 ILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMR  254 (447)
Q Consensus       175 ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (447)
                      |++                                                                        +....
T Consensus       153 ili------------------------------------------------------------------------~~~~~  160 (280)
T cd05049         153 CLV------------------------------------------------------------------------GYDLV  160 (280)
T ss_pred             EEE------------------------------------------------------------------------cCCCe
Confidence            999                                                                        34577


Q ss_pred             eeEeecCcccccccc-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHH
Q 013220          255 CKVVDFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHL  328 (447)
Q Consensus       255 ~kL~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~  328 (447)
                      ++|+|||.+......     .....++..|+|||++.+..++.++|||||||++|+|++ |..||...+      .....
T Consensus       161 ~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~------~~~~~  234 (280)
T cd05049         161 VKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLS------NEEVI  234 (280)
T ss_pred             EEECCcccceecccCcceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCC------HHHHH
Confidence            999999998643221     122345678999999999899999999999999999998 999996542      11111


Q ss_pred             HHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHH
Q 013220          329 ALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQ  408 (447)
Q Consensus       329 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~e  408 (447)
                      ..+.  .+..                                       ...+...+..+.+|+.+||+.||++|||+.|
T Consensus       235 ~~~~--~~~~---------------------------------------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~e  273 (280)
T cd05049         235 ECIT--QGRL---------------------------------------LQRPRTCPSEVYDIMLGCWKRDPQQRINIKD  273 (280)
T ss_pred             HHHH--cCCc---------------------------------------CCCCCCCCHHHHHHHHHHcCCCcccCCCHHH
Confidence            1111  0000                                       0112334668899999999999999999999


Q ss_pred             Hhc
Q 013220          409 CLQ  411 (447)
Q Consensus       409 lL~  411 (447)
                      +++
T Consensus       274 il~  276 (280)
T cd05049         274 IHE  276 (280)
T ss_pred             HHH
Confidence            975

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=100.00  E-value=8.2e-36  Score=292.45  Aligned_cols=251  Identities=28%  Similarity=0.481  Sum_probs=198.2

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      .|....+||.|+||.||+|.+..++..||+|++.... .....+.+|+.+++.+      +|+||+++++.+..    +.
T Consensus        22 ~~~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l------~hp~i~~~~~~~~~----~~   91 (297)
T cd06659          22 LLENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDY------QHQNVVEMYKSYLV----GE   91 (297)
T ss_pred             hHHhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhC------CCCchhhhhhheee----CC
Confidence            3555668999999999999998899999999875432 2345678899999888      78999999998874    36


Q ss_pred             eEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          116 HLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       116 ~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      ..+++|||+ +++|..++..   ..+++..+..++.|++.||+|||+. ||+|+||||+||++                 
T Consensus        92 ~~~iv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~L~~LH~~-~ivH~dl~p~Nill-----------------  150 (297)
T cd06659          92 ELWVLMEFLQGGALTDIVSQ---TRLNEEQIATVCESVLQALCYLHSQ-GVIHRDIKSDSILL-----------------  150 (297)
T ss_pred             eEEEEEecCCCCCHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHeEE-----------------
Confidence            899999999 7788876643   3488999999999999999999996 99999999999999                 


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---cc
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FA  271 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~~  271 (447)
                                                                             +....++|+|||++......   ..
T Consensus       151 -------------------------------------------------------~~~~~~kL~dfg~~~~~~~~~~~~~  175 (297)
T cd06659         151 -------------------------------------------------------TLDGRVKLSDFGFCAQISKDVPKRK  175 (297)
T ss_pred             -------------------------------------------------------ccCCcEEEeechhHhhccccccccc
Confidence                                                                   34567999999998644322   22


Q ss_pred             cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccc
Q 013220          272 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  351 (447)
Q Consensus       272 ~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  351 (447)
                      ...++..|+|||++.+..++.++|+|||||++|+|++|..||...+      ....+   ..+.+..+..          
T Consensus       176 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~------~~~~~---~~~~~~~~~~----------  236 (297)
T cd06659         176 SLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDS------PVQAM---KRLRDSPPPK----------  236 (297)
T ss_pred             ceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHH---HHHhccCCCC----------
Confidence            3468899999999988889999999999999999999999996542      11111   1111110000          


Q ss_pred             hhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          352 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                                                .......+..+.++|.+||+.+|++|||++++++||||..-
T Consensus       237 --------------------------~~~~~~~~~~l~~~i~~~l~~~P~~Rps~~~ll~~~~~~~~  277 (297)
T cd06659         237 --------------------------LKNAHKISPVLRDFLERMLTREPQERATAQELLDHPFLLQT  277 (297)
T ss_pred             --------------------------ccccCCCCHHHHHHHHHHhcCCcccCcCHHHHhhChhhccC
Confidence                                      00112335678899999999999999999999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=100.00  E-value=3.3e-35  Score=279.41  Aligned_cols=249  Identities=26%  Similarity=0.438  Sum_probs=201.6

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      +|.+.+.||.|+||.||++.+..++..|++|.+....   .....+.+|+++++.+      +|+|++++++.+...   
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~~~~~~~~~~~~---   71 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKL------NHPNIIKYYESFEEK---   71 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhc------CCCChhheEEEEecC---
Confidence            5899999999999999999999899999999876542   3456788899999999      788999999988753   


Q ss_pred             cceEEEEEecc-cccHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSR--YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~--~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                       ...+++|||+ +++|...+....  ...+++..+..++.+++.||.+||+. |++|+||+|+||++             
T Consensus        72 -~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~-~~~H~dl~~~nil~-------------  136 (258)
T cd08215          72 -GKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSR-KILHRDIKPQNIFL-------------  136 (258)
T ss_pred             -CEEEEEEEecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhC-CEecccCChHHeEE-------------
Confidence             7899999999 778988886543  35689999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-  269 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-  269 (447)
                                                                                 +....++|+|||.+...... 
T Consensus       137 -----------------------------------------------------------~~~~~~~l~d~~~~~~~~~~~  157 (258)
T cd08215         137 -----------------------------------------------------------TSNGLVKLGDFGISKVLSSTV  157 (258)
T ss_pred             -----------------------------------------------------------cCCCcEEECCccceeecccCc
Confidence                                                                       33567999999998654432 


Q ss_pred             --cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          270 --FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       270 --~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                        .....+++.|+|||.+.+..++.++|+||+|+++++|++|..||...+      ........   ....         
T Consensus       158 ~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~------~~~~~~~~---~~~~---------  219 (258)
T cd08215         158 DLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGEN------LLELALKI---LKGQ---------  219 (258)
T ss_pred             ceecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCc------HHHHHHHH---hcCC---------
Confidence              223467889999999988889999999999999999999999996442      11111110   0000         


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                                                   ...++...+..+.+++.+||..+|++|||+.++|+||||
T Consensus       220 -----------------------------~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~~~~  258 (258)
T cd08215         220 -----------------------------YPPIPSQYSSELRNLVSSLLQKDPEERPSIAQILQSPFI  258 (258)
T ss_pred             -----------------------------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHhcCCCC
Confidence                                         001223446688999999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=2.1e-35  Score=283.03  Aligned_cols=245  Identities=24%  Similarity=0.387  Sum_probs=192.7

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      .++|++.++||+|+||.||+|.+. .+..+|+|.+.......+.+.+|+++++.+      +|++|+++++.+..     
T Consensus         5 ~~~~~~~~~ig~g~~~~v~~~~~~-~~~~~~~k~~~~~~~~~~~~~~E~~~l~~l------~~~~i~~~~~~~~~-----   72 (260)
T cd05070           5 RESLQLIKKLGNGQFGEVWMGTWN-GNTKVAVKTLKPGTMSPESFLEEAQIMKKL------RHDKLVQLYAVVSE-----   72 (260)
T ss_pred             hHHhhhhheeccccCceEEEEEec-CCceeEEEEecCCCCCHHHHHHHHHHHHhc------CCCceEEEEeEECC-----
Confidence            368999999999999999999765 556799998876555556789999999999      78899999987643     


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ...+++|||+ +++|.+.+.......+++..+..++.|++.||+|||++ ||+|+||||+||++.               
T Consensus        73 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~-~i~H~di~p~Nili~---------------  136 (260)
T cd05070          73 EPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERM-NYIHRDLRSANILVG---------------  136 (260)
T ss_pred             CCcEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCccceEEEe---------------
Confidence            3578999999 78999888654444588999999999999999999996 999999999999993               


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccc--
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA--  271 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~--  271 (447)
                                                                               ....++|+|||.+........  
T Consensus       137 ---------------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~  159 (260)
T cd05070         137 ---------------------------------------------------------DGLVCKIADFGLARLIEDNEYTA  159 (260)
T ss_pred             ---------------------------------------------------------CCceEEeCCceeeeeccCccccc
Confidence                                                                     356799999999865433211  


Q ss_pred             --cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          272 --EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       272 --~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                        ...++..|+|||.+.+..++.++|+|||||++|+|++ |..||...+      .......+.   ...          
T Consensus       160 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~------~~~~~~~~~---~~~----------  220 (260)
T cd05070         160 RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMN------NREVLEQVE---RGY----------  220 (260)
T ss_pred             ccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCC------HHHHHHHHH---cCC----------
Confidence              1234567999999988889999999999999999998 889996542      111111110   000          


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                  ....+...+..+.+|+.+||+.+|++|||++++++
T Consensus       221 ----------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~  255 (260)
T cd05070         221 ----------------------------RMPCPQDCPISLHELMLQCWKKDPEERPTFEYLQS  255 (260)
T ss_pred             ----------------------------CCCCCCcCCHHHHHHHHHHcccCcccCcCHHHHHH
Confidence                                        01123344668999999999999999999999873

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=3.9e-35  Score=281.32  Aligned_cols=245  Identities=25%  Similarity=0.396  Sum_probs=192.6

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      .++|.+.++||+|++|.||+|.+..+ ..+|+|.+.......+.+.+|+++++.+      .|++|+++++++..     
T Consensus         5 ~~~~~~~~~ig~g~~~~v~~~~~~~~-~~~~lK~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~-----   72 (260)
T cd05069           5 RESLRLDVKLGQGCFGEVWMGTWNGT-TKVAIKTLKPGTMMPEAFLQEAQIMKKL------RHDKLVPLYAVVSE-----   72 (260)
T ss_pred             hHHeeeeeeecCcCCCeEEEEEEcCC-ceEEEEEcccCCccHHHHHHHHHHHHhC------CCCCeeeEEEEEcC-----
Confidence            46899999999999999999987655 4589998776555556788999999999      78899999887642     


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ...+++|||+ +++|.+.+.......+++..+..++.|++.||+|||+. ||+|+||||+||++                
T Consensus        73 ~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~-~i~H~dl~~~Nill----------------  135 (260)
T cd05069          73 EPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERM-NYIHRDLRAANILV----------------  135 (260)
T ss_pred             CCcEEEEEcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhC-CEeecccCcceEEE----------------
Confidence            4578999999 77999888654444578899999999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc---
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF---  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~---  270 (447)
                                                                              +....++|+|||.+.......   
T Consensus       136 --------------------------------------------------------~~~~~~~l~dfg~~~~~~~~~~~~  159 (260)
T cd05069         136 --------------------------------------------------------GDNLVCKIADFGLARLIEDNEYTA  159 (260)
T ss_pred             --------------------------------------------------------cCCCeEEECCCccceEccCCcccc
Confidence                                                                    335679999999986543221   


Q ss_pred             -ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          271 -AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       271 -~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                       ....++..|+|||.+.+..++.++|+|||||++|+|++ |..||.+..      +......+.   ...          
T Consensus       160 ~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~------~~~~~~~~~---~~~----------  220 (260)
T cd05069         160 RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMV------NREVLEQVE---RGY----------  220 (260)
T ss_pred             cCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHH---cCC----------
Confidence             11234678999999988889999999999999999998 899997542      111111111   000          


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                  ....+...+..+.+++.+||..||++||+++++++
T Consensus       221 ----------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  255 (260)
T cd05069         221 ----------------------------RMPCPQGCPESLHELMKLCWKKDPDERPTFEYIQS  255 (260)
T ss_pred             ----------------------------CCCCCcccCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence                                        00123344678999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=2.4e-35  Score=282.01  Aligned_cols=244  Identities=25%  Similarity=0.373  Sum_probs=191.4

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      .+|++.++||+|+||.||+++... +..+|+|.+.........+.+|+++++.+      +|+||+++++++...    .
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~-~~~~a~K~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~~----~   72 (256)
T cd05114           4 SELTFMKELGSGQFGVVHLGKWRA-QIKVAIKAINEGAMSEEDFIEEAKVMMKL------SHPKLVQLYGVCTQQ----K   72 (256)
T ss_pred             HHcEEeeEecCCcCceEEEEEecc-CceEEEEecccCCccHHHHHHHHHHHHHC------CCCCceeEEEEEccC----C
Confidence            569999999999999999998754 56799998776555456788899999999      789999999988743    6


Q ss_pred             eEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          116 HLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       116 ~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      ..++||||+ +++|.+.+.... ..+++..+..++.|++.||+|||++ ||+|+||||+||++                 
T Consensus        73 ~~~iv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dl~p~ni~i-----------------  133 (256)
T cd05114          73 PLYIVTEFMENGCLLNYLRQRQ-GKLSKDMLLSMCQDVCEGMEYLERN-SFIHRDLAARNCLV-----------------  133 (256)
T ss_pred             CEEEEEEcCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHHHC-CccccccCcceEEE-----------------
Confidence            799999999 889988876433 3478899999999999999999996 99999999999999                 


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc----
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF----  270 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~----  270 (447)
                                                                             +....++|+|||.+.......    
T Consensus       134 -------------------------------------------------------~~~~~~kl~d~g~~~~~~~~~~~~~  158 (256)
T cd05114         134 -------------------------------------------------------SSTGVVKVSDFGMTRYVLDDEYTSS  158 (256)
T ss_pred             -------------------------------------------------------cCCCeEEECCCCCccccCCCceecc
Confidence                                                                   335679999999886543211    


Q ss_pred             ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      ....++..|+|||.+.+..++.++|+|||||++|+|++ |+.||...+      .......+.+  +.            
T Consensus       159 ~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~------~~~~~~~i~~--~~------------  218 (256)
T cd05114         159 SGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKS------NYEVVEMISR--GF------------  218 (256)
T ss_pred             CCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCC------HHHHHHHHHC--CC------------
Confidence            11234568999999988889999999999999999999 899996542      1111111110  00            


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                 ....+...+..+.+++.+||+.||++|||++++++
T Consensus       219 ---------------------------~~~~~~~~~~~~~~li~~c~~~~p~~Rps~~~l~~  253 (256)
T cd05114         219 ---------------------------RLYRPKLASMTVYEVMYSCWHEKPEGRPTFAELLR  253 (256)
T ss_pred             ---------------------------CCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence                                       00012223557889999999999999999999985

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=2.7e-35  Score=281.61  Aligned_cols=245  Identities=21%  Similarity=0.287  Sum_probs=193.5

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      ..+|++.+.||+|+||.||+|...  +..||+|..+.+.. .+.+.+|+.+++.+      .|++|+++++++..   .+
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~--~~~~~~k~~~~~~~-~~~~~~e~~~l~~l------~~~~i~~~~~~~~~---~~   72 (256)
T cd05082           5 MKELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKNDAT-AQAFLAEASVMTQL------RHSNLVQLLGVIVE---EK   72 (256)
T ss_pred             HHhCeeeeeecccCCCeEEEEEEc--CCcEEEEEeCCCch-HHHHHHHHHHHHhC------CCCCeeeEEEEEEc---CC
Confidence            467999999999999999999654  77899998875543 45788999999999      78899999987654   23


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ...+++|||+ +++|.+.+.......+++..+..++.|++.||+|||++ |++||||||+||++                
T Consensus        73 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dlkp~nil~----------------  135 (256)
T cd05082          73 GGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEAN-NFVHRDLAARNVLV----------------  135 (256)
T ss_pred             CceEEEEECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CEeccccchheEEE----------------
Confidence            5789999999 78999888655444578899999999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccccC
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEE  273 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~~~  273 (447)
                                                                              +.+..++|+|||++..........
T Consensus       136 --------------------------------------------------------~~~~~~kl~dfg~~~~~~~~~~~~  159 (256)
T cd05082         136 --------------------------------------------------------SEDNVAKVSDFGLTKEASSTQDTG  159 (256)
T ss_pred             --------------------------------------------------------cCCCcEEecCCccceeccccCCCC
Confidence                                                                    335679999999987554433334


Q ss_pred             CCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccch
Q 013220          274 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  352 (447)
Q Consensus       274 ~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  352 (447)
                      ..+..|+|||++.+..++.++|||||||++|+|++ |..||...+       ...   ....+...              
T Consensus       160 ~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~-------~~~---~~~~~~~~--------------  215 (256)
T cd05082         160 KLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP-------LKD---VVPRVEKG--------------  215 (256)
T ss_pred             ccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCC-------HHH---HHHHHhcC--------------
Confidence            45678999999988889999999999999999997 999986432       111   11100000              


Q ss_pred             hcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          353 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                             .....+...+..+.+++.+||+.+|++|||+.++++
T Consensus       216 -----------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~  251 (256)
T cd05082         216 -----------------------YKMDAPDGCPPVVYDVMKQCWHLDAATRPSFLQLRE  251 (256)
T ss_pred             -----------------------CCCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence                                   001122344678899999999999999999999975

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=100.00  E-value=3.8e-35  Score=289.89  Aligned_cols=253  Identities=26%  Similarity=0.390  Sum_probs=197.6

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh----HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA----AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~----~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ..|...++||+|+||+||+|++..++..|++|.+...    ......+.+|+++++.+      +|+|++++++++..  
T Consensus        21 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~--   92 (313)
T cd06633          21 EIFVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQL------KHPNTIEYKGCYLK--   92 (313)
T ss_pred             HHhhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhC------CCCCCccEEEEEEe--
Confidence            3477788999999999999999999999999987532    22334677899999998      78999999998875  


Q ss_pred             CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          112 PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       112 ~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                        +...|+||||+.+++.+.+.... ..+++..+..++.|++.||+|||++ |++|+||+|+||++              
T Consensus        93 --~~~~~lv~e~~~~~l~~~l~~~~-~~l~~~~~~~~~~qi~~al~~LH~~-gi~H~dl~p~nili--------------  154 (313)
T cd06633          93 --EHTAWLVMEYCLGSASDLLEVHK-KPLQEVEIAAITHGALQGLAYLHSH-NMIHRDIKAGNILL--------------  154 (313)
T ss_pred             --CCEEEEEEecCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCChhhEEE--------------
Confidence              36899999999778877765432 4588999999999999999999996 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccc
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA  271 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~  271 (447)
                                                                                .....++|+|||.+.... ...
T Consensus       155 ----------------------------------------------------------~~~~~~kL~dfg~~~~~~-~~~  175 (313)
T cd06633         155 ----------------------------------------------------------TEPGQVKLADFGSASKSS-PAN  175 (313)
T ss_pred             ----------------------------------------------------------CCCCCEEEeecCCCcccC-CCC
Confidence                                                                      335569999999885432 223


Q ss_pred             cCCCCCCccChHHhh---cCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          272 EEIQTRQYRAPEVIL---RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       272 ~~~gt~~y~aPE~l~---~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      ...++..|+|||.+.   ...++.++|+|||||++|+|++|..||...+      ....+..+..  +..+.        
T Consensus       176 ~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~------~~~~~~~~~~--~~~~~--------  239 (313)
T cd06633         176 SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN------AMSALYHIAQ--NDSPT--------  239 (313)
T ss_pred             CccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHh--cCCCC--------
Confidence            457889999999985   3457889999999999999999999996542      1111111100  00000        


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                    ......+..+.+|+.+||+.+|++||++.++++||||+...
T Consensus       240 ------------------------------~~~~~~~~~l~~li~~~l~~~P~~Rp~~~~~l~~~~~~~~~  280 (313)
T cd06633         240 ------------------------------LQSNEWTDSFRGFVDYCLQKIPQERPASAELLRHDFVRRDR  280 (313)
T ss_pred             ------------------------------CCccccCHHHHHHHHHHccCChhhCcCHHHHhcCcccCCCc
Confidence                                          00112345788999999999999999999999999999654

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.8e-35  Score=278.18  Aligned_cols=247  Identities=30%  Similarity=0.512  Sum_probs=202.1

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      +|++.+.||+|++|.||+|++..+++.|++|.+....   .....+.+|+++++.+      .|++++++++.+..    
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~----   70 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNL------KHPNIVKYIGSIET----   70 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhC------CCCCccEEEEEEEe----
Confidence            5899999999999999999999899999999876654   3456788999999999      78889999988774    


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      +...+++|||+ +++|.+.+...  ..+++..+..++.|++.||.+||++ ||+|+||+|+||+++              
T Consensus        71 ~~~~~~v~e~~~~~~L~~~~~~~--~~l~~~~~~~~~~~i~~~l~~lH~~-~i~H~dl~p~ni~i~--------------  133 (254)
T cd06627          71 SDSLYIILEYAENGSLRQIIKKF--GPFPESLVAVYVYQVLQGLAYLHEQ-GVIHRDIKAANILTT--------------  133 (254)
T ss_pred             CCEEEEEEecCCCCcHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHhhC-CcccCCCCHHHEEEC--------------
Confidence            36899999999 77898887654  4589999999999999999999996 999999999999993              


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccc-
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA-  271 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~-  271 (447)
                                                                                ....++|+|||.+........ 
T Consensus       134 ----------------------------------------------------------~~~~~~l~d~~~~~~~~~~~~~  155 (254)
T cd06627         134 ----------------------------------------------------------KDGVVKLADFGVATKLNDVSKD  155 (254)
T ss_pred             ----------------------------------------------------------CCCCEEEeccccceecCCCccc
Confidence                                                                      356799999999976543322 


Q ss_pred             --cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          272 --EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       272 --~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                        ...++..|+|||.+.+..++.++|+||||+++|+|++|..||...+         ....+.+..              
T Consensus       156 ~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~---------~~~~~~~~~--------------  212 (254)
T cd06627         156 DASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLN---------PMAALFRIV--------------  212 (254)
T ss_pred             ccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCcc---------HHHHHHHHh--------------
Confidence              3467889999999988778899999999999999999999996442         111111110              


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                                              ......++...+..+.+++.+||+.+|++|||+.+++.||||
T Consensus       213 ------------------------~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~~~~~  254 (254)
T cd06627         213 ------------------------QDDHPPLPEGISPELKDFLMQCFQKDPNLRPTAKQLLKHPWI  254 (254)
T ss_pred             ------------------------ccCCCCCCCCCCHHHHHHHHHHHhCChhhCcCHHHHhcCCCC
Confidence                                    001112344557789999999999999999999999999997

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-36  Score=279.15  Aligned_cols=254  Identities=24%  Similarity=0.355  Sum_probs=204.9

Q ss_pred             eEEEEeecccCceEEEEEEeCCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           38 YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        38 y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      .+.++.||+|+-|+||+++...++...|||.....  +.....+...+.++.+-.     +.|+||+.+++|...    .
T Consensus        94 l~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~-----dcpyIV~c~GyFi~n----~  164 (391)
T KOG0983|consen   94 LENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSH-----DCPYIVQCFGYFITN----T  164 (391)
T ss_pred             hhhHHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhcc-----CCCeeeeeeeEEeeC----c
Confidence            45778899999999999999999999999976543  344556666777666553     689999999999964    6


Q ss_pred             eEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCC
Q 013220          116 HLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI  195 (447)
Q Consensus       116 ~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~  195 (447)
                      .+++.||.|+.++..++.+-. .+++|.-+-.+..-++.||.||-.+.||+|||+||.|||+                  
T Consensus       165 dV~IcMelMs~C~ekLlkrik-~piPE~ilGk~tva~v~AL~YLKeKH~viHRDvKPSNILl------------------  225 (391)
T KOG0983|consen  165 DVFICMELMSTCAEKLLKRIK-GPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILL------------------  225 (391)
T ss_pred             hHHHHHHHHHHHHHHHHHHhc-CCchHHhhhhhHHHHHHHHHHHHHhcceeecccCccceEE------------------
Confidence            789999999888888776543 6799999999999999999999998899999999999999                  


Q ss_pred             cCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--cccC
Q 013220          196 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FAEE  273 (447)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--~~~~  273 (447)
                                                                            +..+++||||||++-...++  .++.
T Consensus       226 ------------------------------------------------------De~GniKlCDFGIsGrlvdSkAhtrs  251 (391)
T KOG0983|consen  226 ------------------------------------------------------DERGNIKLCDFGISGRLVDSKAHTRS  251 (391)
T ss_pred             ------------------------------------------------------ccCCCEEeecccccceeecccccccc
Confidence                                                                  66789999999999765543  4556


Q ss_pred             CCCCCccChHHhhc---CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          274 IQTRQYRAPEVILR---AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       274 ~gt~~y~aPE~l~~---~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      .|.+.|||||.+.-   ..|+..+|+||||+++++|.||++||.+-+     .+-..+..+.   ...|..+        
T Consensus       252 AGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~-----tdFe~ltkvl---n~ePP~L--------  315 (391)
T KOG0983|consen  252 AGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCK-----TDFEVLTKVL---NEEPPLL--------  315 (391)
T ss_pred             cCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCC-----ccHHHHHHHH---hcCCCCC--------
Confidence            89999999999963   358899999999999999999999998653     2333333333   2333211        


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccc
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~  417 (447)
                                                  +.....++.|.+|+..||+.|+.+||.-.++|+|||+..
T Consensus       316 ----------------------------~~~~gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll~h~Fi~~  354 (391)
T KOG0983|consen  316 ----------------------------PGHMGFSPDFQSFVKDCLTKDHRKRPKYNKLLEHPFIKR  354 (391)
T ss_pred             ----------------------------CcccCcCHHHHHHHHHHhhcCcccCcchHHHhcCcceee
Confidence                                        011124778999999999999999999999999997664

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=2.6e-35  Score=282.28  Aligned_cols=245  Identities=22%  Similarity=0.347  Sum_probs=192.3

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      ++|++.+.||+|+||+||+|++.. +..+|+|.++........+.+|+++++.+      +|+||+++++++...    .
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~-~~~~aik~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~~----~   72 (256)
T cd05113           4 KDLTFLKELGTGQFGVVKYGKWRG-QYDVAIKMIKEGSMSEDEFIEEAKVMMKL------SHEKLVQLYGVCTKQ----R   72 (256)
T ss_pred             HHeEEeeEecCcccceEEEEEecC-CCcEEEEEcCCCcccHHHHHHHHHHHhcC------CCCCeeeEEEEEccC----C
Confidence            579999999999999999997653 45699998876555456788999999998      789999999988643    5


Q ss_pred             eEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          116 HLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       116 ~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      ..+++|||+ +++|.+++.... ..+++..+..++.|++.||+|||++ |++|+||||+||++                 
T Consensus        73 ~~~lv~e~~~~~~l~~~i~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dl~p~nili-----------------  133 (256)
T cd05113          73 PIYIVTEYMSNGCLLNYLREHG-KRFQPSQLLEMCKDVCEGMAYLESK-QFIHRDLAARNCLV-----------------  133 (256)
T ss_pred             CcEEEEEcCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhC-CeeccccCcceEEE-----------------
Confidence            789999999 788988876533 3589999999999999999999996 99999999999999                 


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc-cc-
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF-AE-  272 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~-~~-  272 (447)
                                                                             +.+..++|+|||.+....... .. 
T Consensus       134 -------------------------------------------------------~~~~~~kl~d~g~~~~~~~~~~~~~  158 (256)
T cd05113         134 -------------------------------------------------------DDQGCVKVSDFGLSRYVLDDEYTSS  158 (256)
T ss_pred             -------------------------------------------------------cCCCCEEECCCccceecCCCceeec
Confidence                                                                   335679999999886443221 11 


Q ss_pred             --CCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          273 --EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       273 --~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                        ..++..|+|||.+.+..++.++|+|||||++|+|++ |..||....      .......+.+  +.            
T Consensus       159 ~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~------~~~~~~~~~~--~~------------  218 (256)
T cd05113         159 VGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFN------NSETVEKVSQ--GL------------  218 (256)
T ss_pred             CCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCC------HHHHHHHHhc--CC------------
Confidence              224567999999988889999999999999999998 999986442      1111111110  00            


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                 ....+...+..+.+++.+||+.||++|||+.+++++
T Consensus       219 ---------------------------~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~ll~~  254 (256)
T cd05113         219 ---------------------------RLYRPHLASEKVYAIMYSCWHEKAEERPTFQQLLSS  254 (256)
T ss_pred             ---------------------------CCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHh
Confidence                                       000122235688999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=4.2e-35  Score=284.01  Aligned_cols=249  Identities=20%  Similarity=0.299  Sum_probs=192.4

Q ss_pred             ccccCCceEEEEeecccCceEEEEEEeCCCCe----EEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeec
Q 013220           31 DLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSS----YVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLI  104 (447)
Q Consensus        31 ~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~----~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~  104 (447)
                      ++++..+|++.++||+|+||+||+|++..++.    .||+|+.+..  ......+.+|+.+++.+      +|+||++++
T Consensus         2 ~~l~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i~~~~   75 (279)
T cd05109           2 RILKETELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGV------GSPYVCRLL   75 (279)
T ss_pred             cccchhheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhc------CCCCCceEE
Confidence            45667899999999999999999998766655    4899987643  33455778888888888      788999999


Q ss_pred             ccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCC
Q 013220          105 DHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP  183 (447)
Q Consensus       105 ~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~  183 (447)
                      +.+..     ...+++|||+ +++|.+++.... ..+++..+..++.|++.||+|||++ ||+||||||+||++.     
T Consensus        76 ~~~~~-----~~~~l~~~~~~~g~l~~~l~~~~-~~~~~~~~~~~~~qi~~~L~~lH~~-~iiH~dlkp~Nil~~-----  143 (279)
T cd05109          76 GICLT-----STVQLVTQLMPYGCLLDYVRENK-DRIGSQDLLNWCVQIAKGMSYLEEV-RLVHRDLAARNVLVK-----  143 (279)
T ss_pred             EEEcC-----CCcEEEEEcCCCCCHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHHC-CeeccccccceEEEc-----
Confidence            88764     3577999999 889988876432 3588999999999999999999996 999999999999993     


Q ss_pred             CCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcc
Q 013220          184 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  263 (447)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a  263 (447)
                                                                                         ....++|+|||++
T Consensus       144 -------------------------------------------------------------------~~~~~kL~dfG~~  156 (279)
T cd05109         144 -------------------------------------------------------------------SPNHVKITDFGLA  156 (279)
T ss_pred             -------------------------------------------------------------------CCCcEEECCCCce
Confidence                                                                               3456999999998


Q ss_pred             cccccccc-----cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCC
Q 013220          264 CRANKQFA-----EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGK  337 (447)
Q Consensus       264 ~~~~~~~~-----~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~  337 (447)
                      ........     ...++..|+|||.+.+..++.++|||||||++|+|++ |..||....       ...+........ 
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~-------~~~~~~~~~~~~-  228 (279)
T cd05109         157 RLLDIDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIP-------AREIPDLLEKGE-  228 (279)
T ss_pred             eecccccceeecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCC-------HHHHHHHHHCCC-
Confidence            75543221     1234568999999988889999999999999999998 889986432       111111111000 


Q ss_pred             CCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          338 MPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                             ....+...+..+.+++.+||+.||++|||+.+++.
T Consensus       229 ---------------------------------------~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~l~~  263 (279)
T cd05109         229 ---------------------------------------RLPQPPICTIDVYMIMVKCWMIDSECRPRFRELVD  263 (279)
T ss_pred             ---------------------------------------cCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                                                   00112234567889999999999999999999984

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.7e-35  Score=280.32  Aligned_cols=246  Identities=25%  Similarity=0.407  Sum_probs=196.0

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      .++|++.++||+|+||+||+|.+. .+..||+|.+.........+.+|+++++.+      +|++|+++++++..    .
T Consensus         5 ~~~~~i~~~ig~g~~~~v~~~~~~-~~~~~~vK~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~----~   73 (261)
T cd05034           5 RESLKLERKLGAGQFGEVWMGTWN-GTTKVAVKTLKPGTMSPEAFLQEAQIMKKL------RHDKLVQLYAVCSE----E   73 (261)
T ss_pred             hhheeeeeeeccCcceEEEEEEEc-CCceEEEEEecCCccCHHHHHHHHHHHhhC------CCCCEeeeeeeeec----C
Confidence            478999999999999999999875 457899999887665567889999999998      78999999998764    3


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ...++||||+ +++|.+.+.......+++..+..++.|++.||.|||++ |++|+||||+||++                
T Consensus        74 ~~~~~v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~-~i~h~di~p~nili----------------  136 (261)
T cd05034          74 EPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESR-NYIHRDLAARNILV----------------  136 (261)
T ss_pred             CceEEEEeccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCcchheEEE----------------
Confidence            5799999999 78999888654444689999999999999999999997 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc---
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF---  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~---  270 (447)
                                                                              +.+..++|+|||.+.......   
T Consensus       137 --------------------------------------------------------~~~~~~~l~d~g~~~~~~~~~~~~  160 (261)
T cd05034         137 --------------------------------------------------------GENLVCKIADFGLARLIEDDEYTA  160 (261)
T ss_pred             --------------------------------------------------------cCCCCEEECccccceeccchhhhh
Confidence                                                                    335679999999986544211   


Q ss_pred             -ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          271 -AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       271 -~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                       .....+..|+|||.+.+..++.++|+|||||++|++++ |+.||.+.+      ....+..+..   ..          
T Consensus       161 ~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~------~~~~~~~~~~---~~----------  221 (261)
T cd05034         161 REGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMT------NREVLEQVER---GY----------  221 (261)
T ss_pred             hhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHc---CC----------
Confidence             11224568999999998889999999999999999998 999996542      1112221111   00          


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                  ....+...+.++.+++.+||+.+|++||+++++++
T Consensus       222 ----------------------------~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~  256 (261)
T cd05034         222 ----------------------------RMPRPPNCPEELYDLMLQCWDKDPEERPTFEYLQS  256 (261)
T ss_pred             ----------------------------CCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHH
Confidence                                        00122233568899999999999999999999874

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=100.00  E-value=6.1e-35  Score=284.37  Aligned_cols=252  Identities=27%  Similarity=0.452  Sum_probs=199.2

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      +|.-.+.||.|++|.||+|.+..++..+++|.+.... ...+.+.+|+.+++.+      +|+||+++++.+..    ++
T Consensus        20 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~------~h~~vv~~~~~~~~----~~   89 (285)
T cd06648          20 YLDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDY------QHPNIVEMYSSYLV----GD   89 (285)
T ss_pred             hhhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHc------CCCChheEEEEEEc----CC
Confidence            4666679999999999999998899999999875433 2345678899999998      78999999998874    36


Q ss_pred             eEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          116 HLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       116 ~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      +.+++|||+ +++|.+.+..   ..+++..+..++.|++.||+|||++ ||+||||+|+||++                 
T Consensus        90 ~~~~v~e~~~~~~L~~~~~~---~~~~~~~~~~~~~ql~~~l~~lH~~-~i~H~dl~p~Nil~-----------------  148 (285)
T cd06648          90 ELWVVMEFLEGGALTDIVTH---TRMNEEQIATVCLAVLKALSFLHAQ-GVIHRDIKSDSILL-----------------  148 (285)
T ss_pred             eEEEEEeccCCCCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCChhhEEE-----------------
Confidence            899999999 8899888765   3488899999999999999999996 99999999999999                 


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---cc
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FA  271 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~~  271 (447)
                                                                             +.+..++|+|||.+......   ..
T Consensus       149 -------------------------------------------------------~~~~~~~l~d~g~~~~~~~~~~~~~  173 (285)
T cd06648         149 -------------------------------------------------------TSDGRVKLSDFGFCAQVSKEVPRRK  173 (285)
T ss_pred             -------------------------------------------------------cCCCcEEEcccccchhhccCCcccc
Confidence                                                                   33567999999987543322   12


Q ss_pred             cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccc
Q 013220          272 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  351 (447)
Q Consensus       272 ~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  351 (447)
                      ...++..|+|||.+.+..++.++|+|||||++|+|++|..||...+      ....+.   .+....+..          
T Consensus       174 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~------~~~~~~---~~~~~~~~~----------  234 (285)
T cd06648         174 SLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEP------PLQAMK---RIRDNLPPK----------  234 (285)
T ss_pred             cccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCC------HHHHHH---HHHhcCCCC----------
Confidence            2468899999999988889999999999999999999999996542      111111   111000000          


Q ss_pred             hhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          352 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                ...+...+..+.+|+.+||+.+|++|||+.++++||||+...
T Consensus       235 --------------------------~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~~~  276 (285)
T cd06648         235 --------------------------LKNLHKVSPRLRSFLDRMLVRDPAQRATAAELLNHPFLAKAG  276 (285)
T ss_pred             --------------------------CcccccCCHHHHHHHHHHcccChhhCcCHHHHccCcccccCC
Confidence                                      001122456899999999999999999999999999998654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=6e-35  Score=280.00  Aligned_cols=247  Identities=24%  Similarity=0.377  Sum_probs=194.8

Q ss_pred             cCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           34 NGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        34 ~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      ..++|++.+.||.|++|.||+|.+. ++..||+|.++......+.+.+|+++++.+      .|+||+++++.+..    
T Consensus         4 ~~~~~~~~~~lg~g~~~~v~~~~~~-~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~----   72 (261)
T cd05068           4 DRTSIQLLRKLGAGQFGEVWEGLWN-NTTPVAVKTLKPGTMDPKDFLAEAQIMKKL------RHPKLIQLYAVCTL----   72 (261)
T ss_pred             chhheeeEEEecccCCccEEEEEec-CCeEEEEEeeCCCcccHHHHHHHHHHHHHC------CCCCccceeEEEec----
Confidence            3478999999999999999999865 456899998876555566788999999999      78899999998764    


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      ....+++|||+ +++|.+.+.......+++..+..++.|++.||.+||++ ||+|+||||+||++               
T Consensus        73 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dl~p~Nil~---------------  136 (261)
T cd05068          73 EEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQ-NYIHRDLAARNVLV---------------  136 (261)
T ss_pred             CCCeeeeeecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhC-CeeeccCCcceEEE---------------
Confidence            36789999999 88999888654434588999999999999999999996 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc-c
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF-A  271 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~-~  271 (447)
                                                                               +....++|+|||++....... .
T Consensus       137 ---------------------------------------------------------~~~~~~~l~dfg~~~~~~~~~~~  159 (261)
T cd05068         137 ---------------------------------------------------------GENNICKVADFGLARVIKEDIYE  159 (261)
T ss_pred             ---------------------------------------------------------cCCCCEEECCcceEEEccCCccc
Confidence                                                                     335679999999987654321 1


Q ss_pred             cCCC---CCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          272 EEIQ---TRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       272 ~~~g---t~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                      ...+   +..|+|||.+.+..++.++|+|||||++|+|++ |..||.+..      .......+.   ...         
T Consensus       160 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~------~~~~~~~~~---~~~---------  221 (261)
T cd05068         160 AREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMT------NAEVLQQVD---QGY---------  221 (261)
T ss_pred             ccCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC------HHHHHHHHH---cCC---------
Confidence            1222   357999999988889999999999999999998 999996542      111111111   000         


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                   ....+...+..+.+++.+||+.+|++||++++++.
T Consensus       222 -----------------------------~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~l~~  256 (261)
T cd05068         222 -----------------------------RMPCPPGCPKELYDIMLDCWKEDPDDRPTFETLQW  256 (261)
T ss_pred             -----------------------------CCCCCCcCCHHHHHHHHHHhhcCcccCCCHHHHHH
Confidence                                         00122334668999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=100.00  E-value=4.1e-35  Score=285.14  Aligned_cols=255  Identities=30%  Similarity=0.463  Sum_probs=204.6

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      ..|.+.+.||+|++|.||+|.+..++..|++|++.........+.+|+++++.+      +|+||+++++.+...    .
T Consensus        19 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~~----~   88 (286)
T cd06614          19 ELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDC------KHPNIVDYYDSYLVG----D   88 (286)
T ss_pred             ccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCchhHHHHHHHHHHHHHC------CCCCeeEEEEEEEEC----C
Confidence            569999999999999999999988899999998876554456788999999998      789999999998754    6


Q ss_pred             eEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          116 HLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       116 ~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      ..+++|||+ +++|.+++.... ..++...+..++.|++.||+|||+. ||+|+|++|+||++                 
T Consensus        89 ~~~lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~lH~~-gi~H~dl~p~ni~i-----------------  149 (286)
T cd06614          89 ELWVVMEYMDGGSLTDIITQNF-VRMNEPQIAYVCREVLQGLEYLHSQ-NVIHRDIKSDNILL-----------------  149 (286)
T ss_pred             EEEEEEeccCCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHhC-CeeeCCCChhhEEE-----------------
Confidence            899999999 689999887543 3589999999999999999999996 99999999999999                 


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---cc
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FA  271 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~~  271 (447)
                                                                             +....++|+|||.+......   ..
T Consensus       150 -------------------------------------------------------~~~~~~~l~d~~~~~~~~~~~~~~~  174 (286)
T cd06614         150 -------------------------------------------------------SKDGSVKLADFGFAAQLTKEKSKRN  174 (286)
T ss_pred             -------------------------------------------------------cCCCCEEECccchhhhhccchhhhc
Confidence                                                                   33567999999988654332   12


Q ss_pred             cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccc
Q 013220          272 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  351 (447)
Q Consensus       272 ~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  351 (447)
                      ...++..|+|||.+.+..++.++|+|||||++|+|++|..||...+      ..   ..........+.           
T Consensus       175 ~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~------~~---~~~~~~~~~~~~-----------  234 (286)
T cd06614         175 SVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREP------PL---RALFLITTKGIP-----------  234 (286)
T ss_pred             cccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCC------HH---HHHHHHHhcCCC-----------
Confidence            2357789999999988888999999999999999999999986432      11   111111000000           


Q ss_pred             hhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          352 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                               ....+...+..+.+||.+||+.+|.+|||+.++|+||||+...
T Consensus       235 -------------------------~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~~~  277 (286)
T cd06614         235 -------------------------PLKNPEKWSPEFKDFLNKCLVKDPEKRPSAEELLQHPFLKKAC  277 (286)
T ss_pred             -------------------------CCcchhhCCHHHHHHHHHHhccChhhCcCHHHHhhChHhhccC
Confidence                                     0001122456889999999999999999999999999999743

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=5.3e-35  Score=278.72  Aligned_cols=239  Identities=21%  Similarity=0.358  Sum_probs=185.8

Q ss_pred             EeecccCceEEEEEEeCCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEE
Q 013220           42 RKLGWGQFSIVWLAYDTRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCM  119 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~l  119 (447)
                      ++||+|+||.||+|++..+++.||+|.....  ......+.+|+++++.+      +|+||+++++++...    ...++
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~~----~~~~l   70 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQY------SHPNIVRLIGVCTQK----QPIYI   70 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhC------CCCCcceEEEEEcCC----CCeEE
Confidence            4689999999999999989999999976533  33456788999999998      789999999988753    67999


Q ss_pred             EEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCC
Q 013220          120 VLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER  198 (447)
Q Consensus       120 vmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~  198 (447)
                      ||||+ +++|.+.+... ...+++..+..++.|++.||+|||++ ||+|+||||+||++.                    
T Consensus        71 v~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~qi~~~L~~lH~~-~i~H~dl~p~nil~~--------------------  128 (252)
T cd05084          71 VMELVQGGDFLTFLRTE-GPRLKVKELIQMVENAAAGMEYLESK-HCIHRDLAARNCLVT--------------------  128 (252)
T ss_pred             EEeeccCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhC-CccccccchheEEEc--------------------
Confidence            99999 88898887542 23478999999999999999999996 999999999999993                    


Q ss_pred             CCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccccc-----C
Q 013220          199 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAE-----E  273 (447)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~~-----~  273 (447)
                                                                          ....++|+|||.+.........     .
T Consensus       129 ----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~  156 (252)
T cd05084         129 ----------------------------------------------------EKNVLKISDFGMSREEEDGVYASTGGMK  156 (252)
T ss_pred             ----------------------------------------------------CCCcEEECccccCcccccccccccCCCC
Confidence                                                                3556999999998654322111     1


Q ss_pred             CCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccch
Q 013220          274 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  352 (447)
Q Consensus       274 ~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  352 (447)
                      ..+..|+|||.+.+..++.++|+|||||++|+|++ |..||...+      .......+..   .               
T Consensus       157 ~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~------~~~~~~~~~~---~---------------  212 (252)
T cd05084         157 QIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLS------NQQTREAIEQ---G---------------  212 (252)
T ss_pred             CCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccC------HHHHHHHHHc---C---------------
Confidence            22456999999988889999999999999999997 888885432      1111110000   0               


Q ss_pred             hcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          353 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                             .....+...+..+.+|+.+||+.+|++|||+.++++
T Consensus       213 -----------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~  248 (252)
T cd05084         213 -----------------------VRLPCPELCPDAVYRLMERCWEYDPGQRPSFSTVHQ  248 (252)
T ss_pred             -----------------------CCCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                                   001122334668899999999999999999999974

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=8.4e-35  Score=281.02  Aligned_cols=247  Identities=22%  Similarity=0.360  Sum_probs=192.7

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCC-----CeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRT-----SSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~-----~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      .++|++.+.||+|+||.||+|.+...     +..||+|.+....  .....+.+|+++++.+      +|+||+++++++
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i~~~~~~~   78 (277)
T cd05032           5 REKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEF------NCHHVVRLLGVV   78 (277)
T ss_pred             hHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhC------CCCceeEEEEEE
Confidence            36899999999999999999987643     4889999876443  2344677899999888      789999999998


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhc--------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEee
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSR--------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV  178 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~--------~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~  178 (447)
                      ...    ...++||||+ +++|.+.+....        ...+++..+..++.|++.||.|||++ +|+|+||||+||++ 
T Consensus        79 ~~~----~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~di~p~nill-  152 (277)
T cd05032          79 STG----QPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAK-KFVHRDLAARNCMV-  152 (277)
T ss_pred             cCC----CCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhC-CccccccChheEEE-
Confidence            753    6899999999 789998885422        12367788999999999999999996 99999999999999 


Q ss_pred             ecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEe
Q 013220          179 STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVV  258 (447)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~  258 (447)
                                                                                             +....++|+
T Consensus       153 -----------------------------------------------------------------------~~~~~~kl~  161 (277)
T cd05032         153 -----------------------------------------------------------------------AEDLTVKIG  161 (277)
T ss_pred             -----------------------------------------------------------------------cCCCCEEEC
Confidence                                                                                   335679999


Q ss_pred             ecCcccccccc-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHH
Q 013220          259 DFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMM  332 (447)
Q Consensus       259 Dfg~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~  332 (447)
                      |||.+......     .....++..|+|||.+.+..++.++|||||||++|++++ |..||...+      . .......
T Consensus       162 dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~------~-~~~~~~~  234 (277)
T cd05032         162 DFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLS------N-EEVLKFV  234 (277)
T ss_pred             CcccchhhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCC------H-HHHHHHH
Confidence            99998654322     123356788999999988889999999999999999998 999986542      1 1111111


Q ss_pred             HHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          333 ELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       333 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                      . .+                                       .....+...+..+.++|.+||+.+|++|||+.++++
T Consensus       235 ~-~~---------------------------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~  273 (277)
T cd05032         235 I-DG---------------------------------------GHLDLPENCPDKLLELMRMCWQYNPKMRPTFLEIVS  273 (277)
T ss_pred             h-cC---------------------------------------CCCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence            0 00                                       001123344678999999999999999999999985

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=7.5e-35  Score=286.32  Aligned_cols=249  Identities=23%  Similarity=0.354  Sum_probs=193.4

Q ss_pred             CCceEEEEeecccCceEEEEEEe-----CCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYD-----TRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~-----~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      .++|.+.+.||+|+||.||+|.+     ..++..||+|+++..  ....+.+.+|+++++.+.     +|+||+++++.+
T Consensus        34 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~~iv~~~~~~  108 (302)
T cd05055          34 RNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLG-----NHENIVNLLGAC  108 (302)
T ss_pred             HHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhcc-----CCCCcceEEEEE
Confidence            36899999999999999999975     234668999987653  233457889999999984     689999999988


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCC
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKD  186 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~  186 (447)
                      ...    ...+++|||+ +++|.+++.......+++..+..++.|++.||+|||++ +|+|+||||+||++.        
T Consensus       109 ~~~----~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~-~ivH~dlkp~Nil~~--------  175 (302)
T cd05055         109 TIG----GPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASK-NCIHRDLAARNVLLT--------  175 (302)
T ss_pred             ecC----CceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CeehhhhccceEEEc--------
Confidence            754    5799999999 78999888654434489999999999999999999996 999999999999993        


Q ss_pred             cccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccc
Q 013220          187 PIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA  266 (447)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~  266 (447)
                                                                                      ....++|+|||.+...
T Consensus       176 ----------------------------------------------------------------~~~~~~l~dfg~~~~~  191 (302)
T cd05055         176 ----------------------------------------------------------------HGKIVKICDFGLARDI  191 (302)
T ss_pred             ----------------------------------------------------------------CCCeEEECCCcccccc
Confidence                                                                            3456899999998644


Q ss_pred             cccc-----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCH
Q 013220          267 NKQF-----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  340 (447)
Q Consensus       267 ~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~  340 (447)
                      ....     ....++..|+|||.+.+..++.++|||||||++|+|++ |..||.....      ....   .+.+...  
T Consensus       192 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~------~~~~---~~~~~~~--  260 (302)
T cd05055         192 MNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPV------DSKF---YKLIKEG--  260 (302)
T ss_pred             cCCCceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCc------hHHH---HHHHHcC--
Confidence            3221     12235678999999998889999999999999999998 9999865421      1110   0100000  


Q ss_pred             HhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          341 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                         .....+...+..+.+|+.+||+.+|++|||+.|+++
T Consensus       261 -----------------------------------~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ell~  296 (302)
T cd05055         261 -----------------------------------YRMAQPEHAPAEIYDIMKTCWDADPLKRPTFKQIVQ  296 (302)
T ss_pred             -----------------------------------CcCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHH
Confidence                                               000112234568999999999999999999999985

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=7.5e-35  Score=282.85  Aligned_cols=258  Identities=25%  Similarity=0.330  Sum_probs=192.5

Q ss_pred             Cce-EEEEeecccCceEEEEEE----eCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           36 GRY-IAQRKLGWGQFSIVWLAY----DTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        36 ~~y-~l~~~lG~G~~g~Vy~a~----~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      +|| ++.+.||+|+||+||++.    ...++..||+|+++...  .....+.+|+++++.+      .|+||+++++++.
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~   76 (283)
T cd05080           3 KRYLKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTL------YHENIVKYKGCCS   76 (283)
T ss_pred             hhhceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhC------CCCCEeeEEEEEe
Confidence            355 999999999999998874    33567899999887542  2355778899999999      7899999999876


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCc
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                      ..  .....+++|||+ +++|.+.+...   .+++..+..++.|++.||+|||++ ||+|+||||+||++          
T Consensus        77 ~~--~~~~~~lv~e~~~~~~l~~~~~~~---~l~~~~~~~i~~~l~~~l~~lH~~-~i~H~dlkp~Nili----------  140 (283)
T cd05080          77 EQ--GGKGLQLIMEYVPLGSLRDYLPKH---KLNLAQLLLFAQQICEGMAYLHSQ-HYIHRDLAARNVLL----------  140 (283)
T ss_pred             cC--CCceEEEEecCCCCCCHHHHHHHc---CCCHHHHHHHHHHHHHHHHHHHHC-CeeccccChheEEE----------
Confidence            43  345789999999 88898887543   489999999999999999999997 99999999999999          


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                    +....++|+|||++....
T Consensus       141 --------------------------------------------------------------~~~~~~~l~dfg~~~~~~  158 (283)
T cd05080         141 --------------------------------------------------------------DNDRLVKIGDFGLAKAVP  158 (283)
T ss_pred             --------------------------------------------------------------cCCCcEEEeecccccccC
Confidence                                                                          335679999999987554


Q ss_pred             ccc------ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          268 KQF------AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       268 ~~~------~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                      ...      ....++..|+|||.+.+..++.++|||||||++|+|++|..||......        .   ..........
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~--------~---~~~~~~~~~~  227 (283)
T cd05080         159 EGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKK--------F---EEMIGPKQGQ  227 (283)
T ss_pred             CcchhhccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcch--------h---hhhhcccccc
Confidence            321      1123567799999998888899999999999999999999998654211        0   0000000000


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhh--hhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLV--DKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                      .                       ....+.....  .....+...+..+.+++.+||+.||++|||++++++
T Consensus       228 ~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~  276 (283)
T cd05080         228 M-----------------------TVVRLIELLERGMRLPCPKNCPQEVYILMKNCWETEAKFRPTFRSLIP  276 (283)
T ss_pred             c-----------------------chhhhhhhhhcCCCCCCCCCCCHHHHHHHHHHhccChhhCCCHHHHHH
Confidence            0                       0000000000  011233445678999999999999999999999985

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=100.00  E-value=6.1e-35  Score=279.60  Aligned_cols=248  Identities=27%  Similarity=0.469  Sum_probs=193.8

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh------HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA------AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~------~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      ||.+.++||+|+||+||++.+..++..+++|+.+..      ......+..|+.+++.+      +|+||+++++.+...
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~~   74 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKL------DHPAIVKFHASFLER   74 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhC------CCCcHHHHHHHHhcC
Confidence            699999999999999999998887777777765531      12233566788888888      789999999988753


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~--~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                          ...++||||+ +++|.+.+...  ....+++..+..++.|++.||+|||+. |++|+|++|+||++..        
T Consensus        75 ----~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~-~i~h~~l~~~nili~~--------  141 (260)
T cd08222          75 ----DAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQR-RILHRDLKAKNIFLKN--------  141 (260)
T ss_pred             ----CceEEEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHc-CccccCCChhheEeec--------
Confidence                5799999999 78888777532  224589999999999999999999996 9999999999999932        


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                       ..++|+|||.+....
T Consensus       142 -----------------------------------------------------------------~~~~l~d~g~~~~~~  156 (260)
T cd08222         142 -----------------------------------------------------------------NLLKIGDFGVSRLLM  156 (260)
T ss_pred             -----------------------------------------------------------------CCEeecccCceeecC
Confidence                                                                             248999999886543


Q ss_pred             cc---cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhh
Q 013220          268 KQ---FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  344 (447)
Q Consensus       268 ~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (447)
                      ..   .....++..|+|||.+.+..++.++|+||||+++|+|++|..||....         ...........       
T Consensus       157 ~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~-------  220 (260)
T cd08222         157 GSCDLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQN---------FLSVVLRIVEG-------  220 (260)
T ss_pred             CCcccccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCcc---------HHHHHHHHHcC-------
Confidence            21   223457889999999988788899999999999999999999995431         11111111110       


Q ss_pred             CCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          345 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                                                     ..+..+...+.++.++|.+||+.||++||++.++++||||
T Consensus       221 -------------------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~  260 (260)
T cd08222         221 -------------------------------PTPSLPETYSRQLNSIMQSMLNKDPSLRPSAAEILRNPFI  260 (260)
T ss_pred             -------------------------------CCCCCcchhcHHHHHHHHHHhcCChhhCcCHHHHhhCCCC
Confidence                                           0111234456788999999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=1.8e-34  Score=276.84  Aligned_cols=248  Identities=27%  Similarity=0.414  Sum_probs=195.5

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh----HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA----AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~----~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|++.+.||.|+||.||+|.+..+++.||+|.++..    ......+.+|+++++.+      +|++|+++++.+... 
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~------~~~~i~~~~~~~~~~-   74 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQL------DHPNVIKYLASFIEN-   74 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhC------CCCCeeeeeeeeecC-
Confidence            5799999999999999999999989999999977532    22355788999999999      788999999998753 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSR--YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~--~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                         +..++||||+ +++|.+++....  ...+++..+..++.|++.||+|||+. ||+|+||+|+||++           
T Consensus        75 ---~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~-~i~h~dl~p~nil~-----------  139 (267)
T cd08224          75 ---NELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSK-RIMHRDIKPANVFI-----------  139 (267)
T ss_pred             ---CeEEEEEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhC-CEecCCcChhhEEE-----------
Confidence               6899999999 789988875422  23478899999999999999999996 99999999999999           


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                   +....++|+|||.+.....
T Consensus       140 -------------------------------------------------------------~~~~~~~l~d~~~~~~~~~  158 (267)
T cd08224         140 -------------------------------------------------------------TATGVVKLGDLGLGRFFSS  158 (267)
T ss_pred             -------------------------------------------------------------CCCCcEEEeccceeeeccC
Confidence                                                                         3356799999999865432


Q ss_pred             c---cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          269 Q---FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       269 ~---~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                      .   .....++..|+|||.+.+..++.++|+|||||++|+|++|..||.....     +   .....+.+...       
T Consensus       159 ~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-----~---~~~~~~~~~~~-------  223 (267)
T cd08224         159 KTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKM-----N---LYSLCKKIEKC-------  223 (267)
T ss_pred             CCcccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCCc-----c---HHHHHhhhhcC-------
Confidence            2   2234678899999999888899999999999999999999999965421     0   00011000000       


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCCh-hhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSE-TDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                    .....+. ..+..+.++|.+||..+|++|||+.++++
T Consensus       224 ------------------------------~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~  260 (267)
T cd08224         224 ------------------------------DYPPLPADHYSEELRDLVSRCINPDPEKRPDISYVLQ  260 (267)
T ss_pred             ------------------------------CCCCCChhhcCHHHHHHHHHHcCCCcccCCCHHHHHH
Confidence                                          0000111 34568889999999999999999999874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=4.9e-37  Score=329.83  Aligned_cols=257  Identities=30%  Similarity=0.412  Sum_probs=211.6

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEech---hHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKS---AAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~---~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      -|++-...||.|.||.||.|.+..+|+..|+|-++.   +......+.+|+.++..+      +|||+|+++++=.+.  
T Consensus      1235 ~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~l------nHpNlV~YyGVEvHR-- 1306 (1509)
T KOG4645|consen 1235 FRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGL------NHPNLVRYYGVEVHR-- 1306 (1509)
T ss_pred             eeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhc------cCccccccCceeecH--
Confidence            457777889999999999999999999999995543   334456788999999999      899999999987754  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                        +.++|.|||| +|+|.+++.+++-  .++-..+.+..|++.|++|||++ |||||||||.||++              
T Consensus      1307 --ekv~IFMEyC~~GsLa~ll~~gri--~dE~vt~vyt~qll~gla~LH~~-gIVHRDIK~aNI~L-------------- 1367 (1509)
T KOG4645|consen 1307 --EKVYIFMEYCEGGSLASLLEHGRI--EDEMVTRVYTKQLLEGLAYLHEH-GIVHRDIKPANILL-------------- 1367 (1509)
T ss_pred             --HHHHHHHHHhccCcHHHHHHhcch--hhhhHHHHHHHHHHHHHHHHHhc-CceecCCCccceee--------------
Confidence              6899999999 9999999987643  67778899999999999999997 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                +..+.+|++|||.|..+..+  
T Consensus      1368 ----------------------------------------------------------d~~g~iK~~DFGsa~ki~~~~~ 1389 (1509)
T KOG4645|consen 1368 ----------------------------------------------------------DFNGLIKYGDFGSAVKIKNNAQ 1389 (1509)
T ss_pred             ----------------------------------------------------------ecCCcEEeecccceeEecCchh
Confidence                                                                      44678999999999765432  


Q ss_pred             -----cccCCCCCCccChHHhhcC---CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          270 -----FAEEIQTRQYRAPEVILRA---GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       270 -----~~~~~gt~~y~aPE~l~~~---~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                           .....||+.|||||++.+.   .-..++||||||||+.+|+||+-||...+      ++.++...+..       
T Consensus      1390 ~~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~d------ne~aIMy~V~~------- 1456 (1509)
T KOG4645|consen 1390 TMPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELD------NEWAIMYHVAA------- 1456 (1509)
T ss_pred             cCCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhcc------chhHHHhHHhc-------
Confidence                 2345799999999999864   35689999999999999999999998654      22222222221       


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                                                       ...+.+|..++.+.+|||.+||+.||++|+++.|+|+|-|-+...++
T Consensus      1457 ---------------------------------gh~Pq~P~~ls~~g~dFle~Cl~~dP~~Rw~~~qlle~~f~~~~~d~ 1503 (1509)
T KOG4645|consen 1457 ---------------------------------GHKPQIPERLSSEGRDFLEHCLEQDPKMRWTASQLLEHAFGKSCTDE 1503 (1509)
T ss_pred             ---------------------------------cCCCCCchhhhHhHHHHHHHHHhcCchhhhHHHHHHHhhcccccccc
Confidence                                             12234677789999999999999999999999999999999876554


Q ss_pred             cc
Q 013220          422 RD  423 (447)
Q Consensus       422 ~~  423 (447)
                      -+
T Consensus      1504 ~s 1505 (1509)
T KOG4645|consen 1504 DS 1505 (1509)
T ss_pred             ch
Confidence            43

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=1.4e-35  Score=284.07  Aligned_cols=245  Identities=25%  Similarity=0.408  Sum_probs=196.0

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH-hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ-FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~-~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      .+|++.++||.|+||.||+|.+.. +..+|+|++..... ....+.+|+++++.+      +|+||+++++.+..    .
T Consensus         6 ~~y~~~~~ig~g~~~~vy~~~~~~-~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~----~   74 (261)
T cd05148           6 EEFTLERKLGSGYFGEVWEGLWKN-RVRVAIKILKSDDLLKQQDFQKEVQALKRL------RHKHLISLFAVCSV----G   74 (261)
T ss_pred             HHHHHhhhhccCCCccEEEeEecC-CCcEEEEeccccchhhHHHHHHHHHHHhcC------CCcchhheeeeEec----C
Confidence            469999999999999999999877 88999998776543 456788899999998      78999999998764    3


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ...++||||+ +++|.+++.......++...+..++.|++.||+|||++ ||+|+||||+||+++               
T Consensus        75 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~-~i~h~dl~~~nilv~---------------  138 (261)
T cd05148          75 EPVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQ-NSIHRDLAARNILVG---------------  138 (261)
T ss_pred             CCeEEEEeecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeccccCcceEEEc---------------
Confidence            6899999999 78999988765545688999999999999999999997 999999999999993               


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc---
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF---  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~---  270 (447)
                                                                               ....++|+|||.+.......   
T Consensus       139 ---------------------------------------------------------~~~~~kl~d~g~~~~~~~~~~~~  161 (261)
T cd05148         139 ---------------------------------------------------------EDLVCKVADFGLARLIKEDVYLS  161 (261)
T ss_pred             ---------------------------------------------------------CCceEEEccccchhhcCCccccc
Confidence                                                                     35679999999986543221   


Q ss_pred             ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      ....++..|+|||.+.+..++.++|+|||||++|+|++ |..||...+      .......+..  +             
T Consensus       162 ~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~------~~~~~~~~~~--~-------------  220 (261)
T cd05148         162 SDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMN------NHEVYDQITA--G-------------  220 (261)
T ss_pred             cCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCC------HHHHHHHHHh--C-------------
Confidence            12234667999999988889999999999999999998 899996542      1111111110  0             


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                .....+...++.+.+++.+||+.||.+|||++++++
T Consensus       221 --------------------------~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l~~  256 (261)
T cd05148         221 --------------------------YRMPCPAKCPQEIYKIMLECWAAEPEDRPSFKALRE  256 (261)
T ss_pred             --------------------------CcCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHH
Confidence                                      011123345678899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.4e-36  Score=292.76  Aligned_cols=266  Identities=29%  Similarity=0.387  Sum_probs=217.5

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      -..|+..+.||+|+||.|+-|+-..||+-||.|.+.+..    ....-..+|-.+|+.+      +.+.||.+-=+|.  
T Consensus       184 ~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV------~s~FiVslaYAfe--  255 (591)
T KOG0986|consen  184 KNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKV------SSPFIVSLAYAFE--  255 (591)
T ss_pred             ccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHh------ccCcEEEEeeeec--
Confidence            356899999999999999999999999999999655432    2344567899999999      5666776554554  


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                        +.+.+|+||..| ||+|..++......+|++..++.++.+|+.||++||+. +||.||+||+|||+            
T Consensus       256 --Tkd~LClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~-~iVYRDLKPeNILL------------  320 (591)
T KOG0986|consen  256 --TKDALCLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRR-RIVYRDLKPENILL------------  320 (591)
T ss_pred             --CCCceEEEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhc-ceeeccCChhheee------------
Confidence              668999999999 99998877655557899999999999999999999997 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccc--c
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA--N  267 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~--~  267 (447)
                                                                                  +..++++|+|+|+|..+  .
T Consensus       321 ------------------------------------------------------------Dd~GhvRISDLGLAvei~~g  340 (591)
T KOG0986|consen  321 ------------------------------------------------------------DDHGHVRISDLGLAVEIPEG  340 (591)
T ss_pred             ------------------------------------------------------------ccCCCeEeeccceEEecCCC
Confidence                                                                        66889999999999754  4


Q ss_pred             cccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          268 KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       268 ~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                      ++....+||..|||||++.+..|+..+|.|||||++|+|+.|+.||.....+      +.-..+-               
T Consensus       341 ~~~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeK------vk~eEvd---------------  399 (591)
T KOG0986|consen  341 KPIRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEK------VKREEVD---------------  399 (591)
T ss_pred             CccccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhhh------hhHHHHH---------------
Confidence            6667779999999999999999999999999999999999999999765211      1111111               


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC-----ChHHHhcCcccccccCCc
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRNSTR  422 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp-----ta~elL~hp~f~~~~~~~  422 (447)
                                             ..++.....++...++++.+|.+.+|+.||.+|.     .++++-+||||++.+=++
T Consensus       400 -----------------------rr~~~~~~ey~~kFS~eakslc~~LL~Kdp~~RLGcrg~ga~evk~HpfFk~lnw~r  456 (591)
T KOG0986|consen  400 -----------------------RRTLEDPEEYSDKFSEEAKSLCEGLLTKDPEKRLGCRGEGAQEVKEHPFFKDLNWRR  456 (591)
T ss_pred             -----------------------HHHhcchhhcccccCHHHHHHHHHHHccCHHHhccCCCcCcchhhhCcccccCCHhH
Confidence                                   1122233346677789999999999999999997     578999999999987666


Q ss_pred             ccccc
Q 013220          423 DETKN  427 (447)
Q Consensus       423 ~~~~~  427 (447)
                      .+++.
T Consensus       457 leagm  461 (591)
T KOG0986|consen  457 LEAGM  461 (591)
T ss_pred             HhccC
Confidence            65544

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=3.3e-35  Score=288.91  Aligned_cols=248  Identities=22%  Similarity=0.299  Sum_probs=190.6

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCe--EEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSS--YVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~--~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|++.+.||+|+||.||+|++..++.  .+++|.++..  ......+.+|++++..+.     +|+||+++++++... 
T Consensus         7 ~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~-----~h~~iv~~~~~~~~~-   80 (303)
T cd05088           7 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLG-----HHPNIINLLGACEHR-   80 (303)
T ss_pred             hhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhc-----CCCCcceEEEEECCC-
Confidence            579999999999999999999877665  4577765532  234457888999999985     689999999988753 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhc--------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeE
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSR--------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL  176 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~--------------~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nil  176 (447)
                         ...|+||||+ +++|.+++....              ...+++..++.++.|++.||+|||++ ||+||||||+||+
T Consensus        81 ---~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~-gi~H~dlkp~Nil  156 (303)
T cd05088          81 ---GYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK-QFIHRDLAARNIL  156 (303)
T ss_pred             ---CCceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhC-CccccccchheEE
Confidence               6799999999 889998886432              12478889999999999999999996 9999999999999


Q ss_pred             eeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCccccee
Q 013220          177 LVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCK  256 (447)
Q Consensus       177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  256 (447)
                      +                                                                        +....++
T Consensus       157 i------------------------------------------------------------------------~~~~~~k  164 (303)
T cd05088         157 V------------------------------------------------------------------------GENYVAK  164 (303)
T ss_pred             e------------------------------------------------------------------------cCCCcEE
Confidence            9                                                                        3356799


Q ss_pred             EeecCccccccccccc--CCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHH
Q 013220          257 VVDFGNACRANKQFAE--EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMME  333 (447)
Q Consensus       257 L~Dfg~a~~~~~~~~~--~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~  333 (447)
                      |+|||++.........  ...+..|+|||.+.+..++.++|||||||++|+|++ |..||...+.      ......   
T Consensus       165 l~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~------~~~~~~---  235 (303)
T cd05088         165 IADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC------AELYEK---  235 (303)
T ss_pred             eCccccCcccchhhhcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCCh------HHHHHH---
Confidence            9999998643222111  223567999999988888999999999999999998 9999965421      111000   


Q ss_pred             HhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          334 LIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       334 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                      .....                                      ....+...+..+.+||.+||+.+|++||+++++|.+
T Consensus       236 ~~~~~--------------------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  276 (303)
T cd05088         236 LPQGY--------------------------------------RLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVS  276 (303)
T ss_pred             HhcCC--------------------------------------cCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            00000                                      001122345678899999999999999999999976

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=100.00  E-value=1.4e-34  Score=275.59  Aligned_cols=249  Identities=29%  Similarity=0.465  Sum_probs=199.1

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      +|++.++||.|+||.||++.+..+++.+++|.+....   .....+.+|+++++.+      .|+||+++++.+...   
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~~---   71 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASV------NHPNIISYKEAFLDG---   71 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhC------CCCCchhhhhhhccC---
Confidence            5899999999999999999999999999999876532   2344667899999988      788999999988753   


Q ss_pred             cceEEEEEecc-cccHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSR--YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~--~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                       ...++||||+ +++|.+.+....  ...+++..+..++.|++.||+|||+. |++|+||+|+||+++.           
T Consensus        72 -~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~-~i~h~~l~~~ni~~~~-----------  138 (256)
T cd08530          72 -NKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQ-KILHRDLKSANILLVA-----------  138 (256)
T ss_pred             -CEEEEEehhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhC-CcccCCCCcceEEEec-----------
Confidence             7899999999 888988775422  24578889999999999999999996 9999999999999943           


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF  270 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~  270 (447)
                                                                                   ...++|+|||.+.......
T Consensus       139 -------------------------------------------------------------~~~~kl~d~g~~~~~~~~~  157 (256)
T cd08530         139 -------------------------------------------------------------NDLVKIGDLGISKVLKKNM  157 (256)
T ss_pred             -------------------------------------------------------------CCcEEEeeccchhhhccCC
Confidence                                                                         4569999999986554332


Q ss_pred             -ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 -AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 -~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                       ....++..|+|||.+.+..++.++|+||||+++|+|++|+.||...+       ......... .+..           
T Consensus       158 ~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~-------~~~~~~~~~-~~~~-----------  218 (256)
T cd08530         158 AKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARS-------MQDLRYKVQ-RGKY-----------  218 (256)
T ss_pred             cccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC-------HHHHHHHHh-cCCC-----------
Confidence             23467889999999988889999999999999999999999996542       111100000 0000           


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                                                  ...+...+.++.++|.+||+.+|++|||+.++++||++
T Consensus       219 ----------------------------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~p~~  256 (256)
T cd08530         219 ----------------------------PPIPPIYSQDLQNFIRSMLQVKPKLRPNCDKILASPAV  256 (256)
T ss_pred             ----------------------------CCCchhhCHHHHHHHHHHcCCCcccCCCHHHHhcCCCC
Confidence                                        01223446689999999999999999999999999985

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=8.4e-35  Score=277.24  Aligned_cols=241  Identities=27%  Similarity=0.410  Sum_probs=194.3

Q ss_pred             EeecccCceEEEEEEeCCC---CeEEEEEEechhHHh--HHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcce
Q 013220           42 RKLGWGQFSIVWLAYDTRT---SSYVALKIQKSAAQF--AQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQH  116 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~---~~~vaiK~~~~~~~~--~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~  116 (447)
                      +.||+|+||.||+|.+...   +..|++|++......  .+.+.+|+++++.+      .|++|+++++++..    +..
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~------~~~~i~~~~~~~~~----~~~   70 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKL------GHPNVVRLLGVCTE----EEP   70 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhc------CCCChheeeeeecC----CCc
Confidence            4689999999999998865   899999988765433  56788999999999      78999999998875    468


Q ss_pred             EEEEEecc-cccHHHHHHhhc-------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          117 LCMVLEFL-GDSLLRLIKYSR-------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       117 ~~lvmE~~-~~~L~~~~~~~~-------~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                      .+++|||+ +++|.+.+....       ...+++..+..++.|++.||+|||++ |++|+||+|+||++           
T Consensus        71 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~-~i~H~di~p~nili-----------  138 (262)
T cd00192          71 LYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASK-KFVHRDLAARNCLV-----------  138 (262)
T ss_pred             eEEEEEeccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcC-CcccCccCcceEEE-----------
Confidence            99999999 899999886541       24589999999999999999999996 99999999999999           


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                   +....++|+|||.+.....
T Consensus       139 -------------------------------------------------------------~~~~~~~l~dfg~~~~~~~  157 (262)
T cd00192         139 -------------------------------------------------------------GEDLVVKISDFGLSRDVYD  157 (262)
T ss_pred             -------------------------------------------------------------CCCCcEEEccccccccccc
Confidence                                                                         3356799999999976543


Q ss_pred             c-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh
Q 013220          269 Q-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  342 (447)
Q Consensus       269 ~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (447)
                      .     .....++..|+|||.+....++.++|||||||++|+|++ |..||...+      .......+..         
T Consensus       158 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~------~~~~~~~~~~---------  222 (262)
T cd00192         158 DDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLS------NEEVLEYLRK---------  222 (262)
T ss_pred             ccccccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCC------HHHHHHHHHc---------
Confidence            2     233456889999999988889999999999999999998 699997542      1111111110         


Q ss_pred             hhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                      ......+...+.++.+++.+||+.||.+|||+.|++++
T Consensus       223 --------------------------------~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~  260 (262)
T cd00192         223 --------------------------------GYRLPKPEYCPDELYELMLSCWQLDPEDRPTFSELVER  260 (262)
T ss_pred             --------------------------------CCCCCCCccCChHHHHHHHHHccCCcccCcCHHHHHHh
Confidence                                            01112334456789999999999999999999999875

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=4.2e-35  Score=285.67  Aligned_cols=248  Identities=21%  Similarity=0.362  Sum_probs=192.6

Q ss_pred             cCCceEEEEeecccCceEEEEEEe-----CCCCeEEEEEEechh-HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           34 NGGRYIAQRKLGWGQFSIVWLAYD-----TRTSSYVALKIQKSA-AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        34 ~~~~y~l~~~lG~G~~g~Vy~a~~-----~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      +...|.+.+.||+|+||.||++.+     ..++..+|+|.+... ......+.+|+++++.+      .|++|+++++++
T Consensus         3 ~~~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~   76 (288)
T cd05093           3 KRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNL------QHEHIVKFYGVC   76 (288)
T ss_pred             chHHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhC------CCCCcceEEEEE
Confidence            457899999999999999999975     234667999987643 33355788999999999      789999999988


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhc-----------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCe
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSR-----------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENI  175 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~-----------~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Ni  175 (447)
                      ..    +...++||||+ +++|.+++....           ...+++..+..++.|++.||+|||++ |++||||||+||
T Consensus        77 ~~----~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~-~i~H~dlkp~Ni  151 (288)
T cd05093          77 VE----GDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQ-HFVHRDLATRNC  151 (288)
T ss_pred             ec----CCccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC-CeeecccCcceE
Confidence            74    36899999999 889988875432           12388999999999999999999997 999999999999


Q ss_pred             EeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccce
Q 013220          176 LLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRC  255 (447)
Q Consensus       176 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (447)
                      ++                                                                        +....+
T Consensus       152 li------------------------------------------------------------------------~~~~~~  159 (288)
T cd05093         152 LV------------------------------------------------------------------------GENLLV  159 (288)
T ss_pred             EE------------------------------------------------------------------------ccCCcE
Confidence            99                                                                        335679


Q ss_pred             eEeecCccccccccc-----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHH
Q 013220          256 KVVDFGNACRANKQF-----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLA  329 (447)
Q Consensus       256 kL~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~  329 (447)
                      +|+|||.+.......     ....++..|+|||.+.+..++.++|+|||||++|+|++ |..||....      ......
T Consensus       160 kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~------~~~~~~  233 (288)
T cd05093         160 KIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS------NNEVIE  233 (288)
T ss_pred             EeccCCccccccCCceeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC------HHHHHH
Confidence            999999987543221     12234678999999988889999999999999999998 899986542      111111


Q ss_pred             HHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHH
Q 013220          330 LMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQC  409 (447)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~el  409 (447)
                      .+..  +..                                       ...+...+.++.+|+.+||+.||.+|||+.++
T Consensus       234 ~i~~--~~~---------------------------------------~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~v  272 (288)
T cd05093         234 CITQ--GRV---------------------------------------LQRPRTCPKEVYDLMLGCWQREPHMRLNIKEI  272 (288)
T ss_pred             HHHc--CCc---------------------------------------CCCCCCCCHHHHHHHHHHccCChhhCCCHHHH
Confidence            1100  000                                       01122345678999999999999999999998


Q ss_pred             hc
Q 013220          410 LQ  411 (447)
Q Consensus       410 L~  411 (447)
                      ++
T Consensus       273 ~~  274 (288)
T cd05093         273 HS  274 (288)
T ss_pred             HH
Confidence            54

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=100.00  E-value=5e-35  Score=277.91  Aligned_cols=239  Identities=32%  Similarity=0.478  Sum_probs=195.8

Q ss_pred             ecccCceEEEEEEeCCCCeEEEEEEechhHH----hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEE
Q 013220           44 LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ----FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCM  119 (447)
Q Consensus        44 lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~----~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~l  119 (447)
                      ||.|+||.||++.+..+++.||+|++.....    ....+.+|+++++.+      .|++|+++++.+..    +...++
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~----~~~~~~   70 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRI------NHPFIVKLHYAFQT----EEKLYL   70 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHc------CCCcHHHHHHHeec----CCeeEE
Confidence            6999999999999988899999998765432    345788899999999      78999999988864    478999


Q ss_pred             EEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCC
Q 013220          120 VLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER  198 (447)
Q Consensus       120 vmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~  198 (447)
                      +|||+ +++|.+.+....  .+++..+..++.|++.||.|||+. +++|+||+|+||++.                    
T Consensus        71 v~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lh~~-~~~H~~l~p~ni~~~--------------------  127 (250)
T cd05123          71 VLEYAPGGELFSHLSKEG--RFSEERARFYAAEIVLALEYLHSL-GIIYRDLKPENILLD--------------------  127 (250)
T ss_pred             EEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC-CceecCCCcceEEEc--------------------
Confidence            99999 889998886543  488999999999999999999996 999999999999993                    


Q ss_pred             CCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---cccCCC
Q 013220          199 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEIQ  275 (447)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~~~~~g  275 (447)
                                                                          ....++|+|||.+......   .....+
T Consensus       128 ----------------------------------------------------~~~~~~l~d~~~~~~~~~~~~~~~~~~~  155 (250)
T cd05123         128 ----------------------------------------------------ADGHIKLTDFGLAKELSSEGSRTNTFCG  155 (250)
T ss_pred             ----------------------------------------------------CCCcEEEeecCcceecccCCCcccCCcC
Confidence                                                                3567999999998755432   334567


Q ss_pred             CCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcc
Q 013220          276 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  355 (447)
Q Consensus       276 t~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  355 (447)
                      +..|+|||.+.+...+.++|+||||+++|++++|..||...+      .......+                        
T Consensus       156 ~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~------~~~~~~~~------------------------  205 (250)
T cd05123         156 TPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAED------RKEIYEKI------------------------  205 (250)
T ss_pred             CccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCC------HHHHHHHH------------------------
Confidence            889999999988888999999999999999999999996542      11111111                        


Q ss_pred             cchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCCh---HHHhcCccc
Q 013220          356 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA---QQCLQHPWL  415 (447)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta---~elL~hp~f  415 (447)
                                        ......++...+..+.++|.+||..||++|||+   +++++||||
T Consensus       206 ------------------~~~~~~~~~~~~~~l~~~i~~~l~~~p~~R~~~~~~~~l~~~~~f  250 (250)
T cd05123         206 ------------------LKDPLRFPEFLSPEARDLISGLLQKDPTKRLGSGGAEEIKAHPFF  250 (250)
T ss_pred             ------------------hcCCCCCCCCCCHHHHHHHHHHhcCCHhhCCCcccHHHHHhCCCC
Confidence                              111222444457788999999999999999999   999999998

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=1.1e-34  Score=281.73  Aligned_cols=247  Identities=19%  Similarity=0.309  Sum_probs=190.8

Q ss_pred             CceEEEEeecccCceEEEEEEeC----CCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDT----RTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~----~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      ..|++.++||+|+||+||+|...    ..+..|++|.++...  .....+.+|+++++.+      .|+||+++++++..
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~~~~~~~~   78 (283)
T cd05090           5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAEL------HHPNIVCLLGVVTQ   78 (283)
T ss_pred             hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhC------CCCCeeeEEEEEec
Confidence            46999999999999999999853    456789999876322  2335678899999999      78999999998764


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhc---------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCC
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSR---------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPE  173 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~---------------~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~  173 (447)
                          +...|+||||+ +++|.+++....               ...+++..+..++.|++.||+|||++ ||+|+||||+
T Consensus        79 ----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~-~i~H~dlkp~  153 (283)
T cd05090          79 ----EQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSH-FFVHKDLAAR  153 (283)
T ss_pred             ----CCceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhc-Ceehhccccc
Confidence                46899999999 788988874321               12367888899999999999999997 9999999999


Q ss_pred             CeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCccc
Q 013220          174 NILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDM  253 (447)
Q Consensus       174 Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (447)
                      ||++.                                                                        ...
T Consensus       154 nili~------------------------------------------------------------------------~~~  161 (283)
T cd05090         154 NILIG------------------------------------------------------------------------EQL  161 (283)
T ss_pred             eEEEc------------------------------------------------------------------------CCC
Confidence            99993                                                                        355


Q ss_pred             ceeEeecCcccccccc-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHH
Q 013220          254 RCKVVDFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDH  327 (447)
Q Consensus       254 ~~kL~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~  327 (447)
                      .++|+|||++......     .....++..|+|||.+.+..++.++|+|||||++|+|++ |..||.+.+      ....
T Consensus       162 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~------~~~~  235 (283)
T cd05090         162 HVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFS------NQEV  235 (283)
T ss_pred             cEEeccccccccccCCcceecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCC------HHHH
Confidence            6999999999654321     122345677999999988889999999999999999998 988986542      1111


Q ss_pred             HHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChH
Q 013220          328 LALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQ  407 (447)
Q Consensus       328 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~  407 (447)
                      +..+..   .                                      .....+...+..+.+++.+||+.||++||++.
T Consensus       236 ~~~~~~---~--------------------------------------~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~  274 (283)
T cd05090         236 IEMVRK---R--------------------------------------QLLPCSEDCPPRMYSLMTECWQEGPSRRPRFK  274 (283)
T ss_pred             HHHHHc---C--------------------------------------CcCCCCCCCCHHHHHHHHHHcccCcccCcCHH
Confidence            111110   0                                      00112334566889999999999999999999


Q ss_pred             HHhcC
Q 013220          408 QCLQH  412 (447)
Q Consensus       408 elL~h  412 (447)
                      +++++
T Consensus       275 ~i~~~  279 (283)
T cd05090         275 DIHTR  279 (283)
T ss_pred             HHHHH
Confidence            99865

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=100.00  E-value=2.8e-35  Score=279.05  Aligned_cols=228  Identities=26%  Similarity=0.320  Sum_probs=181.8

Q ss_pred             cCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEEEecc-c
Q 013220           47 GQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-G  125 (447)
Q Consensus        47 G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~  125 (447)
                      |.+|.||++++..+++.||+|.+.....    ...|...+...      .|+||+++++++..    .+..+++|||+ +
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~~----~~~~~~~~~~~------~~~~i~~~~~~~~~----~~~~~lv~e~~~~   69 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSSE----YSRERLTIIPH------CVPNMVCLHKYIVS----EDSVFLVLQHAEG   69 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchhh----hhhHHHHHHhc------CCCceeehhhheec----CCeEEEEEecCCC
Confidence            8999999999999999999998876532    23333333332      68999999998875    37899999999 7


Q ss_pred             ccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCC
Q 013220          126 DSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSING  205 (447)
Q Consensus       126 ~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (447)
                      ++|.+.+...  ..+++..+..++.|++.||+|||+. ||+||||||+||++                            
T Consensus        70 ~~L~~~l~~~--~~l~~~~~~~~~~ql~~~l~~lH~~-~i~H~dlkp~Nil~----------------------------  118 (237)
T cd05576          70 GKLWSHISKF--LNIPEECVKRWAAEMVVALDALHRE-GIVCRDLNPNNILL----------------------------  118 (237)
T ss_pred             CCHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCHHHEEE----------------------------
Confidence            8998887654  3489999999999999999999996 99999999999999                            


Q ss_pred             CCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccccCCCCCCccChHHh
Q 013220          206 GSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVI  285 (447)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~l  285 (447)
                                                                  +....++++|||.+...........++..|+|||.+
T Consensus       119 --------------------------------------------~~~~~~~l~df~~~~~~~~~~~~~~~~~~y~aPE~~  154 (237)
T cd05576         119 --------------------------------------------DDRGHIQLTYFSRWSEVEDSCDGEAVENMYCAPEVG  154 (237)
T ss_pred             --------------------------------------------cCCCCEEEecccchhccccccccCCcCccccCCccc
Confidence                                                        335669999999886655544455667889999999


Q ss_pred             hcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhc
Q 013220          286 LRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRL  365 (447)
Q Consensus       286 ~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (447)
                      .+..++.++|+||+||++|+|++|..||......                      +.           .          
T Consensus       155 ~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~----------------------~~-----------~----------  191 (237)
T cd05576         155 GISEETEACDWWSLGAILFELLTGKTLVECHPSG----------------------IN-----------T----------  191 (237)
T ss_pred             CCCCCCchhhHHHHHHHHHHHHHCcchhhcCchh----------------------cc-----------c----------
Confidence            8888899999999999999999999887532100                      00           0          


Q ss_pred             ccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCCh-----HHHhcCccc
Q 013220          366 KFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA-----QQCLQHPWL  415 (447)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta-----~elL~hp~f  415 (447)
                               .....++...+..+.+||.+||+.||.+|||+     +++++||||
T Consensus       192 ---------~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~h~~~  237 (237)
T cd05576         192 ---------HTTLNIPEWVSEEARSLLQQLLQFNPTERLGAGVAGVEDIKSHPFF  237 (237)
T ss_pred             ---------ccccCCcccCCHHHHHHHHHHccCCHHHhcCCCccchHHHHcCCCC
Confidence                     00011233456688999999999999999996     999999998

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.4e-35  Score=281.07  Aligned_cols=245  Identities=22%  Similarity=0.353  Sum_probs=192.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      .+|++.+.||+|+||.||+|.+. ++..+|+|++.........+.+|+++++.+      .|+||+++++.+...    .
T Consensus         4 ~~~~~~~~lg~G~~~~v~~~~~~-~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~~----~   72 (256)
T cd05059           4 SELTFLKELGSGQFGVVHLGKWR-GKIDVAIKMIREGAMSEDDFIEEAKVMMKL------SHPNLVQLYGVCTKQ----R   72 (256)
T ss_pred             HHcchhhhhccCCCceEEEeEec-CCccEEEEEeccCCCCHHHHHHHHHHHHhC------CCCCEEEEEEEEcCC----C
Confidence            46899999999999999999875 466899998875544456788899999998      789999999987643    6


Q ss_pred             eEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          116 HLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       116 ~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      ..++||||+ +++|.+++.... ..+++..+..++.|++.||+|||+. |++||||||+||++                 
T Consensus        73 ~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~-~i~H~dl~p~ni~i-----------------  133 (256)
T cd05059          73 PIFIVTEYMANGCLLNYLRERK-GKLGTEWLLDMCSDVCEAMEYLESN-GFIHRDLAARNCLV-----------------  133 (256)
T ss_pred             ceEEEEecCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHC-CcccccccHhhEEE-----------------
Confidence            799999999 889998886533 3578999999999999999999996 99999999999999                 


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccc-cC
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA-EE  273 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~-~~  273 (447)
                                                                             +..+.++|+|||.+........ ..
T Consensus       134 -------------------------------------------------------~~~~~~kl~dfg~~~~~~~~~~~~~  158 (256)
T cd05059         134 -------------------------------------------------------GEDNVVKVSDFGLARYVLDDQYTSS  158 (256)
T ss_pred             -------------------------------------------------------CCCCcEEECCcccceeccccccccc
Confidence                                                                   3356799999998864432211 11


Q ss_pred             ---CCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          274 ---IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       274 ---~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                         .++..|+|||.+.+..++.++|+|||||++|++++ |..||...+      .......+..   ..           
T Consensus       159 ~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~------~~~~~~~~~~---~~-----------  218 (256)
T cd05059         159 QGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFS------NSEVVESVSA---GY-----------  218 (256)
T ss_pred             CCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCC------HHHHHHHHHc---CC-----------
Confidence               22357999999998889999999999999999998 899986542      1111111100   00           


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                 ....+...+.++.+++.+||..+|++|||+.++++.
T Consensus       219 ---------------------------~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~~~l~~  254 (256)
T cd05059         219 ---------------------------RLYRPKLAPTEVYTIMYSCWHEKPEDRPAFKKLLSQ  254 (256)
T ss_pred             ---------------------------cCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHH
Confidence                                       011223346789999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=100.00  E-value=1.2e-34  Score=282.47  Aligned_cols=255  Identities=24%  Similarity=0.378  Sum_probs=199.3

Q ss_pred             ceEEEEeecccCceEEEEEEeC---CCCeEEEEEEechhH-----HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDT---RTSSYVALKIQKSAA-----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~---~~~~~vaiK~~~~~~-----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      .|++.+.||.|+||.||+|++.   .++..||+|+++...     ...+.+.+|+++++.+.     +|++|+++++.+.
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~-----~~~~i~~~~~~~~   75 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIR-----QSPFLVTLHYAFQ   75 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcc-----cCCChhceeeEee
Confidence            4899999999999999999874   478999999887532     23456788999999985     6899999998887


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCc
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                      .    +...++||||+ +++|.+.+...  ..+++..+..++.|++.||+|||+. |++||||+|+||++          
T Consensus        76 ~----~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~al~~lH~~-~i~H~dl~p~nil~----------  138 (290)
T cd05613          76 T----DTKLHLILDYINGGELFTHLSQR--ERFKEQEVQIYSGEIVLALEHLHKL-GIIYRDIKLENILL----------  138 (290)
T ss_pred             c----CCeEEEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCHHHeEE----------
Confidence            4    36899999999 78998887654  3588999999999999999999996 99999999999999          


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                    +.+..++|+|||++....
T Consensus       139 --------------------------------------------------------------~~~~~~kl~dfg~~~~~~  156 (290)
T cd05613         139 --------------------------------------------------------------DSNGHVVLTDFGLSKEFH  156 (290)
T ss_pred             --------------------------------------------------------------CCCCCEEEeeCccceecc
Confidence                                                                          335679999999986543


Q ss_pred             cc----cccCCCCCCccChHHhhcC--CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          268 KQ----FAEEIQTRQYRAPEVILRA--GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       268 ~~----~~~~~gt~~y~aPE~l~~~--~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                      ..    .....++..|+|||.+.+.  .++.++|+|||||++|+|++|..||......      .....+.+        
T Consensus       157 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~------~~~~~~~~--------  222 (290)
T cd05613         157 EDEVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEK------NSQAEISR--------  222 (290)
T ss_pred             cccccccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCCcc------ccHHHHHH--------
Confidence            21    1234578999999998753  4678999999999999999999999643211      00111111        


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC-----ChHHHhcCcccc
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLS  416 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp-----ta~elL~hp~f~  416 (447)
                                                    .+......++...+..+.+|+.+||+.||++||     ++++++.||||.
T Consensus       223 ------------------------------~~~~~~~~~~~~~~~~~~~ll~~~l~~~p~~R~~~~~~~~~~l~~~~~~~  272 (290)
T cd05613         223 ------------------------------RILKSEPPYPQEMSALAKDIIQRLLMKDPKKRLGCGPSDADEIKKHPFFQ  272 (290)
T ss_pred             ------------------------------HhhccCCCCCccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHcCcccc
Confidence                                          011111123344566888999999999999997     899999999999


Q ss_pred             ccc
Q 013220          417 LRN  419 (447)
Q Consensus       417 ~~~  419 (447)
                      ..+
T Consensus       273 ~~~  275 (290)
T cd05613         273 KIN  275 (290)
T ss_pred             cCC
Confidence            865

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=100.00  E-value=6.7e-35  Score=287.37  Aligned_cols=253  Identities=27%  Similarity=0.383  Sum_probs=198.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh----HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA----AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~----~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ..|...+.||+|+||.||+|++..++..+|+|.+...    ......+.+|+++++.+      +|++++++++++... 
T Consensus        15 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~~-   87 (308)
T cd06634          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKL------RHPNTIQYRGCYLRE-   87 (308)
T ss_pred             HHHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhC------CCCCcccEEEEEEcC-
Confidence            4588889999999999999999989999999986532    22344677899999999      788999999988753 


Q ss_pred             CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          112 PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       112 ~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                         ...++||||+.+++.+.+.... ..+++..+..++.|++.||.|||++ +++||||+|+||++              
T Consensus        88 ---~~~~lv~e~~~~~l~~~~~~~~-~~l~~~~~~~~~~~l~~~l~~LH~~-~i~H~dl~p~nil~--------------  148 (308)
T cd06634          88 ---HTAWLVMEYCLGSASDLLEVHK-KPLQEVEIAAVTHGALQGLAYLHSH-NMIHRDVKAGNILL--------------  148 (308)
T ss_pred             ---CeeEEEEEccCCCHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCHHhEEE--------------
Confidence               6899999999777777665432 4588999999999999999999996 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccc
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA  271 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~  271 (447)
                                                                                +....++|+|||.+..... ..
T Consensus       149 ----------------------------------------------------------~~~~~~kl~dfg~~~~~~~-~~  169 (308)
T cd06634         149 ----------------------------------------------------------SEPGLVKLGDFGSASIMAP-AN  169 (308)
T ss_pred             ----------------------------------------------------------CCCCcEEECCcccceeecC-cc
Confidence                                                                      3356799999998865433 23


Q ss_pred             cCCCCCCccChHHhhc---CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHh-CCCCHHhhhCCC
Q 013220          272 EEIQTRQYRAPEVILR---AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI-GKMPRKIAIGGA  347 (447)
Q Consensus       272 ~~~gt~~y~aPE~l~~---~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~  347 (447)
                      ...++..|+|||.+.+   ..++.++|||||||++|+|++|..||...+      .   ...+.... +..+.       
T Consensus       170 ~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~------~---~~~~~~~~~~~~~~-------  233 (308)
T cd06634         170 XFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN------A---MSALYHIAQNESPA-------  233 (308)
T ss_pred             cccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCcccc------H---HHHHHHHhhcCCCC-------
Confidence            4567899999999853   457889999999999999999999986432      0   11111110 00000       


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccC
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~  420 (447)
                                                     ......+..+.+||.+||+.+|++|||++++++|||+.....
T Consensus       234 -------------------------------~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~ll~~~~~~~~~~  275 (308)
T cd06634         234 -------------------------------LQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLRERP  275 (308)
T ss_pred             -------------------------------cCcccccHHHHHHHHHHhhCCcccCCCHHHHhhCccccccCC
Confidence                                           011234567899999999999999999999999999987543

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=1.2e-34  Score=282.68  Aligned_cols=251  Identities=23%  Similarity=0.346  Sum_probs=193.8

Q ss_pred             ccCCceEEEEeecccCceEEEEEEeCCC-----CeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecc
Q 013220           33 FNGGRYIAQRKLGWGQFSIVWLAYDTRT-----SSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLID  105 (447)
Q Consensus        33 ~~~~~y~l~~~lG~G~~g~Vy~a~~~~~-----~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~  105 (447)
                      +..++|++.+.||+|+||.||+|.+...     ...+|+|.+...  ......+.+|+++++.+.     +|+||+++++
T Consensus         9 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~~i~~~~~   83 (293)
T cd05053           9 LPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIG-----KHKNIINLLG   83 (293)
T ss_pred             cCHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhc-----CCCCeeeEEE
Confidence            3457899999999999999999987643     378999987653  233456888999999884     6899999999


Q ss_pred             cccccCCCcceEEEEEecc-cccHHHHHHhh--------------ccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccC
Q 013220          106 HFKHAGPNGQHLCMVLEFL-GDSLLRLIKYS--------------RYKGLELNKVREICKYILTGLDYLHRELGIIHTDL  170 (447)
Q Consensus       106 ~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~--------------~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Di  170 (447)
                      ++...    ..++++|||+ +++|..++...              ....+++..+..++.|++.||+|||++ ||+||||
T Consensus        84 ~~~~~----~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~-~ivH~dl  158 (293)
T cd05053          84 VCTQE----GPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASK-KCIHRDL  158 (293)
T ss_pred             EEcCC----CCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHC-Ccccccc
Confidence            88753    5799999999 88998888542              123478889999999999999999996 9999999


Q ss_pred             CCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCC
Q 013220          171 KPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDG  250 (447)
Q Consensus       171 kp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (447)
                      ||+||++.                                                                        
T Consensus       159 kp~Nil~~------------------------------------------------------------------------  166 (293)
T cd05053         159 AARNVLVT------------------------------------------------------------------------  166 (293)
T ss_pred             ceeeEEEc------------------------------------------------------------------------
Confidence            99999993                                                                        


Q ss_pred             cccceeEeecCccccccccc-----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCc
Q 013220          251 IDMRCKVVDFGNACRANKQF-----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCED  324 (447)
Q Consensus       251 ~~~~~kL~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~  324 (447)
                      .+..++|+|||.+.......     ....++..|+|||.+.+..++.++|||||||++|+|++ |..||....      .
T Consensus       167 ~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~------~  240 (293)
T cd05053         167 EDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIP------V  240 (293)
T ss_pred             CCCeEEeCccccccccccccceeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCCC------H
Confidence            35679999999987543321     11224567999999988889999999999999999997 999986542      1


Q ss_pred             hHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC
Q 013220          325 EDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP  404 (447)
Q Consensus       325 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp  404 (447)
                      ......+..  +                                       .....+...+..+.+|+.+||..||++||
T Consensus       241 ~~~~~~~~~--~---------------------------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rp  279 (293)
T cd05053         241 EELFKLLKE--G---------------------------------------YRMEKPQNCTQELYHLMRDCWHEVPSQRP  279 (293)
T ss_pred             HHHHHHHHc--C---------------------------------------CcCCCCCCCCHHHHHHHHHHcccCcccCc
Confidence            111111100  0                                       00112334466889999999999999999


Q ss_pred             ChHHHhcC
Q 013220          405 TAQQCLQH  412 (447)
Q Consensus       405 ta~elL~h  412 (447)
                      |+.+++++
T Consensus       280 s~~eil~~  287 (293)
T cd05053         280 TFKQLVED  287 (293)
T ss_pred             CHHHHHHH
Confidence            99999875

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=9.3e-35  Score=279.22  Aligned_cols=249  Identities=25%  Similarity=0.357  Sum_probs=194.0

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh----HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA----AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~----~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|++.+.||.|+||.||+|++..++..||+|.+...    ......+.+|+++++.+      +|+||+++++.+..  
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~------~h~~i~~~~~~~~~--   73 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQL------NHPNVIKYYASFIE--   73 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHc------cCCchhhhhheeEe--
Confidence            4799999999999999999999889999999976532    23345778899999998      78999999998875  


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~--~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                        +...+++|||+ +++|.+++...  ....+++..+..++.|++.||+|||+. |++|+||||+||++.          
T Consensus        74 --~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~-~i~H~dl~p~nili~----------  140 (267)
T cd08229          74 --DNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSR-RVMHRDIKPANVFIT----------  140 (267)
T ss_pred             --CCeEEEEEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEEc----------
Confidence              36899999999 78898887542  123478899999999999999999996 999999999999993          


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                    ....++|+|||.+.....
T Consensus       141 --------------------------------------------------------------~~~~~~l~dfg~~~~~~~  158 (267)
T cd08229         141 --------------------------------------------------------------ATGVVKLGDLGLGRFFSS  158 (267)
T ss_pred             --------------------------------------------------------------CCCCEEECcchhhhcccc
Confidence                                                                          355799999998864432


Q ss_pred             c---cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          269 Q---FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       269 ~---~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                      .   .....++..|+|||.+.+..++.++|+||||+++|+|++|..||.....     +   .....+.+....      
T Consensus       159 ~~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~-----~---~~~~~~~~~~~~------  224 (267)
T cd08229         159 KTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKM-----N---LYSLCKKIEQCD------  224 (267)
T ss_pred             CCcccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccc-----h---HHHHhhhhhcCC------
Confidence            2   1234688999999999888899999999999999999999999965421     0   000000000000      


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                    .....+...+..+.++|.+||+.||++|||+.++++
T Consensus       225 ------------------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~  260 (267)
T cd08229         225 ------------------------------YPPLPSDHYSEELRQLVNMCINPDPEKRPDITYVYD  260 (267)
T ss_pred             ------------------------------CCCCCcccccHHHHHHHHHhcCCCcccCCCHHHHHH
Confidence                                          000011234678999999999999999999997763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=1.5e-34  Score=279.84  Aligned_cols=248  Identities=23%  Similarity=0.377  Sum_probs=190.1

Q ss_pred             CCceEEEEeecccCceEEEEEEeC-----CCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDT-----RTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~-----~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      .++|++.++||+|+||.||+|.+.     .++..||+|.+....  .....+.+|+.+++.+      +|+||+++++.+
T Consensus         5 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l------~~~~iv~~~~~~   78 (277)
T cd05062           5 REKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEF------NCHHVVRLLGVV   78 (277)
T ss_pred             HHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhC------CCCCeeeEEEEE
Confidence            478999999999999999999764     235789999875432  2344678899999988      789999999987


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhcc--------CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEee
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSRY--------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV  178 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~--------~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~  178 (447)
                      ..    +...++||||+ +++|.+++.....        ..++...+..++.|++.||+|||+. |++|+||||+||++ 
T Consensus        79 ~~----~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~-~~vH~dlkp~Nil~-  152 (277)
T cd05062          79 SQ----GQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNAN-KFVHRDLAARNCMV-  152 (277)
T ss_pred             cC----CCCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCcchheEEE-
Confidence            64    36899999999 8899888754321        1246678889999999999999996 99999999999999 


Q ss_pred             ecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEe
Q 013220          179 STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVV  258 (447)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~  258 (447)
                                                                                             +....++|+
T Consensus       153 -----------------------------------------------------------------------~~~~~~~l~  161 (277)
T cd05062         153 -----------------------------------------------------------------------AEDFTVKIG  161 (277)
T ss_pred             -----------------------------------------------------------------------cCCCCEEEC
Confidence                                                                                   335679999


Q ss_pred             ecCccccccccc-----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHH
Q 013220          259 DFGNACRANKQF-----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMM  332 (447)
Q Consensus       259 Dfg~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~  332 (447)
                      |||++.......     ....++..|+|||.+.+..++.++|+|||||++|+|++ |..||....      .......+.
T Consensus       162 dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~------~~~~~~~~~  235 (277)
T cd05062         162 DFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMS------NEQVLRFVM  235 (277)
T ss_pred             CCCCccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCC------HHHHHHHHH
Confidence            999986443211     12245678999999998889999999999999999998 688886542      111111111


Q ss_pred             HHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          333 ELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       333 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                      .  +.                                       ....+...+..+.+++.+||+.||++|||+.|++++
T Consensus       236 ~--~~---------------------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~  274 (277)
T cd05062         236 E--GG---------------------------------------LLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISS  274 (277)
T ss_pred             c--CC---------------------------------------cCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            0  00                                       001223346688999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=1.2e-34  Score=279.22  Aligned_cols=248  Identities=22%  Similarity=0.302  Sum_probs=187.8

Q ss_pred             EEEEeecccCceEEEEEEeCCCCe--EEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC-
Q 013220           39 IAQRKLGWGQFSIVWLAYDTRTSS--YVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP-  112 (447)
Q Consensus        39 ~l~~~lG~G~~g~Vy~a~~~~~~~--~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~-  112 (447)
                      .+.+.||+|+||.||+|++..++.  .+|+|.++..   ....+.+..|+++++.+      +|+||+++++.+..... 
T Consensus         2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~~~~~   75 (272)
T cd05075           2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEF------DHPNVMRLIGVCLQTVES   75 (272)
T ss_pred             ccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhC------CCCCcceEEEEEccCCcc
Confidence            467889999999999998876664  6899987543   33356788899999998      78999999987654321 


Q ss_pred             -CcceEEEEEecc-cccHHHHHHhhc----cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCC
Q 013220          113 -NGQHLCMVLEFL-GDSLLRLIKYSR----YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKD  186 (447)
Q Consensus       113 -~~~~~~lvmE~~-~~~L~~~~~~~~----~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~  186 (447)
                       .....+++|||+ +++|.+.+....    ...+++..+..++.|++.||+|||++ ||+||||||+||++         
T Consensus        76 ~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dlkp~Nil~---------  145 (272)
T cd05075          76 EGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSK-SFIHRDLAARNCML---------  145 (272)
T ss_pred             cCCCCcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHC-CeeccccchhheEE---------
Confidence             223689999999 788887764322    23478899999999999999999996 99999999999999         


Q ss_pred             cccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccc
Q 013220          187 PIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA  266 (447)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~  266 (447)
                                                                                     +....++|+|||++...
T Consensus       146 ---------------------------------------------------------------~~~~~~kl~Dfg~~~~~  162 (272)
T cd05075         146 ---------------------------------------------------------------NENMNVCVADFGLSKKI  162 (272)
T ss_pred             ---------------------------------------------------------------cCCCCEEECCCCccccc
Confidence                                                                           33567999999998754


Q ss_pred             ccccc-----cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCH
Q 013220          267 NKQFA-----EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  340 (447)
Q Consensus       267 ~~~~~-----~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~  340 (447)
                      .....     ...++..|+|||.+.+..++.++|||||||++|+|++ |..||....      .......+..  +    
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~------~~~~~~~~~~--~----  230 (272)
T cd05075         163 YNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVE------NSEIYDYLRQ--G----  230 (272)
T ss_pred             CcccceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCC------HHHHHHHHHc--C----
Confidence            33211     1235678999999988889999999999999999998 788986532      1111110000  0    


Q ss_pred             HhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          341 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                         .....+...+..+.++|.+||+.||++|||+.+++++
T Consensus       231 -----------------------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~  267 (272)
T cd05075         231 -----------------------------------NRLKQPPDCLDGLYSLMSSCWLLNPKDRPSFETLRCE  267 (272)
T ss_pred             -----------------------------------CCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence                                               0001223345678999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=100.00  E-value=1.9e-34  Score=285.24  Aligned_cols=255  Identities=28%  Similarity=0.393  Sum_probs=199.0

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh----HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA----AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~----~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ..|...+.||+|+||.||+|++..++..||+|.+...    ......+.+|+++++.+      +|+|++++++++... 
T Consensus        25 ~~f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~~-   97 (317)
T cd06635          25 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRI------KHPNSIEYKGCYLRE-   97 (317)
T ss_pred             hhhhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhC------CCCCEEEEEEEEeeC-
Confidence            3488899999999999999999989999999987532    22345678899999998      788999999988753 


Q ss_pred             CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          112 PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       112 ~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                         ...++||||+.+++.+.+.... ..+++..+..++.|++.||.|||++ ||+|+||+|+||++              
T Consensus        98 ---~~~~lv~e~~~g~l~~~~~~~~-~~l~~~~~~~i~~~i~~~l~~lH~~-~i~H~dL~p~Nil~--------------  158 (317)
T cd06635          98 ---HTAWLVMEYCLGSASDLLEVHK-KPLQEVEIAAITHGALQGLAYLHSH-NMIHRDIKAGNILL--------------  158 (317)
T ss_pred             ---CeEEEEEeCCCCCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCcccEEE--------------
Confidence               6799999999778877765432 4588999999999999999999996 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccc
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA  271 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~  271 (447)
                                                                                +....++|+|||.+..... ..
T Consensus       159 ----------------------------------------------------------~~~~~~kl~dfg~~~~~~~-~~  179 (317)
T cd06635         159 ----------------------------------------------------------TEPGQVKLADFGSASIASP-AN  179 (317)
T ss_pred             ----------------------------------------------------------CCCCCEEEecCCCccccCC-cc
Confidence                                                                      3356799999998764332 23


Q ss_pred             cCCCCCCccChHHhh---cCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          272 EEIQTRQYRAPEVIL---RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       272 ~~~gt~~y~aPE~l~---~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      ...++..|+|||.+.   ...++.++|+|||||++|+|++|..||...+      .......+..  +..+         
T Consensus       180 ~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~------~~~~~~~~~~--~~~~---------  242 (317)
T cd06635         180 SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN------AMSALYHIAQ--NESP---------  242 (317)
T ss_pred             cccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCcc------HHHHHHHHHh--ccCC---------
Confidence            456788999999984   3457899999999999999999999986542      1111111100  0000         


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                                                   .......+..+.+||.+||+.+|.+|||+.++++|+|+......
T Consensus       243 -----------------------------~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~~~~~  286 (317)
T cd06635         243 -----------------------------TLQSNEWSDYFRNFVDSCLQKIPQDRPTSEELLKHMFVLRERPE  286 (317)
T ss_pred             -----------------------------CCCCccccHHHHHHHHHHccCCcccCcCHHHHHhChhhhccCcc
Confidence                                         00112345678999999999999999999999999999765443

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=9e-35  Score=290.98  Aligned_cols=251  Identities=26%  Similarity=0.372  Sum_probs=190.7

Q ss_pred             CCceEEEEeecccCceEEEEEEe-----CCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYD-----TRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~-----~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      .++|++.+.||.|+||.||+|.+     ..+++.||+|+++.+.  .....+.+|++++..+.     +|+||+++++++
T Consensus         6 ~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~niv~~~~~~   80 (343)
T cd05103           6 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIG-----HHLNVVNLLGAC   80 (343)
T ss_pred             hhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhcc-----CCccHhhhccee
Confidence            47899999999999999999974     3457899999887532  23456888999999985     689999999987


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhc--------------------------------------------------
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSR--------------------------------------------------  136 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~--------------------------------------------------  136 (447)
                      ...   +...+++|||| +++|.+++....                                                  
T Consensus        81 ~~~---~~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (343)
T cd05103          81 TKP---GGPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKS  157 (343)
T ss_pred             ecC---CCceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCc
Confidence            643   35789999999 889988875421                                                  


Q ss_pred             ---------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCC
Q 013220          137 ---------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEG  201 (447)
Q Consensus       137 ---------------~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~  201 (447)
                                     ...++...+..++.|++.||+|||++ ||+||||||+||++.                       
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~i~H~dikp~Nil~~-----------------------  213 (343)
T cd05103         158 LSDVEEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLASR-KCIHRDLAARNILLS-----------------------  213 (343)
T ss_pred             cccchhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCccCeEEEc-----------------------
Confidence                           01256777888999999999999996 999999999999993                       


Q ss_pred             CCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc-----ccCCCC
Q 013220          202 SINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF-----AEEIQT  276 (447)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~-----~~~~gt  276 (447)
                                                                       ....++|+|||++.......     ....++
T Consensus       214 -------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~  244 (343)
T cd05103         214 -------------------------------------------------ENNVVKICDFGLARDIYKDPDYVRKGDARLP  244 (343)
T ss_pred             -------------------------------------------------CCCcEEEEecccccccccCcchhhcCCCCCC
Confidence                                                             35679999999986542211     112345


Q ss_pred             CCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcc
Q 013220          277 RQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  355 (447)
Q Consensus       277 ~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  355 (447)
                      ..|+|||.+.+..++.++|||||||++|+|++ |..||.....     .......+ . .+.                  
T Consensus       245 ~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~-----~~~~~~~~-~-~~~------------------  299 (343)
T cd05103         245 LKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI-----DEEFCRRL-K-EGT------------------  299 (343)
T ss_pred             cceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCccc-----cHHHHHHH-h-ccC------------------
Confidence            67999999988889999999999999999996 8999865421     11110000 0 000                  


Q ss_pred             cchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          356 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                           ....+...+..+.+++.+||+.||++|||+.++++|
T Consensus       300 ---------------------~~~~~~~~~~~~~~~~~~cl~~~p~~Rps~~eil~~  335 (343)
T cd05103         300 ---------------------RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  335 (343)
T ss_pred             ---------------------CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                                 001122234578899999999999999999999976

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=100.00  E-value=2.3e-34  Score=280.19  Aligned_cols=255  Identities=29%  Similarity=0.400  Sum_probs=196.8

Q ss_pred             ceEEEEeecccCceEEEEEEeC---CCCeEEEEEEechhH-----HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDT---RTSSYVALKIQKSAA-----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~---~~~~~vaiK~~~~~~-----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      +|++.+.||+|++|.||+|++.   .++..||+|+++...     .....+.+|+++++.+.     +|++|+++++.+.
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~-----~~~~i~~~~~~~~   75 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVR-----RCPFLVTLHYAFQ   75 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhcc-----CCcchhhhheeee
Confidence            4899999999999999999754   457889999886432     23456778999999885     6899999998886


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCc
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                      .    +...++||||+ +++|...+...  ..+++..++.++.|++.||+|||+. |++|+||+|+||++          
T Consensus        76 ~----~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~ql~~~l~~lH~~-~~~H~dl~p~nil~----------  138 (288)
T cd05583          76 T----DTKLHLILDYVNGGELFTHLYQR--EHFTESEVRVYIAEIVLALDHLHQL-GIIYRDIKLENILL----------  138 (288)
T ss_pred             c----CCEEEEEEecCCCCcHHHHHhhc--CCcCHHHHHHHHHHHHHHHHHHHHC-CeeccCCCHHHeEE----------
Confidence            4    46899999999 78888877543  3488999999999999999999996 99999999999999          


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                    +....++|+|||++....
T Consensus       139 --------------------------------------------------------------~~~~~~~l~dfg~~~~~~  156 (288)
T cd05583         139 --------------------------------------------------------------DSEGHVVLTDFGLSKEFL  156 (288)
T ss_pred             --------------------------------------------------------------CCCCCEEEEECccccccc
Confidence                                                                          335679999999886433


Q ss_pred             ccc----ccCCCCCCccChHHhhcCC--CCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          268 KQF----AEEIQTRQYRAPEVILRAG--YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       268 ~~~----~~~~gt~~y~aPE~l~~~~--~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                      ...    ....++..|+|||.+.+..  .+.++|+||||+++|+|++|..||.......   ..   ..+.+        
T Consensus       157 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~---~~---~~~~~--------  222 (288)
T cd05583         157 AEEEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQN---SQ---SEISR--------  222 (288)
T ss_pred             cccccccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCcccc---hH---HHHHH--------
Confidence            221    1235789999999987654  6789999999999999999999996432110   00   00000        


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCC---hHHHhcCcccccc
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT---AQQCLQHPWLSLR  418 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpt---a~elL~hp~f~~~  418 (447)
                                                    .+.......+...+..+.++|.+||+.||++|||   +.++|+||||+..
T Consensus       223 ------------------------------~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~t~~~~~~~l~~~~~~~~  272 (288)
T cd05583         223 ------------------------------RILKSKPPFPKTMSAEARDFIQKLLEKDPKKRLGANGADEIKNHPFFQGI  272 (288)
T ss_pred             ------------------------------HHHccCCCCCcccCHHHHHHHHHHhcCCHhhccCcchHHHHhcCcccccC
Confidence                                          0111112233445668899999999999999998   5677999999876


Q ss_pred             c
Q 013220          419 N  419 (447)
Q Consensus       419 ~  419 (447)
                      .
T Consensus       273 ~  273 (288)
T cd05583         273 D  273 (288)
T ss_pred             C
Confidence            4

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=1.2e-34  Score=283.79  Aligned_cols=248  Identities=21%  Similarity=0.294  Sum_probs=190.9

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCe--EEEEEEech--hHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSS--YVALKIQKS--AAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~--~vaiK~~~~--~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|++.+.||+|+||.||+|++..++.  .+++|.++.  .....+.+.+|++++.++.     +|+||+++++++... 
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~-----~hp~iv~~~~~~~~~-   75 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLG-----HHPNIINLLGACENR-   75 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhc-----CCCchhheEEEEccC-
Confidence            479999999999999999998876654  468887763  2233457888999998885     689999999988753 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhc--------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeE
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSR--------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL  176 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~--------------~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nil  176 (447)
                         ...+++|||+ +++|.+++....              ...+++..+..++.|++.||+|||++ ||+||||||+||+
T Consensus        76 ---~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~-~ivH~dlkp~Nil  151 (297)
T cd05089          76 ---GYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEK-QFIHRDLAARNVL  151 (297)
T ss_pred             ---CcceEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHC-CcccCcCCcceEE
Confidence               5799999999 789998885432              12478889999999999999999996 9999999999999


Q ss_pred             eeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCccccee
Q 013220          177 LVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCK  256 (447)
Q Consensus       177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  256 (447)
                      +                                                                        +.+..++
T Consensus       152 l------------------------------------------------------------------------~~~~~~k  159 (297)
T cd05089         152 V------------------------------------------------------------------------GENLASK  159 (297)
T ss_pred             E------------------------------------------------------------------------CCCCeEE
Confidence            9                                                                        3356789


Q ss_pred             EeecCcccccccccccC--CCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHH
Q 013220          257 VVDFGNACRANKQFAEE--IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMME  333 (447)
Q Consensus       257 L~Dfg~a~~~~~~~~~~--~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~  333 (447)
                      |+|||++..........  ..+..|+|||.+.+..++.++|||||||++|+|++ |..||...+      .......+  
T Consensus       160 l~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~------~~~~~~~~--  231 (297)
T cd05089         160 IADFGLSRGEEVYVKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMT------CAELYEKL--  231 (297)
T ss_pred             ECCcCCCccccceeccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC------HHHHHHHH--
Confidence            99999986433322222  22457999999988889999999999999999997 999996542      11111110  


Q ss_pred             HhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          334 LIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       334 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                       ...                                      .....+..++..+.+||.+||+.+|.+|||++++++.
T Consensus       232 -~~~--------------------------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~  271 (297)
T cd05089         232 -PQG--------------------------------------YRMEKPRNCDDEVYELMRQCWRDRPYERPPFAQISVQ  271 (297)
T ss_pred             -hcC--------------------------------------CCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence             000                                      0011223456688999999999999999999999765

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=1.8e-34  Score=313.02  Aligned_cols=249  Identities=23%  Similarity=0.339  Sum_probs=192.9

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh----HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA----AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~----~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|++.++||+|+||.||+|++..+++.||+|++...    ....+.+.+|+++++.+      .|+||+++++++..  
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L------~HPNIVkl~~v~~d--   73 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADL------IHPGIVPVYSICSD--   73 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhC------CCcCcCeEEEEEee--
Confidence            6899999999999999999999999999999987643    23345788899999999      78999999998874  


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhcc---------CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRY---------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTI  181 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~---------~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~  181 (447)
                        ++..+++|||+ |++|.+++.....         ..++...+..++.||+.||+|||++ ||+||||||+||++    
T Consensus        74 --~~~lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~-GIIHRDLKPeNILL----  146 (932)
T PRK13184         74 --GDPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSK-GVLHRDLKPDNILL----  146 (932)
T ss_pred             --CCEEEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHC-CccccCCchheEEE----
Confidence              36899999999 8899888754211         2245567788999999999999996 99999999999999    


Q ss_pred             CCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecC
Q 013220          182 DPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFG  261 (447)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg  261 (447)
                                                                                          +..+.++|+|||
T Consensus       147 --------------------------------------------------------------------d~dg~vKLiDFG  158 (932)
T PRK13184        147 --------------------------------------------------------------------GLFGEVVILDWG  158 (932)
T ss_pred             --------------------------------------------------------------------cCCCCEEEEecC
Confidence                                                                                345679999999


Q ss_pred             ccccccc---------------------ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCC
Q 013220          262 NACRANK---------------------QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQG  320 (447)
Q Consensus       262 ~a~~~~~---------------------~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~  320 (447)
                      ++.....                     .....+||+.|+|||.+.+..++.++|||||||++|+|++|..||...+...
T Consensus       159 LAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~k  238 (932)
T PRK13184        159 AAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKGRK  238 (932)
T ss_pred             cceecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcchhh
Confidence            9865410                     0112468999999999999899999999999999999999999997542110


Q ss_pred             CCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCC
Q 013220          321 FCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTP  400 (447)
Q Consensus       321 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP  400 (447)
                             +  .....-..|..                                    ..-...++..+.+++.+||+.||
T Consensus       239 -------i--~~~~~i~~P~~------------------------------------~~p~~~iP~~L~~LI~rcL~~DP  273 (932)
T PRK13184        239 -------I--SYRDVILSPIE------------------------------------VAPYREIPPFLSQIAMKALAVDP  273 (932)
T ss_pred             -------h--hhhhhccChhh------------------------------------ccccccCCHHHHHHHHHHccCCh
Confidence                   0  00000000000                                    00012345678899999999999


Q ss_pred             CCCCChHHHhcC
Q 013220          401 EKRPTAQQCLQH  412 (447)
Q Consensus       401 ~kRpta~elL~h  412 (447)
                      ++|++..+.|.+
T Consensus       274 ~kR~ss~eeLl~  285 (932)
T PRK13184        274 AERYSSVQELKQ  285 (932)
T ss_pred             hhCcCHHHHHHH
Confidence            999887666544

>PHA02882 putative serine/threonine kinase; Provisional

Probab=100.00  E-value=1.4e-34  Score=283.34  Aligned_cols=263  Identities=18%  Similarity=0.211  Sum_probs=185.6

Q ss_pred             cCccccCCceEEEEeecccCceEEEEEEeCCC---CeEEEEEEechhHHh--HH-H------HHHHHHHHHHhhcCCCCC
Q 013220           29 VGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRT---SSYVALKIQKSAAQF--AQ-A------ALHEIEVLSAVADGDPSN   96 (447)
Q Consensus        29 ~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~---~~~vaiK~~~~~~~~--~~-~------~~~E~~~l~~l~~~~~~~   96 (447)
                      ++++.+ ++|++.++||+|+||+||+|.+..+   +..+|+|+.......  .+ .      ...++..+..+.   ...
T Consensus         6 ~~~i~~-~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~---~~~   81 (294)
T PHA02882          6 LIDITG-KEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIH---NID   81 (294)
T ss_pred             eeccCC-CceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhc---cCC
Confidence            455554 7999999999999999999998777   678888864322210  00 0      011222222222   237


Q ss_pred             cceeeeecccccccCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeE
Q 013220           97 EKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL  176 (447)
Q Consensus        97 ~~~Iv~~~~~~~~~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nil  176 (447)
                      |++|++++++...........+++|+++...+.+.+...  ...++..+..++.|++.||+|||++ +|+||||||+|||
T Consensus        82 h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~-~iiHrDiKp~Nil  158 (294)
T PHA02882         82 HLGIPKYYGCGSFKRCRMYYRFILLEKLVENTKEIFKRI--KCKNKKLIKNIMKDMLTTLEYIHEH-GISHGDIKPENIM  158 (294)
T ss_pred             CCCCCcEEEeeeEecCCceEEEEEEehhccCHHHHHHhh--ccCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEE
Confidence            899999998765443233467889999877777666543  2357888999999999999999996 9999999999999


Q ss_pred             eeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCccccee
Q 013220          177 LVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCK  256 (447)
Q Consensus       177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  256 (447)
                      +                                                                        +....++
T Consensus       159 l------------------------------------------------------------------------~~~~~~~  166 (294)
T PHA02882        159 V------------------------------------------------------------------------DGNNRGY  166 (294)
T ss_pred             E------------------------------------------------------------------------cCCCcEE
Confidence            9                                                                        3356789


Q ss_pred             EeecCccccccc----------ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchH
Q 013220          257 VVDFGNACRANK----------QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDED  326 (447)
Q Consensus       257 L~Dfg~a~~~~~----------~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~  326 (447)
                      |+|||+|.....          ......||+.|+|||.+.+..++.++|||||||++|+|++|..||.......     .
T Consensus       167 l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~-----~  241 (294)
T PHA02882        167 IIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNG-----N  241 (294)
T ss_pred             EEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccch-----H
Confidence            999999864421          1122368999999999999899999999999999999999999997653111     1


Q ss_pred             HHHHH-HHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCC
Q 013220          327 HLALM-MELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT  405 (447)
Q Consensus       327 ~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpt  405 (447)
                      .+... .+.+.                                   .+..... .....+..+.+++..|+..+|++||+
T Consensus       242 ~~~~~~~~~~~-----------------------------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~rp~  285 (294)
T PHA02882        242 LIHAAKCDFIK-----------------------------------RLHEGKI-KIKNANKFIYDFIECVTKLSYEEKPD  285 (294)
T ss_pred             HHHHhHHHHHH-----------------------------------Hhhhhhh-ccCCCCHHHHHHHHHHHhCCCCCCCC
Confidence            11000 00000                                   0000000 11223568999999999999999999


Q ss_pred             hHHHhc
Q 013220          406 AQQCLQ  411 (447)
Q Consensus       406 a~elL~  411 (447)
                      .+++++
T Consensus       286 ~~~l~~  291 (294)
T PHA02882        286 YDALIK  291 (294)
T ss_pred             HHHHHH
Confidence            999875

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=1.4e-34  Score=295.29  Aligned_cols=249  Identities=20%  Similarity=0.316  Sum_probs=190.6

Q ss_pred             CCceEEEEeecccCceEEEEEEeCC-----CCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTR-----TSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~-----~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      .++|++.++||+|+||+||+|.+..     ++..||+|+++..  ....+.+.+|+++++.+.     .|+||+++++++
T Consensus        36 ~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~-----~HpnIv~l~~~~  110 (400)
T cd05105          36 RDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLG-----PHLNIVNLLGAC  110 (400)
T ss_pred             ccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcC-----CCCCeeeEEEEE
Confidence            4678899999999999999998643     3457999988643  233467889999999994     499999999998


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhc--------------------------------------------------
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSR--------------------------------------------------  136 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~--------------------------------------------------  136 (447)
                      ..    ....|+||||| +++|.+++....                                                  
T Consensus       111 ~~----~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (400)
T cd05105         111 TK----SGPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTT  186 (400)
T ss_pred             cc----CCceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhccccccccccccccc
Confidence            75    36899999999 889988764321                                                  


Q ss_pred             --------------------------------------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCC
Q 013220          137 --------------------------------------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKP  172 (447)
Q Consensus       137 --------------------------------------------~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp  172 (447)
                                                                  ...+++..+..++.|++.||+|||++ +|+|+||||
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~-~ivH~dikp  265 (400)
T cd05105         187 QYVPMLEIKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASK-NCVHRDLAA  265 (400)
T ss_pred             ccchhhhhhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhC-CeeCCCCCh
Confidence                                                        12367778889999999999999996 999999999


Q ss_pred             CCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcc
Q 013220          173 ENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGID  252 (447)
Q Consensus       173 ~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (447)
                      +||++.                                                                        ..
T Consensus       266 ~Nill~------------------------------------------------------------------------~~  273 (400)
T cd05105         266 RNVLLA------------------------------------------------------------------------QG  273 (400)
T ss_pred             HhEEEe------------------------------------------------------------------------CC
Confidence            999993                                                                        35


Q ss_pred             cceeEeecCcccccccc-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchH
Q 013220          253 MRCKVVDFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDED  326 (447)
Q Consensus       253 ~~~kL~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~  326 (447)
                      ..++|+|||++......     .....++..|+|||.+.+..++.++|||||||++|+|++ |..||.....     +..
T Consensus       274 ~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~-----~~~  348 (400)
T cd05105         274 KIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIV-----DST  348 (400)
T ss_pred             CEEEEEeCCcceeccccccccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccch-----hHH
Confidence            56999999998654321     112346678999999998889999999999999999996 8999865420     110


Q ss_pred             HHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCCh
Q 013220          327 HLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA  406 (447)
Q Consensus       327 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta  406 (447)
                      ....+ .  ..                                      .....+...+..+.+++.+||+.||++|||+
T Consensus       349 ~~~~~-~--~~--------------------------------------~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~  387 (400)
T cd05105         349 FYNKI-K--SG--------------------------------------YRMAKPDHATQEVYDIMVKCWNSEPEKRPSF  387 (400)
T ss_pred             HHHHH-h--cC--------------------------------------CCCCCCccCCHHHHHHHHHHCccCHhHCcCH
Confidence            00000 0  00                                      0011223456789999999999999999999


Q ss_pred             HHHhc
Q 013220          407 QQCLQ  411 (447)
Q Consensus       407 ~elL~  411 (447)
                      .++.+
T Consensus       388 ~~l~~  392 (400)
T cd05105         388 LHLSD  392 (400)
T ss_pred             HHHHH
Confidence            88865

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=2e-35  Score=298.98  Aligned_cols=258  Identities=26%  Similarity=0.416  Sum_probs=208.4

Q ss_pred             CCce-EEEEeecccCceEEEEEEeCCCCeEEEEEEech-----hHHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           35 GGRY-IAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKS-----AAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        35 ~~~y-~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~-----~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      .||| +..+.||+|+|-+||+|.|..+|..||--.++.     .+...+.+..|+++|+.|      .|+||+++|.+|.
T Consensus        38 ~gRy~k~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL------~H~NIirfy~SW~  111 (632)
T KOG0584|consen   38 TGRYLKFDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSL------KHPNIIRFYDSWV  111 (632)
T ss_pred             CCceeehhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccC------CCCceeeeeehee
Confidence            3566 678889999999999999999999988443332     234568899999999999      8999999999999


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhh-CCcccccCCCCCeEeeecCCCCCC
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRE-LGIIHTDLKPENILLVSTIDPSKD  186 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~-~gIiH~Dikp~Nill~~~~~~~~~  186 (447)
                      +.  ....+.+|.|.+ .|+|..+..+.+  .++.+.++.|++||+.||.|||++ --|||||||=+||+|+.       
T Consensus       112 d~--~n~~in~iTEL~TSGtLr~Y~kk~~--~vn~kaik~W~RQILkGL~yLHs~~PPIIHRDLKCDNIFinG-------  180 (632)
T KOG0584|consen  112 DT--DNKTINFITELFTSGTLREYRKKHR--RVNIKAIKSWCRQILKGLVYLHSQDPPIIHRDLKCDNIFVNG-------  180 (632)
T ss_pred             cC--CCceeeeeeecccCCcHHHHHHHhc--cCCHHHHHHHHHHHHHHhhhhhcCCCCccccccccceEEEcC-------
Confidence            87  457899999999 999998887654  499999999999999999999984 36999999999999943       


Q ss_pred             cccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccc
Q 013220          187 PIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA  266 (447)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~  266 (447)
                                                                                      ..+.||++|+|+|...
T Consensus       181 ----------------------------------------------------------------~~G~VKIGDLGLAtl~  196 (632)
T KOG0584|consen  181 ----------------------------------------------------------------NLGEVKIGDLGLATLL  196 (632)
T ss_pred             ----------------------------------------------------------------CcCceeecchhHHHHh
Confidence                                                                            2578999999999877


Q ss_pred             cccccc-CCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHh-CCCCHHhhh
Q 013220          267 NKQFAE-EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI-GKMPRKIAI  344 (447)
Q Consensus       267 ~~~~~~-~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~  344 (447)
                      ..+... .+|||.|||||++. ..|+..+||||||+.|++|+|+.|||..=        ....+..-+++ |.-|..+  
T Consensus       197 r~s~aksvIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmLEMvT~eYPYsEC--------~n~AQIYKKV~SGiKP~sl--  265 (632)
T KOG0584|consen  197 RKSHAKSVIGTPEFMAPEMYE-ENYNELVDVYAFGMCMLEMVTSEYPYSEC--------TNPAQIYKKVTSGIKPAAL--  265 (632)
T ss_pred             hccccceeccCccccChHHHh-hhcchhhhhhhhhHHHHHHHhccCChhhh--------CCHHHHHHHHHcCCCHHHh--
Confidence            665544 48999999999997 56999999999999999999999999632        22222222222 3333221  


Q ss_pred             CCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          345 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                                                          .+--.+++++||.+||.. ..+|+||.|+|.||||+.....
T Consensus       266 ------------------------------------~kV~dPevr~fIekCl~~-~~~R~sa~eLL~d~Ff~~d~g~  305 (632)
T KOG0584|consen  266 ------------------------------------SKVKDPEVREFIEKCLAT-KSERLSAKELLKDPFFDEDGGI  305 (632)
T ss_pred             ------------------------------------hccCCHHHHHHHHHHhcC-chhccCHHHHhhChhhcccccc
Confidence                                                111134889999999999 9999999999999999986543

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=100.00  E-value=1.2e-34  Score=283.49  Aligned_cols=249  Identities=27%  Similarity=0.457  Sum_probs=195.7

Q ss_pred             EEeecccCceEEEEEEeCCCCeEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEE
Q 013220           41 QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCM  119 (447)
Q Consensus        41 ~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~l  119 (447)
                      ..+||+|+||.||++....++..||+|.+.... .....+.+|+.+++.+      +|+||+++++.+..    ++..++
T Consensus        25 ~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~----~~~~~l   94 (292)
T cd06657          25 FIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDY------QHENVVEMYNSYLV----GDELWV   94 (292)
T ss_pred             HHHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhc------CCcchhheeeEEEe----CCEEEE
Confidence            357999999999999999999999999865432 2345688899999988      78999999998875    478999


Q ss_pred             EEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCC
Q 013220          120 VLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER  198 (447)
Q Consensus       120 vmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~  198 (447)
                      ||||+ +++|.+.+..   ..+++..+..++.|++.||+|||+. |++|+||+|.||++                     
T Consensus        95 v~e~~~~~~L~~~~~~---~~~~~~~~~~~~~ql~~~l~~lH~~-givH~dl~p~Nilv---------------------  149 (292)
T cd06657          95 VMEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLKALSVLHAQ-GVIHRDIKSDSILL---------------------  149 (292)
T ss_pred             EEecCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEE---------------------
Confidence            99999 7788776643   2478999999999999999999996 99999999999999                     


Q ss_pred             CCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---cccCCC
Q 013220          199 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEIQ  275 (447)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~~~~~g  275 (447)
                                                                         +.+..++|+|||.+......   .....+
T Consensus       150 ---------------------------------------------------~~~~~~~l~dfg~~~~~~~~~~~~~~~~~  178 (292)
T cd06657         150 ---------------------------------------------------THDGRVKLSDFGFCAQVSKEVPRRKSLVG  178 (292)
T ss_pred             ---------------------------------------------------CCCCCEEEcccccceeccccccccccccc
Confidence                                                               33567999999988644322   222467


Q ss_pred             CCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcc
Q 013220          276 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  355 (447)
Q Consensus       276 t~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  355 (447)
                      +..|+|||.+.+..++.++|+||+||++|+|++|..||...+      ....+..+..   ..+..              
T Consensus       179 ~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~------~~~~~~~~~~---~~~~~--------------  235 (292)
T cd06657         179 TPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP------PLKAMKMIRD---NLPPK--------------  235 (292)
T ss_pred             CccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHh---hCCcc--------------
Confidence            889999999988888999999999999999999999997542      1111111110   01100              


Q ss_pred             cchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccC
Q 013220          356 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~  420 (447)
                                            ......++..+.+++.+||+.||.+||++.++|+||||.....
T Consensus       236 ----------------------~~~~~~~~~~l~~li~~~l~~~P~~R~~~~~ll~~~~~~~~~~  278 (292)
T cd06657         236 ----------------------LKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAGP  278 (292)
T ss_pred             ----------------------cCCcccCCHHHHHHHHHHHhCCcccCcCHHHHhcChHHhccCC
Confidence                                  0011223557889999999999999999999999999997653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=100.00  E-value=1.3e-34  Score=276.49  Aligned_cols=245  Identities=23%  Similarity=0.347  Sum_probs=192.7

Q ss_pred             ccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           33 FNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        33 ~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++.+.|++.+.||+|+||.||++.  .+++.||+|.++.... .+.+.+|+.+++.+      +|+||+++++.+...  
T Consensus         3 ~~~~~~~~~~~lg~g~~g~v~~~~--~~~~~~~iK~~~~~~~-~~~~~~e~~~l~~~------~~~~i~~~~~~~~~~--   71 (254)
T cd05083           3 LNLQKLTLGEIIGEGEFGAVLQGE--YTGQKVAVKNIKCDVT-AQAFLEETAVMTKL------HHKNLVRLLGVILHN--   71 (254)
T ss_pred             ccHHHceeeeeeccCCCCceEecc--cCCCceEEEeecCcch-HHHHHHHHHHHHhC------CCCCcCeEEEEEcCC--
Confidence            344689999999999999999995  4678899998865433 46788999999998      789999999987642  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                         ..+++|||+ +++|.+.+.......+++..+..++.|++.||+|||+. |++||||||+||++.             
T Consensus        72 ---~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~~~H~dl~p~nili~-------------  134 (254)
T cd05083          72 ---GLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESK-KLVHRDLAARNILVS-------------  134 (254)
T ss_pred             ---CcEEEEECCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhC-CeeccccCcceEEEc-------------
Confidence               478999999 78999988654444578889999999999999999996 999999999999993             


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccc
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA  271 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~  271 (447)
                                                                                 ....++|+|||.+........
T Consensus       135 -----------------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~  155 (254)
T cd05083         135 -----------------------------------------------------------EDGVAKVSDFGLARVGSMGVD  155 (254)
T ss_pred             -----------------------------------------------------------CCCcEEECCCccceeccccCC
Confidence                                                                       356799999999875443333


Q ss_pred             cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          272 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       272 ~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      ....+..|+|||.+.+..++.++|+|||||++|+|++ |..||...+.       ........ .+.             
T Consensus       156 ~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~-------~~~~~~~~-~~~-------------  214 (254)
T cd05083         156 NSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSL-------KEVKECVE-KGY-------------  214 (254)
T ss_pred             CCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCH-------HHHHHHHh-CCC-------------
Confidence            3345678999999988889999999999999999997 9999965421       11111000 000             


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                ....+...+..+.+++.+||+.+|++||++++++.
T Consensus       215 --------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  249 (254)
T cd05083         215 --------------------------RMEPPEGCPADVYVLMTSCWETEPKKRPSFHKLRE  249 (254)
T ss_pred             --------------------------CCCCCCcCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                                      00112334678899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=100.00  E-value=2.5e-34  Score=275.67  Aligned_cols=245  Identities=24%  Similarity=0.394  Sum_probs=192.8

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      .++|++.++||+|+||.||+|.+. .+..+|+|.++......+.+.+|+++++.+      +|++|+++++.+..     
T Consensus         5 ~~~~~~~~~lg~g~~~~vy~~~~~-~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~-----   72 (260)
T cd05073           5 RESLKLEKKLGAGQFGEVWMATYN-KHTKVAVKTMKPGSMSVEAFLAEANVMKTL------QHDKLVKLHAVVTK-----   72 (260)
T ss_pred             ccceeEEeEecCccceEEEEEEec-CCccEEEEecCCChhHHHHHHHHHHHHHhc------CCCCcceEEEEEcC-----
Confidence            479999999999999999999754 456799998877665567888999999999      78899999988764     


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ...+++|||+ +++|.+++.......++...+..++.|++.||.|||++ |++|+||||+||++                
T Consensus        73 ~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~-~i~H~dl~p~ni~i----------------  135 (260)
T cd05073          73 EPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR-NYIHRDLRAANILV----------------  135 (260)
T ss_pred             CCeEEEEEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhC-CccccccCcceEEE----------------
Confidence            4689999999 78999888654444578888999999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc---
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF---  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~---  270 (447)
                                                                              +....++|+|||.+.......   
T Consensus       136 --------------------------------------------------------~~~~~~~l~d~~~~~~~~~~~~~~  159 (260)
T cd05073         136 --------------------------------------------------------SASLVCKIADFGLARVIEDNEYTA  159 (260)
T ss_pred             --------------------------------------------------------cCCCcEEECCCcceeeccCCCccc
Confidence                                                                    335679999999886543211   


Q ss_pred             -ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          271 -AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       271 -~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                       ....++..|+|||++....++.++|+|||||++|++++ |..||...+      .......+   .+..+         
T Consensus       160 ~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~------~~~~~~~~---~~~~~---------  221 (260)
T cd05073         160 REGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMS------NPEVIRAL---ERGYR---------  221 (260)
T ss_pred             ccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCC------HHHHHHHH---hCCCC---------
Confidence             12234567999999988888999999999999999998 999997542      11111111   00000         


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                   ...+...+.++.+++.+||+.+|++||++.++++
T Consensus       222 -----------------------------~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~  255 (260)
T cd05073         222 -----------------------------MPRPENCPEELYNIMMRCWKNRPEERPTFEYIQS  255 (260)
T ss_pred             -----------------------------CCCcccCCHHHHHHHHHHcccCcccCcCHHHHHH
Confidence                                         0112334568899999999999999999988864

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-35  Score=305.97  Aligned_cols=259  Identities=27%  Similarity=0.438  Sum_probs=220.0

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC-Cc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP-NG  114 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~-~~  114 (447)
                      +-|.+.+.||.|.+|.||++++..+++.+|||+...+....++...|.++|+.+.     +|+|++.++++|....+ .+
T Consensus        19 d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~deEiE~eynil~~~~-----~hpnv~~fyg~~~k~~~~~~   93 (953)
T KOG0587|consen   19 DIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDEEEEIELEYNMLKKYS-----HHPNVATFYGAFIKKDPGNG   93 (953)
T ss_pred             CccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCccccHHHHHHHHHHHhcc-----CCCCcceEEEEEEEecCCCC
Confidence            6799999999999999999999999999999998888877788899999999986     89999999999887665 45


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      +++||||||| ||+..++++......+.+..+..|++.++.|+.+||.+ .++|||||..|||++.              
T Consensus        94 DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~n-kviHRDikG~NiLLT~--------------  158 (953)
T KOG0587|consen   94 DQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNN-KVIHRDIKGQNVLLTE--------------  158 (953)
T ss_pred             CeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhc-ceeeecccCceEEEec--------------
Confidence            7999999999 89999999876666799999999999999999999997 9999999999999943              


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---c
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---F  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~  270 (447)
                                                                                ++.+||+|||.+...+..   .
T Consensus       159 ----------------------------------------------------------e~~VKLvDFGvSaQldsT~grR  180 (953)
T KOG0587|consen  159 ----------------------------------------------------------NAEVKLVDFGVSAQLDSTVGRR  180 (953)
T ss_pred             ----------------------------------------------------------cCcEEEeeeeeeeeeecccccc
Confidence                                                                      678999999999766644   3


Q ss_pred             ccCCCCCCccChHHhhc-----CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          271 AEEIQTRQYRAPEVILR-----AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~-----~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                      ...+||++|||||++.-     .-|+..+|+||||++..+|..|.+|+.+.         .-+.-++.+...+|..++  
T Consensus       181 nT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~Dm---------HPmraLF~IpRNPPPkLk--  249 (953)
T KOG0587|consen  181 NTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDM---------HPMRALFLIPRNPPPKLK--  249 (953)
T ss_pred             cCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCc---------chhhhhccCCCCCCcccc--
Confidence            44589999999999963     23678999999999999999999999643         334444444444443221  


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccc
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~  417 (447)
                                                        -+..=++.|.+||..||..|-++||+..++|.|||+++
T Consensus       250 ----------------------------------rp~kWs~~FndFIs~cL~Kd~e~RP~~~~ll~hpFi~e  287 (953)
T KOG0587|consen  250 ----------------------------------RPKKWSKKFNDFISTCLVKDYEQRPSTEELLKHPFITE  287 (953)
T ss_pred             ----------------------------------chhhHHHHHHHHHHHHHhhccccCcchhhhccCCcccc
Confidence                                              12334779999999999999999999999999999993

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=2.1e-34  Score=283.50  Aligned_cols=248  Identities=22%  Similarity=0.349  Sum_probs=191.1

Q ss_pred             CceEEEEeecccCceEEEEEEeCC-------CCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTR-------TSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDH  106 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~-------~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~  106 (447)
                      ++|.+.++||+|+||.||+|++..       +...+|+|.++..  ......+.+|+++++.+.     .|+||++++++
T Consensus        18 ~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~-----~h~~i~~~~~~   92 (307)
T cd05098          18 DRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIG-----KHKNIINLLGA   92 (307)
T ss_pred             HHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhc-----CCCCEeeEEEE
Confidence            789999999999999999997643       2357999988753  233456888999999885     68999999998


Q ss_pred             ccccCCCcceEEEEEecc-cccHHHHHHhhcc--------------CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCC
Q 013220          107 FKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRY--------------KGLELNKVREICKYILTGLDYLHRELGIIHTDLK  171 (447)
Q Consensus       107 ~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~--------------~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dik  171 (447)
                      +...    ...|+||||+ +++|.+++.....              ..++...++.++.|++.||+|||+. |++|||||
T Consensus        93 ~~~~----~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~-gi~H~dlk  167 (307)
T cd05098          93 CTQD----GPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASK-KCIHRDLA  167 (307)
T ss_pred             EecC----CceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHC-Cccccccc
Confidence            8753    6799999999 7899998865321              2377888999999999999999996 99999999


Q ss_pred             CCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCc
Q 013220          172 PENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGI  251 (447)
Q Consensus       172 p~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (447)
                      |+||++.                                                                        .
T Consensus       168 p~Nill~------------------------------------------------------------------------~  175 (307)
T cd05098         168 ARNVLVT------------------------------------------------------------------------E  175 (307)
T ss_pred             HHheEEc------------------------------------------------------------------------C
Confidence            9999993                                                                        3


Q ss_pred             ccceeEeecCccccccccc-----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCch
Q 013220          252 DMRCKVVDFGNACRANKQF-----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDE  325 (447)
Q Consensus       252 ~~~~kL~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~  325 (447)
                      +..++|+|||.+.......     ....++..|+|||.+.+..++.++|+|||||++|+|++ |..||...+       .
T Consensus       176 ~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~~-------~  248 (307)
T cd05098         176 DNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP-------V  248 (307)
T ss_pred             CCcEEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcCC-------H
Confidence            5679999999986543211     11123468999999988889999999999999999998 888885432       1


Q ss_pred             HHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCC
Q 013220          326 DHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT  405 (447)
Q Consensus       326 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpt  405 (447)
                      ..+.....   ..                                     .....+...+.++.+||.+||+.+|++|||
T Consensus       249 ~~~~~~~~---~~-------------------------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps  288 (307)
T cd05098         249 EELFKLLK---EG-------------------------------------HRMDKPSNCTNELYMMMRDCWHAVPSQRPT  288 (307)
T ss_pred             HHHHHHHH---cC-------------------------------------CCCCCCCcCCHHHHHHHHHHcccChhhCcC
Confidence            11111110   00                                     001123344668899999999999999999


Q ss_pred             hHHHhcC
Q 013220          406 AQQCLQH  412 (447)
Q Consensus       406 a~elL~h  412 (447)
                      +.+++++
T Consensus       289 ~~evl~~  295 (307)
T cd05098         289 FKQLVED  295 (307)
T ss_pred             HHHHHHH
Confidence            9999865

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-35  Score=297.22  Aligned_cols=245  Identities=25%  Similarity=0.415  Sum_probs=192.1

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      +...+.++||+|+||+||+|++-   ..||||++..+   ....+.|.+|+.+++..      .|.||+=+++++...  
T Consensus       392 ~ev~l~~rIGsGsFGtV~Rg~wh---GdVAVK~Lnv~~pt~~qlqaFKnEVa~lkkT------RH~NIlLFMG~~~~p--  460 (678)
T KOG0193|consen  392 EEVLLGERIGSGSFGTVYRGRWH---GDVAVKLLNVDDPTPEQLQAFKNEVAVLKKT------RHENILLFMGACMNP--  460 (678)
T ss_pred             HHhhccceeccccccceeecccc---cceEEEEEecCCCCHHHHHHHHHHHHHHhhc------chhhheeeehhhcCC--
Confidence            34678899999999999999874   46999988754   34578999999999999      788999999999864  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                         .+.||..+| |.+|+.++.-.+ ..|++.+++.|++|++.|+.|||.+ +|||||+|..||++              
T Consensus       461 ---~~AIiTqwCeGsSLY~hlHv~e-tkfdm~~~idIAqQiaqGM~YLHAK-~IIHrDLKSnNIFl--------------  521 (678)
T KOG0193|consen  461 ---PLAIITQWCEGSSLYTHLHVQE-TKFDMNTTIDIAQQIAQGMDYLHAK-NIIHRDLKSNNIFL--------------  521 (678)
T ss_pred             ---ceeeeehhccCchhhhhccchh-hhhhHHHHHHHHHHHHHhhhhhhhh-hhhhhhccccceEE--------------
Confidence               459999999 778888774332 4589999999999999999999998 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc----
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN----  267 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~----  267 (447)
                                                                                ..+..|||+|||++....    
T Consensus       522 ----------------------------------------------------------~~~~kVkIgDFGLatvk~~w~g  543 (678)
T KOG0193|consen  522 ----------------------------------------------------------HEDLKVKIGDFGLATVKTRWSG  543 (678)
T ss_pred             ----------------------------------------------------------ccCCcEEEecccceeeeeeecc
Confidence                                                                      446889999999985322    


Q ss_pred             -cccccCCCCCCccChHHhhc---CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhh
Q 013220          268 -KQFAEEIQTRQYRAPEVILR---AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  343 (447)
Q Consensus       268 -~~~~~~~gt~~y~aPE~l~~---~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  343 (447)
                       +......|..-|+|||++..   .+|++.+|+||||||+|||++|.+||.......      .+   +. .|..     
T Consensus       544 ~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi~~~dq------Ii---fm-VGrG-----  608 (678)
T KOG0193|consen  544 EQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSIQNRDQ------II---FM-VGRG-----  608 (678)
T ss_pred             ccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCCCChhh------eE---EE-eccc-----
Confidence             23333456788999999974   479999999999999999999999997432111      00   00 0000     


Q ss_pred             hCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          344 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                         .-                     ..+    ......+.+.++.+|+..||.+++++||++.+||.
T Consensus       609 ---~l---------------------~pd----~s~~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~  648 (678)
T KOG0193|consen  609 ---YL---------------------MPD----LSKIRSNCPKAMKRLLSDCWKFDREERPLFPQLLS  648 (678)
T ss_pred             ---cc---------------------Ccc----chhhhccCHHHHHHHHHHHHhcCcccCccHHHHHH
Confidence               00                     000    00123455779999999999999999999999986

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=1.7e-34  Score=281.86  Aligned_cols=247  Identities=21%  Similarity=0.372  Sum_probs=192.5

Q ss_pred             CCceEEEEeecccCceEEEEEEeC-----CCCeEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDT-----RTSSYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~-----~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      .++|.+.+.||.|+||.||+|.+.     .++..+++|.++... ...+.+.+|+++++.+      .|+||+++++++.
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~   77 (291)
T cd05094           4 RRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNL------QHEHIVKFYGVCG   77 (291)
T ss_pred             hHHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcC------CCCCcceEEEEEc
Confidence            467999999999999999999753     345678999876543 3345788999999998      7899999999887


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhcc--------------CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCC
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSRY--------------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPE  173 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~--------------~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~  173 (447)
                      .    ....++||||+ +++|.+++.....              ..+++..+..++.|++.||+|||++ ||+||||||+
T Consensus        78 ~----~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~-~i~H~dlkp~  152 (291)
T cd05094          78 D----GDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQ-HFVHRDLATR  152 (291)
T ss_pred             c----CCceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhC-CeeecccCcc
Confidence            4    46799999999 8899998864321              2378889999999999999999997 9999999999


Q ss_pred             CeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCccc
Q 013220          174 NILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDM  253 (447)
Q Consensus       174 Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (447)
                      ||++                                                                        +.+.
T Consensus       153 Nil~------------------------------------------------------------------------~~~~  160 (291)
T cd05094         153 NCLV------------------------------------------------------------------------GANL  160 (291)
T ss_pred             eEEE------------------------------------------------------------------------ccCC
Confidence            9999                                                                        3456


Q ss_pred             ceeEeecCcccccccc-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHH
Q 013220          254 RCKVVDFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDH  327 (447)
Q Consensus       254 ~~kL~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~  327 (447)
                      .++|+|||.+......     .....++..|+|||.+.+..++.++|||||||++|+|++ |..||...+      ....
T Consensus       161 ~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~------~~~~  234 (291)
T cd05094         161 LVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLS------NTEV  234 (291)
T ss_pred             cEEECCCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC------HHHH
Confidence            7999999998654322     122346788999999998889999999999999999998 999986542      1111


Q ss_pred             HHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChH
Q 013220          328 LALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQ  407 (447)
Q Consensus       328 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~  407 (447)
                      +..+..  +..+                                       ..+...+..+.+++.+||+.||++|||+.
T Consensus       235 ~~~~~~--~~~~---------------------------------------~~~~~~~~~~~~li~~~l~~~P~~Rpt~~  273 (291)
T cd05094         235 IECITQ--GRVL---------------------------------------ERPRVCPKEVYDIMLGCWQREPQQRLNIK  273 (291)
T ss_pred             HHHHhC--CCCC---------------------------------------CCCccCCHHHHHHHHHHcccChhhCcCHH
Confidence            111000  0000                                       01122356788999999999999999999


Q ss_pred             HHhc
Q 013220          408 QCLQ  411 (447)
Q Consensus       408 elL~  411 (447)
                      ++++
T Consensus       274 ~v~~  277 (291)
T cd05094         274 EIYK  277 (291)
T ss_pred             HHHH
Confidence            9974

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=3.6e-34  Score=275.35  Aligned_cols=246  Identities=20%  Similarity=0.331  Sum_probs=192.0

Q ss_pred             CceEEEEeecccCceEEEEEEeCCC---CeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRT---SSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~---~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      ++|++.+.||+|+||+||+|.+..+   ...||+|.++..  ......+.+|+.+++.+      +|+||+++++.+.. 
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~-   76 (266)
T cd05033           4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQF------DHPNIIRLEGVVTK-   76 (266)
T ss_pred             HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhC------CCCCcceEeEEEec-
Confidence            5799999999999999999987644   468999987643  23345788899999999      78999999998864 


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                         +...+++|||+ +++|.+.+.... ..++...+..++.|++.||+|||+. +|+|+||||+||++            
T Consensus        77 ---~~~~~iv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~Lh~~-~i~H~di~p~nili------------  139 (266)
T cd05033          77 ---SRPVMIITEYMENGSLDKFLREND-GKFTVGQLVGMLRGIASGMKYLSEM-NYVHRDLAARNILV------------  139 (266)
T ss_pred             ---CCceEEEEEcCCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCcceEEE------------
Confidence               36799999999 889988876533 3588999999999999999999996 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                  +....++|+|||.+......
T Consensus       140 ------------------------------------------------------------~~~~~~~l~dfg~~~~~~~~  159 (266)
T cd05033         140 ------------------------------------------------------------NSNLVCKVSDFGLSRRLEDS  159 (266)
T ss_pred             ------------------------------------------------------------cCCCCEEECccchhhccccc
Confidence                                                                        33567999999999765421


Q ss_pred             cc-----cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhh
Q 013220          270 FA-----EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  343 (447)
Q Consensus       270 ~~-----~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  343 (447)
                      ..     ...++..|+|||.+.+..++.++|+|||||++|+|++ |..||...+      .......+.+   ..     
T Consensus       160 ~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~------~~~~~~~~~~---~~-----  225 (266)
T cd05033         160 EATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMS------NQDVIKAVED---GY-----  225 (266)
T ss_pred             ccceeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCC------HHHHHHHHHc---CC-----
Confidence            11     1133568999999998889999999999999999997 999986442      1111111100   00     


Q ss_pred             hCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          344 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                       ....+...+..+.+|+.+||+.+|++||++++++++
T Consensus       226 ---------------------------------~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~  261 (266)
T cd05033         226 ---------------------------------RLPPPMDCPSALYQLMLDCWQKDRNERPTFSQIVST  261 (266)
T ss_pred             ---------------------------------CCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence                                             001122346688999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.5e-34  Score=276.63  Aligned_cols=249  Identities=23%  Similarity=0.287  Sum_probs=189.8

Q ss_pred             eEEEEeecccCceEEEEEEeCC---CCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           38 YIAQRKLGWGQFSIVWLAYDTR---TSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        38 y~l~~~lG~G~~g~Vy~a~~~~---~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      |++.+.||+|+||.||+|....   ++..||+|.++...   .....+.+|+++++.+      +|+||+++++.+....
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~~~   74 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDF------DHPNVMKLIGVCFEAS   74 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhC------CCCCeeeEEeeeccCC
Confidence            5788999999999999998654   34789999877542   2345788899999998      7899999998776432


Q ss_pred             C--CcceEEEEEecc-cccHHHHHHhhc----cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCC
Q 013220          112 P--NGQHLCMVLEFL-GDSLLRLIKYSR----YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       112 ~--~~~~~~lvmE~~-~~~L~~~~~~~~----~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~  184 (447)
                      .  .....+++|||+ +++|...+....    ...+++..+..++.|++.||+|||++ +++||||||+||++       
T Consensus        75 ~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~-~i~H~dlkp~Nil~-------  146 (273)
T cd05035          75 SLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNR-NFIHRDLAARNCML-------  146 (273)
T ss_pred             ccccCcccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhC-CeeccccchheEEE-------
Confidence            1  123589999999 888887774432    13478899999999999999999996 99999999999999       


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                       +....++|+|||.+.
T Consensus       147 -----------------------------------------------------------------~~~~~~kl~dfg~~~  161 (273)
T cd05035         147 -----------------------------------------------------------------REDMTVCVADFGLSK  161 (273)
T ss_pred             -----------------------------------------------------------------CCCCeEEECCcccee
Confidence                                                                             335679999999987


Q ss_pred             ccccccc-----cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCC
Q 013220          265 RANKQFA-----EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKM  338 (447)
Q Consensus       265 ~~~~~~~-----~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~  338 (447)
                      .......     ...++..|+|||.+.+..++.++|||||||++|+|++ |..||.+..      .....   ..+....
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~------~~~~~---~~~~~~~  232 (273)
T cd05035         162 KIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVE------NHEIY---DYLRHGN  232 (273)
T ss_pred             eccccccccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCC------HHHHH---HHHHcCC
Confidence            5433221     1234568999999988889999999999999999998 888886542      11111   1110000


Q ss_pred             CHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          339 PRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                            ....+...+..+.+++.+||+.||.+|||+.+++++
T Consensus       233 --------------------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~  268 (273)
T cd05035         233 --------------------------------------RLKQPEDCLDELYDLMYSCWRADPKDRPTFTKLREV  268 (273)
T ss_pred             --------------------------------------CCCCCcCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                                                  011233456689999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=3.2e-34  Score=278.31  Aligned_cols=248  Identities=22%  Similarity=0.320  Sum_probs=187.9

Q ss_pred             cccCCceEEEEeecccCceEEEEEEeCCCCe----EEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecc
Q 013220           32 LFNGGRYIAQRKLGWGQFSIVWLAYDTRTSS----YVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLID  105 (447)
Q Consensus        32 ~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~----~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~  105 (447)
                      ++..++|++.+.||.|+||+||+|.+..++.    .+++|.+....  .....+..|+.+++.+      .|+||+++++
T Consensus         3 ~~~~~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l------~h~~iv~~~~   76 (279)
T cd05111           3 ILKETELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSL------DHAYIVRLLG   76 (279)
T ss_pred             cCCHhhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcC------CCCCcceEEE
Confidence            4555789999999999999999999876665    46777664322  2234566677777766      8899999999


Q ss_pred             cccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCC
Q 013220          106 HFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       106 ~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~  184 (447)
                      ++..     ...+++|||+ +++|.+.+.... ..+++..+..++.|++.||+|||++ |++|+||||+||++       
T Consensus        77 ~~~~-----~~~~~i~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~-~iiH~dlkp~nili-------  142 (279)
T cd05111          77 ICPG-----ASLQLVTQLSPLGSLLDHVRQHR-DSLDPQRLLNWCVQIAKGMYYLEEH-RMVHRNLAARNILL-------  142 (279)
T ss_pred             EECC-----CccEEEEEeCCCCcHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHC-CEeccccCcceEEE-------
Confidence            8642     4578899999 889999886433 4588999999999999999999996 99999999999999       


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                       +....++|+|||.+.
T Consensus       143 -----------------------------------------------------------------~~~~~~kl~Dfg~~~  157 (279)
T cd05111         143 -----------------------------------------------------------------KSDSIVQIADFGVAD  157 (279)
T ss_pred             -----------------------------------------------------------------cCCCcEEEcCCccce
Confidence                                                                             335679999999986


Q ss_pred             ccccc-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCC
Q 013220          265 RANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKM  338 (447)
Q Consensus       265 ~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~  338 (447)
                      .....     .....++..|+|||.+.+..++.++|||||||++|++++ |..||.+..       ...+..+.+. +..
T Consensus       158 ~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~-------~~~~~~~~~~-~~~  229 (279)
T cd05111         158 LLYPDDKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMR-------PHEVPDLLEK-GER  229 (279)
T ss_pred             eccCCCcccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCC-------HHHHHHHHHC-CCc
Confidence            54221     112245678999999988889999999999999999998 999996542       1111111110 000


Q ss_pred             CHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          339 PRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                             ...+...+..+.+++.+||..||++|||+.|+++
T Consensus       230 ---------------------------------------~~~~~~~~~~~~~li~~c~~~~p~~Rps~~el~~  263 (279)
T cd05111         230 ---------------------------------------LAQPQICTIDVYMVMVKCWMIDENVRPTFKELAN  263 (279)
T ss_pred             ---------------------------------------CCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence                                                   0011122446788999999999999999999876

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-35  Score=295.60  Aligned_cols=234  Identities=26%  Similarity=0.376  Sum_probs=193.1

Q ss_pred             EEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEE
Q 013220           41 QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMV  120 (447)
Q Consensus        41 ~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lv  120 (447)
                      ++.||+|+.|.||+|+.  .++.||||..+.      .-..+|+=|+.|      .|+||+++.+++..+    ..+|||
T Consensus       129 LeWlGSGaQGAVF~Grl--~netVAVKKV~e------lkETdIKHLRkL------kH~NII~FkGVCtqs----PcyCIi  190 (904)
T KOG4721|consen  129 LEWLGSGAQGAVFLGRL--HNETVAVKKVRE------LKETDIKHLRKL------KHPNIITFKGVCTQS----PCYCII  190 (904)
T ss_pred             hhhhccCcccceeeeec--cCceehhHHHhh------hhhhhHHHHHhc------cCcceeeEeeeecCC----ceeEEe
Confidence            56799999999999965  578999994332      223467778888      899999999999865    799999


Q ss_pred             Eecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCCC
Q 013220          121 LEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERP  199 (447)
Q Consensus       121 mE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~  199 (447)
                      |||| .|-|+.+++.++  .+.......|..+|+.|+.|||.+ .|||||||.-||||+.                    
T Consensus       191 MEfCa~GqL~~VLka~~--~itp~llv~Wsk~IA~GM~YLH~h-KIIHRDLKSPNiLIs~--------------------  247 (904)
T KOG4721|consen  191 MEFCAQGQLYEVLKAGR--PITPSLLVDWSKGIAGGMNYLHLH-KIIHRDLKSPNILISY--------------------  247 (904)
T ss_pred             eeccccccHHHHHhccC--ccCHHHHHHHHHHhhhhhHHHHHh-hHhhhccCCCceEeec--------------------
Confidence            9999 888999998764  488999999999999999999997 9999999999999955                    


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccc--cCCCCC
Q 013220          200 EGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA--EEIQTR  277 (447)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~--~~~gt~  277 (447)
                                                                          +..+|++|||.++.....-+  .++||.
T Consensus       248 ----------------------------------------------------~d~VKIsDFGTS~e~~~~STkMSFaGTV  275 (904)
T KOG4721|consen  248 ----------------------------------------------------DDVVKISDFGTSKELSDKSTKMSFAGTV  275 (904)
T ss_pred             ----------------------------------------------------cceEEeccccchHhhhhhhhhhhhhhhH
Confidence                                                                45699999999976554333  468999


Q ss_pred             CccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccc
Q 013220          278 QYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG  357 (447)
Q Consensus       278 ~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  357 (447)
                      .|||||+|...+.+.|+||||||||||+|+||..||.+-+..++         |.   |-...                 
T Consensus       276 aWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdssAI---------Iw---GVGsN-----------------  326 (904)
T KOG4721|consen  276 AWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSSAI---------IW---GVGSN-----------------  326 (904)
T ss_pred             hhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccchhee---------EE---eccCC-----------------
Confidence            99999999999999999999999999999999999976642221         11   00000                 


Q ss_pred             hhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCc
Q 013220          358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP  413 (447)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp  413 (447)
                                       .-....|...++.|.-||+.||.-.|..||++.|+|.|-
T Consensus       327 -----------------sL~LpvPstcP~GfklL~Kqcw~sKpRNRPSFrqil~Hl  365 (904)
T KOG4721|consen  327 -----------------SLHLPVPSTCPDGFKLLLKQCWNSKPRNRPSFRQILLHL  365 (904)
T ss_pred             -----------------cccccCcccCchHHHHHHHHHHhcCCCCCccHHHHHHHH
Confidence                             001247788899999999999999999999999999984

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=3e-34  Score=280.03  Aligned_cols=254  Identities=21%  Similarity=0.311  Sum_probs=192.7

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCC----------------eEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTS----------------SYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSN   96 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~----------------~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~   96 (447)
                      .++|++.++||+|+||.||+|++...+                ..||+|.+....  .....+.+|+++++.+      .
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l------~   77 (296)
T cd05051           4 RQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRL------S   77 (296)
T ss_pred             hhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhc------C
Confidence            368999999999999999999876533                568999876543  3456788999999999      7


Q ss_pred             cceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhc---------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcc
Q 013220           97 EKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSR---------YKGLELNKVREICKYILTGLDYLHRELGII  166 (447)
Q Consensus        97 ~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~---------~~~l~~~~~~~i~~qil~aL~~lH~~~gIi  166 (447)
                      |+||+++++++...    ...+++|||+ +++|.+++....         ...+++..+..++.|++.||+|||++ ||+
T Consensus        78 ~~~i~~~~~~~~~~----~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~-~i~  152 (296)
T cd05051          78 DPNIARLLGVCTVD----PPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESL-NFV  152 (296)
T ss_pred             CCCEeEEEEEEecC----CCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHc-Ccc
Confidence            89999999988753    6899999999 788988876533         12478999999999999999999996 999


Q ss_pred             cccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCc
Q 013220          167 HTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPER  246 (447)
Q Consensus       167 H~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (447)
                      |+||||+||++.                                                                    
T Consensus       153 H~dlkp~Nili~--------------------------------------------------------------------  164 (296)
T cd05051         153 HRDLATRNCLVG--------------------------------------------------------------------  164 (296)
T ss_pred             ccccchhceeec--------------------------------------------------------------------
Confidence            999999999993                                                                    


Q ss_pred             cCCCcccceeEeecCcccccccc-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh--CCCCCCCCCCC
Q 013220          247 CLDGIDMRCKVVDFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT--GDMLFAPKSGQ  319 (447)
Q Consensus       247 ~~~~~~~~~kL~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~--g~~Pf~~~~~~  319 (447)
                          ....++|+|||.+......     .....++..|+|||.+.+..++.++|||||||++|+|++  +..||...+  
T Consensus       165 ----~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~--  238 (296)
T cd05051         165 ----KNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLT--  238 (296)
T ss_pred             ----CCCceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCcC--
Confidence                3567999999998653322     112245678999999988889999999999999999987  677775432  


Q ss_pred             CCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccC
Q 013220          320 GFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFT  399 (447)
Q Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~d  399 (447)
                          ....+............                                  ......+...+.++.+++.+||+.|
T Consensus       239 ----~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~l~~li~~cl~~~  280 (296)
T cd05051         239 ----DQQVIENAGHFFRDDGR----------------------------------QIYLPRPPNCPKDIYELMLECWRRD  280 (296)
T ss_pred             ----hHHHHHHHHhccccccc----------------------------------cccCCCccCCCHHHHHHHHHHhccC
Confidence                12222221111000000                                  0000112234568999999999999


Q ss_pred             CCCCCChHHHhc
Q 013220          400 PEKRPTAQQCLQ  411 (447)
Q Consensus       400 P~kRpta~elL~  411 (447)
                      |++|||+.++++
T Consensus       281 p~~Rpt~~el~~  292 (296)
T cd05051         281 EEDRPTFREIHL  292 (296)
T ss_pred             hhcCCCHHHHHH
Confidence            999999999964

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=5.5e-34  Score=276.75  Aligned_cols=262  Identities=23%  Similarity=0.309  Sum_probs=193.5

Q ss_pred             CCceEEEEeecccCceEEEEEE----eCCCCeEEEEEEechh-HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAY----DTRTSSYVALKIQKSA-AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~----~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      ..+|++.+.||+|+||+||+|.    +..++..||+|.++.. ....+.+.+|+++++.+      .|+||+++++++..
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~   76 (284)
T cd05081           3 ERHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSL------QHDNIVKYKGVCYS   76 (284)
T ss_pred             cccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhC------CCCCeeEEEEEEcc
Confidence            3579999999999999999997    4457889999987644 33356788999999999      78999999997654


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                      .  +...+++||||+ +++|.+++.... ..+++..+..++.|++.||+|||++ ||+||||||+||++           
T Consensus        77 ~--~~~~~~lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~~l~~aL~~LH~~-~i~H~dlkp~nili-----------  141 (284)
T cd05081          77 A--GRRNLRLVMEYLPYGSLRDYLQKHR-ERLDHRKLLLYASQICKGMEYLGSK-RYVHRDLATRNILV-----------  141 (284)
T ss_pred             C--CCCceEEEEEecCCCCHHHHHHhcC-cCCCHHHHHHHHHHHHHHHHHHHHC-CceeccCCHhhEEE-----------
Confidence            3  345799999999 889998886432 3478899999999999999999996 99999999999999           


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                   +....++|+|||++.....
T Consensus       142 -------------------------------------------------------------~~~~~~~l~dfg~~~~~~~  160 (284)
T cd05081         142 -------------------------------------------------------------ESENRVKIGDFGLTKVLPQ  160 (284)
T ss_pred             -------------------------------------------------------------CCCCeEEECCCcccccccC
Confidence                                                                         3356799999999875433


Q ss_pred             ccc------cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh
Q 013220          269 QFA------EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  342 (447)
Q Consensus       269 ~~~------~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (447)
                      ...      ...++..|+|||.+.+..++.++|||||||++|+|++|..|+.....           ...+..+......
T Consensus       161 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~-----------~~~~~~~~~~~~~  229 (284)
T cd05081         161 DKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPA-----------EFMRMMGNDKQGQ  229 (284)
T ss_pred             CCcceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcch-----------hhhhhcccccccc
Confidence            211      11234569999999888899999999999999999998877643320           0011111100000


Q ss_pred             hhCCCCccchhcccchhhhhhhcccCchhHHhhh--hcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVD--KYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                              ..              ...+...+..  ....+...+..+.+||.+||..+|++|||+.++++
T Consensus       230 --------~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~  278 (284)
T cd05081         230 --------MI--------------VYHLIELLKNNGRLPAPPGCPAEIYAIMKECWNNDPSQRPSFSELAL  278 (284)
T ss_pred             --------cc--------------hHHHHHHHhcCCcCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence                    00              0000001111  11123345678999999999999999999999976

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=3.2e-34  Score=274.48  Aligned_cols=236  Identities=20%  Similarity=0.342  Sum_probs=184.1

Q ss_pred             eecccCceEEEEEEe--CCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceE
Q 013220           43 KLGWGQFSIVWLAYD--TRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHL  117 (447)
Q Consensus        43 ~lG~G~~g~Vy~a~~--~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~  117 (447)
                      +||+|+||.||+|.+  ..++..+|+|+++..   ....+.+.+|+.+++.+      .|+||+++++.+..     +..
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~-----~~~   70 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQL------DNPYIVRMIGICEA-----ESW   70 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhC------CCCCcceEEEEEcC-----CCc
Confidence            689999999999964  456889999987643   23456788899999998      78999999987642     467


Q ss_pred             EEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCc
Q 013220          118 CMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL  196 (447)
Q Consensus       118 ~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~  196 (447)
                      ++||||+ +++|.+++...  ..+++..+..++.|++.||+|||++ ||+||||||.||++                   
T Consensus        71 ~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~al~~lH~~-~i~H~dlkp~nill-------------------  128 (257)
T cd05116          71 MLVMELAELGPLNKFLQKN--KHVTEKNITELVHQVSMGMKYLEET-NFVHRDLAARNVLL-------------------  128 (257)
T ss_pred             EEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CEeecccchhhEEE-------------------
Confidence            8999999 78898888643  3488999999999999999999996 99999999999999                   


Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc------
Q 013220          197 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF------  270 (447)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~------  270 (447)
                                                                           +....++|+|||.+.......      
T Consensus       129 -----------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~~~~~  155 (257)
T cd05116         129 -----------------------------------------------------VTQHYAKISDFGLSKALGADENYYKAK  155 (257)
T ss_pred             -----------------------------------------------------cCCCeEEECCCccccccCCCCCeeeec
Confidence                                                                 335679999999986544321      


Q ss_pred             ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      ....++..|+|||.+....++.++|+|||||++|+|++ |..||....      .......+.+  +             
T Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~------~~~~~~~i~~--~-------------  214 (257)
T cd05116         156 THGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMK------GNEVTQMIES--G-------------  214 (257)
T ss_pred             CCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHC--C-------------
Confidence            11233578999999988888999999999999999997 999996542      1111111100  0             


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                ..+..+...+..+.+||.+||+.||++||+++++..
T Consensus       215 --------------------------~~~~~~~~~~~~l~~li~~~~~~~p~~Rp~~~~i~~  250 (257)
T cd05116         215 --------------------------ERMECPQRCPPEMYDLMKLCWTYGVDERPGFAVVEL  250 (257)
T ss_pred             --------------------------CCCCCCCCCCHHHHHHHHHHhccCchhCcCHHHHHH
Confidence                                      011233345678999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1e-35  Score=287.07  Aligned_cols=271  Identities=24%  Similarity=0.342  Sum_probs=222.6

Q ss_pred             CccccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH----hHHHHHHHHHHHHHhhcCCCCCcc
Q 013220           23 GYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ----FAQAALHEIEVLSAVADGDPSNEK   98 (447)
Q Consensus        23 ~~~~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~----~~~~~~~E~~~l~~l~~~~~~~~~   98 (447)
                      .+|+..--+++....|.++..||+|+||.|-+|..+.+.+.||||+++++..    ..+-...|-++|....     .-|
T Consensus       336 ~~~~~~~~d~i~~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~-----kpp  410 (683)
T KOG0696|consen  336 KFHNSSKRDRIKATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPG-----KPP  410 (683)
T ss_pred             cCCCCCcccceeecccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCC-----CCc
Confidence            3444444455556789999999999999999999999999999999987752    3445566777877765     456


Q ss_pred             eeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEe
Q 013220           99 CVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL  177 (447)
Q Consensus        99 ~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill  177 (447)
                      .++.+..+|..    -+.+|+||||+ ||+|-..+..-  ..+-+..+..++..|+.||-|||++ |||.||+|.+|+|+
T Consensus       411 FL~qlHScFQT----mDRLyFVMEyvnGGDLMyhiQQ~--GkFKEp~AvFYAaEiaigLFFLh~k-gIiYRDLKLDNvmL  483 (683)
T KOG0696|consen  411 FLVQLHSCFQT----MDRLYFVMEYVNGGDLMYHIQQV--GKFKEPVAVFYAAEIAIGLFFLHSK-GIIYRDLKLDNVML  483 (683)
T ss_pred             hHHHHHHHhhh----hhheeeEEEEecCchhhhHHHHh--cccCCchhhhhhHHHHHHhhhhhcC-CeeeeeccccceEe
Confidence            88888888884    48999999999 99988877643  4488889999999999999999997 99999999999999


Q ss_pred             eecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeE
Q 013220          178 VSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKV  257 (447)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL  257 (447)
                                                                                              +.++.+||
T Consensus       484 ------------------------------------------------------------------------d~eGHiKi  491 (683)
T KOG0696|consen  484 ------------------------------------------------------------------------DSEGHIKI  491 (683)
T ss_pred             ------------------------------------------------------------------------ccCCceEe
Confidence                                                                                    66899999


Q ss_pred             eecCccccc---ccccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHH
Q 013220          258 VDFGNACRA---NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMEL  334 (447)
Q Consensus       258 ~Dfg~a~~~---~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~  334 (447)
                      +|||.++.-   ......+|||+-|+|||++...+|+..+|.||+||+||+|+.|+.||.+.+..      ..       
T Consensus       492 ~DFGmcKEni~~~~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE~------el-------  558 (683)
T KOG0696|consen  492 ADFGMCKENIFDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDED------EL-------  558 (683)
T ss_pred             eecccccccccCCcceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCCCHH------HH-------
Confidence            999999732   22334579999999999999999999999999999999999999999887521      11       


Q ss_pred             hCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCCh-----HHH
Q 013220          335 IGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA-----QQC  409 (447)
Q Consensus       335 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta-----~el  409 (447)
                                                         +..+...+..+|...+.++.+++...|...|.+|.-.     .++
T Consensus       559 -----------------------------------F~aI~ehnvsyPKslSkEAv~ickg~ltK~P~kRLGcg~~ge~di  603 (683)
T KOG0696|consen  559 -----------------------------------FQAIMEHNVSYPKSLSKEAVAICKGLLTKHPGKRLGCGPEGERDI  603 (683)
T ss_pred             -----------------------------------HHHHHHccCcCcccccHHHHHHHHHHhhcCCccccCCCCccccch
Confidence                                               3445555667888899999999999999999999754     688


Q ss_pred             hcCcccccccCCcccc
Q 013220          410 LQHPWLSLRNSTRDET  425 (447)
Q Consensus       410 L~hp~f~~~~~~~~~~  425 (447)
                      -.||||+.+.=...+.
T Consensus       604 ~~H~FFR~iDWek~E~  619 (683)
T KOG0696|consen  604 REHPFFRRIDWEKLER  619 (683)
T ss_pred             hhCcchhhccHHHHhh
Confidence            8999999775444433

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.1e-34  Score=281.71  Aligned_cols=253  Identities=21%  Similarity=0.311  Sum_probs=189.5

Q ss_pred             CceEEEEeecccCceEEEEEEeCCC--------------CeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcce
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRT--------------SSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKC   99 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~--------------~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~   99 (447)
                      ++|++.++||+|+||.||+|++..+              ...||+|.+...  ......+.+|+++++.+      .|+|
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l------~h~~   78 (295)
T cd05097           5 QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRL------KNPN   78 (295)
T ss_pred             HhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhC------CCCC
Confidence            6899999999999999999976432              345899987653  23345788999999999      7899


Q ss_pred             eeeecccccccCCCcceEEEEEecc-cccHHHHHHhhc----------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccc
Q 013220          100 VIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSR----------YKGLELNKVREICKYILTGLDYLHRELGIIHT  168 (447)
Q Consensus       100 Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~----------~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~  168 (447)
                      |+++++++..    ....++||||+ +++|.+++....          ...++...+..++.|++.||+|||++ |++|+
T Consensus        79 i~~~~~~~~~----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~-~i~H~  153 (295)
T cd05097          79 IIRLLGVCVS----DDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASL-NFVHR  153 (295)
T ss_pred             cCeEEEEEcC----CCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhc-Ceecc
Confidence            9999999874    36899999999 889988875421          11367788899999999999999996 99999


Q ss_pred             cCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccC
Q 013220          169 DLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCL  248 (447)
Q Consensus       169 Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (447)
                      ||||+||+++                                                                      
T Consensus       154 dlkp~Nill~----------------------------------------------------------------------  163 (295)
T cd05097         154 DLATRNCLVG----------------------------------------------------------------------  163 (295)
T ss_pred             ccChhhEEEc----------------------------------------------------------------------
Confidence            9999999993                                                                      


Q ss_pred             CCcccceeEeecCccccccccc-----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh--CCCCCCCCCCCCC
Q 013220          249 DGIDMRCKVVDFGNACRANKQF-----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT--GDMLFAPKSGQGF  321 (447)
Q Consensus       249 ~~~~~~~kL~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~--g~~Pf~~~~~~~~  321 (447)
                        ....++|+|||++.......     ....++..|+|||.+.+..++.++|+|||||++|+|++  +..||...+    
T Consensus       164 --~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~----  237 (295)
T cd05097         164 --NHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLS----  237 (295)
T ss_pred             --CCCcEEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccC----
Confidence              34569999999986432211     12234678999999988889999999999999999988  667776542    


Q ss_pred             CCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCC
Q 013220          322 CEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPE  401 (447)
Q Consensus       322 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~  401 (447)
                        ....+....+........                                  .....+...+..+.+|+.+||+.||+
T Consensus       238 --~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~l~~li~~~l~~~p~  281 (295)
T cd05097         238 --DEQVIENTGEFFRNQGRQ----------------------------------IYLSQTPLCPSPVFKLMMRCWSRDIK  281 (295)
T ss_pred             --hHHHHHHHHHhhhhcccc----------------------------------ccCCCCCCCCHHHHHHHHHHcCCCch
Confidence              122222211110000000                                  00011223466899999999999999


Q ss_pred             CCCChHHHhc
Q 013220          402 KRPTAQQCLQ  411 (447)
Q Consensus       402 kRpta~elL~  411 (447)
                      +|||++++++
T Consensus       282 ~RPs~~~i~~  291 (295)
T cd05097         282 DRPTFNKIHH  291 (295)
T ss_pred             hCcCHHHHHH
Confidence            9999999964

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.1e-36  Score=317.86  Aligned_cols=265  Identities=23%  Similarity=0.353  Sum_probs=209.2

Q ss_pred             ccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHh----HHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           33 FNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQF----AQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        33 ~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~----~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      ++...|.+++.||.|+||.|.+.+++.+++.||.|++.+....    ...|..|-.+|..-      +.+=|+.+.=+|.
T Consensus        72 l~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~------ns~Wiv~LhyAFQ  145 (1317)
T KOG0612|consen   72 LKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFG------NSEWIVQLHYAFQ  145 (1317)
T ss_pred             CCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcC------CcHHHHHHHHHhc
Confidence            3457899999999999999999999999999999988774322    34677777787666      4455777777777


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCc
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                      +    ..++|+||||| ||+|..++....  .++++.++.+...|+.||.-+|+ +|+|||||||+|||+          
T Consensus       146 D----~~~LYlVMdY~pGGDlltLlSk~~--~~pE~~ArFY~aEiVlAldslH~-mgyVHRDiKPDNvLl----------  208 (1317)
T KOG0612|consen  146 D----ERYLYLVMDYMPGGDLLTLLSKFD--RLPEDWARFYTAEIVLALDSLHS-MGYVHRDIKPDNVLL----------  208 (1317)
T ss_pred             C----ccceEEEEecccCchHHHHHhhcC--CChHHHHHHHHHHHHHHHHHHHh-ccceeccCCcceeEe----------
Confidence            5    47999999999 999999987543  69999999999999999999999 799999999999999          


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                    +..+++||+|||.|..+.
T Consensus       209 --------------------------------------------------------------d~~GHikLADFGsClkm~  226 (1317)
T KOG0612|consen  209 --------------------------------------------------------------DKSGHIKLADFGSCLKMD  226 (1317)
T ss_pred             --------------------------------------------------------------cccCcEeeccchhHHhcC
Confidence                                                                          678999999999997765


Q ss_pred             cc----cccCCCCCCccChHHhh----c-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCC
Q 013220          268 KQ----FAEEIQTRQYRAPEVIL----R-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKM  338 (447)
Q Consensus       268 ~~----~~~~~gt~~y~aPE~l~----~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~  338 (447)
                      ..    ...-+|||-|.|||++.    + +.|+..+|.||+||++|+|+.|..||+..+-.+      ....|+..    
T Consensus       227 ~dG~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYadslve------TY~KIm~h----  296 (1317)
T KOG0612|consen  227 ADGTVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYADSLVE------TYGKIMNH----  296 (1317)
T ss_pred             CCCcEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHHHHHH------HHHHHhch----
Confidence            22    12348999999999996    3 568999999999999999999999997653111      11111110    


Q ss_pred             CHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCC--hhhHHHHHHHHhhccccCCCCCCC---hHHHhcCc
Q 013220          339 PRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFS--ETDAREFAEFLVPLLDFTPEKRPT---AQQCLQHP  413 (447)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~ll~~~L~~dP~kRpt---a~elL~hp  413 (447)
                                                          .+...||  -.+++++.+||.+++ -+|+.|..   ++++-+||
T Consensus       297 ------------------------------------k~~l~FP~~~~VSeeakdLI~~ll-~~~e~RLgrngiedik~Hp  339 (1317)
T KOG0612|consen  297 ------------------------------------KESLSFPDETDVSEEAKDLIEALL-CDREVRLGRNGIEDIKNHP  339 (1317)
T ss_pred             ------------------------------------hhhcCCCcccccCHHHHHHHHHHh-cChhhhcccccHHHHHhCc
Confidence                                                0112233  347889999999988 46999998   99999999


Q ss_pred             ccccccCCcccccccC
Q 013220          414 WLSLRNSTRDETKNKS  429 (447)
Q Consensus       414 ~f~~~~~~~~~~~~~~  429 (447)
                      ||....=.+......+
T Consensus       340 FF~g~~W~~iR~~~pP  355 (1317)
T KOG0612|consen  340 FFEGIDWDNIRESVPP  355 (1317)
T ss_pred             cccCCChhhhhhcCCC
Confidence            9997644333333333

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=100.00  E-value=3.8e-34  Score=309.70  Aligned_cols=131  Identities=25%  Similarity=0.465  Sum_probs=114.5

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|++.++||+|+||+||+|++..+++.||||+++...    .....+..|+.+++.+      .|++|++++..+..  
T Consensus         4 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l------~hp~Iv~~~~~~~~--   75 (669)
T cd05610           4 EEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALS------KSPFIVHLYYSLQS--   75 (669)
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhc------CCCCcCeEEEEEEE--
Confidence            57999999999999999999999999999999887542    2345678899999888      78999999988764  


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeee
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVS  179 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~  179 (447)
                        ..++|+||||+ +++|.+++...  ..+++..++.++.||+.||+|||++ ||+||||||+|||+..
T Consensus        76 --~~~~~lVmEy~~g~~L~~li~~~--~~l~~~~~~~i~~qil~aL~yLH~~-gIiHrDLKP~NILl~~  139 (669)
T cd05610          76 --ANNVYLVMEYLIGGDVKSLLHIY--GYFDEEMAVKYISEVALALDYLHRH-GIIHRDLKPDNMLISN  139 (669)
T ss_pred             --CCEEEEEEeCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CEEeCCccHHHEEEcC
Confidence              46899999999 88999888643  3488999999999999999999996 9999999999999954

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=1.1e-34  Score=281.50  Aligned_cols=247  Identities=18%  Similarity=0.292  Sum_probs=190.1

Q ss_pred             CceEEEEeecccCceEEEEEEeCC-----CCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTR-----TSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~-----~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      .+|.+.++||.|+||.||+|++..     .+..||+|+++...  ...+.+.+|++++..+      .|+||+++++.+.
T Consensus         5 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l------~h~~iv~~~~~~~   78 (283)
T cd05091           5 STVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRL------QHPNIVCLLGVVT   78 (283)
T ss_pred             HHHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcC------CCCCcCeEEEEEc
Confidence            568889999999999999998754     35789999887543  2345678899999888      7899999999887


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhc--------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCC
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSR--------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPE  173 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~--------------~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~  173 (447)
                      ..    ...++++||+ +++|..++....              ...+++..+..++.|++.||+|||++ ||+||||||+
T Consensus        79 ~~----~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~-gi~H~dlkp~  153 (283)
T cd05091          79 KE----QPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSH-HVVHKDLATR  153 (283)
T ss_pred             CC----CceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHc-Cccccccchh
Confidence            54    5789999999 778888774211              12377888899999999999999996 9999999999


Q ss_pred             CeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCccc
Q 013220          174 NILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDM  253 (447)
Q Consensus       174 Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (447)
                      ||++.                                                                        ...
T Consensus       154 Nil~~------------------------------------------------------------------------~~~  161 (283)
T cd05091         154 NVLVF------------------------------------------------------------------------DKL  161 (283)
T ss_pred             heEec------------------------------------------------------------------------CCC
Confidence            99993                                                                        345


Q ss_pred             ceeEeecCccccccccc-----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHH
Q 013220          254 RCKVVDFGNACRANKQF-----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDH  327 (447)
Q Consensus       254 ~~kL~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~  327 (447)
                      .++|+|||++.......     ....+++.|+|||.+.+..++.++|||||||++|+|++ |..||.+..      ....
T Consensus       162 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~------~~~~  235 (283)
T cd05091         162 NVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS------NQDV  235 (283)
T ss_pred             ceEecccccccccccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCC------HHHH
Confidence            69999999986543211     12245678999999988889999999999999999998 888886542      1111


Q ss_pred             HHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChH
Q 013220          328 LALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQ  407 (447)
Q Consensus       328 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~  407 (447)
                      ...+.+    .+                                     ....+...+..+.+|+.+||+.+|++||+++
T Consensus       236 ~~~i~~----~~-------------------------------------~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~  274 (283)
T cd05091         236 IEMIRN----RQ-------------------------------------VLPCPDDCPAWVYTLMLECWNEFPSRRPRFK  274 (283)
T ss_pred             HHHHHc----CC-------------------------------------cCCCCCCCCHHHHHHHHHHhCCCcccCCCHH
Confidence            111110    00                                     0012334567889999999999999999999


Q ss_pred             HHhcC
Q 013220          408 QCLQH  412 (447)
Q Consensus       408 elL~h  412 (447)
                      ++++.
T Consensus       275 ~i~~~  279 (283)
T cd05091         275 DIHSR  279 (283)
T ss_pred             HHHHH
Confidence            99864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=100.00  E-value=3e-34  Score=273.33  Aligned_cols=244  Identities=25%  Similarity=0.387  Sum_probs=192.6

Q ss_pred             eEEEEeecccCceEEEEEEeCCCC----eEEEEEEechhHH--hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           38 YIAQRKLGWGQFSIVWLAYDTRTS----SYVALKIQKSAAQ--FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        38 y~l~~~lG~G~~g~Vy~a~~~~~~----~~vaiK~~~~~~~--~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      +++.+.||.|+||.||+|++...+    ..||+|+++....  ....+.+|+++++.+      +|++|+++++.+... 
T Consensus         1 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~~-   73 (258)
T smart00219        1 LTLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKL------DHPNIVKLLGVCTEE-   73 (258)
T ss_pred             CcccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhc------CCCchheEEEEEcCC-
Confidence            357789999999999999988766    8999998875543  456888999999998      788999999988754 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                         ...+++|||+ +++|.+.+.......+++..+..++.|++.||++||+. |++|+||||+||++             
T Consensus        74 ---~~~~~i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~-~~~h~dl~~~nil~-------------  136 (258)
T smart00219       74 ---EPLMIVMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESK-NFIHRDLAARNCLV-------------  136 (258)
T ss_pred             ---CeeEEEEeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcC-CeeecccccceEEE-------------
Confidence               6899999999 88999888654433389999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF  270 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~  270 (447)
                                                                                 +....++|+|||.+.......
T Consensus       137 -----------------------------------------------------------~~~~~~~l~dfg~~~~~~~~~  157 (258)
T smart00219      137 -----------------------------------------------------------GENLVVKISDFGLSRDLYDDD  157 (258)
T ss_pred             -----------------------------------------------------------ccCCeEEEcccCCceeccccc
Confidence                                                                       335579999999986544321


Q ss_pred             c----cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          271 A----EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       271 ~----~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                      .    ...++..|+|||.+.+..++.++|+|||||++|+|++ |..||...+      .......+..    ..      
T Consensus       158 ~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~------~~~~~~~~~~----~~------  221 (258)
T smart00219      158 YYKKKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMS------NEEVLEYLKK----GY------  221 (258)
T ss_pred             ccccccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHhc----CC------
Confidence            1    1225788999999987788999999999999999998 788886432      1111111110    00      


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                     ....+...+.++.+++.+||..||++|||+.|+++
T Consensus       222 -------------------------------~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~  256 (258)
T smart00219      222 -------------------------------RLPKPENCPPEIYKLMLQCWAEDPEDRPTFSELVE  256 (258)
T ss_pred             -------------------------------CCCCCCcCCHHHHHHHHHHCcCChhhCcCHHHHHh
Confidence                                           01122335678999999999999999999999986

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.2e-34  Score=273.52  Aligned_cols=237  Identities=24%  Similarity=0.381  Sum_probs=184.8

Q ss_pred             EeecccCceEEEEEEeCCCC---eEEEEEEechhHH--hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcce
Q 013220           42 RKLGWGQFSIVWLAYDTRTS---SYVALKIQKSAAQ--FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQH  116 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~---~~vaiK~~~~~~~--~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~  116 (447)
                      ++||+|+||.||+|....++   ..||+|.+.....  ..+.+.+|+++++.+      .|+||+++++++..     ..
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~-----~~   69 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQL------DHPCIVRLIGVCKG-----EP   69 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhc------CCCCeeeEEEEEcC-----Cc
Confidence            47999999999999766554   7899998775543  456788899999998      78999999987642     46


Q ss_pred             EEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCC
Q 013220          117 LCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI  195 (447)
Q Consensus       117 ~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~  195 (447)
                      .++||||+ +++|.+++....  .+++..+..++.|++.||+|||.. +++|+||||+||++                  
T Consensus        70 ~~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lh~~-~i~H~di~p~nili------------------  128 (257)
T cd05060          70 LMLVMELAPLGPLLKYLKKRR--EIPVSDLKELAHQVAMGMAYLESK-HFVHRDLAARNVLL------------------  128 (257)
T ss_pred             eEEEEEeCCCCcHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHhhc-CeeccCcccceEEE------------------
Confidence            89999999 789998886543  588999999999999999999996 99999999999999                  


Q ss_pred             cCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccccC--
Q 013220          196 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEE--  273 (447)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~~~--  273 (447)
                                                                            +....++|+|||.+..........  
T Consensus       129 ------------------------------------------------------~~~~~~kl~df~~~~~~~~~~~~~~~  154 (257)
T cd05060         129 ------------------------------------------------------VNRHQAKISDFGMSRALGAGSDYYRA  154 (257)
T ss_pred             ------------------------------------------------------cCCCcEEeccccccceeecCCccccc
Confidence                                                                  335679999999987543222111  


Q ss_pred             ----CCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          274 ----IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       274 ----~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                          .++..|+|||.+.+..++.++|||||||++|++++ |..||...+      .......+.+   ..          
T Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~------~~~~~~~~~~---~~----------  215 (257)
T cd05060         155 TTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMK------GAEVIAMLES---GE----------  215 (257)
T ss_pred             ccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCC------HHHHHHHHHc---CC----------
Confidence                12457999999988889999999999999999997 999996542      1111111100   00          


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                  ....+...+..+.++|.+||..+|++|||+.++++
T Consensus       216 ----------------------------~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~~l~~  250 (257)
T cd05060         216 ----------------------------RLPRPEECPQEIYSIMLSCWKYRPEDRPTFSELES  250 (257)
T ss_pred             ----------------------------cCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence                                        00122334568899999999999999999999874

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=1.6e-34  Score=277.73  Aligned_cols=243  Identities=26%  Similarity=0.406  Sum_probs=186.7

Q ss_pred             EEEEeecccCceEEEEEEeC----CCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           39 IAQRKLGWGQFSIVWLAYDT----RTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        39 ~l~~~lG~G~~g~Vy~a~~~----~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      .+.+.||.|.||.||+|...    ..+..|+||+++..  ....+.+.+|++.++.+      +|+||+++++++...  
T Consensus         2 ~~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l------~h~ni~~~~g~~~~~--   73 (259)
T PF07714_consen    2 KLIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKL------RHPNIVKLYGFCIEN--   73 (259)
T ss_dssp             EEEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTH------SBTTBE-EEEEEESS--
T ss_pred             EEeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccc------ccccccccccccccc--
Confidence            57889999999999999776    45788999998653  33467889999999999      899999999999843  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                        ...++||||+ +++|.+.+.......++...+..++.|++.||+|||++ +++|++|+++||++              
T Consensus        74 --~~~~lv~e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~-~iiH~~l~~~nill--------------  136 (259)
T PF07714_consen   74 --EPLFLVMEYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSN-NIIHGNLSPSNILL--------------  136 (259)
T ss_dssp             --SSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHT-TEEEST-SGGGEEE--------------
T ss_pred             --ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc--------------
Confidence              4599999999 78999998876445689999999999999999999997 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                +....+||+|||++......  
T Consensus       137 ----------------------------------------------------------~~~~~~Kl~~f~~~~~~~~~~~  158 (259)
T PF07714_consen  137 ----------------------------------------------------------DSNGQVKLSDFGLSRPISEKSK  158 (259)
T ss_dssp             ----------------------------------------------------------ETTTEEEEESTTTGEETTTSSS
T ss_pred             ----------------------------------------------------------cccccccccccccccccccccc
Confidence                                                                      44678999999999765211  


Q ss_pred             ---cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          270 ---FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       270 ---~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                         ......+..|+|||.+.+..++.++||||||+++|++++ |..||...+      .......+.+            
T Consensus       159 ~~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~------~~~~~~~~~~------------  220 (259)
T PF07714_consen  159 YKNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDYD------NEEIIEKLKQ------------  220 (259)
T ss_dssp             EEESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTSC------HHHHHHHHHT------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccc------cccccccccc------------
Confidence               122345678999999999889999999999999999999 778886542      1111111100            


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                   ......+...+..+.++|..||..||++|||+.++++
T Consensus       221 -----------------------------~~~~~~~~~~~~~~~~li~~C~~~~p~~RPs~~~i~~  257 (259)
T PF07714_consen  221 -----------------------------GQRLPIPDNCPKDIYSLIQQCWSHDPEKRPSFQEILQ  257 (259)
T ss_dssp             -----------------------------TEETTSBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH
T ss_pred             -----------------------------cccceeccchhHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence                                         0011133345678889999999999999999999975

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=100.00  E-value=5e-34  Score=272.45  Aligned_cols=245  Identities=22%  Similarity=0.367  Sum_probs=190.9

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      .+|++.+.||.|+||.||+|.+. .+..+|+|.++........+.+|+++++.+      .|++|+++++++...    .
T Consensus         4 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~~~~k~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~~----~   72 (256)
T cd05112           4 SELTLVQEIGSGQFGLVWLGYWL-EKRKVAIKTIREGAMSEEDFIEEAQVMMKL------SHPKLVQLYGVCTER----S   72 (256)
T ss_pred             hHeEEEeeecCcccceEEEEEEe-CCCeEEEEECCCCCCCHHHHHHHHHHHHhC------CCCCeeeEEEEEccC----C
Confidence            57999999999999999999875 467899998876554456788999999998      788999999987743    5


Q ss_pred             eEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          116 HLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       116 ~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      ..++||||+ +++|.+.+.... ..+++..+..++.|++.||++||+. +++|+||||+||++.                
T Consensus        73 ~~~~v~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~-~i~h~dl~p~ni~i~----------------  134 (256)
T cd05112          73 PICLVFEFMEHGCLSDYLRAQR-GKFSQETLLGMCLDVCEGMAYLESS-NVIHRDLAARNCLVG----------------  134 (256)
T ss_pred             ceEEEEEcCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHHHC-CccccccccceEEEc----------------
Confidence            789999999 788887775432 3478899999999999999999996 999999999999993                


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccc---
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA---  271 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~---  271 (447)
                                                                              ....++|+|||.+........   
T Consensus       135 --------------------------------------------------------~~~~~~l~d~g~~~~~~~~~~~~~  158 (256)
T cd05112         135 --------------------------------------------------------ENQVVKVSDFGMTRFVLDDQYTSS  158 (256)
T ss_pred             --------------------------------------------------------CCCeEEECCCcceeecccCccccc
Confidence                                                                    345799999998864432211   


Q ss_pred             -cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          272 -EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       272 -~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                       ...++..|+|||.+.+..++.++|+|||||++|+|++ |..||....      .......+.+.               
T Consensus       159 ~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~------~~~~~~~~~~~---------------  217 (256)
T cd05112         159 TGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRS------NSEVVETINAG---------------  217 (256)
T ss_pred             CCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCC------HHHHHHHHhCC---------------
Confidence             1234568999999988889999999999999999998 999986432      11111111000               


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                .....+...+.++.+|+.+||+.+|++|||+.+++++
T Consensus       218 --------------------------~~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~~l~~  254 (256)
T cd05112         218 --------------------------FRLYKPRLASQSVYELMQHCWKERPEDRPSFSLLLHQ  254 (256)
T ss_pred             --------------------------CCCCCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHh
Confidence                                      0000112235689999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=7.3e-34  Score=280.60  Aligned_cols=248  Identities=23%  Similarity=0.346  Sum_probs=190.5

Q ss_pred             CCceEEEEeecccCceEEEEEEeC-------CCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDT-------RTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLID  105 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~-------~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~  105 (447)
                      .++|.+.++||+|+||.||+|++.       .....+|+|.++...  .....+.+|+++++.+.     .|+||+++++
T Consensus        11 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~~iv~~~~   85 (314)
T cd05099          11 RDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIG-----KHKNIINLLG   85 (314)
T ss_pred             HHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhcc-----CCCCeeeEEE
Confidence            378999999999999999999753       235679999877432  33456788999998884     6999999999


Q ss_pred             cccccCCCcceEEEEEecc-cccHHHHHHhhc--------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccC
Q 013220          106 HFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSR--------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDL  170 (447)
Q Consensus       106 ~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~--------------~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Di  170 (447)
                      ++...    ...+++|||+ +++|.+++....              ...++...+..++.|++.||.|||++ ||+||||
T Consensus        86 ~~~~~----~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~-gi~H~dl  160 (314)
T cd05099          86 VCTQE----GPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESR-RCIHRDL  160 (314)
T ss_pred             EEccC----CceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHC-Ceeeccc
Confidence            88743    5799999999 889998886532              12377888999999999999999996 9999999


Q ss_pred             CCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCC
Q 013220          171 KPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDG  250 (447)
Q Consensus       171 kp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (447)
                      ||+||++.                                                                        
T Consensus       161 kp~Nill~------------------------------------------------------------------------  168 (314)
T cd05099         161 AARNVLVT------------------------------------------------------------------------  168 (314)
T ss_pred             cceeEEEc------------------------------------------------------------------------
Confidence            99999993                                                                        


Q ss_pred             cccceeEeecCccccccccc-----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCc
Q 013220          251 IDMRCKVVDFGNACRANKQF-----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCED  324 (447)
Q Consensus       251 ~~~~~kL~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~  324 (447)
                      .+..++|+|||.+.......     ....++..|+|||.+.+..++.++|||||||++|+|++ |..||...+      .
T Consensus       169 ~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~------~  242 (314)
T cd05099         169 EDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIP------V  242 (314)
T ss_pred             CCCcEEEccccccccccccccccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCCC------H
Confidence            35679999999997543211     11123467999999988889999999999999999998 888886542      1


Q ss_pred             hHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC
Q 013220          325 EDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP  404 (447)
Q Consensus       325 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp  404 (447)
                      ......+.    ..                                     .....+...+.++.++|.+||..||++||
T Consensus       243 ~~~~~~~~----~~-------------------------------------~~~~~~~~~~~~l~~li~~cl~~~p~~Rp  281 (314)
T cd05099         243 EELFKLLR----EG-------------------------------------HRMDKPSNCTHELYMLMRECWHAVPTQRP  281 (314)
T ss_pred             HHHHHHHH----cC-------------------------------------CCCCCCCCCCHHHHHHHHHHcCCCcccCc
Confidence            11111100    00                                     00112334466888999999999999999


Q ss_pred             ChHHHhc
Q 013220          405 TAQQCLQ  411 (447)
Q Consensus       405 ta~elL~  411 (447)
                      |+.++++
T Consensus       282 s~~~ll~  288 (314)
T cd05099         282 TFKQLVE  288 (314)
T ss_pred             CHHHHHH
Confidence            9999985

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=2.9e-34  Score=278.60  Aligned_cols=247  Identities=23%  Similarity=0.344  Sum_probs=191.0

Q ss_pred             CCceEEEEeecccCceEEEEEEe-----CCCCeEEEEEEechh-HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYD-----TRTSSYVALKIQKSA-AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~-----~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      ..+|.+.++||+|+||.||++..     ..++..+|+|.++.. ......+.+|+++++.+      .|+||+++++++.
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~   77 (280)
T cd05092           4 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVL------QHQHIVRFYGVCT   77 (280)
T ss_pred             hHhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcC------CCCCCceEEEEEe
Confidence            46899999999999999999964     234678999976543 33356788999999999      7889999999877


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhcc-------------CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCC
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSRY-------------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPEN  174 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~-------------~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~N  174 (447)
                      .    +...+++|||+ +++|.+++.....             ..+++..+..++.|++.||+|||+. ||+|+||||+|
T Consensus        78 ~----~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~-~i~H~dlkp~n  152 (280)
T cd05092          78 E----GRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASL-HFVHRDLATRN  152 (280)
T ss_pred             c----CCceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHC-CeecccccHhh
Confidence            5    36789999999 8899888764321             2378889999999999999999996 99999999999


Q ss_pred             eEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccc
Q 013220          175 ILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMR  254 (447)
Q Consensus       175 ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (447)
                      |++.                                                                        ....
T Consensus       153 il~~------------------------------------------------------------------------~~~~  160 (280)
T cd05092         153 CLVG------------------------------------------------------------------------QGLV  160 (280)
T ss_pred             EEEc------------------------------------------------------------------------CCCC
Confidence            9993                                                                        3567


Q ss_pred             eeEeecCccccccccc-----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHH
Q 013220          255 CKVVDFGNACRANKQF-----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHL  328 (447)
Q Consensus       255 ~kL~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~  328 (447)
                      ++|+|||++.......     ....++..|+|||.+.+..++.++|||||||++|+|++ |..||....      ....+
T Consensus       161 ~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~------~~~~~  234 (280)
T cd05092         161 VKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLS------NTEAI  234 (280)
T ss_pred             EEECCCCceeEcCCCceeecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCC------HHHHH
Confidence            9999999986443211     12234678999999998889999999999999999998 899986542      11111


Q ss_pred             HHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHH
Q 013220          329 ALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQ  408 (447)
Q Consensus       329 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~e  408 (447)
                      ..+..  +.                                       ....+...+..+.+||.+||+.||.+||++.+
T Consensus       235 ~~~~~--~~---------------------------------------~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~  273 (280)
T cd05092         235 ECITQ--GR---------------------------------------ELERPRTCPPEVYAIMQGCWQREPQQRMVIKD  273 (280)
T ss_pred             HHHHc--Cc---------------------------------------cCCCCCCCCHHHHHHHHHHccCChhhCCCHHH
Confidence            11100  00                                       01122344567889999999999999999999


Q ss_pred             Hhc
Q 013220          409 CLQ  411 (447)
Q Consensus       409 lL~  411 (447)
                      +++
T Consensus       274 l~~  276 (280)
T cd05092         274 IHS  276 (280)
T ss_pred             HHH
Confidence            974

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=2.4e-34  Score=279.66  Aligned_cols=260  Identities=24%  Similarity=0.350  Sum_probs=192.8

Q ss_pred             ceEEEEeecccCceEEEEEEe----CCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYD----TRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~----~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      -|++.++||+|+||.||+|+.    ..++..||+|.++..  ......+.+|+++++.+      .|+||+++++++...
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~~   78 (284)
T cd05079           5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNL------YHENIVKYKGICTED   78 (284)
T ss_pred             hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhC------CCCCeeeeeeEEecC
Confidence            478999999999999999973    456889999987643  23345788999999999      789999999987653


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                        ++...++||||+ +++|.+.+.... ..+++..+..++.|++.||+|||++ ||+||||||+||+++           
T Consensus        79 --~~~~~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~i~~~i~~aL~~lH~~-gi~H~dlkp~Nil~~-----------  143 (284)
T cd05079          79 --GGNGIKLIMEFLPSGSLKEYLPRNK-NKINLKQQLKYAVQICKGMDYLGSR-QYVHRDLAARNVLVE-----------  143 (284)
T ss_pred             --CCCceEEEEEccCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHC-CeeecccchheEEEc-----------
Confidence              345789999999 889998875432 3478899999999999999999997 999999999999993           


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                   .+..++|+|||.+......
T Consensus       144 -------------------------------------------------------------~~~~~~l~dfg~~~~~~~~  162 (284)
T cd05079         144 -------------------------------------------------------------SEHQVKIGDFGLTKAIETD  162 (284)
T ss_pred             -------------------------------------------------------------CCCCEEECCCccccccccC
Confidence                                                                         3556999999998654322


Q ss_pred             c------ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhh
Q 013220          270 F------AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  343 (447)
Q Consensus       270 ~------~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  343 (447)
                      .      ....++..|+|||.+.+..++.++|||||||++|+|++++.|+.....           ......+...... 
T Consensus       163 ~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~-----------~~~~~~~~~~~~~-  230 (284)
T cd05079         163 KEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMT-----------LFLKMIGPTHGQM-  230 (284)
T ss_pred             ccceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCccccc-----------hhhhhcccccccc-
Confidence            1      123467789999999888899999999999999999998776543210           0011111110000 


Q ss_pred             hCCCCccchhcccchhhhhhhcccCchhHHhh--hhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          344 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLV--DKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                              .+.      .        ....+.  .....+...+..+.+||.+||+.||++|||+++++++
T Consensus       231 --------~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~  279 (284)
T cd05079         231 --------TVT------R--------LVRVLEEGKRLPRPPNCPEEVYQLMRKCWEFQPSKRTTFQNLIEG  279 (284)
T ss_pred             --------cHH------H--------HHHHHHcCccCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHH
Confidence                    000      0        000000  0111233456789999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-34  Score=287.45  Aligned_cols=264  Identities=25%  Similarity=0.368  Sum_probs=199.4

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHh-HHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQF-AQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~-~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      +.|.-...||+|+||.||+|....+ ..||||.+...... ..+|.+|++++.++      +|+|+|++++++.+..   
T Consensus        75 ~~Fs~~~~ig~Ggfg~VYkG~l~~~-~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l------~H~Nlv~LlGyC~e~~---  144 (361)
T KOG1187|consen   75 NNFSESNLIGEGGFGTVYKGVLSDG-TVVAVKRLSSNSGQGEREFLNEVEILSRL------RHPNLVKLLGYCLEGG---  144 (361)
T ss_pred             hCCchhcceecCCCeEEEEEEECCC-CEEEEEEecCCCCcchhHHHHHHHHHhcC------CCcCcccEEEEEecCC---
Confidence            5688889999999999999986544 89999987766544 56699999999999      8999999999998642   


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCC--cccccCCCCCeEeeecCCCCCCcccCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELG--IIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~g--IiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                      .+.++|+||| .|+|.+.+.......+++.....|+.+++.||+|||..+.  |||||||+.|||+              
T Consensus       145 ~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILL--------------  210 (361)
T KOG1187|consen  145 EHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILL--------------  210 (361)
T ss_pred             ceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeE--------------
Confidence            1699999999 7899988865432268999999999999999999999653  9999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc-cc
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-QF  270 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~-~~  270 (447)
                                                                                +.++++||+|||+|+.... ..
T Consensus       211 ----------------------------------------------------------D~~~~aKlsDFGLa~~~~~~~~  232 (361)
T KOG1187|consen  211 ----------------------------------------------------------DEDFNAKLSDFGLAKLGPEGDT  232 (361)
T ss_pred             ----------------------------------------------------------CCCCCEEccCccCcccCCcccc
Confidence                                                                      6688999999999965443 22


Q ss_pred             c--cC-CCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          271 A--EE-IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       271 ~--~~-~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                      .  .. .||..|+|||++.....+.|+|||||||+++++++|+.+.......+   ...........+...         
T Consensus       233 ~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~---~~~l~~w~~~~~~~~---------  300 (361)
T KOG1187|consen  233 SVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRG---ELSLVEWAKPLLEEG---------  300 (361)
T ss_pred             ceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcc---cccHHHHHHHHHHCc---------
Confidence            2  22 78999999999988889999999999999999999997776432111   111222222221111         


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCCh-hhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSE-TDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                      +..+.                 .+..+.. ..++. .....+..+..+|++.+|.+||++.|+++
T Consensus       301 ~~~ei-----------------iD~~l~~-~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~  347 (361)
T KOG1187|consen  301 KLREI-----------------VDPRLKE-GEYPDEKEVKKLAELALRCLRPDPKERPTMSQVVK  347 (361)
T ss_pred             chhhe-----------------eCCCccC-CCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHHH
Confidence            00000                 0111110 11222 34556889999999999999999999753

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=100.00  E-value=6.4e-34  Score=278.41  Aligned_cols=254  Identities=22%  Similarity=0.336  Sum_probs=189.8

Q ss_pred             CCceEEEEeecccCceEEEEEEeC----------------CCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDT----------------RTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSN   96 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~----------------~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~   96 (447)
                      .++|++.++||+|+||+||+|.+.                .+...||+|++...  ......+.+|+++++.+      .
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l------~   77 (296)
T cd05095           4 RKRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRL------K   77 (296)
T ss_pred             hhhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhC------C
Confidence            368999999999999999998543                23457999988753  23456788999999999      7


Q ss_pred             cceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhcc---------CCCCHHHHHHHHHHHHHHHHHHHhhCCcc
Q 013220           97 EKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRY---------KGLELNKVREICKYILTGLDYLHRELGII  166 (447)
Q Consensus        97 ~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~---------~~l~~~~~~~i~~qil~aL~~lH~~~gIi  166 (447)
                      |+||+++++++...    +..+++|||+ +++|.+++.....         ..+++..+..++.|++.||+|||+. ||+
T Consensus        78 ~~~i~~~~~~~~~~----~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~-~i~  152 (296)
T cd05095          78 DPNIIRLLAVCITS----DPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSL-NFV  152 (296)
T ss_pred             CCCcceEEEEEecC----CccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHC-Cee
Confidence            89999999988753    6789999999 7899888764321         2366778999999999999999996 999


Q ss_pred             cccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCc
Q 013220          167 HTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPER  246 (447)
Q Consensus       167 H~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (447)
                      |+||||+||+++                                                                    
T Consensus       153 H~dlkp~Nili~--------------------------------------------------------------------  164 (296)
T cd05095         153 HRDLATRNCLVG--------------------------------------------------------------------  164 (296)
T ss_pred             cccCChheEEEc--------------------------------------------------------------------
Confidence            999999999993                                                                    


Q ss_pred             cCCCcccceeEeecCccccccccc-----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh--CCCCCCCCCCC
Q 013220          247 CLDGIDMRCKVVDFGNACRANKQF-----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT--GDMLFAPKSGQ  319 (447)
Q Consensus       247 ~~~~~~~~~kL~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~--g~~Pf~~~~~~  319 (447)
                          ....++|+|||++.......     ....++..|+|||...+..++.++|+|||||++|+|++  |..||...+  
T Consensus       165 ----~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~--  238 (296)
T cd05095         165 ----KNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLS--  238 (296)
T ss_pred             ----CCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccccC--
Confidence                35679999999986543221     11234678999999888889999999999999999998  778886542  


Q ss_pred             CCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccC
Q 013220          320 GFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFT  399 (447)
Q Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~d  399 (447)
                          ....+....+.                  +.....                ......+...+..+.+|+.+||+.|
T Consensus       239 ----~~~~~~~~~~~------------------~~~~~~----------------~~~~~~~~~~~~~~~~li~~cl~~~  280 (296)
T cd05095         239 ----DEQVIENTGEF------------------FRDQGR----------------QVYLPKPALCPDSLYKLMLSCWRRN  280 (296)
T ss_pred             ----hHHHHHHHHHH------------------Hhhccc----------------cccCCCCCCCCHHHHHHHHHHcCCC
Confidence                11111111000                  000000                0000112334568899999999999


Q ss_pred             CCCCCChHHHhc
Q 013220          400 PEKRPTAQQCLQ  411 (447)
Q Consensus       400 P~kRpta~elL~  411 (447)
                      |++|||+.++++
T Consensus       281 p~~Rp~~~~i~~  292 (296)
T cd05095         281 AKERPSFQEIHA  292 (296)
T ss_pred             cccCCCHHHHHH
Confidence            999999999874

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=5.4e-34  Score=274.77  Aligned_cols=246  Identities=19%  Similarity=0.295  Sum_probs=191.5

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCC---CeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRT---SSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~---~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      ..+|.+.++||.|+||.||+|.+...   ...|++|.....  ....+.+.+|+++++.+      .|+||+++++++..
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~------~h~~i~~~~~~~~~   78 (270)
T cd05056           5 REDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQF------DHPHIVKLIGVITE   78 (270)
T ss_pred             hhhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhC------CCCchhceeEEEcC
Confidence            46799999999999999999986543   457899976654  33456788999999999      78999999998764


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                           ...++||||+ +++|.+++.... ..+++..+..++.|++.||+|||+. |++|+||||+||+++          
T Consensus        79 -----~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~-~~~H~dl~p~nili~----------  141 (270)
T cd05056          79 -----NPVWIVMELAPLGELRSYLQVNK-YSLDLASLILYSYQLSTALAYLESK-RFVHRDIAARNVLVS----------  141 (270)
T ss_pred             -----CCcEEEEEcCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhC-CeeccccChheEEEe----------
Confidence                 3578999999 889998886533 3488999999999999999999996 999999999999993          


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                    ....++|+|||++.....
T Consensus       142 --------------------------------------------------------------~~~~~~l~d~g~~~~~~~  159 (270)
T cd05056         142 --------------------------------------------------------------SPDCVKLGDFGLSRYLED  159 (270)
T ss_pred             --------------------------------------------------------------cCCCeEEccCceeeeccc
Confidence                                                                          345799999999865433


Q ss_pred             cc----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhh
Q 013220          269 QF----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  343 (447)
Q Consensus       269 ~~----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  343 (447)
                      ..    ....++..|+|||.+....++.++|||||||++|++++ |..||...+.      ......+..  +       
T Consensus       160 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~------~~~~~~~~~--~-------  224 (270)
T cd05056         160 ESYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKN------NDVIGRIEN--G-------  224 (270)
T ss_pred             ccceecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCH------HHHHHHHHc--C-------
Confidence            21    11223567999999988889999999999999999986 9999965531      111111100  0       


Q ss_pred             hCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          344 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                      .....+...+..+.++|.+||..+|++|||+.+++..
T Consensus       225 --------------------------------~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~~~~  261 (270)
T cd05056         225 --------------------------------ERLPMPPNCPPTLYSLMTKCWAYDPSKRPRFTELKAQ  261 (270)
T ss_pred             --------------------------------CcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                                            0111233456789999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=9.2e-34  Score=272.65  Aligned_cols=245  Identities=19%  Similarity=0.305  Sum_probs=189.9

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCe---EEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSS---YVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~---~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      ++|+..+.||+|+||.||+|.+..++.   .+|+|.++..  ....+.+..|+++++.+      .|+||+++++++...
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~~   78 (268)
T cd05063           5 SHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQF------SHHNIIRLEGVVTKF   78 (268)
T ss_pred             HHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcC------CCCCeeEEEEEEccC
Confidence            589999999999999999998765543   7999987643  23356788899999888      788999999988754


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                          ...++||||+ +++|.+++.... ..+++..+..++.|++.||+|||+. |++|+||||+||++            
T Consensus        79 ----~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~al~~lH~~-~i~H~dlkp~Nili------------  140 (268)
T cd05063          79 ----KPAMIITEYMENGALDKYLRDHD-GEFSSYQLVGMLRGIAAGMKYLSDM-NYVHRDLAARNILV------------  140 (268)
T ss_pred             ----CCcEEEEEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CeeccccchhhEEE------------
Confidence                6789999999 778888775432 4588899999999999999999996 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                  +....++|+|||++......
T Consensus       141 ------------------------------------------------------------~~~~~~kl~dfg~~~~~~~~  160 (268)
T cd05063         141 ------------------------------------------------------------NSNLECKVSDFGLSRVLEDD  160 (268)
T ss_pred             ------------------------------------------------------------cCCCcEEECCCccceecccc
Confidence                                                                        33567999999998654322


Q ss_pred             cccC------CCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh
Q 013220          270 FAEE------IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  342 (447)
Q Consensus       270 ~~~~------~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (447)
                      ....      ..+..|+|||.+.+..++.++|+|||||++|++++ |..||...+      .......+.. ...     
T Consensus       161 ~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~------~~~~~~~i~~-~~~-----  228 (268)
T cd05063         161 PEGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMS------NHEVMKAIND-GFR-----  228 (268)
T ss_pred             cccceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCC------HHHHHHHHhc-CCC-----
Confidence            1111      12456999999988888999999999999999987 999996542      1111111111 000     


Q ss_pred             hhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                         ...+...+.++.+++.+||+.+|++||++.++++
T Consensus       229 -----------------------------------~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~  262 (268)
T cd05063         229 -----------------------------------LPAPMDCPSAVYQLMLQCWQQDRARRPRFVDIVN  262 (268)
T ss_pred             -----------------------------------CCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence                                               0011223567889999999999999999999975

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.9e-35  Score=305.82  Aligned_cols=245  Identities=23%  Similarity=0.398  Sum_probs=202.8

Q ss_pred             CceEEEEeecccCceEEEEEEeC-----CCCeEEEEEEechhHH--hHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDT-----RTSSYVALKIQKSAAQ--FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~-----~~~~~vaiK~~~~~~~--~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      ++-++.++||+|.||.||+|+-.     .....||||.++..+.  ..++|.+|++++..+      +|+|||++++++.
T Consensus       486 ~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l------~H~nIVrLlGVC~  559 (774)
T KOG1026|consen  486 SDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAEL------QHPNIVRLLGVCR  559 (774)
T ss_pred             hheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhc------cCCCeEEEEEEEc
Confidence            45678899999999999999643     3467899999887654  467999999999999      8999999999998


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhc--------cC----CCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCe
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSR--------YK----GLELNKVREICKYILTGLDYLHRELGIIHTDLKPENI  175 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~--------~~----~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Ni  175 (447)
                      .    ++.+|+|+||| .|+|..++....        ..    +++..+...|+.||+.|+.||-+. ..|||||-.+|+
T Consensus       560 ~----~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~-~FVHRDLATRNC  634 (774)
T KOG1026|consen  560 E----GDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSH-HFVHRDLATRNC  634 (774)
T ss_pred             c----CCeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhC-cccccchhhhhc
Confidence            4    58999999999 899999885432        11    277889999999999999999996 999999999999


Q ss_pred             EeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccce
Q 013220          176 LLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRC  255 (447)
Q Consensus       176 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (447)
                      ||                                                                        .....|
T Consensus       635 LV------------------------------------------------------------------------ge~l~V  642 (774)
T KOG1026|consen  635 LV------------------------------------------------------------------------GENLVV  642 (774)
T ss_pred             ee------------------------------------------------------------------------ccceEE
Confidence            99                                                                        447889


Q ss_pred             eEeecCcccccccccccCC-----CCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHH
Q 013220          256 KVVDFGNACRANKQFAEEI-----QTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLA  329 (447)
Q Consensus       256 kL~Dfg~a~~~~~~~~~~~-----gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~  329 (447)
                      |++|||+++..-......+     -+.+|||||.|....||+++||||+||+|||+++ |..||.+.+      +...++
T Consensus       643 KIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glS------n~EVIe  716 (774)
T KOG1026|consen  643 KISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLS------NQEVIE  716 (774)
T ss_pred             EecccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccc------hHHHHH
Confidence            9999999975433333333     3679999999999999999999999999999996 999998874      444444


Q ss_pred             HHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHH
Q 013220          330 LMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQC  409 (447)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~el  409 (447)
                      .+.+-                                         .-..-|++.|.++.+|+..||+.+|.+||+++||
T Consensus       717 ~i~~g-----------------------------------------~lL~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI  755 (774)
T KOG1026|consen  717 CIRAG-----------------------------------------QLLSCPENCPTEVYSLMLECWNENPKRRPSFKEI  755 (774)
T ss_pred             HHHcC-----------------------------------------CcccCCCCCCHHHHHHHHHHhhcCcccCCCHHHH
Confidence            44321                                         0123567889999999999999999999999998


Q ss_pred             h
Q 013220          410 L  410 (447)
Q Consensus       410 L  410 (447)
                      -
T Consensus       756 ~  756 (774)
T KOG1026|consen  756 H  756 (774)
T ss_pred             H
Confidence            4

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=4.3e-34  Score=275.01  Aligned_cols=244  Identities=19%  Similarity=0.278  Sum_probs=179.4

Q ss_pred             EeecccCceEEEEEEeCC------------CCeEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           42 RKLGWGQFSIVWLAYDTR------------TSSYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~------------~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      +.||+|+||.||+|+...            ....+++|++.... .....+.+|+.+++.+      +|+||+++++++.
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l------~hp~iv~~~~~~~   74 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQV------SHKHIVLLYGVCV   74 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhC------CCCCEeeEEEEEe
Confidence            468999999999997432            23468899876543 2344677888888888      8999999999887


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCc
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                      ..    ...+++|||+ ++.|..++.. ....+++..+..++.|++.||+|||++ ||+||||||+||++......    
T Consensus        75 ~~----~~~~lv~e~~~~~~l~~~~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~-~ivH~dlkp~Nill~~~~~~----  144 (262)
T cd05077          75 RD----VENIMVEEFVEFGPLDLFMHR-KSDVLTTPWKFKVAKQLASALSYLEDK-DLVHGNVCTKNILLAREGID----  144 (262)
T ss_pred             cC----CCCEEEEecccCCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHhhhC-CeECCCCCcccEEEecCCcc----
Confidence            43    5789999999 6677666543 234589999999999999999999996 99999999999999542100    


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                   ......++++|||.+....
T Consensus       145 -------------------------------------------------------------~~~~~~~~l~d~g~~~~~~  163 (262)
T cd05077         145 -------------------------------------------------------------GECGPFIKLSDPGIPITVL  163 (262)
T ss_pred             -------------------------------------------------------------CCCCceeEeCCCCCCcccc
Confidence                                                                         0122348999999886543


Q ss_pred             cccccCCCCCCccChHHhh-cCCCCccchhHhHHHHHHHHh-hCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          268 KQFAEEIQTRQYRAPEVIL-RAGYSFSVDMWSFACTAFELA-TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       268 ~~~~~~~gt~~y~aPE~l~-~~~~~~~~DiwSlGvil~~l~-~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                      .. ....++..|+|||.+. +..++.++|||||||++|+|+ .|..||.....       ...   ....          
T Consensus       164 ~~-~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~-------~~~---~~~~----------  222 (262)
T cd05077         164 SR-QECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKTL-------AEK---ERFY----------  222 (262)
T ss_pred             Cc-ccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcch-------hHH---HHHH----------
Confidence            22 3346788999999987 456889999999999999997 58888754320       000   0000          


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                   ..........+..+.+||.+||+.||++||++.++|++
T Consensus       223 -----------------------------~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp~~~~il~~  260 (262)
T cd05077         223 -----------------------------EGQCMLVTPSCKELADLMTHCMNYDPNQRPFFRAIMRD  260 (262)
T ss_pred             -----------------------------hcCccCCCCChHHHHHHHHHHcCCChhhCcCHHHHHHh
Confidence                                         00001112234578899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=7.6e-34  Score=278.94  Aligned_cols=249  Identities=21%  Similarity=0.338  Sum_probs=191.7

Q ss_pred             CCceEEEEeecccCceEEEEEEeC-------CCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDT-------RTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLID  105 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~-------~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~  105 (447)
                      .++|.+.+.||+|+||.||+|++.       ..+..||+|..+..  ....+.+.+|+++++.+.     .|+||+++++
T Consensus        14 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~~i~~~~~   88 (304)
T cd05101          14 RDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIG-----KHKNIINLLG   88 (304)
T ss_pred             HHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhc-----cCCCchheeE
Confidence            578999999999999999999742       23457999987643  233467889999999885     6899999999


Q ss_pred             cccccCCCcceEEEEEecc-cccHHHHHHhhcc--------------CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccC
Q 013220          106 HFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRY--------------KGLELNKVREICKYILTGLDYLHRELGIIHTDL  170 (447)
Q Consensus       106 ~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~--------------~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Di  170 (447)
                      .+...    ...+++|||+ +++|.+++.....              ..++...+..++.|++.||+|||++ ||+||||
T Consensus        89 ~~~~~----~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~-givH~dl  163 (304)
T cd05101          89 ACTQD----GPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQ-KCIHRDL  163 (304)
T ss_pred             EEecC----CceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHC-Ceeeccc
Confidence            88753    6789999999 7899988865321              2367778899999999999999997 9999999


Q ss_pred             CCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCC
Q 013220          171 KPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDG  250 (447)
Q Consensus       171 kp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (447)
                      ||+||++.                                                                        
T Consensus       164 kp~Nili~------------------------------------------------------------------------  171 (304)
T cd05101         164 AARNVLVT------------------------------------------------------------------------  171 (304)
T ss_pred             ccceEEEc------------------------------------------------------------------------
Confidence            99999993                                                                        


Q ss_pred             cccceeEeecCccccccccc-----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCc
Q 013220          251 IDMRCKVVDFGNACRANKQF-----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCED  324 (447)
Q Consensus       251 ~~~~~kL~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~  324 (447)
                      ....++|+|||.+.......     ....++..|+|||.+.+..++.++|||||||++|+|++ |..||...+      .
T Consensus       172 ~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~------~  245 (304)
T cd05101         172 ENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP------V  245 (304)
T ss_pred             CCCcEEECCCccceecccccccccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCC------H
Confidence            34679999999987553211     11234578999999988889999999999999999998 788886442      1


Q ss_pred             hHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC
Q 013220          325 EDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP  404 (447)
Q Consensus       325 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp  404 (447)
                      .    .+.+.+....                                     ....+...+..+.+||.+||+.+|.+||
T Consensus       246 ~----~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~li~~cl~~~p~~Rp  284 (304)
T cd05101         246 E----ELFKLLKEGH-------------------------------------RMDKPANCTNELYMMMRDCWHAIPSHRP  284 (304)
T ss_pred             H----HHHHHHHcCC-------------------------------------cCCCCCCCCHHHHHHHHHHcccChhhCC
Confidence            1    1111110000                                     0012234467899999999999999999


Q ss_pred             ChHHHhcC
Q 013220          405 TAQQCLQH  412 (447)
Q Consensus       405 ta~elL~h  412 (447)
                      |+.++++.
T Consensus       285 s~~e~l~~  292 (304)
T cd05101         285 TFKQLVED  292 (304)
T ss_pred             CHHHHHHH
Confidence            99999865

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=9.5e-34  Score=270.66  Aligned_cols=240  Identities=25%  Similarity=0.323  Sum_probs=187.5

Q ss_pred             EeecccCceEEEEEEeCC-C--CeEEEEEEechhHH--hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcce
Q 013220           42 RKLGWGQFSIVWLAYDTR-T--SSYVALKIQKSAAQ--FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQH  116 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~-~--~~~vaiK~~~~~~~--~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~  116 (447)
                      +.||+|++|+||+|.+.. .  ...||+|.+.....  ..+.+..|+++++.+      .|+||+++++.+..     ..
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~-----~~   69 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSL------DHENLIRLYGVVLT-----HP   69 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhc------CCCCccceeEEEcC-----Ce
Confidence            468999999999998755 2  33699998776543  456788999999999      78999999998764     57


Q ss_pred             EEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCC
Q 013220          117 LCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI  195 (447)
Q Consensus       117 ~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~  195 (447)
                      .++||||+ +++|.+.+.......+++..+..++.|++.||+|||++ |++|+||||+||++.                 
T Consensus        70 ~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~-~i~H~di~p~nil~~-----------------  131 (257)
T cd05040          70 LMMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESK-RFIHRDLAARNILLA-----------------  131 (257)
T ss_pred             EEEEEEecCCCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhC-CccccccCcccEEEe-----------------
Confidence            99999999 88999888654324588999999999999999999997 999999999999993                 


Q ss_pred             cCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc-----
Q 013220          196 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF-----  270 (447)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~-----  270 (447)
                                                                             ....++|+|||.+.......     
T Consensus       132 -------------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~  156 (257)
T cd05040         132 -------------------------------------------------------SDDKVKIGDFGLMRALPQNEDHYVM  156 (257)
T ss_pred             -------------------------------------------------------cCCEEEeccccccccccccccceec
Confidence                                                                   35679999999987654321     


Q ss_pred             -ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          271 -AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       271 -~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                       ....++..|+|||.+....++.++|||||||++|+|++ |..||...+      .......+..    ..         
T Consensus       157 ~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~------~~~~~~~~~~----~~---------  217 (257)
T cd05040         157 EEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLS------GSQILKKIDK----EG---------  217 (257)
T ss_pred             ccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHh----cC---------
Confidence             12345778999999988889999999999999999998 999986432      1111111110    00         


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                 .....+...+..+.+++.+||+.+|++|||+.++++
T Consensus       218 ---------------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~  253 (257)
T cd05040         218 ---------------------------ERLERPEACPQDIYNVMLQCWAHNPADRPTFAALRE  253 (257)
T ss_pred             ---------------------------CcCCCCccCCHHHHHHHHHHCCCCcccCCCHHHHHH
Confidence                                       000122334668899999999999999999999975

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=6.7e-34  Score=274.44  Aligned_cols=241  Identities=22%  Similarity=0.305  Sum_probs=184.5

Q ss_pred             EeecccCceEEEEEEeCCCCe--EEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceE
Q 013220           42 RKLGWGQFSIVWLAYDTRTSS--YVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHL  117 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~~--~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~  117 (447)
                      +.||+|+||.||+|++..++.  .+++|..+..  ....+.+..|+++++.+.     +|+||+++++.+...    ...
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~~iv~~~~~~~~~----~~~   71 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLG-----HHPNIINLLGACEHR----GYL   71 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhc-----cCCCeeeEEEEEecC----CCc
Confidence            358999999999999877764  5688877642  344567888999999985     689999999998754    578


Q ss_pred             EEEEecc-cccHHHHHHhhc--------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCC
Q 013220          118 CMVLEFL-GDSLLRLIKYSR--------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTID  182 (447)
Q Consensus       118 ~lvmE~~-~~~L~~~~~~~~--------------~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~  182 (447)
                      +++|||+ +++|.+++....              ...+++..+..++.|++.||+|||++ |++|+||||+||++     
T Consensus        72 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~-~i~H~dikp~nili-----  145 (270)
T cd05047          72 YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK-QFIHRDLAARNILV-----  145 (270)
T ss_pred             eEEEEeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHC-CEeecccccceEEE-----
Confidence            9999999 889998886432              12478889999999999999999996 99999999999999     


Q ss_pred             CCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCc
Q 013220          183 PSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGN  262 (447)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~  262 (447)
                                                                                         +....++|+|||+
T Consensus       146 -------------------------------------------------------------------~~~~~~kl~dfgl  158 (270)
T cd05047         146 -------------------------------------------------------------------GENYVAKIADFGL  158 (270)
T ss_pred             -------------------------------------------------------------------cCCCeEEECCCCC
Confidence                                                                               3356799999999


Q ss_pred             cccccccccc--CCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCC
Q 013220          263 ACRANKQFAE--EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMP  339 (447)
Q Consensus       263 a~~~~~~~~~--~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~  339 (447)
                      +.........  ...+..|+|||.+....++.++|+|||||++|+|++ |..||...+      .......+.   ..  
T Consensus       159 ~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~------~~~~~~~~~---~~--  227 (270)
T cd05047         159 SRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT------CAELYEKLP---QG--  227 (270)
T ss_pred             ccccchhhhccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccC------HHHHHHHHh---CC--
Confidence            8533322111  223567999999988889999999999999999996 999996542      111111100   00  


Q ss_pred             HHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          340 RKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                          .....+...+.++.+++.+||..||.+|||+.+++.
T Consensus       228 ------------------------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  263 (270)
T cd05047         228 ------------------------------------YRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILV  263 (270)
T ss_pred             ------------------------------------CCCCCCCcCCHHHHHHHHHHcccChhhCCCHHHHHH
Confidence                                                000122234567889999999999999999999985

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=100.00  E-value=6.7e-34  Score=283.42  Aligned_cols=250  Identities=22%  Similarity=0.334  Sum_probs=191.6

Q ss_pred             CCceEEEEeecccCceEEEEEEeCC-------CCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTR-------TSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLID  105 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~-------~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~  105 (447)
                      ..+|++.+.||+|+||.||+|++..       ....||+|+++..  ....+.+.+|+++++.+.     .|+||+++++
T Consensus        11 ~~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~~iv~~~~   85 (334)
T cd05100          11 RTRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIG-----KHKNIINLLG   85 (334)
T ss_pred             HhHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhc-----CCCCeeeeeE
Confidence            4689999999999999999997643       2347899987753  233567889999999885     6899999999


Q ss_pred             cccccCCCcceEEEEEecc-cccHHHHHHhhc--------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccC
Q 013220          106 HFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSR--------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDL  170 (447)
Q Consensus       106 ~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~--------------~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Di  170 (447)
                      .+...    ...+++|||+ +++|.+++....              ...++...+..++.|++.||+|||++ ||+||||
T Consensus        86 ~~~~~----~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~-givH~dl  160 (334)
T cd05100          86 ACTQD----GPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQ-KCIHRDL  160 (334)
T ss_pred             EEccC----CceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHC-Ceecccc
Confidence            88753    5799999999 789998886432              12366778889999999999999996 9999999


Q ss_pred             CCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCC
Q 013220          171 KPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDG  250 (447)
Q Consensus       171 kp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (447)
                      ||+||++.                                                                        
T Consensus       161 kp~Nill~------------------------------------------------------------------------  168 (334)
T cd05100         161 AARNVLVT------------------------------------------------------------------------  168 (334)
T ss_pred             ccceEEEc------------------------------------------------------------------------
Confidence            99999993                                                                        


Q ss_pred             cccceeEeecCccccccccc-----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCc
Q 013220          251 IDMRCKVVDFGNACRANKQF-----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCED  324 (447)
Q Consensus       251 ~~~~~kL~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~  324 (447)
                      ....++|+|||++.......     ....++..|+|||.+.+..++.++|||||||++|+|++ |..||...+      .
T Consensus       169 ~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~------~  242 (334)
T cd05100         169 EDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIP------V  242 (334)
T ss_pred             CCCcEEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCC------H
Confidence            34579999999986543221     11223467999999998889999999999999999998 888886542      1


Q ss_pred             hHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC
Q 013220          325 EDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP  404 (447)
Q Consensus       325 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp  404 (447)
                      ......+.   ..                                      .....+...+..+.+|+.+||+.+|++||
T Consensus       243 ~~~~~~~~---~~--------------------------------------~~~~~~~~~~~~l~~li~~cl~~~p~~Rp  281 (334)
T cd05100         243 EELFKLLK---EG--------------------------------------HRMDKPANCTHELYMIMRECWHAVPSQRP  281 (334)
T ss_pred             HHHHHHHH---cC--------------------------------------CCCCCCCCCCHHHHHHHHHHcccChhhCc
Confidence            11111110   00                                      00112233456888999999999999999


Q ss_pred             ChHHHhcCc
Q 013220          405 TAQQCLQHP  413 (447)
Q Consensus       405 ta~elL~hp  413 (447)
                      |+.+++++-
T Consensus       282 s~~ell~~l  290 (334)
T cd05100         282 TFKQLVEDL  290 (334)
T ss_pred             CHHHHHHHH
Confidence            999999874

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=1.2e-33  Score=271.05  Aligned_cols=237  Identities=21%  Similarity=0.364  Sum_probs=182.9

Q ss_pred             eecccCceEEEEEEeC--CCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEE
Q 013220           43 KLGWGQFSIVWLAYDT--RTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLC  118 (447)
Q Consensus        43 ~lG~G~~g~Vy~a~~~--~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~  118 (447)
                      .||+|+||.||+|.+.  .++..||+|+.....  ...+.+.+|+++++.+      .|+||+++++.+..     ...+
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l------~h~~ii~~~~~~~~-----~~~~   70 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQL------DNPYIVRMIGVCEA-----EALM   70 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhc------CCCCeEEEEEEEcC-----CCeE
Confidence            4899999999999764  446679999876542  3345688999999999      78999999998643     4689


Q ss_pred             EEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcC
Q 013220          119 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE  197 (447)
Q Consensus       119 lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~  197 (447)
                      +||||+ +++|.+.+.... ..+++..+..++.|++.||+|||++ |++||||||+||++.                   
T Consensus        71 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dlkp~nil~~-------------------  129 (257)
T cd05115          71 LVMEMASGGPLNKFLSGKK-DEITVSNVVELMHQVSMGMKYLEGK-NFVHRDLAARNVLLV-------------------  129 (257)
T ss_pred             EEEEeCCCCCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhc-CeeecccchheEEEc-------------------
Confidence            999999 788888775432 4589999999999999999999996 999999999999993                   


Q ss_pred             CCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccc------
Q 013220          198 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA------  271 (447)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~------  271 (447)
                                                                           ....++|+|||++........      
T Consensus       130 -----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~  156 (257)
T cd05115         130 -----------------------------------------------------NQHYAKISDFGLSKALGADDSYYKARS  156 (257)
T ss_pred             -----------------------------------------------------CCCcEEeccCCccccccCCccceeccC
Confidence                                                                 356799999999864432211      


Q ss_pred             cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          272 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       272 ~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      ...++..|+|||.+.+..++.++|+|||||++|++++ |..||....      .......+.+  +              
T Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~------~~~~~~~~~~--~--------------  214 (257)
T cd05115         157 AGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMK------GPEVMSFIEQ--G--------------  214 (257)
T ss_pred             CCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCC------HHHHHHHHHC--C--------------
Confidence            1123568999999988888999999999999999996 999996542      1111111100  0              


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                               .....+...++++.++|.+||..||++||++.++++
T Consensus       215 -------------------------~~~~~~~~~~~~l~~li~~c~~~~~~~Rp~~~~i~~  250 (257)
T cd05115         215 -------------------------KRLDCPAECPPEMYALMKDCWIYKWEDRPNFAKVEE  250 (257)
T ss_pred             -------------------------CCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                                     011233445678999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=7.1e-35  Score=311.92  Aligned_cols=254  Identities=27%  Similarity=0.447  Sum_probs=196.3

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC--
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP--  112 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~--  112 (447)
                      .|...+.||+||||.||+++++-+|+.||||.+...  ......+.+|+.+|.++      +|||||+|+.+|.....  
T Consensus       480 DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArL------nHpNVVRYysAWVEs~~~~  553 (1351)
T KOG1035|consen  480 DFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARL------NHPNVVRYYSAWVESTAEL  553 (1351)
T ss_pred             hhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhc------CCcceeeeehhhhccCCcc
Confidence            477888899999999999999999999999976655  45566889999999999      89999999999865210  


Q ss_pred             ------------------------------------------------------------------------C-------
Q 013220          113 ------------------------------------------------------------------------N-------  113 (447)
Q Consensus       113 ------------------------------------------------------------------------~-------  113 (447)
                                                                                              +       
T Consensus       554 ~~~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~t  633 (1351)
T KOG1035|consen  554 TVLEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSNT  633 (1351)
T ss_pred             ccccccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCcccccccccccccccc
Confidence                                                                                    0       


Q ss_pred             --------------------------c--------ceEEEEEecccccHHH-HHHhhccCCCCHHHHHHHHHHHHHHHHH
Q 013220          114 --------------------------G--------QHLCMVLEFLGDSLLR-LIKYSRYKGLELNKVREICKYILTGLDY  158 (447)
Q Consensus       114 --------------------------~--------~~~~lvmE~~~~~L~~-~~~~~~~~~l~~~~~~~i~~qil~aL~~  158 (447)
                                                .        ..+||-||||..++.+ ++.++.. .-......+++++|++||+|
T Consensus       634 S~~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~-~~~~d~~wrLFreIlEGLaY  712 (1351)
T KOG1035|consen  634 SDSEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHF-NSQRDEAWRLFREILEGLAY  712 (1351)
T ss_pred             cccCCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhccc-chhhHHHHHHHHHHHHHHHH
Confidence                                      0        4589999999655554 4444332 11467889999999999999


Q ss_pred             HHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 013220          159 LHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGG  238 (447)
Q Consensus       159 lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (447)
                      +|+. |||||||||.||++                                                             
T Consensus       713 IH~~-giIHRDLKP~NIFL-------------------------------------------------------------  730 (1351)
T KOG1035|consen  713 IHDQ-GIIHRDLKPRNIFL-------------------------------------------------------------  730 (1351)
T ss_pred             HHhC-ceeeccCCcceeEE-------------------------------------------------------------
Confidence            9995 99999999999999                                                             


Q ss_pred             CCCCCCCccCCCcccceeEeecCcccccc---------------------cccccCCCCCCccChHHhhcCC---CCccc
Q 013220          239 IELPKPERCLDGIDMRCKVVDFGNACRAN---------------------KQFAEEIQTRQYRAPEVILRAG---YSFSV  294 (447)
Q Consensus       239 ~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~---------------------~~~~~~~gt~~y~aPE~l~~~~---~~~~~  294 (447)
                                 +....|||+|||+|+...                     ...+..+||.-|+|||++.+..   |+.|+
T Consensus       731 -----------d~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~Ki  799 (1351)
T KOG1035|consen  731 -----------DSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNSKI  799 (1351)
T ss_pred             -----------cCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhcccccccccchh
Confidence                       446779999999996510                     1245568999999999998754   99999


Q ss_pred             hhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHh-CCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHH
Q 013220          295 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI-GKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRL  373 (447)
Q Consensus       295 DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (447)
                      ||||||||+++|+   +||.        +...-...+..+. |..|.+                                
T Consensus       800 DmYSLGIVlFEM~---yPF~--------TsMERa~iL~~LR~g~iP~~--------------------------------  836 (1351)
T KOG1035|consen  800 DMYSLGIVLFEML---YPFG--------TSMERASILTNLRKGSIPEP--------------------------------  836 (1351)
T ss_pred             hhHHHHHHHHHHh---ccCC--------chHHHHHHHHhcccCCCCCC--------------------------------
Confidence            9999999999999   4564        2334444444332 222221                                


Q ss_pred             hhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccc
Q 013220          374 LVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       374 ~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~  417 (447)
                          .++..+....-..+|+.||+.||.+||||.|+|++.||-.
T Consensus       837 ----~~f~~~~~~~e~slI~~Ll~hdP~kRPtA~eLL~s~llpp  876 (1351)
T KOG1035|consen  837 ----ADFFDPEHPEEASLIRWLLSHDPSKRPTATELLNSELLPP  876 (1351)
T ss_pred             ----cccccccchHHHHHHHHHhcCCCccCCCHHHHhhccCCCc
Confidence                1122333445668999999999999999999999999984

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=6e-34  Score=275.61  Aligned_cols=260  Identities=23%  Similarity=0.315  Sum_probs=194.8

Q ss_pred             CceEEEEeecccCceEEEEEEeC----CCCeEEEEEEechhHH--hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDT----RTSSYVALKIQKSAAQ--FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~----~~~~~vaiK~~~~~~~--~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      ..|++.+.||+|+||.||+|+..    .++..||+|+++....  ....+.+|+++++.+      .|+||+++++++..
T Consensus         4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l------~~~~i~~~~~~~~~   77 (284)
T cd05038           4 RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTL------DHENIVKYKGVCEK   77 (284)
T ss_pred             hhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhC------CCCChheEEeeeec
Confidence            57889999999999999999854    3488999998876544  366889999999998      78899999988765


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                      .  .+...+++|||+ +++|.+++.... ..+++..+..++.|++.||+|||++ ||+|+||||+||++           
T Consensus        78 ~--~~~~~~lv~e~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~l~~aL~~lH~~-~i~H~dl~p~nil~-----------  142 (284)
T cd05038          78 P--GGRSLRLIMEYLPSGSLRDYLQRHR-DQINLKRLLLFSSQICKGMDYLGSQ-RYIHRDLAARNILV-----------  142 (284)
T ss_pred             C--CCCceEEEEecCCCCCHHHHHHhCc-cccCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHhEEE-----------
Confidence            3  356899999999 889988886433 2488899999999999999999996 99999999999999           


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                   +.+..++|+|||.+.....
T Consensus       143 -------------------------------------------------------------~~~~~~~l~dfg~~~~~~~  161 (284)
T cd05038         143 -------------------------------------------------------------ESEDLVKISDFGLAKVLPE  161 (284)
T ss_pred             -------------------------------------------------------------cCCCCEEEccccccccccc
Confidence                                                                         3356799999999976542


Q ss_pred             ccc------cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh
Q 013220          269 QFA------EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  342 (447)
Q Consensus       269 ~~~------~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (447)
                      ...      ...++..|+|||.+.+..++.++|+|||||++|+|++|..||........           ...+..... 
T Consensus       162 ~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~-----------~~~~~~~~~-  229 (284)
T cd05038         162 DKDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFL-----------RMIGIAQGQ-  229 (284)
T ss_pred             CCcceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccchhc-----------ccccccccc-
Confidence            211      12345679999999888899999999999999999999999865421110           000000000 


Q ss_pred             hhCCCCccchhcccchhhhhhhcccCchhHHhhhh--cCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDK--YRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                           .         .        ...+...+...  ...+...+.++.+|+.+||+.+|++|||+.|+++
T Consensus       230 -----~---------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~  278 (284)
T cd05038         230 -----M---------I--------VTRLLELLKEGERLPRPPSCPDEVYDLMKLCWEAEPQDRPSFADLIL  278 (284)
T ss_pred             -----c---------c--------HHHHHHHHHcCCcCCCCccCCHHHHHHHHHHhccChhhCCCHHHHHH
Confidence                 0         0        00000000000  1122334568999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=8.8e-34  Score=273.12  Aligned_cols=245  Identities=19%  Similarity=0.325  Sum_probs=190.1

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCe---EEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSS---YVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~---~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      +.|++.+.||.|+||.||+|.+..++.   .||+|+++..  ......+..|+.+++.+      .|+||+++++.+.. 
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l------~h~ni~~~~~~~~~-   76 (269)
T cd05065           4 SCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQF------DHPNIIHLEGVVTK-   76 (269)
T ss_pred             HHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhC------CCcCcceEEEEECC-
Confidence            569999999999999999998876654   6999987653  33456788999999998      78999999998864 


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                         +...++||||+ +++|.+++.... ..+++..+..++.|++.||+|||++ |++|+||||+||++            
T Consensus        77 ---~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~l~~al~~lH~~-g~~H~dl~p~nili------------  139 (269)
T cd05065          77 ---SRPVMIITEFMENGALDSFLRQND-GQFTVIQLVGMLRGIAAGMKYLSEM-NYVHRDLAARNILV------------  139 (269)
T ss_pred             ---CCceEEEEecCCCCcHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHHC-CEeecccChheEEE------------
Confidence               46789999999 778888876432 4578899999999999999999996 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                  +....++|+|||.+......
T Consensus       140 ------------------------------------------------------------~~~~~~kl~dfg~~~~~~~~  159 (269)
T cd05065         140 ------------------------------------------------------------NSNLVCKVSDFGLSRFLEDD  159 (269)
T ss_pred             ------------------------------------------------------------cCCCcEEECCCccccccccC
Confidence                                                                        33567999999988644321


Q ss_pred             cc-----cCC---CCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCH
Q 013220          270 FA-----EEI---QTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  340 (447)
Q Consensus       270 ~~-----~~~---gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~  340 (447)
                      ..     ...   .+..|+|||.+.+..++.++|+|||||++|++++ |..||...+      .......+.   ...  
T Consensus       160 ~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~------~~~~~~~i~---~~~--  228 (269)
T cd05065         160 TSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMS------NQDVINAIE---QDY--  228 (269)
T ss_pred             ccccccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCC------HHHHHHHHH---cCC--
Confidence            11     111   1347999999998889999999999999999886 999996542      111111110   000  


Q ss_pred             HhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          341 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                          ..+.+...+..+.+++.+||..+|.+||++.+++.
T Consensus       229 ------------------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  263 (269)
T cd05065         229 ------------------------------------RLPPPMDCPTALHQLMLDCWQKDRNARPKFGQIVS  263 (269)
T ss_pred             ------------------------------------cCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                                                01122334567889999999999999999999985

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=100.00  E-value=1e-33  Score=274.29  Aligned_cols=249  Identities=19%  Similarity=0.279  Sum_probs=193.1

Q ss_pred             cCCceEEEEeecccCceEEEEEEeCC----CCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           34 NGGRYIAQRKLGWGQFSIVWLAYDTR----TSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        34 ~~~~y~l~~~lG~G~~g~Vy~a~~~~----~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      .+.+|++.+.||+|+||.||+|.+..    ++..|++|.++..  ......+.+|+++++.+      +|+||+++++++
T Consensus         4 ~~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l------~h~ni~~~~~~~   77 (280)
T cd05043           4 SRDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGL------SHQNILPILHVC   77 (280)
T ss_pred             chhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhC------CCCCCCeEEEEE
Confidence            35789999999999999999998765    3688999987643  23356788899999999      899999999976


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhcc------CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeec
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSRY------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVST  180 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~------~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~  180 (447)
                      ...   +...+++++|+ +++|.+++.....      ..+++..+..++.|++.||+|||++ +++|+||||+||++.  
T Consensus        78 ~~~---~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~-~i~H~di~p~nil~~--  151 (280)
T cd05043          78 IED---GEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKR-GVIHKDIAARNCVID--  151 (280)
T ss_pred             ecC---CCCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHC-CEeecccCHhhEEEc--
Confidence            642   35789999999 7889888765322      3488999999999999999999996 999999999999993  


Q ss_pred             CCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeec
Q 013220          181 IDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDF  260 (447)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Df  260 (447)
                                                                                            ....++|+||
T Consensus       152 ----------------------------------------------------------------------~~~~~kl~d~  161 (280)
T cd05043         152 ----------------------------------------------------------------------EELQVKITDN  161 (280)
T ss_pred             ----------------------------------------------------------------------CCCcEEECCC
Confidence                                                                                  3567999999


Q ss_pred             Cccccccccc-----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHH
Q 013220          261 GNACRANKQF-----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMEL  334 (447)
Q Consensus       261 g~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~  334 (447)
                      |++.......     ....++..|+|||.+.+..++.++|||||||++|++++ |..||...+.       ..+..  .+
T Consensus       162 g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~-------~~~~~--~~  232 (280)
T cd05043         162 ALSRDLFPMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDP-------FEMAA--YL  232 (280)
T ss_pred             CCcccccCCceEEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCCH-------HHHHH--HH
Confidence            9986543221     11235678999999998889999999999999999998 9999965321       11111  00


Q ss_pred             hCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          335 IGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       335 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                      ....                                      ....+...++++.+++.+||..||++|||+.++++
T Consensus       233 ~~~~--------------------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~  271 (280)
T cd05043         233 KDGY--------------------------------------RLAQPINCPDELFAVMACCWALDPEERPSFSQLVQ  271 (280)
T ss_pred             HcCC--------------------------------------CCCCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence            0000                                      00111223568899999999999999999999984

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=100.00  E-value=8.4e-34  Score=273.94  Aligned_cols=249  Identities=21%  Similarity=0.360  Sum_probs=192.4

Q ss_pred             CCceEEEEeecccCceEEEEEEeCC-----CCeEEEEEEechhHH--hHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTR-----TSSYVALKIQKSAAQ--FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~-----~~~~vaiK~~~~~~~--~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      ..+|++.+.||.|+||.||+|+...     ..+.|++|.......  ....+.+|+++++.+      +|+||+++++.+
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~   77 (275)
T cd05046           4 RSNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKL------SHKNVVRLLGLC   77 (275)
T ss_pred             hHhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhc------CCcceeeeEEEE
Confidence            3679999999999999999998643     357899997765432  356788999999999      789999999987


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhcc-------CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeee
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSRY-------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVS  179 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~-------~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~  179 (447)
                      ..    ....++||||+ +++|.+++.....       ..+++..+..++.|++.||+|||++ ||+|+||||+||++. 
T Consensus        78 ~~----~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~-~i~H~dlkp~Nili~-  151 (275)
T cd05046          78 RE----AEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNA-RFVHRDLAARNCLVS-  151 (275)
T ss_pred             CC----CCcceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhc-CcccCcCccceEEEe-
Confidence            64    36789999999 7899988865431       1488999999999999999999996 999999999999993 


Q ss_pred             cCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEee
Q 013220          180 TIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVD  259 (447)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~D  259 (447)
                                                                                             ....++++|
T Consensus       152 -----------------------------------------------------------------------~~~~~~l~~  160 (275)
T cd05046         152 -----------------------------------------------------------------------SQREVKVSL  160 (275)
T ss_pred             -----------------------------------------------------------------------CCCcEEEcc
Confidence                                                                                   356789999


Q ss_pred             cCcccccccc----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHH
Q 013220          260 FGNACRANKQ----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMEL  334 (447)
Q Consensus       260 fg~a~~~~~~----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~  334 (447)
                      ||++......    .....++..|+|||.+.+..++.++|||||||++|+|++ |..||....      ....+..+.  
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~------~~~~~~~~~--  232 (275)
T cd05046         161 LSLSKDVYNSEYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLS------DEEVLNRLQ--  232 (275)
T ss_pred             cccccccCcccccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccc------hHHHHHHHH--
Confidence            9988543211    122345677999999988888899999999999999998 788886432      111111100  


Q ss_pred             hCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          335 IGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       335 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                      .+..+                                      ...+...+..+.+++.+||+.||++|||+.|++..
T Consensus       233 ~~~~~--------------------------------------~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~~l~~  272 (275)
T cd05046         233 AGKLE--------------------------------------LPVPEGCPSRLYKLMTRCWAVNPKDRPSFSELVSA  272 (275)
T ss_pred             cCCcC--------------------------------------CCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHH
Confidence            00000                                      01122346689999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=5.5e-34  Score=272.16  Aligned_cols=242  Identities=22%  Similarity=0.324  Sum_probs=184.0

Q ss_pred             EeecccCceEEEEEEeCCCC----------eEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           42 RKLGWGQFSIVWLAYDTRTS----------SYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~----------~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      +.||+|+||.||+|.+..++          ..+++|++.........+.+|+++++.+      +|+||+++++++..  
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~--   72 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQL------SHKHLVKLYGVCVR--   72 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhhHHHHHHHHHHHHcC------CCcchhheeeEEec--
Confidence            46899999999999887666          4588887776554467788899999988      88999999998764  


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                         ...++||||+ +++|.+++.... ..++...+..++.|++.||+|||++ ||+|+||||+||++......       
T Consensus        73 ---~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~-~i~H~dlkp~Nill~~~~~~-------  140 (259)
T cd05037          73 ---DENIMVEEYVKFGPLDVFLHREK-NNVSLHWKLDVAKQLASALHYLEDK-KLVHGNVCGKNILVARYGLN-------  140 (259)
T ss_pred             ---CCcEEEEEcCCCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHhhC-CeecccCccceEEEecCccc-------
Confidence               3568999999 888988876543 2588999999999999999999996 99999999999999542100       


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF  270 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~  270 (447)
                                                                                +.....++|+|||.+..... .
T Consensus       141 ----------------------------------------------------------~~~~~~~kl~Dfg~a~~~~~-~  161 (259)
T cd05037         141 ----------------------------------------------------------EGYVPFIKLSDPGIPITVLS-R  161 (259)
T ss_pred             ----------------------------------------------------------cCCceeEEeCCCCccccccc-c
Confidence                                                                      01233699999999875443 2


Q ss_pred             ccCCCCCCccChHHhhcC--CCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          271 AEEIQTRQYRAPEVILRA--GYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~--~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                      ....++..|+|||.+.+.  .++.++|||||||++|+|++ |..||...+..       .......              
T Consensus       162 ~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~~~-------~~~~~~~--------------  220 (259)
T cd05037         162 EERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLSSS-------EKERFYQ--------------  220 (259)
T ss_pred             cccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCCch-------hHHHHHh--------------
Confidence            334567889999999876  68899999999999999998 57777544210       0000000              


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                  .....+......+.++|.+||+.+|++|||+.++++
T Consensus       221 ----------------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  256 (259)
T cd05037         221 ----------------------------DQHRLPMPDCAELANLINQCWTYDPTKRPSFRAILR  256 (259)
T ss_pred             ----------------------------cCCCCCCCCchHHHHHHHHHhccChhhCCCHHHHHH
Confidence                                        000011111258889999999999999999999985

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=8.6e-34  Score=273.06  Aligned_cols=246  Identities=20%  Similarity=0.316  Sum_probs=190.7

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCC---eEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTS---SYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~---~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      .++|++.+.||+|+||.||+|++..++   ..+|+|.++..  ......+.+|+++++.+      +|+||+++++++..
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~   76 (267)
T cd05066           3 ASCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQF------DHPNIIHLEGVVTK   76 (267)
T ss_pred             HHHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhC------CCCCcceEEEEEec
Confidence            368999999999999999999876443   47999987643  23345788899999998      78999999998864


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                          ++..++||||+ +++|.+.+.... ..++...+..++.|++.||++||+. |++|+||||+||++           
T Consensus        77 ----~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~-~i~h~dlkp~nili-----------  139 (267)
T cd05066          77 ----SKPVMIVTEYMENGSLDAFLRKHD-GQFTVIQLVGMLRGIASGMKYLSDM-GYVHRDLAARNILV-----------  139 (267)
T ss_pred             ----CCccEEEEEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CEeehhhchhcEEE-----------
Confidence                36899999999 788988886533 3578899999999999999999996 99999999999999           


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                   +.+..++|+|||.+.....
T Consensus       140 -------------------------------------------------------------~~~~~~~l~dfg~~~~~~~  158 (267)
T cd05066         140 -------------------------------------------------------------NSNLVCKVSDFGLSRVLED  158 (267)
T ss_pred             -------------------------------------------------------------CCCCeEEeCCCCccccccc
Confidence                                                                         3356799999999865433


Q ss_pred             ccc------cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          269 QFA------EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       269 ~~~------~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                      ...      ...++..|+|||.+.+..++.++|+|||||++|++++ |..||...+.      ......+.+   ..   
T Consensus       159 ~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~------~~~~~~~~~---~~---  226 (267)
T cd05066         159 DPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSN------QDVIKAIEE---GY---  226 (267)
T ss_pred             ccceeeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCCH------HHHHHHHhC---CC---
Confidence            211      1122457999999998889999999999999999886 9999965421      111111100   00   


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                         +...+...+..+.+++.+||+.+|.+|||+.++++
T Consensus       227 -----------------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  261 (267)
T cd05066         227 -----------------------------------RLPAPMDCPAALHQLMLDCWQKDRNERPKFEQIVS  261 (267)
T ss_pred             -----------------------------------cCCCCCCCCHHHHHHHHHHcccCchhCCCHHHHHH
Confidence                                               00112234568889999999999999999999874

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=100.00  E-value=1.3e-33  Score=274.80  Aligned_cols=247  Identities=19%  Similarity=0.329  Sum_probs=190.3

Q ss_pred             CCceEEEEeecccCceEEEEEEeC-----CCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDT-----RTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~-----~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      .++|++.++||.|+||.||+|.+.     .++..||+|++....  .....+.+|+++++.+      +|++|+++++++
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l------~h~~iv~~~~~~   77 (288)
T cd05050           4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEF------DHPNIVKLLGVC   77 (288)
T ss_pred             hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhc------CCCchheEEEEE
Confidence            367999999999999999999864     367899999876432  3345688899999999      789999999987


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhc--------------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcc
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSR--------------------YKGLELNKVREICKYILTGLDYLHRELGII  166 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~--------------------~~~l~~~~~~~i~~qil~aL~~lH~~~gIi  166 (447)
                      ..    +...+++|||+ +++|..++....                    ...+++..+..++.|++.||+|||++ +++
T Consensus        78 ~~----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~-~i~  152 (288)
T cd05050          78 AV----GKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSER-KFV  152 (288)
T ss_pred             cC----CCccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC-Cee
Confidence            74    36789999999 789988875321                    12367788899999999999999997 999


Q ss_pred             cccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCc
Q 013220          167 HTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPER  246 (447)
Q Consensus       167 H~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (447)
                      ||||||+||++                                                                     
T Consensus       153 H~dl~p~nil~---------------------------------------------------------------------  163 (288)
T cd05050         153 HRDLATRNCLV---------------------------------------------------------------------  163 (288)
T ss_pred             cccccHhheEe---------------------------------------------------------------------
Confidence            99999999999                                                                     


Q ss_pred             cCCCcccceeEeecCcccccccc-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCC
Q 013220          247 CLDGIDMRCKVVDFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQG  320 (447)
Q Consensus       247 ~~~~~~~~~kL~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~  320 (447)
                         +....++|+|||.+......     ......+..|+|||.+.+..++.++|+|||||++|+|++ |..||.+.+   
T Consensus       164 ---~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~---  237 (288)
T cd05050         164 ---GENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMA---  237 (288)
T ss_pred             ---cCCCceEECccccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCC---
Confidence               33567999999998644322     112234567999999998889999999999999999997 888886542   


Q ss_pred             CCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCC
Q 013220          321 FCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTP  400 (447)
Q Consensus       321 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP  400 (447)
                         ......   .+...                                      .....+...+..+.+||.+||+.||
T Consensus       238 ---~~~~~~---~~~~~--------------------------------------~~~~~~~~~~~~l~~li~~~l~~~p  273 (288)
T cd05050         238 ---HEEVIY---YVRDG--------------------------------------NVLSCPDNCPLELYNLMRLCWSKLP  273 (288)
T ss_pred             ---HHHHHH---HHhcC--------------------------------------CCCCCCCCCCHHHHHHHHHHcccCc
Confidence               111111   00000                                      0001223346689999999999999


Q ss_pred             CCCCChHHHhc
Q 013220          401 EKRPTAQQCLQ  411 (447)
Q Consensus       401 ~kRpta~elL~  411 (447)
                      ++|||+.|+++
T Consensus       274 ~~Rpt~~el~~  284 (288)
T cd05050         274 SDRPSFASINR  284 (288)
T ss_pred             ccCCCHHHHHH
Confidence            99999999874

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=4.1e-35  Score=264.08  Aligned_cols=285  Identities=22%  Similarity=0.410  Sum_probs=216.4

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      ++|++.+++|.|.++.||-|....+++.++||+++....  ..+.+|+.+|+.|.     +++||+++++...+.  ...
T Consensus        38 ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVkk--kKIkREikIL~nL~-----gg~NIi~L~DiV~Dp--~Sk  108 (338)
T KOG0668|consen   38 DDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPVKK--KKIKREIKILQNLR-----GGPNIIKLLDIVKDP--ESK  108 (338)
T ss_pred             chHHHHHHHcCccHhhHhcccccCCCceEEEeeechHHH--HHHHHHHHHHHhcc-----CCCCeeehhhhhcCc--ccc
Confidence            579999999999999999999999999999999987654  67899999999996     799999999998876  456


Q ss_pred             eEEEEEeccc-ccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          116 HLCMVLEFLG-DSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       116 ~~~lvmE~~~-~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      ...+++||+. .++..++     ..++...++.++++++.||.|||+ +||.|||+||.|+|+.+.              
T Consensus       109 tpaLiFE~v~n~Dfk~ly-----~tl~d~dIryY~~elLkALdyCHS-~GImHRDVKPhNvmIdh~--------------  168 (338)
T KOG0668|consen  109 TPSLIFEYVNNTDFKQLY-----PTLTDYDIRYYIYELLKALDYCHS-MGIMHRDVKPHNVMIDHE--------------  168 (338)
T ss_pred             CchhHhhhhccccHHHHh-----hhhchhhHHHHHHHHHHHHhHHHh-cCcccccCCcceeeechh--------------
Confidence            7889999994 4554444     336777899999999999999999 599999999999999542              


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc--cccc
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAE  272 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~--~~~~  272 (447)
                                                                               .-.++|+|||+|-....  .-.-
T Consensus       169 ---------------------------------------------------------~rkLrlIDWGLAEFYHp~~eYnV  191 (338)
T KOG0668|consen  169 ---------------------------------------------------------LRKLRLIDWGLAEFYHPGKEYNV  191 (338)
T ss_pred             ---------------------------------------------------------hceeeeeecchHhhcCCCceeee
Confidence                                                                     34689999999954432  2233


Q ss_pred             CCCCCCccChHHhhcCC-CCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH-hh-hCCCCc
Q 013220          273 EIQTRQYRAPEVILRAG-YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK-IA-IGGAQS  349 (447)
Q Consensus       273 ~~gt~~y~aPE~l~~~~-~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~-~~~~~~  349 (447)
                      ++-+.+|--||.+.... |+..-|+|||||+++.|+..+-||....     .+.+++-.+.+++|+..-. ++ +-....
T Consensus       192 RVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~-----dN~DQLVkIakVLGt~el~~Yl~KY~i~L  266 (338)
T KOG0668|consen  192 RVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGH-----DNYDQLVKIAKVLGTDELYAYLNKYQIDL  266 (338)
T ss_pred             eeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCC-----CCHHHHHHHHHHhChHHHHHHHHHHccCC
Confidence            46788999999998754 7889999999999999999999987553     5778888888888875422 11 111111


Q ss_pred             cchhcc-cchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          350 KDYFDR-HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       350 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                      .+-|+. -++-.+.      .+...+....  -.-.++++.|||.++|..|..+|+||+|++.||||....
T Consensus       267 dp~~~~i~~~~~rk------~w~~Fi~~~n--~hl~~peaiDlldklLrYDHqeRlTakEam~HpyF~~~~  329 (338)
T KOG0668|consen  267 DPQFEDILGRHSRK------PWSRFINSEN--QHLVSPEAIDLLDKLLRYDHQERLTAKEAMAHPYFAPVR  329 (338)
T ss_pred             ChhHhhHhhccccc------cHHHhCCccc--cccCChHHHHHHHHHHhhccccccchHHHhcCchHHHHH
Confidence            111111 0010011      1222211111  112356889999999999999999999999999998754

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=6.4e-34  Score=275.71  Aligned_cols=243  Identities=21%  Similarity=0.296  Sum_probs=180.2

Q ss_pred             eecccCceEEEEEEeCC------------------------CCeEEEEEEechhHH-hHHHHHHHHHHHHHhhcCCCCCc
Q 013220           43 KLGWGQFSIVWLAYDTR------------------------TSSYVALKIQKSAAQ-FAQAALHEIEVLSAVADGDPSNE   97 (447)
Q Consensus        43 ~lG~G~~g~Vy~a~~~~------------------------~~~~vaiK~~~~~~~-~~~~~~~E~~~l~~l~~~~~~~~   97 (447)
                      +||+|+||.||+|....                        ....|++|++..... ....+.+|+.+++.+      +|
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l------~h   75 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQV------SH   75 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcC------CC
Confidence            68999999999996421                        124688998765432 345677888888888      89


Q ss_pred             ceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeE
Q 013220           98 KCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL  176 (447)
Q Consensus        98 ~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nil  176 (447)
                      +||+++++++...    ...++||||+ +++|...+... ...+++..+..++.|++.||+|||++ ||+||||||+||+
T Consensus        76 ~niv~~~~~~~~~----~~~~lv~ey~~~g~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~-~iiH~dlkp~Nil  149 (274)
T cd05076          76 IHLAFVHGVCVRG----SENIMVEEFVEHGPLDVCLRKE-KGRVPVAWKITVAQQLASALSYLEDK-NLVHGNVCAKNIL  149 (274)
T ss_pred             CCeeeEEEEEEeC----CceEEEEecCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHcC-CccCCCCCcccEE
Confidence            9999999988753    5789999999 77787776542 24588999999999999999999997 9999999999999


Q ss_pred             eeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCccccee
Q 013220          177 LVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCK  256 (447)
Q Consensus       177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  256 (447)
                      +......                                                                 +.....++
T Consensus       150 l~~~~~~-----------------------------------------------------------------~~~~~~~k  164 (274)
T cd05076         150 LARLGLA-----------------------------------------------------------------EGTSPFIK  164 (274)
T ss_pred             EeccCcc-----------------------------------------------------------------cCccceee
Confidence            9542100                                                                 01123589


Q ss_pred             EeecCcccccccccccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHh-hCCCCCCCCCCCCCCCchHHHHHHHHH
Q 013220          257 VVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELA-TGDMLFAPKSGQGFCEDEDHLALMMEL  334 (447)
Q Consensus       257 L~Dfg~a~~~~~~~~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~-~g~~Pf~~~~~~~~~~~~~~~~~~~~~  334 (447)
                      ++|||.+..... .....++..|+|||.+.+ ..++.++|+|||||++|+++ +|..||......       ....... 
T Consensus       165 l~d~g~~~~~~~-~~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~-------~~~~~~~-  235 (274)
T cd05076         165 LSDPGVSFTALS-REERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPS-------EKERFYE-  235 (274)
T ss_pred             ecCCcccccccc-ccccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccChH-------HHHHHHH-
Confidence            999998754322 223467888999999876 45789999999999999984 789998654211       1011100 


Q ss_pred             hCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          335 IGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       335 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                               .....+......+.++|.+||+.+|++|||++++|++
T Consensus       236 -----------------------------------------~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~il~~  272 (274)
T cd05076         236 -----------------------------------------KKHRLPEPSCKELATLISQCLTYEPTQRPSFRTILRD  272 (274)
T ss_pred             -----------------------------------------hccCCCCCCChHHHHHHHHHcccChhhCcCHHHHHHh
Confidence                                                     0111222234578899999999999999999999975

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=100.00  E-value=9.2e-34  Score=300.20  Aligned_cols=278  Identities=19%  Similarity=0.236  Sum_probs=177.6

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCC----CeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRT----SSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~----~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      .++|.+.++||+|+||.||+|++..+    +..||+|.+.....      .|..+...+.+.   .+.+++.++..|...
T Consensus       131 ~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~------~e~~~~e~l~~~---~~~~~~~~~~~~~~~  201 (566)
T PLN03225        131 KDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGA------VEIWMNERVRRA---CPNSCADFVYGFLEP  201 (566)
T ss_pred             cCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccch------hHHHHHHHHHhh---chhhHHHHHHhhhcc
Confidence            36899999999999999999999888    89999997654321      122222222111   111222222222211


Q ss_pred             --CCCcceEEEEEecc-cccHHHHHHhhccC------------------CCCHHHHHHHHHHHHHHHHHHHhhCCccccc
Q 013220          111 --GPNGQHLCMVLEFL-GDSLLRLIKYSRYK------------------GLELNKVREICKYILTGLDYLHRELGIIHTD  169 (447)
Q Consensus       111 --~~~~~~~~lvmE~~-~~~L~~~~~~~~~~------------------~l~~~~~~~i~~qil~aL~~lH~~~gIiH~D  169 (447)
                        ...+...++||||+ +++|.+++......                  ......+..++.|++.||+|||++ ||+|||
T Consensus       202 ~~~~~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~-gIiHRD  280 (566)
T PLN03225        202 VSSKKEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHST-GIVHRD  280 (566)
T ss_pred             cccccCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHC-CEEeCc
Confidence              12456899999999 77888877543210                  012334668999999999999996 999999


Q ss_pred             CCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCC
Q 013220          170 LKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLD  249 (447)
Q Consensus       170 ikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (447)
                      |||+|||+..                                                                      
T Consensus       281 LKP~NILl~~----------------------------------------------------------------------  290 (566)
T PLN03225        281 VKPQNIIFSE----------------------------------------------------------------------  290 (566)
T ss_pred             CCHHHEEEeC----------------------------------------------------------------------
Confidence            9999999942                                                                      


Q ss_pred             CcccceeEeecCccccccc----ccccCCCCCCccChHHhhcCC----------------------CCccchhHhHHHHH
Q 013220          250 GIDMRCKVVDFGNACRANK----QFAEEIQTRQYRAPEVILRAG----------------------YSFSVDMWSFACTA  303 (447)
Q Consensus       250 ~~~~~~kL~Dfg~a~~~~~----~~~~~~gt~~y~aPE~l~~~~----------------------~~~~~DiwSlGvil  303 (447)
                       ....+||+|||++.....    .....++++.|+|||.+....                      ++.++|||||||++
T Consensus       291 -~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DVwSlGviL  369 (566)
T PLN03225        291 -GSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIF  369 (566)
T ss_pred             -CCCcEEEEeCCCccccccccccCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCcccHHHHHHH
Confidence             235799999999964432    234457899999999764322                      33467999999999


Q ss_pred             HHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChh
Q 013220          304 FELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSET  383 (447)
Q Consensus       304 ~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (447)
                      |+|+++..|+..        .......++...+.....|.......                    ...-+.........
T Consensus       370 ~el~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~d~  421 (566)
T PLN03225        370 LQMAFPNLRSDS--------NLIQFNRQLKRNDYDLVAWRKLVEPR--------------------ASPDLRRGFEVLDL  421 (566)
T ss_pred             HHHHhCcCCCch--------HHHHHHHHHHhcCCcHHHHHHhhccc--------------------cchhhhhhhhhccc
Confidence            999987665421        22222222222222222221000000                    00000000011111


Q ss_pred             hHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          384 DAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       384 ~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                      ......+||.+||+.||++|||++|+|+||||+.....
T Consensus       422 ~~~~~~dLi~~mL~~dP~kR~ta~e~L~Hpff~~~~~~  459 (566)
T PLN03225        422 DGGAGWELLKSMMRFKGRQRISAKAALAHPYFDREGLL  459 (566)
T ss_pred             cchHHHHHHHHHccCCcccCCCHHHHhCCcCcCCCCcc
Confidence            23456699999999999999999999999999876543

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.8e-33  Score=272.65  Aligned_cols=247  Identities=21%  Similarity=0.322  Sum_probs=191.3

Q ss_pred             ccCCceEEEEeecccCceEEEEEEeCCCCe----EEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccc
Q 013220           33 FNGGRYIAQRKLGWGQFSIVWLAYDTRTSS----YVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDH  106 (447)
Q Consensus        33 ~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~----~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~  106 (447)
                      +..++|++.+.||+|+||+||+|.+..++.    .+|+|......  .....+.+|+++++.+      .|+||+++++.
T Consensus         4 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~   77 (279)
T cd05057           4 LKETELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASV------DHPHVVRLLGI   77 (279)
T ss_pred             cCHHHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhC------CCCCcceEEEE
Confidence            345789999999999999999998766544    68999876543  3346788899999998      78999999998


Q ss_pred             ccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCC
Q 013220          107 FKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK  185 (447)
Q Consensus       107 ~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~  185 (447)
                      +..     ...++||||+ +++|.+.+.... ..+++..+..++.|++.||+|||+. ||+|+||||+||++        
T Consensus        78 ~~~-----~~~~~v~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~-~i~H~di~p~nil~--------  142 (279)
T cd05057          78 CLS-----SQVQLITQLMPLGCLLDYVRNHK-DNIGSQYLLNWCVQIAKGMSYLEEK-RLVHRDLAARNVLV--------  142 (279)
T ss_pred             Eec-----CceEEEEecCCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhC-CEEecccCcceEEE--------
Confidence            764     4789999999 889998876533 3488999999999999999999996 99999999999999        


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccc
Q 013220          186 DPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR  265 (447)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~  265 (447)
                                                                                      +....++|+|||.+..
T Consensus       143 ----------------------------------------------------------------~~~~~~kL~dfg~~~~  158 (279)
T cd05057         143 ----------------------------------------------------------------KTPQHVKITDFGLAKL  158 (279)
T ss_pred             ----------------------------------------------------------------cCCCeEEECCCccccc
Confidence                                                                            3355799999999865


Q ss_pred             ccccccc-----CCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCC
Q 013220          266 ANKQFAE-----EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMP  339 (447)
Q Consensus       266 ~~~~~~~-----~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~  339 (447)
                      .......     ..++..|+|||.+....++.++|+|||||++|++++ |..||....       ...+........   
T Consensus       159 ~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~-------~~~~~~~~~~~~---  228 (279)
T cd05057         159 LDVDEKEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIP-------AVEIPDLLEKGE---  228 (279)
T ss_pred             ccCcccceecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCC-------HHHHHHHHhCCC---
Confidence            4322111     123567999999988889999999999999999998 999996542       111111111000   


Q ss_pred             HHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          340 RKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                           ....+...+..+.+++.+||..||.+|||+.++++
T Consensus       229 -------------------------------------~~~~~~~~~~~~~~~~~~~l~~~p~~Rp~~~~l~~  263 (279)
T cd05057         229 -------------------------------------RLPQPPICTIDVYMVLVKCWMIDAESRPTFKELIN  263 (279)
T ss_pred             -------------------------------------CCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence                                                 01122233457889999999999999999998864

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=1.2e-33  Score=275.43  Aligned_cols=245  Identities=24%  Similarity=0.357  Sum_probs=187.9

Q ss_pred             ceEEEEeecccCceEEEEEEeCC-----CCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTR-----TSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~-----~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      +|++.+.||+|+||.||+|++..     ....+++|.+....  .....+.+|+++++.+      .|+||+++++.+..
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~   74 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQV------NHPHVIKLYGACSQ   74 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhC------CCCCEeeEEEEEec
Confidence            48899999999999999998643     23578999776432  2345788899999998      78999999998875


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhc----------------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcc
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSR----------------------YKGLELNKVREICKYILTGLDYLHRELGII  166 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~----------------------~~~l~~~~~~~i~~qil~aL~~lH~~~gIi  166 (447)
                      .    ...+++|||+ +++|.+++....                      ...+++..+..++.|++.||+|||+. +|+
T Consensus        75 ~----~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~-~iv  149 (290)
T cd05045          75 D----GPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEM-KLV  149 (290)
T ss_pred             C----CCcEEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHC-Cee
Confidence            3    5789999999 788988875421                      12367888999999999999999996 999


Q ss_pred             cccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCc
Q 013220          167 HTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPER  246 (447)
Q Consensus       167 H~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (447)
                      ||||||+||++.                                                                    
T Consensus       150 H~dikp~nill~--------------------------------------------------------------------  161 (290)
T cd05045         150 HRDLAARNVLVA--------------------------------------------------------------------  161 (290)
T ss_pred             hhhhhhheEEEc--------------------------------------------------------------------
Confidence            999999999993                                                                    


Q ss_pred             cCCCcccceeEeecCccccccccc-----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCC
Q 013220          247 CLDGIDMRCKVVDFGNACRANKQF-----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQG  320 (447)
Q Consensus       247 ~~~~~~~~~kL~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~  320 (447)
                          ....++|+|||++.......     ....++..|+|||.+.+..++.++|||||||++|+|++ |..||.+..   
T Consensus       162 ----~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~---  234 (290)
T cd05045         162 ----EGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIA---  234 (290)
T ss_pred             ----CCCcEEeccccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCC---
Confidence                35679999999986432211     12234678999999988889999999999999999998 999996542   


Q ss_pred             CCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCC
Q 013220          321 FCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTP  400 (447)
Q Consensus       321 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP  400 (447)
                          ...+   .+.....                                     .....+...+.++.+|+.+||+.+|
T Consensus       235 ----~~~~---~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~i~~cl~~~P  270 (290)
T cd05045         235 ----PERL---FNLLKTG-------------------------------------YRMERPENCSEEMYNLMLTCWKQEP  270 (290)
T ss_pred             ----HHHH---HHHHhCC-------------------------------------CCCCCCCCCCHHHHHHHHHHccCCc
Confidence                1111   1110000                                     0011223446689999999999999


Q ss_pred             CCCCChHHHhc
Q 013220          401 EKRPTAQQCLQ  411 (447)
Q Consensus       401 ~kRpta~elL~  411 (447)
                      ++||+++++++
T Consensus       271 ~~Rp~~~~i~~  281 (290)
T cd05045         271 DKRPTFADISK  281 (290)
T ss_pred             ccCCCHHHHHH
Confidence            99999999974

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=1.7e-33  Score=287.34  Aligned_cols=249  Identities=20%  Similarity=0.306  Sum_probs=190.8

Q ss_pred             CceEEEEeecccCceEEEEEEeC-----CCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDT-----RTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~-----~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      ++|.+.++||+|+||.||+|++.     .++..||+|+++..  ....+.+.+|++++..+.     .|+||+++++++.
T Consensus        37 ~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~-----~H~niv~~~~~~~  111 (401)
T cd05107          37 DNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLG-----PHLNIVNLLGACT  111 (401)
T ss_pred             HHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcC-----CCCCeEEEEEEEc
Confidence            56889999999999999999853     35678999988754  223456888999999983     4999999999987


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhcc--------------------------------------------------
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSRY--------------------------------------------------  137 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~--------------------------------------------------  137 (447)
                      ..    ...++||||| +++|.+++.....                                                  
T Consensus       112 ~~----~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (401)
T cd05107         112 KG----GPIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESA  187 (401)
T ss_pred             cC----CCcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCcccc
Confidence            53    5799999999 8899988854311                                                  


Q ss_pred             ----------------------------------------------CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCC
Q 013220          138 ----------------------------------------------KGLELNKVREICKYILTGLDYLHRELGIIHTDLK  171 (447)
Q Consensus       138 ----------------------------------------------~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dik  171 (447)
                                                                    ..++...+..++.|++.||+|||+. +|+|||||
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~-~ivHrdlk  266 (401)
T cd05107         188 DYVPMQDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASK-NCVHRDLA  266 (401)
T ss_pred             CccchhcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcC-CcCcccCC
Confidence                                                          1255667788999999999999996 99999999


Q ss_pred             CCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCc
Q 013220          172 PENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGI  251 (447)
Q Consensus       172 p~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (447)
                      |+||++.                                                                        .
T Consensus       267 p~NiLl~------------------------------------------------------------------------~  274 (401)
T cd05107         267 ARNVLIC------------------------------------------------------------------------E  274 (401)
T ss_pred             cceEEEe------------------------------------------------------------------------C
Confidence            9999993                                                                        3


Q ss_pred             ccceeEeecCcccccccc-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCch
Q 013220          252 DMRCKVVDFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDE  325 (447)
Q Consensus       252 ~~~~kL~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~  325 (447)
                      ...++|+|||++......     .....++..|+|||.+.+..++.++|+|||||++|+|++ |..||.....      .
T Consensus       275 ~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~------~  348 (401)
T cd05107         275 GKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPM------N  348 (401)
T ss_pred             CCEEEEEecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCc------h
Confidence            457999999998653221     122356788999999988889999999999999999998 8899865421      1


Q ss_pred             HHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCC
Q 013220          326 DHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT  405 (447)
Q Consensus       326 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpt  405 (447)
                      ........  +.                                      .....+...+.++.+||.+||+.+|++||+
T Consensus       349 ~~~~~~~~--~~--------------------------------------~~~~~p~~~~~~l~~li~~cl~~~P~~RPs  388 (401)
T cd05107         349 EQFYNAIK--RG--------------------------------------YRMAKPAHASDEIYEIMQKCWEEKFEIRPD  388 (401)
T ss_pred             HHHHHHHH--cC--------------------------------------CCCCCCCCCCHHHHHHHHHHcCCChhHCcC
Confidence            11000000  00                                      001123344678999999999999999999


Q ss_pred             hHHHhcC
Q 013220          406 AQQCLQH  412 (447)
Q Consensus       406 a~elL~h  412 (447)
                      ++++++.
T Consensus       389 ~~ell~~  395 (401)
T cd05107         389 FSQLVHL  395 (401)
T ss_pred             HHHHHHH
Confidence            9999864

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=100.00  E-value=1.6e-33  Score=276.72  Aligned_cols=249  Identities=18%  Similarity=0.279  Sum_probs=191.0

Q ss_pred             cccCCceEEEEeecccCceEEEEEEeCCCCe----EEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecc
Q 013220           32 LFNGGRYIAQRKLGWGQFSIVWLAYDTRTSS----YVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLID  105 (447)
Q Consensus        32 ~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~----~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~  105 (447)
                      ++..++|+..+.||+|+||.||+|.+..++.    .||+|.+....  .....+.+|+.+++.+      +|+||+++++
T Consensus         3 ~~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l------~h~niv~~~~   76 (303)
T cd05110           3 ILKETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASM------DHPHLVRLLG   76 (303)
T ss_pred             ccchhhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhC------CCCCcccEEE
Confidence            4556789999999999999999998876665    57888776432  2234678899999988      7899999999


Q ss_pred             cccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCC
Q 013220          106 HFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       106 ~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~  184 (447)
                      .+...     ..+++|||+ +++|.+.+.... ..+++..+..++.|++.||+|||++ ||+|+||||+||++.      
T Consensus        77 ~~~~~-----~~~~v~e~~~~g~l~~~~~~~~-~~~~~~~~~~~~~qi~~~L~~LH~~-~ivH~dikp~Nill~------  143 (303)
T cd05110          77 VCLSP-----TIQLVTQLMPHGCLLDYVHEHK-DNIGSQLLLNWCVQIAKGMMYLEER-RLVHRDLAARNVLVK------  143 (303)
T ss_pred             EEcCC-----CceeeehhcCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHhhc-Ceeccccccceeeec------
Confidence            87642     467899999 788988876432 3578889999999999999999996 999999999999993      


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                        ....+||+|||.+.
T Consensus       144 ------------------------------------------------------------------~~~~~kL~Dfg~~~  157 (303)
T cd05110         144 ------------------------------------------------------------------SPNHVKITDFGLAR  157 (303)
T ss_pred             ------------------------------------------------------------------CCCceEEccccccc
Confidence                                                                              34569999999997


Q ss_pred             cccccc-----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCC
Q 013220          265 RANKQF-----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKM  338 (447)
Q Consensus       265 ~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~  338 (447)
                      ......     ....++..|+|||.+.+..++.++|||||||++|++++ |..||.+..       ......+.+.... 
T Consensus       158 ~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~-------~~~~~~~~~~~~~-  229 (303)
T cd05110         158 LLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIP-------TREIPDLLEKGER-  229 (303)
T ss_pred             cccCcccccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCC-------HHHHHHHHHCCCC-
Confidence            543221     12234678999999988889999999999999999997 889986542       1111111110000 


Q ss_pred             CHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          339 PRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                             ...+...+..+.+++.+||..+|++||+++++++.
T Consensus       230 ---------------------------------------~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~l~~~  264 (303)
T cd05110         230 ---------------------------------------LPQPPICTIDVYMVMVKCWMIDADSRPKFKELAAE  264 (303)
T ss_pred             ---------------------------------------CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                                                   00112234578899999999999999999998874

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=2.4e-34  Score=275.67  Aligned_cols=245  Identities=19%  Similarity=0.315  Sum_probs=182.4

Q ss_pred             EeecccCceEEEEEEeCCCC-------eEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           42 RKLGWGQFSIVWLAYDTRTS-------SYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~-------~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      +.||.|+||+||+|.+...+       ..+++|...... ...+.+.+|..+++.+      .|+||+++++.+...   
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~------~h~~iv~~~~~~~~~---   71 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQL------SHKHLVLNYGVCVCG---   71 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhC------CCCChhheeeEEEeC---
Confidence            46899999999999875543       348888765443 3345778899999888      889999999998753   


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                       ...++||||+ +++|..++.... ..+++..++.++.||+.||+|||++ ||+||||||+||++.......        
T Consensus        72 -~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~-~iiH~dlkp~nili~~~~~~~--------  140 (258)
T cd05078          72 -DESIMVQEYVKFGSLDTYLKKNK-NLINISWKLEVAKQLAWALHFLEDK-GLTHGNVCAKNVLLIREEDRK--------  140 (258)
T ss_pred             -CCcEEEEecCCCCcHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCccceEEEecccccc--------
Confidence             5789999999 788988876433 3578899999999999999999996 999999999999995421100        


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccccc
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAE  272 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~~  272 (447)
                                                                              ......++++|||.+..... ...
T Consensus       141 --------------------------------------------------------~~~~~~~~l~d~g~~~~~~~-~~~  163 (258)
T cd05078         141 --------------------------------------------------------TGNPPFIKLSDPGISITVLP-KEI  163 (258)
T ss_pred             --------------------------------------------------------cCCCceEEecccccccccCC-chh
Confidence                                                                    01123479999998864432 223


Q ss_pred             CCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCC-CCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          273 EIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGD-MLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       273 ~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~-~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      ..++..|+|||.+.+. .++.++|||||||++|+|++|. .||...+      .. .....                   
T Consensus       164 ~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~------~~-~~~~~-------------------  217 (258)
T cd05078         164 LLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSALD------SQ-KKLQF-------------------  217 (258)
T ss_pred             ccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhcc------HH-HHHHH-------------------
Confidence            4678899999999874 5789999999999999999984 5554321      00 00000                   


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                             ......++.....++.+||.+||+.||++|||++++++.
T Consensus       218 -----------------------~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  256 (258)
T cd05078         218 -----------------------YEDRHQLPAPKWTELANLINQCMDYEPDFRPSFRAIIRD  256 (258)
T ss_pred             -----------------------HHccccCCCCCcHHHHHHHHHHhccChhhCCCHHHHHHh
Confidence                                   011112333345678899999999999999999999864

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=100.00  E-value=5.6e-35  Score=283.88  Aligned_cols=341  Identities=23%  Similarity=0.331  Sum_probs=220.3

Q ss_pred             CceEEEEeecccCceEEEEEEeCC---CCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTR---TSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~---~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ..|.++++||+|+|++||+|.+..   ..+.||+|.+..... ...+.+|+++|..+.     ++.||+++.+++..   
T Consensus        36 ~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~-p~ri~~El~~L~~~g-----G~~ni~~~~~~~rn---  106 (418)
T KOG1167|consen   36 NAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSS-PSRILNELEMLYRLG-----GSDNIIKLNGCFRN---  106 (418)
T ss_pred             hhhhhhccccccchhhhhhhhHhhhccccceEeeeecccccC-chHHHHHHHHHHHhc-----cchhhhcchhhhcc---
Confidence            569999999999999999998776   789999997665543 456899999999997     78899999999884   


Q ss_pred             CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          113 NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       113 ~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                       ++..++||||++++-+..+.    ..++...++.+++.++.||+++|.+ |||||||||.|++++.. +.....++.|+
T Consensus       107 -nd~v~ivlp~~~H~~f~~l~----~~l~~~~i~~Yl~~ll~Al~~~h~~-GIvHRDiKpsNFL~n~~-t~rg~LvDFgL  179 (418)
T KOG1167|consen  107 -NDQVAIVLPYFEHDRFRDLY----RSLSLAEIRWYLRNLLKALAHLHKN-GIVHRDIKPSNFLYNRR-TQRGVLVDFGL  179 (418)
T ss_pred             -CCeeEEEecccCccCHHHHH----hcCCHHHHHHHHHHHHHHhhhhhcc-CccccCCCccccccccc-cCCceEEechh
Confidence             48999999999665444333    2377889999999999999999997 99999999999999653 34445555555


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhh--hhhhcc-cCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANI--SIRRAS-MGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                      ..+...                      .++...+-.  .....+ +|.....+..-....-.+.++-+    .......
T Consensus       180 A~~~d~----------------------~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~----~~~r~~~  233 (418)
T KOG1167|consen  180 AQRYDG----------------------YQQTEHSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRC----NDGRPSE  233 (418)
T ss_pred             HHHHHh----------------------hhhhhhhhhhhcccCCccccCcccccccccccCCCCceecc----CCCccce
Confidence            432000                      000000000  000000 11111111111000000000000    0000112


Q ss_pred             cccCCCCCCccChHHhhcCC-CCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH-hhhCCC
Q 013220          270 FAEEIQTRQYRAPEVILRAG-YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK-IAIGGA  347 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~-~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~  347 (447)
                      .....||+.|+|||++.+.+ .++++||||.|||++.++++.+||....     .+...+..+..++|...-. ......
T Consensus       234 ~anrAGT~GfRaPEvL~k~~~QttaiDiws~GVI~Lslls~~~PFf~a~-----dd~~al~ei~tifG~~~mrk~A~l~g  308 (418)
T KOG1167|consen  234 RANRAGTPGFRAPEVLFRCPRQTTAIDIWSAGVILLSLLSRRYPFFKAK-----DDADALAEIATIFGSAEMRKCAALPG  308 (418)
T ss_pred             ecccCCCCCCCchHHHhhccCcCCccceeeccceeehhhccccccccCc-----cccchHHHHHHHhChHHHHHHhhcCC
Confidence            23457999999999999875 5899999999999999999999998775     5777788888888876633 222222


Q ss_pred             Cccchhccc--chhhhhhhcccCch--------hHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccc
Q 013220          348 QSKDYFDRH--GDLKRIRRLKFWSL--------DRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       348 ~~~~~~~~~--~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~  417 (447)
                      + .-+|+..  ..+... ...+..+        ++............+..+.+||.+||+.||.+|+||+++|.||||.+
T Consensus       309 ~-~~l~~ksn~~~~~e~-~~~f~s~~~~~~~~~~q~n~~~~~~~d~~~~~~~dlLdk~le~np~kRitAEeALkHpFF~~  386 (418)
T KOG1167|consen  309 R-ILLWQKSNIPTIPEL-RVNFETLHIESIYKSRQPNTEREIGSDVFPALLLDLLDKCLELNPQKRITAEDALKHPFFDE  386 (418)
T ss_pred             c-eeeeccccccccHHH-HhchhccChhhcccccccceeeccccccccHHHHHHHHHHccCChhhcccHHHHhcCcCCcc
Confidence            2 1112110  000000 0011111        11001111222334558899999999999999999999999999997


Q ss_pred             ccCCcccc
Q 013220          418 RNSTRDET  425 (447)
Q Consensus       418 ~~~~~~~~  425 (447)
                      .+......
T Consensus       387 ~~~~~~~~  394 (418)
T KOG1167|consen  387 ADRTERGL  394 (418)
T ss_pred             hhhhhhhh
Confidence            65544433

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-34  Score=272.63  Aligned_cols=291  Identities=30%  Similarity=0.467  Sum_probs=225.8

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      .||.-...+|.|.- .|-.|-|.-.++.||+|.....   ....+...+|+.++..+      .|+||++++.+|.-..-
T Consensus        17 ~Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v------~~~nii~l~n~ftP~~~   89 (369)
T KOG0665|consen   17 KRYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCV------NHKNIISLLNVFTPQKT   89 (369)
T ss_pred             eeeeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhh------cccceeeeeeccCcccc
Confidence            68988999999998 8888888888999999954322   22345677899999999      89999999999874321


Q ss_pred             --CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          113 --NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       113 --~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                        ....+|+|||+|..++..++.-    .++.+++..+++|++.|+++||+. ||+|||+||+||++             
T Consensus        90 l~~~~e~y~v~e~m~~nl~~vi~~----elDH~tis~i~yq~~~~ik~lhs~-~IihRdLkPsnivv-------------  151 (369)
T KOG0665|consen   90 LEEFQEVYLVMELMDANLCQVILM----ELDHETISYILYQMLCGIKHLHSA-GIIHRDLKPSNIVV-------------  151 (369)
T ss_pred             HHHHHhHHHHHHhhhhHHHHHHHH----hcchHHHHHHHHHHHHHHHHHHhc-ceeecccCccccee-------------
Confidence              2246999999999999888762    278889999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc--
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--  268 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~--  268 (447)
                                                                                 ...+.+|+.|||+|.....  
T Consensus       152 -----------------------------------------------------------~~~~~lKi~dfg~ar~e~~~~  172 (369)
T KOG0665|consen  152 -----------------------------------------------------------NSDCTLKILDFGLARTEDTDF  172 (369)
T ss_pred             -----------------------------------------------------------cchhheeeccchhhcccCccc
Confidence                                                                       4477899999999976553  


Q ss_pred             ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          269 QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       269 ~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      .-+.++.+.+|+|||++.+-.|...+||||+||++.+|+.|...|.+.      ...++...+.+.+|++-+.+......
T Consensus       173 ~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~g~------d~idQ~~ki~~~lgtpd~~F~~qL~~  246 (369)
T KOG0665|consen  173 MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFPGK------DHIDQWNKIIEQLGTPDPSFMKQLQP  246 (369)
T ss_pred             ccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEecCc------hHHHHHHHHHHHhcCCCHHHHHHhhH
Confidence            346678999999999999988999999999999999999999999977      47888889999999998887544333


Q ss_pred             ccchhcccchhhhhhhcccC-ch-hHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFW-SL-DRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                      ....|-+.  ...+-..++. .+ +..+......++..+..+++++.+||..||++|.+++++|+||||+.+
T Consensus       247 ~~r~yv~~--~~~y~~~~f~~~fpD~~f~~~~e~~~~~~~~ardll~~MLvi~pe~Risv~daL~HPY~~vw  316 (369)
T KOG0665|consen  247 TVRNYVEN--RPQYQAISFSELFPDSLFPVVLEGSKLDCSLARDLLSKMLVIDPEKRISVDDALRHPYIKVW  316 (369)
T ss_pred             HHHHHhhc--ChHhhccchhhhCCcccccccccCCccchHHHHHHHHHhhccChhhcccHHHHhcCCeeeee
Confidence            33222221  1111111111 01 111111222333446778999999999999999999999999999843

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.5e-33  Score=265.77  Aligned_cols=238  Identities=23%  Similarity=0.390  Sum_probs=185.5

Q ss_pred             EeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEE
Q 013220           42 RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCM  119 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~l  119 (447)
                      ++||.|+||.||+|.+.. ++.||+|.+....  .....+..|+++++.+      .|++|+++++.+...    ...++
T Consensus         1 ~~lg~g~~g~v~~~~~~~-~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l------~~~~i~~~~~~~~~~----~~~~~   69 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKG-NTEVAVKTCRSTLPPDLKRKFLQEAEILKQY------DHPNIVKLIGVCVQK----QPIYI   69 (251)
T ss_pred             CccccCCCceEEEEEEeC-CCcEEEEeccccCCHHHHHHHHHHHHHHHhC------CCCCeEEEEEEEecC----CCeEE
Confidence            468999999999999877 9999999876543  2456788899999998      788999999987753    68999


Q ss_pred             EEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCC
Q 013220          120 VLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER  198 (447)
Q Consensus       120 vmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~  198 (447)
                      ||||+ +++|.+.+.... ..+++..+..++.+++.||+|||++ +++||||||+||++                     
T Consensus        70 v~e~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~lH~~-~i~h~di~p~nili---------------------  126 (251)
T cd05041          70 VMELVPGGSLLTFLRKKK-NRLTVKKLLQMSLDAAAGMEYLESK-NCIHRDLAARNCLV---------------------  126 (251)
T ss_pred             EEEcCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhC-CEehhhcCcceEEE---------------------
Confidence            99999 788888875432 3578889999999999999999997 99999999999999                     


Q ss_pred             CCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccc-----cC
Q 013220          199 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA-----EE  273 (447)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~-----~~  273 (447)
                                                                         +....++|+|||.+........     ..
T Consensus       127 ---------------------------------------------------~~~~~~~l~d~g~~~~~~~~~~~~~~~~~  155 (251)
T cd05041         127 ---------------------------------------------------GENNVLKISDFGMSREEEGGIYTVSDGLK  155 (251)
T ss_pred             ---------------------------------------------------cCCCcEEEeeccccccccCCcceeccccC
Confidence                                                               3356799999999875432111     11


Q ss_pred             CCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccch
Q 013220          274 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  352 (447)
Q Consensus       274 ~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  352 (447)
                      ..+..|+|||.+.+..++.++|+|||||++|+|++ |..||....      .. ........  .               
T Consensus       156 ~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~------~~-~~~~~~~~--~---------------  211 (251)
T cd05041         156 QIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMS------NQ-QTRERIES--G---------------  211 (251)
T ss_pred             cceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCC------HH-HHHHHHhc--C---------------
Confidence            23556999999988889999999999999999998 888886542      11 11111000  0               


Q ss_pred             hcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          353 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                             .....+...+..+.+++.+||..+|.+|||+.|+++
T Consensus       212 -----------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~ell~  247 (251)
T cd05041         212 -----------------------YRMPAPQLCPEEIYRLMLQCWAYDPENRPSFSEIYN  247 (251)
T ss_pred             -----------------------CCCCCCccCCHHHHHHHHHHhccChhhCcCHHHHHH
Confidence                                   001123344668999999999999999999999985

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=4e-33  Score=265.25  Aligned_cols=238  Identities=21%  Similarity=0.351  Sum_probs=183.9

Q ss_pred             EeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEE
Q 013220           42 RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCM  119 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~l  119 (447)
                      +.||+|+||.||+|... .+..+|+|++....  .....+.+|+++++.+      .|+||+++++.+...    ...++
T Consensus         1 ~~ig~g~~g~vy~~~~~-~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~~----~~~~l   69 (250)
T cd05085           1 ELLGKGNFGEVFKGTLK-DKTPVAVKTCKEDLPQELKIKFLSEARILKQY------DHPNIVKLIGVCTQR----QPIYI   69 (250)
T ss_pred             CccCCCCCceEEEEEec-CCcEEEEEecCCcCCHHHHHHHHHHHHHHHhC------CCCCcCeEEEEEecC----CccEE
Confidence            36899999999999854 67889999876432  2344678899999998      789999999988743    57999


Q ss_pred             EEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCC
Q 013220          120 VLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER  198 (447)
Q Consensus       120 vmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~  198 (447)
                      ||||+ +++|.+.+.... ..+++..+..++.|++.||.|+|++ |++|+||||+||++                     
T Consensus        70 v~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~-~~~H~dl~p~nili---------------------  126 (250)
T cd05085          70 VMELVPGGDFLSFLRKKK-DELKTKQLVKFALDAAAGMAYLESK-NCIHRDLAARNCLV---------------------  126 (250)
T ss_pred             EEECCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhC-CeeecccChheEEE---------------------
Confidence            99999 888888775432 3478899999999999999999996 99999999999999                     


Q ss_pred             CCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccc----cCC
Q 013220          199 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA----EEI  274 (447)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~----~~~  274 (447)
                                                                         +....++|+|||++........    ...
T Consensus       127 ---------------------------------------------------~~~~~~~l~d~g~~~~~~~~~~~~~~~~~  155 (250)
T cd05085         127 ---------------------------------------------------GENNVLKISDFGMSRQEDDGIYSSSGLKQ  155 (250)
T ss_pred             ---------------------------------------------------cCCCeEEECCCccceeccccccccCCCCC
Confidence                                                               3356799999999864432211    113


Q ss_pred             CCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchh
Q 013220          275 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  353 (447)
Q Consensus       275 gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  353 (447)
                      ++..|+|||++.+..++.++|+|||||++|++++ |..||....      ......   .+....               
T Consensus       156 ~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~------~~~~~~---~~~~~~---------------  211 (250)
T cd05085         156 IPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMT------NQQARE---QVEKGY---------------  211 (250)
T ss_pred             CcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCC------HHHHHH---HHHcCC---------------
Confidence            3567999999988888999999999999999998 999996542      111111   100000               


Q ss_pred             cccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          354 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                             ....+...+..+.+|+.+||..+|++|||+.++++
T Consensus       212 -----------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  246 (250)
T cd05085         212 -----------------------RMSCPQKCPDDVYKVMQRCWDYKPENRPKFSELQK  246 (250)
T ss_pred             -----------------------CCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHH
Confidence                                   00122334668999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-35  Score=289.35  Aligned_cols=252  Identities=27%  Similarity=0.397  Sum_probs=212.9

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      .+++.+.-||-|+||.|-+.........+|+|++++..    ...+++..|-++|...      ..+.||++|..|.+. 
T Consensus       420 ~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~------~s~fIvrLYrTfrd~-  492 (732)
T KOG0614|consen  420 SDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMEC------RSDFIVRLYRTFRDS-  492 (732)
T ss_pred             hhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhc------CchHHHHHHHHhccc-
Confidence            45677788999999999999877666679999888764    3456888999999998      788999999999865 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                         .++|++||-| ||.+...+...  ..|++.+++.++..+++|++|||++ |||.||+||+|.++             
T Consensus       493 ---kyvYmLmEaClGGElWTiLrdR--g~Fdd~tarF~~acv~EAfeYLH~k-~iIYRDLKPENllL-------------  553 (732)
T KOG0614|consen  493 ---KYVYMLMEACLGGELWTILRDR--GSFDDYTARFYVACVLEAFEYLHRK-GIIYRDLKPENLLL-------------  553 (732)
T ss_pred             ---hhhhhhHHhhcCchhhhhhhhc--CCcccchhhhhHHHHHHHHHHHHhc-CceeccCChhheee-------------
Confidence               7999999999 99999988654  4599999999999999999999997 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF  270 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~  270 (447)
                                                                                 +..+.+||.|||+|+.+....
T Consensus       554 -----------------------------------------------------------d~~Gy~KLVDFGFAKki~~g~  574 (732)
T KOG0614|consen  554 -----------------------------------------------------------DNRGYLKLVDFGFAKKIGSGR  574 (732)
T ss_pred             -----------------------------------------------------------ccCCceEEeehhhHHHhccCC
Confidence                                                                       667899999999999776543


Q ss_pred             c--cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          271 A--EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       271 ~--~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      .  .+|||+.|.|||++..+..+.++|.||||+++|+|++|..||.+.+      .......+.+-+             
T Consensus       575 KTwTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~d------pmktYn~ILkGi-------------  635 (732)
T KOG0614|consen  575 KTWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVD------PMKTYNLILKGI-------------  635 (732)
T ss_pred             ceeeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCc------hHHHHHHHHhhh-------------
Confidence            3  3699999999999999999999999999999999999999998774      222222222111             


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCC-----hHHHhcCcccccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLR  418 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpt-----a~elL~hp~f~~~  418 (447)
                                                 +...+|+.++....+||++++..+|.+|.-     +.++-+|.||..-
T Consensus       636 ---------------------------d~i~~Pr~I~k~a~~Lik~LCr~~P~ERLG~~~~gI~DIkkH~Wf~gf  683 (732)
T KOG0614|consen  636 ---------------------------DKIEFPRRITKTATDLIKKLCRDNPTERLGYQKGGINDIKKHRWFEGF  683 (732)
T ss_pred             ---------------------------hhhhcccccchhHHHHHHHHHhcCcHhhhccccCChHHHHhhhhhhcC
Confidence                                       122467788889999999999999999985     8999999999754

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=3.7e-33  Score=268.97  Aligned_cols=244  Identities=23%  Similarity=0.307  Sum_probs=178.4

Q ss_pred             EeecccCceEEEEEEeC--CCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceE
Q 013220           42 RKLGWGQFSIVWLAYDT--RTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHL  117 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~--~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~  117 (447)
                      +.||+|+||.||+|...  .+...+|+|.++...  .....+.+|+.+++.+      +|+||+++++.+...    ...
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~~----~~~   70 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSL------QHSNLLQCLGQCTEV----TPY   70 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhC------CCCCEeeEEEEEcCC----CCc
Confidence            36899999999999754  456789999876543  2334688899999999      789999999988754    578


Q ss_pred             EEEEecc-cccHHHHHHhhcc---CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          118 CMVLEFL-GDSLLRLIKYSRY---KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       118 ~lvmE~~-~~~L~~~~~~~~~---~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ++||||+ +++|.+.+.....   ...+...+..++.|++.||+|||+. |++|+||||+||++.               
T Consensus        71 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~i~H~dlkp~nil~~---------------  134 (269)
T cd05087          71 LLVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKN-NFIHSDLALRNCLLT---------------  134 (269)
T ss_pred             EEEEECCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHC-CEeccccCcceEEEc---------------
Confidence            9999999 7899888754321   2356677888999999999999996 999999999999993               


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc----
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----  269 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~----  269 (447)
                                                                               ....++|+|||.+......    
T Consensus       135 ---------------------------------------------------------~~~~~kL~dfg~~~~~~~~~~~~  157 (269)
T cd05087         135 ---------------------------------------------------------ADLTVKIGDYGLSHNKYKEDYYV  157 (269)
T ss_pred             ---------------------------------------------------------CCCcEEECCccccccccCcceee
Confidence                                                                     3567999999998643321    


Q ss_pred             -cccCCCCCCccChHHhhcC-------CCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCH
Q 013220          270 -FAEEIQTRQYRAPEVILRA-------GYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  340 (447)
Q Consensus       270 -~~~~~gt~~y~aPE~l~~~-------~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~  340 (447)
                       .....++..|+|||++.+.       .++.++|||||||++|+|++ |..||....      ........  ..+....
T Consensus       158 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~------~~~~~~~~--~~~~~~~  229 (269)
T cd05087         158 TPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLS------DEQVLTYT--VREQQLK  229 (269)
T ss_pred             cCCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCC------hHHHHHHH--hhcccCC
Confidence             1123567889999998642       35789999999999999996 999996542      11111110  0000000


Q ss_pred             HhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          341 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                       +                                 ..+......++.+.+++.+|+ .+|++|||+++++.
T Consensus       230 -~---------------------------------~~~~~~~~~~~~~~~l~~~c~-~~P~~Rpt~~~l~~  265 (269)
T cd05087         230 -L---------------------------------PKPRLKLPLSDRWYEVMQFCW-LQPEQRPSAEEVHL  265 (269)
T ss_pred             -C---------------------------------CCCccCCCCChHHHHHHHHHh-cCcccCCCHHHHHH
Confidence             0                                 000111223557889999998 68999999999974

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=3e-33  Score=269.03  Aligned_cols=244  Identities=25%  Similarity=0.371  Sum_probs=184.9

Q ss_pred             eecccCceEEEEEEeCCCC------eEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           43 KLGWGQFSIVWLAYDTRTS------SYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        43 ~lG~G~~g~Vy~a~~~~~~------~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      .||.|+||.||+|++....      ..+|+|.+....  .....+.+|+++++.+      .|+||+++++++...    
T Consensus         2 ~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~~----   71 (269)
T cd05044           2 FLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNF------NHPNIVKLLGVCLLN----   71 (269)
T ss_pred             ccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhc------CCCCeeeEeeeecCC----
Confidence            6899999999999875433      789999765432  3345778899999999      889999999988753    


Q ss_pred             ceEEEEEecc-cccHHHHHHhhc-----cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSR-----YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~-----~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                      ...++||||+ +++|.+.+....     ...+++..+..++.|++.||+|||++ +++|+||||+||++.....      
T Consensus        72 ~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~-~i~H~dl~p~nil~~~~~~------  144 (269)
T cd05044          72 EPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQM-HFIHRDLAARNCLVSEKGY------  144 (269)
T ss_pred             CCeEEEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhC-CcccCCCChheEEEecCCC------
Confidence            5799999999 889988885432     12377888999999999999999996 9999999999999954210      


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                   +....++|+|||++.....
T Consensus       145 -------------------------------------------------------------~~~~~~~l~dfg~~~~~~~  163 (269)
T cd05044         145 -------------------------------------------------------------DADRVVKIGDFGLARDIYK  163 (269)
T ss_pred             -------------------------------------------------------------CCCcceEECCccccccccc
Confidence                                                                         1233689999999865432


Q ss_pred             c-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh
Q 013220          269 Q-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  342 (447)
Q Consensus       269 ~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (447)
                      .     .....++..|+|||.+.+..++.++|||||||++|+|++ |..||....      .......+ .. +      
T Consensus       164 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~------~~~~~~~~-~~-~------  229 (269)
T cd05044         164 SDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALN------NQEVLQHV-TA-G------  229 (269)
T ss_pred             ccccccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccC------HHHHHHHH-hc-C------
Confidence            1     112245678999999998889999999999999999998 999996442      11111110 00 0      


Q ss_pred             hhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                       .....+...+..+.+||.+||..+|.+||+++++++
T Consensus       230 ---------------------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  265 (269)
T cd05044         230 ---------------------------------GRLQKPENCPDKIYQLMTNCWAQDPSERPTFDRIQE  265 (269)
T ss_pred             ---------------------------------CccCCcccchHHHHHHHHHHcCCCcccCCCHHHHHH
Confidence                                             011123345678899999999999999999999875

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-34  Score=292.49  Aligned_cols=206  Identities=29%  Similarity=0.432  Sum_probs=175.9

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC-
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP-  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~-  112 (447)
                      +-+...+.||+|+||.||+|+++.+|+.||||.++..  ....+.+.+|+++|+++      +|+|||+++++=..... 
T Consensus        13 y~W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKL------nh~NIVk~f~iee~~~~~   86 (732)
T KOG4250|consen   13 YLWEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKL------NHPNIVKLFDIEETKFLG   86 (732)
T ss_pred             cceeehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHc------CchhhhhhcccCCccccC
Confidence            5678889999999999999999999999999987764  34567889999999999      89999999998654421 


Q ss_pred             -CcceEEEEEecc-cccHHHHHHh-hccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          113 -NGQHLCMVLEFL-GDSLLRLIKY-SRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       113 -~~~~~~lvmE~~-~~~L~~~~~~-~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                       -...-.+||||| ||+|...+.. ...+++++.+++.+...+..||.|||++ ||+||||||.||++..-.        
T Consensus        87 ~~~~~~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn-~IvHRDlKP~NIvl~~Ge--------  157 (732)
T KOG4250|consen   87 LVTRLPVLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLREN-GIVHRDLKPGNIVLQIGE--------  157 (732)
T ss_pred             cccccceEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHc-CceeccCCCCcEEEeecC--------
Confidence             135688999999 9999998864 3456799999999999999999999997 999999999999994310        


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc-
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-  268 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~-  268 (447)
                                                                                  +.....||+|||.|+..++ 
T Consensus       158 ------------------------------------------------------------dgq~IyKLtDfG~Arel~d~  177 (732)
T KOG4250|consen  158 ------------------------------------------------------------DGQSIYKLTDFGAARELDDN  177 (732)
T ss_pred             ------------------------------------------------------------CCceEEeeecccccccCCCC
Confidence                                                                        2345679999999986653 


Q ss_pred             -ccccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCC
Q 013220          269 -QFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPK  316 (447)
Q Consensus       269 -~~~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~  316 (447)
                       .....+||..|.+||++.+ ..|+..+|.|||||++|+.+||..||...
T Consensus       178 s~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p~  227 (732)
T KOG4250|consen  178 SLFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIPF  227 (732)
T ss_pred             CeeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCcC
Confidence             4566789999999999995 78899999999999999999999999765

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=100.00  E-value=3.7e-33  Score=268.81  Aligned_cols=244  Identities=23%  Similarity=0.320  Sum_probs=177.7

Q ss_pred             EeecccCceEEEEEEeCC--CCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceE
Q 013220           42 RKLGWGQFSIVWLAYDTR--TSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHL  117 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~--~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~  117 (447)
                      ++||+|+||.||+|....  ....+++|.+...  ......+.+|+++++.+      +|+||+++++.+...    ...
T Consensus         1 ~~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l------~h~nii~~~~~~~~~----~~~   70 (269)
T cd05042           1 DEIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYREL------NHPNVLQCLGQCIES----IPY   70 (269)
T ss_pred             CcCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhC------CCCCcceEEEEECCC----Cce
Confidence            368999999999996432  4567888976533  23345677899999888      899999999988753    679


Q ss_pred             EEEEecc-cccHHHHHHhhcc---CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          118 CMVLEFL-GDSLLRLIKYSRY---KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       118 ~lvmE~~-~~~L~~~~~~~~~---~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ++||||+ +++|.+++.....   ...++..+..++.||+.||+|||+. ||+||||||+||++                
T Consensus        71 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~dlkp~Nill----------------  133 (269)
T cd05042          71 LLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQA-DFIHSDLALRNCQL----------------  133 (269)
T ss_pred             EEEEEeCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhc-CEecccccHhheEe----------------
Confidence            9999999 8899988865431   2245777889999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc----
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----  269 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~----  269 (447)
                                                                              +....++|+|||++......    
T Consensus       134 --------------------------------------------------------~~~~~~kl~dfg~~~~~~~~~~~~  157 (269)
T cd05042         134 --------------------------------------------------------TADLSVKIGDYGLALEQYPEDYYI  157 (269)
T ss_pred             --------------------------------------------------------cCCCcEEEeccccccccccchhee
Confidence                                                                    33567999999998543211    


Q ss_pred             -cccCCCCCCccChHHhhc-------CCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCH
Q 013220          270 -FAEEIQTRQYRAPEVILR-------AGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  340 (447)
Q Consensus       270 -~~~~~gt~~y~aPE~l~~-------~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~  340 (447)
                       .....++..|+|||++..       ..++.++|||||||++|+|++ |..||....      ..........   ....
T Consensus       158 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~------~~~~~~~~~~---~~~~  228 (269)
T cd05042         158 TKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLS------DEQVLKQVVR---EQDI  228 (269)
T ss_pred             ccCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCC------HHHHHHHHhh---ccCc
Confidence             122345678999999853       346789999999999999998 788886442      1111111111   1000


Q ss_pred             HhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          341 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                      .+                                 ..+..+...+..+.+++..|+ .||++|||++++++
T Consensus       229 ~~---------------------------------~~~~~~~~~~~~~~~~~~~~~-~dp~~Rpt~~~v~~  265 (269)
T cd05042         229 KL---------------------------------PKPQLDLKYSDRWYEVMQFCW-LDPETRPTAEEVHE  265 (269)
T ss_pred             cC---------------------------------CCCcccccCCHHHHHHHHHHh-cCcccccCHHHHHH
Confidence            00                                 001122344667788898888 59999999999975

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=8.4e-33  Score=264.86  Aligned_cols=241  Identities=19%  Similarity=0.258  Sum_probs=179.5

Q ss_pred             EeecccCceEEEEEEeCC---CCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcce
Q 013220           42 RKLGWGQFSIVWLAYDTR---TSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQH  116 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~---~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~  116 (447)
                      +.||+|+||.||+|.+..   .+..||+|.+...  ......+.+|+.+++.+      +|+||+++++.+...   ...
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~~---~~~   71 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDF------SHPNVLSLLGICLPS---EGS   71 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccC------CCCCcceEEEEeecC---CCC
Confidence            468999999999997643   3567999987532  23356778899999888      789999999976532   245


Q ss_pred             EEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCC
Q 013220          117 LCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI  195 (447)
Q Consensus       117 ~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~  195 (447)
                      .+++|||+ +++|.+++.... ...+...+..++.|++.||+|||+. +|+||||||+||+++                 
T Consensus        72 ~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dlk~~nili~-----------------  132 (262)
T cd05058          72 PLVVLPYMKHGDLRNFIRSET-HNPTVKDLIGFGLQVAKGMEYLASK-KFVHRDLAARNCMLD-----------------  132 (262)
T ss_pred             cEEEEecCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhC-CccccccCcceEEEc-----------------
Confidence            78999999 889998876432 3356777888999999999999996 999999999999993                 


Q ss_pred             cCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc------
Q 013220          196 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ------  269 (447)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~------  269 (447)
                                                                             ....++|+|||++......      
T Consensus       133 -------------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~  157 (262)
T cd05058         133 -------------------------------------------------------ESFTVKVADFGLARDIYDKEYYSVH  157 (262)
T ss_pred             -------------------------------------------------------CCCcEEECCccccccccCCcceeec
Confidence                                                                   3567999999998644321      


Q ss_pred             -cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhC-CCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          270 -FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATG-DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       270 -~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g-~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                       .....++..|+|||.+.+..++.++|||||||++|+|++| ..||...+       ...  ....+...          
T Consensus       158 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~-------~~~--~~~~~~~~----------  218 (262)
T cd05058         158 NHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVD-------SFD--ITVYLLQG----------  218 (262)
T ss_pred             ccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCCC-------HHH--HHHHHhcC----------
Confidence             1122456789999999888899999999999999999995 55554321       111  11111000          


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                  ..+..+...+..+.+++.+||+.+|++||++.+++..
T Consensus       219 ----------------------------~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~il~~  255 (262)
T cd05058         219 ----------------------------RRLLQPEYCPDPLYEVMLSCWHPKPEMRPTFSELVSR  255 (262)
T ss_pred             ----------------------------CCCCCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHH
Confidence                                        0011222345688899999999999999999999863

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=100.00  E-value=4.4e-35  Score=269.00  Aligned_cols=291  Identities=23%  Similarity=0.327  Sum_probs=217.7

Q ss_pred             CCCCCCCCCccccCCCCCCCccccccC-c---cccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHH
Q 013220            4 SSSSGSEDDDEGIDSYRKGGYHAVRVG-D---LFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQ   77 (447)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~g-~---~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~   77 (447)
                      |+..++..+.|.+.+|-.|.  -+.++ +   .+.....+-.+.||.|+||+|++-.++.+++..|||.+....  ....
T Consensus        30 ~~n~~~~~~~~~lr~~s~g~--l~~p~~~~~~~F~~~~Lqdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~  107 (361)
T KOG1006|consen   30 SSNEDNMPEEERLRSYSTGT--LKLPDDAHLHTFTSDNLQDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQK  107 (361)
T ss_pred             CCcccccchHHHHHHhccCc--eecCCcccccccccchHHHHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHH
Confidence            33344444555565555551  11111 1   233345556678999999999999999999999999877553  4456


Q ss_pred             HHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEEEecccccHHHHHHh---hccCCCCHHHHHHHHHHHHH
Q 013220           78 AALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKY---SRYKGLELNKVREICKYILT  154 (447)
Q Consensus        78 ~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~~~~L~~~~~~---~~~~~l~~~~~~~i~~qil~  154 (447)
                      .+..|.+...+-.     +.++||++|++....    ...||.||.|..++..+++.   -+...++|+-+..|.-..+.
T Consensus       108 rll~e~d~~mks~-----~cp~IVkfyGa~F~E----GdcWiCMELMd~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~  178 (361)
T KOG1006|consen  108 RLLMEHDTVMKSS-----NCPNIVKFYGALFSE----GDCWICMELMDISLDKLYKRVYSVQKSRIPENILGHITVATVD  178 (361)
T ss_pred             HHHHHHHHHHhhc-----CCcHHHHHhhhhhcC----CceeeeHHHHhhhHHHHHHHHHHHHhccCcHhhhhheeeeehh
Confidence            7888888776664     889999999987753    47899999998887766643   12345888888888888999


Q ss_pred             HHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhc
Q 013220          155 GLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRA  234 (447)
Q Consensus       155 aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (447)
                      ||.||-.++.|||||+||.|||+                                                         
T Consensus       179 AL~yLK~~lkiIHRDvKPSNILl---------------------------------------------------------  201 (361)
T KOG1006|consen  179 ALDYLKEELKIIHRDVKPSNILL---------------------------------------------------------  201 (361)
T ss_pred             HHHHHHHHhhhhhccCChhheEE---------------------------------------------------------
Confidence            99999988899999999999999                                                         


Q ss_pred             ccCCCCCCCCCccCCCcccceeEeecCcccccccc--cccCCCCCCccChHHhhc--CCCCccchhHhHHHHHHHHhhCC
Q 013220          235 SMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FAEEIQTRQYRAPEVILR--AGYSFSVDMWSFACTAFELATGD  310 (447)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--~~~~~gt~~y~aPE~l~~--~~~~~~~DiwSlGvil~~l~~g~  310 (447)
                                     +..+.+||||||++-....+  .+...|..+|+|||.+.-  ..|+.++|+||||++||++.+|.
T Consensus       202 ---------------dr~G~vKLCDFGIcGqLv~SiAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~  266 (361)
T KOG1006|consen  202 ---------------DRHGDVKLCDFGICGQLVDSIAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGN  266 (361)
T ss_pred             ---------------ecCCCEeeecccchHhHHHHHHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCC
Confidence                           56788999999999655443  345678999999999973  45899999999999999999999


Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHHh-CCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHH
Q 013220          311 MLFAPKSGQGFCEDEDHLALMMELI-GKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFA  389 (447)
Q Consensus       311 ~Pf~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  389 (447)
                      +||...+        ...+++-++. |.+|. +....                                 -.-+.+..+.
T Consensus       267 fPyr~w~--------svfeql~~Vv~gdpp~-l~~~~---------------------------------~~~~~s~~~~  304 (361)
T KOG1006|consen  267 FPYRKWD--------SVFEQLCQVVIGDPPI-LLFDK---------------------------------ECVHYSFSMV  304 (361)
T ss_pred             CCcchHH--------HHHHHHHHHHcCCCCe-ecCcc---------------------------------cccccCHHHH
Confidence            9998763        1333333332 33332 11000                                 0012466899


Q ss_pred             HHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          390 EFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       390 ~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                      .||.-||.+|-.+||+-.+++++||++.-.
T Consensus       305 ~fintCl~Kd~~~Rpky~~Lk~~~fyr~y~  334 (361)
T KOG1006|consen  305 RFINTCLIKDRSDRPKYDDLKKFPFYRMYA  334 (361)
T ss_pred             HHHHHHhhcccccCcchhhhhcCchhhhhh
Confidence            999999999999999999999999998643

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=8.4e-35  Score=267.94  Aligned_cols=284  Identities=30%  Similarity=0.513  Sum_probs=215.6

Q ss_pred             eEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           38 YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        38 y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      .+-.+.||.|+||.||..+|..+++.||+|.+..-.   .....+++|+++|.-+      .|.||+..++...-..++.
T Consensus        55 i~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfF------kHdNVLSaLDILQPph~df  128 (449)
T KOG0664|consen   55 IQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSF------RHDNVLSLLDILQPANPSF  128 (449)
T ss_pred             CCCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhh------ccccHHHHHHhcCCCCchH
Confidence            345578999999999999999999999999654322   3356788999999999      6777877777665432221


Q ss_pred             -ceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 -QHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 -~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                       +.+|++.|.|..+|..++.+-  +.++...++-+.+||+.||+|||+. +|.||||||.|.++                
T Consensus       129 FqEiYV~TELmQSDLHKIIVSP--Q~Ls~DHvKVFlYQILRGLKYLHsA-~ILHRDIKPGNLLV----------------  189 (449)
T KOG0664|consen  129 FQELYVLTELMQSDLHKIIVSP--QALTPDHVKVFVYQILRGLKYLHTA-NILHRDIKPGNLLV----------------  189 (449)
T ss_pred             HHHHHHHHHHHHhhhhheeccC--CCCCcchhhhhHHHHHhhhHHHhhc-chhhccCCCccEEe----------------
Confidence             368899999999999988754  3588899999999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc----
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----  269 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~----  269 (447)
                                                                              +.++.+|+||||++...+..    
T Consensus       190 --------------------------------------------------------NSNCvLKICDFGLARvee~d~~~h  213 (449)
T KOG0664|consen  190 --------------------------------------------------------NSNCILKICDFGLARTWDQRDRLN  213 (449)
T ss_pred             --------------------------------------------------------ccCceEEecccccccccchhhhhh
Confidence                                                                    45788999999999765533    


Q ss_pred             cccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh---hhC
Q 013220          270 FAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI---AIG  345 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~  345 (447)
                      -+..+-|.+|+|||++.+. .|+.++||||+|||+.+|+..+..|...      +...+++.+.+++|++..+-   ...
T Consensus       214 MTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq------~PiqQL~lItdLLGTPs~EaMr~ACE  287 (449)
T KOG0664|consen  214 MTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAA------GPIEQLQMIIDLLGTPSQEAMKYACE  287 (449)
T ss_pred             hHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhcc------ChHHHHHHHHHHhCCCcHHHHHHHhh
Confidence            2344678999999999986 4899999999999999999999999766      57889999999999988542   111


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                      +.+..-...-...-..-+.++..+           +..-..+..+++.+||++||++|++.++++.|++..+.+
T Consensus       288 GAk~H~LR~~~k~Ps~~vLYtlsS-----------~~~~~heav~~~~~~l~~d~dkris~~~A~~~~~~~e~R  350 (449)
T KOG0664|consen  288 GAKNHVLRAGLRAPDTQRLYKIAS-----------PDDKNHEAVDLLQKLLHFDPDKRISVEEALQHRYLEEGR  350 (449)
T ss_pred             hhHHHhhccCCCCCCccceeeecC-----------CcccchHHHHHHHHHhCCCCcccccHhhhcccccccccc
Confidence            111111110000000000000000           011234677899999999999999999999999988754

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=100.00  E-value=9.5e-33  Score=265.72  Aligned_cols=249  Identities=21%  Similarity=0.376  Sum_probs=189.4

Q ss_pred             ceEEEEeecccCceEEEEEEeCC-CCeEEEEEEechh-----------HHhHHHHHHHHHHHHHhhcCCCCCcceeeeec
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTR-TSSYVALKIQKSA-----------AQFAQAALHEIEVLSAVADGDPSNEKCVIRLI  104 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~-~~~~vaiK~~~~~-----------~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~  104 (447)
                      .|++.+.||+|+||.||+|.+.. +++.+|+|.+...           ......+..|+.++....     +|+||++++
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~-----~h~~i~~~~   75 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQL-----RHPNIVRYY   75 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcC-----CCCCeeeEE
Confidence            38889999999999999999887 6889999976422           122345666777776532     899999999


Q ss_pred             ccccccCCCcceEEEEEecc-cccHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecC
Q 013220          105 DHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTI  181 (447)
Q Consensus       105 ~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~--~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~  181 (447)
                      +.+..    +...+++|||+ +++|.+.+...  ....+++..+..++.|++.||.|||++.+++|+||+|+||++    
T Consensus        76 ~~~~~----~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~i~H~dl~~~nil~----  147 (269)
T cd08528          76 KTFLE----NDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIML----  147 (269)
T ss_pred             eeEcc----CCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCceeecCCCHHHEEE----
Confidence            98875    36899999999 77888776432  223588899999999999999999963389999999999999    


Q ss_pred             CCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecC
Q 013220          182 DPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFG  261 (447)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg  261 (447)
                                                                                          +....++|+|||
T Consensus       148 --------------------------------------------------------------------~~~~~~~l~dfg  159 (269)
T cd08528         148 --------------------------------------------------------------------GEDDKVTITDFG  159 (269)
T ss_pred             --------------------------------------------------------------------CCCCcEEEeccc
Confidence                                                                                335679999999


Q ss_pred             cccccccc--cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCC
Q 013220          262 NACRANKQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMP  339 (447)
Q Consensus       262 ~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~  339 (447)
                      .+......  .....++..|+|||.+.+..++.++|+|||||++|+|++|..||...+      ..   .....+.....
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~------~~---~~~~~~~~~~~  230 (269)
T cd08528         160 LAKQKQPESKLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTN------ML---SLATKIVEAVY  230 (269)
T ss_pred             ceeecccccccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccC------HH---HHHHHHhhccC
Confidence            99754433  233467889999999998889999999999999999999999996432      11   11111100000


Q ss_pred             HHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          340 RKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                      .                                     .......+..+.+||.+||+.||++||++.|+.++
T Consensus       231 ~-------------------------------------~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~  266 (269)
T cd08528         231 E-------------------------------------PLPEGMYSEDVTDVITSCLTPDAEARPDIIQVSAM  266 (269)
T ss_pred             C-------------------------------------cCCcccCCHHHHHHHHHHCCCCCccCCCHHHHHHH
Confidence            0                                     00011235688999999999999999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-33  Score=285.09  Aligned_cols=246  Identities=24%  Similarity=0.334  Sum_probs=194.9

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCC----eEEEEEEech----hHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTS----SYVALKIQKS----AAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~----~~vaiK~~~~----~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      .+-.+.++||+|+||.||+|.....+    ..||+|..+.    .......+.+|.++++.+      +|+|||++||+.
T Consensus       157 ~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l------~H~NVVr~yGVa  230 (474)
T KOG0194|consen  157 SDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQL------NHPNVVRFYGVA  230 (474)
T ss_pred             cCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhC------CCCCEEEEEEEE
Confidence            45567789999999999999765432    2389998774    234567899999999999      899999999988


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCC
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKD  186 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~  186 (447)
                      ...    ..+++|||+| ||+|.+++.... ..++..+...++.+.+.||+|||++ ++|||||-.+|+|++.       
T Consensus       231 ~~~----~Pl~ivmEl~~gGsL~~~L~k~~-~~v~~~ek~~~~~~AA~Gl~YLh~k-~~IHRDIAARNcL~~~-------  297 (474)
T KOG0194|consen  231 VLE----EPLMLVMELCNGGSLDDYLKKNK-KSLPTLEKLRFCYDAARGLEYLHSK-NCIHRDIAARNCLYSK-------  297 (474)
T ss_pred             cCC----CccEEEEEecCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHhHHHHHHHC-CCcchhHhHHHheecC-------
Confidence            754    7899999999 999999997654 2588999999999999999999997 9999999999999943       


Q ss_pred             cccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccc
Q 013220          187 PIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA  266 (447)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~  266 (447)
                                                                                       ...+|++|||++...
T Consensus       298 -----------------------------------------------------------------~~~vKISDFGLs~~~  312 (474)
T KOG0194|consen  298 -----------------------------------------------------------------KGVVKISDFGLSRAG  312 (474)
T ss_pred             -----------------------------------------------------------------CCeEEeCccccccCC
Confidence                                                                             455899999998655


Q ss_pred             cccccc---CCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh
Q 013220          267 NKQFAE---EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  342 (447)
Q Consensus       267 ~~~~~~---~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (447)
                      ......   .--+..|+|||.+....|++++|||||||++|++++ |..||.+..      .....+.+..-        
T Consensus       313 ~~~~~~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~------~~~v~~kI~~~--------  378 (474)
T KOG0194|consen  313 SQYVMKKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMK------NYEVKAKIVKN--------  378 (474)
T ss_pred             cceeeccccccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCC------HHHHHHHHHhc--------
Confidence            421111   123678999999999999999999999999999998 788998763      22111111110        


Q ss_pred             hhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                      ..+...+...+.++..++.+|+..||++|||+.++.+
T Consensus       379 --------------------------------~~r~~~~~~~p~~~~~~~~~c~~~~p~~R~tm~~i~~  415 (474)
T KOG0194|consen  379 --------------------------------GYRMPIPSKTPKELAKVMKQCWKKDPEDRPTMSTIKK  415 (474)
T ss_pred             --------------------------------CccCCCCCCCHHHHHHHHHHhccCChhhccCHHHHHH
Confidence                                            0111244556788999999999999999999988863

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=100.00  E-value=1.3e-32  Score=265.27  Aligned_cols=249  Identities=23%  Similarity=0.319  Sum_probs=187.1

Q ss_pred             eEEEEeecccCceEEEEEEeC---CCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           38 YIAQRKLGWGQFSIVWLAYDT---RTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        38 y~l~~~lG~G~~g~Vy~a~~~---~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      |++.+.||+|+||.||+|.+.   .++..||+|+++.+   ....+.+.+|+++++.+      +|+||+++++++....
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~~~   74 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEF------DHPNVIKLIGVSLRSR   74 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcC------CCCCcceEEEEEccCC
Confidence            677889999999999999754   35789999987653   23345678899999999      7899999999876543


Q ss_pred             CCc--ceEEEEEecc-cccHHHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCC
Q 013220          112 PNG--QHLCMVLEFL-GDSLLRLIKYSRY----KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       112 ~~~--~~~~lvmE~~-~~~L~~~~~~~~~----~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~  184 (447)
                      ..+  ...++++||+ ++++...+.....    ..++...+..++.|++.||+|||++ ||+||||||+||++       
T Consensus        75 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~-~i~H~dikp~nili-------  146 (273)
T cd05074          75 AKGRLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSK-NFIHRDLAARNCML-------  146 (273)
T ss_pred             CCCcccceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhC-CEeecccchhhEEE-------
Confidence            222  2457899999 7888776643221    1367888999999999999999997 99999999999999       


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                       +....++|+|||.+.
T Consensus       147 -----------------------------------------------------------------~~~~~~kl~dfg~~~  161 (273)
T cd05074         147 -----------------------------------------------------------------NENMTVCVADFGLSK  161 (273)
T ss_pred             -----------------------------------------------------------------cCCCCEEECcccccc
Confidence                                                                             335679999999987


Q ss_pred             cccccc-----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCC
Q 013220          265 RANKQF-----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKM  338 (447)
Q Consensus       265 ~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~  338 (447)
                      ......     ....++..|++||.+....++.++|||||||++|+|++ |..||...+      . .....  .+... 
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~------~-~~~~~--~~~~~-  231 (273)
T cd05074         162 KIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVE------N-SEIYN--YLIKG-  231 (273)
T ss_pred             cccCCcceecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCC------H-HHHHH--HHHcC-
Confidence            543221     12234678999999998889999999999999999998 888886442      1 11100  00000 


Q ss_pred             CHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          339 PRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                           .....+...+..+.+++.+||..+|++||++.+++.+
T Consensus       232 -------------------------------------~~~~~~~~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~  268 (273)
T cd05074         232 -------------------------------------NRLKQPPDCLEDVYELMCQCWSPEPKCRPSFQHLRDQ  268 (273)
T ss_pred             -------------------------------------CcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                                                 0001122345689999999999999999999999853

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.9e-33  Score=280.11  Aligned_cols=268  Identities=22%  Similarity=0.367  Sum_probs=211.3

Q ss_pred             CCccccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH----hHHHHHHHHHHHHHhhcCCCCCc
Q 013220           22 GGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ----FAQAALHEIEVLSAVADGDPSNE   97 (447)
Q Consensus        22 ~~~~~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~----~~~~~~~E~~~l~~l~~~~~~~~   97 (447)
                      +.|..++=..+-. .-|..++-||-|+||.|-+++...|...||.|.+.+...    ...++..|-.||...+      +
T Consensus       616 SnYiRLkRaKMdK-SmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEAD------n  688 (1034)
T KOG0608|consen  616 SNYIRLKRAKMDK-SMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEAD------N  688 (1034)
T ss_pred             hhHHHHHHhhccc-cceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcC------C
Confidence            3555555555554 569999999999999999999999999999998765542    2346777999999994      5


Q ss_pred             ceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeE
Q 013220           98 KCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL  176 (447)
Q Consensus        98 ~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nil  176 (447)
                      .-||++|=.|.+.    +.+|+||+|+ ||++-+++.+.  .-|+|..++.++..+..|++++|. +|.|||||||+|||
T Consensus       689 ~WVVrLyySFQDk----dnLYFVMdYIPGGDmMSLLIrm--gIFeE~LARFYIAEltcAiesVHk-mGFIHRDiKPDNIL  761 (1034)
T KOG0608|consen  689 EWVVRLYYSFQDK----DNLYFVMDYIPGGDMMSLLIRM--GIFEEDLARFYIAELTCAIESVHK-MGFIHRDIKPDNIL  761 (1034)
T ss_pred             cceEEEEEEeccC----CceEEEEeccCCccHHHHHHHh--ccCHHHHHHHHHHHHHHHHHHHHh-ccceecccCccceE
Confidence            5599999888864    8999999999 99999988754  348999999999999999999998 79999999999999


Q ss_pred             eeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCccccee
Q 013220          177 LVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCK  256 (447)
Q Consensus       177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  256 (447)
                      |                                                                        +.++.+|
T Consensus       762 I------------------------------------------------------------------------DrdGHIK  769 (1034)
T KOG0608|consen  762 I------------------------------------------------------------------------DRDGHIK  769 (1034)
T ss_pred             E------------------------------------------------------------------------ccCCcee
Confidence            9                                                                        6789999


Q ss_pred             EeecCccccc--c---------------c-----------c-----------------cccCCCCCCccChHHhhcCCCC
Q 013220          257 VVDFGNACRA--N---------------K-----------Q-----------------FAEEIQTRQYRAPEVILRAGYS  291 (447)
Q Consensus       257 L~Dfg~a~~~--~---------------~-----------~-----------------~~~~~gt~~y~aPE~l~~~~~~  291 (447)
                      |.|||+|.-.  .               .           .                 ....+||+-|+|||++.+..|+
T Consensus       770 LTDFGLCTGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~  849 (1034)
T KOG0608|consen  770 LTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYT  849 (1034)
T ss_pred             eeeccccccceeccccccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCcc
Confidence            9999999311  0               0           0                 0112689999999999999999


Q ss_pred             ccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchh
Q 013220          292 FSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLD  371 (447)
Q Consensus       292 ~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (447)
                      ..+|.||.|||||+|+.|+.||-.....+++....                                          +|+
T Consensus       850 q~cdwws~gvil~em~~g~~pf~~~tp~~tq~kv~------------------------------------------nw~  887 (1034)
T KOG0608|consen  850 QLCDWWSVGVILYEMLVGQPPFLADTPGETQYKVI------------------------------------------NWR  887 (1034)
T ss_pred             ccchhhHhhHHHHHHhhCCCCccCCCCCcceeeee------------------------------------------ehh
Confidence            99999999999999999999998887655422111                                          111


Q ss_pred             HHhhhhcCCChhhHHHHHHHHhhccccCCCCCC---ChHHHhcCcccccccC
Q 013220          372 RLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP---TAQQCLQHPWLSLRNS  420 (447)
Q Consensus       372 ~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp---ta~elL~hp~f~~~~~  420 (447)
                      ..+.-.  .-.+.+.++.+||.+++ .++++|+   -++|+-+||||+.++=
T Consensus       888 ~~l~~~--~~~~ls~e~~~li~kLc-~sad~RLGkng~d~vKaHpfFkgIDf  936 (1034)
T KOG0608|consen  888 NFLHIP--YQGNLSKEALDLIQKLC-CSADSRLGKNGADQVKAHPFFKGIDF  936 (1034)
T ss_pred             hccccc--cccccCHHHHHHHHHHh-cChhhhhcccchhhhhcCccccccch
Confidence            111111  12345778999998875 5688997   4788999999998753

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=100.00  E-value=4e-32  Score=261.92  Aligned_cols=243  Identities=21%  Similarity=0.278  Sum_probs=175.7

Q ss_pred             eecccCceEEEEEEeCC--CCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEE
Q 013220           43 KLGWGQFSIVWLAYDTR--TSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLC  118 (447)
Q Consensus        43 ~lG~G~~g~Vy~a~~~~--~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~  118 (447)
                      +||+|+||.||+|....  ....+++|.+....  .....+.+|+.+++.+      +|+||+++++.+...    ...+
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l------~h~~iv~~~~~~~~~----~~~~   71 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRIL------QHPNILQCLGQCVEA----IPYL   71 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhcc------CCcchhheEEEecCC----CccE
Confidence            68999999999996433  33456777655432  3356788899999888      899999999988753    6899


Q ss_pred             EEEecc-cccHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCC
Q 013220          119 MVLEFL-GDSLLRLIKYSR--YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI  195 (447)
Q Consensus       119 lvmE~~-~~~L~~~~~~~~--~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~  195 (447)
                      +||||+ +++|.+++....  ....++..+..++.||+.||+|||++ +++|+||||+||++                  
T Consensus        72 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~-~i~H~dikp~nil~------------------  132 (268)
T cd05086          72 LVFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKH-NFLHSDLALRNCFL------------------  132 (268)
T ss_pred             EEEecCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHC-CeeccCCccceEEE------------------
Confidence            999999 789998886532  23356677889999999999999996 99999999999999                  


Q ss_pred             cCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc-----cc
Q 013220          196 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-----QF  270 (447)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~-----~~  270 (447)
                                                                            +....++|+|||++.....     ..
T Consensus       133 ------------------------------------------------------~~~~~~~l~Dfg~~~~~~~~~~~~~~  158 (268)
T cd05086         133 ------------------------------------------------------TSDLTVKVGDYGIGPSRYKEDYIETE  158 (268)
T ss_pred             ------------------------------------------------------cCCccEEecccccccccCcchhhhcc
Confidence                                                                  3356799999998753221     12


Q ss_pred             ccCCCCCCccChHHhhc-------CCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh
Q 013220          271 AEEIQTRQYRAPEVILR-------AGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  342 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~-------~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (447)
                      ...+++..|+|||++..       ..++.++|||||||++|+|++ |..||...+      ....+..+..   .....+
T Consensus       159 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~------~~~~~~~~~~---~~~~~~  229 (268)
T cd05086         159 DDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLS------DREVLNHVIK---DQQVKL  229 (268)
T ss_pred             cCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHh---hccccc
Confidence            23467889999999853       235789999999999999997 566775432      1111111110   000000


Q ss_pred             hhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                       ..+.+....++.+.+++..|| .+|++|||++++++
T Consensus       230 ---------------------------------~~~~~~~~~~~~~~~l~~~c~-~~P~~Rp~~~~i~~  264 (268)
T cd05086         230 ---------------------------------FKPQLELPYSERWYEVLQFCW-LSPEKRATAEEVHR  264 (268)
T ss_pred             ---------------------------------CCCccCCCCcHHHHHHHHHHh-hCcccCCCHHHHHH
Confidence                                             001122234567888999999 68999999999974

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-32  Score=268.03  Aligned_cols=272  Identities=22%  Similarity=0.308  Sum_probs=209.8

Q ss_pred             ccCCCCCCCccccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCC
Q 013220           15 GIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDP   94 (447)
Q Consensus        15 ~~~~~~~~~~~~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~   94 (447)
                      .+.....|+..|+.+..+++ ++.++++.||+|.||.||+|++  .|+.||||++..+++  +.+++|.++.+.+.-   
T Consensus       191 ~~~tSGSGSGlplLVQRTia-rqI~L~e~IGkGRyGEVwrG~w--rGe~VAVKiF~srdE--~SWfrEtEIYqTvmL---  262 (513)
T KOG2052|consen  191 DLETSGSGSGLPLLVQRTIA-RQIVLQEIIGKGRFGEVWRGRW--RGEDVAVKIFSSRDE--RSWFRETEIYQTVML---  262 (513)
T ss_pred             hhccCCCCCCchhHhHHhhh-heeEEEEEecCccccceeeccc--cCCceEEEEecccch--hhhhhHHHHHHHHHh---
Confidence            33455667888999999997 7999999999999999999977  488999999988765  789999999998753   


Q ss_pred             CCcceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhC-------Ccc
Q 013220           95 SNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHREL-------GII  166 (447)
Q Consensus        95 ~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~-------gIi  166 (447)
                       .|.||+.++++=.....+--++|||.+|. .|+|++++.+.   .++.+...+++..++.||++||...       .|.
T Consensus       263 -RHENILgFIaaD~~~~gs~TQLwLvTdYHe~GSL~DyL~r~---tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIA  338 (513)
T KOG2052|consen  263 -RHENILGFIAADNKDNGSWTQLWLVTDYHEHGSLYDYLNRN---TVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIA  338 (513)
T ss_pred             -ccchhhhhhhccccCCCceEEEEEeeecccCCcHHHHHhhc---cCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhh
Confidence             89999999997554433335899999999 89999999763   4899999999999999999999742       589


Q ss_pred             cccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCc
Q 013220          167 HTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPER  246 (447)
Q Consensus       167 H~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (447)
                      |||||..||||                                                                     
T Consensus       339 HRDlKSKNILV---------------------------------------------------------------------  349 (513)
T KOG2052|consen  339 HRDLKSKNILV---------------------------------------------------------------------  349 (513)
T ss_pred             ccccccccEEE---------------------------------------------------------------------
Confidence            99999999999                                                                     


Q ss_pred             cCCCcccceeEeecCcccccc-------cccccCCCCCCccChHHhhcCC----C-C-ccchhHhHHHHHHHHhhC----
Q 013220          247 CLDGIDMRCKVVDFGNACRAN-------KQFAEEIQTRQYRAPEVILRAG----Y-S-FSVDMWSFACTAFELATG----  309 (447)
Q Consensus       247 ~~~~~~~~~kL~Dfg~a~~~~-------~~~~~~~gt~~y~aPE~l~~~~----~-~-~~~DiwSlGvil~~l~~g----  309 (447)
                         ..++.+.++|+|+|....       -+....+||.+|||||++....    + + ..+||||||+|+|++...    
T Consensus       350 ---Kkn~~C~IADLGLAv~h~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~g  426 (513)
T KOG2052|consen  350 ---KKNGTCCIADLGLAVRHDSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESG  426 (513)
T ss_pred             ---ccCCcEEEeeceeeEEecccCCcccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcC
Confidence               557789999999996433       3355679999999999997642    3 2 459999999999998764    


Q ss_pred             ------CCCCCCCCCCCCCCchHHHHHHHHH---hCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCC
Q 013220          310 ------DMLFAPKSGQGFCEDEDHLALMMEL---IGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRF  380 (447)
Q Consensus       310 ------~~Pf~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (447)
                            +.||.+.-..  ..+..+|..++.+   ....|..|                                     .
T Consensus       427 gi~eey~~Pyyd~Vp~--DPs~eeMrkVVCv~~~RP~ipnrW-------------------------------------~  467 (513)
T KOG2052|consen  427 GIVEEYQLPYYDVVPS--DPSFEEMRKVVCVQKLRPNIPNRW-------------------------------------K  467 (513)
T ss_pred             CEehhhcCCcccCCCC--CCCHHHHhcceeecccCCCCCccc-------------------------------------c
Confidence                  4677654211  1233333333321   11111111                                     1


Q ss_pred             ChhhHHHHHHHHhhccccCCCCCCChHHH
Q 013220          381 SETDAREFAEFLVPLLDFTPEKRPTAQQC  409 (447)
Q Consensus       381 ~~~~~~~l~~ll~~~L~~dP~kRpta~el  409 (447)
                      ..+....+..+++.||..||..|.||-.+
T Consensus       468 s~~~l~~m~klMkeCW~~Np~aRltALri  496 (513)
T KOG2052|consen  468 SDPALRVMAKLMKECWYANPAARLTALRI  496 (513)
T ss_pred             cCHHHHHHHHHHHHhhcCCchhhhHHHHH
Confidence            22345577899999999999999998554

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1e-32  Score=260.27  Aligned_cols=263  Identities=23%  Similarity=0.338  Sum_probs=214.2

Q ss_pred             cCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH----hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           34 NGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ----FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        34 ~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~----~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      +-+.|.+.+.||.|+|+.|-++++..+.+.||+|++++.-.    ..+-...|-.+.....     +||.+|.+..+|..
T Consensus       248 ~l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~as-----n~pflvglhscfqt  322 (593)
T KOG0695|consen  248 GLQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQAS-----NNPFLVGLHSCFQT  322 (593)
T ss_pred             ccccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhcc-----CCCeEEehhhhhcc
Confidence            34679999999999999999999999999999999886532    2233455666666654     89999999999984


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                          ...+++|.||+ ||+|-..+.+.  +.++++.++.+...|+.||.|||+. |||.||+|.+|+|+           
T Consensus       323 ----esrlffvieyv~ggdlmfhmqrq--rklpeeharfys~ei~lal~flh~r-giiyrdlkldnvll-----------  384 (593)
T KOG0695|consen  323 ----ESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEICLALNFLHER-GIIYRDLKLDNVLL-----------  384 (593)
T ss_pred             ----cceEEEEEEEecCcceeeehhhh--hcCcHHHhhhhhHHHHHHHHHHhhc-CeeeeeccccceEE-----------
Confidence                47899999999 88887777654  4599999999999999999999997 99999999999999           


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccc--
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA--  266 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~--  266 (447)
                                                                                   +..+.+||.|+|.++.-  
T Consensus       385 -------------------------------------------------------------daeghikltdygmcke~l~  403 (593)
T KOG0695|consen  385 -------------------------------------------------------------DAEGHIKLTDYGMCKEGLG  403 (593)
T ss_pred             -------------------------------------------------------------ccCCceeecccchhhcCCC
Confidence                                                                         66889999999999742  


Q ss_pred             -ccccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          267 -NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       267 -~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                       .+..+.+|||+-|.|||++.+..|.+.+|.|+|||+|++|++|+.||.---...  .+...-+.+              
T Consensus       404 ~gd~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n--~d~ntedyl--------------  467 (593)
T KOG0695|consen  404 PGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDN--PDMNTEDYL--------------  467 (593)
T ss_pred             CCcccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcceecCCC--cccchhHHH--------------
Confidence             234456899999999999999999999999999999999999999996432110  011111111              


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC------ChHHHhcCccccccc
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP------TAQQCLQHPWLSLRN  419 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp------ta~elL~hp~f~~~~  419 (447)
                                              +.-++..+.++|+..+-.+..+|+.-|..||.+|.      -..++-.|+||+...
T Consensus       468 ------------------------fqvilekqiriprslsvkas~vlkgflnkdp~erlgc~~~~g~~dik~h~ffr~id  523 (593)
T KOG0695|consen  468 ------------------------FQVILEKQIRIPRSLSVKASHVLKGFLNKDPKERLGCRPQTGFSDIKSHAFFRSID  523 (593)
T ss_pred             ------------------------HHHHhhhcccccceeehhhHHHHHHhhcCCcHHhcCCCcccchhhhhcchhhhhCC
Confidence                                    23355566678888888888999999999999996      368999999999664


Q ss_pred             C
Q 013220          420 S  420 (447)
Q Consensus       420 ~  420 (447)
                      =
T Consensus       524 w  524 (593)
T KOG0695|consen  524 W  524 (593)
T ss_pred             H
Confidence            3

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=100.00  E-value=8.3e-34  Score=294.33  Aligned_cols=270  Identities=25%  Similarity=0.333  Sum_probs=201.1

Q ss_pred             eEEEEeecccCceE-EEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcce
Q 013220           38 YIAQRKLGWGQFSI-VWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQH  116 (447)
Q Consensus        38 y~l~~~lG~G~~g~-Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~  116 (447)
                      |.-.+.+|.|+.|+ ||+|..  .++.||||.+...  ......+|+.+|+.-+     .|+|||+++..=.    +.++
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~y--e~R~VAVKrll~e--~~~~A~rEi~lL~eSD-----~H~NviRyyc~E~----d~qF  577 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGVY--EGREVAVKRLLEE--FFDFAQREIQLLQESD-----EHPNVIRYYCSEQ----DRQF  577 (903)
T ss_pred             eccHHHcccCCCCcEEEEEee--CCceehHHHHhhH--hHHHHHHHHHHHHhcc-----CCCceEEEEeecc----CCce
Confidence            34445689999984 999954  5789999965543  3457789999999987     9999999998754    3479


Q ss_pred             EEEEEecccccHHHHHHhh-ccCCCCH-HHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          117 LCMVLEFLGDSLLRLIKYS-RYKGLEL-NKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       117 ~~lvmE~~~~~L~~~~~~~-~~~~l~~-~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      .||..|.|.-+|.+++... ....+.. -..+.+..|++.||++||+ ++|||||+||.||||.....            
T Consensus       578 ~YIalELC~~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHs-l~iVHRDLkPQNILI~~~~~------------  644 (903)
T KOG1027|consen  578 LYIALELCACSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHS-LKIVHRDLKPQNILISVPSA------------  644 (903)
T ss_pred             EEEEehHhhhhHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHh-cccccccCCCceEEEEccCC------------
Confidence            9999999999999988753 1111111 3457889999999999999 69999999999999965311            


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-----
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-----  269 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-----  269 (447)
                                                                             +...+++|+|||+|++....     
T Consensus       645 -------------------------------------------------------~~~~ra~iSDfglsKkl~~~~sS~~  669 (903)
T KOG1027|consen  645 -------------------------------------------------------DGTLRAKISDFGLSKKLAGGKSSFS  669 (903)
T ss_pred             -------------------------------------------------------CcceeEEecccccccccCCCcchhh
Confidence                                                                   33578999999999876532     


Q ss_pred             -cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhC-CCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          270 -FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATG-DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       270 -~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g-~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                       .....||..|+|||++...+-+.++||+||||++|+.++| ..||.+....+                           
T Consensus       670 r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~R~---------------------------  722 (903)
T KOG1027|consen  670 RLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLERQ---------------------------  722 (903)
T ss_pred             cccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCchHHhh---------------------------
Confidence             2233689999999999998888999999999999998875 89997652100                           


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcC---CChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCCccc
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYR---FSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE  424 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~~~~  424 (447)
                                             ..|+.....   +....-.++.|||.+||+++|.+||+|.++|.||||=....+..-
T Consensus       723 -----------------------~NIl~~~~~L~~L~~~~d~eA~dLI~~ml~~dP~~RPsa~~VL~HPlFW~~ekrL~F  779 (903)
T KOG1027|consen  723 -----------------------ANILTGNYTLVHLEPLPDCEAKDLISRMLNPDPQLRPSATDVLNHPLFWDSEKRLSF  779 (903)
T ss_pred             -----------------------hhhhcCccceeeeccCchHHHHHHHHHhcCCCcccCCCHHHHhCCCccCChHHHHHH
Confidence                                   001111110   111111178899999999999999999999999999877666655


Q ss_pred             ccccCCceeecccc
Q 013220          425 TKNKSNVEKVDVGM  438 (447)
Q Consensus       425 ~~~~~~~~~~~~~~  438 (447)
                      .+..|+........
T Consensus       780 l~dvSDRvE~e~r~  793 (903)
T KOG1027|consen  780 LRDVSDRVEKENRD  793 (903)
T ss_pred             HHhhhhhhhhhhcc
Confidence            55555554444333

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.9e-32  Score=291.92  Aligned_cols=247  Identities=21%  Similarity=0.330  Sum_probs=200.0

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCC-----eEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTS-----SYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~-----~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      ..+-++.+.||+|.||.||.|+.....     ..||+|.++..  ......|.+|..+|..+      +|||||+++++.
T Consensus       691 ~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f------~HpNiv~liGv~  764 (1025)
T KOG1095|consen  691 RKNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKF------DHPNIVSLIGVC  764 (1025)
T ss_pred             hhheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcC------CCcceeeEEEee
Confidence            467889999999999999999755433     34899987754  44566899999999999      899999999998


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhc-----cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecC
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSR-----YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTI  181 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~-----~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~  181 (447)
                      ...    ...+|++||| +|+|.+++...+     ...+.......++.+|+.|+.||+++ +.|||||-.+|+|+    
T Consensus       765 l~~----~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~-~fvHRDLAaRNCLL----  835 (1025)
T KOG1095|consen  765 LDS----GPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESK-HFVHRDLAARNCLL----  835 (1025)
T ss_pred             cCC----CCcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhC-CCcCcchhhhheee----
Confidence            864    5788999999 999999997652     23488999999999999999999996 99999999999999    


Q ss_pred             CCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecC
Q 013220          182 DPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFG  261 (447)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg  261 (447)
                                                                                          +....+|++|||
T Consensus       836 --------------------------------------------------------------------~~~r~VKIaDFG  847 (1025)
T KOG1095|consen  836 --------------------------------------------------------------------DERRVVKIADFG  847 (1025)
T ss_pred             --------------------------------------------------------------------cccCcEEEcccc
Confidence                                                                                345779999999


Q ss_pred             ccccccccc-ccC----CCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHh
Q 013220          262 NACRANKQF-AEE----IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELI  335 (447)
Q Consensus       262 ~a~~~~~~~-~~~----~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~  335 (447)
                      +|.-+-... ...    .-+..|||||.+....|+.|+|||||||++||+++ |..||++.+      +.+.+...++  
T Consensus       848 lArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~------n~~v~~~~~~--  919 (1025)
T KOG1095|consen  848 LARDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRS------NFEVLLDVLE--  919 (1025)
T ss_pred             hhHhhhhchheeccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcc------hHHHHHHHHh--
Confidence            997332211 111    22568999999999999999999999999999997 899998764      2222221111  


Q ss_pred             CCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          336 GKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       336 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                             ..+.+.|+.+++.+-+++..||+.+|++||++..|++
T Consensus       920 ---------------------------------------ggRL~~P~~CP~~ly~lM~~CW~~~pe~RP~F~~i~~  956 (1025)
T KOG1095|consen  920 ---------------------------------------GGRLDPPSYCPEKLYQLMLQCWKHDPEDRPSFRTIVE  956 (1025)
T ss_pred             ---------------------------------------CCccCCCCCCChHHHHHHHHHccCChhhCccHHHHHh
Confidence                                                   1133456778889999999999999999999999986

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2e-33  Score=273.11  Aligned_cols=268  Identities=27%  Similarity=0.389  Sum_probs=207.1

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH--------hHHHHHHHHHHHHHhhcCCCCCcceeeeeccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ--------FAQAALHEIEVLSAVADGDPSNEKCVIRLIDH  106 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~--------~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~  106 (447)
                      +.||.++..||.|+|+.||+|-|....+.||+|+-..++.        .....-+|.++.+.|      +|+.||++|++
T Consensus       462 n~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeL------DHpRIVKlYDy  535 (775)
T KOG1151|consen  462 NDRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKEL------DHPRIVKLYDY  535 (775)
T ss_pred             HHHHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhcc------Ccceeeeeeee
Confidence            3799999999999999999999999999999997543332        234566789999999      88999999999


Q ss_pred             ccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhh-CCcccccCCCCCeEeeecCCCC
Q 013220          107 FKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRE-LGIIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       107 ~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~-~gIiH~Dikp~Nill~~~~~~~  184 (447)
                      |..   +.+.+|-|+||| |.+|...++..  +.+++++++.|+.||+.||.||... ..|||-|+||.|||+..-    
T Consensus       536 fsl---DtdsFCTVLEYceGNDLDFYLKQh--klmSEKEARSIiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~G----  606 (775)
T KOG1151|consen  536 FSL---DTDSFCTVLEYCEGNDLDFYLKQH--KLMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNG----  606 (775)
T ss_pred             eee---ccccceeeeeecCCCchhHHHHhh--hhhhHHHHHHHHHHHHHHHHHHhccCCCeeeeccCCccEEEecC----
Confidence            976   347899999999 77777666644  4599999999999999999999973 479999999999999431    


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                       ..-+.+|+.|||+++
T Consensus       607 -----------------------------------------------------------------tacGeIKITDFGLSK  621 (775)
T KOG1151|consen  607 -----------------------------------------------------------------TACGEIKITDFGLSK  621 (775)
T ss_pred             -----------------------------------------------------------------cccceeEeeecchhh
Confidence                                                                             123579999999998


Q ss_pred             cccccc----------ccCCCCCCccChHHhhcC--C--CCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHH
Q 013220          265 RANKQF----------AEEIQTRQYRAPEVILRA--G--YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLAL  330 (447)
Q Consensus       265 ~~~~~~----------~~~~gt~~y~aPE~l~~~--~--~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~  330 (447)
                      .++...          ....||.||++||.+...  +  .+.++|+||+|||+|+.+.|+-||.....         -+.
T Consensus       622 IMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqs---------QQd  692 (775)
T KOG1151|consen  622 IMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQS---------QQD  692 (775)
T ss_pred             hccCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCchh---------HHH
Confidence            776432          223689999999998643  2  57899999999999999999999975421         111


Q ss_pred             HHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhh-hcCCC--hhhHHHHHHHHhhccccCCCCCCChH
Q 013220          331 MMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVD-KYRFS--ETDAREFAEFLVPLLDFTPEKRPTAQ  407 (447)
Q Consensus       331 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~l~~ll~~~L~~dP~kRpta~  407 (447)
                      +++.-                                    .++.. ...||  +-++.++.+||++||++--++|....
T Consensus       693 ILqeN------------------------------------TIlkAtEVqFP~KPvVsseAkaFIRRCLaYRKeDR~DV~  736 (775)
T KOG1151|consen  693 ILQEN------------------------------------TILKATEVQFPPKPVVSSEAKAFIRRCLAYRKEDRIDVQ  736 (775)
T ss_pred             HHhhh------------------------------------chhcceeccCCCCCccCHHHHHHHHHHHHhhhhhhhhHH
Confidence            11110                                    00000 00122  23567899999999999999999999


Q ss_pred             HHhcCcccccccCCcccccc
Q 013220          408 QCLQHPWLSLRNSTRDETKN  427 (447)
Q Consensus       408 elL~hp~f~~~~~~~~~~~~  427 (447)
                      ++..||+|..+.-+...+..
T Consensus       737 qLA~dpyllPh~rrs~s~gs  756 (775)
T KOG1151|consen  737 QLACDPYLLPHIRRSVSTGS  756 (775)
T ss_pred             HHccCccccchhhhccccCC
Confidence            99999999986544444433

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.97  E-value=1.3e-30  Score=270.64  Aligned_cols=273  Identities=19%  Similarity=0.270  Sum_probs=181.5

Q ss_pred             cCCceEEEEeecccCceEEEEEEeC----------------CCCeEEEEEEechhHHh---------------HHHHHHH
Q 013220           34 NGGRYIAQRKLGWGQFSIVWLAYDT----------------RTSSYVALKIQKSAAQF---------------AQAALHE   82 (447)
Q Consensus        34 ~~~~y~l~~~lG~G~~g~Vy~a~~~----------------~~~~~vaiK~~~~~~~~---------------~~~~~~E   82 (447)
                      ..++|.+.++||+|+||+||+|...                ..++.||||.++.....               .+....|
T Consensus       143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE  222 (507)
T PLN03224        143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVE  222 (507)
T ss_pred             cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHH
Confidence            4578999999999999999999642                23567999987643211               1123346


Q ss_pred             HHHHHHhhcCCCCCcceeeeecccccccCC----CcceEEEEEecc-cccHHHHHHhhc---------------------
Q 013220           83 IEVLSAVADGDPSNEKCVIRLIDHFKHAGP----NGQHLCMVLEFL-GDSLLRLIKYSR---------------------  136 (447)
Q Consensus        83 ~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~----~~~~~~lvmE~~-~~~L~~~~~~~~---------------------  136 (447)
                      +.++..+.+.. ..+.++++++++|.....    +....++||||+ +++|.+++....                     
T Consensus       223 ~~~l~~l~~~~-l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~  301 (507)
T PLN03224        223 AYMCAKIKRNP-IAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNM  301 (507)
T ss_pred             HHHHHHhhccc-chhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhc
Confidence            66666665432 134566777777664322    234689999999 888888775321                     


Q ss_pred             -cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHH
Q 013220          137 -YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVE  215 (447)
Q Consensus       137 -~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (447)
                       ...++...++.++.|++.+|+|||+. +|+||||||+||++                                      
T Consensus       302 ~~~~~~~~~~~~i~~ql~~aL~~lH~~-~ivHrDLKp~NILl--------------------------------------  342 (507)
T PLN03224        302 PQDKRDINVIKGVMRQVLTGLRKLHRI-GIVHRDIKPENLLV--------------------------------------  342 (507)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCchHhEEE--------------------------------------
Confidence             01235567888999999999999996 99999999999999                                      


Q ss_pred             HHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc--cc--CCCCCCccChHHhhcCC--
Q 013220          216 KKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF--AE--EIQTRQYRAPEVILRAG--  289 (447)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~--~~--~~gt~~y~aPE~l~~~~--  289 (447)
                                                        +....++|+|||++.......  ..  ..+++.|+|||.+....  
T Consensus       343 ----------------------------------~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aPE~l~~~~~~  388 (507)
T PLN03224        343 ----------------------------------TVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPPEELVMPQSC  388 (507)
T ss_pred             ----------------------------------CCCCcEEEEeCcCccccccCCccCccccCCCcceeChhhhcCCCCC
Confidence                                              335679999999986433211  11  23478999999985321  


Q ss_pred             ------------------C--CccchhHhHHHHHHHHhhCCC-CCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          290 ------------------Y--SFSVDMWSFACTAFELATGDM-LFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       290 ------------------~--~~~~DiwSlGvil~~l~~g~~-Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                                        |  ..+.|+||+||++|+|++|.. ||.......         ...+........|      
T Consensus       389 ~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~---------~~~~~~~~~~~~~------  453 (507)
T PLN03224        389 PRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFN---------TELRQYDNDLNRW------  453 (507)
T ss_pred             CccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhh---------hHHhhccchHHHH------
Confidence                              1  135799999999999999875 664321000         0000000000000      


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhc--CCChhhHHHHHHHHhhccccCC---CCCCChHHHhcCccccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKY--RFSETDAREFAEFLVPLLDFTP---EKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~ll~~~L~~dP---~kRpta~elL~hp~f~~  417 (447)
                                            ........  ......++...|||.+||..+|   .+|+|++|+|+||||..
T Consensus       454 ----------------------r~~~~~~~~~~~~d~~s~~~~dLi~~LL~~~~~~~~~RlSa~eaL~Hp~f~~  505 (507)
T PLN03224        454 ----------------------RMYKGQKYDFSLLDRNKEAGWDLACKLITKRDQANRGRLSVGQALSHRFFLP  505 (507)
T ss_pred             ----------------------HhhcccCCCcccccccChHHHHHHHHHhccCCCCcccCCCHHHHhCCCCcCC
Confidence                                  00000011  1223456789999999999876   68999999999999964

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.97  E-value=1.2e-30  Score=244.84  Aligned_cols=239  Identities=36%  Similarity=0.553  Sum_probs=189.8

Q ss_pred             CceEEEEEEeCCCCeEEEEEEechhHHh--HHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEEEecc-
Q 013220           48 QFSIVWLAYDTRTSSYVALKIQKSAAQF--AQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-  124 (447)
Q Consensus        48 ~~g~Vy~a~~~~~~~~vaiK~~~~~~~~--~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-  124 (447)
                      +||.||+|.+..+++.+++|++......  .+.+.+|++.++.+      +|++|+++++.+...    ...+++|||+ 
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l------~~~~i~~~~~~~~~~----~~~~l~~e~~~   70 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKL------KHPNIVRLYDVFEDE----DKLYLVMEYCD   70 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhC------CCCcHHHHHhheeeC----CEEEEEEeCCC
Confidence            5899999999888999999987754322  47888999999999      788999999988753    6899999999 


Q ss_pred             cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCC
Q 013220          125 GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSIN  204 (447)
Q Consensus       125 ~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (447)
                      +++|...+....  .++...+..++.+++.++.+||+. +++|+||+|+||++.                          
T Consensus        71 ~~~L~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lh~~-~i~h~~i~~~ni~~~--------------------------  121 (244)
T smart00220       71 GGDLFDLLKKRG--RLSEDEARFYARQILSALEYLHSN-GIIHRDLKPENILLD--------------------------  121 (244)
T ss_pred             CCCHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHHc-CeecCCcCHHHeEEC--------------------------
Confidence            559998886543  278899999999999999999996 999999999999993                          


Q ss_pred             CCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--cccCCCCCCccCh
Q 013220          205 GGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FAEEIQTRQYRAP  282 (447)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--~~~~~gt~~y~aP  282 (447)
                                                                    ....++|+|||.+......  .....++..|+||
T Consensus       122 ----------------------------------------------~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~p  155 (244)
T smart00220      122 ----------------------------------------------EDGHVKLADFGLARQLDPGGLLTTFVGTPEYMAP  155 (244)
T ss_pred             ----------------------------------------------CCCcEEEccccceeeeccccccccccCCcCCCCH
Confidence                                                          3467999999999765542  3445678899999


Q ss_pred             HHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhh
Q 013220          283 EVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRI  362 (447)
Q Consensus       283 E~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (447)
                      |.+.+..++.++|+||||++++++++|..||....      +   ...+.+.+.......                    
T Consensus       156 E~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~------~---~~~~~~~~~~~~~~~--------------------  206 (244)
T smart00220      156 EVLLGKGYGKAVDVWSLGVILYELLTGKPPFPGDD------Q---LLELFKKIGKPKPPF--------------------  206 (244)
T ss_pred             HHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC------c---HHHHHHHHhccCCCC--------------------
Confidence            99988888999999999999999999999996531      1   111222111111000                    


Q ss_pred             hhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          363 RRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                                     .......+.++.+++.+||..+|++||++.++++||||
T Consensus       207 ---------------~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~~~~~~~  244 (244)
T smart00220      207 ---------------PPPEWKISPEAKDLIRKLLVKDPEKRLTAEEALQHPFF  244 (244)
T ss_pred             ---------------ccccccCCHHHHHHHHHHccCCchhccCHHHHhhCCCC
Confidence                           00000145688999999999999999999999999997

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.97  E-value=6.9e-31  Score=264.00  Aligned_cols=244  Identities=22%  Similarity=0.333  Sum_probs=205.3

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcce
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQH  116 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~  116 (447)
                      ...+.++||-|.||.||-|.+++-...||||.++.+....++|..|..+|+.+      .|+|+|++++++...    ..
T Consensus       268 dItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtMeveEFLkEAAvMKei------kHpNLVqLLGVCT~E----pP  337 (1157)
T KOG4278|consen  268 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEI------KHPNLVQLLGVCTHE----PP  337 (1157)
T ss_pred             heeeeeccCCCcccceeeeeeeccceeeehhhhhhcchhHHHHHHHHHHHHhh------cCccHHHHhhhhccC----CC
Confidence            46789999999999999999999999999999999999999999999999999      899999999999864    68


Q ss_pred             EEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCC
Q 013220          117 LCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI  195 (447)
Q Consensus       117 ~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~  195 (447)
                      +|||.||| -|.|++++.......++.-....++.||..|++||..+ +.||||+-.+|+|++                 
T Consensus       338 FYIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkk-nFIHRDLAARNCLVg-----------------  399 (1157)
T KOG4278|consen  338 FYIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKK-NFIHRDLAARNCLVG-----------------  399 (1157)
T ss_pred             eEEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHh-hhhhhhhhhhhcccc-----------------
Confidence            99999999 88888888776656677677888999999999999998 999999999999994                 


Q ss_pred             cCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-cccCC
Q 013220          196 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-FAEEI  274 (447)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-~~~~~  274 (447)
                                                                             .+-.+|++|||++..+... .+...
T Consensus       400 -------------------------------------------------------EnhiVKvADFGLsRlMtgDTYTAHA  424 (1157)
T KOG4278|consen  400 -------------------------------------------------------ENHIVKVADFGLSRLMTGDTYTAHA  424 (1157)
T ss_pred             -------------------------------------------------------ccceEEeeccchhhhhcCCceeccc
Confidence                                                                   3567999999999866533 23334


Q ss_pred             C---CCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          275 Q---TRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       275 g---t~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      |   +.-|.|||.+....++.|+|+|+|||+||++.+ |..||++.+          +..++.++.+.-           
T Consensus       425 GAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGid----------lSqVY~LLEkgy-----------  483 (1157)
T KOG4278|consen  425 GAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGID----------LSQVYGLLEKGY-----------  483 (1157)
T ss_pred             CccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCcc----------HHHHHHHHhccc-----------
Confidence            4   567999999999999999999999999999986 999998763          223333221100           


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHh
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCL  410 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL  410 (447)
                                                +..-|..+++.+..|++.||+++|.+||++.|+-
T Consensus       484 --------------------------RM~~PeGCPpkVYeLMraCW~WsPsDRPsFaeiH  517 (1157)
T KOG4278|consen  484 --------------------------RMDGPEGCPPKVYELMRACWNWSPSDRPSFAEIH  517 (1157)
T ss_pred             --------------------------cccCCCCCCHHHHHHHHHHhcCCcccCccHHHHH
Confidence                                      1124567788999999999999999999998874

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.97  E-value=7.9e-31  Score=262.53  Aligned_cols=252  Identities=23%  Similarity=0.349  Sum_probs=202.7

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      ++..+.++||+|.||.|-+|.-. .+..||+|.++.++  .....|.+|+++|..+      .||||+++++++...   
T Consensus       538 s~L~~~ekiGeGqFGEVhLCeve-g~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqL------khPNIveLvGVC~~D---  607 (807)
T KOG1094|consen  538 SRLRFKEKIGEGQFGEVHLCEVE-GPLKVAVKILRPDATKNARNDFLKEIKILSRL------KHPNIVELLGVCVQD---  607 (807)
T ss_pred             hheehhhhhcCcccceeEEEEec-CceEEEEeecCcccchhHHHHHHHHHHHHhcc------CCCCeeEEEeeeecC---
Confidence            56789999999999999999753 36899999887654  3457899999999999      899999999999854   


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                       +.++++|||| .|+|.+++....-..++-+....++.||+.|++||.+ +++||||+-+.|||+               
T Consensus       608 -ePicmI~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes-~nfVHrd~a~rNcLv---------------  670 (807)
T KOG1094|consen  608 -DPLCMITEYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLES-LNFVHRDLATRNCLV---------------  670 (807)
T ss_pred             -CchHHHHHHHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHh-hchhhccccccceee---------------
Confidence             7899999999 8999999987643334455667799999999999999 699999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccc-
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA-  271 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~-  271 (447)
                                                                               +.++++|++|||.+...-.... 
T Consensus       671 ---------------------------------------------------------~~e~~iKiadfgmsR~lysg~yy  693 (807)
T KOG1094|consen  671 ---------------------------------------------------------DGEFTIKIADFGMSRNLYSGDYY  693 (807)
T ss_pred             ---------------------------------------------------------cCcccEEecCcccccccccCCce
Confidence                                                                     6688999999999974332222 


Q ss_pred             ----cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh--CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          272 ----EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT--GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       272 ----~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~--g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                          +.+-+..|+|||.+.-..+|+++|+|+|||++|+++.  ..-||...      ++++.++..-.++...+....  
T Consensus       694 ~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~l------t~e~vven~~~~~~~~~~~~~--  765 (807)
T KOG1094|consen  694 RVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQL------TDEQVVENAGEFFRDQGRQVV--  765 (807)
T ss_pred             eeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhh------hHHHHHHhhhhhcCCCCccee--
Confidence                2245789999999999999999999999999999875  66888665      455555555554444332211  


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                      +.-|.-++..+.+++.+||..|-++||+++++..
T Consensus       766 --------------------------------l~~P~~cp~~lyelml~Cw~~es~~RPsFe~lh~  799 (807)
T KOG1094|consen  766 --------------------------------LSRPPACPQGLYELMLRCWRRESEQRPSFEQLHL  799 (807)
T ss_pred             --------------------------------ccCCCcCcHHHHHHHHHHhchhhhcCCCHHHHHH
Confidence                                            1234455678889999999999999999999854

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=2.4e-30  Score=292.14  Aligned_cols=260  Identities=15%  Similarity=0.234  Sum_probs=185.2

Q ss_pred             ccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           28 RVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        28 ~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      ..++..  ..|...+.||+|+||.||+|++..++..||+|.+.....   ....|+++++.+      +||||+++++++
T Consensus       684 ~~~~~~--~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~l~~l------~HpnIv~~~~~~  752 (968)
T PLN00113        684 TINDIL--SSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNS---IPSSEIADMGKL------QHPNIVKLIGLC  752 (968)
T ss_pred             hHHHHH--hhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCcc---ccHHHHHHHhhC------CCCCcceEEEEE
Confidence            334444  357778899999999999999988999999998764322   223567888887      899999999998


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---hhCCcccccCCCCCeEeeecCCC
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLH---RELGIIHTDLKPENILLVSTIDP  183 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH---~~~gIiH~Dikp~Nill~~~~~~  183 (447)
                      ...    ...++||||+ +++|.+.+.     .+++..+..++.|++.||+|||   +. +|+|||+||+||++..    
T Consensus       753 ~~~----~~~~lv~Ey~~~g~L~~~l~-----~l~~~~~~~i~~~ia~~L~yLH~~~~~-~iiH~dlkp~Nil~~~----  818 (968)
T PLN00113        753 RSE----KGAYLIHEYIEGKNLSEVLR-----NLSWERRRKIAIGIAKALRFLHCRCSP-AVVVGNLSPEKIIIDG----  818 (968)
T ss_pred             EcC----CCCEEEEeCCCCCcHHHHHh-----cCCHHHHHHHHHHHHHHHHHhccCCCC-CeecCCCCHHhEEECC----
Confidence            753    5789999999 889998874     2778889999999999999999   64 9999999999999933    


Q ss_pred             CCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcc
Q 013220          184 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  263 (447)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a  263 (447)
                                                                                          ....++. ++..
T Consensus       819 --------------------------------------------------------------------~~~~~~~-~~~~  829 (968)
T PLN00113        819 --------------------------------------------------------------------KDEPHLR-LSLP  829 (968)
T ss_pred             --------------------------------------------------------------------CCceEEE-eccc
Confidence                                                                                2233332 4333


Q ss_pred             cccccccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhh
Q 013220          264 CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  343 (447)
Q Consensus       264 ~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  343 (447)
                      ..... .....++..|+|||++.+..++.++|||||||++|+|++|+.||......    ................    
T Consensus       830 ~~~~~-~~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~----~~~~~~~~~~~~~~~~----  900 (968)
T PLN00113        830 GLLCT-DTKCFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGV----HGSIVEWARYCYSDCH----  900 (968)
T ss_pred             ccccc-CCCccccccccCcccccCCCCCcccchhhHHHHHHHHHhCCCCCCcccCC----CCcHHHHHHHhcCccc----
Confidence            22111 12336789999999999888999999999999999999999999533110    1111111100000000    


Q ss_pred             hCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          344 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                           ....                 .+..+......+.....++.+++.+||+.||++|||++|+++.
T Consensus       901 -----~~~~-----------------~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~~P~~RPt~~evl~~  947 (968)
T PLN00113        901 -----LDMW-----------------IDPSIRGDVSVNQNEIVEVMNLALHCTATDPTARPCANDVLKT  947 (968)
T ss_pred             -----hhhe-----------------eCccccCCCCccHHHHHHHHHHHHhhCcCCchhCcCHHHHHHH
Confidence                 0000                 0111111122334456678899999999999999999999876

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=3e-30  Score=253.56  Aligned_cols=197  Identities=27%  Similarity=0.378  Sum_probs=162.4

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      ....++.+.||+|+||.||+|..  .++.||||++.....  +.+.+|-++......    .|+||++++++=..-....
T Consensus       209 l~pl~l~eli~~Grfg~V~KaqL--~~~~VAVKifp~~~k--qs~~~Ek~Iy~lp~m----~h~nIl~Fi~~ekr~t~~~  280 (534)
T KOG3653|consen  209 LDPLQLLELIGRGRFGCVWKAQL--DNRLVAVKIFPEQEK--QSFQNEKNIYSLPGM----KHENILQFIGAEKRGTADR  280 (534)
T ss_pred             CCchhhHHHhhcCccceeehhhc--cCceeEEEecCHHHH--HHHHhHHHHHhccCc----cchhHHHhhchhccCCccc
Confidence            35678999999999999999954  569999998876654  778889988888743    8999999998755432234


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhC--------CcccccCCCCCeEeeecCCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHREL--------GIIHTDLKPENILLVSTIDPSK  185 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~--------gIiH~Dikp~Nill~~~~~~~~  185 (447)
                      ...+||++|. .|+|.+++..+.   ++.....+++.-|+.||+|||+..        .|+|||||.+|||+        
T Consensus       281 ~eywLVt~fh~kGsL~dyL~~nt---isw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLv--------  349 (534)
T KOG3653|consen  281 MEYWLVTEFHPKGSLCDYLKANT---ISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLV--------  349 (534)
T ss_pred             cceeEEeeeccCCcHHHHHHhcc---ccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEE--------
Confidence            5899999999 899999997643   899999999999999999999842        69999999999999        


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccc
Q 013220          186 DPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR  265 (447)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~  265 (447)
                                                                                      ..++.+.|+|||+|..
T Consensus       350 ----------------------------------------------------------------K~DlTccIaDFGLAl~  365 (534)
T KOG3653|consen  350 ----------------------------------------------------------------KNDLTCCIADFGLALR  365 (534)
T ss_pred             ----------------------------------------------------------------ccCCcEEeeccceeEE
Confidence                                                                            5578899999999976


Q ss_pred             ccc-----ccccCCCCCCccChHHhhcCC-CC-----ccchhHhHHHHHHHHhhCCCCCC
Q 013220          266 ANK-----QFAEEIQTRQYRAPEVILRAG-YS-----FSVDMWSFACTAFELATGDMLFA  314 (447)
Q Consensus       266 ~~~-----~~~~~~gt~~y~aPE~l~~~~-~~-----~~~DiwSlGvil~~l~~g~~Pf~  314 (447)
                      ...     .....+||.+|||||++++.. +.     .+.||||+|.|+|++++....+.
T Consensus       366 ~~p~~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~  425 (534)
T KOG3653|consen  366 LEPGKPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDAD  425 (534)
T ss_pred             ecCCCCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            541     223368999999999998752 22     46999999999999999876553

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.97  E-value=2.3e-30  Score=260.65  Aligned_cols=241  Identities=22%  Similarity=0.326  Sum_probs=195.0

Q ss_pred             eEEEEeecccCceEEEEEEeCCC----CeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           38 YIAQRKLGWGQFSIVWLAYDTRT----SSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        38 y~l~~~lG~G~~g~Vy~a~~~~~----~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ..+.++||.|.||.||.|.....    +--||||.-|.+  ....+.|..|.-+++.+      +||||+++++++..  
T Consensus       391 Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnf------dHphIikLIGv~~e--  462 (974)
T KOG4257|consen  391 ITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNF------DHPHIIKLIGVCVE--  462 (974)
T ss_pred             ccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhC------CCcchhheeeeeec--
Confidence            45667899999999999954322    345888976664  34567899999999999      89999999999976  


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                         ..+|||||.+ -|.|..++..+. ..++......+++||+.||+|||++ ..|||||-.+|||++.           
T Consensus       463 ---~P~WivmEL~~~GELr~yLq~nk-~sL~l~tL~ly~~Qi~talaYLeSk-rfVHRDIAaRNiLVsS-----------  526 (974)
T KOG4257|consen  463 ---QPMWIVMELAPLGELREYLQQNK-DSLPLRTLTLYCYQICTALAYLESK-RFVHRDIAARNILVSS-----------  526 (974)
T ss_pred             ---cceeEEEecccchhHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHHHhh-chhhhhhhhhheeecC-----------
Confidence               5899999999 788888886654 4588889999999999999999997 9999999999999944           


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF  270 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~  270 (447)
                                                                                   ..++||+|||++...++..
T Consensus       527 -------------------------------------------------------------p~CVKLaDFGLSR~~ed~~  545 (974)
T KOG4257|consen  527 -------------------------------------------------------------PQCVKLADFGLSRYLEDDA  545 (974)
T ss_pred             -------------------------------------------------------------cceeeecccchhhhccccc
Confidence                                                                         5679999999998766543


Q ss_pred             ccC--C--CCCCccChHHhhcCCCCccchhHhHHHHHHHHh-hCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          271 AEE--I--QTRQYRAPEVILRAGYSFSVDMWSFACTAFELA-TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       271 ~~~--~--gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~-~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                      ...  .  -+.-|+|||.+...+++.++|+|=|||.||+++ .|.-||.+-.....             +|...      
T Consensus       546 yYkaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkNsDV-------------I~~iE------  606 (974)
T KOG4257|consen  546 YYKASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKNSDV-------------IGHIE------  606 (974)
T ss_pred             hhhccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCccccccccce-------------EEEec------
Confidence            222  2  256799999999999999999999999999986 59999976632211             11100      


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHh
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCL  410 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL  410 (447)
                                                  ..++++.|+++++.+..|+.+||..||.+||+++++.
T Consensus       607 ----------------------------nGeRlP~P~nCPp~LYslmskcWayeP~kRPrftei~  643 (974)
T KOG4257|consen  607 ----------------------------NGERLPCPPNCPPALYSLMSKCWAYEPSKRPRFTEIK  643 (974)
T ss_pred             ----------------------------CCCCCCCCCCCChHHHHHHHHHhccCcccCCcHHHHH
Confidence                                        1245567889999999999999999999999998875

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=1.3e-30  Score=265.40  Aligned_cols=255  Identities=20%  Similarity=0.263  Sum_probs=205.3

Q ss_pred             cccCCceEEEEeecccCceEEEEEEeCCC---CeEEEEEEechhHH--hHHHHHHHHHHHHHhhcCCCCCcceeeeeccc
Q 013220           32 LFNGGRYIAQRKLGWGQFSIVWLAYDTRT---SSYVALKIQKSAAQ--FAQAALHEIEVLSAVADGDPSNEKCVIRLIDH  106 (447)
Q Consensus        32 ~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~---~~~vaiK~~~~~~~--~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~  106 (447)
                      ++..++..+.|+||+|.||.||+|.+...   ...||||+++.+..  ....|.+|+.+|..+      .|+|++++|++
T Consensus       106 lIpee~i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L------~H~hliRLyGv  179 (1039)
T KOG0199|consen  106 LIPEEQIKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKL------QHPHLIRLYGV  179 (1039)
T ss_pred             eccHHHHHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhc------cCcceeEEeee
Confidence            45567788899999999999999987754   34699999887754  357899999999999      89999999999


Q ss_pred             ccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCC
Q 013220          107 FKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK  185 (447)
Q Consensus       107 ~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~  185 (447)
                      ..+     ..+.+|||.+ .|+|.+-+.......|-......++.||+.|+.||.++ ++||||+-.+|+++-       
T Consensus       180 Vl~-----qp~mMV~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLesk-rlvHRDLAARNllla-------  246 (1039)
T KOG0199|consen  180 VLD-----QPAMMVFELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESK-RLVHRDLAARNLLLA-------  246 (1039)
T ss_pred             ecc-----chhhHHhhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhh-hhhhhhhhhhhheec-------
Confidence            875     4788999999 88888877654445678889999999999999999998 999999999999993       


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccc
Q 013220          186 DPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR  265 (447)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~  265 (447)
                                                                                       ....+|++|||+...
T Consensus       247 -----------------------------------------------------------------sprtVKI~DFGLmRa  261 (1039)
T KOG0199|consen  247 -----------------------------------------------------------------SPRTVKICDFGLMRA  261 (1039)
T ss_pred             -----------------------------------------------------------------ccceeeeecccceec
Confidence                                                                             345699999999987


Q ss_pred             cccccccCC------CCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCC
Q 013220          266 ANKQFAEEI------QTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKM  338 (447)
Q Consensus       266 ~~~~~~~~~------gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~  338 (447)
                      .......++      -+..|+|||.+....++.++|+|++||++|+|++ |.-||.+-.      -.    .|++.+.  
T Consensus       262 Lg~ned~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~------g~----qIL~~iD--  329 (1039)
T KOG0199|consen  262 LGENEDMYVMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCR------GI----QILKNID--  329 (1039)
T ss_pred             cCCCCcceEecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCC------HH----HHHHhcc--
Confidence            665444432      2568999999999999999999999999999997 789997763      11    1111111  


Q ss_pred             CHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccc
Q 013220          339 PRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~  417 (447)
                                                         -.++..-++.+++++.+++..||..+|++|||+..|.+.-+...
T Consensus       330 -----------------------------------~~erLpRPk~csedIY~imk~cWah~paDRptFsair~~~~l~e  373 (1039)
T KOG0199|consen  330 -----------------------------------AGERLPRPKYCSEDIYQIMKNCWAHNPADRPTFSAIREDLVLAE  373 (1039)
T ss_pred             -----------------------------------ccccCCCCCCChHHHHHHHHHhccCCccccccHHHHHHhHHHHh
Confidence                                               01122235567899999999999999999999999876655544

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.96  E-value=4.3e-31  Score=268.06  Aligned_cols=261  Identities=28%  Similarity=0.404  Sum_probs=209.7

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHh-HHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQF-AQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~-~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      ++|.+..++|+|+||.||+|+++.+++..|+|+++..... ..-...|+-+++..      .|+||+.|++.|...    
T Consensus        15 ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc------~h~nivay~gsylr~----   84 (829)
T KOG0576|consen   15 DDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDC------RHPNIVAYFGSYLRR----   84 (829)
T ss_pred             cchhheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecC------CCcChHHHHhhhhhh----
Confidence            6799999999999999999999999999999999877532 34566677777777      899999999998854    


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      +.+|++|||| |++|.+.+.  ....+++.++...++..+.+|+|||+. |=+|||||..||++++              
T Consensus        85 dklwicMEycgggslQdiy~--~TgplselqiayvcRetl~gl~ylhs~-gk~hRdiKGanilltd--------------  147 (829)
T KOG0576|consen   85 DKLWICMEYCGGGSLQDIYH--VTGPLSELQIAYVCRETLQGLKYLHSQ-GKIHRDIKGANILLTD--------------  147 (829)
T ss_pred             cCcEEEEEecCCCcccceee--ecccchhHHHHHHHhhhhccchhhhcC-Ccccccccccceeecc--------------
Confidence            7899999999 778877653  345689999999999999999999995 9999999999999944              


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---c
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---F  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~  270 (447)
                                                                                .+.+||.|||.+-.+...   .
T Consensus       148 ----------------------------------------------------------~gDvklaDfgvsaqitati~Kr  169 (829)
T KOG0576|consen  148 ----------------------------------------------------------EGDVKLADFGVSAQITATIAKR  169 (829)
T ss_pred             ----------------------------------------------------------cCceeecccCchhhhhhhhhhh
Confidence                                                                      677999999998665533   2


Q ss_pred             ccCCCCCCccChHHhh---cCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          271 AEEIQTRQYRAPEVIL---RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~---~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                      ..+.||++|+|||+..   ...|...+|||++|++..++..-+.|....       +....-.++...|..|..+...  
T Consensus       170 ksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplfdl-------hpmr~l~LmTkS~~qpp~lkDk--  240 (829)
T KOG0576|consen  170 KSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLFDL-------HPMRALFLMTKSGFQPPTLKDK--  240 (829)
T ss_pred             hcccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCccccc-------chHHHHHHhhccCCCCCcccCC--
Confidence            3458999999999975   346899999999999999999888886543       3444444455444444332100  


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCCccc
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE  424 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~~~~  424 (447)
                                                        ..-++.|.+|++.+|..+|.||||++.+|.|||+...-+++..
T Consensus       241 ----------------------------------~kws~~fh~fvK~altknpKkRptaeklL~h~fvs~~l~~rl~  283 (829)
T KOG0576|consen  241 ----------------------------------TKWSEFFHNFVKGALTKNPKKRPTAEKLLQHPFVSQTLSRRLA  283 (829)
T ss_pred             ----------------------------------ccchHHHHHHHHHHhcCCCccCCChhhheeceeeccchhhHHH
Confidence                                              1125578899999999999999999999999999987544443

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.96  E-value=3.1e-30  Score=265.65  Aligned_cols=246  Identities=19%  Similarity=0.301  Sum_probs=202.1

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCC---eEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTS---SYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~---~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      ...++.+.||.|.||.|++|+.+..+   ..||||.+|..  ++...+|+.|..||-.+      +||||+++.++....
T Consensus       629 s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQF------dHPNIIrLEGVVTks  702 (996)
T KOG0196|consen  629 SCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQF------DHPNIIRLEGVVTKS  702 (996)
T ss_pred             hheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccC------CCCcEEEEEEEEecC
Confidence            34678889999999999999877654   68999998854  55577899999999999      899999999998865


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                          ..+.||.||| .++|..++..+. ..|..-++.-+.+.|+.|++||-+ +|+|||||-.+|||+            
T Consensus       703 ----~PvMIiTEyMENGsLDsFLR~~D-GqftviQLVgMLrGIAsGMkYLsd-m~YVHRDLAARNILV------------  764 (996)
T KOG0196|consen  703 ----KPVMIITEYMENGSLDSFLRQND-GQFTVIQLVGMLRGIASGMKYLSD-MNYVHRDLAARNILV------------  764 (996)
T ss_pred             ----ceeEEEhhhhhCCcHHHHHhhcC-CceEeehHHHHHHHHHHHhHHHhh-cCchhhhhhhhheee------------
Confidence                6899999999 899999987654 448888888999999999999998 799999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                  +.+..+|++|||++...++.
T Consensus       765 ------------------------------------------------------------NsnLvCKVsDFGLSRvledd  784 (996)
T KOG0196|consen  765 ------------------------------------------------------------NSNLVCKVSDFGLSRVLEDD  784 (996)
T ss_pred             ------------------------------------------------------------ccceEEEeccccceeecccC
Confidence                                                                        45788999999999866433


Q ss_pred             c-ccC---CC--CCCccChHHhhcCCCCccchhHhHHHHHHHHh-hCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh
Q 013220          270 F-AEE---IQ--TRQYRAPEVILRAGYSFSVDMWSFACTAFELA-TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  342 (447)
Q Consensus       270 ~-~~~---~g--t~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~-~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (447)
                      . ..+   -|  +.+|.|||.|....+|.++|+||+|++||+.+ .|.-||.+.+      +.+.+..+.+-...     
T Consensus       785 ~~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdmS------NQdVIkaIe~gyRL-----  853 (996)
T KOG0196|consen  785 PEAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMS------NQDVIKAIEQGYRL-----  853 (996)
T ss_pred             CCccccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCcccccc------hHHHHHHHHhccCC-----
Confidence            2 222   12  47899999999999999999999999999977 5999998774      33444444332211     


Q ss_pred             hhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                          +-|-.++..+..|+..||++|-..||+++||+++
T Consensus       854 ------------------------------------PpPmDCP~aL~qLMldCWqkdR~~RP~F~qiV~~  887 (996)
T KOG0196|consen  854 ------------------------------------PPPMDCPAALYQLMLDCWQKDRNRRPKFAQIVST  887 (996)
T ss_pred             ------------------------------------CCCCCCcHHHHHHHHHHHHHHhhcCCCHHHHHHH
Confidence                                                2233568899999999999999999999999754

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.96  E-value=1e-29  Score=226.15  Aligned_cols=201  Identities=22%  Similarity=0.397  Sum_probs=167.3

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      +...-.++||.|++|.|-+-++..+|...|+|.+..+.  +......+|+.+..+..     ..|.+|.+|+.+...   
T Consensus        46 d~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~-----~CPf~V~FyGa~~re---  117 (282)
T KOG0984|consen   46 DDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTV-----DCPFTVHFYGALFRE---  117 (282)
T ss_pred             hhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCC-----CCCeEEEeehhhhcc---
Confidence            34456678999999999999999999999999876543  33456677777766654     889999999987753   


Q ss_pred             cceEEEEEecccccHHHHHHh--hccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          114 GQHLCMVLEFLGDSLLRLIKY--SRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       114 ~~~~~lvmE~~~~~L~~~~~~--~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                       ..+|+.||.|..+|..+...  .....++|.-+-+++..++.||.|||+++.+||||+||.|||+              
T Consensus       118 -gdvwIcME~M~tSldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL~vIHRDvKPsNiLI--------------  182 (282)
T KOG0984|consen  118 -GDVWICMELMDTSLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKLSVIHRDVKPSNILI--------------  182 (282)
T ss_pred             -ccEEEeHHHhhhhHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHhhhhhccCCcceEEE--------------
Confidence             57999999998888877643  2334589999999999999999999999999999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccc
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA  271 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~  271 (447)
                                                                                +..+++|+||||++-...++..
T Consensus       183 ----------------------------------------------------------n~~GqVKiCDFGIsG~L~dSiA  204 (282)
T KOG0984|consen  183 ----------------------------------------------------------NYDGQVKICDFGISGYLVDSIA  204 (282)
T ss_pred             ----------------------------------------------------------ccCCcEEEcccccceeehhhhH
Confidence                                                                      5578999999999965554433


Q ss_pred             c--CCCCCCccChHHhhc----CCCCccchhHhHHHHHHHHhhCCCCCCCCC
Q 013220          272 E--EIQTRQYRAPEVILR----AGYSFSVDMWSFACTAFELATGDMLFAPKS  317 (447)
Q Consensus       272 ~--~~gt~~y~aPE~l~~----~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~  317 (447)
                      .  ..|...|+|||.+..    ..|+-++||||||+++.+|.++++||....
T Consensus       205 kt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~w~  256 (282)
T KOG0984|consen  205 KTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYESWG  256 (282)
T ss_pred             HHHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhccccccccC
Confidence            2  468899999999863    368999999999999999999999997653

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.96  E-value=1e-29  Score=254.34  Aligned_cols=198  Identities=23%  Similarity=0.429  Sum_probs=174.7

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHH---------HHHHHHHHHHhhcCCCCCcceeeeeccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQA---------ALHEIEVLSAVADGDPSNEKCVIRLIDH  106 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~---------~~~E~~~l~~l~~~~~~~~~~Iv~~~~~  106 (447)
                      ..|.....+|+|+||.||+|.++.....|+||++.+.....+.         +-.|+++|..+...   .|+||++++++
T Consensus       561 s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~---sH~NIlKlLdf  637 (772)
T KOG1152|consen  561 SDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKH---SHENILKLLDF  637 (772)
T ss_pred             ccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhc---Cccchhhhhhe
Confidence            5699999999999999999999999999999998877654443         44599999999654   69999999999


Q ss_pred             ccccCCCcceEEEEEecc--cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCC
Q 013220          107 FKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       107 ~~~~~~~~~~~~lvmE~~--~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~  184 (447)
                      |.+.    ++.||+||..  |-+|++++...  ..++|.++..|++|++.|+++||+. ||||||||-+|+.+       
T Consensus       638 FEdd----d~yyl~te~hg~gIDLFd~IE~k--p~m~E~eAk~IFkQV~agi~hlh~~-~ivhrdikdenviv-------  703 (772)
T KOG1152|consen  638 FEDD----DYYYLETEVHGEGIDLFDFIEFK--PRMDEPEAKLIFKQVVAGIKHLHDQ-GIVHRDIKDENVIV-------  703 (772)
T ss_pred             eecC----CeeEEEecCCCCCcchhhhhhcc--CccchHHHHHHHHHHHhcccccccc-CceecccccccEEE-------
Confidence            9964    7999999999  56899999755  4499999999999999999999995 99999999999999       


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                       +.++.+||+|||.+.
T Consensus       704 -----------------------------------------------------------------d~~g~~klidfgsaa  718 (772)
T KOG1152|consen  704 -----------------------------------------------------------------DSNGFVKLIDFGSAA  718 (772)
T ss_pred             -----------------------------------------------------------------ecCCeEEEeeccchh
Confidence                                                                             668899999999885


Q ss_pred             -ccccccccCCCCCCccChHHhhcCCC-CccchhHhHHHHHHHHhhCCCCCCC
Q 013220          265 -RANKQFAEEIQTRQYRAPEVILRAGY-SFSVDMWSFACTAFELATGDMLFAP  315 (447)
Q Consensus       265 -~~~~~~~~~~gt~~y~aPE~l~~~~~-~~~~DiwSlGvil~~l~~g~~Pf~~  315 (447)
                       ....+...++||..|.|||++-|.+| +..-|||+||+++|.++....||++
T Consensus       719 ~~ksgpfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpyyn  771 (772)
T KOG1152|consen  719 YTKSGPFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYYN  771 (772)
T ss_pred             hhcCCCcceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCcC
Confidence             44567778899999999999999888 5779999999999999999999864

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.95  E-value=1.2e-28  Score=227.36  Aligned_cols=263  Identities=20%  Similarity=0.247  Sum_probs=195.9

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      .+.|.+.+.||+|.||.+-+|+|+.++..+++|.....-....+|.+|...--.|.     .|.||+.-|++-.   .+.
T Consensus        23 ~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~tt~~dF~rEfhY~~~Ls-----~H~hIi~tY~vaF---qt~   94 (378)
T KOG1345|consen   23 EDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQTTQADFVREFHYSFFLS-----PHQHIIDTYEVAF---QTS   94 (378)
T ss_pred             hhhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcchhhHHHHHHHhccceeec-----cchhhhHHHHHHh---hcC
Confidence            47899999999999999999999999999999987766666778888887655554     7889887776432   244


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      +..+++|||+ -|+|.+-+..   .++.+...+.++.|+++||.|||++ +|||||||.+|||+-.              
T Consensus        95 d~YvF~qE~aP~gdL~snv~~---~GigE~~~K~v~~ql~SAi~fMHsk-nlVHRdlK~eNiLif~--------------  156 (378)
T KOG1345|consen   95 DAYVFVQEFAPRGDLRSNVEA---AGIGEANTKKVFAQLLSAIEFMHSK-NLVHRDLKAENILIFD--------------  156 (378)
T ss_pred             ceEEEeeccCccchhhhhcCc---ccccHHHHHHHHHHHHHHHHHhhcc-chhhcccccceEEEec--------------
Confidence            7899999999 7888876643   5688999999999999999999998 9999999999999955              


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccccC
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEE  273 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~~~  273 (447)
                                                                              ....++||||||.+.+.+......
T Consensus       157 --------------------------------------------------------~df~rvKlcDFG~t~k~g~tV~~~  180 (378)
T KOG1345|consen  157 --------------------------------------------------------ADFYRVKLCDFGLTRKVGTTVKYL  180 (378)
T ss_pred             --------------------------------------------------------CCccEEEeeecccccccCceehhh
Confidence                                                                    224589999999998776655444


Q ss_pred             CCCCCccChHHhhcC---C--CCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          274 IQTRQYRAPEVILRA---G--YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       274 ~gt~~y~aPE~l~~~---~--~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      --+..|.+||.....   .  ..+..|+|.||+++|.+++|++||......    +..-...+.=.-++.+         
T Consensus       181 ~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~~~----d~~Y~~~~~w~~rk~~---------  247 (378)
T KOG1345|consen  181 EYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKASIM----DKPYWEWEQWLKRKNP---------  247 (378)
T ss_pred             hhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchhhhcc----CchHHHHHHHhcccCc---------
Confidence            456789999987632   2  367899999999999999999999743211    1111111000000000         


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCC---CChHHHhcCccccccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKR---PTAQQCLQHPWLSLRN  419 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kR---pta~elL~hp~f~~~~  419 (447)
                                                 .-++.-...++.+..+.++-|.++|++|   .+++..-...|..-..
T Consensus       248 ---------------------------~~P~~F~~fs~~a~r~Fkk~lt~~~~drcki~~~kk~rk~~w~E~~i  294 (378)
T KOG1345|consen  248 ---------------------------ALPKKFNPFSEKALRLFKKSLTPRFKDRCKIWTAKKMRKCLWKEKLI  294 (378)
T ss_pred             ---------------------------cCchhhcccCHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHhhh
Confidence                                       0001112235567778889999999999   7888887777775443

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.95  E-value=2e-26  Score=210.39  Aligned_cols=208  Identities=39%  Similarity=0.623  Sum_probs=177.6

Q ss_pred             ecccCceEEEEEEeCCCCeEEEEEEechhHH--hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEEE
Q 013220           44 LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ--FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVL  121 (447)
Q Consensus        44 lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~--~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvm  121 (447)
                      ||+|.+|.||++.+..+++.+++|++.....  ..+.+.+|+++++.+      .|++|+++++.+...    ...+++|
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l------~~~~i~~~~~~~~~~----~~~~~~~   70 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKL------NHPNIVKLYGVFEDE----NHLYLVM   70 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhc------CCCCeeeEeeeeecC----CeEEEEE
Confidence            6899999999999988899999998876654  256789999999999      568999999998754    6899999


Q ss_pred             ecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCC
Q 013220          122 EFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPE  200 (447)
Q Consensus       122 E~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~  200 (447)
                      |++ +.+|.+++.... ..++...+..++.+++.++++||+. |++|+||+|.||++..                     
T Consensus        71 e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lh~~-~~~H~dl~~~ni~~~~---------------------  127 (215)
T cd00180          71 EYCEGGSLKDLLKENE-GKLSEDEILRILLQILEGLEYLHSN-GIIHRDLKPENILLDS---------------------  127 (215)
T ss_pred             ecCCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCHhhEEEeC---------------------
Confidence            999 589998886542 3478899999999999999999996 9999999999999932                     


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---cccCCCCC
Q 013220          201 GSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEIQTR  277 (447)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~~~~~gt~  277 (447)
                                                                        ....++|+|||.+......   .....+..
T Consensus       128 --------------------------------------------------~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~  157 (215)
T cd00180         128 --------------------------------------------------DNGKVKLADFGLSKLLTSDKSLLKTIVGTP  157 (215)
T ss_pred             --------------------------------------------------CCCcEEEecCCceEEccCCcchhhcccCCC
Confidence                                                              0457999999998765543   33456788


Q ss_pred             CccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhccc
Q 013220          278 QYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH  356 (447)
Q Consensus       278 ~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  356 (447)
                      .|.+||.+... .++.+.|+|++|++++++                                                  
T Consensus       158 ~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l--------------------------------------------------  187 (215)
T cd00180         158 AYMAPEVLLGKGYYSEKSDIWSLGVILYEL--------------------------------------------------  187 (215)
T ss_pred             CccChhHhcccCCCCchhhhHHHHHHHHHH--------------------------------------------------
Confidence            99999999877 788999999999999998                                                  


Q ss_pred             chhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCc
Q 013220          357 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP  413 (447)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp  413 (447)
                                                   ..+.+++.+||+.||++||++.++++|+
T Consensus       188 -----------------------------~~~~~~l~~~l~~~p~~R~~~~~l~~~~  215 (215)
T cd00180         188 -----------------------------PELKDLIRKMLQKDPEKRPSAKEILEHL  215 (215)
T ss_pred             -----------------------------HHHHHHHHHHhhCCcccCcCHHHHhhCC
Confidence                                         0567899999999999999999999885

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.95  E-value=5.8e-27  Score=250.62  Aligned_cols=247  Identities=22%  Similarity=0.362  Sum_probs=191.8

Q ss_pred             ceEEEEeecccCceEEEEEEeC---C----CCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDT---R----TSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~---~----~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      +..+.+.||+|.||.||+|...   .    ....||+|.++...  ...+.+..|+++++.+.     .|+||+.+++++
T Consensus       297 ~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g-----~H~niv~llG~~  371 (609)
T KOG0200|consen  297 NLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELG-----KHPNIVNLLGAC  371 (609)
T ss_pred             hccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhc-----CCcchhhheeee
Confidence            3467779999999999999532   1    25689999887554  33568899999999997     899999999998


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhc------c--------CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCC
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSR------Y--------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKP  172 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~------~--------~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp  172 (447)
                      ..    ...+++|+||+ .|+|..++...+      .        ..+.......++.||+.|++||+++ .+||||+-.
T Consensus       372 t~----~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~-~~vHRDLAa  446 (609)
T KOG0200|consen  372 TQ----DGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASV-PCVHRDLAA  446 (609)
T ss_pred             cc----CCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhC-Cccchhhhh
Confidence            86    36899999999 889998887655      0        1277889999999999999999997 999999999


Q ss_pred             CCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcc
Q 013220          173 ENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGID  252 (447)
Q Consensus       173 ~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (447)
                      +|||+.                                                                        .+
T Consensus       447 RNVLi~------------------------------------------------------------------------~~  454 (609)
T KOG0200|consen  447 RNVLIT------------------------------------------------------------------------KN  454 (609)
T ss_pred             hhEEec------------------------------------------------------------------------CC
Confidence            999993                                                                        45


Q ss_pred             cceeEeecCccccccccc-cc---CCC--CCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCch
Q 013220          253 MRCKVVDFGNACRANKQF-AE---EIQ--TRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDE  325 (447)
Q Consensus       253 ~~~kL~Dfg~a~~~~~~~-~~---~~g--t~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~  325 (447)
                      ..+|++|||+++...... ..   ..+  +..|+|||.+....|+.++|+||+||+||++++ |..||++..     ...
T Consensus       455 ~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~-----~~~  529 (609)
T KOG0200|consen  455 KVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIP-----PTE  529 (609)
T ss_pred             CEEEEccccceeccCCCCceEecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCC-----cHH
Confidence            679999999997433221 11   122  445999999999899999999999999999997 889997531     011


Q ss_pred             HHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCC
Q 013220          326 DHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT  405 (447)
Q Consensus       326 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpt  405 (447)
                      ..+.    .+..                                     ..+..-|...++++.++++.||+.+|++||+
T Consensus       530 ~l~~----~l~~-------------------------------------G~r~~~P~~c~~eiY~iM~~CW~~~p~~RP~  568 (609)
T KOG0200|consen  530 ELLE----FLKE-------------------------------------GNRMEQPEHCSDEIYDLMKSCWNADPEDRPT  568 (609)
T ss_pred             HHHH----HHhc-------------------------------------CCCCCCCCCCCHHHHHHHHHHhCCCcccCCC
Confidence            1111    1100                                     0111244556778889999999999999999


Q ss_pred             hHHHhc
Q 013220          406 AQQCLQ  411 (447)
Q Consensus       406 a~elL~  411 (447)
                      +.++..
T Consensus       569 F~~~~~  574 (609)
T KOG0200|consen  569 FSECVE  574 (609)
T ss_pred             HHHHHH
Confidence            998863

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.95  E-value=2.4e-27  Score=245.21  Aligned_cols=244  Identities=21%  Similarity=0.294  Sum_probs=194.4

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCC----CeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRT----SSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~----~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      .-..+..++||+|+||+||+|.+...    +-.||||++....  ....++.+|+-+|..+      +|+|++++++++.
T Consensus       695 Etelkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masl------dHpnl~RLLgvc~  768 (1177)
T KOG1025|consen  695 ETELKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASL------DHPNLLRLLGVCM  768 (1177)
T ss_pred             hhhhhhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcC------CCchHHHHhhhcc
Confidence            34566778899999999999977654    4478888766543  3467889999999999      8999999999998


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCc
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                      .+     .+-||.+|+ .|+|.+++...+ ..+..+....|++||++|+.|||.+ +++||||-.+|+||          
T Consensus       769 ~s-----~~qlvtq~mP~G~LlDyvr~hr-~~igsq~lLnw~~QIAkgM~YLe~q-rlVHrdLaaRNVLV----------  831 (1177)
T KOG1025|consen  769 LS-----TLQLVTQLMPLGCLLDYVREHR-DNIGSQDLLNWCYQIAKGMKYLEEQ-RLVHRDLAARNVLV----------  831 (1177)
T ss_pred             cc-----hHHHHHHhcccchHHHHHHHhh-ccccHHHHHHHHHHHHHHHHHHHhc-chhhhhhhhhheee----------
Confidence            75     488999999 899999987655 4688899999999999999999996 99999999999999          


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                    .....+|+.|||+++...
T Consensus       832 --------------------------------------------------------------ksP~hvkitdfgla~ll~  849 (1177)
T KOG1025|consen  832 --------------------------------------------------------------KSPNHVKITDFGLAKLLA  849 (1177)
T ss_pred             --------------------------------------------------------------cCCCeEEEEecchhhccC
Confidence                                                                          335679999999998655


Q ss_pred             cccccC---CC--CCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          268 KQFAEE---IQ--TRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       268 ~~~~~~---~g--t~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                      .....+   .|  ...|+|-|.+...+|+.++|+||+||++|+++| |.-||.+.+.       ..+..+++.       
T Consensus       850 ~d~~ey~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~-------~eI~dlle~-------  915 (1177)
T KOG1025|consen  850 PDEKEYSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPA-------EEIPDLLEK-------  915 (1177)
T ss_pred             cccccccccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCCH-------HHhhHHHhc-------
Confidence            443332   12  567999999999999999999999999999986 8999977641       111111111       


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHh
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCL  410 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL  410 (447)
                                                       .++..-|+..+-++-.++.+||..|+..||+++++.
T Consensus       916 ---------------------------------geRLsqPpiCtiDVy~~mvkCwmid~~~rp~fkel~  951 (1177)
T KOG1025|consen  916 ---------------------------------GERLSQPPICTIDVYMVMVKCWMIDADSRPTFKELA  951 (1177)
T ss_pred             ---------------------------------cccCCCCCCccHHHHHHHHHHhccCcccCccHHHHH
Confidence                                             011234555677888999999999999999998875

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.94  E-value=1.7e-26  Score=255.25  Aligned_cols=217  Identities=17%  Similarity=0.198  Sum_probs=147.1

Q ss_pred             ceeeeecccccccCC---CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCC
Q 013220           98 KCVIRLIDHFKHAGP---NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPEN  174 (447)
Q Consensus        98 ~~Iv~~~~~~~~~~~---~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~N  174 (447)
                      .||.++++.|....+   ....++++||+++++|.+.+... ...+++..++.+++||+.||+|||++ ||+||||||+|
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~-gIvHrDlKP~N  110 (793)
T PLN00181         33 DYVRSLLGSHKEGNLDGLDDDSIVRALECEDVSLRQWLDNP-DRSVDAFECFHVFRQIVEIVNAAHSQ-GIVVHNVRPSC  110 (793)
T ss_pred             HHHHHhhcccCCccccccccchhhhhhccCCccHHHHHhcc-cccccHHHHHHHHHHHHHHHHHHHhC-CeeeccCCchh
Confidence            356666666533221   22468899999989999988643 34589999999999999999999996 99999999999


Q ss_pred             eEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccc
Q 013220          175 ILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMR  254 (447)
Q Consensus       175 ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (447)
                      ||+.....  -..++.+..                                                 ..  ...+....
T Consensus       111 iLl~~~~~--~k~~d~~~~-------------------------------------------------~~--~~~~~~~~  137 (793)
T PLN00181        111 FVMSSFNH--VSFIESASC-------------------------------------------------SD--SGSDEDAT  137 (793)
T ss_pred             EEEcccCc--EEEeecccc-------------------------------------------------Cc--ccccccCc
Confidence            99953110  000000000                                                 00  00023456


Q ss_pred             eeEeecCccccccc-------------------ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCC
Q 013220          255 CKVVDFGNACRANK-------------------QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAP  315 (447)
Q Consensus       255 ~kL~Dfg~a~~~~~-------------------~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~  315 (447)
                      +|++|||++.....                   .....+||++|+|||++.+..|+.++|||||||++|+|++|..|+..
T Consensus       138 ~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~  217 (793)
T PLN00181        138 TKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREE  217 (793)
T ss_pred             ccccccccccccccccccchhhhhccccCCCcccccccCCCcceEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhh
Confidence            89999999864211                   00113578999999999998999999999999999999998877642


Q ss_pred             CCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhc
Q 013220          316 KSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPL  395 (447)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~  395 (447)
                      .        ...+..+...  ..+..                                      ... ......+++.+|
T Consensus       218 ~--------~~~~~~~~~~--~~~~~--------------------------------------~~~-~~~~~~~~~~~~  248 (793)
T PLN00181        218 K--------SRTMSSLRHR--VLPPQ--------------------------------------ILL-NWPKEASFCLWL  248 (793)
T ss_pred             H--------HHHHHHHHHh--hcChh--------------------------------------hhh-cCHHHHHHHHHh
Confidence            1        0111111000  00000                                      000 122355888999


Q ss_pred             cccCCCCCCChHHHhcCcccccc
Q 013220          396 LDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       396 L~~dP~kRpta~elL~hp~f~~~  418 (447)
                      |++||.+|||+.|+|+||||...
T Consensus       249 L~~~P~~Rps~~eil~h~~~~~~  271 (793)
T PLN00181        249 LHPEPSCRPSMSELLQSEFINEP  271 (793)
T ss_pred             CCCChhhCcChHHHhhchhhhhh
Confidence            99999999999999999999864

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.93  E-value=6.5e-25  Score=204.14  Aligned_cols=194  Identities=35%  Similarity=0.532  Sum_probs=164.1

Q ss_pred             eEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH--hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           38 YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ--FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        38 y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~--~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      |.+.+.||.|++|+||++.+..+++.+|+|.+.....  ....+.+|++.++.+      .|++++++++.+...    .
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~------~~~~i~~~~~~~~~~----~   70 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKL------KHPNIVKLYGVFEDP----E   70 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhC------CCCChhhheeeeecC----C
Confidence            6778999999999999999988899999998775432  466888899999999      788899999987643    6


Q ss_pred             eEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          116 HLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       116 ~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      ..+++||++ +++|.+.+..... .+++..+..++.+++.++.+||+. +++|+|++|.||+++                
T Consensus        71 ~~~~v~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lh~~-~i~h~di~~~ni~v~----------------  132 (225)
T smart00221       71 PLYLVMEYCEGGDLFDYLRKKGG-KLSEEEARFYLRQILEALEYLHSL-GIVHRDLKPENILLG----------------  132 (225)
T ss_pred             ceEEEEeccCCCCHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEc----------------
Confidence            899999999 6699888865431 178889999999999999999996 999999999999993                


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc----
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF----  270 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~----  270 (447)
                                                                              ....++|+|||.+.......    
T Consensus       133 --------------------------------------------------------~~~~~~l~d~g~~~~~~~~~~~~~  156 (225)
T smart00221      133 --------------------------------------------------------MDGLVKLADFGLARFIHRDLAALL  156 (225)
T ss_pred             --------------------------------------------------------CCCCEEEeeCceeeEecCcccccc
Confidence                                                                    34679999999987655432    


Q ss_pred             ccCCCCCCccChHHh-hcCCCCccchhHhHHHHHHHHhhCCCCCCC
Q 013220          271 AEEIQTRQYRAPEVI-LRAGYSFSVDMWSFACTAFELATGDMLFAP  315 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l-~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~  315 (447)
                      ....++..|++||.+ ....++.++|+|+||+++++|++|+.||..
T Consensus       157 ~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      157 KTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             cceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence            445678899999998 556778899999999999999999999965

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.92  E-value=8.4e-25  Score=197.28  Aligned_cols=169  Identities=23%  Similarity=0.301  Sum_probs=123.6

Q ss_pred             ccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCC
Q 013220          126 DSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSING  205 (447)
Q Consensus       126 ~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (447)
                      |+|.+++... ...+++..+..++.|++.||+|||++ +      ||+||++.                           
T Consensus         1 GsL~~~l~~~-~~~l~~~~~~~i~~qi~~~L~~lH~~-~------kp~Nil~~---------------------------   45 (176)
T smart00750        1 VSLADILEVR-GRPLNEEEIWAVCLQCLRALRELHRQ-A------KSGNILLT---------------------------   45 (176)
T ss_pred             CcHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhc-C------CcccEeEc---------------------------
Confidence            5677777643 34699999999999999999999996 6      99999993                           


Q ss_pred             CCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccccCCCCCCccChHHh
Q 013220          206 GSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVI  285 (447)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~l  285 (447)
                                                                   .+..+++  ||.+......  ...|++.|+|||++
T Consensus        46 ---------------------------------------------~~~~~~~--fG~~~~~~~~--~~~g~~~y~aPE~~   76 (176)
T smart00750       46 ---------------------------------------------WDGLLKL--DGSVAFKTPE--QSRVDPYFMAPEVI   76 (176)
T ss_pred             ---------------------------------------------Cccceee--ccceEeeccc--cCCCcccccChHHh
Confidence                                                         3456777  9988654432  23689999999999


Q ss_pred             hcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhc
Q 013220          286 LRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRL  365 (447)
Q Consensus       286 ~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (447)
                      .+..++.++|||||||++|+|++|..||.....     ....+..+...   .+...                       
T Consensus        77 ~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~-----~~~~~~~~~~~---~~~~~-----------------------  125 (176)
T smart00750       77 QGQSYTEKADIYSLGITLYEALDYELPYNEERE-----LSAILEILLNG---MPADD-----------------------  125 (176)
T ss_pred             cCCCCcchhhHHHHHHHHHHHHhCCCCccccch-----hcHHHHHHHHH---hccCC-----------------------
Confidence            999999999999999999999999999965421     11111111111   00000                       


Q ss_pred             ccCchhHHhhhhcCCChhhHH--HHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          366 KFWSLDRLLVDKYRFSETDAR--EFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~--~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                               ......+...+.  .+.+||.+||..||++|||+.|+++|+|+...
T Consensus       126 ---------~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~~~  171 (176)
T smart00750      126 ---------PRDRSNLESVSAARSFADFMRVCASRLPQRREAANHYLAHCRALFA  171 (176)
T ss_pred             ---------ccccccHHHHHhhhhHHHHHHHHHhcccccccCHHHHHHHHHHHHH
Confidence                     000001122233  68999999999999999999999999998753

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=1.9e-25  Score=236.65  Aligned_cols=270  Identities=21%  Similarity=0.290  Sum_probs=194.5

Q ss_pred             Cce-EEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRY-IAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y-~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ..| ...+.+|.|++|.|+.+........++.|..+..   ......+..  .+...+--.....|++++..+..+.+. 
T Consensus       317 ~~y~~~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~--~i~sE~~i~~~l~h~~~~e~l~~~~~~-  393 (601)
T KOG0590|consen  317 EKYGKPGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNY--NITSEFCIGSSLSHPNIIETLDIVQEI-  393 (601)
T ss_pred             cccCCccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhh--hhhhheeecccccCCchhhhHHHHhhc-
Confidence            445 5677889999999999887777777777754311   011111111  133333333444889988888777654 


Q ss_pred             CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          112 PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       112 ~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                         ....-+||||..+|+.++.+.  ..+...++..++.|++.|++|+|.. ||.|||+||+|+++.             
T Consensus       394 ---~~~~~~mE~~~~Dlf~~~~~~--~~~~~~e~~c~fKqL~~Gv~y~h~~-GiahrdlK~enll~~-------------  454 (601)
T KOG0590|consen  394 ---DGILQSMEYCPYDLFSLVMSN--GKLTPLEADCFFKQLLRGVKYLHSM-GLAHRDLKLENLLVT-------------  454 (601)
T ss_pred             ---ccchhhhhcccHHHHHHHhcc--cccchhhhhHHHHHHHHHHHHHHhc-CceeccCccccEEEe-------------
Confidence               334444999955999998865  2377888999999999999999995 999999999999993             


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc---
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---  268 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~---  268 (447)
                                                                                 ..+.+|++|||.+.....   
T Consensus       455 -----------------------------------------------------------~~g~lki~Dfg~~~vf~~~~e  475 (601)
T KOG0590|consen  455 -----------------------------------------------------------ENGILKIIDFGAASVFRYPWE  475 (601)
T ss_pred             -----------------------------------------------------------cCCceEEeecCcceeeccCcc
Confidence                                                                       356899999998853321   


Q ss_pred             ----ccccCCCCCCccChHHhhcCCCC-ccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhh
Q 013220          269 ----QFAEEIQTRQYRAPEVILRAGYS-FSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  343 (447)
Q Consensus       269 ----~~~~~~gt~~y~aPE~l~~~~~~-~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  343 (447)
                          .....+|+..|+|||.+.+..|. ..+||||.|+++++|++|++||.........    .    .           
T Consensus       476 ~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~----~----~-----------  536 (601)
T KOG0590|consen  476 KNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNS----F----K-----------  536 (601)
T ss_pred             hhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCccccccccccc----h----h-----------
Confidence                23345899999999999999986 6799999999999999999999766422110    0    0           


Q ss_pred             hCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCCcc
Q 013220          344 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRD  423 (447)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~~~  423 (447)
                                          ...+.....+......+...++.+.+.+|.+||++||++|+|+++|++.+||+....+..
T Consensus       537 --------------------~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~i~~d~W~~~i~~c~v  596 (601)
T KOG0590|consen  537 --------------------TNNYSDQRNIFEGPNRLLSLLPRETRIIIYRMLQLDPTKRITIEQILNDEWIRSIECCHV  596 (601)
T ss_pred             --------------------hhccccccccccChHHHHHhchhhHHHHHHHHccCChhheecHHHHhhChHhhhcceEEe
Confidence                                000011111222222344556788999999999999999999999999999999988776


Q ss_pred             cc
Q 013220          424 ET  425 (447)
Q Consensus       424 ~~  425 (447)
                      +.
T Consensus       597 ~~  598 (601)
T KOG0590|consen  597 DP  598 (601)
T ss_pred             cc
Confidence            53

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.91  E-value=7.3e-24  Score=192.83  Aligned_cols=207  Identities=23%  Similarity=0.331  Sum_probs=168.6

Q ss_pred             CccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           30 GDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        30 g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      .+++-+++|+++++||+|+||.+|+|.....|+.||||+-..++. -..+..|.++.+.|++.-  +-|+|   .-+.. 
T Consensus         9 ~~~iv~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~-hpqL~yEskvY~iL~~g~--GiP~i---~~y~~-   81 (341)
T KOG1163|consen    9 EELIVGGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAK-HPQLLYESKVYRILQGGV--GIPHI---RHYGT-   81 (341)
T ss_pred             hhheeccceEEEEeecCCchhheeeeeeccCCceEEEEeecccCC-CcchhHHHHHHHHhccCC--CCchh---hhhcc-
Confidence            345556899999999999999999999999999999999877665 345778999999998654  33333   33322 


Q ss_pred             cCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          110 AGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                         ++++-.+||+.+|.+|.+++.-.. +.++.+++.-++.||+.-++|+|.+ +.|||||||+|+|.+..         
T Consensus        82 ---e~~ynvlVMdLLGPsLEdLfnfC~-R~ftmkTvLMLaDQml~RiEyvH~r-~fiHRDIKPdNFLMGlg---------  147 (341)
T KOG1163|consen   82 ---EKDYNVLVMDLLGPSLEDLFNFCS-RRFTMKTVLMLADQMLSRIEYVHLR-NFIHRDIKPDNFLMGLG---------  147 (341)
T ss_pred             ---ccccceeeeeccCccHHHHHHHHh-hhhhHHhHHHHHHHHHHHHHHHHhh-ccccccCCccceeeccc---------
Confidence               567899999999999999886544 4589999999999999999999997 99999999999999542         


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                  ..-..+.|+|||+|+..-+.
T Consensus       148 ------------------------------------------------------------rh~~kl~LIDFGLaKky~d~  167 (341)
T KOG1163|consen  148 ------------------------------------------------------------RHCNKLYLIDFGLAKKYRDI  167 (341)
T ss_pred             ------------------------------------------------------------cccceEEEEeccchhhhccc
Confidence                                                                        12345899999999865433


Q ss_pred             c----------ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCC
Q 013220          270 F----------AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKS  317 (447)
Q Consensus       270 ~----------~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~  317 (447)
                      .          ....||-.|.+-....+...+..-|+=|+|.++.+...|..||.+..
T Consensus       168 ~t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglk  225 (341)
T KOG1163|consen  168 RTRQHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGLK  225 (341)
T ss_pred             cccccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccccc
Confidence            2          22368999999888777777889999999999999999999998763

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.91  E-value=1.6e-24  Score=208.70  Aligned_cols=246  Identities=17%  Similarity=0.205  Sum_probs=184.5

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCC-----CeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRT-----SSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~-----~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      ..|+++...+-+|+||.||.|.++..     .+.|.+|..+..+  .....+..|.-++..+      .|+|+..+.++.
T Consensus       283 r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~------sH~nll~V~~V~  356 (563)
T KOG1024|consen  283 RCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGA------SHPNLLSVLGVS  356 (563)
T ss_pred             hhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcC------cCCCccceeEEE
Confidence            47799999999999999999965532     2344555443332  2233445555555555      789999888887


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhcc------CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeec
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSRY------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVST  180 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~------~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~  180 (447)
                      ..   ......+++.++ .+.|..++.-.+.      +.+.--++..++.|+..|++|||+. |+||.||-.+|+++   
T Consensus       357 ie---~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~-~ViHkDiAaRNCvI---  429 (563)
T KOG1024|consen  357 IE---DYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNH-GVIHKDIAARNCVI---  429 (563)
T ss_pred             ee---ccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhc-Ccccchhhhhccee---
Confidence            65   346778888999 6778888763321      2244556778899999999999997 99999999999999   


Q ss_pred             CCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeec
Q 013220          181 IDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDF  260 (447)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Df  260 (447)
                                                                                           +...++||+|-
T Consensus       430 ---------------------------------------------------------------------dd~LqVkltDs  440 (563)
T KOG1024|consen  430 ---------------------------------------------------------------------DDQLQVKLTDS  440 (563)
T ss_pred             ---------------------------------------------------------------------hhheeEEeccc
Confidence                                                                                 44688999999


Q ss_pred             CcccccccccccCCC-----CCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHH
Q 013220          261 GNACRANKQFAEEIQ-----TRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMEL  334 (447)
Q Consensus       261 g~a~~~~~~~~~~~g-----t~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~  334 (447)
                      .++.-.-.......|     +..|||||.+....|+.++|+|||||+||+|++ |+.||..-+.       .++.     
T Consensus       441 aLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~PyaeIDP-------fEm~-----  508 (563)
T KOG1024|consen  441 ALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEIDP-------FEME-----  508 (563)
T ss_pred             hhccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCccccCH-------HHHH-----
Confidence            998654444444444     578999999999999999999999999999997 8999976642       2222     


Q ss_pred             hCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhc--CCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          335 IGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKY--RFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       335 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                           .++.+.+  .-|-++++++..++.-||...|++||+.+|+..
T Consensus       509 -------------------------------------~ylkdGyRlaQP~NCPDeLf~vMacCWallpeeRPsf~Qlv~  550 (563)
T KOG1024|consen  509 -------------------------------------HYLKDGYRLAQPFNCPDELFTVMACCWALLPEERPSFSQLVI  550 (563)
T ss_pred             -------------------------------------HHHhccceecCCCCCcHHHHHHHHHHHhcCcccCCCHHHHHH
Confidence                                                 2222222  245578999999999999999999999999874

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.90  E-value=2.4e-23  Score=197.21  Aligned_cols=203  Identities=21%  Similarity=0.318  Sum_probs=169.2

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      |-.|++.++||+|+||.++.|.+..+++.||||+-....+ .-++..|.+..+.|.+.     ++|...|=    .++.|
T Consensus        27 G~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS~-APQLrdEYr~YKlL~g~-----~GIP~vYY----FGqeG   96 (449)
T KOG1165|consen   27 GPHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKSE-APQLRDEYRTYKLLGGT-----EGIPQVYY----FGQEG   96 (449)
T ss_pred             cccceeccccccCcceeeecccccccCceEEEEeccccCC-cchHHHHHHHHHHHcCC-----CCCCceee----ecccc
Confidence            5789999999999999999999999999999997543332 45788899999999743     44443332    23467


Q ss_pred             ceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          115 QHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       115 ~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      .+-.||||.+|.+|.+++..+. +.|+.+++.-++.||+.-++++|++ .+|.|||||+|+||+...+            
T Consensus        97 ~~NiLVidLLGPSLEDLFD~Cg-R~FSvKTV~miA~Qmi~rie~vH~k-~LIYRDIKPdNFLIGrp~~------------  162 (449)
T KOG1165|consen   97 KYNILVIDLLGPSLEDLFDLCG-RRFSVKTVAMIAKQMITRIEYVHEK-DLIYRDIKPDNFLIGRPGT------------  162 (449)
T ss_pred             chhhhhhhhhCcCHHHHHHHhc-CcccHHhHHHHHHHHHHHHHHHHhc-ceeecccCccceeecCCCC------------
Confidence            8999999999999999998764 4699999999999999999999998 9999999999999966321            


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccccC-
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEE-  273 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~~~-  273 (447)
                                                                             .....+.++|||+|+.+-++.++. 
T Consensus       163 -------------------------------------------------------k~~n~IhiiDFGmAK~YrDp~TkqH  187 (449)
T KOG1165|consen  163 -------------------------------------------------------KDANVIHIIDFGMAKEYRDPKTKQH  187 (449)
T ss_pred             -------------------------------------------------------CCCceEEEEeccchhhhcCcccccc
Confidence                                                                   223458999999998766554432 


Q ss_pred             ---------CCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCC
Q 013220          274 ---------IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPK  316 (447)
Q Consensus       274 ---------~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~  316 (447)
                               .||-.||+-....+...+..-|+=|||=++.+.+.|.+||.+.
T Consensus       188 IPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGL  239 (449)
T KOG1165|consen  188 IPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGL  239 (449)
T ss_pred             CccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCccccc
Confidence                     5899999999888988999999999999999999999999876

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.90  E-value=3.5e-22  Score=198.41  Aligned_cols=207  Identities=26%  Similarity=0.286  Sum_probs=167.0

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCC-eEEEEEEechhHHh-HHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTS-SYVALKIQKSAAQF-AQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~-~~vaiK~~~~~~~~-~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      +|++.++||+|+||.||++.+..++ ..+|+|+....... ...+..|..++..+....  ...++..+++...   ...
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~--~~~~~~~~~~~G~---~~~   93 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKN--GPSHFPKLLDHGR---STE   93 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhc--CCCCCCEEEEecc---CCC
Confidence            8999999999999999999987774 78999987664322 226888999999997511  3356777777664   145


Q ss_pred             ceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          115 QHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       115 ~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      .+-++||+.+|.+|.++......+.++..++..++.|++.+|+++|+. |++||||||+|+++....             
T Consensus        94 ~~~~iVM~l~G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~-G~iHRDiKp~N~~~g~~~-------------  159 (322)
T KOG1164|consen   94 DFNFIVMSLLGPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSK-GFIHRDIKPENFVVGQSS-------------  159 (322)
T ss_pred             ceeEEEEeccCccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhc-CcccCCcCHHHeeecCCC-------------
Confidence            689999999999999988665556799999999999999999999996 999999999999995420             


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc--cccc----
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC--RANK----  268 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~--~~~~----  268 (447)
                                                                            ......+.|.|||++.  ....    
T Consensus       160 ------------------------------------------------------~~~~~~~~llDfGlar~~~~~~~~~~  185 (322)
T KOG1164|consen  160 ------------------------------------------------------RSEVRTLYLLDFGLARRFKYVGDSGG  185 (322)
T ss_pred             ------------------------------------------------------CcccceEEEEecCCCccccccCCCCc
Confidence                                                                  0112468999999997  3210    


Q ss_pred             ----c---cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCC
Q 013220          269 ----Q---FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPK  316 (447)
Q Consensus       269 ----~---~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~  316 (447)
                          +   ...+.||..|.++....+...+.+.|+||++.++.+++.|..||...
T Consensus       186 ~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~  240 (322)
T KOG1164|consen  186 NLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEAL  240 (322)
T ss_pred             ccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccc
Confidence                1   12345999999999999999999999999999999999999999665

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.88  E-value=8.7e-21  Score=183.32  Aligned_cols=265  Identities=32%  Similarity=0.428  Sum_probs=195.2

Q ss_pred             eEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH----hHHHHHHHHHHHHHhhcCCCCCcc-eeeeecccccccCC
Q 013220           38 YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ----FAQAALHEIEVLSAVADGDPSNEK-CVIRLIDHFKHAGP  112 (447)
Q Consensus        38 y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~----~~~~~~~E~~~l~~l~~~~~~~~~-~Iv~~~~~~~~~~~  112 (447)
                      |.+.+.||.|+|+.||++.+.   ..+++|.+.....    ....+.+|+.+++.+.      |+ +|+++++.+...  
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~---~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~------~~~~i~~~~~~~~~~--   70 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR---KLVALKVLAKKLESKSKEVERFLREIQILASLN------HPPNIVKLYDFFQDE--   70 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec---cEEEEEeechhhccchhHHHHHHHHHHHHHHcc------CCcceeeEEEEEecC--
Confidence            788999999999999999887   7889998766543    3567888999999984      44 799999998532  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRY-KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~-~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                        ...+++++++ ++.+.+++..... ..+.......++.|++.+++++|+. +++|||+||+||++..           
T Consensus        71 --~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~-~~~hrd~kp~nil~~~-----------  136 (384)
T COG0515          71 --GSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSK-GIIHRDIKPENILLDR-----------  136 (384)
T ss_pred             --CEEEEEEecCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCHHHeeecC-----------
Confidence              4589999999 7788866554321 1588999999999999999999996 9999999999999933           


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCccc-ceeEeecCccccccc-
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDM-RCKVVDFGNACRANK-  268 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~kL~Dfg~a~~~~~-  268 (447)
                                                                                   .. .++++|||.+..... 
T Consensus       137 -------------------------------------------------------------~~~~~~l~dfg~~~~~~~~  155 (384)
T COG0515         137 -------------------------------------------------------------DGRVVKLIDFGLAKLLPDP  155 (384)
T ss_pred             -------------------------------------------------------------CCCeEEEeccCcceecCCC
Confidence                                                                         33 689999999864332 


Q ss_pred             --------ccccCCCCCCccChHHhhc---CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCC
Q 013220          269 --------QFAEEIQTRQYRAPEVILR---AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK  337 (447)
Q Consensus       269 --------~~~~~~gt~~y~aPE~l~~---~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~  337 (447)
                              .....+|+..|+|||.+.+   ..+....|+||+|+++++++.|..||......   ...............
T Consensus       156 ~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~~~~~  232 (384)
T COG0515         156 GSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNS---SATSQTLKIILELPT  232 (384)
T ss_pred             CccccccccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCcc---ccHHHHHHHHHhcCC
Confidence                    2345688999999999987   56789999999999999999999997655311   001111111111111


Q ss_pred             C--CHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          338 M--PRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       338 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      .  ....                                ...  ........+.+++.+++..+|..|.+..+...++|.
T Consensus       233 ~~~~~~~--------------------------------~~~--~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  278 (384)
T COG0515         233 PSLASPL--------------------------------SPS--NPELISKAASDLLKKLLAKDPKNRLSSSSDLSHDLL  278 (384)
T ss_pred             ccccccc--------------------------------Ccc--ccchhhHHHHHHHHHHHhcCchhcCCHHHHhhchHh
Confidence            0  0000                                000  001223578899999999999999999999999877


Q ss_pred             ccccCCcccc
Q 013220          416 SLRNSTRDET  425 (447)
Q Consensus       416 ~~~~~~~~~~  425 (447)
                      ..........
T Consensus       279 ~~~~~~~~~~  288 (384)
T COG0515         279 AHLKLKESDL  288 (384)
T ss_pred             hCcccccccc
Confidence            7655444433

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.86  E-value=4.5e-21  Score=191.67  Aligned_cols=119  Identities=26%  Similarity=0.285  Sum_probs=93.4

Q ss_pred             CCceEEEEeecccCceEEEEEEeCC-CCeEEEEEEechh------HHhHHHHHHHHHHHHHhhcCCCCCcceeee-eccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTR-TSSYVALKIQKSA------AQFAQAALHEIEVLSAVADGDPSNEKCVIR-LIDH  106 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~-~~~~vaiK~~~~~------~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~-~~~~  106 (447)
                      .++|.+.+.||+|+||+||+|++.. ++..||||.....      ......+.+|+++|+.+      .|++|+. ++..
T Consensus        17 ~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L------~h~~iv~~l~~~   90 (365)
T PRK09188         17 SARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTV------RGIGVVPQLLAT   90 (365)
T ss_pred             cCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhc------cCCCCCcEEEEc
Confidence            3789999999999999999998876 6788899975422      22355789999999999      6667764 4331


Q ss_pred             ccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccC-CCCCeEe
Q 013220          107 FKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDL-KPENILL  177 (447)
Q Consensus       107 ~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Di-kp~Nill  177 (447)
                              ...|+||||+ |++|.. ..  .   ..   ...++.|++.||+|||+. ||+|||| ||+|||+
T Consensus        91 --------~~~~LVmE~~~G~~L~~-~~--~---~~---~~~~~~~i~~aL~~lH~~-gIiHrDL~KP~NILv  145 (365)
T PRK09188         91 --------GKDGLVRGWTEGVPLHL-AR--P---HG---DPAWFRSAHRALRDLHRA-GITHNDLAKPQNWLM  145 (365)
T ss_pred             --------CCcEEEEEccCCCCHHH-hC--c---cc---hHHHHHHHHHHHHHHHHC-CCeeCCCCCcceEEE
Confidence                    2479999999 777752 21  1   11   146789999999999996 9999999 9999999

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.82  E-value=2e-19  Score=172.99  Aligned_cols=208  Identities=24%  Similarity=0.335  Sum_probs=129.7

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhc-CCCC---Ccc------eeee
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVAD-GDPS---NEK------CVIR  102 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~-~~~~---~~~------~Iv~  102 (447)
                      .+...+.||.|+++.||.+++..+++.+|+|+.....    ...+.+.+|.-....+.+ .+..   .|-      .+++
T Consensus        13 ~l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~   92 (288)
T PF14531_consen   13 TLVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLR   92 (288)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEE
T ss_pred             EEEEccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEE
Confidence            3567778999999999999999999999999754332    223344444433333211 0000   011      1222


Q ss_pred             ecc--cccccCCCcc-----eEEEEEecccccHHHHHHhhc---cCC--CCHHHHHHHHHHHHHHHHHHHhhCCcccccC
Q 013220          103 LID--HFKHAGPNGQ-----HLCMVLEFLGDSLLRLIKYSR---YKG--LELNKVREICKYILTGLDYLHRELGIIHTDL  170 (447)
Q Consensus       103 ~~~--~~~~~~~~~~-----~~~lvmE~~~~~L~~~~~~~~---~~~--l~~~~~~~i~~qil~aL~~lH~~~gIiH~Di  170 (447)
                      +-+  .+....+...     ..+++|+-+.++|..++..-.   ...  ........+..|++..+++||.. |++|+||
T Consensus        93 i~~~~~~~~~~~~~~~~~v~n~~~l~P~~~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~-GlVHgdi  171 (288)
T PF14531_consen   93 IPGKPPFFERGPGQSIYWVLNRFLLMPRAQGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSY-GLVHGDI  171 (288)
T ss_dssp             ETTS-SEEEECETTEEEEEESEEEEEE--SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT-TEEEST-
T ss_pred             EcCCCcceecCCCCccceeehhhhccchhhhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhc-ceEeccc
Confidence            221  1111111111     247888988888887764311   110  11222344558999999999996 9999999


Q ss_pred             CCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCC
Q 013220          171 KPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDG  250 (447)
Q Consensus       171 kp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (447)
                      +|+|+++                                                                        +
T Consensus       172 ~~~nfll------------------------------------------------------------------------~  179 (288)
T PF14531_consen  172 KPENFLL------------------------------------------------------------------------D  179 (288)
T ss_dssp             SGGGEEE-------------------------------------------------------------------------
T ss_pred             ceeeEEE------------------------------------------------------------------------c
Confidence            9999999                                                                        5


Q ss_pred             cccceeEeecCcccccccccccCCCCCCccChHHhhcC--------CCCccchhHhHHHHHHHHhhCCCCCCCCC
Q 013220          251 IDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRA--------GYSFSVDMWSFACTAFELATGDMLFAPKS  317 (447)
Q Consensus       251 ~~~~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~l~~~--------~~~~~~DiwSlGvil~~l~~g~~Pf~~~~  317 (447)
                      .++.+.|+||+.....+........+..|.+||.....        .++.+.|.|+||+++|.|..+..||....
T Consensus       180 ~~G~v~Lg~F~~~~r~g~~~~~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~~~~  254 (288)
T PF14531_consen  180 QDGGVFLGDFSSLVRAGTRYRCSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLPFGLSS  254 (288)
T ss_dssp             TTS-EEE--GGGEEETTEEEEGGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-STCCCG
T ss_pred             CCCCEEEcChHHHeecCceeeccCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHccCCCCCCC
Confidence            57899999998887665544334456789999987542        47899999999999999999999997653

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=4.4e-20  Score=200.21  Aligned_cols=201  Identities=22%  Similarity=0.346  Sum_probs=158.0

Q ss_pred             ccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           33 FNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        33 ~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|..|.+.++||.|+||+||+|.+.+ ++.||+|+.+...-  -+|+--.+++.+|.   +.-.+.|+.+..++...  
T Consensus       695 ~~~~~~~I~~e~G~g~y~~vy~a~~~~-~~~~alK~e~P~~~--WEfYI~~q~~~RLk---~~~~~~~~~~~~a~~~~--  766 (974)
T KOG1166|consen  695 VGGEKFCISKEIGEGSYGSVYVATHSN-GKLVALKVEKPPNP--WEFYICLQVMERLK---PQMLPSIMHISSAHVFQ--  766 (974)
T ss_pred             ecceeEEEEeeeccccceEEEEeecCC-CcEEEEEeecCCCc--eeeeehHHHHHhhc---hhhhcchHHHHHHHccC--
Confidence            346789999999999999999999877 99999998765432  23333445555554   11234566666666543  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                        +-.++|+||. -|+|.+++...  +.+++..+..+..||+.-++.||.. +||||||||+|+|+......+       
T Consensus       767 --~~S~lv~ey~~~Gtlld~~N~~--~~m~e~lv~~~~~qml~ive~lH~~-~IIHgDiKPDNfll~~~~~~~-------  834 (974)
T KOG1166|consen  767 --NASVLVSEYSPYGTLLDLINTN--KVMDEYLVMFFSCQMLRIVEHLHAM-GIIHGDIKPDNFLLRREICAD-------  834 (974)
T ss_pred             --CcceeeeeccccccHHHhhccC--CCCCchhhhHHHHHHHHHHHHHHhc-ceecccCCcceeEeecccCCC-------
Confidence              5689999999 89999999844  5599999999999999999999995 999999999999995532111       


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc----
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN----  267 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~----  267 (447)
                                                                                .....++|+|||.+.-+.    
T Consensus       835 ----------------------------------------------------------~~~~~l~lIDfG~siDm~lfp~  856 (974)
T KOG1166|consen  835 ----------------------------------------------------------SDSKGLYLIDFGRSIDMKLFPD  856 (974)
T ss_pred             ----------------------------------------------------------CcccceEEEecccceeeeEcCC
Confidence                                                                      114568999999996432    


Q ss_pred             -cccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCC
Q 013220          268 -KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDM  311 (447)
Q Consensus       268 -~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~  311 (447)
                       ..+...++|-.|-.+|+..|.+++..+|.|.|+.+++.|++|++
T Consensus       857 ~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y  901 (974)
T KOG1166|consen  857 GTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKY  901 (974)
T ss_pred             CcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHH
Confidence             23444578999999999999999999999999999999999964

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.82  E-value=9.7e-21  Score=202.12  Aligned_cols=244  Identities=21%  Similarity=0.257  Sum_probs=175.2

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      .|...+-||++.|=.|.+|++..  ..|+||++-...  ...+.+.++++-++..    +..+||++++.-...    +.
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~e--G~vVvKVFvk~~p~~sL~~~~qrL~~ik~~----l~~~pn~lPfqk~~~----t~   93 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDRE--GLVVVKVFVKQDPTISLRPFKQRLEEIKFA----LMKAPNCLPFQKVLV----TD   93 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCC--ceEEEEEEeccCCCCCchHHHHHHHHHHHH----hhcCCcccchHHHHH----hh
Confidence            68899999999999999997753  348999765443  3456666666655532    128899998887755    34


Q ss_pred             ceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          115 QHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       115 ~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      ...|||-+|+-..|++-+.....  +..-+.++|+.|++.||.-+|.. ||+|||||.+|||++.               
T Consensus        94 kAAylvRqyvkhnLyDRlSTRPF--L~~iEKkWiaFQLL~al~qcH~~-gVcHGDIKsENILiTS---------------  155 (1431)
T KOG1240|consen   94 KAAYLVRQYVKHNLYDRLSTRPF--LVLIEKKWIAFQLLKALSQCHKL-GVCHGDIKSENILITS---------------  155 (1431)
T ss_pred             HHHHHHHHHHhhhhhhhhccchH--HHHHHHHHHHHHHHHHHHHHHHc-CccccccccceEEEee---------------
Confidence            68899999999999998876544  67788899999999999999996 9999999999999944               


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccc----ccc-
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA----NKQ-  269 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~----~~~-  269 (447)
                                                                               ..-+.|+||..-++.    +.+ 
T Consensus       156 ---------------------------------------------------------WNW~~LtDFAsFKPtYLPeDNPa  178 (1431)
T KOG1240|consen  156 ---------------------------------------------------------WNWLYLTDFASFKPTYLPEDNPA  178 (1431)
T ss_pred             ---------------------------------------------------------echhhhhcccccCCccCCCCCcc
Confidence                                                                     344778888755432    111 


Q ss_pred             -cccCCCC----CCccChHHhhcC----------C-CCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHH
Q 013220          270 -FAEEIQT----RQYRAPEVILRA----------G-YSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMM  332 (447)
Q Consensus       270 -~~~~~gt----~~y~aPE~l~~~----------~-~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~  332 (447)
                       .+.+..|    ..|.|||.+...          + .+++.||||+||+++||++ |+.||.-             .++.
T Consensus       179 df~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~L-------------SQL~  245 (1431)
T KOG1240|consen  179 DFTFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTL-------------SQLL  245 (1431)
T ss_pred             cceEEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccH-------------HHHH
Confidence             1111222    469999998531          2 5789999999999999987 6777732             1222


Q ss_pred             HHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          333 ELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       333 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                      +                            ++.......+..+.+-.      ...++.||..|++.||.+|.+|++.|+-
T Consensus       246 a----------------------------Yr~~~~~~~e~~Le~Ie------d~~~Rnlil~Mi~rdPs~RlSAedyL~~  291 (1431)
T KOG1240|consen  246 A----------------------------YRSGNADDPEQLLEKIE------DVSLRNLILSMIQRDPSKRLSAEDYLQK  291 (1431)
T ss_pred             h----------------------------HhccCccCHHHHHHhCc------CccHHHHHHHHHccCchhccCHHHHHHh
Confidence            1                            11111111222222211      2368899999999999999999999976

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.81  E-value=3.9e-21  Score=196.22  Aligned_cols=239  Identities=28%  Similarity=0.394  Sum_probs=191.5

Q ss_pred             ecccCceEEEEEEeC---CCCeEEEEEEechhHH---hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceE
Q 013220           44 LGWGQFSIVWLAYDT---RTSSYVALKIQKSAAQ---FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHL  117 (447)
Q Consensus        44 lG~G~~g~Vy~a~~~---~~~~~vaiK~~~~~~~---~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~  117 (447)
                      +|.|+||.|++++..   ..+..+|.|++++...   .......|-.++...+     +|+.++++.-+|...    ..+
T Consensus         2 lg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~-----~~~f~v~lhyafqt~----~kl   72 (612)
T KOG0603|consen    2 LGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVH-----NTPFLVKLHYAFQTD----GKL   72 (612)
T ss_pred             CCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhcc-----CCCceeeeeeeeccc----cch
Confidence            689999999998533   3477889998765431   1124555777777775     689999999888854    679


Q ss_pred             EEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCc
Q 013220          118 CMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL  196 (447)
Q Consensus       118 ~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~  196 (447)
                      +++++|. +++++.......  .+.+.....+...++.|++++|+- +|+|||+|++||++                   
T Consensus        73 ~l~ld~~rgg~lft~l~~~~--~f~~~~~~~~~aelaLald~lh~l-~iiyrd~k~enill-------------------  130 (612)
T KOG0603|consen   73 YLILDFLRGGDLFTRLSKEV--MFDELDVAFYLAELALALDHLHKL-GIAYRDYKLENVLL-------------------  130 (612)
T ss_pred             hHhhhhcccchhhhccccCC--chHHHHHHHHHHHHHHHHhhcchh-HHHHhcccccceee-------------------
Confidence            9999999 778876665433  377778888889999999999995 99999999999999                   


Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccccCCCC
Q 013220          197 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQT  276 (447)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~gt  276 (447)
                                                                           +..+.+++.|||.++........ |||
T Consensus       131 -----------------------------------------------------d~~Ghi~~tdfglske~v~~~~~-cgt  156 (612)
T KOG0603|consen  131 -----------------------------------------------------LLEGHIKLTDFGLSKEAVKEKIA-CGT  156 (612)
T ss_pred             -----------------------------------------------------cccCccccCCchhhhHhHhhhhc-ccc
Confidence                                                                 55788999999999765444333 999


Q ss_pred             CCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhccc
Q 013220          277 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH  356 (447)
Q Consensus       277 ~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  356 (447)
                      ..|||||++.  ....++|.||+|+++++|++|..||...          .                             
T Consensus       157 ~eymApEI~~--gh~~a~D~ws~gvl~felltg~~pf~~~----------~-----------------------------  195 (612)
T KOG0603|consen  157 YEYRAPEIIN--GHLSAADWWSFGVLAFELLTGTLPFGGD----------T-----------------------------  195 (612)
T ss_pred             hhhhhhHhhh--ccCCcccchhhhhhHHHHhhCCCCCchH----------H-----------------------------
Confidence            9999999998  5678999999999999999999999641          1                             


Q ss_pred             chhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCC-----hHHHhcCcccccccCC
Q 013220          357 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLRNST  421 (447)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpt-----a~elL~hp~f~~~~~~  421 (447)
                                   ...|+.....+|+..+..+.+++..++..+|..|.-     +.++++|+||..+.-.
T Consensus       196 -------------~~~Il~~~~~~p~~l~~~a~~~~~~l~~r~p~nrLg~~~~~~~eik~h~f~~~i~~~  252 (612)
T KOG0603|consen  196 -------------MKRILKAELEMPRELSAEARSLFRQLFKRNPENRLGAGPDGVDEIKQHEFFQSIDWN  252 (612)
T ss_pred             -------------HHHHhhhccCCchhhhHHHHHHHHHHHhhCHHHHhccCcchhHHHhccchheeeeHh
Confidence                         233444456678888999999999999999999975     4899999999987644

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.81  E-value=8.3e-20  Score=170.67  Aligned_cols=131  Identities=16%  Similarity=0.180  Sum_probs=96.9

Q ss_pred             ccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH----hHH------HHHHHHHHHHHhhcCCCCCc
Q 013220           28 RVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ----FAQ------AALHEIEVLSAVADGDPSNE   97 (447)
Q Consensus        28 ~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~----~~~------~~~~E~~~l~~l~~~~~~~~   97 (447)
                      ..-+.+. ++|++.+.||.|+||.||++.+  ++..+|+|++.....    ...      .+.+|++.+.++      .|
T Consensus        24 ~~~~~l~-~~y~~~~~l~~~~f~~v~l~~~--~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL------~~   94 (232)
T PRK10359         24 IFDDFLS-YNIKTIKVFRNIDDTKVSLIDT--DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRV------RS   94 (232)
T ss_pred             HHHHHhh-CceEEEEEecCCCceEEEEEec--CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHH------HH
Confidence            3344554 8999999999999999999755  466899999864321    111      157888899999      56


Q ss_pred             ceeeeecccccccCCC----cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCC
Q 013220           98 KCVIRLIDHFKHAGPN----GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKP  172 (447)
Q Consensus        98 ~~Iv~~~~~~~~~~~~----~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp  172 (447)
                      ++|....+++......    ....+++|||+ |.+|.+...      +++    ....+++.+|..+|+. |++|||+||
T Consensus        95 ~GI~~~~d~~~~~~~~~~~~~~~~~lvmEyi~G~tL~~~~~------~~~----~~~~~i~~~l~~lH~~-gi~H~Dikp  163 (232)
T PRK10359         95 EGLASLNDFYLLAERKTLRYAHTYIMLIEYIEGVELNDMPE------ISE----DVKAKIKASIESLHQH-GMVSGDPHK  163 (232)
T ss_pred             CCCCcceEeeeecccccccccCCeEEEEEEECCccHHHhhh------ccH----HHHHHHHHHHHHHHHc-CCccCCCCh
Confidence            6777777765543111    23589999999 667866521      332    3456899999999996 999999999


Q ss_pred             CCeEee
Q 013220          173 ENILLV  178 (447)
Q Consensus       173 ~Nill~  178 (447)
                      .||++.
T Consensus       164 ~Nili~  169 (232)
T PRK10359        164 GNFIVS  169 (232)
T ss_pred             HHEEEe
Confidence            999993

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.80  E-value=4.4e-20  Score=170.84  Aligned_cols=243  Identities=16%  Similarity=0.249  Sum_probs=181.4

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++..++-+|.+...|..|+|++.  |..+++|+++.+.   +..+.|+.|.-.|+.+      .||||+.+++++...  
T Consensus       190 ~~lnl~tkl~e~hsgelwrgrwq--gndivakil~vr~~t~risrdfneefp~lrif------shpnilpvlgacnsp--  259 (448)
T KOG0195|consen  190 SSLNLITKLAESHSGELWRGRWQ--GNDIVAKILNVREVTARISRDFNEEFPALRIF------SHPNILPVLGACNSP--  259 (448)
T ss_pred             hhhhhhhhhccCCCccccccccc--CcchhhhhhhhhhcchhhcchhhhhCcceeee------cCCchhhhhhhccCC--
Confidence            34567788999999999999885  4456678776554   4566899999999988      899999999998865  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccc-cCCCCCeEeeecCCCCCCcccC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHT-DLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~-Dikp~Nill~~~~~~~~~~~~~  190 (447)
                        ..+.++..|| -++|++++.....-..+..++..++..++.|++|||+--.++-| -++...+++...          
T Consensus       260 --pnlv~isq~mp~gslynvlhe~t~vvvd~sqav~faldiargmaflhslep~ipr~~lns~hvmided----------  327 (448)
T KOG0195|consen  260 --PNLVIISQYMPFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSLEPMIPRFYLNSKHVMIDED----------  327 (448)
T ss_pred             --CCceEeeeeccchHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhcchhhhhhhcccceEEecch----------
Confidence              6799999999 88999998655444467788999999999999999983244443 677888888442          


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF  270 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~  270 (447)
                                                                                  -..++..+|--++...    
T Consensus       328 ------------------------------------------------------------ltarismad~kfsfqe----  343 (448)
T KOG0195|consen  328 ------------------------------------------------------------LTARISMADTKFSFQE----  343 (448)
T ss_pred             ------------------------------------------------------------hhhheecccceeeeec----
Confidence                                                                        1223334444443221    


Q ss_pred             ccCCCCCCccChHHhhcCCCC---ccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          271 AEEIQTRQYRAPEVILRAGYS---FSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~~~---~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                      ....-.+.|++||.+.+++-+   .++|+|||++++++|.+...||.+.+.-       ...+...+-|.          
T Consensus       344 ~gr~y~pawmspealqrkped~n~raadmwsfaillwel~trevpfadlspm-------ecgmkialegl----------  406 (448)
T KOG0195|consen  344 VGRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLSPM-------ECGMKIALEGL----------  406 (448)
T ss_pred             cccccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCCch-------hhhhhhhhccc----------
Confidence            223347899999999987643   6899999999999999999999876421       11111222111          


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHh
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCL  410 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL  410 (447)
                                                   +..+|+.++..+..|+.-|+..||.+||.++.++
T Consensus       407 -----------------------------rv~ippgis~hm~klm~icmnedpgkrpkfdmiv  440 (448)
T KOG0195|consen  407 -----------------------------RVHIPPGISRHMNKLMNICMNEDPGKRPKFDMIV  440 (448)
T ss_pred             -----------------------------cccCCCCccHHHHHHHHHHhcCCCCcCCCcceeh
Confidence                                         3347888899999999999999999999988764

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.79  E-value=2.8e-19  Score=164.07  Aligned_cols=121  Identities=21%  Similarity=0.185  Sum_probs=88.7

Q ss_pred             EEeecccCceEEEEEEeCCCCeEEEEEEechhHHh---------------------------HHHHHHHHHHHHHhhcCC
Q 013220           41 QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQF---------------------------AQAALHEIEVLSAVADGD   93 (447)
Q Consensus        41 ~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~---------------------------~~~~~~E~~~l~~l~~~~   93 (447)
                      .+.||+|++|.||+|.+. +|+.||+|+++.....                           ......|++++..+.+..
T Consensus         2 ~~~ig~G~~~~Vy~a~~~-~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~   80 (190)
T cd05147           2 NGCISTGKEANVYHATTA-NGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAG   80 (190)
T ss_pred             CCccccccceEEEEEECC-CCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            467999999999999986 8999999998654210                           012234999999996543


Q ss_pred             CCCcceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH-HhhCCcccccCC
Q 013220           94 PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYL-HRELGIIHTDLK  171 (447)
Q Consensus        94 ~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~l-H~~~gIiH~Dik  171 (447)
                      . .+|.++.     .      ...+|||||+ |+++......  ...++...+..++.|++.+|+++ |+. ||+|||||
T Consensus        81 v-~~p~~~~-----~------~~~~iVmE~i~g~~l~~~~~~--~~~~~~~~~~~i~~qi~~~L~~l~H~~-giiHrDlk  145 (190)
T cd05147          81 I-PCPEPIL-----L------KSHVLVMEFIGDDGWAAPRLK--DAPLSESKARELYLQVIQIMRILYQDC-RLVHADLS  145 (190)
T ss_pred             C-CCCcEEE-----e------cCCEEEEEEeCCCCCcchhhh--cCCCCHHHHHHHHHHHHHHHHHHHHhC-CcccCCCC
Confidence            2 2233321     1      1237999999 4444433222  24588999999999999999999 685 99999999


Q ss_pred             CCCeEe
Q 013220          172 PENILL  177 (447)
Q Consensus       172 p~Nill  177 (447)
                      |+||++
T Consensus       146 P~NIli  151 (190)
T cd05147         146 EYNLLY  151 (190)
T ss_pred             HHHEEE
Confidence            999999

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.77  E-value=2.5e-18  Score=157.76  Aligned_cols=121  Identities=21%  Similarity=0.211  Sum_probs=88.0

Q ss_pred             EEeecccCceEEEEEEeCCCCeEEEEEEechhHH---------------------------hHHHHHHHHHHHHHhhcCC
Q 013220           41 QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ---------------------------FAQAALHEIEVLSAVADGD   93 (447)
Q Consensus        41 ~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~---------------------------~~~~~~~E~~~l~~l~~~~   93 (447)
                      .+.||+|++|.||+|++. +|+.||||++.....                           ......+|.+.+..+.+. 
T Consensus         2 ~~~ig~G~~~~Vy~a~~~-~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~-   79 (190)
T cd05145           2 NGCISTGKEANVYHARTG-DGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEA-   79 (190)
T ss_pred             CceeecCCCcEEEEEEcC-CCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhC-
Confidence            468999999999999987 899999998765321                           012345788999998543 


Q ss_pred             CCCcceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh-hCCcccccCC
Q 013220           94 PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR-ELGIIHTDLK  171 (447)
Q Consensus        94 ~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~-~~gIiH~Dik  171 (447)
                           +|.....+..      ...++||||+ |+++.......  ..++...+..++.|++.++.++|+ . ||+|||||
T Consensus        80 -----~i~~p~~~~~------~~~~lVmE~~~g~~~~~~~l~~--~~~~~~~~~~i~~~l~~~l~~lH~~~-givHrDlk  145 (190)
T cd05145          80 -----GVPVPEPILL------KKNVLVMEFIGDDGSPAPRLKD--VPLEEEEAEELYEQVVEQMRRLYQEA-GLVHGDLS  145 (190)
T ss_pred             -----CCCCceEEEe------cCCEEEEEEecCCCchhhhhhh--ccCCHHHHHHHHHHHHHHHHHHHHhC-CEecCCCC
Confidence                 3321111111      1248999999 44343322221  347788999999999999999999 7 99999999


Q ss_pred             CCCeEe
Q 013220          172 PENILL  177 (447)
Q Consensus       172 p~Nill  177 (447)
                      |+||++
T Consensus       146 P~NIll  151 (190)
T cd05145         146 EYNILY  151 (190)
T ss_pred             hhhEEE
Confidence            999999

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.76  E-value=8.6e-19  Score=187.24  Aligned_cols=221  Identities=29%  Similarity=0.424  Sum_probs=154.8

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      ..|..++.|-.|+||-||+.+|+.+.+.||+|+-+.+-.     .+.  ++...      +.+.+|              
T Consensus        83 ~df~~IklisngAygavylvrh~~trqrfa~kiNkq~li-----lRn--ilt~a------~npfvv--------------  135 (1205)
T KOG0606|consen   83 SDFNTIKLISNGAYGAVYLVRHKETRQRFAMKINKQNLI-----LRN--ILTFA------GNPFVV--------------  135 (1205)
T ss_pred             cccceeEeeccCCCCceeeeeccccccchhhcccccchh-----hhc--ccccc------CCccee--------------
Confidence            568999999999999999999999999999975543321     000  22222      222222              


Q ss_pred             eEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCC
Q 013220          116 HLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI  195 (447)
Q Consensus       116 ~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~  195 (447)
                               |++ ...++.-  ..++.        +++.|++|+|+. ||+|||+||+|.+|+.                
T Consensus       136 ---------gDc-~tllk~~--g~lPv--------dmvla~Eylh~y-givhrdlkpdnllIT~----------------  178 (1205)
T KOG0606|consen  136 ---------GDC-ATLLKNI--GPLPV--------DMVLAVEYLHSY-GIVHRDLKPDNLLITS----------------  178 (1205)
T ss_pred             ---------chh-hhhcccC--CCCcc--------hhhHHhHhhccC-CeecCCCCCCcceeee----------------
Confidence                     111 1111110  11221        226789999995 9999999999999954                


Q ss_pred             cCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc--------
Q 013220          196 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--------  267 (447)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~--------  267 (447)
                                                                              -+.+|+.|||+++...        
T Consensus       179 --------------------------------------------------------mGhiKlTDfgLsk~GLms~atnl~  202 (1205)
T KOG0606|consen  179 --------------------------------------------------------MGHIKLTDFGLSKKGLMSLATNLK  202 (1205)
T ss_pred             --------------------------------------------------------cccccccchhhhhhhhhhccchhh
Confidence                                                                    5779999999985321        


Q ss_pred             ----------cccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCC
Q 013220          268 ----------KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK  337 (447)
Q Consensus       268 ----------~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~  337 (447)
                                -.....+||+.|+|||++....|+..+|.|++|+|+|+.+-|++||.+..      .+......+.....
T Consensus       203 eg~I~k~t~Ef~dKqvcgTPeyiaPeVilrqgygkpvdwwamGiIlyeFLVgcvpffGdt------peelfg~visd~i~  276 (1205)
T KOG0606|consen  203 EGHIEKDTHEFQDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDT------PEELFGQVISDDIE  276 (1205)
T ss_pred             hcchHHHHHHhhhccccCCccccChhhhhhhccCCCccHHHHHHHHHHHheeeeeccCCC------HHHHHhhhhhhhcc
Confidence                      01233489999999999999999999999999999999999999998773      22222222222112


Q ss_pred             CCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC---ChHHHhcCcc
Q 013220          338 MPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP---TAQQCLQHPW  414 (447)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp---ta~elL~hp~  414 (447)
                      .|+.                                       ....+.++.++|.++|+.+|..|.   .+-++-+|+|
T Consensus       277 wpE~---------------------------------------dea~p~Ea~dli~~LL~qnp~~Rlgt~ga~evk~h~f  317 (1205)
T KOG0606|consen  277 WPEE---------------------------------------DEALPPEAQDLIEQLLRQNPLCRLGTGGALEVKQHGF  317 (1205)
T ss_pred             cccc---------------------------------------CcCCCHHHHHHHHHHHHhChHhhcccchhhhhhhccc
Confidence            1110                                       123467899999999999999996   4667779999


Q ss_pred             cccccCC
Q 013220          415 LSLRNST  421 (447)
Q Consensus       415 f~~~~~~  421 (447)
                      |+.-.-+
T Consensus       318 f~~LDw~  324 (1205)
T KOG0606|consen  318 FQLLDWK  324 (1205)
T ss_pred             eeecccc
Confidence            9976655

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.76  E-value=8.7e-18  Score=162.92  Aligned_cols=195  Identities=19%  Similarity=0.213  Sum_probs=144.6

Q ss_pred             CCCcceeeeecccccccCC-----------------------CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHH
Q 013220           94 PSNEKCVIRLIDHFKHAGP-----------------------NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICK  150 (447)
Q Consensus        94 ~~~~~~Iv~~~~~~~~~~~-----------------------~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~  150 (447)
                      +..|||||++..+|.+.-+                       .+..+|+||..+..+|..++...   ..+-...+-++.
T Consensus       272 La~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~tLr~yl~~~---~~s~r~~~~~la  348 (598)
T KOG4158|consen  272 LAKHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQTLREYLWTR---HRSYRTGRVILA  348 (598)
T ss_pred             cCCCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchhhHHHHHhcC---CCchHHHHHHHH
Confidence            4689999999999887432                       23579999999999998887543   366677888999


Q ss_pred             HHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhh
Q 013220          151 YILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANIS  230 (447)
Q Consensus       151 qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (447)
                      |+++|+.|||.+ ||.|||+|.+|||+...+                                                 
T Consensus       349 QlLEav~hL~~h-gvAhRDlKSDNiL~Eldd-------------------------------------------------  378 (598)
T KOG4158|consen  349 QLLEAVTHLHKH-GVAHRDLKSDNILLELDD-------------------------------------------------  378 (598)
T ss_pred             HHHHHHHHHHHc-cchhhcccccceEEEecC-------------------------------------------------
Confidence            999999999997 999999999999995431                                                 


Q ss_pred             hhhcccCCCCCCCCCccCCCcccceeEeecCcccccc---------cccccCCCCCCccChHHhhcCC-----C-Cccch
Q 013220          231 IRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---------KQFAEEIQTRQYRAPEVILRAG-----Y-SFSVD  295 (447)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~---------~~~~~~~gt~~y~aPE~l~~~~-----~-~~~~D  295 (447)
                                         +.-..+.++|||.+.-.+         ......-|.-..+|||+...-+     . -.++|
T Consensus       379 -------------------D~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~ta~PGp~avvny~kAD  439 (598)
T KOG4158|consen  379 -------------------DEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIATAVPGPNAVVNYEKAD  439 (598)
T ss_pred             -------------------CCCcEEEEcccceeeeccccccccccccccccCCCcceecchhhhhcCCCCceeeccchhh
Confidence                               333457889999884322         1122234677889999986432     1 25899


Q ss_pred             hHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhh
Q 013220          296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLV  375 (447)
Q Consensus       296 iwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (447)
                      .|+.|.+.|+++....||+..-+                   +--                            ....+..
T Consensus       440 ~WA~GalaYEIfg~~NPFY~rGe-------------------m~L----------------------------~~r~Yqe  472 (598)
T KOG4158|consen  440 TWAAGALAYEIFGRSNPFYKRGE-------------------MLL----------------------------DTRTYQE  472 (598)
T ss_pred             hhhhhhhHHHHhccCCcccccch-------------------hee----------------------------chhhhhh
Confidence            99999999999999999986310                   000                            0001111


Q ss_pred             h-hcCCChhhHHHHHHHHhhccccCCCCCCChH
Q 013220          376 D-KYRFSETDAREFAEFLVPLLDFTPEKRPTAQ  407 (447)
Q Consensus       376 ~-~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~  407 (447)
                      . -+.+++.++..+++++..+|+.||.||+++.
T Consensus       473 ~qLPalp~~vpp~~rqlV~~lL~r~pskRvsp~  505 (598)
T KOG4158|consen  473 SQLPALPSRVPPVARQLVFDLLKRDPSKRVSPN  505 (598)
T ss_pred             hhCCCCcccCChHHHHHHHHHhcCCccccCCcc
Confidence            1 1236677888999999999999999999853

>PRK10345 hypothetical protein; Provisional

Probab=99.73  E-value=3.8e-17  Score=151.84  Aligned_cols=129  Identities=18%  Similarity=0.204  Sum_probs=99.7

Q ss_pred             EEeecccCceEEEEEEeCCCCeEEEEEEechh-HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEE
Q 013220           41 QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA-AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCM  119 (447)
Q Consensus        41 ~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~l  119 (447)
                      .+.||+|+||.||.  +..++.. +||+.... ....+.+.+|+++++.+.+.. ..|+||+++++++......+..+.+
T Consensus         7 ~~~LG~G~~~~Vy~--hp~~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~-~~h~nIvr~yg~~et~~g~g~v~~~   82 (210)
T PRK10345          7 QSPLGTGRHRKCYA--HPEDAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRL-IDWSGIPRYYGTVETDCGTGYVYDV   82 (210)
T ss_pred             cceecCCCceEEEE--CCCCcCe-EEEEEeccccchHHHHHHHHHHHHHhhccC-CCCcccceeeEEEEeCCCCeEEEEE
Confidence            45799999999996  6666555 69976643 223467899999999997643 4799999999999875433444568


Q ss_pred             EEecc---cccHHHHHHhhccCCCCHHHHHHHHHHHHHHH-HHHHhhCCcccccCCCCCeEeee
Q 013220          120 VLEFL---GDSLLRLIKYSRYKGLELNKVREICKYILTGL-DYLHRELGIIHTDLKPENILLVS  179 (447)
Q Consensus       120 vmE~~---~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL-~~lH~~~gIiH~Dikp~Nill~~  179 (447)
                      ||||+   +++|.+++...   .+++.  ..++.|++.++ +|||++ +|+||||||+|||+..
T Consensus        83 I~e~~G~~~~tL~~~l~~~---~~~e~--~~~~~~~L~~l~~yLh~~-~IvhrDlKp~NILl~~  140 (210)
T PRK10345         83 IADFDGKPSITLTEFAEQC---RYEED--VAQLRQLLKKLKRYLLDN-RIVTMELKPQNILCQR  140 (210)
T ss_pred             EecCCCCcchhHHHHHHcc---cccHh--HHHHHHHHHHHHHHHHHC-CEeecCCCHHHEEEec
Confidence            99995   47999999643   25554  35678888877 899997 9999999999999954

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.72  E-value=1.1e-16  Score=146.89  Aligned_cols=182  Identities=18%  Similarity=0.136  Sum_probs=131.5

Q ss_pred             EEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHH-----HHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           39 IAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQ-----AALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        39 ~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~-----~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      -+...|+.|+||+||++..  .+..++.+.+.......+     .+.+|+++|+.+.     ++++|.++++.       
T Consensus         5 ~~~~~l~~~~f~~v~~~~~--~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~-----~~~~vP~ll~~-------   70 (218)
T PRK12274          5 AVNEPLKSDTFGRILLVRG--GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLD-----GLPRTPRLLHW-------   70 (218)
T ss_pred             ccceeecCCCcceEEEeec--CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcC-----CCCCCCEEEEE-------
Confidence            3567899999999998854  678888887776655444     5788999999996     34556666553       


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccC-CCCCeEeeecCCCCCCcccCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDL-KPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Di-kp~Nill~~~~~~~~~~~~~~  191 (447)
                       ...+++|||+ |.+|.....        .. ...++.|++.+|+++|+. ||+|||| ||.|||++             
T Consensus        71 -~~~~lvmeyI~G~~L~~~~~--------~~-~~~~~~qi~~~L~~lH~~-GIvHrDL~kp~NILv~-------------  126 (218)
T PRK12274         71 -DGRHLDRSYLAGAAMYQRPP--------RG-DLAYFRAARRLLQQLHRC-GVAHNDLAKEANWLVQ-------------  126 (218)
T ss_pred             -cCEEEEEeeecCccHHhhhh--------hh-hHHHHHHHHHHHHHHHHC-cCccCCCCCcceEEEc-------------
Confidence             2368999999 777754321        11 135788999999999996 9999999 79999993             


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccc
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA  271 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~  271 (447)
                                                                                 .++.++|+|||++........
T Consensus       127 -----------------------------------------------------------~~g~i~LIDFG~A~~~~~~~~  147 (218)
T PRK12274        127 -----------------------------------------------------------EDGSPAVIDFQLAVRGNPRAR  147 (218)
T ss_pred             -----------------------------------------------------------CCCCEEEEECCCceecCCcch
Confidence                                                                       345799999999974332110


Q ss_pred             ----------------cCCCCCCccChHHhhcC-CCC-ccchhHhHHHHHHHHhhCCCCCCCCC
Q 013220          272 ----------------EEIQTRQYRAPEVILRA-GYS-FSVDMWSFACTAFELATGDMLFAPKS  317 (447)
Q Consensus       272 ----------------~~~gt~~y~aPE~l~~~-~~~-~~~DiwSlGvil~~l~~g~~Pf~~~~  317 (447)
                                      ..-.++.+++|+...-. ..+ ...+.++.|+-+|.++|+..|+.+..
T Consensus       148 ~~r~L~~rDl~~llk~~~~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~~~~  211 (218)
T PRK12274        148 WMRLLAREDLRHLLKHKRMYCPAALTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLHWEDN  211 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhhccchhHHHHHHHhcchHHHHHhccCCccccC
Confidence                            00246777777765432 344 44556688999999999999887653

>smart00090 RIO RIO-like kinase

Probab=99.68  E-value=1.3e-16  Score=151.30  Aligned_cols=132  Identities=25%  Similarity=0.248  Sum_probs=95.5

Q ss_pred             ccccCC-ceEEEEeecccCceEEEEEE-eCCCCeEEEEEEechhHH-------------------------hHHHHHHHH
Q 013220           31 DLFNGG-RYIAQRKLGWGQFSIVWLAY-DTRTSSYVALKIQKSAAQ-------------------------FAQAALHEI   83 (447)
Q Consensus        31 ~~~~~~-~y~l~~~lG~G~~g~Vy~a~-~~~~~~~vaiK~~~~~~~-------------------------~~~~~~~E~   83 (447)
                      .++..| -|.+.+.||+|++|.||+|. +..++..||+|+++....                         ....+.+|+
T Consensus        22 ~~~~~~~~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~  101 (237)
T smart00090       22 SLLNRGILSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEF  101 (237)
T ss_pred             HHHhcCchHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHH
Confidence            345544 48899999999999999998 667899999998764310                         112356899


Q ss_pred             HHHHHhhcCCCCCcceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhh
Q 013220           84 EVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRE  162 (447)
Q Consensus        84 ~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~  162 (447)
                      +++..+.+.    ...+.+++..        ...++||||+ |.++.......  ..+....+..++.|++.+|++||+.
T Consensus       102 ~~L~~L~~~----~i~~p~~~~~--------~~~~lV~E~~~g~~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~LH~~  167 (237)
T smart00090      102 RNLQRLYEA----GVPVPKPIAW--------RRNVLVMEFIGGDGLPAPRLKD--VEPEEEEEFELYDDILEEMRKLYKE  167 (237)
T ss_pred             HHHHHHHhc----CCCCCeeeEe--------cCceEEEEEecCCccccccccc--CCcchHHHHHHHHHHHHHHHHHHhc
Confidence            999999642    1222233321        1247999999 54554433221  2355666789999999999999996


Q ss_pred             CC-cccccCCCCCeEe
Q 013220          163 LG-IIHTDLKPENILL  177 (447)
Q Consensus       163 ~g-IiH~Dikp~Nill  177 (447)
                       | |+|+|+||+||++
T Consensus       168 -g~iiH~Dikp~NIli  182 (237)
T smart00090      168 -GELVHGDLSEYNILV  182 (237)
T ss_pred             -CCEEeCCCChhhEEE
Confidence             9 9999999999999

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=1.8e-16  Score=159.40  Aligned_cols=174  Identities=28%  Similarity=0.440  Sum_probs=128.7

Q ss_pred             eEEEEEecc-cccHHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          116 HLCMVLEFL-GDSLLRLIKYSR-YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       116 ~~~lvmE~~-~~~L~~~~~~~~-~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ++||.|+.| ..+|.+.+.+.+ ....+......++.|+..|++|   + |.+|+|+||.||.+.               
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y---k-~~ihrdlkp~nif~~---------------  390 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY---K-GLIHRDLKPSNIFFS---------------  390 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh---c-cchhhhccccccccc---------------
Confidence            799999999 788888886432 3346667889999999999999   6 999999999999993               


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc-----
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-----  268 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~-----  268 (447)
                                                                               .+..+|+.|||+......     
T Consensus       391 ---------------------------------------------------------~d~q~kIgDFgl~ts~~~~~~~~  413 (516)
T KOG1033|consen  391 ---------------------------------------------------------DDDQLKIGDFGLVTSQDKDETVA  413 (516)
T ss_pred             ---------------------------------------------------------cchhhhhhhhhheeecccCCccc
Confidence                                                                     345799999999865442     


Q ss_pred             ----ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhC-CCCCCCCCCCCCCCchHHHHHHHHHh-CCCCHHh
Q 013220          269 ----QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATG-DMLFAPKSGQGFCEDEDHLALMMELI-GKMPRKI  342 (447)
Q Consensus       269 ----~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g-~~Pf~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~  342 (447)
                          ..+..+||..|++||.+.+.-|+.++||||||++|++++.- ...|.            .+.-...+. |..|+.+
T Consensus       414 ~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~e------------r~~t~~d~r~g~ip~~~  481 (516)
T KOG1033|consen  414 PAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFSTQFE------------RIATLTDIRDGIIPPEF  481 (516)
T ss_pred             chhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhccHHH------------HHHhhhhhhcCCCChHH
Confidence                24556899999999999999999999999999999999972 12211            111111110 1111111


Q ss_pred             hhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccc
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  416 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~  416 (447)
                                                            -.+.+ .-.+||..||.+.|.+||++.+...|+|.+
T Consensus       482 --------------------------------------~~d~p-~e~~ll~~lls~~p~~RP~~~~~~~~~~~~  516 (516)
T KOG1033|consen  482 --------------------------------------LQDYP-EEYTLLQQLLSPSPEERPSAIEVALHEFLQ  516 (516)
T ss_pred             --------------------------------------hhcCc-HHHHHHHHhcCCCcccCchHHHHhhhhhcC
Confidence                                                  01112 344899999999999999988888888753

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.61  E-value=2.1e-15  Score=139.15  Aligned_cols=132  Identities=30%  Similarity=0.370  Sum_probs=93.3

Q ss_pred             ccccccCccccCCc-eEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH-----------------------hHHHH
Q 013220           24 YHAVRVGDLFNGGR-YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ-----------------------FAQAA   79 (447)
Q Consensus        24 ~~~~~~g~~~~~~~-y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~-----------------------~~~~~   79 (447)
                      |..+..+.+.-.+. |.+.+.||.|+||.||+|.+. +++.||||++.....                       .....
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~i~~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (198)
T cd05144           2 YDYLALHTLVKRGVVESLGNQIGVGKESDVYLALDP-DGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAA   80 (198)
T ss_pred             ccHHHHHHHHHcCchhhcCCccccCcceEEEEEEcC-CCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHH
Confidence            34444555555443 889999999999999999874 789999997653210                       11235


Q ss_pred             HHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHH
Q 013220           80 LHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDY  158 (447)
Q Consensus        80 ~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~  158 (447)
                      ..|+.++..+.+..    ..+...++.        ...++||||+ |.++.....        ......++.+++.++.+
T Consensus        81 ~~E~~~l~~l~~~~----i~v~~~~~~--------~~~~lv~e~~~g~~L~~~~~--------~~~~~~~~~~i~~~l~~  140 (198)
T cd05144          81 QKEFAALKALYEEG----FPVPKPIDW--------NRHAVVMEYIDGVELYRVRV--------LEDPEEVLDEILEEIVK  140 (198)
T ss_pred             HHHHHHHHHHHHcC----CCCCceeec--------CCceEEEEEeCCcchhhccc--------cccHHHHHHHHHHHHHH
Confidence            67888888885432    123333321        2358999999 666654321        13456788999999999


Q ss_pred             HHhhCCcccccCCCCCeEe
Q 013220          159 LHRELGIIHTDLKPENILL  177 (447)
Q Consensus       159 lH~~~gIiH~Dikp~Nill  177 (447)
                      +|+. ||+|+||||+||++
T Consensus       141 lh~~-gi~H~Dl~p~Nill  158 (198)
T cd05144         141 AYKH-GIIHGDLSEFNILV  158 (198)
T ss_pred             HHHC-CCCcCCCCcccEEE
Confidence            9996 99999999999999

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.58  E-value=1.8e-14  Score=133.87  Aligned_cols=117  Identities=21%  Similarity=0.276  Sum_probs=87.6

Q ss_pred             EeecccCceEEEEEEeCCCCeEEEEEEechhH---------HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           42 RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---------QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---------~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      +.||+|++|.||+|.+  .+..+++|+.....         .....+.+|++++..+.+      ++|.....++..   
T Consensus         2 ~~l~~G~~~~vy~~~~--~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~------~~i~~p~~~~~~---   70 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF--LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARK------AGVNVPAVYFVD---   70 (211)
T ss_pred             cccccCceEEEEEEee--CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHH------CCCCCCeEEEEe---
Confidence            5789999999999976  56678889754221         112357789999999853      334333333332   


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEe
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL  177 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill  177 (447)
                       ....+++|||+ |.+|.+.+....     . ....++.+++.+|+++|+. |++|+|++|.||++
T Consensus        71 -~~~~~lv~e~~~G~~L~~~~~~~~-----~-~~~~i~~~i~~~l~~lH~~-~i~H~Dl~p~Nil~  128 (211)
T PRK14879         71 -PENFIIVMEYIEGEPLKDLINSNG-----M-EELELSREIGRLVGKLHSA-GIIHGDLTTSNMIL  128 (211)
T ss_pred             -CCCCEEEEEEeCCcCHHHHHHhcc-----H-HHHHHHHHHHHHHHHHHhC-CcccCCCCcccEEE
Confidence             24678999999 788988775321     2 7788999999999999996 99999999999999

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.56  E-value=3.4e-14  Score=130.87  Aligned_cols=113  Identities=21%  Similarity=0.284  Sum_probs=82.0

Q ss_pred             eecccCceEEEEEEeCCCCeEEEEEEechhH---------HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           43 KLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---------QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        43 ~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---------~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      .||+|+||+||+|..  .+..+++|+.....         .....+.+|+++++.+.+..    ..+..++..  .    
T Consensus         1 ~ig~G~~~~vy~~~~--~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~----i~~p~~~~~--~----   68 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF--LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAG----VNTPVVYDV--D----   68 (199)
T ss_pred             CCCCCceEEEEEeec--CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCC----CCCCEEEEE--E----
Confidence            379999999999974  56788889744211         11345778999999996432    122222222  1    


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEe
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL  177 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill  177 (447)
                      ....+++|||+ |.+|.+.+....         ..++.+++.+|+++|+. |++|+|++|+||++
T Consensus        69 ~~~~~lv~e~~~g~~l~~~~~~~~---------~~~~~~i~~~l~~lH~~-gi~H~Dl~~~Nil~  123 (199)
T TIGR03724        69 PDNKTIVMEYIEGKPLKDVIEEGN---------DELLREIGRLVGKLHKA-GIVHGDLTTSNIIV  123 (199)
T ss_pred             CCCCEEEEEEECCccHHHHHhhcH---------HHHHHHHHHHHHHHHHC-CeecCCCCcceEEE
Confidence            23568999999 788887664321         17889999999999996 99999999999999

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.53  E-value=2.6e-14  Score=146.09  Aligned_cols=200  Identities=20%  Similarity=0.239  Sum_probs=144.0

Q ss_pred             CcceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCc-ccccCCCC
Q 013220           96 NEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGI-IHTDLKPE  173 (447)
Q Consensus        96 ~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gI-iH~Dikp~  173 (447)
                      .|.|+.++++...+.    ..+++|.+|| .|+|.+.+... ...++..-...+++.++.||+|+|.. .| .|+.++..
T Consensus         5 ~h~n~~~f~g~~~~~----~~~~~i~~~c~rGsl~D~i~~~-~~~~d~~F~~s~~rdi~~Gl~ylh~s-~i~~hg~l~s~   78 (484)
T KOG1023|consen    5 DHDNLNKFIGASVDG----PEMIVIWEYCSRGSLLDILSNE-DIKLDYFFILSFIRDISKGLAYLHNS-PIGYHGALKSS   78 (484)
T ss_pred             chhhhhhheeeEecC----CceEEEEeeecCccHHhHHhcc-ccCccHHHHHHHHHHHHHHHHHHhcC-cceeeeeeccc
Confidence            789999999998854    7899999999 89999988652 24477777888899999999999986 44 89999999


Q ss_pred             CeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCccc
Q 013220          174 NILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDM  253 (447)
Q Consensus       174 Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (447)
                      |+++                                                                        +..+
T Consensus        79 nClv------------------------------------------------------------------------d~~w   86 (484)
T KOG1023|consen   79 NCLV------------------------------------------------------------------------DSRW   86 (484)
T ss_pred             ccee------------------------------------------------------------------------eeeE
Confidence            9999                                                                        5578


Q ss_pred             ceeEeecCccccccc-----ccccCCCCCCccChHHhhcC---C----CCccchhHhHHHHHHHHhhCCCCCCCCCCCCC
Q 013220          254 RCKVVDFGNACRANK-----QFAEEIQTRQYRAPEVILRA---G----YSFSVDMWSFACTAFELATGDMLFAPKSGQGF  321 (447)
Q Consensus       254 ~~kL~Dfg~a~~~~~-----~~~~~~gt~~y~aPE~l~~~---~----~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~  321 (447)
                      .+||.|||+......     ......-..-|.|||.+.+.   .    .+.+.||||+|++++++++..-||....... 
T Consensus        87 ~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~~~~~~-  165 (484)
T KOG1023|consen   87 VLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSGPFDLRNLVE-  165 (484)
T ss_pred             EEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccCccccccccC-
Confidence            899999999865432     11111124568999999763   1    3678999999999999999999998754221 


Q ss_pred             CCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCC
Q 013220          322 CEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPE  401 (447)
Q Consensus       322 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~  401 (447)
                          ...+.+..+.+.....       .                    ...+...     .+..+++..++..||..+|+
T Consensus       166 ----~~~eii~~~~~~~~~~-------~--------------------rP~i~~~-----~e~~~~l~~l~~~cw~e~P~  209 (484)
T KOG1023|consen  166 ----DPDEIILRVKKGGSNP-------F--------------------RPSIELL-----NELPPELLLLVARCWEEIPE  209 (484)
T ss_pred             ----ChHHHHHHHHhcCCCC-------c--------------------Ccchhhh-----hhcchHHHHHHHHhcccChh
Confidence                1122222221100000       0                    0000000     03344788999999999999


Q ss_pred             CCCChHHHh
Q 013220          402 KRPTAQQCL  410 (447)
Q Consensus       402 kRpta~elL  410 (447)
                      +||+++++-
T Consensus       210 ~rPs~~~i~  218 (484)
T KOG1023|consen  210 KRPSIEQIR  218 (484)
T ss_pred             hCccHHHHH
Confidence            999998874

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.52  E-value=7.7e-14  Score=147.97  Aligned_cols=121  Identities=18%  Similarity=0.231  Sum_probs=87.7

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEech---h----HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKS---A----AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~---~----~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      ..|...+.||+|+||+||+|.+......+.+++.+.   .    ......+.+|+++++.+      .|++|+....+..
T Consensus       333 ~~~~~~~~iG~G~~g~Vy~~~~~~~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l------~~~~i~~p~~~~~  406 (535)
T PRK09605        333 RRKIPDHLIGKGAEADIKKGEYLGRDAVIKERVPKGYRHPELDERLRTERTRAEARLLSEA------RRAGVPTPVIYDV  406 (535)
T ss_pred             cccCccceeccCCcEEEEEEeecCccceeEEEecccccchhHHHHHHHHHHHHHHHHHHhh------cccCCCeeEEEEE
Confidence            446778899999999999997654433222222221   1    11234678899999999      4555555444333


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEe
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL  177 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill  177 (447)
                      .    ....++||||+ +++|.+.+.          ....++.+++.+|++||+. ||+|||+||+||++
T Consensus       407 ~----~~~~~lv~E~~~g~~L~~~l~----------~~~~~~~~i~~~L~~lH~~-giiHrDlkp~NILl  461 (535)
T PRK09605        407 D----PEEKTIVMEYIGGKDLKDVLE----------GNPELVRKVGEIVAKLHKA-GIVHGDLTTSNFIV  461 (535)
T ss_pred             e----CCCCEEEEEecCCCcHHHHHH----------HHHHHHHHHHHHHHHHHhC-CCccCCCChHHEEE
Confidence            2    23578999999 888887664          3467899999999999996 99999999999999

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.51  E-value=8.4e-14  Score=126.83  Aligned_cols=119  Identities=31%  Similarity=0.399  Sum_probs=79.2

Q ss_pred             EEeecccCceEEEEEEeCCCCeEEEEEEechhHHhH---HH----------------------HHHHHHHHHHhhcCCCC
Q 013220           41 QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFA---QA----------------------ALHEIEVLSAVADGDPS   95 (447)
Q Consensus        41 ~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~---~~----------------------~~~E~~~l~~l~~~~~~   95 (447)
                      .+.||+|+||+||+|.+. +++.||||++.......   ..                      ...|.+.+..+.+.   
T Consensus         2 ~~~lg~G~~g~Vy~a~~~-~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~---   77 (187)
T cd05119           2 GGPIGTGKEADVYLALDG-DGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEA---   77 (187)
T ss_pred             CcccccccceeEEEEECC-CCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHc---
Confidence            457999999999999876 78999999876432110   11                      13456666666432   


Q ss_pred             CcceeeeecccccccCCCcceEEEEEecc-cccHH-HHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh-hCCcccccCCC
Q 013220           96 NEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLL-RLIKYSRYKGLELNKVREICKYILTGLDYLHR-ELGIIHTDLKP  172 (447)
Q Consensus        96 ~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~-~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~-~~gIiH~Dikp  172 (447)
                       ...+.+.+..        ...++||||+ ++.+. ..+....   . ...+..++.+++.++.++|. . ||+|+|+||
T Consensus        78 -~~~~~~~~~~--------~~~~lv~e~~~g~~~~~~~l~~~~---~-~~~~~~~~~~~~~~l~~lh~~~-~ivH~Dl~p  143 (187)
T cd05119          78 -GVPVPKPIDL--------NRHVLVMEFIGGDGIPAPRLKDVR---L-LEDPEELYDQILELMRKLYREA-GLVHGDLSE  143 (187)
T ss_pred             -CCCCCceEec--------CCCEEEEEEeCCCCccChhhhhhh---h-cccHHHHHHHHHHHHHHHhhcc-CcCcCCCCh
Confidence             1112222222        2358999999 42221 1111111   1 15678899999999999999 7 999999999


Q ss_pred             CCeEe
Q 013220          173 ENILL  177 (447)
Q Consensus       173 ~Nill  177 (447)
                      +||++
T Consensus       144 ~Nili  148 (187)
T cd05119         144 YNILV  148 (187)
T ss_pred             hhEEE
Confidence            99999

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=1.6e-15  Score=161.30  Aligned_cols=257  Identities=23%  Similarity=0.308  Sum_probs=187.6

Q ss_pred             CceEEEEeecccCceEEEEEEeCC-CCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTR-TSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~-~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ..|.+.+.||+|+|+.|-++.... +...+|.|.+...   .........|..+-..+.     .|.|++.+++...+. 
T Consensus        20 ~~~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s-----~h~n~~~~~~~~~~~-   93 (601)
T KOG0590|consen   20 SQYKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLS-----KHSNTVHMIEPSSSP-   93 (601)
T ss_pred             ccccccccccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCcccccccccc-----ccccccccCCccCCC-
Confidence            578899999999999999987643 4556666654433   223334444666666663     499999999988754 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH-hhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLH-RELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH-~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                         +..+++++|. |++++..+.......++...+..++.|+..++.|+| .. ++.|+|+||+|.++..          
T Consensus        94 ---~~~~~~~~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~~~-~~~h~~ikP~n~~l~~----------  159 (601)
T KOG0590|consen   94 ---RSYLLSLSYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHPEN-GVTHRDIKPSNSLLDE----------  159 (601)
T ss_pred             ---cccccccCcccccccccccccCCccCCCCcchhhhhhhhccCccccCccc-ccccCCCCCccchhcc----------
Confidence               7899999999 888887773222125677788899999999999999 75 9999999999999843          


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCccc-ceeEeecCccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDM-RCKVVDFGNACRANK  268 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~kL~Dfg~a~~~~~  268 (447)
                                                                                    .. .++..|||+|.....
T Consensus       160 --------------------------------------------------------------s~~~l~~~df~~At~~~~  177 (601)
T KOG0590|consen  160 --------------------------------------------------------------SGSALKIADFGLATAYRN  177 (601)
T ss_pred             --------------------------------------------------------------CCCcccCCCchhhccccc
Confidence                                                                          33 689999999964432


Q ss_pred             ------ccccCCC-CCCccChHHhhcCC-CCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCH
Q 013220          269 ------QFAEEIQ-TRQYRAPEVILRAG-YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  340 (447)
Q Consensus       269 ------~~~~~~g-t~~y~aPE~l~~~~-~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~  340 (447)
                            .....+| ++.|.|||...+.. .....|+||.|+++..+++|..|+........                   
T Consensus       178 ~~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~~-------------------  238 (601)
T KOG0590|consen  178 KNGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSRKDG-------------------  238 (601)
T ss_pred             cCCcceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCccccccccc-------------------
Confidence                  2233478 99999999998854 46889999999999999999999876542210                   


Q ss_pred             HhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccc
Q 013220          341 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~  417 (447)
                                .++......   .           ...............+++.+++..+|.+|.+.+++-.+||+..
T Consensus       239 ----------~~~~~~~~~---~-----------~~~~~~~~~~~~~~~~~l~k~l~~~~~~r~s~~~~~~d~~~~~  291 (601)
T KOG0590|consen  239 ----------RYSSWKSNK---G-----------RFTQLPWNSISDQAHDLLHKILKENPSNRLSIEELKLDNWLSS  291 (601)
T ss_pred             ----------cceeecccc---c-----------ccccCccccCChhhhhcccccccCCchhccccccccccccccc
Confidence                      000000000   0           0000112234557779999999999999999999999999998

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.41  E-value=3.1e-12  Score=121.60  Aligned_cols=122  Identities=20%  Similarity=0.191  Sum_probs=81.9

Q ss_pred             eec-ccCceEEEEEEeCCCCeEEEEEEechhH--------------HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           43 KLG-WGQFSIVWLAYDTRTSSYVALKIQKSAA--------------QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        43 ~lG-~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--------------~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      .|| .|+.|+||.+...  +..+++|.+....              .....+.+|++++..+.+..    ..+++.++..
T Consensus        38 ~lg~~~g~gtv~~v~~~--~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~g----i~vP~pl~~~  111 (239)
T PRK01723         38 VVGSAKGRGTTWFVQTP--GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAG----LPVPRPIAAR  111 (239)
T ss_pred             eeecCCCCccEEEEEeC--CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCC----CCCceeEeee
Confidence            466 7888888888653  6788998764210              11235678999999996532    1234444443


Q ss_pred             cccCCCcceEEEEEecc-c-ccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEee
Q 013220          108 KHAGPNGQHLCMVLEFL-G-DSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV  178 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~-~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~  178 (447)
                      ..........++|||++ | .+|...+..   ..+++.    .+.+++.+|.+||++ ||+|+|+||.|||+.
T Consensus       112 ~~~~~~~~~~~lV~e~l~G~~~L~~~l~~---~~l~~~----~~~~i~~~l~~lH~~-GI~HrDlkp~NILv~  176 (239)
T PRK01723        112 VVRHGLFYRADILIERIEGARDLVALLQE---APLSEE----QWQAIGQLIARFHDA-GVYHADLNAHNILLD  176 (239)
T ss_pred             eeecCcceeeeEEEEecCCCCCHHHHHhc---CCCCHH----HHHHHHHHHHHHHHC-CCCCCCCCchhEEEc
Confidence            22211112356999999 5 478777643   234443    367899999999997 999999999999993

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.41  E-value=1.5e-12  Score=112.81  Aligned_cols=118  Identities=23%  Similarity=0.291  Sum_probs=90.0

Q ss_pred             EEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEE
Q 013220           40 AQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCM  119 (447)
Q Consensus        40 l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~l  119 (447)
                      +.+.||.|.++.||++....  ..+++|....... ...+.+|+++++.+.+.    ...+++++..+..    ....++
T Consensus         2 ~~~~i~~g~~~~v~~~~~~~--~~~~iK~~~~~~~-~~~~~~e~~~~~~l~~~----~~~~p~~~~~~~~----~~~~~~   70 (155)
T cd05120           2 SIKLLKGGLTNRVYLLGTKD--EDYVLKINPSREK-GADREREVAILQLLARK----GLPVPKVLASGES----DGWSYL   70 (155)
T ss_pred             cceecccccccceEEEEecC--CeEEEEecCCCCc-hhHHHHHHHHHHHHHHc----CCCCCeEEEEcCC----CCccEE
Confidence            45789999999999998754  7899998766543 45788999999999753    2456666655543    257999


Q ss_pred             EEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhh--CCcccccCCCCCeEe
Q 013220          120 VLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRE--LGIIHTDLKPENILL  177 (447)
Q Consensus       120 vmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~--~gIiH~Dikp~Nill  177 (447)
                      +|||+ +..+..+         +......++.+++.+++.+|..  .+++|+|++|.||++
T Consensus        71 v~e~~~g~~~~~~---------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~  122 (155)
T cd05120          71 LMEWIEGETLDEV---------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILV  122 (155)
T ss_pred             EEEecCCeecccC---------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEE
Confidence            99999 5545332         3445567889999999999983  169999999999999

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.35  E-value=7.1e-13  Score=135.83  Aligned_cols=253  Identities=22%  Similarity=0.237  Sum_probs=183.4

Q ss_pred             CceEEEEeecc--cCceEEEEEEe--CCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           36 GRYIAQRKLGW--GQFSIVWLAYD--TRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        36 ~~y~l~~~lG~--G~~g~Vy~a~~--~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      ..+.+.+.+|.  |.+|.||.+.-  ..+...+|+|..+..   ......-.+|+....++.     .|++.++.+..|.
T Consensus       114 ~~~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~-----~~~~~v~~~~~~e  188 (524)
T KOG0601|consen  114 QRFPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKID-----SHENPVRDSPAWE  188 (524)
T ss_pred             hhcccccccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccC-----ccccccccCcccc
Confidence            56788889999  99999999977  778899999963322   111223445665555554     8899999888877


Q ss_pred             ccCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHH----HHHHHHhhCCcccccCCCCCeEeeecCCCC
Q 013220          109 HAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILT----GLDYLHRELGIIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~----aL~~lH~~~gIiH~Dikp~Nill~~~~~~~  184 (447)
                      .    +...++-.|.|+.++...... ...-++...+.....+...    ||..+|+. +|+|.|+||+||+...+    
T Consensus       189 ~----~~~lfiqtE~~~~sl~~~~~~-~~~~~p~~~l~~~~~~~~~~~~~al~~~hs~-~~~~~~~kp~~i~~~~~----  258 (524)
T KOG0601|consen  189 G----SGILFIQTELCGESLQSYCHT-PCNFLPDNLLWNSLRDWLSRDVTALSHLHSN-NIVHDDLKPANIFTTSD----  258 (524)
T ss_pred             c----CCcceeeeccccchhHHhhhc-ccccCCchhhhhHHhhhhhcccccccccCCC-cccccccchhheecccc----
Confidence            4    579999999999888887753 3334788888899999999    99999996 99999999999999431    


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                         ...++++|||...
T Consensus       259 -------------------------------------------------------------------~~s~~~~df~~v~  271 (524)
T KOG0601|consen  259 -------------------------------------------------------------------WTSCKLTDFGLVS  271 (524)
T ss_pred             -------------------------------------------------------------------cceeecCCcceeE
Confidence                                                                               2668999999887


Q ss_pred             cccccc-c------cC-CCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhC
Q 013220          265 RANKQF-A------EE-IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIG  336 (447)
Q Consensus       265 ~~~~~~-~------~~-~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g  336 (447)
                      .+.... .      .. .|..-|++||.+.+ .++.+.||+++|.++.+...+..++....    ...+.++...+    
T Consensus       272 ~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~-l~~~~~di~sl~ev~l~~~l~~~~~~~g~----~~~W~~~r~~~----  342 (524)
T KOG0601|consen  272 KISDGNFSSVFKVSKRPEGDCIYAAKELLNG-LATFASDIFSLGEVILEAILGSHLPSVGK----NSSWSQLRQGY----  342 (524)
T ss_pred             EccCCccccceeeeecCCCCceEeChhhhcc-ccchHhhhcchhhhhHhhHhhcccccCCC----CCCcccccccc----
Confidence            654321 1      11 46788999999854 57899999999999999888876554320    00111110000    


Q ss_pred             CCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccc
Q 013220          337 KMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  416 (447)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~  416 (447)
                       .|.                                      .+-...+.++...+..|++.+|..|++++.+++|+++.
T Consensus       343 -ip~--------------------------------------e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~l~~i~  383 (524)
T KOG0601|consen  343 -IPL--------------------------------------EFCEGGSSSLRSVTSQMLDEDPRLRLTAQILTALNVIH  383 (524)
T ss_pred             -Cch--------------------------------------hhhcCcchhhhhHHHHhcCcchhhhhHHHHHhcccccc
Confidence             000                                      01112234555689999999999999999999999988


Q ss_pred             cc
Q 013220          417 LR  418 (447)
Q Consensus       417 ~~  418 (447)
                      ..
T Consensus       384 s~  385 (524)
T KOG0601|consen  384 SK  385 (524)
T ss_pred             ch
Confidence            54

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.24  E-value=1.8e-11  Score=116.88  Aligned_cols=204  Identities=21%  Similarity=0.283  Sum_probs=136.3

Q ss_pred             CcceeeeecccccccCC-CcceEEEEEecc-cccHHHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHHhh-CCcccccC
Q 013220           96 NEKCVIRLIDHFKHAGP-NGQHLCMVLEFL-GDSLLRLIKYSRYK--GLELNKVREICKYILTGLDYLHRE-LGIIHTDL  170 (447)
Q Consensus        96 ~~~~Iv~~~~~~~~~~~-~~~~~~lvmE~~-~~~L~~~~~~~~~~--~l~~~~~~~i~~qil~aL~~lH~~-~gIiH~Di  170 (447)
                      .|.||++++.+|.+... +.....++.||| .+++.+++++-.++  .+..+...+|+.||+.||.|||+. --|+|+++
T Consensus       125 vHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs~~Ppiihgnl  204 (458)
T KOG1266|consen  125 VHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHSCDPPIIHGNL  204 (458)
T ss_pred             HHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhccCCccccCCc
Confidence            57789999999998765 556899999999 88999988764433  377888899999999999999982 26999999


Q ss_pred             CCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCC
Q 013220          171 KPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDG  250 (447)
Q Consensus       171 kp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (447)
                      .-+-|++.+                                                                       
T Consensus       205 Tc~tifiq~-----------------------------------------------------------------------  213 (458)
T KOG1266|consen  205 TCDTIFIQH-----------------------------------------------------------------------  213 (458)
T ss_pred             chhheeecC-----------------------------------------------------------------------
Confidence            999998843                                                                       


Q ss_pred             cccceeEeecCcc-----cccc--cccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCC-CCCCCCCCCC
Q 013220          251 IDMRCKVVDFGNA-----CRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDML-FAPKSGQGFC  322 (447)
Q Consensus       251 ~~~~~kL~Dfg~a-----~~~~--~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~P-f~~~~~~~~~  322 (447)
                       ++-+|+.--...     ....  -......+-++|.|||.-.-...+.++|||++|.-..+|..+..- -.+.++.   
T Consensus       214 -ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlemailEiq~tnseS~~---  289 (458)
T KOG1266|consen  214 -NGLIKIGSVAPDSTHPSVNSTREAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGMCALEMAILEIQSTNSESKV---  289 (458)
T ss_pred             -CceEEecccCccccchhhhhhhHhhhhccccCCccccCCcCcccccccchhhhhhhHHHHHHHHheeccCCCccee---
Confidence             222232111100     0000  011112356789999886655667899999999888888877542 1111110   


Q ss_pred             CchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCC
Q 013220          323 EDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEK  402 (447)
Q Consensus       323 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~k  402 (447)
                      ..+..++.  .++|.                                              ....-++++.+||+..|..
T Consensus       290 ~~ee~ia~--~i~~l----------------------------------------------en~lqr~~i~kcl~~eP~~  321 (458)
T KOG1266|consen  290 EVEENIAN--VIIGL----------------------------------------------ENGLQRGSITKCLEGEPNG  321 (458)
T ss_pred             ehhhhhhh--heeec----------------------------------------------cCccccCcCcccccCCCCC
Confidence            00000000  00000                                              0112347899999999999


Q ss_pred             CCChHHHhcCcccccccCCc
Q 013220          403 RPTAQQCLQHPWLSLRNSTR  422 (447)
Q Consensus       403 Rpta~elL~hp~f~~~~~~~  422 (447)
                      ||++.++|.||-+-..++..
T Consensus       322 rp~ar~llfHpllfeVhslk  341 (458)
T KOG1266|consen  322 RPDARLLLFHPLLFEVHSLK  341 (458)
T ss_pred             CcchhhhhcCceeeecchHH
Confidence            99999999999777665443

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.19  E-value=2.1e-10  Score=120.24  Aligned_cols=129  Identities=17%  Similarity=0.263  Sum_probs=76.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-----------------------------------HhHHH--
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-----------------------------------QFAQA--   78 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-----------------------------------~~~~~--   78 (447)
                      ..|.. +.||+|++|.||+|+...+|+.||||+++...                                   ...+.  
T Consensus       120 ~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~  198 (537)
T PRK04750        120 DDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLH  198 (537)
T ss_pred             HhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHH
Confidence            35776 78999999999999988889999999976331                                   11112  


Q ss_pred             ----HHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCC-----CCHHHHHHH
Q 013220           79 ----ALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKG-----LELNKVREI  148 (447)
Q Consensus        79 ----~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~-----l~~~~~~~i  148 (447)
                          +.+|.+.+..+....  .+...+.+-.+|.+.   ....++||||+ |..+.++-.... .+     +.+..+..+
T Consensus       199 ~ElD~~~Ea~N~~~~~~~f--~~~~~v~VP~v~~d~---st~~VLvmE~i~G~~l~d~~~l~~-~g~d~~~la~~~v~~~  272 (537)
T PRK04750        199 DELDLMREAANASQLRRNF--EDSDMLYVPEVYWDY---CSETVMVMERMYGIPVSDVAALRA-AGTDMKLLAERGVEVF  272 (537)
T ss_pred             HhhCHHHHHHHHHHHHHHc--cCCCCeecceeeccc---CCCceEEEeeecCccHHhHHHHHh-cCCCHHHHHHHHHHHH
Confidence                233444444443221  111112222222221   13577999999 777866422111 22     233334444


Q ss_pred             HHHHHHHHHHHHhhCCcccccCCCCCeEeee
Q 013220          149 CKYILTGLDYLHRELGIIHTDLKPENILLVS  179 (447)
Q Consensus       149 ~~qil~aL~~lH~~~gIiH~Dikp~Nill~~  179 (447)
                      +.|++       .. |++|+|+||.||++..
T Consensus       273 ~~Qif-------~~-GffHaDpHPGNIlv~~  295 (537)
T PRK04750        273 FTQVF-------RD-GFFHADMHPGNIFVSY  295 (537)
T ss_pred             HHHHH-------hC-CeeeCCCChHHeEEec
Confidence            44443       45 9999999999999943

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.18  E-value=1.3e-11  Score=133.01  Aligned_cols=320  Identities=18%  Similarity=0.137  Sum_probs=187.6

Q ss_pred             CCCCccccCCCCCCCccccccC-ccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHH
Q 013220            9 SEDDDEGIDSYRKGGYHAVRVG-DLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLS   87 (447)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~   87 (447)
                      +..+..+=+.-++..+-|...- +...-+.+.+.+-+-+|.++.++.+.-..++..+++|+..........-..++.--+
T Consensus       776 ss~eS~pgdp~~sls~sP~sp~~yrsS~d~~~i~~p~qS~sp~ss~p~~pa~sgh~~~~~v~~~ap~i~~~~~~s~r~~s  855 (1205)
T KOG0606|consen  776 SSSESLPGDPTRSLSASPRSPTKYRSSPDGFEITKPSQSGSPSSSFPASPAGSGHTRPSKVHGLAPKIRTNDYESIRSKS  855 (1205)
T ss_pred             cccccCCCCcccccccCCCCcccccCCCccceecccccCCCCcccccCCccccccccchhhhccchhhccccccccCCcc
Confidence            3333333344455555555433 222236678888999999999999987777888888865544321110000110000


Q ss_pred             HhhcCCCCCcceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcc
Q 013220           88 AVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGII  166 (447)
Q Consensus        88 ~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIi  166 (447)
                      .+  .....+|.++.....|.    -....+++|+|+ +++|.+.+....  +.+.+-++.+...+..++++||+. .+.
T Consensus       856 ~~--~i~p~~P~v~~~~~s~~----~rsP~~L~~~~~~~~~~~Skl~~~~--~~saepaRs~i~~~vqs~e~L~s~-~r~  926 (1205)
T KOG0606|consen  856 NI--LITPRSPAVVRSFPSFP----CRSPLPLVGHYLNGGDLPSKLHNSG--CLSAEPARSPILERVQSLESLHSS-LRK  926 (1205)
T ss_pred             Cc--cccCCCCceecccCCCC----CCCCcchhhHHhccCCchhhhhcCC--CcccccccchhHHHHhhhhccccc-hhh
Confidence            01  01124466665544432    446899999999 778888775433  366667778888899999999985 799


Q ss_pred             cccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCc
Q 013220          167 HTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPER  246 (447)
Q Consensus       167 H~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (447)
                      |+|++|+|++....... +... .+.    -.                             ..+......+...+     
T Consensus       927 h~~~~p~~~l~~~~gh~-~l~~-~~t----~~-----------------------------~vg~~~p~~~~sg~-----  966 (1205)
T KOG0606|consen  927 HRDLKPDSLLIAYDGHR-PLTD-FGT----LS-----------------------------KVGLIPPTTDLSGP-----  966 (1205)
T ss_pred             cccccccchhhcccCCc-ccCc-ccc----cc-----------------------------ccccccCcCCcccc-----
Confidence            99999999997442100 0000 000    00                             00000000000000     


Q ss_pred             cCCCcccceeEeecCccccccc-------ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCC
Q 013220          247 CLDGIDMRCKVVDFGNACRANK-------QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQ  319 (447)
Q Consensus       247 ~~~~~~~~~kL~Dfg~a~~~~~-------~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~  319 (447)
                           ...+..-.++......+       .....++|+-|.+||.+.+.....++|.|++|+++++.++|..||.....+
T Consensus       967 -----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~pp~na~tpq 1041 (1205)
T KOG0606|consen  967 -----SSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGIPPFNAETPQ 1041 (1205)
T ss_pred             -----cccCccccccccccccccccchhhccccccCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCCCCCCCcchh
Confidence                 00000111111111110       112236899999999999999999999999999999999999999766422


Q ss_pred             CCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccC
Q 013220          320 GFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFT  399 (447)
Q Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~d  399 (447)
                      .          +++-+......|                                   +.-+...+....+++.+.|..+
T Consensus      1042 ~----------~f~ni~~~~~~~-----------------------------------p~g~~~~s~~aq~~~~~ll~~~ 1076 (1205)
T KOG0606|consen 1042 Q----------IFENILNRDIPW-----------------------------------PEGPEEGSYEAQDLINRLLTEE 1076 (1205)
T ss_pred             h----------hhhccccCCCCC-----------------------------------CCCccccChhhhhhhhhhhccC
Confidence            1          111111111111                                   0122334667889999999999


Q ss_pred             CCCCCChH---HHhcCcccccccCCcccccc
Q 013220          400 PEKRPTAQ---QCLQHPWLSLRNSTRDETKN  427 (447)
Q Consensus       400 P~kRpta~---elL~hp~f~~~~~~~~~~~~  427 (447)
                      |.+|..+.   ++-.||||+...--+...++
T Consensus      1077 ~~qr~~a~~~~e~k~~~~~~~~~~~~l~~q~ 1107 (1205)
T KOG0606|consen 1077 PTQRLGAKGAAEVKGHPFFQDVDWENLALQK 1107 (1205)
T ss_pred             chhccCcccccccccCCccCCCCcccccccc
Confidence            99999887   88899999987644444443

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.17  E-value=4e-11  Score=123.12  Aligned_cols=247  Identities=18%  Similarity=0.132  Sum_probs=172.2

Q ss_pred             CceEEEEeecccCceEEEEEEeC-CCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDT-RTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~-~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|.++..||.|.|+.|+..... .++..|++|......   .....-..|+-+...+.     .|.++++++..|... 
T Consensus       265 ~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~-----~~~~~~g~~~~W~~~-  338 (524)
T KOG0601|consen  265 TDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILG-----SHLPSVGKNSSWSQL-  338 (524)
T ss_pred             CCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhh-----cccccCCCCCCcccc-
Confidence            67999999999999999998644 678899999544321   11223344666666665     788899988888854 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                         +..|+-.||| ++++.......  ..+++...+.+..|++.++-++|+. .++|+|+||.||++..+          
T Consensus       339 ---r~~~ip~e~~~~~s~~l~~~~~--~~~d~~~~~~~~~q~~~~l~~i~s~-~~~~~d~~psni~i~~~----------  402 (524)
T KOG0601|consen  339 ---RQGYIPLEFCEGGSSSLRSVTS--QMLDEDPRLRLTAQILTALNVIHSK-LFVHLDVKPSNILISND----------  402 (524)
T ss_pred             ---ccccCchhhhcCcchhhhhHHH--HhcCcchhhhhHHHHHhccccccch-hhhcccccccceeeccc----------
Confidence               6788999999 66655443222  2378888999999999999999996 99999999999999431          


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF  270 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~  270 (447)
                                                                                   .+..++.|||......-..
T Consensus       403 -------------------------------------------------------------~~~~~~~~~~~~t~~~~~~  421 (524)
T KOG0601|consen  403 -------------------------------------------------------------GFFSKLGDFGCWTRLAFSS  421 (524)
T ss_pred             -------------------------------------------------------------hhhhhccccccccccceec
Confidence                                                                         1456788888775432222


Q ss_pred             ccCCCCCCcc--ChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          271 AEEIQTRQYR--APEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       271 ~~~~gt~~y~--aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      .-....-++.  ++.......+..++|++|||+.+.+.+++...-....         +                     
T Consensus       422 ~~~~~~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~ls~~~~---------~---------------------  471 (524)
T KOG0601|consen  422 GVFHHIDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPLSESGV---------Q---------------------  471 (524)
T ss_pred             ccccccccccccchhhccccccccccccccccccccccccCcccCcccc---------c---------------------
Confidence            2222333344  4555556678899999999999999998854322111         0                     


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  416 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~  416 (447)
                                           +..+..............+..+...++..++..|+.+-++..|+=|-
T Consensus       472 ---------------------~~~i~~~~~p~~~~~~~~~q~~~kv~~~~~~~~~~l~~~l~~~~~~~  518 (524)
T KOG0601|consen  472 ---------------------SLTIRSGDTPNLPGLKLQLQVLLKVMINPDRKRRPSAVELSLHSEFY  518 (524)
T ss_pred             ---------------------ceeeecccccCCCchHHhhhhhhhhhcCCccccchhhhhhcccchhh
Confidence                                 11111122222333446777899999999999999999998886443

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.13  E-value=4e-10  Score=116.32  Aligned_cols=124  Identities=19%  Similarity=0.268  Sum_probs=77.4

Q ss_pred             EEeecccCceEEEEEEeCCCCeEEEEEEechhHHh-----------------------------------H------HHH
Q 013220           41 QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQF-----------------------------------A------QAA   79 (447)
Q Consensus        41 ~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~-----------------------------------~------~~~   79 (447)
                      .+.||+|++|.||+|+.. +|+.||||+.+.....                                   .      -.+
T Consensus       122 ~~plasaSigQVh~A~l~-~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf  200 (437)
T TIGR01982       122 EKPLAAASIAQVHRARLV-DGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDL  200 (437)
T ss_pred             CcceeeeehhheEEEEec-CCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCH
Confidence            356999999999999864 6899999996532100                                   0      024


Q ss_pred             HHHHHHHHHhhcCCCCCcce--eeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHH-H
Q 013220           80 LHEIEVLSAVADGDPSNEKC--VIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILT-G  155 (447)
Q Consensus        80 ~~E~~~l~~l~~~~~~~~~~--Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~-a  155 (447)
                      .+|.+.+..+.... .++++  |.+++..+.      ...++||||+ |.++.+...... .+.+   ...++.+++. .
T Consensus       201 ~~Ea~n~~~~~~~~-~~~~~v~vP~v~~~~~------~~~vLvmE~i~G~~L~~~~~~~~-~~~~---~~~ia~~~~~~~  269 (437)
T TIGR01982       201 RREAANASELGENF-KNDPGVYVPEVYWDRT------SERVLTMEWIDGIPLSDIAALDE-AGLD---RKALAENLARSF  269 (437)
T ss_pred             HHHHHHHHHHHHhc-CCCCCEEeCCEehhhc------CCceEEEEeECCcccccHHHHHh-cCCC---HHHHHHHHHHHH
Confidence            44555555554321 12222  223332221      2468999999 777776654321 1222   2345555555 4


Q ss_pred             HHHHHhhCCcccccCCCCCeEe
Q 013220          156 LDYLHRELGIIHTDLKPENILL  177 (447)
Q Consensus       156 L~~lH~~~gIiH~Dikp~Nill  177 (447)
                      +..+|.. |++|+|++|.||++
T Consensus       270 l~ql~~~-g~~H~D~hPgNilv  290 (437)
T TIGR01982       270 LNQVLRD-GFFHADLHPGNIFV  290 (437)
T ss_pred             HHHHHhC-CceeCCCCcccEEE
Confidence            6788986 99999999999999

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.12  E-value=1.9e-10  Score=102.67  Aligned_cols=113  Identities=21%  Similarity=0.191  Sum_probs=79.6

Q ss_pred             EEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEE
Q 013220           41 QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMV  120 (447)
Q Consensus        41 ~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lv  120 (447)
                      .+.|+.|.++.||+++..  +..|++|+.............|+++++.+.+..     .+.+++....      ...++|
T Consensus         3 ~~~l~~G~~~~vy~~~~~--~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~~~~-----~~P~~~~~~~------~~~~lv   69 (170)
T cd05151           3 ISPLKGGMTNKNYRVEVA--NKKYVVRIPGNGTELLINRENEAENSKLAAEAG-----IGPKLYYFDP------ETGVLI   69 (170)
T ss_pred             eeecCCcccCceEEEEEC--CeEEEEEeCCCCcccccCHHHHHHHHHHHHHhC-----CCCceEEEeC------CCCeEE
Confidence            467889999999999764  778999987655432345678999999986432     1223333221      234799


Q ss_pred             Eecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCc-----ccccCCCCCeEe
Q 013220          121 LEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGI-----IHTDLKPENILL  177 (447)
Q Consensus       121 mE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gI-----iH~Dikp~Nill  177 (447)
                      |||+ |.++...       ..   ....++.+++.+|+.||+. ++     +|+|++|.||++
T Consensus        70 ~e~i~G~~l~~~-------~~---~~~~~~~~l~~~l~~LH~~-~~~~~~~~HgD~~~~Nil~  121 (170)
T cd05151          70 TEFIEGSELLTE-------DF---SDPENLEKIAKLLKKLHSS-PLPDLVPCHNDLLPGNFLL  121 (170)
T ss_pred             EEecCCCccccc-------cc---cCHHHHHHHHHHHHHHhCC-CCCCceeecCCCCcCcEEE
Confidence            9999 5555322       01   1134567899999999985 75     999999999999

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.08  E-value=8.4e-10  Score=101.16  Aligned_cols=121  Identities=18%  Similarity=0.232  Sum_probs=82.2

Q ss_pred             EeecccCceEEEEEEeCC------CCeEEEEEEechh-------H----------------HhHHHHH----HHHHHHHH
Q 013220           42 RKLGWGQFSIVWLAYDTR------TSSYVALKIQKSA-------A----------------QFAQAAL----HEIEVLSA   88 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~------~~~~vaiK~~~~~-------~----------------~~~~~~~----~E~~~l~~   88 (447)
                      ..||.|--+.||.|....      .+..+|||+.+..       .                .....+.    +|++.|++
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            468999999999997543      3578999985421       1                0112233    79999999


Q ss_pred             hhcCCCCCcceeeeecccccccCCCcceEEEEEeccccc-HHH-HHHhhccCCCCHHHHHHHHHHHHHHHHHH-HhhCCc
Q 013220           89 VADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDS-LLR-LIKYSRYKGLELNKVREICKYILTGLDYL-HRELGI  165 (447)
Q Consensus        89 l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~~~~-L~~-~~~~~~~~~l~~~~~~~i~~qil~aL~~l-H~~~gI  165 (447)
                      +....    ..+.+.+..        ..-+|||||++++ +.. .+..   ..++.+.+..+..+++.+|..| |.. ||
T Consensus        83 l~~~G----v~vP~pi~~--------~~~~lvME~Ig~~~~~~~~Lkd---~~~~~~~~~~i~~~i~~~l~~l~H~~-gl  146 (197)
T cd05146          83 MQKAG----IPCPEVVVL--------KKHVLVMSFIGDDQVPAPKLKD---AKLNDEEMKNAYYQVLSMMKQLYKEC-NL  146 (197)
T ss_pred             HHHcC----CCCCeEEEe--------cCCEEEEEEcCCCCccchhhhc---cccCHHHHHHHHHHHHHHHHHHHHhC-Ce
Confidence            87542    223333432        2467999999543 321 1211   1245566778889999999998 885 99


Q ss_pred             ccccCCCCCeEee
Q 013220          166 IHTDLKPENILLV  178 (447)
Q Consensus       166 iH~Dikp~Nill~  178 (447)
                      ||+|+++.||++.
T Consensus       147 VHGDLs~~NIL~~  159 (197)
T cd05146         147 VHADLSEYNMLWH  159 (197)
T ss_pred             ecCCCCHHHEEEE
Confidence            9999999999993

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.00  E-value=4.9e-09  Score=109.07  Aligned_cols=182  Identities=16%  Similarity=0.226  Sum_probs=126.5

Q ss_pred             eEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH-hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcce
Q 013220           38 YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ-FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQH  116 (447)
Q Consensus        38 y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~-~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~  116 (447)
                      |.+ +..+-++.+..-.|..+.++..|.+.+++.... ......+-++-|+.+      .||+|++|++.+...    ..
T Consensus        15 Y~l-e~~~~~~~a~~~~~t~k~~~~~vsVF~~~~~~~~~~~~~~~A~k~lKtl------RHP~Il~yL~t~e~~----~~   83 (690)
T KOG1243|consen   15 YDL-EETAFSSEALWPDGTRKADGGPVSVFVYKRSNGEVTELAKRAVKRLKTL------RHPNILSYLDTTEEE----GT   83 (690)
T ss_pred             ccc-ccccCCCcccccccceeccCCceEEEEEeCCCchhhHHHHHHHHHhhhc------cCchhhhhhhhhccc----Cc
Confidence            666 455555554332466667778888887665433 233455666777777      899999999999865    58


Q ss_pred             EEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCc
Q 013220          117 LCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL  196 (447)
Q Consensus       117 ~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~  196 (447)
                      +|+|.|.+... ...+..     +........+.||+.||.|||.+++++|++|.-+.++|                   
T Consensus        84 ~ylvTErV~Pl-~~~lk~-----l~~~~v~~Gl~qIl~AL~FL~~d~~lvHgNv~~~SVfV-------------------  138 (690)
T KOG1243|consen   84 LYLVTERVRPL-ETVLKE-----LGKEEVCLGLFQILAALSFLNDDCNLVHGNVCKDSVFV-------------------  138 (690)
T ss_pred             eEEEeeccccH-HHHHHH-----hHHHHHHHHHHHHHHHHHHHhccCCeeeccEeeeeEEE-------------------
Confidence            99999998331 112221     23567788899999999999976799999999999999                   


Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc--ccC-
Q 013220          197 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF--AEE-  273 (447)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~--~~~-  273 (447)
                                                                           ...+..||++|..+...+...  .+. 
T Consensus       139 -----------------------------------------------------n~~GeWkLggle~v~~~~~~~~~~~~~  165 (690)
T KOG1243|consen  139 -----------------------------------------------------NESGEWKLGGLELVSKASGFNAPAKSL  165 (690)
T ss_pred             -----------------------------------------------------cCCCcEEEeeeEEEeccccCCcccccc
Confidence                                                                 457889999998876544322  111 


Q ss_pred             CCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCC
Q 013220          274 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGD  310 (447)
Q Consensus       274 ~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~  310 (447)
                      .---.|..|+.+...  +...|.|-|||++++++.|.
T Consensus       166 ~~~~s~~~P~~~~~s--~~s~D~~~Lg~li~el~ng~  200 (690)
T KOG1243|consen  166 YLIESFDDPEEIDPS--EWSIDSWGLGCLIEELFNGS  200 (690)
T ss_pred             hhhhcccChhhcCcc--ccchhhhhHHHHHHHHhCcc
Confidence            112345566554322  25679999999999999993

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.87  E-value=3.2e-08  Score=88.21  Aligned_cols=127  Identities=20%  Similarity=0.133  Sum_probs=87.4

Q ss_pred             EEEeecccCceEEEEEEeCCCCeEEEEEE-e-c-------hhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           40 AQRKLGWGQFSIVWLAYDTRTSSYVALKI-Q-K-------SAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        40 l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~-~-~-------~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      ..+.|-+|+-+.|+++.+  .|+..+||. + |       ...........|+++|.++....+ ..|-+     +|.+.
T Consensus        11 ~l~likQGAEArv~~~~~--~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI-~~P~l-----~~~D~   82 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSF--SGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGI-PAPRL-----IFIDT   82 (229)
T ss_pred             cceeeeccceeeEeeecc--CCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCC-CCceE-----EEEec
Confidence            556778999999999954  577888883 1 1       122345677889999988854321 22222     22222


Q ss_pred             CCCcceEEEEEecccc--cHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeee
Q 013220          111 GPNGQHLCMVLEFLGD--SLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVS  179 (447)
Q Consensus       111 ~~~~~~~~lvmE~~~~--~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~  179 (447)
                          ..-.|+|||+.+  ++.+++...-...........+++++=+.+..||.+ +|||||+...||++..
T Consensus        83 ----~~~~i~ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~n-diiHGDLTTSNill~~  148 (229)
T KOG3087|consen   83 ----YGGQIYMEFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHDN-DIIHGDLTTSNILLRS  148 (229)
T ss_pred             ----CCCeEEEEeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhhC-CeecccccccceEEec
Confidence                235689999955  677766543333344444478899999999999997 9999999999999954

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.76  E-value=1.7e-09  Score=112.86  Aligned_cols=154  Identities=24%  Similarity=0.359  Sum_probs=108.7

Q ss_pred             HHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhh
Q 013220          152 ILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISI  231 (447)
Q Consensus       152 il~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (447)
                      +..|+.|+|...++||++|.|++|.+.                                                     
T Consensus       108 v~dgl~flh~sAk~VH~ni~p~~i~~n-----------------------------------------------------  134 (700)
T KOG2137|consen  108 VADGLAFLHRSAKVVHGNIQPEAIVVN-----------------------------------------------------  134 (700)
T ss_pred             ccchhhhhccCcceeecccchhheeec-----------------------------------------------------
Confidence            347999999988999999999999993                                                     


Q ss_pred             hhcccCCCCCCCCCccCCCcccceeEeecCcccccccc----ccc--------CCCCCCccChHHhhcCCCCccchhHhH
Q 013220          232 RRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAE--------EIQTRQYRAPEVILRAGYSFSVDMWSF  299 (447)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~----~~~--------~~gt~~y~aPE~l~~~~~~~~~DiwSl  299 (447)
                                         ..+..|++.|+++.....+    +..        .....-|.|||++....-++++|++|+
T Consensus       135 -------------------a~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~~~~~~~~sd~fSl  195 (700)
T KOG2137|consen  135 -------------------ANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLLGTTNTPASDVFSL  195 (700)
T ss_pred             -------------------cCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhhccccccccccceee
Confidence                               3556788888877543321    111        123567999999998777899999999


Q ss_pred             HHHHHHHh-hCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhc
Q 013220          300 ACTAFELA-TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKY  378 (447)
Q Consensus       300 Gvil~~l~-~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (447)
                      ||++|.+. .|+..+.......++       ....                        .           ..  -....
T Consensus       196 G~li~~i~~~gk~i~~a~~~~~~~-------~~~~------------------------~-----------~~--~~~~~  231 (700)
T KOG2137|consen  196 GVLIYTIYNGGKSIIAANGGLLSY-------SFSR------------------------N-----------LL--NAGAF  231 (700)
T ss_pred             eeEEEEEecCCcchhhccCCcchh-------hhhh------------------------c-----------cc--ccccc
Confidence            99999999 555555433111000       0000                        0           00  00011


Q ss_pred             CCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          379 RFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       379 ~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                      .+..+++.++++-|.++|..++..||++.+++..|||++..-.
T Consensus       232 ~~s~~~p~el~~~l~k~l~~~~~~rp~~~~l~~~~ff~D~~~~  274 (700)
T KOG2137|consen  232 GYSNNLPSELRESLKKLLNGDSAVRPTLDLLLSIPFFSDPGLK  274 (700)
T ss_pred             cccccCcHHHHHHHHHHhcCCcccCcchhhhhcccccCCchhh
Confidence            2345678899999999999999999999999999999986543

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.73  E-value=5.9e-08  Score=90.22  Aligned_cols=111  Identities=21%  Similarity=0.195  Sum_probs=71.9

Q ss_pred             EeecccCceEEEEEEeCCCCeEEEEEEechhHH--hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEE
Q 013220           42 RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ--FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCM  119 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~--~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~l  119 (447)
                      +.|+.|.++.||++.... ++.+++|+......  ....+..|.++++.+...    +..+.+++....... .....++
T Consensus         4 ~~l~~G~~n~~~~v~~~~-g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~----~~~vp~~~~~~~~~~-~~~~~~~   77 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGG-GRRLVLRRPPPGALLPSAHDVAREYRVLRALAGT----GVPVPKVLALCEDPS-VLGTPFY   77 (223)
T ss_pred             eecCCCccceEEEEEecC-CcceEEEeCCCcccCcccccHHHHHHHHHHhhCC----CCCCCCEEEECCCCC-ccCCceE
Confidence            568999999999997643 57899998765432  355788999999999653    122344444433211 1125689


Q ss_pred             EEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh
Q 013220          120 VLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR  161 (447)
Q Consensus       120 vmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~  161 (447)
                      ||||+ |.++......   ..++......++.+++.+|+.||+
T Consensus        78 v~e~i~G~~l~~~~~~---~~~~~~~~~~i~~~i~~~l~~lH~  117 (223)
T cd05154          78 VMERVDGRVLRDRLLR---PELSPEERRALARALADTLAALHS  117 (223)
T ss_pred             EEEEeCCEecCCCCCC---CCCCHHHHHHHHHHHHHHHHHHhC
Confidence            99999 6555443321   125556666667777777777774

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.61  E-value=4.2e-07  Score=81.41  Aligned_cols=115  Identities=17%  Similarity=0.206  Sum_probs=77.2

Q ss_pred             eecccCceEEEEEEeCCCCeEEEEEE-ech----h----HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           43 KLGWGQFSIVWLAYDTRTSSYVALKI-QKS----A----AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        43 ~lG~G~~g~Vy~a~~~~~~~~vaiK~-~~~----~----~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      .+++|+-+.+|.+.+.  +..+++|. +++    .    ..-.....+|.+++..+.... ...|-   ++++..     
T Consensus         3 ~i~~GAEa~i~~~~~~--g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~G-V~~P~---v~dvD~-----   71 (204)
T COG3642           3 LIKQGAEAIIYLTDFL--GLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAG-VPVPI---VYDVDP-----   71 (204)
T ss_pred             hhhCCcceeEEeeecc--CcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCe---EEEEcC-----
Confidence            5688999999999553  44466773 211    1    122346778999999986432 12232   233322     


Q ss_pred             cceEEEEEecccc-cHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeee
Q 013220          114 GQHLCMVLEFLGD-SLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVS  179 (447)
Q Consensus       114 ~~~~~lvmE~~~~-~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~  179 (447)
                       +...|+|||.+| .|.+.+...         ...++..+=..+.-||.. ||+|+|+.+.||++..
T Consensus        72 -~~~~I~me~I~G~~lkd~l~~~---------~~~~~r~vG~~vg~lH~~-givHGDLTtsNiIl~~  127 (204)
T COG3642          72 -DNGLIVMEYIEGELLKDALEEA---------RPDLLREVGRLVGKLHKA-GIVHGDLTTSNIILSG  127 (204)
T ss_pred             -CCCEEEEEEeCChhHHHHHHhc---------chHHHHHHHHHHHHHHhc-CeecCCCccceEEEeC
Confidence             457799999954 555566533         145677777788999997 9999999999999943

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.55  E-value=4e-07  Score=83.12  Aligned_cols=111  Identities=28%  Similarity=0.327  Sum_probs=66.2

Q ss_pred             EEEEEEeCCCCeEEEEEEechhH---------------------------HhHHHHHHHHHHHHHhhcCCCCCcceeeee
Q 013220           51 IVWLAYDTRTSSYVALKIQKSAA---------------------------QFAQAALHEIEVLSAVADGDPSNEKCVIRL  103 (447)
Q Consensus        51 ~Vy~a~~~~~~~~vaiK~~~~~~---------------------------~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~  103 (447)
                      .||.|.. ..+..+|+|+.+...                           .......+|.+.|..+....    -++.+.
T Consensus         1 ~Vy~~~~-~~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~G----v~vP~p   75 (188)
T PF01163_consen    1 DVYHAID-PDGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAG----VPVPKP   75 (188)
T ss_dssp             EEEEEEE-CTTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-----SS--E
T ss_pred             CEEEEEC-CCCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCC----ccCCcE
Confidence            3888876 456789999844210                           11224667999999986432    224444


Q ss_pred             cccccccCCCcceEEEEEeccc--ccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHH-HHhhCCcccccCCCCCeEee
Q 013220          104 IDHFKHAGPNGQHLCMVLEFLG--DSLLRLIKYSRYKGLELNKVREICKYILTGLDY-LHRELGIIHTDLKPENILLV  178 (447)
Q Consensus       104 ~~~~~~~~~~~~~~~lvmE~~~--~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~-lH~~~gIiH~Dikp~Nill~  178 (447)
                      +.+.        .-+|||||++  |.....+....   ++.+....++.+++..+.. +|.. ||+|||+.+.||++.
T Consensus        76 ~~~~--------~~~ivME~I~~~G~~~~~l~~~~---~~~~~~~~~~~~il~~~~~~~~~~-givHGDLs~~NIlv~  141 (188)
T PF01163_consen   76 YDYN--------RNVIVMEYIGEDGVPLPRLKDVD---LSPEEPKELLEEILEEIIKMLHKA-GIVHGDLSEYNILVD  141 (188)
T ss_dssp             EEEE--------TTEEEEE--EETTEEGGCHHHCG---GGGSTHHHHHHHHHHHHHHHHHCT-TEEESS-STTSEEEE
T ss_pred             EEEe--------CCEEEEEecCCCccchhhHHhcc---ccchhHHHHHHHHHHHHHHHHHhc-CceecCCChhhEEee
Confidence            4332        2469999996  54333232211   2234567788888886665 5674 999999999999994

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.52  E-value=1.6e-06  Score=83.77  Aligned_cols=96  Identities=18%  Similarity=0.109  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHhhcCCCCCcceeeeeccccccc-CCCcceEEEEEecccc--cHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 013220           78 AALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA-GPNGQHLCMVLEFLGD--SLLRLIKYSRYKGLELNKVREICKYILT  154 (447)
Q Consensus        78 ~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~-~~~~~~~~lvmE~~~~--~L~~~~~~~~~~~l~~~~~~~i~~qil~  154 (447)
                      .+.+|.+.+..+....+ ..|.+|-+   .... .+.....++|||++++  +|.+++........+......++.++..
T Consensus        74 ~a~rE~~~l~~L~~~GI-ptP~pVa~---~e~~~~~~~~~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~  149 (268)
T PRK15123         74 GADREWRAIHRLHEVGV-DTMTGVAF---GERGSNPATRTSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVAT  149 (268)
T ss_pred             HHHHHHHHHHHHHHcCC-CCCCeeEE---EEecCCCccceeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHH
Confidence            37789998888865432 33433333   2211 1113467899999944  5777765332334566777899999999


Q ss_pred             HHHHHHhhCCcccccCCCCCeEee
Q 013220          155 GLDYLHRELGIIHTDLKPENILLV  178 (447)
Q Consensus       155 aL~~lH~~~gIiH~Dikp~Nill~  178 (447)
                      .+..||.. ||+|+|+++.|||+.
T Consensus       150 ~i~~LH~~-Gi~HgDL~~~NiLl~  172 (268)
T PRK15123        150 MVRDMHAA-GINHRDCYICHFLLH  172 (268)
T ss_pred             HHHHHHHC-cCccCCCChhhEEEe
Confidence            99999997 999999999999994

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.44  E-value=6e-06  Score=84.14  Aligned_cols=123  Identities=13%  Similarity=0.100  Sum_probs=93.4

Q ss_pred             CceEEEEEEeCCCCeEEEEEEechhHHh-HHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEEEecc--
Q 013220           48 QFSIVWLAYDTRTSSYVALKIQKSAAQF-AQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--  124 (447)
Q Consensus        48 ~~g~Vy~a~~~~~~~~vaiK~~~~~~~~-~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~--  124 (447)
                      ...+.|+|....+|.-|++|.+..+... ......-++..+.+      .|.|||++.++|....-....+++|++|+  
T Consensus       288 ~~~Ttyk~~s~~DG~~YvLkRlhg~r~~~~nk~t~lve~wkkl------~h~NvV~frevf~t~tF~D~SlvlvYDYyP~  361 (655)
T KOG3741|consen  288 FSITTYKATSNVDGNAYVLKRLHGDRDQSTNKDTSLVEAWKKL------CHTNVVPFREVFLTYTFGDLSLVLVYDYYPS  361 (655)
T ss_pred             ccceeEeeeeccCCceeeeeeeccccccCcccchHHHHHHHHh------ccCceeehhhhhhhhccCcceEEEEEecCCC
Confidence            3468999999999999999988433221 11223345677777      78899999999984433456899999999  


Q ss_pred             cccHHHHHHhhc-------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEe
Q 013220          125 GDSLLRLIKYSR-------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL  177 (447)
Q Consensus       125 ~~~L~~~~~~~~-------------~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill  177 (447)
                      .++|.+..-...             ....++..+..++.|+..||.++|+. |+.-+-+.|.+|++
T Consensus       362 s~TL~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHss-GLAck~L~~~kIlv  426 (655)
T KOG3741|consen  362 SPTLYDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSS-GLACKTLDLKKILV  426 (655)
T ss_pred             CchHHHHHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhc-CceeecccHhHeEe
Confidence            456777552111             12366788999999999999999997 99999999999999

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.36  E-value=1.2e-05  Score=80.03  Aligned_cols=194  Identities=14%  Similarity=0.206  Sum_probs=120.4

Q ss_pred             EEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc----cCCCcc
Q 013220           40 AQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH----AGPNGQ  115 (447)
Q Consensus        40 l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~----~~~~~~  115 (447)
                      +.+.||+|+.+.+|-.-  .-+.. +.|++.......     ..+.+.++....  .||-+-. --+|-.    -...+.
T Consensus        15 ~gr~LgqGgea~ly~l~--e~~d~-VAKIYh~Pppa~-----~aqk~a~la~~p--~~p~~~~-rvaWPqa~L~G~~~~~   83 (637)
T COG4248          15 PGRPLGQGGEADLYTLG--EVRDQ-VAKIYHAPPPAA-----QAQKVAELAATP--DAPLLNY-RVAWPQATLHGGRRGK   83 (637)
T ss_pred             CCccccCCccceeeecc--hhhch-hheeecCCCchH-----HHHHHHHhccCC--CCcchhh-hhcccHHHhhCCCccc
Confidence            45678999999998652  12223 457665443211     112222232222  3433322 111111    111233


Q ss_pred             eEEEEEecc-cc-cHHHHHHh----hccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          116 HLCMVLEFL-GD-SLLRLIKY----SRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       116 ~~~lvmE~~-~~-~L~~~~~~----~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                      .+-++|+.+ |. -+..++.-    ..+...+...+.+..+.++.|.+-||.. |.+-||++++|+|+++          
T Consensus        84 ~iGflmP~v~g~~pI~~~y~p~tRRqs~P~~~w~fllrvaRnlA~aFA~lH~~-Gh~vGDVn~~~~lVsd----------  152 (637)
T COG4248          84 VIGFLMPKVSGKEPIHMIYSPATRRQSYPHCAWDFLLRVARNLASAFATLHEH-GHVVGDVNQNSFLVSD----------  152 (637)
T ss_pred             eeEEecccCCCccchhhhcCchhhcccCCccccHHHHHHHHHHHHHHHHHHhc-CCcccccCccceeeec----------
Confidence            478889988 33 24444321    1123366778899999999999999997 9999999999999954          


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc-cc-c
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC-RA-N  267 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~-~~-~  267 (447)
                                                                                    +..+.|+|-..-- .. +
T Consensus       153 --------------------------------------------------------------~~~V~LVdsDsfqi~~ng  170 (637)
T COG4248         153 --------------------------------------------------------------DSKVVLVDSDSFQINANG  170 (637)
T ss_pred             --------------------------------------------------------------CceEEEEcccceeeccCC
Confidence                                                                          4557776543211 11 1


Q ss_pred             cccccCCCCCCccChHHhh-----cCCCCccchhHhHHHHHHHHhhC-CCCCCCCC
Q 013220          268 KQFAEEIQTRQYRAPEVIL-----RAGYSFSVDMWSFACTAFELATG-DMLFAPKS  317 (447)
Q Consensus       268 ~~~~~~~gt~~y~aPE~l~-----~~~~~~~~DiwSlGvil~~l~~g-~~Pf~~~~  317 (447)
                      ......+|...|.+||.-.     +..-+...|.|.|||++++++.| +.||.+..
T Consensus       171 ~~~~cpVg~~eftPPElQ~~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~  226 (637)
T COG4248         171 TLHLCPVGVSEFTPPELQTLPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGIP  226 (637)
T ss_pred             ceEecccCccccCCHHHhccccccccCCCccccchhHHHHHHHHHhcCCCCCCccc
Confidence            2234558899999999854     23346789999999999998876 99998763

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.31  E-value=4.6e-06  Score=79.06  Aligned_cols=120  Identities=31%  Similarity=0.347  Sum_probs=80.2

Q ss_pred             eEEEEeecccCceEEEEEEeCCCCeEEEEEEech----------hH-------------HhHHHHHHHHHHHHHhhcCCC
Q 013220           38 YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKS----------AA-------------QFAQAALHEIEVLSAVADGDP   94 (447)
Q Consensus        38 y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~----------~~-------------~~~~~~~~E~~~l~~l~~~~~   94 (447)
                      +.+..+||.|--|.||.|.+. .+..+|+|+-+.          ..             .......+|.+.|++|.... 
T Consensus        93 e~iG~~IGvGKEsdVY~~~~~-~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G-  170 (304)
T COG0478          93 EAIGTKIGVGKESDVYVAIDP-KGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEG-  170 (304)
T ss_pred             HhhccccccCccceEEEEECC-CCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcC-
Confidence            568889999999999999875 678899997221          00             12235677999999995320 


Q ss_pred             CCcceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCC
Q 013220           95 SNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPE  173 (447)
Q Consensus        95 ~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~  173 (447)
                         -.|.+-++        -+.-++|||+. |-.|..+-       ++.+....++..|+.-+.-.-. .||||+|+++-
T Consensus       171 ---~~VP~P~~--------~nRHaVvMe~ieG~eL~~~r-------~~~en~~~il~~il~~~~~~~~-~GiVHGDlSef  231 (304)
T COG0478         171 ---VKVPKPIA--------WNRHAVVMEYIEGVELYRLR-------LDVENPDEILDKILEEVRKAYR-RGIVHGDLSEF  231 (304)
T ss_pred             ---CCCCCccc--------cccceeeeehcccceeeccc-------CcccCHHHHHHHHHHHHHHHHH-cCccccCCchh
Confidence               12222222        24567999999 54454332       1234445566666666665555 49999999999


Q ss_pred             CeEee
Q 013220          174 NILLV  178 (447)
Q Consensus       174 Nill~  178 (447)
                      ||+++
T Consensus       232 NIlV~  236 (304)
T COG0478         232 NILVT  236 (304)
T ss_pred             eEEEe
Confidence            99993

>PRK09902 hypothetical protein; Provisional

Probab=98.29  E-value=1.7e-05  Score=73.20  Aligned_cols=127  Identities=9%  Similarity=-0.030  Sum_probs=86.5

Q ss_pred             cccCceEEEEEEeCCCCeEEEEEEec-hh------HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceE
Q 013220           45 GWGQFSIVWLAYDTRTSSYVALKIQK-SA------AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHL  117 (447)
Q Consensus        45 G~G~~g~Vy~a~~~~~~~~vaiK~~~-~~------~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~  117 (447)
                      |.||-|-|++....  |+.|=+|... .-      ......+.+|+..|+.+...... -|-++ +.+.  ...+.....
T Consensus        27 ~rgG~SgV~r~~~~--g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvP-VP~pv-f~~~--~k~~~~~rA  100 (216)
T PRK09902         27 RRNGMSGVQCVERN--GKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVI-VPKIV-FGEA--VKIEGEWRA  100 (216)
T ss_pred             CCCCcceEEEEEeC--CcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCC-CCccc-eeee--eccCCceEE
Confidence            45777777776432  3356677543 10      22345789999999999765432 33333 2221  222234578


Q ss_pred             EEEEeccc--ccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEee
Q 013220          118 CMVLEFLG--DSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV  178 (447)
Q Consensus       118 ~lvmE~~~--~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~  178 (447)
                      +||+|-++  .+|.+.+........+......+..++..+++-||+. |+.|+|+.+.||++.
T Consensus       101 ~LVTe~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH~~-Gv~Hgdly~khIll~  162 (216)
T PRK09902        101 LLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSV-NRQHGCCYVRHIYVK  162 (216)
T ss_pred             EEEEEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHC-CCcCCCCCHhheeec
Confidence            99999886  5787776543333456777788999999999999996 999999999999994

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.18  E-value=1.3e-05  Score=74.36  Aligned_cols=96  Identities=24%  Similarity=0.293  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEEEecc-cc-cHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 013220           77 QAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GD-SLLRLIKYSRYKGLELNKVREICKYILT  154 (447)
Q Consensus        77 ~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~-~L~~~~~~~~~~~l~~~~~~~i~~qil~  154 (447)
                      ....+|.+.+..+....+ ..|..+-+   ...........++|+|++ +. +|.+++.....  .+......++.++..
T Consensus        56 ~ra~~E~~~~~~L~~~Gi-~tP~pva~---~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~~--~~~~~~~~ll~~l~~  129 (206)
T PF06293_consen   56 SRAKREWRNLQRLREAGI-PTPEPVAY---GERRKGGGYRSYLITEALPGAQDLRDLLQQWEQ--LDPSQRRELLRALAR  129 (206)
T ss_pred             hHHHHHHHHHHHHHHcCC-CCCcEEEE---EEEcCCCceeEEEEEEeCCCcccHHHHHHhhcc--cchhhHHHHHHHHHH
Confidence            457788888888765332 33444333   332222225679999999 43 57777764322  566677899999999


Q ss_pred             HHHHHHhhCCcccccCCCCCeEeee
Q 013220          155 GLDYLHRELGIIHTDLKPENILLVS  179 (447)
Q Consensus       155 aL~~lH~~~gIiH~Dikp~Nill~~  179 (447)
                      .++-||.. ||+|+|+++.|||+..
T Consensus       130 ~i~~lH~~-gi~H~Dl~~~NILv~~  153 (206)
T PF06293_consen  130 LIAKLHDA-GIYHGDLNPSNILVDP  153 (206)
T ss_pred             HHHHHHHC-cCCCCCCCcccEEEeC
Confidence            99999996 9999999999999954

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=98.16  E-value=2.6e-05  Score=73.26  Aligned_cols=122  Identities=27%  Similarity=0.316  Sum_probs=77.7

Q ss_pred             EEeecccCceEEEEEEeCCCCeEEEEEEechhHHhH------------------------H-HHHHHHHHHHHhhcCCCC
Q 013220           41 QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFA------------------------Q-AALHEIEVLSAVADGDPS   95 (447)
Q Consensus        41 ~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~------------------------~-~~~~E~~~l~~l~~~~~~   95 (447)
                      ...|.+|.-+.||+|.. ..+..+|+|+++.....-                        . =...|..-|+++...   
T Consensus        53 ~g~istGKEA~Vy~a~~-~~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~W~~kEf~NL~R~~eA---  128 (268)
T COG1718          53 VGCISTGKEANVYLAET-GDGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFAWARKEFRNLKRAYEA---  128 (268)
T ss_pred             EeeecCCcceEEEeecc-CCCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHHHHHHHHHHHHHHHHc---
Confidence            34667777789999965 457899999876432100                        0 123477777776432   


Q ss_pred             CcceeeeecccccccCCCcceEEEEEecccccHH--HHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCC
Q 013220           96 NEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLL--RLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPE  173 (447)
Q Consensus        96 ~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~~~~L~--~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~  173 (447)
                       +-.+.+=+.+        ..-.+||||+|....  -.++   .-++..+.+..+..+++..+.-|-...++||+|++.-
T Consensus       129 -GVrvP~Pi~~--------~~nVLvMEfIg~~g~pAP~Lk---Dv~~e~~e~~~~~~~~v~~~~~l~~~a~LVHgDLSEy  196 (268)
T COG1718         129 -GVRVPEPIAF--------RNNVLVMEFIGDDGLPAPRLK---DVPLELEEAEGLYEDVVEYMRRLYKEAGLVHGDLSEY  196 (268)
T ss_pred             -CCCCCCceee--------cCCeEEEEeccCCCCCCCCcc---cCCcCchhHHHHHHHHHHHHHHHHHhcCcccccchhh
Confidence             1112222222        356799999965411  1111   1223444677888899999988877459999999999


Q ss_pred             CeEee
Q 013220          174 NILLV  178 (447)
Q Consensus       174 Nill~  178 (447)
                      |||+.
T Consensus       197 NiL~~  201 (268)
T COG1718         197 NILVH  201 (268)
T ss_pred             heEEE
Confidence            99994

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=98.02  E-value=4.8e-05  Score=70.62  Aligned_cols=135  Identities=14%  Similarity=0.164  Sum_probs=80.3

Q ss_pred             ccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHH----------HHHHHHHHHHHhhcCCCCCc
Q 013220           28 RVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQ----------AALHEIEVLSAVADGDPSNE   97 (447)
Q Consensus        28 ~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~----------~~~~E~~~l~~l~~~~~~~~   97 (447)
                      .+++-+-.++|...+.+-......|.+-.  -.+..+++|.+.....-.+          ...+++..+..+...   +-
T Consensus        23 ~l~~~i~~~~~~~~kv~k~~~r~~ValIe--i~~~kyIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~---g~   97 (229)
T PF06176_consen   23 ELGEKILDNNYKIIKVFKNTKRNYVALIE--IDGKKYILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNE---GF   97 (229)
T ss_pred             HHHHHHHhCCceEEEeecCCCccEEEEEE--ECCcEEEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHc---Cc
Confidence            34444445899999999988888888774  3568899998765432111          122344434444221   11


Q ss_pred             ceeeeecccccccC-CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCe
Q 013220           98 KCVIRLIDHFKHAG-PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENI  175 (447)
Q Consensus        98 ~~Iv~~~~~~~~~~-~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Ni  175 (447)
                      .....++.+-.... .-....+++|||+ |..|.+...      +++    .+...+.+++.-+|+. |+.|+|.+|.|+
T Consensus        98 ~~~~~~yl~~ekk~~~~~~~~~ll~EYIeG~~l~d~~~------i~e----~~~~ki~~~ikqlH~~-G~~HGD~hpgNF  166 (229)
T PF06176_consen   98 TEPADPYLAAEKKIFRYTSSYVLLMEYIEGVELNDIED------IDE----DLAEKIVEAIKQLHKH-GFYHGDPHPGNF  166 (229)
T ss_pred             cccccceeeeeeeeccceeEEEEEEEEecCeecccchh------cCH----HHHHHHHHHHHHHHHc-CCccCCCCcCcE
Confidence            12222111111110 0113567899999 656654321      222    2445677789999996 999999999999


Q ss_pred             Eee
Q 013220          176 LLV  178 (447)
Q Consensus       176 ll~  178 (447)
                      ++.
T Consensus       167 lv~  169 (229)
T PF06176_consen  167 LVS  169 (229)
T ss_pred             EEE
Confidence            994

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=97.88  E-value=0.00033  Score=65.12  Aligned_cols=82  Identities=20%  Similarity=0.194  Sum_probs=55.6

Q ss_pred             EEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEE
Q 013220           41 QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMV  120 (447)
Q Consensus        41 ~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lv  120 (447)
                      ++.|+.|..+.||+.....  ..+++|+.... .....+..|.++++.+..... .   +.+++...... ......+++
T Consensus         2 i~~l~~G~~n~~~~v~~~~--~~~vlK~~~~~-~~~~~~~~e~~~~~~l~~~~~-p---vP~~~~~~~~~-~~~~~~~~~   73 (239)
T PF01636_consen    2 IRPLSGGFSNRVYRVTTDD--GRYVLKFYRPP-DAAERLRREAAVLRQLAEHGI-P---VPRVLAFDTSD-EFNGFPYLL   73 (239)
T ss_dssp             EEEEEESSSSEEEEEEETT--SEEEEEEESSH-HHHHHHHHHHHHHHHHHHTTS-B---S--EEEEEEET-EETSEEEEE
T ss_pred             CccCCCCCeeeEEEEEECC--cEEEEEEeCCC-CCHHHHHHHHHHHHHHHhcCC-C---CceEEeecccc-cccccceEE
Confidence            4678999999999998765  48999987766 556778899999999975432 2   33334322111 122358999


Q ss_pred             Eecc-cccHHH
Q 013220          121 LEFL-GDSLLR  130 (447)
Q Consensus       121 mE~~-~~~L~~  130 (447)
                      |+++ |..+..
T Consensus        74 ~~~i~g~~~~~   84 (239)
T PF01636_consen   74 MEYIPGRPLDD   84 (239)
T ss_dssp             EEEESSEEHHH
T ss_pred             EEEeccccccc
Confidence            9999 555555

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=97.86  E-value=0.00013  Score=76.30  Aligned_cols=128  Identities=16%  Similarity=0.160  Sum_probs=71.8

Q ss_pred             EEeecccCceEEEEEEeCCCCeEEEEEEechhHH--------------------------------hHH------HHHHH
Q 013220           41 QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ--------------------------------FAQ------AALHE   82 (447)
Q Consensus        41 ~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~--------------------------------~~~------~~~~E   82 (447)
                      .+.||.-+.|.|++|+... |+.||||+.+..-.                                ...      +|..|
T Consensus       166 ~~piaaASlaQVhrA~L~~-G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~E  244 (538)
T KOG1235|consen  166 EEPIAAASLAQVHRARLKN-GEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFTKE  244 (538)
T ss_pred             cchhhhcchhheEEEEecC-CCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchHHH
Confidence            3569999999999998765 99999999553210                                011      23334


Q ss_pred             HHHHHHhh----cCCCCCcceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 013220           83 IEVLSAVA----DGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLD  157 (447)
Q Consensus        83 ~~~l~~l~----~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~  157 (447)
                      .+-..++.    +.+...--.|.+++-.+.      ....++|||| |..+.++- .-...+++...+.   ..+.++..
T Consensus       245 A~Nae~~~~~f~~~~~~~~V~VP~Vy~~~s------t~RVLtME~~~G~~i~Dl~-~i~~~gi~~~~i~---~~l~~~~~  314 (538)
T KOG1235|consen  245 AKNAERFRENFKDFSLLTYVLVPKVYWDLS------TKRVLTMEYVDGIKINDLD-AIDKRGISPHDIL---NKLVEAYL  314 (538)
T ss_pred             HHhHHHHHHHHHhcccccceeCCeehhhcC------cceEEEEEecCCccCCCHH-HHHHcCCCHHHHH---HHHHHHHH
Confidence            44333332    222111222444444433      2588999999 54443321 1122346665443   33333322


Q ss_pred             HHHhhCCcccccCCCCCeEeee
Q 013220          158 YLHRELGIIHTDLKPENILLVS  179 (447)
Q Consensus       158 ~lH~~~gIiH~Dikp~Nill~~  179 (447)
                      .+=-..|.+|.|-+|.||++..
T Consensus       315 ~qIf~~GffHaDPHPGNilv~~  336 (538)
T KOG1235|consen  315 EQIFKTGFFHADPHPGNILVRP  336 (538)
T ss_pred             HHHHhcCCccCCCCCCcEEEec
Confidence            2111139999999999999954

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=97.83  E-value=0.00012  Score=76.87  Aligned_cols=126  Identities=17%  Similarity=0.259  Sum_probs=72.0

Q ss_pred             EeecccCceEEEEEEeCCCCeEEEEEEechhH-----------------------------------HhHH------HHH
Q 013220           42 RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-----------------------------------QFAQ------AAL   80 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-----------------------------------~~~~------~~~   80 (447)
                      +.|+.++=|.||+|+... |+.||||++...-                                   ...+      ++.
T Consensus       131 ~PiAsASIaQVH~A~L~s-G~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~  209 (517)
T COG0661         131 EPIASASIAQVHRAVLKS-GEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYR  209 (517)
T ss_pred             CchhhhhHhhheeEEecC-CCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHhCHH
Confidence            568999999999998754 9999999954211                                   0111      234


Q ss_pred             HHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH
Q 013220           81 HEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYL  159 (447)
Q Consensus        81 ~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~l  159 (447)
                      +|..-+..+..+-. +.+.|. +=.+|.+.   ...-.++|||+ |..+.+...... .+++.+.+.....++.-  .-+
T Consensus       210 ~EA~n~~~~~~nf~-~~~~v~-VP~V~we~---t~~~VLtmE~i~Gi~i~d~~~l~~-~g~d~k~ia~~~~~~f~--~q~  281 (517)
T COG0661         210 REAANAERFRENFK-DDPDVY-VPKVYWEY---TTRRVLTMEWIDGIKISDIAALKS-AGIDRKELAELLVRAFL--RQL  281 (517)
T ss_pred             HHHHHHHHHHHHcC-CCCCeE-eceeehhc---cCCcEEEEEeeCCEecccHHHHHh-cCCCHHHHHHHHHHHHH--HHH
Confidence            45555555543321 223322 12222221   13578999999 666666543222 45664444333222221  112


Q ss_pred             HhhCCcccccCCCCCeEe
Q 013220          160 HRELGIIHTDLKPENILL  177 (447)
Q Consensus       160 H~~~gIiH~Dikp~Nill  177 (447)
                      -.. |..|.|.+|.||++
T Consensus       282 ~~d-gffHaDpHpGNi~v  298 (517)
T COG0661         282 LRD-GFFHADPHPGNILV  298 (517)
T ss_pred             Hhc-CccccCCCccceEE
Confidence            224 99999999999999

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=97.73  E-value=0.00053  Score=64.63  Aligned_cols=72  Identities=14%  Similarity=0.110  Sum_probs=46.9

Q ss_pred             EeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEEE
Q 013220           42 RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVL  121 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvm  121 (447)
                      ..||.|..+.||+.    .+..+++|+..... ......+|.++++.+.... ...|.++   .+...    .....+||
T Consensus         7 ~~i~~G~t~~~y~~----~~~~~VlR~~~~~~-~~~~i~~E~~~l~~l~~~g-lpvP~~~---~~~~~----~~~~glv~   73 (226)
T TIGR02172         7 TQTGEGGNGESYTH----KTGKWMLKLYNPGF-DKETIKREFDASRKVFSLG-IPTPHPF---DLVED----GGRLGLIY   73 (226)
T ss_pred             eeecCCCCcceeEe----cCCCEEEEeCCCCC-CHHHHHHHHHHHHHHHHcC-CCCCceE---EEEec----CCeeeeee
Confidence            57899999999984    24467889876533 2345788999999986432 1233333   33222    23467899


Q ss_pred             ecccc
Q 013220          122 EFLGD  126 (447)
Q Consensus       122 E~~~~  126 (447)
                      |++.|
T Consensus        74 e~i~G   78 (226)
T TIGR02172        74 ELIVG   78 (226)
T ss_pred             eecCC
Confidence            99933

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=97.69  E-value=0.00048  Score=63.26  Aligned_cols=121  Identities=20%  Similarity=0.249  Sum_probs=82.7

Q ss_pred             CceEEEEeecccCc-eEEEEEEeCCCCeEEEEEEech---h------------H-------HhHHHHHHHHHHHHHhhcC
Q 013220           36 GRYIAQRKLGWGQF-SIVWLAYDTRTSSYVALKIQKS---A------------A-------QFAQAALHEIEVLSAVADG   92 (447)
Q Consensus        36 ~~y~l~~~lG~G~~-g~Vy~a~~~~~~~~vaiK~~~~---~------------~-------~~~~~~~~E~~~l~~l~~~   92 (447)
                      ..++..+.||.|.. |.||+++.  .|+.||+|+.+.   .            .       .....|..|.+...+|...
T Consensus        37 ~~I~flefLg~g~~~~~V~kv~I--~g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfgRLke~  114 (207)
T PF13095_consen   37 DDIEFLEFLGHGSHDGYVFKVEI--DGRIYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFGRLKEA  114 (207)
T ss_pred             CcEeeeeecCCCCceeEEEEEEE--CCeEEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhHHHHhc
Confidence            78999999999999 99999965  577999998321   0            0       2234678899998888754


Q ss_pred             CCCCccee--eeecccccccC--------------CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 013220           93 DPSNEKCV--IRLIDHFKHAG--------------PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGL  156 (447)
Q Consensus        93 ~~~~~~~I--v~~~~~~~~~~--------------~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL  156 (447)
                         ++.++  ++.++++.-..              .......||.||....-          .++.    .-+.+|+.-+
T Consensus       115 ---~~e~~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~----------~~~~----~~~~~~~~dl  177 (207)
T PF13095_consen  115 ---GREGLWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDP----------PLQI----RDIPQMLRDL  177 (207)
T ss_pred             ---cccCceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCcc----------ccch----hHHHHHHHHH
Confidence               33334  77777653321              11124577888762221          1222    3356677788


Q ss_pred             HHHHhhCCcccccCCCCCeE
Q 013220          157 DYLHRELGIIHTDLKPENIL  176 (447)
Q Consensus       157 ~~lH~~~gIiH~Dikp~Nil  176 (447)
                      ..+|. .||+-+|+++.|..
T Consensus       178 ~~~~k-~gI~~~Dv~~~ny~  196 (207)
T PF13095_consen  178 KILHK-LGIVPRDVKPRNYR  196 (207)
T ss_pred             HHHHH-CCeeeccCcccccc
Confidence            99999 59999999998865

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=97.69  E-value=6.3e-06  Score=85.90  Aligned_cols=198  Identities=20%  Similarity=0.148  Sum_probs=133.2

Q ss_pred             CCCccccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcce-
Q 013220           21 KGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKC-   99 (447)
Q Consensus        21 ~~~~~~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~-   99 (447)
                      +++|.|..+-|--  .-|...+.+++|+++.+++.+...++..+ .++....    ....-++++|..+      +||| 
T Consensus       229 kS~~qpp~lkDk~--kws~~fh~fvK~altknpKkRptaeklL~-h~fvs~~----l~~rl~~eLLdK~------n~P~~  295 (829)
T KOG0576|consen  229 KSGFQPPTLKDKT--KWSEFFHNFVKGALTKNPKKRPTAEKLLQ-HPFVSQT----LSRRLAIELLDKV------NNPNP  295 (829)
T ss_pred             ccCCCCCcccCCc--cchHHHHHHHHHHhcCCCccCCChhhhee-ceeeccc----hhhHHHHHHHHHc------cCCCC
Confidence            4577777766543  34666677899999999999877666555 5654433    2345678899998      6777 


Q ss_pred             eeeecccccccCCCcceEEEEEeccccc--HHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEe
Q 013220          100 VIRLIDHFKHAGPNGQHLCMVLEFLGDS--LLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL  177 (447)
Q Consensus       100 Iv~~~~~~~~~~~~~~~~~lvmE~~~~~--L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill  177 (447)
                      .+.+++-+.    ..++.++.|+++++.  ....+.... ..+..-+...+++.-..+++++|+. -=+|+|    ||+.
T Consensus       296 ~v~~~~d~~----~E~~~~i~~~i~s~~rs~~~~~~~se-~~~~~~~~~~~~r~et~~l~~l~~~-~~~~~d----~~l~  365 (829)
T KOG0576|consen  296 VVRYLEDYD----GEDYLWIPMRICSTGRSSALEMTVSE-IALEQYQFAYPLRKETRPLAELHSS-YKVHRD----NILG  365 (829)
T ss_pred             cccccccCC----cccccchhhhhhcCCccccccCChhh-Hhhhhhhhhhhhhhhcccccccccc-cccCcc----cccc
Confidence            555554433    457999999999332  211111000 1133334455566667788999984 457777    7765


Q ss_pred             eecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeE
Q 013220          178 VSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKV  257 (447)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL  257 (447)
                      +                                                                         ....++
T Consensus       366 s-------------------------------------------------------------------------~~~~~~  372 (829)
T KOG0576|consen  366 S-------------------------------------------------------------------------EEEVKL  372 (829)
T ss_pred             c-------------------------------------------------------------------------cccccc
Confidence            2                                                                         234677


Q ss_pred             eecCcccccccc--cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCC
Q 013220          258 VDFGNACRANKQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFA  314 (447)
Q Consensus       258 ~Dfg~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~  314 (447)
                      .||+.....+..  .....+++.++|||+..+..+..+.|.|++|+-..++.-|-.|-.
T Consensus       373 ~~~~v~~~L~~~~~~~t~~~~~~~~~pev~~~~~~~~~p~~~~~~~~~~~~ap~~pPr~  431 (829)
T KOG0576|consen  373 LDFAVPPQLTRTMKPRTAIGTPEPLAPEVIQENTIDGCPDSGSLAVSAIQMAPGLPPRS  431 (829)
T ss_pred             ccccCCcccCcccccccCCCCCCCCCchhhcccccccCCCccCCCcchhhcCCCCCCCC
Confidence            888877554433  345578999999999999999999999999987777777766543

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=97.63  E-value=0.00023  Score=79.05  Aligned_cols=207  Identities=19%  Similarity=0.239  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 013220           78 AALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGL  156 (447)
Q Consensus        78 ~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL  156 (447)
                      ....|++.+..+      .|+|++.++.+-....-.+-.+.+..++| ..++.+.+..-  ..++....+.+..+.+.|+
T Consensus       228 ~~E~e~~~l~k~------~~~n~~~~~~~~le~~~~g~~~~v~~~~~s~~~~~~~~q~v--~~i~~~~~r~~~~~~~~GL  299 (1351)
T KOG1035|consen  228 TTEIELESLSKI------AHDNLGGYFVYGLERLFRGIVLDVLQEICSKVELRSLLQSV--GSIPLETLRILHQKLLEGL  299 (1351)
T ss_pred             HHHHHHHHHHhh------ccccccceeEEeehhhcchHHHHHHHhhcCccchHHHHhhc--cccCHHHHHHHHHHHhhhH
Confidence            344456666666      67778777766443321222334455667 55666666543  2377888999999999999


Q ss_pred             HHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhccc
Q 013220          157 DYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASM  236 (447)
Q Consensus       157 ~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (447)
                      +++|+. .+       .+..+...-.                                                      
T Consensus       300 ~~~h~~-~l-------~~v~L~~s~~------------------------------------------------------  317 (1351)
T KOG1035|consen  300 AYLHSL-SL-------EHVVLSASSS------------------------------------------------------  317 (1351)
T ss_pred             HHHHHh-cc-------ceeEEecccc------------------------------------------------------
Confidence            999985 43       3344422100                                                      


Q ss_pred             CCCCCCCCCccCCCcccceeEe--ecCcccccccccccC--CCCCCccChHHhhcCCCCc--cchhHhHHHHHHHHhhCC
Q 013220          237 GGIELPKPERCLDGIDMRCKVV--DFGNACRANKQFAEE--IQTRQYRAPEVILRAGYSF--SVDMWSFACTAFELATGD  310 (447)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~kL~--Dfg~a~~~~~~~~~~--~gt~~y~aPE~l~~~~~~~--~~DiwSlGvil~~l~~g~  310 (447)
                             +..+. +..+.....  ||+.+.+........  ..+.-+.+||......+..  ..|+|.+|..+..+..|.
T Consensus       318 -------~~~~~-~~e~~~~~sl~~~~ss~~l~d~~~~~~~~~~~~~~~~e~~~~~~~~~~r~~dL~~lgll~~~~~~~~  389 (1351)
T KOG1035|consen  318 -------KESTV-DGEGVVAISLSDFDSSKPLPDNEKSFSDLLAEIRNADEDLKENTAKKSRLTDLWCLGLLLLQLSQGE  389 (1351)
T ss_pred             -------ccccc-CccceeecchhhhcccccCCCcccchhhcCccccccccccccccchhhhhhHHHHHHHHHhhhhhcC
Confidence                   00000 122233333  777766554433222  3456778888887766554  479999999999998875


Q ss_pred             CCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHH
Q 013220          311 MLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAE  390 (447)
Q Consensus       311 ~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  390 (447)
                      .+-....                    .+..+                                     .+........+
T Consensus       390 ~i~~~~~--------------------~~~~~-------------------------------------l~~~~~~~~~d  412 (1351)
T KOG1035|consen  390 DISEKSA--------------------VPVSL-------------------------------------LDVLSTSELLD  412 (1351)
T ss_pred             ccccccc--------------------chhhh-------------------------------------hccccchhhhh
Confidence            4321110                    00000                                     00111115678


Q ss_pred             HHhhccccCCCCCCChHHHhcCccccccc
Q 013220          391 FLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       391 ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                      ++.+|+.-++++|+.+.++|.|||.+.--
T Consensus       413 ~~~~~~~~~~~~Rl~~~~ll~~~f~~~~~  441 (1351)
T KOG1035|consen  413 ALPKCLDEDSEERLSALELLTHPFLRFPT  441 (1351)
T ss_pred             hhhhhcchhhhhccchhhhhhchhccccc
Confidence            99999999999999999999999998643

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=97.43  E-value=0.00074  Score=60.41  Aligned_cols=113  Identities=24%  Similarity=0.241  Sum_probs=71.7

Q ss_pred             EEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEE
Q 013220           39 IAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLC  118 (447)
Q Consensus        39 ~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~  118 (447)
                      ...+.||+|++|.||+|.+.  +..+|+|+...+.. ...+..|.++|+.+..-.  -.|-|   |.+        ....
T Consensus        25 ~v~~~L~KG~~s~Vyl~~~~--~~~~a~Kvrr~ds~-r~~l~kEakiLeil~g~~--~~p~v---y~y--------g~~~   88 (201)
T COG2112          25 RVEKELAKGTTSVVYLGEWR--GGEVALKVRRRDSP-RRNLEKEAKILEILAGEG--VTPEV---YFY--------GEDF   88 (201)
T ss_pred             hhhhhhhcccccEEEEeecc--CceEEEEEecCCcc-hhhHHHHHHHHHHhhhcC--CCceE---EEe--------chhh
Confidence            45677999999999999764  56899998887654 678899999999996433  12222   222        2234


Q ss_pred             EEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCC-CCCeEe
Q 013220          119 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLK-PENILL  177 (447)
Q Consensus       119 lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dik-p~Nill  177 (447)
                      +.|||. |-.|......     .+.    .-...++++---|-. +||-|+.+. |..+++
T Consensus        89 i~me~i~G~~L~~~~~~-----~~r----k~l~~vlE~a~~LD~-~GI~H~El~~~~k~vl  139 (201)
T COG2112          89 IRMEYIDGRPLGKLEIG-----GDR----KHLLRVLEKAYKLDR-LGIEHGELSRPWKNVL  139 (201)
T ss_pred             hhhhhhcCcchhhhhhc-----ccH----HHHHHHHHHHHHHHH-hccchhhhcCCceeEE
Confidence            559999 5566554321     122    223345555333444 599999886 344444

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=97.28  E-value=0.0023  Score=60.65  Aligned_cols=74  Identities=20%  Similarity=0.106  Sum_probs=47.2

Q ss_pred             eecccCc-eEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEEE
Q 013220           43 KLGWGQF-SIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVL  121 (447)
Q Consensus        43 ~lG~G~~-g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvm  121 (447)
                      .|..|.+ +.||+....  +..+.+|+.....  ......|+++++.+...     .-+.+++.....    ....++||
T Consensus         5 ~~~~g~~~~~v~~~~~~--~~~~~vk~~~~~~--~~~~~~E~~~l~~l~~~-----~~vP~v~~~~~~----~~~~~lv~   71 (244)
T cd05150           5 RVTEGQSGATVYRLDGK--NPGLYLKIAPSGP--TYELEREAERLRWLAGK-----LPVPEVIDYGSD----DGRAWLLT   71 (244)
T ss_pred             ecCCCCCcCeEEEEcCC--CCcEEEEecCCCc--ccchHHHHHHHHHHHhc-----CCCCeEEEEEec----CCccEEEE
Confidence            4445555 789999643  4678889766543  34577899999999743     224444444332    23578999


Q ss_pred             ecc-cccHH
Q 013220          122 EFL-GDSLL  129 (447)
Q Consensus       122 E~~-~~~L~  129 (447)
                      |++ |..+.
T Consensus        72 e~i~G~~l~   80 (244)
T cd05150          72 SAVPGVPAA   80 (244)
T ss_pred             EeeCCccHh
Confidence            999 55554

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>PLN02876 acyl-CoA dehydrogenase

Probab=97.25  E-value=0.0026  Score=71.24  Aligned_cols=83  Identities=19%  Similarity=0.186  Sum_probs=51.0

Q ss_pred             EEEeecccCceEEEEEEeCCCC--eEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           40 AQRKLGWGQFSIVWLAYDTRTS--SYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        40 l~~~lG~G~~g~Vy~a~~~~~~--~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      -.++++.|.++.+|+......+  ..+++|......  .....+.+|.++++.+....   ..-|.+++..+.+.... .
T Consensus        42 ~v~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~~~~~~~~rE~~~l~~L~~~~---~vpVP~v~~~~~d~~v~-G  117 (822)
T PLN02876         42 KVSQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLLQSAHAVEREYQVLRALGEHT---DVPVPKVYCLCTDASVI-G  117 (822)
T ss_pred             eEEEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccCccHHHHHHHHHHHHHHhhcC---CCCCCcEEEEecCCCcC-C
Confidence            4577899999999998765432  467777643321  22356889999999996211   11234444444332111 2


Q ss_pred             eEEEEEecccc
Q 013220          116 HLCMVLEFLGD  126 (447)
Q Consensus       116 ~~~lvmE~~~~  126 (447)
                      ..++||||+.+
T Consensus       118 ~~flVME~v~G  128 (822)
T PLN02876        118 TAFYIMEYLEG  128 (822)
T ss_pred             CceEEEEecCC
Confidence            46799999944

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=97.13  E-value=0.0047  Score=58.35  Aligned_cols=77  Identities=13%  Similarity=0.101  Sum_probs=45.0

Q ss_pred             EeecccCce-EEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEE
Q 013220           42 RKLGWGQFS-IVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMV  120 (447)
Q Consensus        42 ~~lG~G~~g-~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lv  120 (447)
                      +.|+.|+.. .||+..     ..+++|+..... ....+..|.++++.+........|.++   ...... ......+++
T Consensus         3 ~~~~~gG~~n~vy~~~-----~~~VlR~~~~~~-~~~~~~~E~~~l~~L~~~~~v~vP~~~---~~~~~~-~~~~~~~~l   72 (235)
T cd05155           3 EPVDSGGTDNATFRLG-----DDMSVRLPSAAG-YAGQVRKEQRWLPRLAPHLPLPVPEPL---GKGEPG-EGYPWPWSV   72 (235)
T ss_pred             eeccCCCcccceEEcC-----CceEEEcCCccc-hHHHHHHHHHHHHHHhccCCCCCCcee---ecCCCc-cCCCcceEE
Confidence            567766665 599762     357789766532 345788999999999643112333332   221111 011245789


Q ss_pred             Eecc-cccH
Q 013220          121 LEFL-GDSL  128 (447)
Q Consensus       121 mE~~-~~~L  128 (447)
                      |+++ |.++
T Consensus        73 ~~~i~G~~l   81 (235)
T cd05155          73 YRWLEGETA   81 (235)
T ss_pred             EEeecCCCC
Confidence            9998 5444

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=97.13  E-value=0.0035  Score=62.26  Aligned_cols=130  Identities=22%  Similarity=0.285  Sum_probs=84.2

Q ss_pred             cccCCce-EEEEeecccCceEEEEEEeCCCCeEEEEEEechh-------HHh-------------------HH-HHHHHH
Q 013220           32 LFNGGRY-IAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA-------AQF-------------------AQ-AALHEI   83 (447)
Q Consensus        32 ~~~~~~y-~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~-------~~~-------------------~~-~~~~E~   83 (447)
                      +++.|-+ .+..+|..|--+.||.|.. .+|..+|||+++..       ...                   .. =...|+
T Consensus       139 ll~RG~i~~inGCiSTGKEANVYHat~-~dG~~~AIKIYKTSILvFKDRdRYV~GEfRFRhgyck~NPRKMVk~WAEKE~  217 (520)
T KOG2270|consen  139 LLNRGVIVEINGCISTGKEANVYHATE-EDGSEFAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKHNPRKMVKTWAEKEM  217 (520)
T ss_pred             HHhcCeeeecccccccCccceeEeeec-CCCceEEEEEEeeeEEEEechhhhccceeeeecccccCCcHHHHHHHHHHHH
Confidence            4443333 4677889999999999974 45677999986531       111                   11 123488


Q ss_pred             HHHHHhhcCCCCCcceeeeecccccccCCCcceEEEEEecccccHH--HHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh
Q 013220           84 EVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLL--RLIKYSRYKGLELNKVREICKYILTGLDYLHR  161 (447)
Q Consensus        84 ~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~~~~L~--~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~  161 (447)
                      +-|.++....      |.-=-..+.      ..-.|||+|+|.+-.  ..+   ....++...+..+-.|++.-+.-|-+
T Consensus       218 RNLkRl~~aG------IP~PePIlL------k~hVLVM~FlGrdgw~aPkL---Kd~~ls~~ka~~~Y~~~v~~MR~lY~  282 (520)
T KOG2270|consen  218 RNLKRLNNAG------IPCPEPILL------KNHVLVMEFLGRDGWAAPKL---KDASLSTSKARELYQQCVRIMRRLYQ  282 (520)
T ss_pred             HHHHHHHhcC------CCCCCceee------ecceEeeeeccCCCCcCccc---ccccCChHHHHHHHHHHHHHHHHHHH
Confidence            8888885332      110011111      235699999964322  122   12346777888888888888888887


Q ss_pred             hCCcccccCCCCCeEe
Q 013220          162 ELGIIHTDLKPENILL  177 (447)
Q Consensus       162 ~~gIiH~Dikp~Nill  177 (447)
                      .+++||.||.--|+|+
T Consensus       283 ~c~LVHADLSEfN~Ly  298 (520)
T KOG2270|consen  283 KCRLVHADLSEFNLLY  298 (520)
T ss_pred             HhceeccchhhhhheE
Confidence            7899999999999998

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=96.88  E-value=0.027  Score=51.87  Aligned_cols=124  Identities=16%  Similarity=0.197  Sum_probs=82.8

Q ss_pred             EeecccCceEEEEEEeCCCCeEEEEEEechhH-----------------HhHHHHHHHHHHHHHhhcCCCCCcceeeeec
Q 013220           42 RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-----------------QFAQAALHEIEVLSAVADGDPSNEKCVIRLI  104 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-----------------~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~  104 (447)
                      ..||.|+.=.||.--   .....+||+.....                 .......+|+.....+.......+.+|.+++
T Consensus         7 ~~i~~G~~R~cy~HP---~dp~~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~i~r~~   83 (199)
T PF10707_consen    7 DLIAQGGERDCYQHP---DDPNLCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSHIPRFY   83 (199)
T ss_pred             cccccCCCceEEECC---CCCCeEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCcccccccEe
Confidence            357999999999763   23456889877655                 2245677788877777623344788899999


Q ss_pred             ccccccCCCcceEEEEEecc---c----ccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEe
Q 013220          105 DHFKHAGPNGQHLCMVLEFL---G----DSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL  177 (447)
Q Consensus       105 ~~~~~~~~~~~~~~lvmE~~---~----~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill  177 (447)
                      +.....    .-.-+|+|.+   .    .+|.+++..   ..++. .....   +-.-..+|-++ +|+.+|++|.||++
T Consensus        84 G~veT~----~G~Glv~e~I~d~dG~~s~TL~~~l~~---~~~~~-~~~~~---L~~f~~~l~~~-~Iv~~dl~~~NIv~  151 (199)
T PF10707_consen   84 GFVETN----LGLGLVVELIRDADGNISPTLEDYLKE---GGLTE-ELRQA---LDEFKRYLLDH-HIVIRDLNPHNIVV  151 (199)
T ss_pred             EEEecC----CceEEEEEEEECCCCCcCccHHHHHHc---CCccH-HHHHH---HHHHHHHHHHc-CCeecCCCcccEEE
Confidence            987754    4567788876   2    246666643   23544 33332   23334577775 99999999999999


Q ss_pred             eec
Q 013220          178 VST  180 (447)
Q Consensus       178 ~~~  180 (447)
                      ...
T Consensus       152 ~~~  154 (199)
T PF10707_consen  152 QRR  154 (199)
T ss_pred             Eec
Confidence            663

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=96.84  E-value=0.022  Score=58.16  Aligned_cols=76  Identities=24%  Similarity=0.207  Sum_probs=51.4

Q ss_pred             EEEeecccCceEEEEEEeCCCCeEEEEEEech------h--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           40 AQRKLGWGQFSIVWLAYDTRTSSYVALKIQKS------A--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        40 l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~------~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      -.+.||.|..+.||++.+...++.++||....      .  ....+....|.+.|+.+.....   ..+.+++.+-.   
T Consensus        30 ~~~elggGn~N~VyrV~~~~g~~svIVKqa~p~~r~~g~~wpl~~eR~~~Eae~L~~l~~~~p---~~VPkV~~~D~---  103 (401)
T PRK09550         30 TAREIGDGNLNLVFRVSDTEGGKSVIVKQALPYVRVVGESWPLTLDRARIEAEALKIQAKYVP---DLVPKVYHYDE---  103 (401)
T ss_pred             eeeEcCCCceEEEEEEEeCCCCeEEEEEecCcccccccccccccHHHHHHHHHHHHHHHhhCC---CCCCeEEEECC---
Confidence            34689999999999998865446899996331      1  1234567789999998764322   23444454421   


Q ss_pred             CCcceEEEEEecc
Q 013220          112 PNGQHLCMVLEFL  124 (447)
Q Consensus       112 ~~~~~~~lvmE~~  124 (447)
                         ...++|||++
T Consensus       104 ---~~~~lVME~L  113 (401)
T PRK09550        104 ---ELAVTVMEDL  113 (401)
T ss_pred             ---CCCEEEEecC
Confidence               4578999998

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=96.69  E-value=0.015  Score=54.65  Aligned_cols=74  Identities=11%  Similarity=0.209  Sum_probs=45.7

Q ss_pred             EEeecccCceEEEEEEeCC-CCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEE
Q 013220           41 QRKLGWGQFSIVWLAYDTR-TSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCM  119 (447)
Q Consensus        41 ~~~lG~G~~g~Vy~a~~~~-~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~l  119 (447)
                      .+.|..|-.+.+|+..... .+..|++|+........-...+|+++++.+.....  .|   +++..+.        -.+
T Consensus         3 i~~l~gG~tN~~~~v~~~~~~~~~~vlR~~~~~~~~~~d~~~E~~~~~~l~~~gl--~P---~v~~~~~--------~~~   69 (235)
T cd05157           3 FKRFTGGITNKLVKVSNKEDNQDAVLVRVYGNKTELIIDRERELRIHKLLSKHGL--AP---KLYATFQ--------NGL   69 (235)
T ss_pred             EEEcCCcccceEEEEEcCCCCCCeEEEEEccCCccceecHHHHHHHHHHHHhCCC--CC---eEEEEeC--------CcE
Confidence            4567778889999996543 35678899766433222234579999999864331  23   3333221        137


Q ss_pred             EEecc-ccc
Q 013220          120 VLEFL-GDS  127 (447)
Q Consensus       120 vmE~~-~~~  127 (447)
                      +|||+ |.+
T Consensus        70 l~e~i~G~~   78 (235)
T cd05157          70 IYEFIPGRT   78 (235)
T ss_pred             EEEeeCCCc
Confidence            99998 543

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=96.62  E-value=0.006  Score=63.00  Aligned_cols=91  Identities=15%  Similarity=0.154  Sum_probs=57.6

Q ss_pred             ccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchh
Q 013220          292 FSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLD  371 (447)
Q Consensus       292 ~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (447)
                      +|+||||+|.++.++.-|...+....      ....+..+.+ .+..+...                            .
T Consensus       110 pKsdVwsl~~i~~el~L~~~l~~~~~------~s~~l~~i~k-~~~~d~~~----------------------------~  154 (725)
T KOG1093|consen  110 PKSDVWSLGFIILELYLGISLEAELT------ESEYLEILLK-YYTDDQEL----------------------------L  154 (725)
T ss_pred             cchhhhhHHHHHHHHHHhhHHHHHHH------HHHHHHHHHH-hccCchhH----------------------------H
Confidence            49999999999999999977664331      1111111111 11111110                            0


Q ss_pred             HHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          372 RLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       372 ~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                      .+.... .+-......+.+++.+|+-..|..||...++..++-|.+.
T Consensus       155 ~~a~e~-~~~~~~d~~~~~~~~~c~~~~~~ir~l~~~~~k~~i~~ev  200 (725)
T KOG1093|consen  155 STAMEH-LIQLLADKKRLPLLKKCLWLEPIIRPLPMELSKRCSFTEV  200 (725)
T ss_pred             HHHHHH-HHHHhhhHhHHHHhccCCccccccccchhHHhcCccHHHH
Confidence            000000 1223445678899999999999999999999999999876

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=96.17  E-value=0.024  Score=55.33  Aligned_cols=79  Identities=16%  Similarity=0.143  Sum_probs=47.5

Q ss_pred             EEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc--CCCcceEE
Q 013220           41 QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA--GPNGQHLC  118 (447)
Q Consensus        41 ~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~--~~~~~~~~  118 (447)
                      .+.|..|....+|+....  +..+++|+...  ........|+++++.+..... .   +.+.+..-...  ...+...+
T Consensus        19 i~~i~~G~~n~~y~v~~~--~~~~vLr~~~~--~~~~~~~~e~~~l~~L~~~g~-~---vp~~i~~~~g~~~~~~~~~~~   90 (296)
T cd05153          19 FEGISAGIENTNYFVTTD--SGRYVLTLFEK--VSAEELPFFLALLDHLAERGL-P---VPRPIADRDGEYLSELAGKPA   90 (296)
T ss_pred             eecccCccccceEEEEeC--CCcEEEEEcCC--CChHhccHHHHHHHHHHHCCC-C---CCccccCCCCcEeeeeCCceE
Confidence            556777888899998543  34688998764  234567789999999865421 1   33332211000  00123568


Q ss_pred             EEEecc-ccc
Q 013220          119 MVLEFL-GDS  127 (447)
Q Consensus       119 lvmE~~-~~~  127 (447)
                      +||+++ |..
T Consensus        91 ~l~~~i~G~~  100 (296)
T cd05153          91 ALVEFLAGEH  100 (296)
T ss_pred             EEEEeCCCCC
Confidence            999999 433

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>TIGR02721 ycfN_thiK thiamine kinase

Probab=96.16  E-value=0.02  Score=54.74  Aligned_cols=69  Identities=16%  Similarity=0.137  Sum_probs=42.7

Q ss_pred             ecccCceEEEEEEeCCCCeEEEEEEechhHHhH-HHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEEEe
Q 013220           44 LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFA-QAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLE  122 (447)
Q Consensus        44 lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~-~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE  122 (447)
                      +..|-.+.+|+..  .++..+++|+........ -...+|.++++.+.....  .|.++   ...        .-++|||
T Consensus         4 ~~~G~tn~~y~~~--~~~~~~vlR~~~~~~~~~~~~r~~E~~~l~~l~~~g~--~P~~i---~~~--------~~~~v~e   68 (256)
T TIGR02721         4 LSGGLTNRSWRIE--HPGISFVWRPQSPVCKALGVDRQREYQILQALSALGL--APKPI---LVN--------EHWLLVE   68 (256)
T ss_pred             CCCcCcCCeEEEE--eCCccEEEeeCCcccccccCcHHHHHHHHHHHHhcCC--CCceE---EEe--------CCEEEEE
Confidence            4567888999886  346678899765432211 235789999999975432  23333   211        1368999


Q ss_pred             cc-ccc
Q 013220          123 FL-GDS  127 (447)
Q Consensus       123 ~~-~~~  127 (447)
                      |+ |..
T Consensus        69 ~i~G~~   74 (256)
T TIGR02721        69 WLEGEV   74 (256)
T ss_pred             eccCcc
Confidence            99 533

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=95.75  E-value=0.093  Score=51.37  Aligned_cols=51  Identities=14%  Similarity=0.169  Sum_probs=36.7

Q ss_pred             EeecccCceEEEEEEeCC------CCeEEEEEEechhHHhHHHHHHHHHHHHHhhcC
Q 013220           42 RKLGWGQFSIVWLAYDTR------TSSYVALKIQKSAAQFAQAALHEIEVLSAVADG   92 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~------~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~   92 (447)
                      +.|..|-...+|+.....      .++.+++|+............+|.++++.+...
T Consensus         4 ~~l~gGltN~~y~v~~~~~~~~~~~~~~~vlRi~~~~~~~~~~r~~E~~~~~~l~~~   60 (302)
T cd05156           4 SKISGGLTNAVYKVSLPDEDALSDEPRKVLLRVYGQSVELLIDRERELVVFARLSER   60 (302)
T ss_pred             EEecCcccceeEEEEcCCcccccCCCCeEEEEEecCCCcceechHHHHHHHHHHHhC
Confidence            456667778999986533      257899998776544345678899999998754

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=95.75  E-value=0.021  Score=52.22  Aligned_cols=85  Identities=19%  Similarity=0.234  Sum_probs=59.9

Q ss_pred             HHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEEEeccc-ccHHHHHHh-hccCCCCHHHHHHHHHHHHHHHH
Q 013220           80 LHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLG-DSLLRLIKY-SRYKGLELNKVREICKYILTGLD  157 (447)
Q Consensus        80 ~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~~-~~L~~~~~~-~~~~~l~~~~~~~i~~qil~aL~  157 (447)
                      .+|.-+++.+.+     ..++.+++|++-.        .++.||.+ +.+...... ..+-..+......++.++++.+.
T Consensus         7 ~~E~lll~~l~~-----~~~~pk~lG~CG~--------~~v~E~~~~~~~~~~~~~l~~~~~~~w~~R~~iA~~lL~~l~   73 (188)
T PF12260_consen    7 NNEPLLLQLLQG-----SEPFPKLLGSCGR--------FYVVEYVGAGSLYGIYRPLSQFLQSPWEQRAKIALQLLELLE   73 (188)
T ss_pred             ccHHHHHHHcCC-----CCCCCCeeeECCC--------EEEEEeecCccccccccccccccccCHHHHHHHHHHHHHHHH
Confidence            458888999864     2479999998742        36779985 444311000 01122577888999999999999


Q ss_pred             HHHh---hCCcccccCCCCCeEee
Q 013220          158 YLHR---ELGIIHTDLKPENILLV  178 (447)
Q Consensus       158 ~lH~---~~gIiH~Dikp~Nill~  178 (447)
                      +++.   . .+.-.|++|+|+.+.
T Consensus        74 ~l~~~~~~-~~~lcDv~~~nfgv~   96 (188)
T PF12260_consen   74 ELDHGPLG-FFYLCDVSPDNFGVN   96 (188)
T ss_pred             HHhcCCCC-cEEEeecchHHeEEe
Confidence            9987   3 455679999999994

Proteins in this uncharacterised family are described as transmembrane proteins.

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=95.75  E-value=0.1  Score=52.49  Aligned_cols=74  Identities=20%  Similarity=0.234  Sum_probs=47.9

Q ss_pred             EeecccCceEEEEEEeCCCCeEEEEEEechh--------HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           42 RKLGWGQFSIVWLAYDTRTSSYVALKIQKSA--------AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~--------~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      ++||.|.-..||++.+...++.|+||.....        +...+...-|.+.|+......+.   .+.++|.+      +
T Consensus         1 ~EigdGnlN~VfrV~~~~g~~svIVKQAlp~vRv~g~~wpl~~~R~~~E~~~L~~~~~~~P~---~vP~vy~~------D   71 (370)
T TIGR01767         1 QEVGDGNLNLVFHVYDQEGDRAAIVKQALPYVRVVGESWPLTLDRARIESSALIRQGEHVPH---LVPRIFHF------D   71 (370)
T ss_pred             CcCCCCceEEEEEEEcCCCCeeEEEEEcCHHHhhcCCCCCCCccHHHHHHHHHHHhhccCcc---ccCeEEEE------c
Confidence            3689999999999987544468999953211        23345667788888887643221   34443432      2


Q ss_pred             cceEEEEEecc
Q 013220          114 GQHLCMVLEFL  124 (447)
Q Consensus       114 ~~~~~lvmE~~  124 (447)
                      .....+|||++
T Consensus        72 ~e~~~~vMEdL   82 (370)
T TIGR01767        72 TEMAVTVMEDL   82 (370)
T ss_pred             cccceehHhhC
Confidence            24567999998

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>PRK05231 homoserine kinase; Provisional

Probab=95.59  E-value=0.26  Score=48.54  Aligned_cols=77  Identities=10%  Similarity=0.024  Sum_probs=44.3

Q ss_pred             EEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecc-cccccCCCcceEEE
Q 013220           41 QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLID-HFKHAGPNGQHLCM  119 (447)
Q Consensus        41 ~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~-~~~~~~~~~~~~~l  119 (447)
                      .+.|+.|...++|+....  +..+++|+.. . ........|+++++.|..... ..|.++...+ .....  -+...++
T Consensus        27 ~~~l~~G~~n~~y~v~t~--~g~~vLK~~~-~-~~~~~l~~~~~~l~~L~~~gl-pvP~~i~~~~G~~~~~--~~g~~~~   99 (319)
T PRK05231         27 LKGIAEGIENSNFFLTTT--QGEYVLTLFE-R-LTAEDLPFFLGLMQHLAARGV-PVPAPVARRDGAALGE--LAGKPAA   99 (319)
T ss_pred             cchhccccccceEEEEeC--CCcEEEEEec-c-CChHHhHHHHHHHHHHHHCCC-CCCcceeCCCCCEeee--eCCEEEE
Confidence            345677887899998643  3368899875 1 223445567788888765432 2344433211 01000  1235789


Q ss_pred             EEecc
Q 013220          120 VLEFL  124 (447)
Q Consensus       120 vmE~~  124 (447)
                      +|+|+
T Consensus       100 l~~~l  104 (319)
T PRK05231        100 IVTFL  104 (319)
T ss_pred             EEEec
Confidence            99998

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=95.53  E-value=0.013  Score=57.44  Aligned_cols=134  Identities=22%  Similarity=0.331  Sum_probs=83.3

Q ss_pred             CccccccCccccCC-ceEEEEeecccCceEEEEEEeCCCCeEEEEEEech----------hHH-------------hHHH
Q 013220           23 GYHAVRVGDLFNGG-RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKS----------AAQ-------------FAQA   78 (447)
Q Consensus        23 ~~~~~~~g~~~~~~-~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~----------~~~-------------~~~~   78 (447)
                      ||-.+.+-.+.+.+ -+.+.++||-|.-+.||.+-+ ..|.+.++|+-..          ...             +.-.
T Consensus        78 GyDyLAlktL~~R~~v~svGnqIGVGKESDIY~v~d-~~G~~~~lK~HRLGRtSFR~Vk~kRDY~r~r~~~sWlyLSRla  156 (465)
T KOG2268|consen   78 GYDYLALKTLSNRGSVESVGNQIGVGKESDIYVVAD-EEGNPLILKLHRLGRTSFRNVKNKRDYLRKRKSGSWLYLSRLA  156 (465)
T ss_pred             cchHHHHHHHHhcchhhhhccccccccccceEEEec-CCCCchhHHHHhhhhhhHHHhhhhhhhHhcCCccchhhhHHHH
Confidence            44444444455533 578999999999999999975 3577888885211          110             1113


Q ss_pred             HHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 013220           79 ALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLD  157 (447)
Q Consensus        79 ~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~  157 (447)
                      ..+|...|+.|....    --|.+-++        ...-++|||++ |..|..+-.        ...+..+...+..-+-
T Consensus       157 a~kEfafmkaL~e~g----fpVPkpiD--------~~RH~Vvmelv~g~Pl~~v~~--------v~d~~~ly~~lm~~Iv  216 (465)
T KOG2268|consen  157 ATKEFAFMKALYERG----FPVPKPID--------HNRHCVVMELVDGYPLRQVRH--------VEDPPTLYDDLMGLIV  216 (465)
T ss_pred             HHHHHHHHHHHHHcC----CCCCCccc--------ccceeeHHHhhcccceeeeee--------cCChHHHHHHHHHHHH
Confidence            456888888885321    01222222        24567999999 655654321        1123344455555566


Q ss_pred             HHHhhCCcccccCCCCCeEee
Q 013220          158 YLHRELGIIHTDLKPENILLV  178 (447)
Q Consensus       158 ~lH~~~gIiH~Dikp~Nill~  178 (447)
                      -|-.+ |+||+|.+-=||++.
T Consensus       217 ~la~~-GlIHgDFNEFNimv~  236 (465)
T KOG2268|consen  217 RLANH-GLIHGDFNEFNIMVK  236 (465)
T ss_pred             HHHHc-CceecccchheeEEe
Confidence            67776 999999999999993

>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]

Probab=95.49  E-value=0.0089  Score=68.69  Aligned_cols=144  Identities=11%  Similarity=0.022  Sum_probs=100.4

Q ss_pred             CcceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHHhhCC----cccc
Q 013220           96 NEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYK--GLELNKVREICKYILTGLDYLHRELG----IIHT  168 (447)
Q Consensus        96 ~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~--~l~~~~~~~i~~qil~aL~~lH~~~g----IiH~  168 (447)
                      .|+++..........  +....|..|+++ +|.+++.+..+-.+  ...+.-+-....+.+.+..-+|+..+    -+|+
T Consensus      1287 ~h~~~~~~p~rI~ps--~s~ee~~r~~~~~~g~~f~iIikg~ee~~~ld~~~v~~~~kvsvl~~~~~ls~tnlg~T~v~~ 1364 (2724)
T KOG1826|consen 1287 KHYLTEVDPLRIPPS--ESTEEYIRSLYVEFGKLFSIIIKGLEESPDLDRSPVHLRHKVSVLNRNVILSLTNLGNTNVSK 1364 (2724)
T ss_pred             hceeeecccccCCCC--CChHHHHHHHHHHHhHHHHHHHhccccCCcchhchHHHHHHHHHhccchhhhcccCCccchhh
Confidence            667777666655544  445788999999 99999988754322  23333333333333666666665324    3688


Q ss_pred             cCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccC
Q 013220          169 DLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCL  248 (447)
Q Consensus       169 Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (447)
                      ++|+-|.++                                                                       
T Consensus      1365 ~Lkf~lpmI----------------------------------------------------------------------- 1373 (2724)
T KOG1826|consen 1365 SLKFTLPMI----------------------------------------------------------------------- 1373 (2724)
T ss_pred             hhhhhccce-----------------------------------------------------------------------
Confidence            999999988                                                                       


Q ss_pred             CCcccceeEeecCccccccc---ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCC
Q 013220          249 DGIDMRCKVVDFGNACRANK---QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLF  313 (447)
Q Consensus       249 ~~~~~~~kL~Dfg~a~~~~~---~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf  313 (447)
                       ..+.++++.++|+.+....   ...-.++++.|++|+....-.++.++|+|+.|+-+|..-.|..+|
T Consensus      1374 -Vtny~v~~gk~gLdKIknp~~sf~Gl~l~sp~~v~qli~N~ik~t~rsdilr~s~~ly~rs~~n~~f 1440 (2724)
T KOG1826|consen 1374 -VTNYNVKLGKGGLDKIKNPVLSFFGLELCSPIYVLQLIKNEIKFTKRSDILRRSLSLYLRSDGNAYF 1440 (2724)
T ss_pred             -ecCCcccccccccccccCchHhhhhhhhCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccHHH
Confidence             3356789999999873322   233347788999999988878888899999999999887776554

>PRK12396 5-methylribose kinase; Reviewed

Probab=95.45  E-value=0.11  Score=52.86  Aligned_cols=75  Identities=20%  Similarity=0.244  Sum_probs=50.7

Q ss_pred             EEeecccCceEEEEEEeCCCCeEEEEEEechh-------HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           41 QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA-------AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        41 ~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~-------~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      .+.||.|.-..||++.+...+..|+||.....       ....+...-|.++|+.+....+.   .+.++|.+      +
T Consensus        34 ~~eigdGnlN~VfrV~~~~~~~svIVKQAlp~vRv~~swpL~~~R~~~E~~aL~~~~~~~P~---~VP~vy~~------D  104 (409)
T PRK12396         34 CKEIGDGNLNYVFRVWDEQKNISVIVKQAGDTARISDEFKLSTNRIRIESDVLQLEEELAPG---LVPKVYLF------D  104 (409)
T ss_pred             eeEcCCCceEEEEEEeeCCCCceEEEEeccHhhccCCCCCCChHHHHHHHHHHHHHHhhCCC---cCCeEEEE------C
Confidence            67899999999999987544678999952211       23456677899999988653321   24444433      2


Q ss_pred             cceEEEEEecc
Q 013220          114 GQHLCMVLEFL  124 (447)
Q Consensus       114 ~~~~~lvmE~~  124 (447)
                      .....+|||++
T Consensus       105 ~e~~~~vMEdL  115 (409)
T PRK12396        105 SVMNCCVMEDL  115 (409)
T ss_pred             cHHhhHHHHhC
Confidence            35677999988

>PRK10593 hypothetical protein; Provisional

Probab=95.29  E-value=0.13  Score=50.51  Aligned_cols=110  Identities=18%  Similarity=0.172  Sum_probs=71.4

Q ss_pred             eEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceE
Q 013220           38 YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHL  117 (447)
Q Consensus        38 y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~  117 (447)
                      -.-.+.||.|..+.||+.....  ..+.+|+.+.. .....+..|.+.|+.+.....   ..|.++++.+.... .....
T Consensus        16 ~~~~~~i~~G~~~~vy~~~~~~--~~~~~k~~~~~-~~~~~~~~Ea~~L~~L~~~~~---vpVP~V~~~~~~~~-~~g~~   88 (297)
T PRK10593         16 LSRVECISEQPYAALWALYDSQ--GNPMPLMARSF-STPGVAQQEAWKLSMLARSGT---VRMPTVYGVMTHEQ-SPGPD   88 (297)
T ss_pred             hheeeecCCccceeEEEEEcCC--CCEEEEEeccc-ccchHHHHHHHHHHHHccCCC---CCcCcEEEEeccCC-cCCCe
Confidence            3446679999999999985432  24677875431 134588999999999975422   23445555443211 22458


Q ss_pred             EEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh
Q 013220          118 CMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR  161 (447)
Q Consensus       118 ~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~  161 (447)
                      ++|||++ |..+.+.       ..+......+..+++.+|+-||+
T Consensus        89 ~LVmE~i~G~~~~~~-------~~~~~~~~~l~~~l~~~La~LH~  126 (297)
T PRK10593         89 VLLLERLRGVSVEAP-------ARTPERWEQLKDQIVEGLLAWHR  126 (297)
T ss_pred             EEEEeccCCEecCCC-------CCCHHHHHHHHHHHHHHHHHHhC
Confidence            9999999 5555431       12333455667788899999997

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=95.06  E-value=0.3  Score=48.01  Aligned_cols=79  Identities=11%  Similarity=0.034  Sum_probs=44.8

Q ss_pred             EEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEE
Q 013220           41 QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMV  120 (447)
Q Consensus        41 ~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lv  120 (447)
                      .+.++.|....+|+....  +..+++|+..... .......|+++++.|..... ..|.++....-..... .....+++
T Consensus        27 i~~~~~G~~n~~y~v~t~--~~~~vLK~~~~~~-~~~~i~~e~~~l~~L~~~g~-pvp~~i~t~~g~~~~~-~~g~~~~l  101 (307)
T TIGR00938        27 LKGIAEGVENSNYLLTTD--VGRYILTLYEKRV-KAEELPFFLALTTHLAARGL-PVPKPVKSRDGRQLST-LAGKPACL  101 (307)
T ss_pred             ccccCCccccceEEEEeC--CCcEEEEEecCCC-CHHHHHHHHHHHHHHHHCCC-CCCccccCCCCCeehh-cCCeEEEE
Confidence            556777777899998643  3367889765421 13455677888888865432 2333333211100000 12357899


Q ss_pred             Eecc
Q 013220          121 LEFL  124 (447)
Q Consensus       121 mE~~  124 (447)
                      |+|+
T Consensus       102 ~e~i  105 (307)
T TIGR00938       102 VEFL  105 (307)
T ss_pred             EEeC
Confidence            9998

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>PLN02756 S-methyl-5-thioribose kinase

Probab=94.79  E-value=0.43  Score=48.85  Aligned_cols=75  Identities=15%  Similarity=0.180  Sum_probs=48.8

Q ss_pred             EEEeecccCceEEEEEEeCCCCeEEEEEEec-----hhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           40 AQRKLGWGQFSIVWLAYDTRTSSYVALKIQK-----SAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        40 l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~-----~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      -.+.||.|.-..||+..+  .+..|+||...     ..+   ........|.+.|+.+.....   ..|.+++.+..   
T Consensus        36 ~~~eiggGn~N~VyrV~~--~~~svVVKqa~p~~r~vga~wpl~~~R~~~Ea~aL~~~~~~~p---~~VPkVy~~de---  107 (418)
T PLN02756         36 KIKEVGDGNLNFVYIVVS--SSGSFVIKQALPYIRCIGESWPMTKERAYFEATALREHGRLCP---DHVPEVYHFDR---  107 (418)
T ss_pred             eEEEcCCCceeeEEEEEc--CCccEEEEeCCccccCCCccccCCccHHHHHHHHHHHhhhcCC---CCCCeEEEECC---
Confidence            477899999999999976  34568999644     111   134455667888877754322   24555555543   


Q ss_pred             CCcceEEEEEeccc
Q 013220          112 PNGQHLCMVLEFLG  125 (447)
Q Consensus       112 ~~~~~~~lvmE~~~  125 (447)
                         +..+++||++.
T Consensus       108 ---d~~vlvME~L~  118 (418)
T PLN02756        108 ---TMALIGMRYLE  118 (418)
T ss_pred             ---CCCEEEEeecC
Confidence               34678899993

>PLN02236 choline kinase

Probab=94.46  E-value=0.23  Score=49.81  Aligned_cols=56  Identities=11%  Similarity=-0.008  Sum_probs=36.5

Q ss_pred             ceEEEEeecccCceEEEEEEeCC----CCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTR----TSSYVALKIQKSAAQFAQAALHEIEVLSAVADGD   93 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~----~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~   93 (447)
                      ...+. .|-.|-+..+|++....    +++.|++|+........-.-..|.++++.+....
T Consensus        38 ~~~i~-~l~gGlTN~~y~v~~~~~~~~~~~~~v~Ri~g~~t~~~idR~~E~~~~~~l~~~g   97 (344)
T PLN02236         38 ALQVI-PLKGAMTNEVFQIKWPTKEGNLGRKVLVRIYGEGVELFFDRDDEIRTFECMSRHG   97 (344)
T ss_pred             cEEEE-EcCCcccceeEEEEeCCCCCCCCCeEEEEEccCCCCeeechHHHHHHHHHHHHcC
Confidence            44444 55458889999986432    3468999987654322223467999999987543

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=94.36  E-value=0.45  Score=46.20  Aligned_cols=45  Identities=22%  Similarity=0.125  Sum_probs=31.3

Q ss_pred             cccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhc
Q 013220           45 GWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVAD   91 (447)
Q Consensus        45 G~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~   91 (447)
                      ++|-...|+... ...+..+++|+.+... ......+|.++|+.+..
T Consensus        20 ~~g~~~~v~~i~-~~~g~~~VlR~p~~~~-~~~~l~rE~~vL~~L~~   64 (276)
T cd05152          20 ESGLDFQVVFAK-DTDGVPWVLRIPRRPD-VSERAAAEKRVLALVRK   64 (276)
T ss_pred             CCcceeEEEEEE-cCCCCeEEEEecCCHH-HHHHHHHHHHHHHHHHh
Confidence            555556677663 2346789999886433 24567899999999975

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=94.22  E-value=0.18  Score=50.41  Aligned_cols=71  Identities=17%  Similarity=0.121  Sum_probs=50.5

Q ss_pred             eeecccccccCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEe
Q 013220          101 IRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL  177 (447)
Q Consensus       101 v~~~~~~~~~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill  177 (447)
                      +.+...+.....++.+.|++|++.|+.+... .     -...+++..++.+.+.-+.-+..++..=|||+..+||++
T Consensus       285 ~~~e~~~vv~~de~~y~yl~~kdhgt~is~i-k-----~~~~~e~lsff~s~~sil~~lekkf~fehrnlt~~niLI  355 (488)
T COG5072         285 VFLETLKVVSLDETLYLYLHFKDHGTPISII-K-----ADRSEEELSFFWSCISILDILEKKFPFEHRNLTLDNILI  355 (488)
T ss_pred             hhhhcceEEecCCceEEEEEEecCCceeeee-e-----cccHHHHHHHHHHHHHHHhhhhhcCCcccccccccceee
Confidence            3333333333345679999999988776432 1     134567778888888877777777778899999999999

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=93.31  E-value=0.7  Score=45.74  Aligned_cols=80  Identities=18%  Similarity=0.105  Sum_probs=45.6

Q ss_pred             eEEEEeecccCceEEEEEEeCCCCeEEEEEEec--hhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           38 YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQK--SAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        38 y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~--~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      ..+.+.+-.|....+|...+.  ++.++++...  ..........+|+++++.+....    .-+...++.+....  -.
T Consensus        27 ~~~v~~~~~G~sn~t~~~~~~--~~~~vlR~P~~~~~~~~~~~~~re~~~i~~l~~~~----vP~p~~~~~~~~~~--~g   98 (321)
T COG3173          27 LLIVEEISGGWSNDTFRLGDT--GQKYVLRKPPRGDPVESAHDEKREYRVIAALLDVD----VPVPRAFGLCGEGY--LG   98 (321)
T ss_pred             CceeeeccCCcccceEEEecC--CceEEEecCCccccchhhhHHHhHHHHHHHhcCCC----CCCcccccccccCC--CC
Confidence            345555544444556666443  7788888332  22345667888999999986431    11222333333221  13


Q ss_pred             eEEEEEeccc
Q 013220          116 HLCMVLEFLG  125 (447)
Q Consensus       116 ~~~lvmE~~~  125 (447)
                      ..+.||+++.
T Consensus        99 ~pf~v~~~ve  108 (321)
T COG3173          99 TPFYVMEWVE  108 (321)
T ss_pred             CceEEEEEec
Confidence            6789999993

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=92.64  E-value=0.84  Score=44.61  Aligned_cols=76  Identities=18%  Similarity=0.188  Sum_probs=46.9

Q ss_pred             eEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceE
Q 013220           38 YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHL  117 (447)
Q Consensus        38 y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~  117 (447)
                      -+-.+.++.|..+.+|+..  .+++.+.+|+-.  ......+..|.+-|+.|.......   +.+.+......    +..
T Consensus        19 i~~~~~v~GG~i~~a~~~~--~~~~~~FvK~~~--~~~~~~f~~Ea~gL~~L~~~~~~~---vP~vi~~G~~~----~~~   87 (288)
T PF03881_consen   19 ITSIEPVSGGDINEAYRLD--TDGGSYFVKVNS--ESGRDMFEGEAEGLKALAEANPIR---VPKVIAWGEYD----DDA   87 (288)
T ss_dssp             --EEEEE--SSSSEEEEEE--TTS-EEEEEEEE--GGGCCHHHHHHHHHHHHCHTTTSB---S--EEEEEE-S----SCC
T ss_pred             eeeeEecCCCChhheEEEE--CCCccEEEEecC--hhhHHHHHHHHHHHHHHHhcCCCC---CCeEEEEEeec----CCc
Confidence            3455668889999999986  567789999766  333567899999999996554334   44444443322    334


Q ss_pred             EEEEecc
Q 013220          118 CMVLEFL  124 (447)
Q Consensus       118 ~lvmE~~  124 (447)
                      ++||||+
T Consensus        88 fLlle~l   94 (288)
T PF03881_consen   88 FLLLEFL   94 (288)
T ss_dssp             EEEEE--
T ss_pred             eEEEEee
Confidence            8999998

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=92.25  E-value=0.85  Score=45.46  Aligned_cols=56  Identities=9%  Similarity=0.190  Sum_probs=35.8

Q ss_pred             ceEEEEeecccCceEEEEEEeCCC---CeEEEEEEechhHHhHHHHHHHHHHHHHhhcCC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRT---SSYVALKIQKSAAQFAQAALHEIEVLSAVADGD   93 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~---~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~   93 (447)
                      ...+....| |-+..+|+......   ...|++|+........-.-.+|.++++.+....
T Consensus        16 ~i~i~~l~g-GlTN~~~~v~~~~~~~~~~~~v~Ri~g~~t~~~IdR~~E~~il~~l~~~g   74 (330)
T PLN02421         16 DFSVERISG-GITNLLLKVSVKEENGNEVSVTVRLFGPNTDYVIDRERELQAIKYLSAAG   74 (330)
T ss_pred             ceEEEEeCC-cccceEEEEEecCCCCCCceEEEEEecCCcCeEechHHHHHHHHHHHhcC
Confidence            445544444 88889999864332   247899987654332233467899999987543

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=92.20  E-value=0.46  Score=44.45  Aligned_cols=73  Identities=18%  Similarity=0.231  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 013220           76 AQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILT  154 (447)
Q Consensus        76 ~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~  154 (447)
                      ...++++.+++.+++        +|+++..      .++...-++.|+| .....           .    ..++.-=+.
T Consensus       102 ~~~y~nky~v~Armh--------GilrL~N------Dn~~~yGvIlE~Cy~~~i~-----------~----~N~i~agi~  152 (308)
T PF07387_consen  102 DALYFNKYRVFARMH--------GILRLKN------DNNYKYGVILERCYKIKIN-----------F----SNFITAGIK  152 (308)
T ss_pred             hhhhhhhhhHHHHhh--------heeEeec------CCCceeEEEEeeccCcccc-----------h----hHHHHHhHH
Confidence            456788899999885        2666552      2566788999999 33221           0    011111134


Q ss_pred             HHHHHH-hhCCcccccCCCCCeEe
Q 013220          155 GLDYLH-RELGIIHTDLKPENILL  177 (447)
Q Consensus       155 aL~~lH-~~~gIiH~Dikp~Nill  177 (447)
                      +|.-.| ++.+.+|||..|+|||-
T Consensus       153 ~L~~fH~~~~~~lHGD~np~NiM~  176 (308)
T PF07387_consen  153 DLMDFHSENQHCLHGDCNPDNIMC  176 (308)
T ss_pred             HHHHhhccCCCeecCCCChhheee
Confidence            677788 34589999999999998

The function of this family is unknown.

>KOG1236 consensus Predicted unusual protein kinase [General function prediction only]

Probab=92.07  E-value=0.62  Score=47.39  Aligned_cols=59  Identities=27%  Similarity=0.445  Sum_probs=40.1

Q ss_pred             EEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH-hhCCcccccCCCCCeEeee
Q 013220          117 LCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLH-RELGIIHTDLKPENILLVS  179 (447)
Q Consensus       117 ~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH-~~~gIiH~Dikp~Nill~~  179 (447)
                      ..++-+|. |-.+..++...   +.+++..+.++.-...|+-.|- -. +.+|.|+.|.||++.-
T Consensus       320 ~vl~E~~~~Gl~v~~~v~~~---~~pe~l~kkva~lg~~AllkMl~vD-NFvHaDlHPGNVlirf  380 (565)
T KOG1236|consen  320 LVLVETYERGLSVLRFVKWK---SQPEALVKKVAKLGVNALLKMLIVD-NFVHADLHPGNVLIRF  380 (565)
T ss_pred             ceeeeeccccccHHhhhhcc---cChHHHHHHHHHHHHHHHHHHHHhh-cceecccCCCcEEEEe
Confidence            45565666 77888887643   2455555666666666655433 33 8999999999999954

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=90.67  E-value=3.1  Score=41.50  Aligned_cols=82  Identities=17%  Similarity=0.151  Sum_probs=47.4

Q ss_pred             eecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCC-CcceeeeecccccccCCCcceEEEEE
Q 013220           43 KLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPS-NEKCVIRLIDHFKHAGPNGQHLCMVL  121 (447)
Q Consensus        43 ~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~-~~~~Iv~~~~~~~~~~~~~~~~~lvm  121 (447)
                      .|.+ .-..||+.+...  ..+++|+.... .....+.-|++.++-|....+. --| |...=+.....-.++.+..-++
T Consensus        33 ~l~s-~eN~~f~~~~~~--g~~iLki~~~~-~~~~~i~~el~~l~~La~~~i~v~~P-l~~~dG~~l~~~~~~~r~a~lf  107 (331)
T COG2334          33 GLNS-EENSNFRVQTED--GRYILKIYRPG-WTRAEIPFELALLQHLAERGIPVPAP-LPSLDGELLEALSGGPRPAALF  107 (331)
T ss_pred             cccc-ccCceEEEEecC--CCeEEEEecCC-CCHHHHHHHHHHHHHHHHcCCCCCCC-ccCCCcchhhhccCCceeEEEE
Confidence            3444 456788886543  33499998887 6677888899999998754321 111 2222222221111113677888


Q ss_pred             ecc-cccHH
Q 013220          122 EFL-GDSLL  129 (447)
Q Consensus       122 E~~-~~~L~  129 (447)
                      +|+ |..+.
T Consensus       108 ~~l~G~~~~  116 (331)
T COG2334         108 EYLPGRPLE  116 (331)
T ss_pred             EecCCcCcC
Confidence            998 43343

>PRK11768 serine/threonine protein kinase; Provisional

Probab=89.09  E-value=7.8  Score=38.44  Aligned_cols=45  Identities=16%  Similarity=0.052  Sum_probs=31.9

Q ss_pred             cCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcC
Q 013220           47 GQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADG   92 (447)
Q Consensus        47 G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~   92 (447)
                      +.-..||+... ..+..+++|+..........+..|++.+..|...
T Consensus        36 s~eN~vy~v~~-~~~~~~vlKv~r~~~~~~~~i~~E~~~l~~L~~~   80 (325)
T PRK11768         36 SYENRVYQFGD-EDGRRVVAKFYRPERWSDAQILEEHAFALELAEA   80 (325)
T ss_pred             cccceEEEEec-CCCCEEEEEEcCcccCCHHHHHHHHHHHHHHHHC
Confidence            44467888864 3456799998865444566788899999888653

>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []

Probab=85.07  E-value=0.56  Score=39.37  Aligned_cols=46  Identities=17%  Similarity=0.209  Sum_probs=35.8

Q ss_pred             EEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHh
Q 013220           41 QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAV   89 (447)
Q Consensus        41 ~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l   89 (447)
                      .+.||.|+-|.||+|+... |+.||||+.+....  +.+...+++++.+
T Consensus        16 ~~PlasASiaQVh~a~l~~-g~~VaVKV~rP~i~--~~i~~Dl~~l~~~   61 (119)
T PF03109_consen   16 PEPLASASIAQVHRARLKD-GEEVAVKVQRPGIE--EQIEADLRILRRL   61 (119)
T ss_pred             cchhhheehhhheeeeecc-cchhhhhhcchHHH--HHHHHHHHHHHHH
Confidence            3569999999999998644 89999998876543  5566677777766

These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.

>PTZ00384 choline kinase; Provisional

Probab=84.90  E-value=6.4  Score=40.11  Aligned_cols=72  Identities=14%  Similarity=0.153  Sum_probs=40.2

Q ss_pred             EEEeecccCceEEEEEEeCCCC------eEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           40 AQRKLGWGQFSIVWLAYDTRTS------SYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        40 l~~~lG~G~~g~Vy~a~~~~~~------~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      -.+.|..|-.+.+|++......      +.|++++........-.-..|+++++.+....     .-.++++.|.     
T Consensus        54 ~i~~l~gGLTN~l~~v~~~~~~~~~~~~k~Vl~R~~g~~~~l~IdR~~E~~i~~~Ls~~g-----lgP~l~~~f~-----  123 (383)
T PTZ00384         54 EIKKMNNGITNQVYQATLVDGDKDRYPIKSVCIKKSSTYNSLVIDNDLQYNIAKLLGDNN-----FGPKIIGRFG-----  123 (383)
T ss_pred             EEEEeCCcccceEEEEEecCCCCCccccceEEEEeccCCCceEeccHHHHHHHHHHHhCC-----CCCeEEEecC-----
Confidence            3445555899999999643321      22555543222111223456889999986432     2233444442     


Q ss_pred             cceEEEEEecc
Q 013220          114 GQHLCMVLEFL  124 (447)
Q Consensus       114 ~~~~~lvmE~~  124 (447)
                         -+++.||+
T Consensus       124 ---~g~l~efI  131 (383)
T PTZ00384        124 ---DFTIQEWV  131 (383)
T ss_pred             ---CEEEEEEe
Confidence               35888988

>PTZ00296 choline kinase; Provisional

Probab=81.69  E-value=11  Score=39.29  Aligned_cols=54  Identities=11%  Similarity=0.046  Sum_probs=36.5

Q ss_pred             EEEeecccCceEEEEEEeCC--------CCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCC
Q 013220           40 AQRKLGWGQFSIVWLAYDTR--------TSSYVALKIQKSAAQFAQAALHEIEVLSAVADGD   93 (447)
Q Consensus        40 l~~~lG~G~~g~Vy~a~~~~--------~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~   93 (447)
                      -.+.|..|-...+|++....        .++.|++|+........-.-..|.++++.+....
T Consensus       109 ~i~~l~gGlTN~~f~v~~~~~~~~~~~~~~~~~lvRiyG~~te~lIdR~~E~~v~~~ls~~g  170 (442)
T PTZ00296        109 RVNQILSGLTNQLFEVSLKEETANNYPSIRRRVLFRIYGKDVDELYNPISEFEVYKTMSKYR  170 (442)
T ss_pred             EEEEecCcccCceEEEEecCCCCccccCcCceEEEEecCCCccceeCHHHHHHHHHHHHHCC
Confidence            45566668888999986432        1468999987655433334567888888886543

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=80.01  E-value=3.2  Score=40.45  Aligned_cols=66  Identities=14%  Similarity=0.111  Sum_probs=36.5

Q ss_pred             EEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecc-cccccCCCcceEEEEEecc
Q 013220           51 IVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLID-HFKHAGPNGQHLCMVLEFL  124 (447)
Q Consensus        51 ~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~-~~~~~~~~~~~~~lvmE~~  124 (447)
                      .||+....  +..+++|+....   ......|++++..|..... .-|.++...+ .+...  .+...+++++++
T Consensus        11 ~v~~v~t~--~g~~~LK~~~~~---~~~~~~~~~~~~~L~~~g~-~vp~~i~t~~g~~~~~--~~~~~~~l~~~i   77 (313)
T TIGR02906        11 NVYKVETD--SGNKCLKKINYP---PERLLFILGAQEHLRKNGF-NIPKILKTKDGELYVK--YNGDLYVLTEWI   77 (313)
T ss_pred             cEEEEEeC--CCCeEEEEcCCC---HHHHHHHHHHHHHHHHcCC-CCCceeecCCCCEEEE--ECCEEEEEehhc
Confidence            38888642  336889977533   2345667888888765432 3233333211 11111  134688999998

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	447
3beg_A	381	Crystal Structure Of Sr Protein Kinase 1 Complexed		1e-98
1wbp_A	397	Srpk1 Bound To 9mer Docking Motif Peptide Length =		2e-98
2x7g_A	389	Structure Of Human Serine-Arginine-Rich Protein-Spe		2e-95
1q8y_A	373	The Structure Of The Yeast Sr Protein Kinase, Sky1p		1e-78
1how_A	373	The X-Ray Crystal Structure Of Sky1p, An Sr Protein		4e-78
3nr9_A	368	Structure Of Human Cdc2-Like Kinase 2 (Clk2) Length		2e-31
1z57_A	339	Crystal Structure Of Human Clk1 In Complex With 10z		3e-31
2vag_A	339	Crystal Structure Of Di-Phosphorylated Human Clk1 I		2e-30
3llt_A	360	Crystal Structure Of Pf14_0431, Kinase Domain Lengt		3e-29
2wu6_A	381	Crystal Structure Of The Human Clk3 In Complex With		3e-26
2eu9_A	355	Crystal Structure Of Clk3 Length = 355		3e-26
2exe_A	357	Crystal Structure Of The Phosphorylated Clk3 Length		3e-26
3kvw_A	429	Crystal Structure Of Dual-Specificity Tyrosine Phos		7e-19
3kvw_A	429	Crystal Structure Of Dual-Specificity Tyrosine Phos		3e-17
3k2l_A	429	Crystal Structure Of Dual-Specificity Tyrosine Phos		7e-19
3k2l_A	429	Crystal Structure Of Dual-Specificity Tyrosine Phos		3e-17
4azf_A	417	Human Dyrk2 In Complex With Leucettine L41 Length =		9e-19
4azf_A	417	Human Dyrk2 In Complex With Leucettine L41 Length =		8e-17
2vx3_A	382	Crystal Structure Of The Human Dual Specificity Tyr		9e-16
2vx3_A	382	Crystal Structure Of The Human Dual Specificity Tyr		2e-13
3anq_A	368	Human Dyrk1aINHIBITOR COMPLEX Length = 368		1e-15
3anq_A	368	Human Dyrk1aINHIBITOR COMPLEX Length = 368		4e-14
4aze_A	382	Human Dyrk1a In Complex With Leucettine L41 Length		1e-15
4aze_A	382	Human Dyrk1a In Complex With Leucettine L41 Length		2e-13
3oz6_A	388	Crystal Structure Of Mapk From Cryptosporidium Parv		2e-11
1cm8_A	367	Phosphorylated Map Kinase P38-Gamma Length = 367		3e-11
3oht_A	389	Crystal Structure Of Salmo Salar P38alpha Length =		2e-10
2zoq_A	382	Structural Dissection Of Human Mitogen-Activated Ki		2e-10
2pk9_A	317	Structure Of The Pho85-pho80 Cdk-cyclin Complex Of		4e-10
3sa0_A	360	Complex Of Erk2 With Norathyriol Length = 360		5e-10
3vuk_A	370	Crystal Structure Of A Cysteine-deficient Mutant M5		5e-10
3v3v_A	379	Structural And Functional Analysis Of Quercetagetin		5e-10
3vui_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		5e-10
4fv7_A	360	Crystal Structure Of The Erk2 Complexed With E94 Le		5e-10
3fi3_A	364	Crystal Structure Of Jnk3 With Indazole Inhibitor,		6e-10
3vuh_A	370	Crystal Structure Of A Cysteine-deficient Mutant M3		6e-10
3kvx_A	364	Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Le		6e-10
3fv8_A	355	Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Le		6e-10
2r9s_A	356	C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Qu		6e-10
3e7o_A	360	Crystal Structure Of Jnk2 Length = 360		7e-10
4e5a_X	360	The W197a Mutant Of P38a Map Kinase Length = 360		7e-10
3fi2_A	353	Crystal Structure Of Jnk3 With Amino-Pyrazole Inhib		7e-10
3vug_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		8e-10
3vud_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		8e-10
3npc_A	364	Crystal Structure Of Jnk2 Complexed With Birb796 Le		8e-10
1pme_A	380	Structure Of Penta Mutant Human Erk2 Map Kinase Com		8e-10
1jnk_A	423	The C-Jun N-Terminal Kinase (Jnk3s) Complexed With		9e-10
1yw2_A	360	Mutated Mus Musculus P38 Kinase (Mp38) Length = 360		1e-09
2ghl_A	348	Mutant Mus Musculus P38 Kinase Domain In Complex Wi		1e-09
3ttj_A	464	Crystal Structure Of Jnk3 Complexed With Cc-359, A		1e-09
1pmn_A	364	Crystal Structure Of Jnk3 In Complex With An Imidaz		1e-09
3tei_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		1e-09
2ok1_A	365	Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3		1e-09
4gsb_A	364	Monoclinic Crystal Form Of The Apo-Erk2 Length = 36		1e-09
2o0u_A	364	Crystal Structure Of Human Jnk3 Complexed With N-{3		1e-09
3oxi_A	362	Design And Synthesis Of Disubstituted Thiophene And		1e-09
4exu_A	371	Mapk13, Inactive Form Length = 371		1e-09
3ptg_A	363	Design And Synthesis Of A Novel, Orally Efficacious		1e-09
4h36_A	356	Crystal Structure Of Jnk3 In Complex With Atf2 Pept		1e-09
2exc_X	356	Inhibitor Complex Of Jnk3 Length = 356		1e-09
3coi_A	353	Crystal Structure Of P38delta Kinase Length = 353		1e-09
2b1p_A	355	Inhibitor Complex Of Jnk3 Length = 355		1e-09
4fux_A	360	Crystal Structure Of The Erk2 Complexed With E75 Le		1e-09
3qyw_A	364	Crystal Structure Of Erk2 In Complex With An Inhibi		1e-09
2ojg_A	380	Crystal Structure Of Erk2 In Complex With N,n-dimet		1e-09
3gc9_A	370	The Structure Of P38beta C119s, C162s In Complex Wi		1e-09
3py3_A	380	Crystal Structure Of Phosphorylated P38alpha Map Ki		1e-09
3gc8_A	370	The Structure Of P38beta C162s In Complex With A Di		1e-09
4h3q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		2e-09
3zuv_A	364	Crystal Structure Of A Designed Selected Ankyrin Re		2e-09
2erk_A	365	Phosphorylated Map Kinase Erk2 Length = 365		2e-09
1ywr_A	360	Crystal Structure Analysis Of Inactive P38 Kinase D		2e-09
3tg1_A	380	Crystal Structure Of P38alpha In Complex With A Map		2e-09
2y9q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		2e-09
1bmk_A	379	The Complex Structure Of The Map Kinase P38SB218655		2e-09
1wzy_A	368	Crystal Structure Of Human Erk2 Complexed With A Py		2e-09
1tvo_A	368	The Structure Of Erk2 In Complex With A Small Molec		2e-09
3zu7_A	365	Crystal Structure Of A Designed Selected Ankyrin Re		2e-09
2z7l_A	366	Unphosphorylated Mitogen Activated Protein Kinase E		2e-09
3c9w_A	357	Crystal Structure Of Erk-2 With Hypothemycin Covale		2e-09
2fys_B	364	Crystal Structure Of Erk2 Complex With Kim Peptide		2e-09
3o71_A	358	Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length		2e-09
3eb0_A	383	Crystal Structure Of Cgd4_240 From Cryptosporidium		2e-09
4fv6_A	360	Crystal Structure Of The Erk2 Complexed With E57 Le		2e-09
1gol_A	364	Coordinates Of Rat Map Kinase Erk2 With An Arginine		2e-09
3e92_A	371	Crystal Structure Of P38 Kinase In Complex With A B		2e-09
2oza_B	366	Structure Of P38alpha Complex Length = 366		2e-09
3d83_A	360	Crystal Structure Of P38 Kinase In Complex With A B		2e-09
1lew_A	360	Crystal Structure Of Map Kinase P38 Complexed To Th		2e-09
2puu_A	348	Crystal Structure Of P38 Complex With 1-(5-Tert-But		2e-09
3p4k_A	370	The Third Conformation Of P38a Map Kinase Observed		2e-09
2gph_A	364	Docking Motif Interactions In The Map Kinase Erk2 L		2e-09
2gtm_A	348	Mutated Mouse P38 Map Kinase Domain In Complex With		2e-09
2bal_A	365	P38alpha Map Kinase Bound To Pyrazoloamine Length =		2e-09
2baq_A	365	P38alpha Bound To Ro3201195 Length = 365		2e-09
1ove_A	366	The Structure Of P38 Alpha In Complex With A Dihydr		2e-09
3rp9_A	458	Crystal Structure Of The Apo Mapk From Toxoplasma G		2e-09
3gp0_A	348	Crystal Structure Of Human Mitogen Activated Protei		2e-09
2y8o_A	362	Crystal Structure Of Human P38alpha Complexed With		2e-09
1ian_A	366	Human P38 Map Kinase Inhibitor Complex Length = 366		3e-09
3nnx_A	354	Crystal Structure Of Phosphorylated P38 Alpha In Co		3e-09
3kq7_A	380	Structure Of Human P38alpha With N-[4-Methyl-3-(6-{		3e-09
3mpt_A	371	Crystal Structure Of P38 Kinase In Complex With A P		3e-09
1bl6_A	379	The Complex Structure Of The Map Kinase P38SB216995		3e-09
3dt1_A	383	P38 Complexed With A Quinazoline Inhibitor Length =		3e-09
3fi4_A	372	P38 Kinase Crystal Structure In Complex With Ro4499		3e-09
3k3i_A	350	P38alpha Bound To Novel Dgf-Out Compound Pf-0021595		3e-09
1m7q_A	366	Crystal Structure Of P38 Map Kinase In Complex With		3e-09
3zsg_A	362	X-Ray Structure Of P38alpha Bound To Tak-715 Length		3e-09
1oz1_A	372	P38 Mitogen-Activated Kinase In Complex With 4-Azai		3e-09
2gfs_A	372	P38 Kinase Crystal Structure In Complex With Ro3201		3e-09
3gcu_A	360	Human P38 Map Kinase In Complex With Rl48 Length =		3e-09
3s3i_A	349	P38 Kinase Crystal Structure In Complex With Small		3e-09
3k3j_A	362	P38alpha Bound To Novel Dfg-Out Compound Pf-0041612		3e-09
3d7z_A	360	Crystal Structure Of P38 Kinase In Complex With A B		3e-09
3hvc_A	362	Crystal Structure Of Human P38alpha Map Kinase Leng		3e-09
3hec_A	348	P38 In Complex With Imatinib Length = 348		3e-09
4ewq_A	383	Human P38 Alpha Mapk In Complex With A Pyridazine B		3e-09
2npq_A	367	A Novel Lipid Binding Site In The P38 Alpha Map Kin		3e-09
2xrw_A	371	Linear Binding Motifs For Jnk And For Calcineurin A		3e-09
3ody_X	360	Crystal Structure Of P38alpha Y323q Active Mutant L		3e-09
2lgc_A	359	Joint Nmr And X-Ray Refinement Reveals The Structur		3e-09
2baj_A	365	P38alpha Bound To Pyrazolourea Length = 365		3e-09
3hrb_A	359	P38 Kinase Crystal Structure In Complex With Small		3e-09
1zzl_A	351	Crystal Structure Of P38 With Triazolopyridine Leng		3e-09
3od6_X	360	Crystal Structure Of P38alpha Y323t Active Mutant L		3e-09
3nnu_A	354	Crystal Structure Of P38 Alpha In Complex With Dp13		3e-09
1di9_A	360	The Structure Of P38 Mitogen-Activated Protein Kina		3e-09
3odz_X	360	Crystal Structure Of P38alpha Y323r Active Mutant L		3e-09
1ukh_A	369	Structural Basis For The Selective Inhibition Of Jn		4e-09
3oef_X	360	Crystal Structure Of Y323f Inactive Mutant Of P38al		4e-09
2xs0_A	386	Linear Binding Motifs For Jnk And For Calcineurin A		4e-09
3vum_A	370	Crystal Structure Of A Cysteine-deficient Mutant M7		4e-09
3o17_A	370	Crystal Structure Of Jnk1-Alpha1 Isoform Length = 3		5e-09
3vul_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		5e-09
2g01_A	370	Pyrazoloquinolones As Novel, Selective Jnk1 Inhibit		5e-09
3r63_A	358	Structure Of Erk2 (Spe) Mutant (S246e) Length = 358		6e-09
2fst_X	367	Mitogen Activated Protein Kinase P38alpha (d176a+f3		6e-09
2fsl_X	367	Mitogen Activated Protein Kinase P38alpha (D176a+f3		6e-09
2fso_X	367	Mitogen Activated Protein Kinase P38alpha (D176a) A		7e-09
3mh2_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		7e-09
3gcp_A	360	Human P38 Map Kinase In Complex With Sb203580 Lengt		9e-09
3nup_A	307	Cdk6 (Monomeric) In Complex With Inhibitor Length =		2e-08
2qkr_A	313	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		2e-08
1bi8_A	326	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-08
3elj_A	369	Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine		2e-08
1jow_B	308	Crystal Structure Of A Complex Of Human Cdk6 And A		2e-08
3niz_A	311	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		2e-08
3o8p_A	360	Conformational Plasticity Of P38 Map Kinase Dfg Mot		2e-08
3pze_A	358	Jnk1 In Complex With Inhibitor Length = 358		3e-08
4e7w_A	394	Structure Of Gsk3 From Ustilago Maydis Length = 394		3e-08
3gi3_A	360	Crystal Structure Of A N-Phenyl-N'-Naphthylurea Ana		3e-08
3mh0_A	360	Mutagenesis Of P38 Map Kinase Eshtablishes Key Role		3e-08
4fg9_A	320	Crystal Structure Of Human Calcium/calmodulin-depen		4e-08
4fg9_A	320	Crystal Structure Of Human Calcium/calmodulin-depen		7e-04
4fg8_A	315	Crystal Structure Of Human Calcium/calmodulin-depen		4e-08
4fg8_A	315	Crystal Structure Of Human Calcium/calmodulin-depen		6e-04
1a06_A	332	Calmodulin-Dependent Protein Kinase From Rat Length		4e-08
1a06_A	332	Calmodulin-Dependent Protein Kinase From Rat Length		7e-04
4fg7_A	293	Crystal Structure Of Human Calcium/calmodulin-depen		4e-08
3mh1_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		4e-08
3mh3_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		5e-08
2izr_A	330	Structure Of Casein Kinase Gamma 3 In Complex With		6e-08
2chl_A	351	Structure Of Casein Kinase 1 Gamma 3 Length = 351		6e-08
3mtl_A	324	Crystal Structure Of The Pctaire1 Kinase In Complex		8e-08
4hgl_A	330	Crystal Structure Of Ck1g3 With Compound 1 Length =		8e-08
2w96_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		9e-08
2w96_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		1e-07
2i6l_A	320	Crystal Structure Of Human Mitogen Activated Protei		9e-08
2w99_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		9e-08
2w99_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		1e-07
2w9f_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		9e-08
2w9f_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		2e-07
2ycr_A	323	Crystal Structure Of Checkpoint Kinase 2 In Complex		1e-07
3is5_A	285	Crystal Structure Of Cdpk Kinase Domain From Toxopl		1e-07
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		1e-07
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		3e-04
2w0j_A	323	Crystal Structure Of Chk2 In Complex With Nsc 10955		1e-07
2cn5_A	329	Crystal Structure Of Human Chk2 In Complex With Adp		1e-07
2ycf_A	322	Crystal Structure Of Checkpoint Kinase 2 In Complex		1e-07
2xk9_A	322	Structural Analysis Of Checkpoint Kinase 2 (Chk2) I		1e-07
3g33_A	308	Crystal Structure Of Cdk4CYCLIN D3 Length = 308		1e-07
3dae_A	283	Crystal Structure Of Phosphorylated Snf1 Kinase Dom		3e-07
3hyh_A	275	Crystal Structure Of The Protein Kinase Domain Of Y		3e-07
3mn3_A	271	An Inhibited Conformation For The Protein Kinase Do		3e-07
2fh9_A	274	Structure And Dimerization Of The Kinase Domain Fro		4e-07
3i6u_A	419	Structure And Activation Mechanism Of The Chk2 Dna-		4e-07
3hx4_A	508	Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tg		4e-07
3ku2_A	507	Crystal Structure Of Inactivated Form Of Cdpk1 From		4e-07
2jc6_A	334	Crystal Structure Of Human Calmodulin-Dependent Pro		5e-07
3q5i_A	504	Crystal Structure Of Pbanka_031420 Length = 504		5e-07
3i6w_A	443	Structure And Activation Mechanism Of The Chk2 Dna-		5e-07
3n9x_A	432	Crystal Structure Of Map Kinase From Plasmodium Ber		6e-07
3uys_A	296	Crystal Structure Of Apo Human Ck1d Length = 296		6e-07
1ckj_A	317	Casein Kinase I Delta Truncation Mutant Containing		6e-07
3i79_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		6e-07
2zv2_A	298	Crystal Structure Of Human CalciumCALMODULIN-Depend		8e-07
3nie_A	429	Crystal Structure Of Pf11_0147 Length = 429		8e-07
2cmw_A	310	Structure Of Human Casein Kinase 1 Gamma-1 In Compl		9e-07
3hzt_A	467	Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme4		9e-07
4eon_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		9e-07
3fpq_A	290	Crystal Structure Of The Kinase Domain Of Wnk1 Leng		1e-06
4eoo_A	299	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		1e-06
4eop_A	300	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		1e-06
4eom_A	301	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		1e-06
3ma6_A	298	Crystal Structure Of Kinase Domain Of Tgcdpk1 In Pr		1e-06
4eoi_A	299	Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyc		1e-06
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		1e-06
1vyw_A	309	Structure Of Cdk2CYCLIN A WITH PNU-292137 Length =		1e-06
1vyw_A	309	Structure Of Cdk2CYCLIN A WITH PNU-292137 Length =		2e-06
3lm0_A	327	Crystal Structure Of Human SerineTHREONINE KINASE 1		1e-06
3lm0_A	327	Crystal Structure Of Human SerineTHREONINE KINASE 1		4e-05
2c47_A	313	Structure Of Casein Kinase 1 Gamma 2 Length = 313		1e-06
3sv0_A	483	Crystal Structure Of Casein Kinase-1 Like Protein I		1e-06
2z7q_A	321	Crystal Structure Of The N-Terminal Kinase Domain O		2e-06
4erw_A	306	Cdk2 In Complex With Staurosporine Length = 306		2e-06
3dxn_A	287	Crystal Structure Of The Calcium-dependent Kinase F		2e-06
1gz8_A	299	Human Cyclin Dependent Kinase 2 Complexed With The		2e-06
3ezr_A	300	Cdk-2 With Indazole Inhibitor 17 Bound At Its Activ		2e-06
1oir_A	299	Imidazopyridines: A Potent And Selective Class Of C		2e-06
1h01_A	298	Cdk2 In Complex With A Disubstituted 2, 4-Bis Anili		2e-06
1gii_A	298	Human Cyclin Dependent Kinase 2 Complexed With The		2e-06
3pxf_A	306	Cdk2 In Complex With Two Molecules Of 8-Anilino-1-N		2e-06
3pj8_A	299	Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]		2e-06
4i3z_A	296	Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES		2e-06
2iw6_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A Com		2e-06
1oit_A	299	Imidazopyridines: A Potent And Selective Class Of C		2e-06
3e3p_A	360	Glycogen Synthase Kinase From Leishmania Major Leng		2e-06
1pf8_A	298	Crystal Structure Of Human Cyclin-dependent Kinase		2e-06
3qhr_A	298	Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic		2e-06
2w17_A	299	Cdk2 In Complex With The Imidazole Pyrimidine Amide		2e-06
1fin_A	298	Cyclin A-Cyclin-Dependent Kinase 2 Complex Length =		2e-06
2jgz_A	289	Crystal Structure Of Phospho-Cdk2 In Complex With C		2e-06
1ogu_A	302	Structure Of Human Thr160-phospho Cdk2/cyclin A Com		2e-06
1h1p_A	303	Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMP		2e-06
1ob3_A	288	Structure Of P. Falciparum Pfpk5 Length = 288		2e-06
2iw8_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82		2e-06
1w98_A	298	The Structural Basis Of Cdk2 Activation By Cyclin E		2e-06
4eok_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		2e-06
4eoj_A	302	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		2e-06
3bht_A	300	Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN		2e-06
1jst_A	298	Phosphorylated Cyclin-Dependent Kinase-2 Bound To C		2e-06
4eos_A	300	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		2e-06
1e9h_A	297	Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex		2e-06
4eoq_A	301	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		2e-06
4bcq_A	301	Structure Of Cdk2 In Complex With Cyclin A And A 2-		2e-06
2f9g_A	353	Crystal Structure Of Fus3 Phosphorylated On Tyr182		3e-06
1qmz_A	299	Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com		3e-06
3i7c_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		3e-06
2b9f_A	353	Crystal Structure Of Non-Phosphorylated Fus3 Length		4e-06
1v0o_A	288	Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulpho		4e-06
2x7f_A	326	Crystal Structure Of The Kinase Domain Of Human Tra		4e-06
4hni_A	296	Crystal Structure Of Ck1e In Complex With Pf4800567		4e-06
4b99_A	398	Crystal Structure Of Mapk7 (Erk5) With Inhibitor Le		5e-06
1v0b_A	288	Crystal Structure Of The T198a Mutant Of Pfpk5 Leng		5e-06
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		5e-06
3gbz_A	329	Structure Of The Cmgc Cdk Kinase From Giardia Lambl		5e-06
2gnf_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		5e-06
4aaa_A	331	Crystal Structure Of The Human Cdkl2 Kinase Domain		5e-06
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		5e-06
2gng_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		5e-06
2gnj_A	350	Pka Three Fold Mutant Model Of Rho-Kinase With Y-27		5e-06
1phk_A	298	Two Structures Of The Catalytic Domain Of Phosphory		5e-06
4ic7_A	442	Crystal Structure Of The Erk5 Kinase Domain In Comp		6e-06
2b9h_A	353	Crystal Structure Of Fus3 With A Docking Motif From		6e-06
3ama_A	351	Protein Kinase A Sixfold Mutant Model Of Aurora B W		6e-06
3ggf_A	301	Crystal Structure Of Human SerineTHREONINE-Protein		6e-06
2phk_A	277	The Crystal Structure Of A Phosphorylase Kinase Pep		6e-06
3igo_A	486	Crystal Structure Of Cryptosporidium Parvum Cdpk1,		6e-06
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		8e-06
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		3e-05
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		9e-06
1szm_A	350	Dual Binding Mode Of Bisindolylmaleimide 2 To Prote		9e-06
3l9m_A	351	Crystal Structure Of Pkab3 (Pka Triple Mutant V123a		9e-06
1q61_A	350	Pka Triple Mutant Model Of Pkb Length = 350		9e-06
2jdt_A	351	Structure Of Pka-Pkb Chimera Complexed With Isoquin		9e-06
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		9e-06
2vo0_A	351	Structure Of Pka-Pkb Chimera Complexed With C-(4-(4		9e-06
2uvy_A	351	Structure Of Pka-pkb Chimera Complexed With Methyl-		9e-06
2jam_A	304	Crystal Structure Of Human Calmodulin-Dependent Pro		1e-05
1j3h_A	350	Crystal Structure Of Apoenzyme Camp-Dependent Prote		1e-05
1xh9_A	350	Crystal Structures Of Protein Kinase B Selective In		1e-05
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		1e-05
3fhi_A	350	Crystal Structure Of A Complex Between The Catalyti		1e-05
3mvj_A	371	Human Cyclic Amp-Dependent Protein Kinase Pka Inhib		1e-05
4dg3_E	371	Crystal Structure Of R336a Mutant Of Camp-dependent		1e-05
3g51_A	325	Structural Diversity Of The Active Conformation Of		1e-05
2uzt_A	336	Pka Structures Of Akt, Indazole-Pyridine Inhibitors		1e-05
3agl_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		1e-05
3agm_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		1e-05
1svh_A	350	Crystal Structure Of Protein Kinase A In Complex Wi		1e-05
1q8w_A	350	The Catalytic Subunit Of Camp-Dependent Protein Kin		1e-05
4ae6_A	343	Structure And Function Of The Human Sperm-specific		1e-05
3dnd_A	350	Camp-Dependent Protein Kinase Pka Catalytic Subunit		1e-05
1stc_E	350	Camp-Dependent Protein Kinase, Alpha-Catalytic Subu		1e-05
1xh7_A	350	Crystal Structures Of Protein Kinase B Selective In		1e-05
1ctp_E	350	Structure Of The Mammalian Catalytic Subunit Of Cam		1e-05
1cdk_A	350	Camp-Dependent Protein Kinase Catalytic Subunit (E.		1e-05
2jds_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		1e-05
2c1a_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		1e-05
3nx8_A	351	Human Camp Dependent Protein Kinase In Complex With		1e-05
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		1e-05
1l3r_E	350	Crystal Structure Of A Transition State Mimic Of Th		1e-05
1cmk_E	350	Crystal Structures Of The Myristylated Catalytic Su		1e-05
3pvb_A	345	Crystal Structure Of (73-244)ria:c Holoenzyme Of Ca		1e-05
4ae9_A	343	Structure And Function Of The Human Sperm-specific		1e-05
2qur_A	350	Crystal Structure Of F327aK285P MUTANT OF CAMP-Depe		1e-05
2f7e_E	351	Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoqu		1e-05
1jbp_E	350	Crystal Structure Of The Catalytic Subunit Of Camp-		1e-05
1h4l_A	292	Structure And Regulation Of The Cdk5-P25(Nck5a) Com		1e-05
2qcs_A	350	A Complex Structure Between The Catalytic And Regul		1e-05
1bkx_A	350	A Binary Complex Of The Catalytic Subunit Of Camp-D		1e-05
1ydt_E	350	Structure Of Camp-Dependent Protein Kinase, Alpha-C		1e-05
3qal_E	350	Crystal Structure Of Arg280ala Mutant Of Catalytic		1e-05
2erz_E	351	Crystal Structure Of C-amp Dependent Kinase (pka) B		1e-05
1fmo_E	350	Crystal Structure Of A Polyhistidine-Tagged Recombi		1e-05
1apm_E	350	2.0 Angstrom Refined Crystal Structure Of The Catal		1e-05
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		1e-05
2gu8_A	337	Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel		1e-05
2jfl_A	325	Crystal Structure Of Human Ste20-Like Kinase ( Diph		1e-05
2jfm_A	325	Crystal Structure Of Human Ste20-Like Kinase (Unlig		1e-05
2j51_A	325	Crystal Structure Of Human Ste20-Like Kinase Bound		1e-05
4dfx_E	350	Crystal Structure Of Myristoylated K7c Catalytic Su		2e-05
4dfy_A	371	Crystal Structure Of R194a Mutant Of Camp-Dependent		2e-05
2wei_A	287	Crystal Structure Of The Kinase Domain Of Cryptospo		2e-05
3dfa_A	286	Crystal Structure Of Kinase Domain Of Calcium-depen		2e-05
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		2e-05
3h4j_B	336	Crystal Structure Of Pombe Ampk Kdaid Fragment Leng		2e-05
1q24_A	350	Pka Double Mutant Model Of Pkb In Complex With Mgat		2e-05
1ql6_A	298	The Catalytic Mechanism Of Phosphorylase Kinase Pro		2e-05
4bc6_A	293	Crystal Structure Of Human Serine Threonine Kinase-		2e-05
2j7t_A	302	Crystal Structure Of Human Serine Threonine Kinase-		2e-05
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		2e-05
1smh_A	350	Protein Kinase A Variant Complex With Completely Or		3e-05
3f69_A	311	Crystal Structure Of The Mycobacterium Tuberculosis		3e-05
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		3e-05
1na7_A	329	Crystal Structure Of The Catalytic Subunit Of Human		3e-05
3pg1_A	362	Map Kinase Lmampk10 From Leishmania Major (1.95 Ang		3e-05
1ung_A	292	Structural Mechanism For The Inhibition Of Cdk5-P25		3e-05
3uib_A	362	Map Kinase Lmampk10 From Leishmania Major In Comple		3e-05
1syk_A	350	Crystal Structure Of E230q Mutant Of Camp-Dependent		3e-05
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		3e-05
3qa8_A	676	Crystal Structure Of Inhibitor Of Kappa B Kinase Be		3e-05
3d5v_A	317	Crystal Structure Of An Activated (Thr->asp) Polo-L		3e-05
3db6_A	301	Crystal Structure Of An Activated (Thr->asp) Polo-L		3e-05
3rzf_A	677	Crystal Structure Of Inhibitor Of Kappab Kinase Bet		3e-05
3d5u_A	317	Crystal Structure Of A Wildtype Polo-Like Kinase 1		4e-05
3d5w_A	317	Crystal Structure Of A Phosphorylated Polo-Like Kin		4e-05
3o96_A	446	Crystal Structure Of Human Akt1 With An Allosteric		4e-05
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		4e-05
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		4e-05
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		4e-05
4ejn_A	446	Crystal Structure Of Autoinhibited Form Of Akt1 In		4e-05
1yhv_A	297	Crystal Structure Of Pak1 Kinase Domain With Two Po		4e-05
1yhv_A	297	Crystal Structure Of Pak1 Kinase Domain With Two Po		3e-04
3f61_A	311	Crystal Structure Of M. Tuberculosis Pknb Leu33aspV		4e-05
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		4e-05
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		7e-04
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		4e-05
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		6e-04
3ori_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain L33d		4e-05
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		4e-05
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		7e-04
3cqu_A	342	Crystal Structure Of Akt-1 Complexed With Substrate		5e-05
3cqu_A	342	Crystal Structure Of Akt-1 Complexed With Substrate		3e-04
3o7l_B	350	Crystal Structure Of Phospholamban (1-19):pka C-Sub		5e-05
4gv1_A	340	Pkb Alpha In Complex With Azd5363 Length = 340		5e-05
4gv1_A	340	Pkb Alpha In Complex With Azd5363 Length = 340		3e-04
2y0a_A	326	Structure Of Dapk1 Construct Residues 1-304 Length		5e-05
3ocb_A	341	Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor		5e-05
3ocb_A	341	Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor		3e-04
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		5e-05
1mru_A	311	Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob		5e-05
4ec8_A	373	Structure Of Full Length Cdk9 In Complex With Cycli		5e-05
4agu_A	311	Crystal Structure Of The Human Cdkl1 Kinase Domain		5e-05
1o6y_A	299	Catalytic Domain Of Pknb Kinase From Mycobacterium		6e-05
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		6e-05
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		6e-05
3zhp_C	294	Human Mst3 (stk24) In Complex With Mo25beta Length		6e-05
3a7f_A	303	Human Mst3 Kinase Length = 303		6e-05
2c30_A	321	Crystal Structure Of The Human P21-Activated Kinase		7e-05
2c30_A	321	Crystal Structure Of The Human P21-Activated Kinase		5e-04
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		7e-05
3cok_A	278	Crystal Structure Of Plk4 Kinase Length = 278		7e-05
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		7e-05
3qam_E	350	Crystal Structure Of Glu208ala Mutant Of Catalytic		7e-05
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		7e-05
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		7e-05
2xzs_A	312	Death Associated Protein Kinase 1 Residues 1-312 Le		7e-05
2w4k_A	302	X-Ray Structure Of A Dap-Kinase 2-302 Length = 302		7e-05
3ckx_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		8e-05
3ckw_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		8e-05
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		8e-05
3mi9_A	351	Crystal Structure Of Hiv-1 Tat Complexed With Human		8e-05
3blh_A	331	Crystal Structure Of Human Cdk9CYCLINT1 Length = 33		8e-05
2vwi_A	303	Structure Of The Osr1 Kinase, A Hypertension Drug T		8e-05
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		9e-05
2xik_A	294	Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related K		9e-05
2xik_A	294	Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related K		5e-04
2uv2_A	287	Crystal Structure Of Human Ste20-Like Kinase Bound		9e-05
2ou7_A	335	Structure Of The Catalytic Domain Of Human Polo-Lik		9e-05
1kob_A	387	Twitchin Kinase Fragment (Aplysia), Autoregulated P		1e-04
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		1e-04
2yac_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		1e-04
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		1e-04
3dak_A	290	Crystal Structure Of Domain-Swapped Osr1 Kinase Dom		1e-04
4afj_A	367	5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selec		1e-04
3thb_A	333	Structure Of Plk1 Kinase Domain In Complex With A B		1e-04
3kb7_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		1e-04
2v5q_A	315	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-04
1gng_A	378	Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With		1e-04
3zrk_A	371	Identification Of 2-(4-Pyridyl)thienopyridinones As		1e-04
2ow3_A	352	Glycogen Synthase Kinase-3 Beta In Complex With Bis		1e-04
3zdi_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		1e-04
1o9u_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		1e-04
3gb2_A	353	Gsk3beta Inhibitor Complex Length = 353		1e-04
3f88_A	349	Glycogen Synthase Kinase 3beta Inhibitor Complex Le		1e-04
3f7z_A	350	X-ray Co-crystal Structure Of Glycogen Synthase Kin		1e-04
2x0g_A	334	X-ray Structure Of A Dap-kinase Calmodulin Complex		1e-04
4dit_A	382	Crystal Structure Of Gsk3beta In Complex With A Imi		1e-04
3say_A	430	Crystal Structure Of Human Glycogen Synthase Kinase		1e-04
2yak_A	285	Structure Of Death-Associated Protein Kinase 1 (Dap		1e-04
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		1e-04
2f57_A	317	Crystal Structure Of The Human P21-activated Kinase		1e-04
2rku_A	294	Structure Of Plk1 In Complex With Bi2536 Length = 2		1e-04
3q4z_A	306	Structure Of Unphosphorylated Pak1 Kinase Domain Le		1e-04
3q4z_A	306	Structure Of Unphosphorylated Pak1 Kinase Domain Le		6e-04
1r0e_A	391	Glycogen Synthase Kinase-3 Beta In Complex With 3-I		1e-04
4bcf_A	331	Structure Of Cdk9 In Complex With Cyclin T And A 2-		1e-04
1uv5_A	350	Glycogen Synthase Kinase 3 Beta Complexed With 6-Br		1e-04
3sd0_A	350	Identification Of A Glycogen Synthase Kinase-3b Inh		1e-04
3gu8_A	295	Crystal Structure Of Dapkl93g With N6-Cyclopentylad		1e-04
2o5k_A	372	Crystal Structure Of Gsk3beta In Complex With A Ben		1e-04
3dfc_B	295	Crystal Structure Of A Glycine-Rich Loop Mutant Of		1e-04
4acc_A	465	Gsk3b In Complex With Inhibitor Length = 465		1e-04
3gu4_A	295	Crystal Structure Of Dapkq23v-Amppnp Length = 295		1e-04
1h8f_A	352	Glycogen Synthase Kinase 3 Beta. Length = 352		1e-04
3f5u_A	295	Crystal Structure Of The Death Associated Protein K		1e-04
1q3d_A	424	Gsk-3 Beta Complexed With Staurosporine Length = 42		2e-04
1rdq_E	350	Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of		2e-04
1q5k_A	414	Crystal Structure Of Glycogen Synthase Kinase 3 In		2e-04
1p4f_A	293	Death Associated Protein Kinase Catalytic Domain Wi		2e-04
2a27_A	321	Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal		2e-04
1pyx_A	422	Gsk-3 Beta Complexed With Amp-Pnp Length = 422		2e-04
1z9x_A	321	Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal		2e-04
1ig1_A	294	1.8a X-Ray Structure Of Ternary Complex Of A Cataly		2e-04
1zws_A	288	Crystal Structure Of The Catalytic Domain Of Human		2e-04
1i09_A	420	Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Len		2e-04
2a2a_A	321	High-resolution Crystallographic Analysis Of The Au		2e-04
1wmk_A	321	Human Death-Associated Kinase Drp-1, Mutant S308d D		2e-04
3a4o_X	286	Lyn Kinase Domain Length = 286		2e-04
2x4f_A	373	The Crystal Structure Of The Human Myosin Light Cha		2e-04
1wvw_A	278	Crystal Structures Of Kinase Domain Of Dap Kinase I		2e-04
2w4j_A	277	X-Ray Structure Of A Dap-Kinase 2-277 Length = 277		2e-04
2clq_A	295	Structure Of Mitogen-Activated Protein Kinase Kinas		2e-04
2xuu_A	334	Crystal Structure Of A Dap-Kinase 1 Mutant Length =		2e-04
2xuu_A	334	Crystal Structure Of A Dap-Kinase 1 Mutant Length =		3e-04
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		2e-04
3vw6_A	269	Crystal Structure Of Human Apoptosis Signal-Regulat		3e-04
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		3e-04
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		3e-04
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		3e-04
2yza_A	276	Crystal Structure Of Kinase Domain Of Human 5'-Amp-		3e-04
2h6d_A	276	Protein Kinase Domain Of The Human 5'-Amp-Activated		3e-04
2hw6_A	307	Crystal Structure Of Mnk1 Catalytic Domain Length =		4e-04
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		4e-04
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		4e-04
2ya9_A	361	Crystal Structure Of The Autoinhibited Form Of Mous		4e-04
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		4e-04
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		4e-04
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		4e-04
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		4e-04
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		4e-04
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		4e-04
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		4e-04
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		4e-04
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		4e-04
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		4e-04
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		4e-04
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		4e-04
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		4e-04
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		4e-04
3orm_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain D76a		5e-04
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		5e-04
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		5e-04
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		5e-04
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		5e-04
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		8e-04
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		8e-04
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		8e-04
2pzi_A	681	Crystal Structure Of Protein Kinase Pkng From Mycob		9e-04

>pdb|3BEG|A Chain A, Crystal Structure Of Sr Protein Kinase 1 Complexed To Its Substrate AsfSF2 Length = 381

Iteration: 1
 Score =  356 bits (913), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 185/407 (45%), Positives = 254/407 (62%), Gaps = 40/407 (9%)
Query: 19  YRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQA 78
           Y KGGYH V++GDLFNG RY   RKLGWG FS VWL++D +   +VA+K+ KSA  + + 
Sbjct: 5   YCKGGYHLVKIGDLFNG-RYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTET 63
Query: 79  ALHEIEVLSAVADGDPS--NEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSR 136
           AL EI +L +V + DP+  N + V++L+D FK +G NG H+CMV E LG  LL+ I  S 
Sbjct: 64  ALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWIIKSN 123
Query: 137 YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVST-------IDPSKDPIR 189
           Y+GL L  V++I + +L GLDYLH +  IIHTD+KPENILL             + +  R
Sbjct: 124 YQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLAAEATEWQR 183
Query: 190 SGLTPILERPEGSINGGSTSTMTIVEXXXXXXXXXXXXNISIRRASMGGIELPKPERCLD 249
           SG  P    P GS                          +S   A+ G   L  P    +
Sbjct: 184 SGAPP----PSGSA-------------------------VSTAPATAGNF-LVNPLEPKN 213
Query: 250 GIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATG 309
              ++ K+ D GNAC  +K F E+IQTRQYR+ EV++ +GY+   D+WS AC AFELATG
Sbjct: 214 AEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATG 273
Query: 310 DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWS 369
           D LF P SG+ +  DEDH+AL++EL+GK+PRK+ + G  SK++F + GDLK I +LK W 
Sbjct: 274 DYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWG 333
Query: 370 LDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
           L  +LV+KY +S+ +A  F +FL+P+L+  PEKR TA +CL+HPWL+
Sbjct: 334 LFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPWLN 380

>pdb|1WBP|A Chain A, Srpk1 Bound To 9mer Docking Motif Peptide Length = 397

Iteration: 1
 Score =  356 bits (913), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 185/407 (45%), Positives = 254/407 (62%), Gaps = 40/407 (9%)
Query: 19  YRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQA 78
           Y KGGYH V++GDLFNG RY   RKLGWG FS VWL++D +   +VA+K+ KSA  + + 
Sbjct: 21  YCKGGYHLVKIGDLFNG-RYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTET 79
Query: 79  ALHEIEVLSAVADGDPS--NEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSR 136
           AL EI +L +V + DP+  N + V++L+D FK +G NG H+CMV E LG  LL+ I  S 
Sbjct: 80  ALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWIIKSN 139
Query: 137 YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVST-------IDPSKDPIR 189
           Y+GL L  V++I + +L GLDYLH +  IIHTD+KPENILL             + +  R
Sbjct: 140 YQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLAAEATEWQR 199
Query: 190 SGLTPILERPEGSINGGSTSTMTIVEXXXXXXXXXXXXNISIRRASMGGIELPKPERCLD 249
           SG  P    P GS                          +S   A+ G   L  P    +
Sbjct: 200 SGAPP----PSGSA-------------------------VSTAPATAGNF-LVNPLEPKN 229
Query: 250 GIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATG 309
              ++ K+ D GNAC  +K F E+IQTRQYR+ EV++ +GY+   D+WS AC AFELATG
Sbjct: 230 AEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATG 289
Query: 310 DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWS 369
           D LF P SG+ +  DEDH+AL++EL+GK+PRK+ + G  SK++F + GDLK I +LK W 
Sbjct: 290 DYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWG 349
Query: 370 LDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
           L  +LV+KY +S+ +A  F +FL+P+L+  PEKR TA +CL+HPWL+
Sbjct: 350 LFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPWLN 396

>pdb|2X7G|A Chain A, Structure Of Human Serine-Arginine-Rich Protein-Specific Kinase 2 (Srpk2) Bound To Purvalanol B Length = 389

Iteration: 1
 Score =  345 bits (886), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 182/407 (44%), Positives = 249/407 (61%), Gaps = 42/407 (10%)
Query: 19  YRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQA 78
           Y KGGYH V++GDLFNG RY   RKLGWG FS VWL +D +   +VA+K+ KSA  + + 
Sbjct: 15  YCKGGYHPVKIGDLFNG-RYHVIRKLGWGHFSTVWLCWDMQGKRFVAMKVVKSAQHYTET 73
Query: 79  ALHEIEVLSAVADGDPS--NEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSR 136
           AL EI++L  V + DPS  N+  V++LID FK +G NG H+CMV E LG  LL+ I  S 
Sbjct: 74  ALDEIKLLKCVRESDPSDPNKDMVVQLIDDFKISGMNGIHVCMVFEVLGHHLLKWIIKSN 133
Query: 137 YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV-------STIDPSKDPIR 189
           Y+GL +  V+ I + +L GLDYLH +  IIHTD+KPENIL+             + +  +
Sbjct: 134 YQGLPVRCVKSIIRQVLQGLDYLHSKCKIIHTDIKPENILMCVDDAYVRRMAAEATEWQK 193
Query: 190 SGLTPILERPEGSINGGSTSTMTIVEXXXXXXXXXXXXNISIRRASMGGIELPKPERCLD 249
           +G  P    P GS    + +   +V                           P   R  D
Sbjct: 194 AGAPP----PSGSAVSTAPAADLLVN--------------------------PLDPRNAD 223
Query: 250 GIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATG 309
            I  R K+ D GNAC  +K F E+IQTRQYR+ EV++ AGYS   D+WS AC AFELATG
Sbjct: 224 KI--RVKIADLGNACWVHKHFTEDIQTRQYRSIEVLIGAGYSTPADIWSTACMAFELATG 281
Query: 310 DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWS 369
           D LF P SG+ +  DEDH+A ++EL+G +PR  A+ G  S+++F+R G+L+ I +LK WS
Sbjct: 282 DYLFEPHSGEDYSRDEDHIAHIIELLGSIPRHFALSGKYSREFFNRRGELRHITKLKPWS 341
Query: 370 LDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
           L  +LV+KY +   DA +F +FL+P+L+  PEKR +A +CL+HPWL+
Sbjct: 342 LFDVLVEKYGWPHEDAAQFTDFLIPMLEMVPEKRASAGECLRHPWLN 388

>pdb|1Q8Y|A Chain A, The Structure Of The Yeast Sr Protein Kinase, Sky1p, With Bound Adp Length = 373

Iteration: 1
 Score =  290 bits (742), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 152/402 (37%), Positives = 220/402 (54%), Gaps = 71/402 (17%)
Query: 19  YRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQA 78
           YR GGYH    G+ +   RYI  RKLGWG FS VWLA D   +++VA+KI +    + +A
Sbjct: 2   YRPGGYHPAFKGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEA 61
Query: 79  ALHEIEVLSAVADGDPSNEKC-----VIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIK 133
           A  EI++L  V D D + E       +++L+DHF H GPNG H+ MV E LG++LL LIK
Sbjct: 62  AEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIK 121
Query: 134 YSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT 193
              ++G+ L  V++I K +L GLDY+HR  GIIHTD+KPEN+L+                
Sbjct: 122 KYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLM---------------- 165
Query: 194 PILERPEGSINGGSTSTMTIVEXXXXXXXXXXXXNISIRRASMGGIELPKPERCLDGIDM 253
            I++ PE                            I I+ A +G                
Sbjct: 166 EIVDSPENL--------------------------IQIKIADLG---------------- 183
Query: 254 RCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLF 313
                   NAC  ++ +   IQTR+YR+PEV+L A +    D+WS AC  FEL TGD LF
Sbjct: 184 --------NACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLF 235
Query: 314 APKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRL 373
            P  G  + +D+DH+A ++EL+G++P  +   G  ++ +F+  G L+ I +LKFW L+ +
Sbjct: 236 EPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDV 295
Query: 374 LVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
           L +KY+FS+ +A+E ++FL P+L   P KR  A   + HPWL
Sbjct: 296 LTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWL 337

>pdb|1HOW|A Chain A, The X-Ray Crystal Structure Of Sky1p, An Sr Protein Kinase In Yeast Length = 373

Iteration: 1
 Score =  288 bits (738), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 151/402 (37%), Positives = 220/402 (54%), Gaps = 71/402 (17%)
Query: 19  YRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQA 78
           YR GG+H    G+ +   RYI  RKLGWG FS VWLA D   +++VA+KI +    + +A
Sbjct: 2   YRPGGFHPAFKGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEA 61
Query: 79  ALHEIEVLSAVADGDPSNEKC-----VIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIK 133
           A  EI++L  V D D + E       +++L+DHF H GPNG H+ MV E LG++LL LIK
Sbjct: 62  AEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIK 121
Query: 134 YSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT 193
              ++G+ L  V++I K +L GLDY+HR  GIIHTD+KPEN+L+                
Sbjct: 122 KYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLM---------------- 165
Query: 194 PILERPEGSINGGSTSTMTIVEXXXXXXXXXXXXNISIRRASMGGIELPKPERCLDGIDM 253
            I++ PE                            I I+ A +G                
Sbjct: 166 EIVDSPENL--------------------------IQIKIADLG---------------- 183
Query: 254 RCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLF 313
                   NAC  ++ +   IQTR+YR+PEV+L A +    D+WS AC  FEL TGD LF
Sbjct: 184 --------NACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLF 235
Query: 314 APKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRL 373
            P  G  + +D+DH+A ++EL+G++P  +   G  ++ +F+  G L+ I +LKFW L+ +
Sbjct: 236 EPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDV 295
Query: 374 LVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
           L +KY+FS+ +A+E ++FL P+L   P KR  A   + HPWL
Sbjct: 296 LTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWL 337

>pdb|3NR9|A Chain A, Structure Of Human Cdc2-Like Kinase 2 (Clk2) Length = 368

Iteration: 1
 Score =  133 bits (335), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 115/414 (27%), Positives = 177/414 (42%), Gaps = 81/414 (19%)
Query: 23  GYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTS-SYVALKIQKSAAQFAQAALH 81
           G+    VGD     RY     LG G F  V    D R   + VALKI K+  ++ +AA  
Sbjct: 21  GHLIYHVGDWLQE-RYEIVSTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEAARL 79
Query: 82  EIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLE 141
           EI VL  + + DP N+   +++ D F + G    H+C+  E LG S    +K + Y    
Sbjct: 80  EINVLEKINEKDPDNKNLCVQMFDWFDYHG----HMCISFELLGLSTFDFLKDNNYLPYP 135
Query: 142 LNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEG 201
           +++VR +   +   + +LH +  + HTDLKPENIL V++           LT  LE+   
Sbjct: 136 IHQVRHMAFQLCQAVKFLH-DNKLTHTDLKPENILFVNS--------DYELTYNLEKKRD 186
Query: 202 SINGGSTSTMTIVEXXXXXXXXXXXXNISIRRASMGGIELPKPERCLDGIDMRCKVVDFG 261
             +  ST+                                              +VVDFG
Sbjct: 187 ERSVKSTAV---------------------------------------------RVVDFG 201
Query: 262 NACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGF 321
           +A   ++  +  + TR YRAPEVIL  G+S   D+WS  C  FE   G  LF        
Sbjct: 202 SATFDHEHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGCIIFEYYVGFTLFQTH----- 256
Query: 322 CEDEDHLALMMELIGKMPRKIAIGGAQSKDYF-------DRHGDLKRIRRLKFWSLDRLL 374
            ++ +HLA+M  ++G +P ++ I   + + YF       D +    R  R     L R L
Sbjct: 257 -DNREHLAMMERILGPIPSRM-IRKTRKQKYFYRGRLDWDENTSAGRYVRENCKPLRRYL 314
Query: 375 VDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNK 428
             +      +  +  + +  +L++ P KR T  + LQHP+ +     R E  NK
Sbjct: 315 TSE----AEEHHQLFDLIESMLEYEPAKRLTLGEALQHPFFA---RLRAEPPNK 361

>pdb|1Z57|A Chain A, Crystal Structure Of Human Clk1 In Complex With 10z-Hymenialdisine Length = 339

Iteration: 1
 Score =  132 bits (333), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/407 (25%), Positives = 177/407 (43%), Gaps = 100/407 (24%)
Query: 30  GDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSS-YVALKIQKSAAQFAQAALHEIEVLSA 88
           GD+ +  RY     LG G F  V    D +    +VA+KI K+  ++ +AA  EI+VL  
Sbjct: 9   GDVLSA-RYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEH 67
Query: 89  VADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREI 148
           +   DP++    +++++ F+H G    H+C+V E LG S    IK + +    L+ +R++
Sbjct: 68  LNTTDPNSTFRCVQMLEWFEHHG----HICIVFELLGLSTYDFIKENGFLPFRLDHIRKM 123
Query: 149 CKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGST 208
              I   +++LH    + HTDLKPENIL V +             P ++R E ++     
Sbjct: 124 AYQICKSVNFLHSN-KLTHTDLKPENILFVQS------DYTEAYNPKIKRDERTL----- 171
Query: 209 STMTIVEXXXXXXXXXXXXNISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK 268
                                                     I+   KVVDFG+A   ++
Sbjct: 172 ------------------------------------------INPDIKVVDFGSATYDDE 189
Query: 269 QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHL 328
             +  + TR YRAPEVIL  G+S   D+WS  C   E   G  +F     +      +HL
Sbjct: 190 HHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSK------EHL 243
Query: 329 ALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKY----RFSETD 384
           A+M  ++G +P+ +                +++ R+ K++  DRL  D++    R+    
Sbjct: 244 AMMERILGPLPKHM----------------IQKTRKRKYFHHDRLDWDEHSSAGRYVSRA 287
Query: 385 AREFAEFLVP--------------LLDFTPEKRPTAQQCLQHPWLSL 417
            +   EF++               +L++ P KR T ++ L+HP+  L
Sbjct: 288 CKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALKHPFFDL 334

>pdb|2VAG|A Chain A, Crystal Structure Of Di-Phosphorylated Human Clk1 In Complex With A Novel Substituted Indole Inhibitor Length = 339

Iteration: 1
 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 176/407 (43%), Gaps = 100/407 (24%)
Query: 30  GDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSS-YVALKIQKSAAQFAQAALHEIEVLSA 88
           GD+ +  RY     LG G F  V    D +    +VA+KI K+  ++ +AA  EI+VL  
Sbjct: 9   GDVLSA-RYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEH 67
Query: 89  VADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREI 148
           +   DP++    +++++ F+H G    H+C+V E LG S    IK + +    L+ +R++
Sbjct: 68  LNTTDPNSTFRCVQMLEWFEHHG----HICIVFELLGLSTYDFIKENGFLPFRLDHIRKM 123
Query: 149 CKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGST 208
              I   +++LH    + HTDLKPENIL V +             P ++R E ++     
Sbjct: 124 AYQICKSVNFLHSN-KLTHTDLKPENILFVQS------DYTEAYNPKIKRDERTL----- 171
Query: 209 STMTIVEXXXXXXXXXXXXNISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK 268
                                                     I+   KVVDFG+A   ++
Sbjct: 172 ------------------------------------------INPDIKVVDFGSATYDDE 189
Query: 269 QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHL 328
             +  +  R YRAPEVIL  G+S   D+WS  C   E   G  +F     +      +HL
Sbjct: 190 HHSTLVXXRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSK------EHL 243
Query: 329 ALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKY----RFSETD 384
           A+M  ++G +P+ +                +++ R+ K++  DRL  D++    R+    
Sbjct: 244 AMMERILGPLPKHM----------------IQKTRKRKYFHHDRLDWDEHSSAGRYVSRA 287
Query: 385 AREFAEFLVP--------------LLDFTPEKRPTAQQCLQHPWLSL 417
            +   EF++               +L++ P KR T ++ L+HP+  L
Sbjct: 288 CKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALKHPFFDL 334

>pdb|3LLT|A Chain A, Crystal Structure Of Pf14_0431, Kinase Domain Length = 360

Iteration: 1
 Score =  126 bits (316), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 171/396 (43%), Gaps = 76/396 (19%)
Query: 30  GDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAV 89
           G L N   ++  RK+G G F  V L        Y A+K+ ++  ++ ++A  E ++L  +
Sbjct: 30  GMLLNNA-FLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYTRSAKIEADILKKI 88
Query: 90  ADGDPSNEKCVIRLIDHFKHAGP--NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVRE 147
            + D +N   V       K+ G      H+C++ E LG SL  +I  + Y G  +  ++ 
Sbjct: 89  QNDDINNNNIV-------KYHGKFMYYDHMCLIFEPLGPSLYEIITRNNYNGFHIEDIKL 141
Query: 148 ICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP-IRSGLTPILERPEGSINGG 206
            C  IL  L+YL R++ + HTDLKPENILL        DP     L  +    +G     
Sbjct: 142 YCIEILKALNYL-RKMSLTHTDLKPENILL-------DDPYFEKSLITVRRVTDGK---- 189
Query: 207 STSTMTIVEXXXXXXXXXXXXNISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA 266
                                 I I R    GI                K++DFG A   
Sbjct: 190 ---------------------KIQIYRTKSTGI----------------KLIDFGCATFK 212
Query: 267 NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDED 326
           +      I TRQYRAPEVIL  G+  S DMWSF C   EL TG +LF         E  +
Sbjct: 213 SDYHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTH------EHME 266
Query: 327 HLALMMELIGKMPRKIAIGGAQSK--DYFDRHGDLKRIRRLKFWSLDRL-----LVDKYR 379
           HLA+M  +I  +P+ +     ++    Y ++  +LK        S++ +      +  Y+
Sbjct: 267 HLAMMESIIQPIPKNMLYEATKTNGSKYVNK-DELKLAWPENASSINSIKHVKKCLPLYK 325
Query: 380 FSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
             + +   F +FL  +L   P  RP+  + L+H +L
Sbjct: 326 IIKHEL--FCDFLYSILQIDPTLRPSPAELLKHKFL 359

>pdb|2WU6|A Chain A, Crystal Structure Of The Human Clk3 In Complex With Dki Length = 381

Iteration: 1
 Score =  116 bits (290), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 108/418 (25%), Positives = 161/418 (38%), Gaps = 106/418 (25%)
Query: 21  KGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYD-TRTSSYVALKIQKSAAQFAQAA 79
           K G+   R+GD     RY     LG G F  V    D  R  S VALKI ++  ++ +AA
Sbjct: 37  KEGHLVCRIGDWLQE-RYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAA 95
Query: 80  LHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKG 139
             EI VL  + + D  N+   + + D F   G    H+C+  E LG +    +K + ++ 
Sbjct: 96  RLEINVLKKIKEKDKENKFLCVLMSDWFNFHG----HMCIAFELLGKNTFEFLKENNFQP 151
Query: 140 LELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERP 199
             L  VR +   +   L +LH E  + HTDLKPENIL V+                    
Sbjct: 152 YPLPHVRHMAYQLCHALRFLH-ENQLTHTDLKPENILFVN-------------------- 190
Query: 200 EGSINGGSTSTMTIVEXXXXXXXXXXXXNISIRRASMGGIELPKPERCLDGIDMRCKVVD 259
                    S    +             N SIR A                        D
Sbjct: 191 ---------SEFETLYNEHKSCEEKSVKNTSIRVA------------------------D 217
Query: 260 FGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQ 319
           FG+A   ++     + TR YR PEVIL  G++   D+WS  C  FE   G  LF      
Sbjct: 218 FGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTH--- 274
Query: 320 GFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYR 379
              E+ +HL +M +++G +P  +                + R R+ K++    L+ D+  
Sbjct: 275 ---ENREHLVMMEKILGPIPSHM----------------IHRTRKQKYFYKGGLVWDE-- 313
Query: 380 FSETDAREFAEFLVPL---------------------LDFTPEKRPTAQQCLQHPWLS 416
            + +D R   E   PL                     L+F P +R T  + L HP+ +
Sbjct: 314 -NSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALLHPFFA 370

>pdb|2EU9|A Chain A, Crystal Structure Of Clk3 Length = 355

Iteration: 1
 Score =  116 bits (290), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 108/418 (25%), Positives = 161/418 (38%), Gaps = 106/418 (25%)
Query: 21  KGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYD-TRTSSYVALKIQKSAAQFAQAA 79
           K G+   R+GD     RY     LG G F  V    D  R  S VALKI ++  ++ +AA
Sbjct: 5   KEGHLVCRIGDWLQE-RYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAA 63
Query: 80  LHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKG 139
             EI VL  + + D  N+   + + D F   G    H+C+  E LG +    +K + ++ 
Sbjct: 64  RLEINVLKKIKEKDKENKFLCVLMSDWFNFHG----HMCIAFELLGKNTFEFLKENNFQP 119
Query: 140 LELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERP 199
             L  VR +   +   L +LH E  + HTDLKPENIL V+                    
Sbjct: 120 YPLPHVRHMAYQLCHALRFLH-ENQLTHTDLKPENILFVN-------------------- 158
Query: 200 EGSINGGSTSTMTIVEXXXXXXXXXXXXNISIRRASMGGIELPKPERCLDGIDMRCKVVD 259
                    S    +             N SIR A                        D
Sbjct: 159 ---------SEFETLYNEHKSCEEKSVKNTSIRVA------------------------D 185
Query: 260 FGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQ 319
           FG+A   ++     + TR YR PEVIL  G++   D+WS  C  FE   G  LF      
Sbjct: 186 FGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTH--- 242
Query: 320 GFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYR 379
              E+ +HL +M +++G +P  +                + R R+ K++    L+ D+  
Sbjct: 243 ---ENREHLVMMEKILGPIPSHM----------------IHRTRKQKYFYKGGLVWDE-- 281
Query: 380 FSETDAREFAEFLVPL---------------------LDFTPEKRPTAQQCLQHPWLS 416
            + +D R   E   PL                     L+F P +R T  + L HP+ +
Sbjct: 282 -NSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALLHPFFA 338

>pdb|2EXE|A Chain A, Crystal Structure Of The Phosphorylated Clk3 Length = 357

Iteration: 1
 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 108/418 (25%), Positives = 161/418 (38%), Gaps = 106/418 (25%)
Query: 21  KGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYD-TRTSSYVALKIQKSAAQFAQAA 79
           K G+   R+GD     RY     LG G F  V    D  R  S VALKI ++  ++ +AA
Sbjct: 14  KEGHLVCRIGDWLQE-RYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAA 72
Query: 80  LHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKG 139
             EI VL  + + D  N+   + + D F   G    H+C+  E LG +    +K + ++ 
Sbjct: 73  RLEINVLKKIKEKDKENKFLCVLMSDWFNFHG----HMCIAFELLGKNTFEFLKENNFQP 128
Query: 140 LELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERP 199
             L  VR +   +   L +LH E  + HTDLKPENIL V+                    
Sbjct: 129 YPLPHVRHMAYQLCHALRFLH-ENQLTHTDLKPENILFVN-------------------- 167
Query: 200 EGSINGGSTSTMTIVEXXXXXXXXXXXXNISIRRASMGGIELPKPERCLDGIDMRCKVVD 259
                    S    +             N SIR A                        D
Sbjct: 168 ---------SEFETLYNEHKSCEEKSVKNTSIRVA------------------------D 194
Query: 260 FGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQ 319
           FG+A   ++     + TR YR PEVIL  G++   D+WS  C  FE   G  LF      
Sbjct: 195 FGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTH--- 251
Query: 320 GFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYR 379
              E+ +HL +M +++G +P  +                + R R+ K++    L+ D+  
Sbjct: 252 ---ENREHLVMMEKILGPIPSHM----------------IHRTRKQKYFYKGGLVWDE-- 290
Query: 380 FSETDAREFAEFLVPL---------------------LDFTPEKRPTAQQCLQHPWLS 416
            + +D R   E   PL                     L+F P +R T  + L HP+ +
Sbjct: 291 -NSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALLHPFFA 347

>pdb|3KVW|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) In Complex With An Indirubin Ligand Length = 429

Iteration: 1
 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 77/141 (54%), Gaps = 5/141 (3%)
Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN 96
           RY   + +G G F  V  AYD +   +VALK+ ++  +F + A  EI +L  +   D  N
Sbjct: 98  RYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDN 157
Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGL 156
              VI ++++F        H+CM  E L  +L  LIK ++++G  L  VR+    IL  L
Sbjct: 158 TMNVIHMLENFTFR----NHICMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCL 213
Query: 157 DYLHRELGIIHTDLKPENILL 177
           D LH+   IIH DLKPENILL
Sbjct: 214 DALHKNR-IIHCDLKPENILL 233

>pdb|3KVW|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) In Complex With An Indirubin Ligand Length = 429

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 95/211 (45%), Gaps = 28/211 (13%)
Query: 243 KPERCLDGIDMRC--KVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KPE  L     R   KV+DFG++C  +++    IQ+R YRAPEVIL A Y   +DMWS  
Sbjct: 227 KPENILLKQQGRSGIKVIDFGSSCYEHQRVYTXIQSRFYRAPEVILGARYGMPIDMWSLG 286
Query: 301 CTAFELATGDMLFAPKSGQGFCEDE-DHLALMMELIGKMPRKIAIGGAQSKDYFDRHG-- 357
           C   EL TG  L          EDE D LA M+EL+G   +K+     ++K++    G  
Sbjct: 287 CILAELLTGYPLLP-------GEDEGDQLACMIELLGMPSQKLLDASKRAKNFVSXKGYP 339
Query: 358 ---------------DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEK 402
                          +  R RR K                 D   F +FL   L++ P  
Sbjct: 340 RYCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAV 399
Query: 403 RPTAQQCLQHPWLSLRNSTRDETKNKSNVEK 433
           R T  Q L+HPWL  R   +  T  K++V++
Sbjct: 400 RMTPGQALRHPWLR-RRLPKPPTGEKTSVKR 429

>pdb|3K2L|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) Length = 429

Iteration: 1
 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 77/141 (54%), Gaps = 5/141 (3%)
Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN 96
           RY   + +G G F  V  AYD +   +VALK+ ++  +F + A  EI +L  +   D  N
Sbjct: 98  RYEVLKVIGKGXFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDN 157
Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGL 156
              VI ++++F        H+CM  E L  +L  LIK ++++G  L  VR+    IL  L
Sbjct: 158 TMNVIHMLENFTFR----NHICMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCL 213
Query: 157 DYLHRELGIIHTDLKPENILL 177
           D LH+   IIH DLKPENILL
Sbjct: 214 DALHKNR-IIHCDLKPENILL 233

>pdb|3K2L|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) Length = 429

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 95/211 (45%), Gaps = 28/211 (13%)
Query: 243 KPERCLDGIDMRC--KVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KPE  L     R   KV+DFG++C  +++    IQ+R YRAPEVIL A Y   +DMWS  
Sbjct: 227 KPENILLKQQGRSGIKVIDFGSSCYEHQRVYXXIQSRFYRAPEVILGARYGMPIDMWSLG 286
Query: 301 CTAFELATGDMLFAPKSGQGFCEDE-DHLALMMELIGKMPRKIAIGGAQSKDYFDRHG-- 357
           C   EL TG  L          EDE D LA M+EL+G   +K+     ++K++    G  
Sbjct: 287 CILAELLTGYPLLP-------GEDEGDQLACMIELLGMPXQKLLDASKRAKNFVSXKGYP 339
Query: 358 ---------------DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEK 402
                          +  R RR K                 D   F +FL   L++ P  
Sbjct: 340 RYCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAV 399
Query: 403 RPTAQQCLQHPWLSLRNSTRDETKNKSNVEK 433
           R T  Q L+HPWL  R   +  T  K++V++
Sbjct: 400 RMTPGQALRHPWLR-RRLPKPPTGEKTSVKR 429

>pdb|4AZF|A Chain A, Human Dyrk2 In Complex With Leucettine L41 Length = 417

Iteration: 1
 Score = 91.3 bits (225), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 77/141 (54%), Gaps = 5/141 (3%)
Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN 96
           RY   + +G G F  V  AYD +   +VALK+ ++  +F + A  EI +L  +   D  N
Sbjct: 98  RYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDN 157
Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGL 156
              VI ++++F        H+CM  E L  +L  LIK ++++G  L  VR+    IL  L
Sbjct: 158 TMNVIHMLENFTFR----NHICMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCL 213
Query: 157 DYLHRELGIIHTDLKPENILL 177
           D LH+   IIH DLKPENILL
Sbjct: 214 DALHKNR-IIHCDLKPENILL 233

>pdb|4AZF|A Chain A, Human Dyrk2 In Complex With Leucettine L41 Length = 417

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 87/195 (44%), Gaps = 25/195 (12%)
Query: 243 KPERCLDGIDMRC--KVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KPE  L     R   KV+DFG++C  +++    IQ+R YRAPEVIL A Y   +DMWS  
Sbjct: 227 KPENILLKQQGRSGIKVIDFGSSCYEHQRVYTXIQSRFYRAPEVILGARYGMPIDMWSLG 286
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG--- 357
           C   EL TG  L  P   +G     D LA M+EL+G   +K+     ++K++    G   
Sbjct: 287 CILAELLTGYPLL-PGEDEG-----DQLACMIELLGMPSQKLLDASKRAKNFVSXKGYPR 340
Query: 358 --------------DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKR 403
                         +  R RR K                 D   F +FL   L++ P  R
Sbjct: 341 YCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVR 400
Query: 404 PTAQQCLQHPWLSLR 418
            T  Q L+HPWL  R
Sbjct: 401 MTPGQALRHPWLRRR 415

>pdb|2VX3|A Chain A, Crystal Structure Of The Human Dual Specificity Tyrosine- Phosphorylation-Regulated Kinase 1a Length = 382

Iteration: 1
 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 78/154 (50%), Gaps = 8/154 (5%)
Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN 96
           RY     +G G F  V  AYD     +VA+KI K+   F   A  E+ +L  +   D   
Sbjct: 55  RYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEM 114
Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGL 156
           +  ++ L  HF        HLC+V E L  +L  L++ + ++G+ LN  R+  + + T L
Sbjct: 115 KYYIVHLKRHFMFRN----HLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTAL 170
Query: 157 DYLHR-ELGIIHTDLKPENILLVSTIDPSKDPIR 189
            +L   EL IIH DLKPENILL    +P +  I+
Sbjct: 171 LFLATPELSIIHCDLKPENILLC---NPKRSAIK 201

>pdb|2VX3|A Chain A, Crystal Structure Of The Human Dual Specificity Tyrosine- Phosphorylation-Regulated Kinase 1a Length = 382

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 92/213 (43%), Gaps = 47/213 (22%)
Query: 243 KPERCLDGIDMRC--KVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KPE  L     R   K+VDFG++C+  ++  + IQ+R YR+PEV+L   Y  ++DMWS  
Sbjct: 186 KPENILLCNPKRSAIKIVDFGSSCQLGQRIYQXIQSRFYRSPEVLLGMPYDLAIDMWSLG 245
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
           C   E+ TG+ LF   SG     + D +  ++E++G  P  I     +++ +F++  D  
Sbjct: 246 CILVEMHTGEPLF---SG---ANEVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPD-- 297
Query: 361 RIRRLKFWSLDRLLVDKYRFSETDAR-----------------------------EFAEF 391
                  W+L +    K  +     R                             +F + 
Sbjct: 298 -----GTWNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDL 352
Query: 392 LVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE 424
           ++ +LD+ P+ R      LQH   S    T DE
Sbjct: 353 ILRMLDYDPKTRIQPYYALQH---SFFKKTADE 382

>pdb|3ANQ|A Chain A, Human Dyrk1aINHIBITOR COMPLEX Length = 368

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 78/154 (50%), Gaps = 8/154 (5%)
Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN 96
           RY     +G G F  V  AYD     +VA+KI K+   F   A  E+ +L  +   D   
Sbjct: 36  RYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEM 95
Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGL 156
           +  ++ L  HF        HLC+V E L  +L  L++ + ++G+ LN  R+  + + T L
Sbjct: 96  KYYIVHLKRHFMFR----NHLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTAL 151
Query: 157 DYLHR-ELGIIHTDLKPENILLVSTIDPSKDPIR 189
            +L   EL IIH DLKPENILL    +P +  I+
Sbjct: 152 LFLATPELSIIHCDLKPENILLC---NPKRSAIK 182

>pdb|3ANQ|A Chain A, Human Dyrk1aINHIBITOR COMPLEX Length = 368

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 47/218 (21%)
Query: 243 KPERCLDGIDMRC--KVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KPE  L     R   K+VDFG++C+  ++  + IQ+R YR+PEV+L   Y  ++DMWS  
Sbjct: 167 KPENILLCNPKRSAIKIVDFGSSCQLGQRIYQXIQSRFYRSPEVLLGMPYDLAIDMWSLG 226
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
           C   E+ TG+ LF   SG     + D +  ++E++G  P  I     +++ +F++  D  
Sbjct: 227 CILVEMHTGEPLF---SG---ANEVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPD-- 278
Query: 361 RIRRLKFWSLDRLLVDKYRFSETDAR-----------------------------EFAEF 391
                  W+L +    K  +     R                             +F + 
Sbjct: 279 -----GTWNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDL 333
Query: 392 LVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKS 429
           ++ +LD+ P+ R      LQH   S    T DE  N S
Sbjct: 334 ILRMLDYDPKTRIQPYYALQH---SFFKKTADEGTNTS 368

>pdb|4AZE|A Chain A, Human Dyrk1a In Complex With Leucettine L41 Length = 382

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 78/154 (50%), Gaps = 8/154 (5%)
Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN 96
           RY     +G G F  V  AYD     +VA+KI K+   F   A  E+ +L  +   D   
Sbjct: 55  RYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEM 114
Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGL 156
           +  ++ L  HF        HLC+V E L  +L  L++ + ++G+ LN  R+  + + T L
Sbjct: 115 KYYIVHLKRHFMFRN----HLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTAL 170
Query: 157 DYLHR-ELGIIHTDLKPENILLVSTIDPSKDPIR 189
            +L   EL IIH DLKPENILL    +P +  I+
Sbjct: 171 LFLATPELSIIHCDLKPENILLC---NPKRXAIK 201

>pdb|4AZE|A Chain A, Human Dyrk1a In Complex With Leucettine L41 Length = 382

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 92/213 (43%), Gaps = 47/213 (22%)
Query: 243 KPERCLDGIDMR--CKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KPE  L     R   K+VDFG++C+  ++  + IQ+R YR+PEV+L   Y  ++DMWS  
Sbjct: 186 KPENILLCNPKRXAIKIVDFGSSCQLGQRIYQXIQSRFYRSPEVLLGMPYDLAIDMWSLG 245
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
           C   E+ TG+ LF   SG     + D +  ++E++G  P  I     +++ +F++  D  
Sbjct: 246 CILVEMHTGEPLF---SG---ANEVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPD-- 297
Query: 361 RIRRLKFWSLDRLLVDKYRFSETDAR-----------------------------EFAEF 391
                  W+L +    K  +     R                             +F + 
Sbjct: 298 -----GTWNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDL 352
Query: 392 LVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE 424
           ++ +LD+ P+ R      LQH   S    T DE
Sbjct: 353 ILRMLDYDPKTRIQPYYALQH---SFFKKTADE 382

>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum, Cgd2_1960 Length = 388

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 160/411 (38%), Gaps = 102/411 (24%)
Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQF---AQAALHEIEVLSAVADGD 93
           +Y   +KLG G + IVW + D RT   VA+K    A Q    AQ    EI +L+ +    
Sbjct: 10  KYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTEL---- 65
Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYIL 153
            S  + ++ L++  +    N + + +V +++   L  +I   R   LE    + +   ++
Sbjct: 66  -SGHENIVNLLNVLR--ADNDRDVYLVFDYMETDLHAVI---RANILEPVHKQYVVYQLI 119
Query: 154 TGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSIN----GGSTS 209
             + YLH   G++H D+K           PS          IL   E  +     G S S
Sbjct: 120 KVIKYLHSG-GLLHRDMK-----------PSN---------ILLNAECHVKVADFGLSRS 158
Query: 210 TMTIVEXXXXXXXXXXXXNISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ 269
                              ++IRR +   I L   E   +  D +  + D+         
Sbjct: 159 F------------------VNIRRVT-NNIPLSINENTENFDDDQPILTDY--------- 190
Query: 270 FAEEIQTRQYRAPEVIL-RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQG-------- 320
               + TR YRAPE++L    Y+  +DMWS  C   E+  G  +F   S           
Sbjct: 191 ----VATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMNQLERIIGV 246
Query: 321 --FCEDED----HLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLL 374
             F  +ED           +I  +  K+ I  +  +D F +            W    L 
Sbjct: 247 IDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTK------------WKNLLLK 294
Query: 375 VDKYRFSETDAREFA-EFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE 424
           ++     + D  E A + L  LL F P KR +A   L+HP++S+ ++  +E
Sbjct: 295 IN----PKADCNEEALDLLDKLLQFNPNKRISANDALKHPFVSIFHNPNEE 341

>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma Length = 367

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 87/195 (44%), Gaps = 24/195 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A +A+ +    + TR YRAPEVIL    Y+ +VD+WS  C
Sbjct: 155 KPGNLAVNEDCELKILDFGLARQADSEMXGXVVTRWYRAPEVILNWMRYTQTVDIWSVGC 214
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
              E+ TG  LF         +  D L  +M++ G  P +  +   QS +  +    L  
Sbjct: 215 IMAEMITGKTLFKG------SDHLDQLKEIMKVTGTPPAEF-VQRLQSDEAKNYMKGLPE 267
Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFA-EFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS 420
           + +  F S+            T+A   A   L  +L    E+R TA + L HP+    + 
Sbjct: 268 LEKKDFASI-----------LTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLHD 316
Query: 421 TRDETKNKSNVEKVD 435
           T DE +    V+K D
Sbjct: 317 TEDEPQ----VQKYD 327

>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha Length = 389

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 83/190 (43%), Gaps = 24/190 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 181 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNMTVDIWSVGC 240
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA--IGGAQSKDYFDRHGDL 359
              EL TG  LF P +        + L  +M L G  P  +   +   ++++Y +    +
Sbjct: 241 IMAELLTGRTLF-PGTDHI-----NQLQQIMRLTGTPPASVISRMPSHEARNYINSLPQM 294
Query: 360 -KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            KR     F   + L VD               L  +L    +KR TA + L HP+ S  
Sbjct: 295 PKRNFADVFIGANPLAVD--------------LLEKMLVLDTDKRITASEALAHPYFSQY 340
Query: 419 NSTRDETKNK 428
           +   DE +++
Sbjct: 341 HDPDDEPESE 350

>pdb|2ZOQ|A Chain A, Structural Dissection Of Human Mitogen-Activated Kinase Erk1 Length = 382

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 36/195 (18%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 295
           KP   L       K+ DFG A  A+ +        E + TR YRAPE++L + GY+ S+D
Sbjct: 171 KPSNLLINTTCDLKICDFGLARIADPEHDHTGFLTEXVATRWYRAPEIMLNSKGYTKSID 230
Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 231 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 270
Query: 356 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 409
             DL  I  +K  +  + L  K +      F ++D++   + L  +L F P KR T ++ 
Sbjct: 271 --DLNCIINMKARNYLQSLPSKTKVAWAKLFPKSDSKAL-DLLDRMLTFNPNKRITVEEA 327
Query: 410 LQHPWLSLRNSTRDE 424
           L HP+L       DE
Sbjct: 328 LAHPYLEQYYDPTDE 342

>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The Phosphate-responsive Signal Transduction Pathway Length = 317

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMW 297
           KP+  L     + K+ DFG A RA       F+ E+ T  YRAP+V++ +  YS S+D+W
Sbjct: 135 KPQNLLINKRGQLKLGDFGLA-RAFGIPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIW 193
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ TG  LF          DE+ L L+ +++G  P +           ++ + 
Sbjct: 194 SCGCILAEMITGKPLFPG------TNDEEQLKLIFDIMGT-PNESLWPSVTKLPKYNPNI 246
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
             +  R L      R ++  +     D     +FL  LL   P+ R +A+Q L HPW +
Sbjct: 247 QQRPPRDL------RQVLQPHTKEPLDG-NLMDFLHGLLQLNPDMRLSAKQALHHPWFA 298

>pdb|3SA0|A Chain A, Complex Of Erk2 With Norathyriol Length = 360

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 295
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 151 KPSNLLLNTTXDLKIXDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 210
Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 211 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 250
Query: 356 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 409
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 251 --DLNXIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 307
Query: 410 LQHPWLSLRNSTRDE 424
           L HP+L       DE
Sbjct: 308 LAHPYLEQYYDPSDE 322

>pdb|3VUK|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M5 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 28/187 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDATLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
           C   E+  G +LF            DH+    ++I ++       G  S ++  +     
Sbjct: 213 CIMGEMIKGGVLFP---------GTDHIDQWNKVIEQL-------GTPSPEFMKKLQPTV 256
Query: 361 RI---RRLKF--WSLDRLLVDKYRFSETD-----AREFAEFLVPLLDFTPEKRPTAQQCL 410
           R     R K+  +S ++L  D    ++++     A +  + L  +L     KR +  + L
Sbjct: 257 RTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEAL 316
Query: 411 QHPWLSL 417
           QHP++++
Sbjct: 317 QHPYINV 323

>pdb|3V3V|A Chain A, Structural And Functional Analysis Of Quercetagetin, A Natural Jnk1 Inhibitor Length = 379

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 28/187 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F    E+ TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPEVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
           C   E+  G +LF            DH+    ++I ++       G    ++  +     
Sbjct: 213 CIMGEMIKGGVLFP---------GTDHIDQWNKVIEQL-------GTPCPEFMKKLQPTV 256
Query: 361 RI---RRLKF--WSLDRLLVDKYRFSETD-----AREFAEFLVPLLDFTPEKRPTAQQCL 410
           R     R K+  +S ++L  D    ++++     A +  + L  +L     KR +  + L
Sbjct: 257 RTYVENRPKYAGYSFEKLFPDVLFPADSEHNALKASQARDLLSKMLVIDASKRISVDEAL 316
Query: 411 QHPWLSL 417
           QHP++++
Sbjct: 317 QHPYINV 323

>pdb|3VUI|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 28/187 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDATLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
           C   E+  G +LF            DH+    ++I ++       G  S ++  +     
Sbjct: 213 CIMGEMIKGGVLFP---------GTDHIDQWNKVIEQL-------GTPSPEFMKKLQPTV 256
Query: 361 RI---RRLKF--WSLDRLLVDKYRFSETD-----AREFAEFLVPLLDFTPEKRPTAQQCL 410
           R     R K+  +S ++L  D    ++++     A +  + L  +L     KR +  + L
Sbjct: 257 RTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEAL 316
Query: 411 QHPWLSL 417
           QHP++++
Sbjct: 317 QHPYINV 323

>pdb|4FV7|A Chain A, Crystal Structure Of The Erk2 Complexed With E94 Length = 360

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 295
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 151 KPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 210
Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 211 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 250
Query: 356 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 409
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 251 --DLNXIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 307
Query: 410 LQHPWLSLRNSTRDE 424
           L HP+L       DE
Sbjct: 308 LAHPYLEQYYDPSDE 322

>pdb|3FI3|A Chain A, Crystal Structure Of Jnk3 With Indazole Inhibitor, Sr-3737 Length = 364

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDXTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 359
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 213 CIMGEMVRHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 266
Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 417
             +   K +  D L       ++  A +  + L  +L   P KR +    LQHP++++
Sbjct: 267 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 323

>pdb|3VUH|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M3 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 28/187 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDATLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
           C   E+  G +LF            DH+    ++I ++       G  S ++  +     
Sbjct: 213 CIMGEMIKGGVLFP---------GTDHIDQWNKVIEQL-------GTPSPEFMKKLQPTV 256
Query: 361 RI---RRLKF--WSLDRLLVDKYRFSETD-----AREFAEFLVPLLDFTPEKRPTAQQCL 410
           R     R K+  +S ++L  D    ++++     A +  + L  +L     KR +  + L
Sbjct: 257 RTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEAL 316
Query: 411 QHPWLSL 417
           QHP++++
Sbjct: 317 QHPYINV 323

>pdb|3KVX|A Chain A, Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Length = 364

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDXTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 359
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 213 CIMGEMVRHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 266
Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 417
             +   K +  D L       ++  A +  + L  +L   P KR +    LQHP++++
Sbjct: 267 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 323

>pdb|3FV8|A Chain A, Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Length = 355

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDXTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 359
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 213 CIMGEMVRHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 266
Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 417
             +   K +  D L       ++  A +  + L  +L   P KR +    LQHP++++
Sbjct: 267 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 323

>pdb|2R9S|A Chain A, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline Inhibitor Length = 356

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 146 KPSNIVVKSDXTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 205
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 359
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 206 CIMGEMVRHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 259
Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 417
             +   K +  D L       ++  A +  + L  +L   P KR +    LQHP++++
Sbjct: 260 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 316

>pdb|3E7O|A Chain A, Crystal Structure Of Jnk2 Length = 360

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 26/186 (13%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A+  F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 151 KPSNIVVKSDCTLKILDFGLARTASTNFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 210
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKM--PRKIAIGGAQS--KDYFDRH 356
           C   EL  G ++F     QG     DH+    ++I ++  P    +   Q   ++Y +  
Sbjct: 211 CIMGELVKGSVIF-----QG----TDHIDQWNKVIEQLGTPSAEFMAALQPTVRNYVENR 261
Query: 357 GDLKRIRRLKFWSLDRLLVDKYRFSETD-----AREFAEFLVPLLDFTPEKRPTAQQCLQ 411
                I      + + L  D    SE++       +  + L  +L   P+KR +  + L+
Sbjct: 262 PAYPGI------AFEELFPDWIFPSESERDKIKTSQARDLLSKMLVIDPDKRISVDEALR 315
Query: 412 HPWLSL 417
           HP++++
Sbjct: 316 HPYITV 321

>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase Length = 360

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L A  Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNAMHYNQTVDIWSVGC 211
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 419 NSTRDE 424
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|3FI2|A Chain A, Crystal Structure Of Jnk3 With Amino-Pyrazole Inhibitor, Sr- 3451 Length = 353

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDXTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 359
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 213 CIMGEMVRHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 266
Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 417
             +   K +  D L       ++  A +  + L  +L   P KR +    LQHP++++
Sbjct: 267 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 323

>pdb|3VUG|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 28/187 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
           C   E+  G +LF            DH+    ++I ++       G  S ++  +     
Sbjct: 213 CIMGEMIKGGVLFP---------GTDHIDQWNKVIEQL-------GTPSPEFMKKLQPTV 256
Query: 361 RI---RRLKF--WSLDRLLVDKYRFSETD-----AREFAEFLVPLLDFTPEKRPTAQQCL 410
           R     R K+  +S ++L  D    ++++     A +  + L  +L     KR +  + L
Sbjct: 257 RTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEAL 316
Query: 411 QHPWLSL 417
           QHP++++
Sbjct: 317 QHPYINV 323

>pdb|3VUD|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 28/187 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
           C   E+  G +LF            DH+    ++I ++       G  S ++  +     
Sbjct: 213 CIMGEMIKGGVLFP---------GTDHIDQWNKVIEQL-------GTPSPEFMKKLQPTV 256
Query: 361 RI---RRLKF--WSLDRLLVDKYRFSETD-----AREFAEFLVPLLDFTPEKRPTAQQCL 410
           R     R K+  +S ++L  D    ++++     A +  + L  +L     KR +  + L
Sbjct: 257 RTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEAL 316
Query: 411 QHPWLSL 417
           QHP++++
Sbjct: 317 QHPYINV 323

>pdb|3NPC|A Chain A, Crystal Structure Of Jnk2 Complexed With Birb796 Length = 364

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 16/181 (8%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY+ +VD+WS  
Sbjct: 153 KPSNIVVKSDCTLKILDFGLARTACTNFMMTPYVVTRYYRAPEVILGMGYAANVDIWSVG 212
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKM--PRKIAIGGAQS--KDYFDRH 356
           C   EL  G ++F     QG     DH+    ++I ++  P    +   Q   ++Y +  
Sbjct: 213 CIMGELVKGCVIF-----QG----TDHIDQWNKVIEQLGTPSAEFMAALQPTVRNYVENR 263
Query: 357 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
                I+  + +  D +   +    +    +  + L  +L   P+KR +  + L+HP+++
Sbjct: 264 PKYPGIKFEELFP-DWIFPSESERDKIKTSQARDLLSKMLVIDPDKRISVDEALRHPYIT 322
Query: 417 L 417
           +
Sbjct: 323 V 323

>pdb|1PME|A Chain A, Structure Of Penta Mutant Human Erk2 Map Kinase Complexed With A Specific Inhibitor Of Human P38 Map Kinase Length = 380

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 295
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 171 KPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 230
Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 231 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 270
Query: 356 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 409
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 271 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 327
Query: 410 LQHPWLSLRNSTRDE 424
           L HP+L       DE
Sbjct: 328 LAHPYLEQYYDPSDE 342

>pdb|1JNK|A Chain A, The C-Jun N-Terminal Kinase (Jnk3s) Complexed With Mgamp-Pnp Length = 423

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 191 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 250
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 359
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 251 CIMGEMVRHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 304
Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 417
             +   K +  D L       ++  A +  + L  +L   P KR +    LQHP++++
Sbjct: 305 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 361

>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38) Length = 360

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + + A  + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDFGLARHTDDEMAGFVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLAQM 265
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 419 NSTRDE 424
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With Inhibitor Pg-874743 Length = 348

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + + A  + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 148 KPSNLAVNEDCELKILDFGLARHTDDEMAGFVATRWYRAPEIMLNWMHYNQTVDIWSVGC 207
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 208 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLAQM 261
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 262 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 307
Query: 419 NSTRDE 424
           +   DE
Sbjct: 308 HDPDDE 313

>pdb|3TTJ|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-359, A Jnk Inhibitor For The Prevention Of Ischemia-Reperfusion Injury Length = 464

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 191 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 250
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 359
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 251 CIMGEMVRHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 304
Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 417
             +   K +  D L       ++  A +  + L  +L   P KR +    LQHP++++
Sbjct: 305 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 361

>pdb|1PMN|A Chain A, Crystal Structure Of Jnk3 In Complex With An Imidazole- Pyrimidine Inhibitor Length = 364

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 154 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 213
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 359
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 214 CIMGEMVRHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 267
Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 417
             +   K +  D L       ++  A +  + L  +L   P KR +    LQHP++++
Sbjct: 268 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 324

>pdb|3TEI|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 84/195 (43%), Gaps = 36/195 (18%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 295
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 153 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 212
Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 213 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 252
Query: 356 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 409
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 253 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 309
Query: 410 LQHPWLSLRNSTRDE 424
           L HP+L+      DE
Sbjct: 310 LAHPYLAQYYDPSDE 324

>pdb|2OK1|A Chain A, Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3- Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide Length = 365

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 154 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 213
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 359
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 214 CIMGEMVRHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 267
Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 417
             +   K +  D L       ++  A +  + L  +L   P KR +    LQHP++++
Sbjct: 268 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 324

>pdb|4GSB|A Chain A, Monoclinic Crystal Form Of The Apo-Erk2 Length = 364

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 295
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 155 KPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 214
Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 215 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 254
Query: 356 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 409
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 255 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 311
Query: 410 LQHPWLSLRNSTRDE 424
           L HP+L       DE
Sbjct: 312 LAHPYLEQYYDPSDE 326

>pdb|2O0U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With N-{3-Cyano-6-[3-(1- Piperidinyl)propanoyl]-4,5,6,7-Tetrahydrothieno[2, 3-C]pyridin-2-Yl}- 1-Naphthalenecarboxamide Length = 364

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 359
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 213 CIMGEMVRHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 266
Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 417
             +   K +  D L       ++  A +  + L  +L   P KR +    LQHP++++
Sbjct: 267 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 323

>pdb|3OXI|A Chain A, Design And Synthesis Of Disubstituted Thiophene And Thiazole Based Inhibitors Of Jnk For The Treatment Of Neurodegenerative Diseases Length = 362

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 152 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 211
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 359
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 212 CIMGEMVRHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 265
Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 417
             +   K +  D L       ++  A +  + L  +L   P KR +    LQHP++++
Sbjct: 266 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 322

>pdb|4EXU|A Chain A, Mapk13, Inactive Form Length = 371

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 80/185 (43%), Gaps = 18/185 (9%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A  A+ +    + TR YRAPEVIL    Y+ +VD+WS  C
Sbjct: 171 KPGNLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGC 230
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
              E+ TG  LF    G+ +    D L  ++++ G +P    +     K        L +
Sbjct: 231 IMAEMLTGKTLF---KGKDYL---DQLTQILKVTG-VPGTEFVQKLNDKAAKSYIQSLPQ 283
Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 421
             R  F  L         F     +  A+ L  +L+   +KR TA Q L HP+       
Sbjct: 284 TPRKDFTQL---------FPRASPQA-ADLLEKMLELDVDKRLTAAQALTHPFFEPFRDP 333
Query: 422 RDETK 426
            +ET+
Sbjct: 334 EEETE 338

>pdb|3PTG|A Chain A, Design And Synthesis Of A Novel, Orally Efficacious Tri-Substituted Thiophene Based Jnk Inhibitor Length = 363

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 359
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 213 CIMGEMVRHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 266
Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 417
             +   K +  D L       ++  A +  + L  +L   P KR +    LQHP++++
Sbjct: 267 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 323

>pdb|4H36|A Chain A, Crystal Structure Of Jnk3 In Complex With Atf2 Peptide Length = 356

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 147 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 206
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 359
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 207 CIMGEMVRHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 260
Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 417
             +   K +  D L       ++  A +  + L  +L   P KR +    LQHP++++
Sbjct: 261 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 317

>pdb|2EXC|X Chain X, Inhibitor Complex Of Jnk3 Length = 356

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 147 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 206
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 359
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 207 CIMGEMVRHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 260
Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 417
             +   K +  D L       ++  A +  + L  +L   P KR +    LQHP++++
Sbjct: 261 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 317

>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase Length = 353

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 80/185 (43%), Gaps = 18/185 (9%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A  A+ +    + TR YRAPEVIL    Y+ +VD+WS  C
Sbjct: 153 KPGNLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGC 212
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
              E+ TG  LF    G+ +    D L  ++++ G +P    +     K        L +
Sbjct: 213 IMAEMLTGKTLF---KGKDYL---DQLTQILKVTG-VPGTEFVQKLNDKAAKSYIQSLPQ 265
Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 421
             R  F  L         F     +  A+ L  +L+   +KR TA Q L HP+       
Sbjct: 266 TPRKDFTQL---------FPRASPQA-ADLLEKMLELDVDKRLTAAQALTHPFFEPFRDP 315
Query: 422 RDETK 426
            +ET+
Sbjct: 316 EEETE 320

>pdb|2B1P|A Chain A, Inhibitor Complex Of Jnk3 Length = 355

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 146 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 205
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 359
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 206 CIMGEMVRHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 259
Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 417
             +   K +  D L       ++  A +  + L  +L   P KR +    LQHP++++
Sbjct: 260 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 316

>pdb|4FUX|A Chain A, Crystal Structure Of The Erk2 Complexed With E75 Length = 360

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 295
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 151 KPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 210
Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 211 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 250
Query: 356 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 409
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 251 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 307
Query: 410 LQHPWLSLRNSTRDE 424
           L HP+L       DE
Sbjct: 308 LAHPYLEQYYDPSDE 322

>pdb|3QYW|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor Length = 364

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 295
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 155 KPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 214
Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 215 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 254
Query: 356 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 409
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 255 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 311
Query: 410 LQHPWLSLRNSTRDE 424
           L HP+L       DE
Sbjct: 312 LAHPYLEQYYDPSDE 326

>pdb|2OJG|A Chain A, Crystal Structure Of Erk2 In Complex With N,n-dimethyl-4-(4- Phenyl-1h-pyrazol-3-yl)-1h-pyrrole-2-carboxamide Length = 380

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 295
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 171 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 230
Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 231 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 270
Query: 356 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 409
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 271 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 327
Query: 410 LQHPWLSLRNSTRDE 424
           L HP+L       DE
Sbjct: 328 LAHPYLEQYYDPSDE 342

>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A Dihydroquinazolinone Inhibitor Length = 370

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 32/208 (15%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   +++DFG A +A+++    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 158 KPSNVAVNEDSELRILDFGLARQADEEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 217
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIA-IGGAQSKDYFDR---- 355
              EL  G  LF    G  +    D L  +ME++G   P  +A I    ++ Y       
Sbjct: 218 IMAELLQGKALFP---GSDYI---DQLKRIMEVVGTPSPEVLAKISSEHARTYIQSLPPM 271
Query: 356 -HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
              DL  I    F   + L +D               L  +L    ++R +A + L H +
Sbjct: 272 PQKDLSSI----FRGANPLAID--------------LLGRMLVLDSDQRVSAAEALAHAY 313
Query: 415 LSLRNSTRDETKNKSNVEKVDVGMSKLE 442
            S  +   DE + +   E V+     LE
Sbjct: 314 FSQYHDPEDEPEAEPYDESVEAKERTLE 341

>pdb|3PY3|A Chain A, Crystal Structure Of Phosphorylated P38alpha Map Kinase Length = 380

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 172 KPSNLAVNEDCELKILDFGLARHTDDEMXGXVATRWYRAPEIMLNWMHYNQTVDIWSVGC 231
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 232 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLAQM 285
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 286 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 331
Query: 419 NSTRDE 424
           +   DE
Sbjct: 332 HDPDDE 337

>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A Dihydroquinazolinone Length = 370

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 32/208 (15%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   +++DFG A +A+++    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 158 KPSNVAVNEDSELRILDFGLARQADEEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 217
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIA-IGGAQSKDYFDR---- 355
              EL  G  LF    G  +    D L  +ME++G   P  +A I    ++ Y       
Sbjct: 218 IMAELLQGKALFP---GSDYI---DQLKRIMEVVGTPSPEVLAKISSEHARTYIQSLPPM 271
Query: 356 -HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
              DL  I    F   + L +D               L  +L    ++R +A + L H +
Sbjct: 272 PQKDLSSI----FRGANPLAID--------------LLGRMLVLDSDQRVSAAEALAHAY 313
Query: 415 LSLRNSTRDETKNKSNVEKVDVGMSKLE 442
            S  +   DE + +   E V+     LE
Sbjct: 314 FSQYHDPEDEPEAEPYDESVEAKERTLE 341

>pdb|4H3Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 81/189 (42%), Gaps = 24/189 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 295
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 153 KPSNLLLNTTSDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 212
Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++  + 
Sbjct: 213 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQEDLNC 256
Query: 356 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
             +LK    L        +     F   D++   + L  +L F P KR   +Q L HP+L
Sbjct: 257 GINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQALAHPYL 315
Query: 416 SLRNSTRDE 424
           +      DE
Sbjct: 316 AQYYDPSDE 324

>pdb|3ZUV|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 364

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 295
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 155 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLXEXVATRWYRAPEIMLNSKGYTKSID 214
Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 215 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 254
Query: 356 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 409
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 255 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 311
Query: 410 LQHPWLSLRNSTRDE 424
           L HP+L       DE
Sbjct: 312 LAHPYLEQYYDPSDE 326

>pdb|2ERK|A Chain A, Phosphorylated Map Kinase Erk2 Length = 365

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 295
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 156 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLXEXVATRWYRAPEIMLNSKGYTKSID 215
Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 216 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 255
Query: 356 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 409
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 256 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 312
Query: 410 LQHPWLSLRNSTRDE 424
           L HP+L       DE
Sbjct: 313 LAHPYLEQYYDPSDE 327

>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain In Complex With A Monocyclic Pyrazolone Inhibitor Length = 360

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + + A  + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDFGLARHTDDEMAGFVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 419 NSTRDE 424
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk Docking Partner Length = 380

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 172 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 231
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 232 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLAQM 285
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 286 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 331
Query: 419 NSTRDE 424
           +   DE
Sbjct: 332 HDPDDE 337

>pdb|2Y9Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 295
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 153 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 212
Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 213 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 252
Query: 356 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 409
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 253 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 309
Query: 410 LQHPWLSLRNSTRDE 424
           L HP+L       DE
Sbjct: 310 LAHPYLEQYYDPSDE 324

>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655 Length = 379

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 171 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 230
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 231 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLAQM 284
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 285 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 330
Query: 419 NSTRDE 424
           +   DE
Sbjct: 331 HDPDDE 336

>pdb|1WZY|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Pyrazolopyridazine Derivative Length = 368

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 295
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 159 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 218
Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 219 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 258
Query: 356 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 409
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 259 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 315
Query: 410 LQHPWLSLRNSTRDE 424
           L HP+L       DE
Sbjct: 316 LAHPYLEQYYDPSDE 330

>pdb|1TVO|A Chain A, The Structure Of Erk2 In Complex With A Small Molecule Inhibitor Length = 368

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 295
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 151 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 210
Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 211 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 250
Query: 356 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 409
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 251 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 307
Query: 410 LQHPWLSLRNSTRDE 424
           L HP+L       DE
Sbjct: 308 LAHPYLEQYYDPSDE 322

>pdb|3ZU7|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 365

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 295
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 156 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 215
Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 216 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 255
Query: 356 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 409
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 256 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 312
Query: 410 LQHPWLSLRNSTRDE 424
           L HP+L       DE
Sbjct: 313 LAHPYLEQYYDPSDE 327

>pdb|2Z7L|A Chain A, Unphosphorylated Mitogen Activated Protein Kinase Erk2 In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin 2-Yl]amino}phenyl)acetic Acid Length = 366

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 295
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 157 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 216
Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 217 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 256
Query: 356 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 409
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 257 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 313
Query: 410 LQHPWLSLRNSTRDE 424
           L HP+L       DE
Sbjct: 314 LAHPYLEQYYDPSDE 328

>pdb|3C9W|A Chain A, Crystal Structure Of Erk-2 With Hypothemycin Covalently Bound Length = 357

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 295
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 148 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 207
Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 208 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 247
Query: 356 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 409
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 248 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 304
Query: 410 LQHPWLSLRNSTRDE 424
           L HP+L       DE
Sbjct: 305 LAHPYLEQYYDPSDE 319

>pdb|2FYS|B Chain B, Crystal Structure Of Erk2 Complex With Kim Peptide Derived From Mkp3 Length = 364

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 295
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 155 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 214
Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 215 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 254
Query: 356 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 409
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 255 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 311
Query: 410 LQHPWLSLRNSTRDE 424
           L HP+L       DE
Sbjct: 312 LAHPYLEQYYDPSDE 326

>pdb|3O71|A Chain A, Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length = 358

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 295
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 149 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 208
Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 209 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 248
Query: 356 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 409
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 249 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 305
Query: 410 LQHPWLSLRNSTRDE 424
           L HP+L       DE
Sbjct: 306 LAHPYLEQYYDPSDE 320

>pdb|3EB0|A Chain A, Crystal Structure Of Cgd4_240 From Cryptosporidium Parvum In Complex With Indirubin E804 Length = 383

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 86/196 (43%), Gaps = 30/196 (15%)
Query: 243 KPERCL-DGIDMRCKVVDFGNACR--ANKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 298
           KP+  L +  D   K+ DFG+A +   ++     I +R YRAPE++L A  Y+ S+D+WS
Sbjct: 168 KPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAXICSRFYRAPELMLGATEYTPSIDLWS 227
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR--- 355
             C   EL  G  LF+ ++                 I ++ R I I G  +K+   R   
Sbjct: 228 IGCVFGELILGKPLFSGETS----------------IDQLVRIIQIMGTPTKEQMIRMNP 271
Query: 356 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
           H    R   LK     ++L       E       + L  +L + P+ R    + + HP+ 
Sbjct: 272 HYTEVRFPTLKAKDWRKIL------PEGTPSLAIDLLEQILRYEPDLRINPYEAMAHPFF 325
Query: 416 S-LRNSTRDETKNKSN 430
             LRNS   E KN SN
Sbjct: 326 DHLRNSYESEVKNNSN 341

>pdb|4FV6|A Chain A, Crystal Structure Of The Erk2 Complexed With E57 Length = 360

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 295
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 151 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 210
Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 211 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 250
Query: 356 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 409
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 251 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 307
Query: 410 LQHPWLSLRNSTRDE 424
           L HP+L       DE
Sbjct: 308 LAHPYLEQYYDPSDE 322

>pdb|1GOL|A Chain A, Coordinates Of Rat Map Kinase Erk2 With An Arginine Mutation At Position 52 Length = 364

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 295
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 155 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 214
Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 215 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 254
Query: 356 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 409
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 255 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 311
Query: 410 LQHPWLSLRNSTRDE 424
           L HP+L       DE
Sbjct: 312 LAHPYLEQYYDPSDE 326

>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl Amide Inhibitor Length = 371

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 163 KPSNLAVNEDXELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 222
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 223 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 276
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 277 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 322
Query: 419 NSTRDE 424
           +   DE
Sbjct: 323 HDPDDE 328

>pdb|2OZA|B Chain B, Structure Of P38alpha Complex Length = 366

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 158 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 217
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 218 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLAQM 271
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 272 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 317
Query: 419 NSTRDE 424
           +   DE
Sbjct: 318 HDPDDE 323

>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 30/189 (15%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDXELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      L
Sbjct: 212 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQ---SL 262
Query: 360 KRIRRLKFWSL----DRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
            ++ ++ F ++    + L VD               L  +L    +KR TA Q L H + 
Sbjct: 263 TQMPKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYF 308
Query: 416 SLRNSTRDE 424
           +  +   DE
Sbjct: 309 AQYHDPDDE 317

>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The Docking Site On Its Nuclear Substrate Mef2a Length = 360

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLAQM 265
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 419 NSTRDE 424
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P- Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl- Pyridin-3-Yl)naphthalen-1-Yl]urea Length = 348

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 80/186 (43%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 148 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 207
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +     +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 208 IMAELLTGRTLF-PGT-----DHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLAQM 261
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 262 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 307
Query: 419 NSTRDE 424
           +   DE
Sbjct: 308 HDPDDE 313

>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In Phosphorylated P38a And In Solution Length = 370

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 162 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 221
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 222 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLAQM 275
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 276 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 321
Query: 419 NSTRDE 424
           +   DE
Sbjct: 322 HDPDDE 327

>pdb|2GPH|A Chain A, Docking Motif Interactions In The Map Kinase Erk2 Length = 364

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 295
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 155 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 214
Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 215 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 254
Query: 356 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 409
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 255 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 311
Query: 410 LQHPWLSLRNSTRDE 424
           L HP+L       DE
Sbjct: 312 LAHPYLEQYYDPSDE 326

>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With Inhibitor Pg-892579 Length = 348

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 148 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 207
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 208 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLAQM 261
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 262 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 307
Query: 419 NSTRDE 424
           +   DE
Sbjct: 308 HDPDDE 313

>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine Length = 365

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 157 KPSNLAVNEDXELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 216
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 217 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 270
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 271 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 316
Query: 419 NSTRDE 424
           +   DE
Sbjct: 317 HDPDDE 322

>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195 Length = 365

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 157 KPSNLAVNEDXELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 216
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 217 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 270
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 271 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 316
Query: 419 NSTRDE 424
           +   DE
Sbjct: 317 HDPDDE 322

>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A Dihydroquinolinone Length = 366

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 30/189 (15%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 158 KPSNLAVNEDSELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 217
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      L
Sbjct: 218 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQ---SL 268
Query: 360 KRIRRLKFWSL----DRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
            ++ ++ F ++    + L VD               L  +L    +KR TA Q L H + 
Sbjct: 269 TQMPKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYF 314
Query: 416 SLRNSTRDE 424
           +  +   DE
Sbjct: 315 AQYHDPDDE 323

>pdb|3RP9|A Chain A, Crystal Structure Of The Apo Mapk From Toxoplasma Gondii, 25.M01780 Or Tgme49_007820 Length = 458

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 102/411 (24%), Positives = 154/411 (37%), Gaps = 96/411 (23%)
Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQF-----AQAALHEIEVLSAVAD 91
           RY  +  +G G +  V  AYD      VA+K  K    F      +  L EI +L+ +  
Sbjct: 54  RYEIRHLIGTGSYGHVCEAYDKLEKRVVAIK--KILRVFEDLIDCKRILREIAILNRL-- 109
Query: 92  GDPSNEKCVIRLID-HFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICK 150
               N   V++++D            L +VLE       +L +   Y  L    ++ +  
Sbjct: 110 ----NHDHVVKVLDIVIPKDVEKFDELYVVLEIADSDFKKLFRTPVY--LTELHIKTLLY 163
Query: 151 YILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTST 210
            +L G+ Y+H   GI+H DLKP N L+    D S      GL   ++ PE   NG S   
Sbjct: 164 NLLVGVKYVH-SAGILHRDLKPANCLV--NQDCSVKVCDFGLARTVDYPE---NGNS--- 214
Query: 211 MTIVEXXXXXXXXXXXXNISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF 270
                             IS R   M                    +V F +     +Q 
Sbjct: 215 ---------------QLPISPREDDMN-------------------LVTFPHTKNLKRQL 240
Query: 271 AEEIQTRQYRAPEVI-LRAGYSFSVDMWSFACTAFELAT-----------------GDML 312
              + TR YRAPE+I L+  Y+ ++D+WS  C   EL                   G   
Sbjct: 241 TGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIKENVAYHADRGPLFPGSSC 300
Query: 313 F--AP--KSGQGFC----EDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRR 364
           F  +P  K+G  F      + D L ++  ++G  P +  I   + +       D KR  R
Sbjct: 301 FPLSPDQKAGNDFKFHTRGNRDQLNVIFNILG-TPSEEDIEALEKE-------DAKRYIR 352
Query: 365 LKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
           +        L +++  S  DA      L  +L F P KR T  +CL HP+ 
Sbjct: 353 IFPKREGTDLAERFPASSADA---IHLLKRMLVFNPNKRITINECLAHPFF 400

>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 11 (p38 Beta) In Complex With Nilotinib Length = 348

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 32/208 (15%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   +++DFG A +A+++    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 150 KPSNVAVNEDCELRILDFGLARQADEEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 209
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIA-IGGAQSKDYFDR---- 355
              EL  G  LF    G  +    D L  +ME++G   P  +A I    ++ Y       
Sbjct: 210 IMAELLQGKALF---PGSDYI---DQLKRIMEVVGTPSPEVLAKISSEHARTYIQSLPPM 263
Query: 356 -HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
              DL  I    F   + L +D               L  +L    ++R +A + L H +
Sbjct: 264 PQKDLSSI----FRGANPLAID--------------LLGRMLVLDSDQRVSAAEALAHAY 305
Query: 415 LSLRNSTRDETKNKSNVEKVDVGMSKLE 442
            S  +   DE + +   E V+     LE
Sbjct: 306 FSQYHDPEDEPEAEPYDESVEAKERTLE 333

>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 154 KPSNLAVNEDSELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 213
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 214 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 267
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 268 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 313
Query: 419 NSTRDE 424
           +   DE
Sbjct: 314 HDPDDE 319

>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex Length = 366

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 30/189 (15%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 158 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 217
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      L
Sbjct: 218 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQ---SL 268
Query: 360 KRIRRLKFWSL----DRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
            ++ ++ F ++    + L VD               L  +L    +KR TA Q L H + 
Sbjct: 269 TQMPKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYF 314
Query: 416 SLRNSTRDE 424
           +  +   DE
Sbjct: 315 AQYHDPDDE 323

>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex With Dp802 Length = 354

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDFGLARHTDDEMTGXVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 419 NSTRDE 424
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1- Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3- Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide Length = 380

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 172 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 231
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 232 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 285
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 286 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 331
Query: 419 NSTRDE 424
           +   DE
Sbjct: 332 HDPDDE 337

>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Pyrrole-2- Carboxamide Inhibitor Length = 371

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 163 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 222
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 223 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 276
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 277 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 322
Query: 419 NSTRDE 424
           +   DE
Sbjct: 323 HDPDDE 328

>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995 Length = 379

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 171 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 230
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 231 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 284
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 285 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 330
Query: 419 NSTRDE 424
           +   DE
Sbjct: 331 HDPDDE 336

>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor Length = 383

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 175 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 234
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 235 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 288
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 289 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 334
Query: 419 NSTRDE 424
           +   DE
Sbjct: 335 HDPDDE 340

>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499 Length = 372

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 164 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 223
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 224 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 277
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 278 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 323
Query: 419 NSTRDE 424
           +   DE
Sbjct: 324 HDPDDE 329

>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955 Length = 350

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 150 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 209
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 210 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 263
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 264 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 309
Query: 419 NSTRDE 424
           +   DE
Sbjct: 310 HDPDDE 315

>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A Dihydroquinazolinone Inhibitor Length = 366

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 158 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 217
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 218 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 271
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 272 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 317
Query: 419 NSTRDE 424
           +   DE
Sbjct: 318 HDPDDE 323

>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715 Length = 362

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 154 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 213
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 214 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 267
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 268 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 313
Query: 419 NSTRDE 424
           +   DE
Sbjct: 314 HDPDDE 319

>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole Inhibitor Length = 372

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 164 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 223
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 224 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 277
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 278 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 323
Query: 419 NSTRDE 424
           +   DE
Sbjct: 324 HDPDDE 329

>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195 Length = 372

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 164 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 223
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 224 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 277
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 278 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 323
Query: 419 NSTRDE 424
           +   DE
Sbjct: 324 HDPDDE 329

>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48 Length = 360

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 419 NSTRDE 424
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 349

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 149 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 208
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 209 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 262
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 263 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 308
Query: 419 NSTRDE 424
           +   DE
Sbjct: 309 HDPDDE 314

>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121 Length = 362

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 154 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 213
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 214 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 267
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 268 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 313
Query: 419 NSTRDE 424
           +   DE
Sbjct: 314 HDPDDE 319

>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 419 NSTRDE 424
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase Length = 362

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 154 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 213
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 214 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 267
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 268 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 313
Query: 419 NSTRDE 424
           +   DE
Sbjct: 314 HDPDDE 319

>pdb|3HEC|A Chain A, P38 In Complex With Imatinib Length = 348

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 148 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 207
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 208 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 261
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 262 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 307
Query: 419 NSTRDE 424
           +   DE
Sbjct: 308 HDPDDE 313

>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based Inhibitor Length = 383

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 175 KPSNLAVNEDCELKILDFGLARHTDDEMXGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 234
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 235 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 288
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 289 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 334
Query: 419 NSTRDE 424
           +   DE
Sbjct: 335 HDPDDE 340

>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase Length = 367

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 159 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 218
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 219 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 272
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 273 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 318
Query: 419 NSTRDE 424
           +   DE
Sbjct: 319 HDPDDE 324

>pdb|2XRW|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 371

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 28/187 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 154 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 213
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
           C   E+  G +LF            DH+    ++I ++       G    ++  +     
Sbjct: 214 CIMGEMIKGGVLFP---------GTDHIDQWNKVIEQL-------GTPCPEFMKKLQPTV 257
Query: 361 RI---RRLKF--WSLDRLLVDKYRFSETD-----AREFAEFLVPLLDFTPEKRPTAQQCL 410
           R     R K+  +S ++L  D    ++++     A +  + L  +L     KR +  + L
Sbjct: 258 RTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEAL 317
Query: 411 QHPWLSL 417
           QHP++++
Sbjct: 318 QHPYINV 324

>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant Length = 360

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 419 NSTRDE 424
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE COMPLEX IN Solution Length = 359

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 157 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 216
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 217 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 270
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 271 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 316
Query: 419 NSTRDE 424
           +   DE
Sbjct: 317 HDPDDE 322

>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea Length = 365

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 157 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 216
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 217 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 270
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 271 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 316
Query: 419 NSTRDE 424
           +   DE
Sbjct: 317 HDPDDE 322

>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 359

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 151 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 210
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 211 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 264
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 265 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 310
Query: 419 NSTRDE 424
           +   DE
Sbjct: 311 HDPDDE 316

>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine Length = 351

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 149 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 208
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 209 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 262
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 263 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 308
Query: 419 NSTRDE 424
           +   DE
Sbjct: 309 HDPDDE 314

>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant Length = 360

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 419 NSTRDE 424
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376 Length = 354

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 419 NSTRDE 424
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In Complex With 4-[3-Methylsulfanylanilino]-6,7- Dimethoxyquinazoline Length = 360

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 419 NSTRDE 424
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant Length = 360

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 419 NSTRDE 424
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|1UKH|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By The Scaffolding Protein Jip1 And Sp600125 Length = 369

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 28/187 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
           C   E+  G +LF            DH+    ++I ++       G    ++  +     
Sbjct: 213 CIMGEMIKGGVLFP---------GTDHIDQWNKVIEQL-------GTPCPEFMKKLQPTV 256
Query: 361 RI---RRLKF--WSLDRLLVDKYRFSETD-----AREFAEFLVPLLDFTPEKRPTAQQCL 410
           R     R K+  +S ++L  D    ++++     A +  + L  +L     KR +  + L
Sbjct: 257 RTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEAL 316
Query: 411 QHPWLSL 417
           QHP++++
Sbjct: 317 QHPYINV 323

>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map Kinase Length = 360

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 419 NSTRDE 424
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|2XS0|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 386

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 28/187 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 155 KPSNIVVKSDCTLKILDFGLARTAGTSFMMVPFVVTRYYRAPEVILGMGYKENVDIWSVG 214
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
           C   E+  G +LF            DH+    ++I ++       G    ++  +     
Sbjct: 215 CIMGEMIKGGVLFP---------GTDHIDQWNKVIEQL-------GTPCPEFMKKLQPTV 258
Query: 361 RI---RRLKF--WSLDRLLVDKYRFSETD-----AREFAEFLVPLLDFTPEKRPTAQQCL 410
           R     R K+  +S ++L  D    ++++     A +  + L  +L     KR +  + L
Sbjct: 259 RTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEAL 318
Query: 411 QHPWLSL 417
           QHP++++
Sbjct: 319 QHPYINV 325

>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 28/187 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDATLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
               E+  G +LF            DH+    ++I ++       G  S ++  +     
Sbjct: 213 VIMGEMIKGGVLFP---------GTDHIDQWNKVIEQL-------GTPSPEFMKKLQPTV 256
Query: 361 RI---RRLKF--WSLDRLLVDKYRFSETD-----AREFAEFLVPLLDFTPEKRPTAQQCL 410
           R     R K+  +S ++L  D    ++++     A +  + L  +L     KR +  + L
Sbjct: 257 RTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEAL 316
Query: 411 QHPWLSL 417
           QHP++++
Sbjct: 317 QHPYINV 323

>pdb|3O17|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform Length = 370

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 24/185 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFA--EEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F    E+ TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDCTLKILDFGLARTAGTSFMMEPEVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 359
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 213 CIMGEMVCHKILFP---GRDYI---DQWNKVIEQLGTPCPAFMKKLQPTVRNYVE----- 261
Query: 360 KRIRRLKF--WSLDRLLVDKYRFSETD-----AREFAEFLVPLLDFTPEKRPTAQQCLQH 412
               R K+  +S ++L  D    ++++     A +  + L  +L     KR +  + LQH
Sbjct: 262 ---NRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH 318
Query: 413 PWLSL 417
           P++++
Sbjct: 319 PYINV 323

>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 28/187 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDATLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
               E+  G +LF            DH+    ++I ++       G  S ++  +     
Sbjct: 213 VIMGEMIKGGVLFP---------GTDHIDQWNKVIEQL-------GTPSPEFMKKLQPTV 256
Query: 361 RI---RRLKF--WSLDRLLVDKYRFSETD-----AREFAEFLVPLLDFTPEKRPTAQQCL 410
           R     R K+  +S ++L  D    ++++     A +  + L  +L     KR +  + L
Sbjct: 257 RTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEAL 316
Query: 411 QHPWLSL 417
           QHP++++
Sbjct: 317 QHPYINV 323

>pdb|2G01|A Chain A, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors Length = 370

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 24/185 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFA--EEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F    E+ TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDCTLKILDFGLARTAGTSFMMEPEVVTRYYRAPEVILGMGYKENVDLWSVG 212
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 359
           C   E+    +LF    G+ +    D    ++E +G   P  +       + Y +     
Sbjct: 213 CIMGEMVCHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRTYVE----- 261
Query: 360 KRIRRLKF--WSLDRLLVDKYRFSETD-----AREFAEFLVPLLDFTPEKRPTAQQCLQH 412
               R K+  +S ++L  D    ++++     A +  + L  +L     KR +  + LQH
Sbjct: 262 ---NRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH 318
Query: 413 PWLSL 417
           P++++
Sbjct: 319 PYINV 323

>pdb|3R63|A Chain A, Structure Of Erk2 (Spe) Mutant (S246e) Length = 358

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 82/195 (42%), Gaps = 36/195 (18%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 295
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 149 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 208
Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+  ++    
Sbjct: 209 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPEQE---- 248
Query: 356 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 409
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 249 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 305
Query: 410 LQHPWLSLRNSTRDE 424
           L HP+L       DE
Sbjct: 306 LAHPYLEQYYDPSDE 320

>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l) Activating Mutant Length = 367

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A     +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 159 KPSNLAVNEDCELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 218
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 219 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 272
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 273 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 318
Query: 419 NSTRDE 424
           +   DE
Sbjct: 319 HDPDDE 324

>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s) Activating Mutant Form-A Length = 367

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A     +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 159 KPSNLAVNEDCELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 218
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 219 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 272
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 273 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 318
Query: 419 NSTRDE 424
           +   DE
Sbjct: 319 HDPDDE 324

>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a) Activating Mutant Length = 367

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG A     +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 159 KPSNLAVNEDCELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 218
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 219 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 272
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 273 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 318
Query: 419 NSTRDE 424
           +   DE
Sbjct: 319 HDPDDE 324

>pdb|3MH2|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 79/186 (42%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++D+G A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDYGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 419 NSTRDE 424
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580 Length = 360

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DFG     + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDSELKILDFGLCRHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 419 NSTRDE 424
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor Length = 307

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 77/181 (42%), Gaps = 35/181 (19%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFA--EEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP+  L     + K+ DFG A   + Q A    + T  YRAPEV+L++ Y+  VD+WS  
Sbjct: 147 KPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVG 206
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIG-----KMPRKIAIGGAQSKDYFDR 355
           C   E+     LF   S      D D L  ++++IG       PR +A+           
Sbjct: 207 CIFAEMFRRKPLFRGSS------DVDQLGKILDVIGLPGEEDWPRDVALP---------- 250
Query: 356 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFA-EFLVPLLDFTPEKRPTAQQCLQHPW 414
                   R  F S     ++K+    TD  E   + L+  L F P KR +A   L HP+
Sbjct: 251 --------RQAFHSKSAQPIEKF---VTDIDELGKDLLLKCLTFNPAKRISAYSALSHPY 299
Query: 415 L 415
Sbjct: 300 F 300

>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Indirubin 3'-Monoxime Bound Length = 313

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 32/182 (17%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMW 297
           KP+  L   D   K+ DFG A RA     + +  E+ T  YRAP+V++ +  YS SVD+W
Sbjct: 146 KPQNLLINSDGALKLADFGLA-RAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIW 204
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ TG  LF      G  +D+           ++P+  +I G  +        
Sbjct: 205 SIGCIFAEMITGKPLFP-----GVTDDD-----------QLPKIFSILGTPNPR------ 242
Query: 358 DLKRIRRLKFWSLDRLLV-DKYRFSETD---AREFAEFLVPLLDFTPEKRPTAQQCLQHP 413
           +  +++ L  W      V +K  +S       +E  + L  +L F P KR +A+  + HP
Sbjct: 243 EWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNHP 302
Query: 414 WL 415
           + 
Sbjct: 303 YF 304

>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 326

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 77/181 (42%), Gaps = 35/181 (19%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFA--EEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP+  L     + K+ DFG A   + Q A    + T  YRAPEV+L++ Y+  VD+WS  
Sbjct: 147 KPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVG 206
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIG-----KMPRKIAIGGAQSKDYFDR 355
           C   E+     LF   S      D D L  ++++IG       PR +A+           
Sbjct: 207 CIFAEMFRRKPLFRGSS------DVDQLGKILDVIGLPGEEDWPRDVALP---------- 250
Query: 356 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFA-EFLVPLLDFTPEKRPTAQQCLQHPW 414
                   R  F S     ++K+    TD  E   + L+  L F P KR +A   L HP+
Sbjct: 251 --------RQAFHSKSAQPIEKFV---TDIDELGKDLLLKCLTFNPAKRISAYSALSHPY 299
Query: 415 L 415
Sbjct: 300 F 300

>pdb|3ELJ|A Chain A, Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine Inhibitor Length = 369

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 10/178 (5%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 158 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDLWSVG 217
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 359
           C   E+    +LF    G+ +    D    ++E +G   P  +       + Y +     
Sbjct: 218 CIMGEMVCHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKY 271
Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 417
                 K +  D L       ++  A +  + L  +L     KR +  + LQHP++++
Sbjct: 272 AGYSFEKLFP-DVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINV 328

>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 308

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 77/181 (42%), Gaps = 35/181 (19%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFA--EEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP+  L     + K+ DFG A   + Q A    + T  YRAPEV+L++ Y+  VD+WS  
Sbjct: 147 KPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVG 206
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIG-----KMPRKIAIGGAQSKDYFDR 355
           C   E+     LF   S      D D L  ++++IG       PR +A+           
Sbjct: 207 CIFAEMFRRKPLFRGSS------DVDQLGKILDVIGLPGEEDWPRDVALP---------- 250
Query: 356 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFA-EFLVPLLDFTPEKRPTAQQCLQHPW 414
                   R  F S     ++K+    TD  E   + L+  L F P KR +A   L HP+
Sbjct: 251 --------RQAFHSKSAQPIEKF---VTDIDELGKDLLLKCLTFNPAKRISAYSALSHPY 299
Query: 415 L 415
Sbjct: 300 F 300

>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Adp Bound Length = 311

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 32/182 (17%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMW 297
           KP+  L   D   K+ DFG A RA     + +  E+ T  YRAP+V++ +  YS SVD+W
Sbjct: 146 KPQNLLINSDGALKLADFGLA-RAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIW 204
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ TG  LF      G  +D+           ++P+  +I G  +        
Sbjct: 205 SIGCIFAEMITGKPLFP-----GVTDDD-----------QLPKIFSILGTPNPR------ 242
Query: 358 DLKRIRRLKFWSLDRLLV-DKYRFSETD---AREFAEFLVPLLDFTPEKRPTAQQCLQHP 413
           +  +++ L  W      V +K  +S       +E  + L  +L F P KR +A+  + HP
Sbjct: 243 EWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNHP 302
Query: 414 WL 415
           + 
Sbjct: 303 YF 304

>pdb|3O8P|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif Mutants In Response To Inhibitor Binding Length = 360

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++ FG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILGFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 419 NSTRDE 424
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|3PZE|A Chain A, Jnk1 In Complex With Inhibitor Length = 358

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 10/178 (5%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 147 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDLWSVG 206
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 359
           C   E+    +LF    G+ +    D    ++E +G   P  +       + Y +     
Sbjct: 207 CIMGEMVCHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKY 260
Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 417
                 K +  D L       ++  A +  + L  +L     KR +  + LQHP++++
Sbjct: 261 AGYSFEKLFP-DVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINV 317

>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis Length = 394

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 23/177 (12%)
Query: 243 KPERCL-DGIDMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWS 298
           KP+  L D      K++DFG+A    A +     I +R YRAPE+I  A  Y+ ++D+WS
Sbjct: 168 KPQNLLLDPPSGVLKLIDFGSAKILIAGEPNVSXICSRYYRAPELIFGATNYTTNIDIWS 227
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
             C   EL  G  LF  +SG       D L  +++++G   R+       + +Y +    
Sbjct: 228 TGCVMAELMQGQPLFPGESGI------DQLVEIIKVLGTPSREQI--KTMNPNYMEH--K 277
Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
             +IR   F  +         F      +  + +  LL++TP  R TA + L HP+ 
Sbjct: 278 FPQIRPHPFSKV---------FRPRTPPDAIDLISRLLEYTPSARLTAIEALCHPFF 325

>pdb|3GI3|A Chain A, Crystal Structure Of A N-Phenyl-N'-Naphthylurea Analog In Complex With P38 Map Kinase Length = 360

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++DF  A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDFYLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 419 NSTRDE 424
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|3MH0|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++D G A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDAGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 419 NSTRDE 424
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-320 In Complex With Atp Length = 320

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 19/171 (11%)
Query: 44  LGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAAL-HEIEVLSAVADGDPSNEKCVI 101
           LG G FS V LA D RT   VA+K I K A +  + ++ +EI VL  +   +      ++
Sbjct: 26  LGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGKEGSMENEIAVLHKIKHPN------IV 79
Query: 102 RLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYL 159
            L D ++  G    HL ++++ +  G+   R+++   Y   E +  R I + +L  + YL
Sbjct: 80  ALDDIYESGG----HLYLIMQLVSGGELFDRIVEKGFYT--ERDASRLIFQ-VLDAVKYL 132
Query: 160 HRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTST 210
           H +LGI+H DLKPEN+L  S  + SK  I       +E P GS+   +  T
Sbjct: 133 H-DLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDP-GSVLSTACGT 181

>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-320 In Complex With Atp Length = 320

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 45/165 (27%)
Query: 276 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI 335
           T  Y APEV+ +  YS +VD WS    A+ L  G   + P     F ++ D  A + E I
Sbjct: 181 TPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCG---YPP-----FYDEND--AKLFEQI 230
Query: 336 GKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPL 395
            K   +          Y+D   D  +                            +F+  L
Sbjct: 231 LKAEYEF------DSPYWDDISDSAK----------------------------DFIRHL 256
Query: 396 LDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEKVDVGMSK 440
           ++  PEKR T +Q LQHPW++  ++  D+  ++S  E++    +K
Sbjct: 257 MEKDPEKRFTCEQALQHPWIA-GDTALDKNIHQSVSEQIKKNFAK 300

>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-315 In Complex With Atp Length = 315

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 19/171 (11%)
Query: 44  LGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAAL-HEIEVLSAVADGDPSNEKCVI 101
           LG G FS V LA D RT   VA+K I K A +  + ++ +EI VL  +   +      ++
Sbjct: 26  LGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGKEGSMENEIAVLHKIKHPN------IV 79
Query: 102 RLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYL 159
            L D ++  G    HL ++++ +  G+   R+++   Y   E +  R I + +L  + YL
Sbjct: 80  ALDDIYESGG----HLYLIMQLVSGGELFDRIVEKGFYT--ERDASRLIFQ-VLDAVKYL 132
Query: 160 HRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTST 210
           H +LGI+H DLKPEN+L  S  + SK  I       +E P GS+   +  T
Sbjct: 133 H-DLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDP-GSVLSTACGT 181

>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-315 In Complex With Atp Length = 315

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 45/165 (27%)
Query: 276 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI 335
           T  Y APEV+ +  YS +VD WS    A+ L  G   + P     F ++ D  A + E I
Sbjct: 181 TPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCG---YPP-----FYDEND--AKLFEQI 230
Query: 336 GKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPL 395
            K   +          Y+D   D  +                            +F+  L
Sbjct: 231 LKAEYEF------DSPYWDDISDSAK----------------------------DFIRHL 256
Query: 396 LDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEKVDVGMSK 440
           ++  PEKR T +Q LQHPW++  ++  D+  ++S  E++    +K
Sbjct: 257 MEKDPEKRFTCEQALQHPWIA-GDTALDKNIHQSVSEQIKKNFAK 300

>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat Length = 332

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 87/171 (50%), Gaps = 19/171 (11%)
Query: 44  LGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAAL-HEIEVLSAVADGDPSNEKCVI 101
           LG G FS V LA D RT   VA+K I K A +  + ++ +EI VL  +          ++
Sbjct: 26  LGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKI------KHPNIV 79
Query: 102 RLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYL 159
            L D ++  G    HL ++++ +  G+   R+++   Y   E +  R I + +L  + YL
Sbjct: 80  ALDDIYESGG----HLYLIMQLVSGGELFDRIVEKGFYT--ERDASRLIFQ-VLDAVKYL 132
Query: 160 HRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTST 210
           H +LGI+H DLKPEN+L  S  + SK  I       +E P GS+   +  T
Sbjct: 133 H-DLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDP-GSVLSTACGT 181

>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat Length = 332

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 45/169 (26%)
Query: 276 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI 335
           T  Y APEV+ +  YS +VD WS    A+ L  G   + P     F ++ D  A + E I
Sbjct: 181 TPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCG---YPP-----FYDEND--AKLFEQI 230
Query: 336 GKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPL 395
            K   +          Y+D   D  +                            +F+  L
Sbjct: 231 LKAEYEF------DSPYWDDISDSAK----------------------------DFIRHL 256
Query: 396 LDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEKVDVGMSKLEIK 444
           ++  PEKR T +Q LQHPW++  ++  D+  ++S  E++    +K + K
Sbjct: 257 MEKDPEKRFTCEQALQHPWIA-GDTALDKNIHQSVSEQIKKNFAKSKWK 304

>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-293 In Complex With Atp Length = 293

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 87/171 (50%), Gaps = 19/171 (11%)
Query: 44  LGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAAL-HEIEVLSAVADGDPSNEKCVI 101
           LG G FS V LA D RT   VA+K I K A +  + ++ +EI VL  +          ++
Sbjct: 26  LGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGKEGSMENEIAVLHKI------KHPNIV 79
Query: 102 RLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYL 159
            L D ++  G    HL ++++ +  G+   R+++   Y   E +  R I + +L  + YL
Sbjct: 80  ALDDIYESGG----HLYLIMQLVSGGELFDRIVEKGFYT--ERDASRLIFQ-VLDAVKYL 132
Query: 160 HRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTST 210
           H +LGI+H DLKPEN+L  S  + SK  I       +E P GS+   +  T
Sbjct: 133 H-DLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDP-GSVLSTACGT 181

>pdb|3MH1|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++D G A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDGGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 419 NSTRDE 424
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|3MH3|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 301
           KP       D   K++D G A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDRGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 360 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 419 NSTRDE 424
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|2IZR|A Chain A, Structure Of Casein Kinase Gamma 3 In Complex With Inhibitor Length = 330

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 12/149 (8%)
Query: 29  VGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSA 88
           +G L  G  +   +K+G G F  + L  +  T+ YVA+K++   ++  Q  L E      
Sbjct: 2   MGVLMVGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHL-EYRFYKQ 60
Query: 89  VADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREI 148
           +  GD          I    + GP G++  MVLE LG SL  L      +   L  V  I
Sbjct: 61  LGSGDG---------IPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCD-RTFSLKTVLMI 110
Query: 149 CKYILTGLDYLHRELGIIHTDLKPENILL 177
              +++ ++Y+H +  +I+ D+KPEN L+
Sbjct: 111 AIQLISRMEYVHSK-NLIYRDVKPENFLI 138

>pdb|2CHL|A Chain A, Structure Of Casein Kinase 1 Gamma 3 Length = 351

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 12/149 (8%)
Query: 29  VGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSA 88
           +G L  G  +   +K+G G F  + L  +  T+ YVA+K++   ++  Q  L E      
Sbjct: 23  MGVLMVGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHL-EYRFYKQ 81
Query: 89  VADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREI 148
           +  GD          I    + GP G++  MVLE LG SL  L      +   L  V  I
Sbjct: 82  LGSGDG---------IPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCD-RTFSLKTVLMI 131
Query: 149 CKYILTGLDYLHRELGIIHTDLKPENILL 177
              +++ ++Y+H +  +I+ D+KPEN L+
Sbjct: 132 AIQLISRMEYVHSK-NLIYRDVKPENFLI 159

>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With Ind E804 Length = 324

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 24/178 (13%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVIL-RAGYSFSVDMW 297
           KP+  L       K+ DFG A RA     K +  E+ T  YR P+++L    YS  +DMW
Sbjct: 127 KPQNLLINERGELKLADFGLA-RAKSIPTKTYDNEVVTLWYRPPDILLGSTDYSTQIDMW 185
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
              C  +E+ATG  LF P S       E+ L  +  ++G  P +    G  S + F  + 
Sbjct: 186 GVGCIFYEMATGRPLF-PGSTV-----EEQLHFIFRILG-TPTEETWPGILSNEEFKTYN 238
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
             K       +  + LL    R  ++D    A+ L  LL F    R +A+  ++HP+ 
Sbjct: 239 YPK-------YRAEALLSHAPRL-DSDG---ADLLTKLLQFEGRNRISAEDAMKHPFF 285

>pdb|4HGL|A Chain A, Crystal Structure Of Ck1g3 With Compound 1 Length = 330

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 12/148 (8%)
Query: 30  GDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAV 89
           G L  G  +   +K+G G F  + L  +  T+ YVA+K++   ++  Q  L E      +
Sbjct: 3   GVLMVGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHL-EYRFYKQL 61
Query: 90  ADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREIC 149
             GD          I    + GP G++  MVLE LG SL  L      +   L  V  I 
Sbjct: 62  GSGDG---------IPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCD-RTFSLKTVLMIA 111
Query: 150 KYILTGLDYLHRELGIIHTDLKPENILL 177
             +++ ++Y+H +  +I+ D+KPEN L+
Sbjct: 112 IQLISRMEYVHSK-NLIYRDVKPENFLI 138

>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 8/147 (5%)
Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADGD 93
           RY    ++G G +  V+ A D  +  +VALK   +         + + E+ +L  +   +
Sbjct: 5   RYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLEAFE 64
Query: 94  PSNEKCVIRLIDHFKHAGPNGQ-HLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYI 152
             N   V+RL+D    +  + +  + +V E +   L   +  +   GL    ++++ +  
Sbjct: 65  HPN---VVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQF 121
Query: 153 LTGLDYLHRELGIIHTDLKPENILLVS 179
           L GLD+LH    I+H DLKPENIL+ S
Sbjct: 122 LRGLDFLHANC-IVHRDLKPENILVTS 147

>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 76/179 (42%), Gaps = 31/179 (17%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEE--IQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KPE  L       K+ DFG A   + Q A +  + T  YRAPEV+L++ Y+  VDMWS  
Sbjct: 139 KPENILVTSGGTVKLADFGLARIYSYQMALDPVVVTLWYRAPEVLLQSTYATPVDMWSVG 198
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
           C   E+     LF   S      + D L  + +LIG  P          +D + R   L 
Sbjct: 199 CIFAEMFRRKPLFCGNS------EADQLGKIFDLIGLPP----------EDDWPRDVSLP 242
Query: 361 RIRRLKFWSLDRLLVDKYRFSETDAREF----AEFLVPLLDFTPEKRPTAQQCLQHPWL 415
           R                 R  ++   E     A+ L+ +L F P KR +A + LQH +L
Sbjct: 243 R---------GAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSYL 292

>pdb|2I6L|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 6 (Mapk6) Length = 320

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 25/180 (13%)
Query: 252 DMRCKVVDFGNACRANKQFA------EEIQTRQYRAPEVILRAG-YSFSVDMWSFACTAF 304
           D+  K+ DFG A   +  ++      E + T+ YR+P ++L    Y+ ++DMW+  C   
Sbjct: 157 DLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFA 216
Query: 305 ELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRR 364
           E+ TG  LFA         + + + L++E I  +  +            DR   L  I  
Sbjct: 217 EMLTGKTLFAG------AHELEQMQLILESIPVVHEE------------DRQELLSVIPV 258
Query: 365 LKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE 424
                +        +     +RE  +FL  +L F+P  R TA++ L HP++S+ +   DE
Sbjct: 259 YIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALSHPYMSIYSFPMDE 318

>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 8/147 (5%)
Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADGD 93
           RY    ++G G +  V+ A D  +  +VALK   +         + + E+ +L  +   +
Sbjct: 5   RYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLEAFE 64
Query: 94  PSNEKCVIRLIDHFKHAGPNGQ-HLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYI 152
             N   V+RL+D    +  + +  + +V E +   L   +  +   GL    ++++ +  
Sbjct: 65  HPN---VVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQF 121
Query: 153 LTGLDYLHRELGIIHTDLKPENILLVS 179
           L GLD+LH    I+H DLKPENIL+ S
Sbjct: 122 LRGLDFLHANC-IVHRDLKPENILVTS 147

>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 75/179 (41%), Gaps = 31/179 (17%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KPE  L       K+ DFG A   + Q   A  + T  YRAPEV+L++ Y+  VDMWS  
Sbjct: 139 KPENILVTSGGTVKLADFGLARIYSYQMALAPVVVTLWYRAPEVLLQSTYATPVDMWSVG 198
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
           C   E+     LF   S      + D L  + +LIG  P          +D + R   L 
Sbjct: 199 CIFAEMFRRKPLFCGNS------EADQLGKIFDLIGLPP----------EDDWPRDVSLP 242
Query: 361 RIRRLKFWSLDRLLVDKYRFSETDAREF----AEFLVPLLDFTPEKRPTAQQCLQHPWL 415
           R                 R  ++   E     A+ L+ +L F P KR +A + LQH +L
Sbjct: 243 R---------GAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSYL 292

>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 8/147 (5%)
Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADGD 93
           RY    ++G G +  V+ A D  +  +VALK   +         + + E+ +L  +   +
Sbjct: 5   RYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLEAFE 64
Query: 94  PSNEKCVIRLIDHFKHAGPNGQ-HLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYI 152
             N   V+RL+D    +  + +  + +V E +   L   +  +   GL    ++++ +  
Sbjct: 65  HPN---VVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQF 121
Query: 153 LTGLDYLHRELGIIHTDLKPENILLVS 179
           L GLD+LH    I+H DLKPENIL+ S
Sbjct: 122 LRGLDFLHANC-IVHRDLKPENILVTS 147

>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 75/179 (41%), Gaps = 31/179 (17%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFA--EEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KPE  L       K+ DFG A   + Q A    + T  YRAPEV+L++ Y+  VDMWS  
Sbjct: 139 KPENILVTSGGTVKLADFGLARIYSYQMALFPVVVTLWYRAPEVLLQSTYATPVDMWSVG 198
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
           C   E+     LF   S      + D L  + +LIG  P          +D + R   L 
Sbjct: 199 CIFAEMFRRKPLFCGNS------EADQLGKIFDLIGLPP----------EDDWPRDVSLP 242
Query: 361 RIRRLKFWSLDRLLVDKYRFSETDAREF----AEFLVPLLDFTPEKRPTAQQCLQHPWL 415
           R                 R  ++   E     A+ L+ +L F P KR +A + LQH +L
Sbjct: 243 R---------GAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSYL 292

>pdb|2YCR|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv976 Length = 323

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 34/157 (21%)
Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKS------AAQFAQAALH---EIEVLSA 88
           YI  + LG G    V LA++ +T   VA+KI         +A+ A  AL+   EIE+L  
Sbjct: 12  YIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKK 71
Query: 89  VADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVR 146
           +      N  C+I++ + F     + +   +VLE +  G+   +++   R K        
Sbjct: 72  L------NHPCIIKIKNFF-----DAEDYYIVLELMEGGELFDKVVGNKRLK-------E 113
Query: 147 EICKY----ILTGLDYLHRELGIIHTDLKPENILLVS 179
             CK     +L  + YLH E GIIH DLKPEN+LL S
Sbjct: 114 ATCKLYFYQMLLAVQYLH-ENGIIHRDLKPENVLLSS 149

>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma Gondii, Tgme49_018720 Length = 285

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 95/199 (47%), Gaps = 28/199 (14%)
Query: 20  RKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSY--VALKIQKSAAQFAQ 77
           R+  Y    + DLF     I +RKLG G F  V L  + R+S    V   I K  +Q   
Sbjct: 11  RENLYFQGTIDDLF-----IFKRKLGSGAFGDVHLV-EERSSGLERVIKTINKDRSQVPM 64
Query: 78  AALH-EIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIK- 133
             +  EIEVL ++   D  N   +I++ + F+    +  ++ +V+E    G+ L R++  
Sbjct: 65  EQIEAEIEVLKSL---DHPN---IIKIFEVFE----DYHNMYIVMETCEGGELLERIVSA 114
Query: 134 YSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR---S 190
            +R K L    V E+ K ++  L Y H +  ++H DLKPENIL   T   S  PI+    
Sbjct: 115 QARGKALSEGYVAELMKQMMNALAYFHSQ-HVVHKDLKPENILFQDTSPHS--PIKIIDF 171
Query: 191 GLTPILERPEGSINGGSTS 209
           GL  + +  E S N   T+
Sbjct: 172 GLAELFKSDEHSTNAAGTA 190

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 18/147 (12%)
Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI----QKSAAQ--FAQAALHEIEVLSAVA 90
           RY     LG GQF+ V+ A D  T+  VA+K      +S A+    + AL EI++L  ++
Sbjct: 11  RYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELS 70
Query: 91  DGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICK 150
             +      +I L+D F H      ++ +V +F+   L  +IK +    L  + ++    
Sbjct: 71  HPN------IIGLLDAFGHKS----NISLVFDFMETDLEVIIKDNSLV-LTPSHIKAYML 119
Query: 151 YILTGLDYLHRELGIIHTDLKPENILL 177
             L GL+YLH+   I+H DLKP N+LL
Sbjct: 120 MTLQGLEYLHQHW-ILHRDLKPNNLLL 145

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 243 KPERCLDGIDMRCKVVDFGNA---CRANKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWS 298
           KP   L   +   K+ DFG A      N+ +  ++ TR YRAPE++  A  Y   VDMW+
Sbjct: 139 KPNNLLLDENGVLKLADFGLAKSFGSPNRAYXHQVVTRWYRAPELLFGARMYGVGVDMWA 198
Query: 299 FACTAFEL 306
             C   EL
Sbjct: 199 VGCILAEL 206

>pdb|2W0J|A Chain A, Crystal Structure Of Chk2 In Complex With Nsc 109555, A Specific Inhibitor Length = 323

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 34/157 (21%)
Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKS------AAQFAQAALH---EIEVLSA 88
           YI  + LG G    V LA++ +T   VA+KI         +A+ A  AL+   EIE+L  
Sbjct: 12  YIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKK 71
Query: 89  VADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVR 146
           +      N  C+I++ + F     + +   +VLE +  G+   +++   R K        
Sbjct: 72  L------NHPCIIKIKNFF-----DAEDYYIVLELMEGGELFDKVVGNKRLK-------E 113
Query: 147 EICKY----ILTGLDYLHRELGIIHTDLKPENILLVS 179
             CK     +L  + YLH E GIIH DLKPEN+LL S
Sbjct: 114 ATCKLYFYQMLLAVQYLH-ENGIIHRDLKPENVLLSS 149

>pdb|2CN5|A Chain A, Crystal Structure Of Human Chk2 In Complex With Adp Length = 329

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 34/157 (21%)
Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKS------AAQFAQAALH---EIEVLSA 88
           YI  + LG G    V LA++ +T   VA+KI         +A+ A  AL+   EIE+L  
Sbjct: 18  YIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKK 77
Query: 89  VADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVR 146
           +      N  C+I++ + F     + +   +VLE +  G+   +++   R K        
Sbjct: 78  L------NHPCIIKIKNFF-----DAEDYYIVLELMEGGELFDKVVGNKRLK-------E 119
Query: 147 EICKY----ILTGLDYLHRELGIIHTDLKPENILLVS 179
             CK     +L  + YLH E GIIH DLKPEN+LL S
Sbjct: 120 ATCKLYFYQMLLAVQYLH-ENGIIHRDLKPENVLLSS 155

>pdb|2YCF|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv1531 Length = 322

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 34/157 (21%)
Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKS------AAQFAQAALH---EIEVLSA 88
           YI  + LG G    V LA++ +T   VA+KI         +A+ A  AL+   EIE+L  
Sbjct: 12  YIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKK 71
Query: 89  VADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVR 146
           +      N  C+I++ + F     + +   +VLE +  G+   +++   R K        
Sbjct: 72  L------NHPCIIKIKNFF-----DAEDYYIVLELMEGGELFDKVVGNKRLK-------E 113
Query: 147 EICKY----ILTGLDYLHRELGIIHTDLKPENILLVS 179
             CK     +L  + YLH E GIIH DLKPEN+LL S
Sbjct: 114 ATCKLYFYQMLLAVQYLH-ENGIIHRDLKPENVLLSS 149

>pdb|2XK9|A Chain A, Structural Analysis Of Checkpoint Kinase 2 (Chk2) In Complex With Inhibitor Pv1533 Length = 322

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 34/157 (21%)
Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKS------AAQFAQAALH---EIEVLSA 88
           YI  + LG G    V LA++ +T   VA+KI         +A+ A  AL+   EIE+L  
Sbjct: 11  YIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKK 70
Query: 89  VADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVR 146
           +      N  C+I++ + F     + +   +VLE +  G+   +++   R K        
Sbjct: 71  L------NHPCIIKIKNFF-----DAEDYYIVLELMEGGELFDKVVGNKRLK-------E 112
Query: 147 EICKY----ILTGLDYLHRELGIIHTDLKPENILLVS 179
             CK     +L  + YLH E GIIH DLKPEN+LL S
Sbjct: 113 ATCKLYFYQMLLAVQYLH-ENGIIHRDLKPENVLLSS 148

>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3 Length = 308

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 75/179 (41%), Gaps = 31/179 (17%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFA--EEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KPE  L       K+ DFG A   + Q A    + T  YRAPEV+L++ Y+  VDMWS  
Sbjct: 147 KPENILVTSGGTVKLADFGLARIYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVG 206
Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
           C   E+     LF   S      + D L  + +LIG  P          +D + R   L 
Sbjct: 207 CIFAEMFRRKPLFCGNS------EADQLGKIFDLIGLPP----------EDDWPRDVSLP 250
Query: 361 RIRRLKFWSLDRLLVDKYRFSETDAREF----AEFLVPLLDFTPEKRPTAQQCLQHPWL 415
           R                 R  ++   E     A+ L+ +L F P KR +A + LQH +L
Sbjct: 251 R---------GAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSYL 300

>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain Length = 283

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 69/144 (47%), Gaps = 13/144 (9%)
Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI--QKSAAQFAQAALHEIEVLSAVADGD 93
           G Y   + LG G F  V LAY T T   VALKI  +K  A+       E E+        
Sbjct: 14  GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRH 73
Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYIL 153
           P     +I+L D  K    +   + MV+E+ G+ L   I   R K  E  + R   + I+
Sbjct: 74  PH----IIKLYDVIK----SKDEIIMVIEYAGNELFDYI-VQRDKMSE-QEARRFFQQII 123
Query: 154 TGLDYLHRELGIIHTDLKPENILL 177
           + ++Y HR   I+H DLKPEN+LL
Sbjct: 124 SAVEYCHRH-KIVHRDLKPENLLL 146

>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast Amp-Activated Protein Kinase Snf1 Length = 275

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 69/144 (47%), Gaps = 13/144 (9%)
Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI--QKSAAQFAQAALHEIEVLSAVADGD 93
           G Y   + LG G F  V LAY T T   VALKI  +K  A+       E E+        
Sbjct: 13  GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRH 72
Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYIL 153
           P     +I+L D  K    +   + MV+E+ G+ L   I   R K  E  + R   + I+
Sbjct: 73  PH----IIKLYDVIK----SKDEIIMVIEYAGNELFDYI-VQRDKMSE-QEARRFFQQII 122
Query: 154 TGLDYLHRELGIIHTDLKPENILL 177
           + ++Y HR   I+H DLKPEN+LL
Sbjct: 123 SAVEYCHRH-KIVHRDLKPENLLL 145

>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of The Saccharomyces Cerevisiae Ampk Homolog Snf1 Length = 271

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 69/144 (47%), Gaps = 13/144 (9%)
Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI--QKSAAQFAQAALHEIEVLSAVADGD 93
           G Y   + LG G F  V LAY T T   VALKI  +K  A+       E E+        
Sbjct: 4   GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRH 63
Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYIL 153
           P     +I+L D  K    +   + MV+E+ G+ L   I   R K  E  + R   + I+
Sbjct: 64  PH----IIKLYDVIK----SKDEIIMVIEYAGNELFDYI-VQRDKMSE-QEARRFFQQII 113
Query: 154 TGLDYLHRELGIIHTDLKPENILL 177
           + ++Y HR   I+H DLKPEN+LL
Sbjct: 114 SAVEYCHRH-KIVHRDLKPENLLL 136

>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast Snf1 Length = 274

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 69/144 (47%), Gaps = 13/144 (9%)
Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI--QKSAAQFAQAALHEIEVLSAVADGD 93
           G Y   + LG G F  V LAY T T   VALKI  +K  A+       E E+        
Sbjct: 8   GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRH 67
Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYIL 153
           P     +I+L D  K    +   + MV+E+ G+ L   I   R K  E  + R   + I+
Sbjct: 68  PH----IIKLYDVIK----SKDEIIMVIEYAGNELFDYI-VQRDKMSE-QEARRFFQQII 117
Query: 154 TGLDYLHRELGIIHTDLKPENILL 177
           + ++Y HR   I+H DLKPEN+LL
Sbjct: 118 SAVEYCHRH-KIVHRDLKPENLLL 140

>pdb|3I6U|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 419

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 34/157 (21%)
Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKS------AAQFAQAALH---EIEVLSA 88
           YI  + LG G    V LA++ +T   VA++I         +A+ A  AL+   EIE+L  
Sbjct: 137 YIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKK 196
Query: 89  VADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVR 146
           +      N  C+I++ + F     + +   +VLE +  G+   +++   R K        
Sbjct: 197 L------NHPCIIKIKNFF-----DAEDYYIVLELMEGGELFDKVVGNKRLK-------E 238
Query: 147 EICKY----ILTGLDYLHRELGIIHTDLKPENILLVS 179
             CK     +L  + YLH E GIIH DLKPEN+LL S
Sbjct: 239 ATCKLYFYQMLLAVQYLH-ENGIIHRDLKPENVLLSS 274

>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tgme49_101440, In Presence Of Calcium Length = 508

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 75/148 (50%), Gaps = 18/148 (12%)
Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI----QKSAAQFAQAALHEIEVLSAVADG 92
           RY  QR LG G F  V L  D  T    A+K+    Q       ++ L E+++L  +   
Sbjct: 51  RYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQL--- 107
Query: 93  DPSNEKCVIRLIDHFKHAGPNGQHLCMVLE-FLGDSLLRLIKYSRYKGLELNKVREICKY 151
           D  N   +++L + F+  G    +  +V E + G  L   I  SR +  E++  R I + 
Sbjct: 108 DHPN---IMKLYEFFEDKG----YFYLVGEVYTGGELFDEI-ISRKRFSEVDAAR-IIRQ 158
Query: 152 ILTGLDYLHRELGIIHTDLKPENILLVS 179
           +L+G+ Y+H+   I+H DLKPEN+LL S
Sbjct: 159 VLSGITYMHKN-KIVHRDLKPENLLLES 185

>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From Toxoplasma Gondii, Tgme49.101440 Length = 507

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 75/148 (50%), Gaps = 18/148 (12%)
Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI----QKSAAQFAQAALHEIEVLSAVADG 92
           RY  QR LG G F  V L  D  T    A+K+    Q       ++ L E+++L  +   
Sbjct: 50  RYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQL--- 106
Query: 93  DPSNEKCVIRLIDHFKHAGPNGQHLCMVLE-FLGDSLLRLIKYSRYKGLELNKVREICKY 151
           D  N   +++L + F+  G    +  +V E + G  L   I  SR +  E++  R I + 
Sbjct: 107 DHPN---IMKLYEFFEDKG----YFYLVGEVYTGGELFDEI-ISRKRFSEVDAAR-IIRQ 157
Query: 152 ILTGLDYLHRELGIIHTDLKPENILLVS 179
           +L+G+ Y+H+   I+H DLKPEN+LL S
Sbjct: 158 VLSGITYMHKN-KIVHRDLKPENLLLES 184

>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase 1d Length = 334

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 76/148 (51%), Gaps = 16/148 (10%)
Query: 41  QRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAAL-HEIEVLSAVADGDPSNEK 98
           +  LG G FS V LA +  T    A+K I K A +  ++++ +EI VL  +        +
Sbjct: 27  KETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKI------KHE 80
Query: 99  CVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNK-VREICKYILTGLD 157
            ++ L D ++   PN  +L M L   G+   R+++    KG    K    + + +L  + 
Sbjct: 81  NIVALEDIYE--SPNHLYLVMQLVSGGELFDRIVE----KGFYTEKDASTLIRQVLDAVY 134
Query: 158 YLHRELGIIHTDLKPENILLVSTIDPSK 185
           YLHR +GI+H DLKPEN+L  S  + SK
Sbjct: 135 YLHR-MGIVHRDLKPENLLYYSQDEESK 161

>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420 Length = 504

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 28/158 (17%)
Query: 35  GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI--------------QKSAAQFAQAAL 80
           G  Y   RKLG G +  V L  +    S  A+K+               K+  +F +   
Sbjct: 35  GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIY 94
Query: 81  HEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKG 139
           +EI +L ++   D  N   +I+L D F+    + ++  +V EF  G  L   I  +R+K 
Sbjct: 95  NEISLLKSL---DHPN---IIKLFDVFE----DKKYFYLVTEFYEGGELFEQI-INRHKF 143
Query: 140 LELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
            E +    I K IL+G+ YLH+   I+H D+KPENILL
Sbjct: 144 DECDAAN-IMKQILSGICYLHKH-NIVHRDIKPENILL 179

>pdb|3I6W|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 443

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 34/157 (21%)
Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKS------AAQFAQAALH---EIEVLSA 88
           YI  + LG G    V LA++ +T   VA++I         +A+ A  AL+   EIE+L  
Sbjct: 151 YIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKK 210
Query: 89  VADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVR 146
           +      N  C+I++ + F     + +   +VLE +  G+   +++   R K        
Sbjct: 211 L------NHPCIIKIKNFF-----DAEDYYIVLELMEGGELFDKVVGNKRLK-------E 252
Query: 147 EICKY----ILTGLDYLHRELGIIHTDLKPENILLVS 179
             CK     +L  + YLH E GIIH DLKPEN+LL S
Sbjct: 253 ATCKLYFYQMLLAVQYLH-ENGIIHRDLKPENVLLSS 288

>pdb|3N9X|A Chain A, Crystal Structure Of Map Kinase From Plasmodium Berghei, Pb000659.00.0 Length = 432

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 80/221 (36%), Gaps = 59/221 (26%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRAN-------------------------KQFAEEIQTR 277
           KP  CL   D   KV DFG A   N                         KQ    + TR
Sbjct: 156 KPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTR 215
Query: 278 QYRAPEVI-LRAGYSFSVDMWSFAC-----------------TAFELATGDMLF--APKS 317
            YRAPE+I L+  Y+ S+D+WS  C                   F L  G   F  +P  
Sbjct: 216 WYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHINDPTNRFPLFPGSSCFPLSPDR 275
Query: 318 GQGFCEDE---DHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLL 374
                 ++   D L ++  +I          G  ++D        + I+ +K +   + +
Sbjct: 276 NSKKVHEKSNRDQLNIIFNII----------GTPTEDDLKNINKPEVIKYIKLFPHRKPI 325
Query: 375 VDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
             K ++    + +    L  +L F P KR T  Q L HP+L
Sbjct: 326 NLKQKYPSI-SDDGINLLESMLKFNPNKRITIDQALDHPYL 365

>pdb|3UYS|A Chain A, Crystal Structure Of Apo Human Ck1d Length = 296

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 14/144 (9%)
Query: 35  GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALH-EIEVLSAVADGD 93
           G RY   RK+G G F  ++L  D      VA+K++    +  Q  +  +I  +     G 
Sbjct: 8   GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGI 67
Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYIL 153
           P+   C           G  G +  MV+E LG SL  L  +   K   L  V  +   ++
Sbjct: 68  PTIRWC-----------GAEGDYNVMVMELLGPSLEDLFNFCSRK-FSLKTVLLLADQMI 115
Query: 154 TGLDYLHRELGIIHTDLKPENILL 177
           + ++Y+H +   IH D+KP+N L+
Sbjct: 116 SRIEYIHSK-NFIHRDVKPDNFLM 138

>pdb|1CKJ|A Chain A, Casein Kinase I Delta Truncation Mutant Containing Residues 1-317 Complex With Bound Tungstate Length = 317

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 14/144 (9%)
Query: 35  GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALH-EIEVLSAVADGD 93
           G RY   RK+G G F  ++L  D      VA+K++    +  Q  +  +I  +     G 
Sbjct: 6   GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGI 65
Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYIL 153
           P+   C           G  G +  MV+E LG SL  L  +   K   L  V  +   ++
Sbjct: 66  PTIRWC-----------GAEGDYNVMVMELLGPSLEDLFNFCSRK-FSLKTVLLLADQMI 113
Query: 154 TGLDYLHRELGIIHTDLKPENILL 177
           + ++Y+H +   IH D+KP+N L+
Sbjct: 114 SRIEYIHSK-NFIHRDVKPDNFLM 136

>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) Length = 484

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 75/148 (50%), Gaps = 18/148 (12%)
Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI----QKSAAQFAQAALHEIEVLSAVADG 92
           RY  QR LG G F  V L  D  T    A+K+    Q       ++ L E+++L  +   
Sbjct: 27  RYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQL--- 83
Query: 93  DPSNEKCVIRLIDHFKHAGPNGQHLCMVLE-FLGDSLLRLIKYSRYKGLELNKVREICKY 151
           D  N   +++L + F+  G    +  +V E + G  L   I  SR +  E++  R I + 
Sbjct: 84  DHPN---IMKLYEFFEDKG----YFYLVGEVYTGGELFDEI-ISRKRFSEVDAAR-IIRQ 134
Query: 152 ILTGLDYLHRELGIIHTDLKPENILLVS 179
           +L+G+ Y+H+   I+H DLKPEN+LL S
Sbjct: 135 VLSGITYMHKN-KIVHRDLKPENLLLES 161

>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In Complex With Sto-609 Length = 298

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 26/169 (15%)
Query: 30  GDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEI------ 83
           GD     +Y  + ++G G + +V LAY+   ++Y A+K+        QA           
Sbjct: 7   GDCVQLNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGT 66
Query: 84  ---------------EVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSL 128
                          +V   +A     +   V++L++      PN  HL MV E +    
Sbjct: 67  RPAPGGCIQPRGPIEQVYQEIAILKKLDHPNVVKLVEVLDD--PNEDHLYMVFELVNQG- 123
Query: 129 LRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
             +++    K L  ++ R   + ++ G++YLH +  IIH D+KP N+L+
Sbjct: 124 -PVMEVPTLKPLSEDQARFYFQDLIKGIEYLHYQ-KIIHRDIKPSNLLV 170

>pdb|3NIE|A Chain A, Crystal Structure Of Pf11_0147 Length = 429

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 88/248 (35%), Gaps = 75/248 (30%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRAN----------------------------KQFAEEI 274
           KP  CL   D   K+ DFG A   N                            KQ    +
Sbjct: 158 KPANCLLNQDCSVKICDFGLARTINSDKDIHIVNDLEEKEENEEPGPHNKNLKKQLTSHV 217
Query: 275 QTRQYRAPEVI-LRAGYSFSVDMWSFAC-----------------TAFELATGDMLF--A 314
            TR YRAPE+I L+  Y+ S+D+WS  C                   F L  G   F  +
Sbjct: 218 VTRWYRAPELILLQENYTNSIDIWSTGCIFAELLNMMKSHINNPTNRFPLFPGSSCFPLS 277
Query: 315 PKSGQGFCEDE---DHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLD 371
           P        ++   D L ++  +IG  P +                DLK I + +     
Sbjct: 278 PDHNSKKVHEKSNRDQLNIIFNVIGTPPEE----------------DLKCITKQEVIKYI 321
Query: 372 RLL-----VDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETK 426
           +L      +D  +   + ++E  + L  +L F  +KR T  + L HP+L      R E  
Sbjct: 322 KLFPTRDGIDLSKKYSSISKEGIDLLESMLRFNAQKRITIDKALSHPYLK---DVRKENL 378
Query: 427 NKSNVEKV 434
              + EK+
Sbjct: 379 ENFSTEKI 386

>pdb|2CMW|A Chain A, Structure Of Human Casein Kinase 1 Gamma-1 In Complex With 2-(2-Hydroxyethylamino)-6-(3-Chloroanilino)-9- Isopropylpurine (Casp Target) Length = 310

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 15/138 (10%)
Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHE--IEVLSAVADGDPSNEKC 99
           +K+G G F  + L  +  T+ YVA+K++   ++  Q  L     + L +  +G P     
Sbjct: 6   KKIGCGNFGELRLGKNLYTNEYVAIKLEPIKSRAPQLHLEYRFYKQLGSAGEGLPQ---- 61
Query: 100 VIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYL 159
               + +F   GP G++  MVLE LG SL  L      +   L  V  I   +L+ ++Y+
Sbjct: 62  ----VYYF---GPXGKYNAMVLELLGPSLEDLFDLCD-RTFTLKTVLMIAIQLLSRMEYV 113
Query: 160 HRELGIIHTDLKPENILL 177
           H +  +I+ D+KPEN L+
Sbjct: 114 HSK-NLIYRDVKPENFLI 130

>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme49_105860 Length = 467

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 69/155 (44%), Gaps = 32/155 (20%)
Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN 96
           RY   +KLG G +  V L  D  T +  A+KI K ++           V +    G   +
Sbjct: 5   RYQRVKKLGSGAYGEVLLCKDKLTGAERAIKIIKKSS-----------VTTTSNSGALLD 53
Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLEL-------NKVRE-- 147
           E  V++ +DH     PN   +  + EF  D     +    Y+G EL        K  E  
Sbjct: 54  EVAVLKQLDH-----PN---IMKLYEFFEDKRNYYLVMEVYRGGELFDEIILRQKFSEVD 105
Query: 148 ---ICKYILTGLDYLHRELGIIHTDLKPENILLVS 179
              I K +L+G  YLH+   I+H DLKPEN+LL S
Sbjct: 106 AAVIMKQVLSGTTYLHKH-NIVHRDLKPENLLLES 139

>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KPE  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 131 KPENLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 189
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 190 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 240
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 241 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 288

>pdb|3FPQ|A Chain A, Crystal Structure Of The Kinase Domain Of Wnk1 Length = 290

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 88/233 (37%), Gaps = 44/233 (18%)
Query: 34  NGGRYIA-QRKLGWGQFSIVWLAYDTRTSSYVA---LKIQKSAAQFAQAALHEIEVLSAV 89
           N GR++    ++G G F  V+   DT T+  VA   L+ +K      Q    E E L  +
Sbjct: 23  NDGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEXLKGL 82
Query: 90  ADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREIC 149
              +      ++R  D ++      + + +V E      L+     R+K  ++  +R  C
Sbjct: 83  QHPN------IVRFYDSWESTVKGKKCIVLVTELXTSGTLKTY-LKRFKVXKIKVLRSWC 135
Query: 150 KYILTGLDYLH-RELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGST 208
           + IL GL +LH R   IIH DLK +NI +                     P GS+  G  
Sbjct: 136 RQILKGLQFLHTRTPPIIHRDLKCDNIFITG-------------------PTGSVKIGDL 176
Query: 209 STMTIVEXXXXXXXXXXXXNISIRRASMGGIELPKPERCLDGIDMRCKVVDFG 261
              T+                S  +A +G  E   PE   +  D    V  FG
Sbjct: 177 GLATL-------------KRASFAKAVIGTPEFXAPEXYEEKYDESVDVYAFG 216

>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With Atp Length = 299

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KPE  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 131 KPENLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 189
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 190 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 240
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 241 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 288

>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KPE  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 132 KPENLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 190
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 191 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLG-TPDEVVWPGVTSMP--DYKP 241
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 242 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 289

>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KPE  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 133 KPENLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 191
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 192 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 242
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 243 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 290

>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence Of 3brb-Pp1 Length = 298

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 75/148 (50%), Gaps = 18/148 (12%)
Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI----QKSAAQFAQAALHEIEVLSAVADG 92
           RY  QR LG G F  V L  D  T    A+K+    Q       ++ L E+++L  +   
Sbjct: 33  RYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQL--- 89
Query: 93  DPSNEKCVIRLIDHFKHAGPNGQHLCMVLE-FLGDSLLRLIKYSRYKGLELNKVREICKY 151
           D  N   +++L + F+  G    +  +V E + G  L   I  SR +  E++  R I + 
Sbjct: 90  DHPN---IMKLYEFFEDKG----YFYLVGEVYTGGELFDEI-ISRKRFSEVDAAR-IIRQ 140
Query: 152 ILTGLDYLHRELGIIHTDLKPENILLVS 179
           +L+G+ Y+H+   I+H DLKPEN+LL S
Sbjct: 141 VLSGITYMHKN-KIVHRDLKPENLLLES 167

>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 299

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KPE  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 130 KPENLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 188
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 189 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 239
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 240 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 287

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 74/192 (38%), Gaps = 49/192 (25%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ-TRQYRAPEVILRAGYSFSVDMWSFAC 301
           KPE  L G     K+ DFG +C A       +  T  Y  PE+I    +   VD+WS   
Sbjct: 136 KPENLLLGSAGELKIADFGWSCHAPSSRRTTLSGTLDYLPPEMIEGRMHDEKVDLWSLGV 195
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 196 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 218
Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 421
           I R++F   D        F    AR   + +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 219 ISRVEFTFPD--------FVTEGAR---DLISRLLKHNPSQRPMLREVLEHPWITANSSK 267
Query: 422 RDETKNKSNVEK 433
              ++NK +  K
Sbjct: 268 PSNSQNKESASK 279

>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 309

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 14/151 (9%)
Query: 30  GDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVL 86
           G L +   +    K+G G + +V+ A +  T   VALK   +          A+ EI +L
Sbjct: 1   GPLVDMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLL 60
Query: 87  SAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVR 146
             +      N   +++L+D           L +V EFL   L + +  S   G+ L  ++
Sbjct: 61  KEL------NHPNIVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK 110
Query: 147 EICKYILTGLDYLHRELGIIHTDLKPENILL 177
                +L GL + H    ++H DLKP+N+L+
Sbjct: 111 SYLFQLLQGLAFCHSH-RVLHRDLKPQNLLI 140

>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 309

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 134 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIW 192
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 193 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLG-TPDEVVWPGVTSMP--DYKP 243
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 244 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 291

>pdb|3LM0|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B (STK17B) Length = 327

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 15/158 (9%)
Query: 33  FNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVA---LKIQKSAAQFAQAALHEIEVLSAV 89
           FN    +  ++LG G+F++V       T    A   LK ++         LHEI VL  +
Sbjct: 26  FNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLE-L 84
Query: 90  ADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREI 148
           A   P     VI L + ++    N   + ++LE+  G  +  L      + +  N V  +
Sbjct: 85  AKSCPR----VINLHEVYE----NTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRL 136
Query: 149 CKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKD 186
            K IL G+ YLH+   I+H DLKP+NILL S+I P  D
Sbjct: 137 IKQILEGVYYLHQN-NIVHLDLKPQNILL-SSIYPLGD 172

>pdb|3LM0|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B (STK17B) Length = 327

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 64/166 (38%), Gaps = 54/166 (32%)
Query: 256 KVVDFG------NACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATG 309
           K+VDFG      +AC    +  E + T +Y APE++     + + DMW+    A+ L T 
Sbjct: 174 KIVDFGMSRKIGHAC----ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTH 229
Query: 310 DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWS 369
              F  +  Q     E +L +                  + DY +            F S
Sbjct: 230 TSPFVGEDNQ-----ETYLNI---------------SQVNVDYSEE----------TFSS 259
Query: 370 LDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
           + +L  D              F+  LL   PEKRPTA+ CL H WL
Sbjct: 260 VSQLATD--------------FIQSLLVKNPEKRPTAEICLSHSWL 291

>pdb|2C47|A Chain A, Structure Of Casein Kinase 1 Gamma 2 Length = 313

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 16/145 (11%)
Query: 35  GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHE--IEVLSAVADG 92
           G  +   +K+G G F  + L  +  T+ YVA+K++   ++  Q  L     + LSA  +G
Sbjct: 3   GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPIKSRAPQLHLEYRFYKQLSA-TEG 61
Query: 93  DPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYI 152
            P              + GP G++  MVLE LG SL  L      +   L  V  I   +
Sbjct: 62  VP-----------QVYYFGPXGKYNAMVLELLGPSLEDLFDLCD-RTFTLKTVLMIAIQL 109
Query: 153 LTGLDYLHRELGIIHTDLKPENILL 177
           +T ++Y+H +  +I+ D+KPEN L+
Sbjct: 110 ITRMEYVHTK-SLIYRDVKPENFLV 133

>pdb|3SV0|A Chain A, Crystal Structure Of Casein Kinase-1 Like Protein In Plant Length = 483

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 17/150 (11%)
Query: 28  RVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLS 87
           RVG+ F  GR     K+G G F  ++L  + +T+  VA+K++    +  Q  L+E ++  
Sbjct: 4   RVGNKFRLGR-----KIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQ-LLYESKIYR 57
Query: 88  AVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVRE 147
            +  G           I + +  G  G +  +V++ LG SL  L  +   K L L  V  
Sbjct: 58  ILQGGTG---------IPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRK-LSLKTVLM 107
Query: 148 ICKYILTGLDYLHRELGIIHTDLKPENILL 177
           +   ++  ++++H +   +H D+KP+N L+
Sbjct: 108 LADQMINRVEFVHSK-SFLHRDIKPDNFLM 136

>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human Rsk-1 Bound To Amp-Pcp Length = 321

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 243 KPERCLDGIDMRCKVVDFG---NACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSF 299
           KPE  L   +   K+ DFG    A    K+      T +Y APEV+ R G+S S D WS+
Sbjct: 157 KPENILLDEEGHIKLTDFGLSKEAIDHEKKAYSFCGTVEYMAPEVVNRQGHSHSADWWSY 216
Query: 300 ACTAFELATGDMLFAPK 316
               FE+ TG + F  K
Sbjct: 217 GVLMFEMLTGSLPFQGK 233

>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine Length = 306

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVIL-RAGYSFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L    YS +VD+W
Sbjct: 137 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYTHEVVTLWYRAPEILLGXKYYSTAVDIW 195
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 196 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 246
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 247 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 294

>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From Toxoplasma Gondii, 541.m00134, Kinase Domain Length = 287

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 69/155 (44%), Gaps = 32/155 (20%)
Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN 96
           RY   +KLG G +  V L  D  T +  A+KI K ++           V +    G   +
Sbjct: 22  RYQRVKKLGSGAYGEVLLCKDKLTGAERAIKIIKKSS-----------VTTTSNSGALLD 70
Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLEL-------NKVRE-- 147
           E  V++ +DH     PN   +  + EF  D     +    Y+G EL        K  E  
Sbjct: 71  EVAVLKQLDH-----PN---IMKLYEFFEDKRNYYLVMEVYRGGELFDEIILRQKFSEVD 122
Query: 148 ---ICKYILTGLDYLHRELGIIHTDLKPENILLVS 179
              I K +L+G  YLH+   I+H DLKPEN+LL S
Sbjct: 123 AAVIMKQVLSGTTYLHKH-NIVHRDLKPENLLLES 156

>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine Length = 299

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVIL-RAGYSFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L    YS +VD+W
Sbjct: 130 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYTHEVVTLWYRAPEILLGXKYYSTAVDIW 188
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 189 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 239
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 240 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 287

>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site Length = 300

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 131 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIW 189
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 190 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 240
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 241 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 288

>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-Dependent Kinase Inhibitors Identified Through Structure-Based Hybridisation Length = 299

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 130 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIW 188
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 189 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 239
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 240 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 287

>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino Pyrimidine Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 129 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIW 187
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 188 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 238
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 239 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 286

>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 129 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIW 187
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 188 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 238
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 239 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 286

>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of 8-Anilino-1-Naphthalene Sulfonate Length = 306

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 137 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIW 195
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 196 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 246
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 247 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 294

>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine Length = 299

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 130 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIW 188
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 189 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 239
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 240 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 287

>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 296

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 129 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 187
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 188 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 238
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 239 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 286

>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed With A Bisanilinopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 133 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 191
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 192 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 242
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 243 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 290

>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-dependent Kinase Inhibitors Identified Through Structure-based Hybridisation Length = 299

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 130 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIW 188
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 189 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 239
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 240 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 287

>pdb|3E3P|A Chain A, Glycogen Synthase Kinase From Leishmania Major Length = 360

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 29/194 (14%)
Query: 235 SMGGIELPKPERC----------LDGIDMRCKVVDFGNACR--ANKQFAEEIQTRQYRAP 282
           S+G + LP    C          ++  D   K+ DFG+A +   ++     I +R YRAP
Sbjct: 141 SIGCLHLPSVNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEPNVAYICSRYYRAP 200
Query: 283 EVIL-RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 341
           E+I     Y+ +VD+WS  C   E+  G+ +F   +  G       L  ++ ++G   R+
Sbjct: 201 ELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAG------QLHEIVRVLGCPSRE 254
Query: 342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPE 401
           +      S    D +   K I     WS   +  D    S  DA+E  + L  LL + PE
Sbjct: 255 VLRKLNPSHTDVDLYNS-KGIP----WS--NVFSDH---SLKDAKEAYDLLSALLQYLPE 304
Query: 402 KRPTAQQCLQHPWL 415
           +R    + L HP+ 
Sbjct: 305 ERMKPYEALCHPYF 318

>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2 Complexed With A Nucleoside Inhibitor Length = 298

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 129 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIW 187
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 188 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLG-TPDEVVWPGVTSMP--DYKP 238
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 239 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 286

>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 298

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 131 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 189
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 190 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 240
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 241 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 288

>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide, Compound (S)-8b Length = 299

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 130 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIW 188
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 189 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 239
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 240 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 287

>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 298

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 129 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIW 187
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 188 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 238
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 239 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 286

>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 289

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 130 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 188
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 189 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 239
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 240 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 287

>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 133 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 191
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 192 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 242
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 243 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 290

>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED With The Inhibitor Nu2058 Length = 303

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 134 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 192
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 193 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 243
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 244 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 291

>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5 Length = 288

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 77/185 (41%), Gaps = 31/185 (16%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMW 297
           KP+  L   +   K+ DFG A RA     +++  EI T  YRAP+V++ +  YS ++D+W
Sbjct: 127 KPQNLLINREGELKIADFGLA-RAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIW 185
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY---FD 354
           S  C   E+  G  LF   S      + D L  +  ++G    K      +   Y   F 
Sbjct: 186 SVGCIFAEMVNGTPLFPGVS------EADQLMRIFRILGTPNSKNWPNVTELPKYDPNFT 239
Query: 355 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
            +  L     LK   LD   +D               L  +L   P +R TA+Q L+H +
Sbjct: 240 VYEPLPWESFLK--GLDESGID--------------LLSKMLKLDPNQRITAKQALEHAY 283
Query: 415 LSLRN 419
               N
Sbjct: 284 FKENN 288

>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v- H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor Length = 302

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 133 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 191
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 192 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLG-TPDEVVWPGVTSMP--DYKP 242
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 243 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 290

>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 298

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 130 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 188
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 189 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 239
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 240 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 287

>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With The Inhibitor Nu6102 Length = 300

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 132 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 190
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 191 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 241
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 242 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 289

>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With Atp Length = 302

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 133 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 191
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 192 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 242
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 243 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 290

>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 300

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 131 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 189
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 190 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 240
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 241 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 288

>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 298

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 129 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 187
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 188 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 238
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 239 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 286

>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 132 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 190
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 191 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 241
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 242 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 289

>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 297

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 130 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 188
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 189 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 239
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 240 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 287

>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 133 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 191
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 192 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 242
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 243 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 290

>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 301

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 132 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 190
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 191 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 241
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 242 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 289

>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182 Length = 353

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 86/202 (42%), Gaps = 38/202 (18%)
Query: 243 KPERCLDGIDMRCKVVDFG-----------NACRANKQ--FAEEIQTRQYRAPEVIL-RA 288
           KP   L   +   KV DFG           N+    +Q    E + TR YRAPEV+L  A
Sbjct: 139 KPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMTEXVATRWYRAPEVMLTSA 198
Query: 289 GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI----AI 344
            YS ++D+WS  C   EL     +F    G+ +      L L+  +IG  P        I
Sbjct: 199 KYSRAMDVWSCGCILAELFLRRPIFP---GRDY---RHQLLLIFGIIG-TPHSDNDLRCI 251
Query: 345 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP 404
              ++++Y         I+ L  +    L   +  F   + +   + L  +L F P KR 
Sbjct: 252 ESPRAREY---------IKSLPMYPAAPL---EKMFPRVNPKGI-DLLQRMLVFDPAKRI 298
Query: 405 TAQQCLQHPWLSLRNSTRDETK 426
           TA++ L+HP+L   +   DE +
Sbjct: 299 TAKEALEHPYLQTYHDPNDEPE 320

>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 299

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 297
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 130 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 188
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 189 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 239
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 240 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 287

>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2 Length = 484

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 18/148 (12%)
Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI----QKSAAQFAQAALHEIEVLSAVADG 92
           RY  QR LG G F  V L  D  T    A+K+    Q       ++ L E+++L  +   
Sbjct: 27  RYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQL--- 83
Query: 93  DPSNEKCVIRLIDHFKHAGPNGQHLCMVLE-FLGDSLLRLIKYSRYKGLELNKVREICKY 151
           D  N   + +L + F+  G    +  +V E + G  L   I  SR +  E++  R I + 
Sbjct: 84  DHPN---IXKLYEFFEDKG----YFYLVGEVYTGGELFDEI-ISRKRFSEVDAAR-IIRQ 134
Query: 152 ILTGLDYLHRELGIIHTDLKPENILLVS 179
           +L+G+ Y H+   I+H DLKPEN+LL S
Sbjct: 135 VLSGITYXHKN-KIVHRDLKPENLLLES 161

>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3 Length = 353

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 86/202 (42%), Gaps = 38/202 (18%)
Query: 243 KPERCLDGIDMRCKVVDFG-----------NACRANKQ--FAEEIQTRQYRAPEVIL-RA 288
           KP   L   +   KV DFG           N+    +Q    E + TR YRAPEV+L  A
Sbjct: 139 KPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMTEYVATRWYRAPEVMLTSA 198
Query: 289 GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI----AI 344
            YS ++D+WS  C   EL     +F    G+ +      L L+  +IG  P        I
Sbjct: 199 KYSRAMDVWSCGCILAELFLRRPIFP---GRDY---RHQLLLIFGIIGT-PHSDNDLRCI 251
Query: 345 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP 404
              ++++Y         I+ L  +    L   +  F   + +   + L  +L F P KR 
Sbjct: 252 ESPRAREY---------IKSLPMYPAAPL---EKMFPRVNPKGI-DLLQRMLVFDPAKRI 298
Query: 405 TAQQCLQHPWLSLRNSTRDETK 426
           TA++ L+HP+L   +   DE +
Sbjct: 299 TAKEALEHPYLQTYHDPNDEPE 320

>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate Ligand Complex Length = 288

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 77/185 (41%), Gaps = 31/185 (16%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMW 297
           KP+  L   +   K+ DFG A RA     +++  E+ T  YRAP+V++ +  YS ++D+W
Sbjct: 127 KPQNLLINREGELKIADFGLA-RAFGIPVRKYTHEVVTLWYRAPDVLMGSKKYSTTIDIW 185
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY---FD 354
           S  C   E+  G  LF   S      + D L  +  ++G    K      +   Y   F 
Sbjct: 186 SVGCIFAEMVNGTPLFPGVS------EADQLMRIFRILGTPNSKNWPNVTELPKYDPNFT 239
Query: 355 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
            +  L     LK   LD   +D               L  +L   P +R TA+Q L+H +
Sbjct: 240 VYEPLPWESFLK--GLDESGID--------------LLSKMLKLDPNQRITAKQALEHAY 283
Query: 415 LSLRN 419
               N
Sbjct: 284 FKENN 288

>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And Nck-Interacting Kinase With Wee1chk1 Inhibitor Length = 326

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 9/142 (6%)
Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRL 103
           +G G +  V+     +T    A+K+        +    EI +L        S+ + +   
Sbjct: 32  VGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKY-----SHHRNIATY 86
Query: 104 IDHFKHAGPNG--QHLCMVLEFLG-DSLLRLIKYSRYKGLELNKVREICKYILTGLDYLH 160
              F    P G    L +V+EF G  S+  LIK ++   L+   +  IC+ IL GL +LH
Sbjct: 87  YGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLH 146
Query: 161 RELGIIHTDLKPENILLVSTID 182
           +   +IH D+K +N+LL    +
Sbjct: 147 QH-KVIHRDIKGQNVLLTENAE 167

>pdb|4HNI|A Chain A, Crystal Structure Of Ck1e In Complex With Pf4800567 Length = 296

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 12/143 (8%)
Query: 35  GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDP 94
           G +Y   RK+G G F  ++L  +  +   VA+K++    +  Q  LH       +  G  
Sbjct: 8   GNKYRLGRKIGSGSFGDIYLGANIASGEEVAIKLECVKTKHPQ--LHIESKFYKMMQGGV 65
Query: 95  SNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILT 154
                    I   K  G  G +  MV+E LG SL  L  +   K   L  V  +   +++
Sbjct: 66  G--------IPSIKWCGAEGDYNVMVMELLGPSLEDLFNFCSRK-FSLKTVLLLADQMIS 116
Query: 155 GLDYLHRELGIIHTDLKPENILL 177
            ++Y+H +   IH D+KP+N L+
Sbjct: 117 RIEYIHSK-NFIHRDVKPDNFLM 138

>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor Length = 398

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 29/192 (15%)
Query: 243 KPERCLDGIDMRCKVVDFGNA-----CRANKQF--AEEIQTRQYRAPEVILRAG-YSFSV 294
           KP   L   +   K+ DFG A       A  Q+   E + TR YRAPE++L    Y+ ++
Sbjct: 185 KPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAI 244
Query: 295 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDY 352
           D+WS  C   E+     LF    G+ +      L L+M ++G     +  A+G  + + Y
Sbjct: 245 DLWSVGCIFGEMLARRQLF---PGKNYVH---QLQLIMMVLGTPSPAVIQAVGAERVRAY 298
Query: 353 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 412
                     R+   W       D+   S          L  +L F P  R +A   L+H
Sbjct: 299 IQSLPP----RQPVPWETVYPGADRQALS---------LLGRMLRFEPSARISAAAALRH 345
Query: 413 PWLSLRNSTRDE 424
           P+L+  +   DE
Sbjct: 346 PFLAKYHDPDDE 357

>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5 Length = 288

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 77/185 (41%), Gaps = 31/185 (16%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMW 297
           KP+  L   +   K+ DFG A RA     +++  E+ T  YRAP+V++ +  YS ++D+W
Sbjct: 127 KPQNLLINREGELKIADFGLA-RAFGIPVRKYTHEVVTLWYRAPDVLMGSKKYSTTIDIW 185
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY---FD 354
           S  C   E+  G  LF   S      + D L  +  ++G    K      +   Y   F 
Sbjct: 186 SVGCIFAEMVNGAPLFPGVS------EADQLMRIFRILGTPNSKNWPNVTELPKYDPNFT 239
Query: 355 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
            +  L     LK   LD   +D               L  +L   P +R TA+Q L+H +
Sbjct: 240 VYEPLPWESFLK--GLDESGID--------------LLSKMLKLDPNQRITAKQALEHAY 283
Query: 415 LSLRN 419
               N
Sbjct: 284 FKENN 288

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 97/243 (39%), Gaps = 42/243 (17%)
Query: 41  QRKLGWGQFSIVWLA-YDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKC 99
           ++KLG GQF  VW+A Y+  T   VA+K  K  +   +A L E  V+  +          
Sbjct: 20  EKKLGAGQFGEVWMATYNKHTK--VAVKTMKPGSMSVEAFLAEANVMKTLQHDK------ 71
Query: 100 VIRLIDHFKHAGPNGQHLCMVLEFLGD-SLLRLIKYSRYKGLELNKVREICKYILTGLDY 158
           +++L     HA    + + ++ EF+   SLL  +K        L K+ +    I  G+ +
Sbjct: 72  LVKL-----HAVVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAF 126
Query: 159 LHRELGIIHTDLKPENIL-------------LVSTIDPSKDPIRSGLT-PILERPEGSIN 204
           + +    IH DL+  NIL             L   I+ ++   R G   PI      +IN
Sbjct: 127 IEQR-NYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAIN 185
Query: 205 GGSTSTMTIVEXXXXXXXXXXX---------XNISIRRASMGGIELPKPERC---LDGID 252
            GS +  + V                      N  + RA   G  +P+PE C   L  I 
Sbjct: 186 FGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPRPENCPEELYNIM 245
Query: 253 MRC 255
           MRC
Sbjct: 246 MRC 248

>pdb|3GBZ|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia Length = 329

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 76/166 (45%), Gaps = 24/166 (14%)
Query: 256 KVVDFGNACRAN----KQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGD 310
           K+ DFG A RA     +QF  EI T  YR PE++L +  YS SVD+WS AC   E+    
Sbjct: 177 KIGDFGLA-RAFGIPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKT 235
Query: 311 MLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSL 370
            LF   S      + D L  + E++G +P      G  +   + +     R + LK    
Sbjct: 236 PLFPGDS------EIDQLFKIFEVLG-LPDDTTWPGVTALPDWKQSFPKFRGKTLK---- 284
Query: 371 DRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
            R+L            E  + L  +L+  P KR +A+  L+HP+ S
Sbjct: 285 -RVL------GALLDDEGLDLLTAMLEMDPVKRISAKNALEHPYFS 323

>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With Y- 27632 Length = 350

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       KV DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIKVADFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain Length = 331

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 23/180 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNA---CRANKQFAEEIQTRQYRAPEVIL-RAGYSFSVDMWS 298
           KPE  L       K+ DFG A       + + +E+ TR YRAPE+++    Y  +VD+W+
Sbjct: 151 KPENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATRWYRAPELLVGDVKYGKAVDVWA 210
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKM-PRKIAIGGAQSKDYFDRHG 357
             C   E+  G+ LF   S      D D L  +M  +G + PR         ++ F+++ 
Sbjct: 211 IGCLVTEMFMGEPLFPGDS------DIDQLYHIMMCLGNLIPR--------HQELFNKNP 256
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 417
               +R  +    + L     + SE       +     L   P+KRP   + L H +  +
Sbjct: 257 VFAGVRLPEIKEREPLERRYPKLSEV----VIDLAKKCLHIDPDKRPFCAELLHHDFFQM 312

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 97/243 (39%), Gaps = 42/243 (17%)
Query: 41  QRKLGWGQFSIVWLA-YDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKC 99
           ++KLG GQF  VW+A Y+  T   VA+K  K  +   +A L E  V+  +          
Sbjct: 193 EKKLGAGQFGEVWMATYNKHTK--VAVKTMKPGSMSVEAFLAEANVMKTL------QHDK 244
Query: 100 VIRLIDHFKHAGPNGQHLCMVLEFLGD-SLLRLIKYSRYKGLELNKVREICKYILTGLDY 158
           +++L     HA    + + ++ EF+   SLL  +K        L K+ +    I  G+ +
Sbjct: 245 LVKL-----HAVVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAF 299
Query: 159 LHRELGIIHTDLKPENIL-------------LVSTIDPSKDPIRSGLT-PILERPEGSIN 204
           + +    IH DL+  NIL             L   I+ ++   R G   PI      +IN
Sbjct: 300 IEQR-NYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAIN 358
Query: 205 GGSTSTMTIVEXXXXXXXXXXX---------XNISIRRASMGGIELPKPERC---LDGID 252
            GS +  + V                      N  + RA   G  +P+PE C   L  I 
Sbjct: 359 FGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPRPENCPEELYNIM 418
Query: 253 MRC 255
           MRC
Sbjct: 419 MRC 421

>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase Length = 350

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       KV DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIKVADFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632 Length = 350

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       KV DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIKVADFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase, Kinase: An Active Protein Kinase Complexed With Nucleotide, Substrate-Analogue And Product Length = 298

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 66/181 (36%), Gaps = 52/181 (28%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVIL------RAGYSFSV 294
           KPE  L   DM  K+ DFG +C+ +  ++  E   T  Y APE+I         GY   V
Sbjct: 151 KPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEV 210
Query: 295 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 354
           DMWS     + L  G   F  +             LM+ +I  M      G  +  DY D
Sbjct: 211 DMWSTGVIMYTLLAGSPPFWHRKQM----------LMLRMI--MSGNYQFGSPEWDDYSD 258
Query: 355 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
              DL          + R LV                        P+KR TA++ L HP+
Sbjct: 259 TVKDL----------VSRFLV----------------------VQPQKRYTAEEALAHPF 286
Query: 415 L 415
Sbjct: 287 F 287

>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex With An Mkk5 Binding Fragment Length = 442

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 29/192 (15%)
Query: 243 KPERCLDGIDMRCKVVDFGNA-----CRANKQF--AEEIQTRQYRAPEVILRAG-YSFSV 294
           KP   L   +   K+ DFG A       A  Q+   E + TR YRAPE++L    Y+ ++
Sbjct: 186 KPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAI 245
Query: 295 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDY 352
           D+WS  C   E+     LF    G+ +      L L+M ++G     +  A+G  + + Y
Sbjct: 246 DLWSVGCIFGEMLARRQLF---PGKNYVH---QLQLIMMVLGTPSPAVIQAVGAERVRAY 299
Query: 353 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 412
                     R+   W       D+   S          L  +L F P  R +A   L+H
Sbjct: 300 IQSLPP----RQPVPWETVYPGADRQALS---------LLGRMLRFEPSARISAAAALRH 346
Query: 413 PWLSLRNSTRDE 424
           P+L+  +   DE
Sbjct: 347 PFLAKYHDPDDE 358

>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7 Length = 353

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 86/202 (42%), Gaps = 38/202 (18%)
Query: 243 KPERCLDGIDMRCKVVDFG-----------NACRANKQ--FAEEIQTRQYRAPEVIL-RA 288
           KP   L   +   KV DFG           N+    +Q    E + TR YRAPEV+L  A
Sbjct: 139 KPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSA 198
Query: 289 GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI----AI 344
            YS ++D+WS  C   EL     +F    G+ +      L L+  +IG  P        I
Sbjct: 199 KYSRAMDVWSCGCILAELFLRRPIFP---GRDY---RHQLLLIFGIIGT-PHSDNDLRCI 251
Query: 345 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP 404
              ++++Y         I+ L  +    L   +  F   + +   + L  +L F P KR 
Sbjct: 252 ESPRAREY---------IKSLPMYPAAPL---EKMFPRVNPKGI-DLLQRMLVFDPAKRI 298
Query: 405 TAQQCLQHPWLSLRNSTRDETK 426
           TA++ L+HP+L   +   DE +
Sbjct: 299 TAKEALEHPYLQTYHDPNDEPE 320

>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With Inhibitor Jnj- 7706621 Length = 351

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       KV DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 169 KPENLLIDQQGYIKVADFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 228
Query: 303 AFELATG 309
            +E+A G
Sbjct: 229 IYEMAAG 235

>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase Mst4 In Complex With An Quinazolin Length = 301

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 17/139 (12%)
Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKI--QKSAAQFAQAALHEIEVLSAVADGDPSNEKC 99
            ++G G F  V+   D RT   VA+KI   + A    +    EI VLS          +C
Sbjct: 29  ERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLS----------QC 78
Query: 100 VIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDY 158
               +  +  +   G  L +++E+L G S L L++   +   +   +  + K IL GLDY
Sbjct: 79  DSSYVTKYYGSYLKGSKLWIIMEYLGGGSALDLLRAGPFDEFQ---IATMLKEILKGLDY 135
Query: 159 LHRELGIIHTDLKPENILL 177
           LH E   IH D+K  N+LL
Sbjct: 136 LHSEKK-IHRDIKAANVLL 153

>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide Substrate Complex: Kinase Substrate Recognition Length = 277

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 66/181 (36%), Gaps = 52/181 (28%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVIL------RAGYSFSV 294
           KPE  L   DM  K+ DFG +C+ +  ++  E   T  Y APE+I         GY   V
Sbjct: 138 KPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEV 197
Query: 295 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 354
           DMWS     + L  G   F  +             LM+ +I  M      G  +  DY D
Sbjct: 198 DMWSTGVIMYTLLAGSPPFWHRKQM----------LMLRMI--MSGNYQFGSPEWDDYSD 245
Query: 355 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
              DL          + R LV                        P+KR TA++ L HP+
Sbjct: 246 TVKDL----------VSRFLV----------------------VQPQKRYTAEEALAHPF 273
Query: 415 L 415
Sbjct: 274 F 274

>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1, Cgd3_920 Length = 486

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 83/204 (40%), Gaps = 53/204 (25%)
Query: 243 KPERCL---DGIDMRCKVVDFG-NAC-RANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 297
           KPE  L      D   K++DFG + C + N +  + I T  Y APEV LR  Y    D+W
Sbjct: 148 KPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEV-LRGTYDEKCDVW 206
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S     + L +G   F  K                                     + + 
Sbjct: 207 SAGVILYILLSGTPPFYGK-------------------------------------NEYD 229
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 417
            LKR+   K ++ D   + ++R    DA++    +  +L F P  R TA QCL+HPW+  
Sbjct: 230 ILKRVETGK-YAFD---LPQWRTISDDAKDL---IRKMLTFHPSLRITATQCLEHPWIQK 282
Query: 418 RNSTRDETKNKSNVEKVDVGMSKL 441
            +S   ET   S++  ++  M+ +
Sbjct: 283 YSS---ETPTISDLPSLESAMTNI 303

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 69/154 (44%), Gaps = 33/154 (21%)
Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNE 97
           Y   +KLG G +  V L  D  T    A+KI +  +            +S  ++     E
Sbjct: 39  YQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTS------------VSTSSNSKLLEE 86
Query: 98  KCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLEL----------NKVRE 147
             V++L+DH     PN   +  + +F  D     +    YKG EL          N+V  
Sbjct: 87  VAVLKLLDH-----PN---IMKLYDFFEDKRNYYLVMECYKGGELFDEIIHRMKFNEVDA 138
Query: 148 --ICKYILTGLDYLHRELGIIHTDLKPENILLVS 179
             I K +L+G+ YLH+   I+H DLKPEN+LL S
Sbjct: 139 AVIIKQVLSGVTYLHKH-NIVHRDLKPENLLLES 171

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 70/182 (38%), Gaps = 58/182 (31%)
Query: 243 KPERCL---DGIDMRCKVVDFG-NACRAN-KQFAEEIQTRQYRAPEVILRAGYSFSVDMW 297
           KPE  L      D   K+VDFG +A   N K+  E + T  Y APEV LR  Y    D+W
Sbjct: 163 KPENLLLESKEKDALIKIVDFGLSAVFENQKKMKERLGTAYYIAPEV-LRKKYDEKCDVW 221
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S     F L  G   + P  GQ    D++ L           RK+  G            
Sbjct: 222 SIGVILFILLAG---YPPFGGQT---DQEIL-----------RKVEKG------------ 252
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAE----FLVPLLDFTPEKRPTAQQCLQHP 413
                              KY F   + +  +E     +  +L F  ++R +AQQ L+HP
Sbjct: 253 -------------------KYTFDSPEWKNVSEGAKDLIKQMLQFDSQRRISAQQALEHP 293
Query: 414 WL 415
           W+
Sbjct: 294 WI 295

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 243 KPERCLDGIDMRCKVVDFG---NACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSF 299
           KPE  L   +   K+ DFG    +    K+      T +Y APEV+ R G++ S D WSF
Sbjct: 153 KPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSF 212
Query: 300 ACTAFELATGDMLFAPK 316
               FE+ TG + F  K
Sbjct: 213 GVLMFEMLTGTLPFQGK 229

>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein Kinase A (Pka) Length = 350

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  +       KV DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLMIDQQGYIKVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a, L173m, Q181k) With Compound 18 Length = 351

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  +       KV DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 169 KPENLMIDQQGYIKVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 228
Query: 303 AFELATG 309
            +E+A G
Sbjct: 229 IYEMAAG 235

>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb Length = 350

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  +       KV DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLMIDQQGYIKVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 351

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  +       KV DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 169 KPENLMIDQQGYIKVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 228
Query: 303 AFELATG 309
            +E+A G
Sbjct: 229 IYEMAAG 235

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 243 KPERCLDGIDMRCKVVDFG---NACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSF 299
           KPE  L   +   K+ DFG    +    K+      T +Y APEV+ R G++ S D WSF
Sbjct: 154 KPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSF 213
Query: 300 ACTAFELATGDMLFAPK 316
               FE+ TG + F  K
Sbjct: 214 GVLMFEMLTGTLPFQGK 230

>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4- Chlorophenyl)-1-(7h-Pyrrolo(2, 3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine Length = 351

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  +       KV DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 169 KPENLMIDQQGYIKVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 228
Query: 303 AFELATG 309
            +E+A G
Sbjct: 229 IYEMAAG 235

>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h- Purin-6-yl)-benzyl)-amine Length = 351

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  +       KV DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 169 KPENLMIDQQGYIKVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 228
Query: 303 AFELATG 309
            +E+A G
Sbjct: 229 IYEMAAG 235

>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase I G Length = 304

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 17/151 (11%)
Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAAL-HEIEVLSAVADGDPSN 96
           +I    LG G FS V+L     T    ALK  K +  F  ++L +EI VL  +   +   
Sbjct: 11  FIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHEN--- 67
Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILT 154
              ++ L D ++    +  H  +V++ +  G+   R+++   Y   + + V    + +L+
Sbjct: 68  ---IVTLEDIYE----STTHYYLVMQLVSGGELFDRILERGVYTEKDASLV---IQQVLS 117
Query: 155 GLDYLHRELGIIHTDLKPENILLVSTIDPSK 185
            + YLH E GI+H DLKPEN+L ++  + SK
Sbjct: 118 AVKYLH-ENGIVHRDLKPENLLYLTPEENSK 147

>pdb|1J3H|A Chain A, Crystal Structure Of Apoenzyme Camp-Dependent Protein Kinase Catalytic Subunit Length = 350

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLXGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  +       KV DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLMIDQQGYIKVTDFGLAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 73/192 (38%), Gaps = 49/192 (25%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEI-QTRQYRAPEVILRAGYSFSVDMWSFAC 301
           KPE  L G     K+ DFG +  A      E+  T  Y  PE+I    +   VD+WS   
Sbjct: 135 KPENLLLGSAGELKIADFGWSVHAPSSRRTELCGTLDYLPPEMIEGRMHDEKVDLWSLGV 194
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 195 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 217
Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 421
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 218 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSSK 266
Query: 422 RDETKNKSNVEK 433
               +NK +  K
Sbjct: 267 PSNCQNKESASK 278

>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And Regulatory (Ri{alpha}) Subunits Of Pka Length = 350

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLAGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor Complex Length = 371

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 189 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 248
Query: 303 AFELATG 309
            +E+A G
Sbjct: 249 IYEMAAG 255

>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent Protein Kinase With Unphosphorylated Turn Motif Length = 371

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 189 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 248
Query: 303 AFELATG 309
            +E+A G
Sbjct: 249 IYEMAAG 255

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 243 KPERCLDGIDMRCKVVDFG---NACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSF 299
           KPE  L   +   K+ DFG    +    K+      T +Y APEV+ R G++ S D WSF
Sbjct: 153 KPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSF 212
Query: 300 ACTAFELATGDMLFAPK 316
               FE+ TG + F  K
Sbjct: 213 GVLMFEMLTGTLPFQGK 229

>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors Length = 336

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 154 KPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVL 213
Query: 303 AFELATG 309
            +E+A G
Sbjct: 214 IYEMAAG 220

>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-1039 Length = 351

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 169 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 228
Query: 303 AFELATG 309
            +E+A G
Sbjct: 229 IYEMAAG 235

>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-670 Length = 351

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 169 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 228
Query: 303 AFELATG 309
            +E+A G
Sbjct: 229 IYEMAAG 235

>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With Azepane Derivative 8 Length = 350

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077) Length = 350

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit Calpha 2 Length = 343

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 161 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 220
Query: 303 AFELATG 309
            +E+A G
Sbjct: 221 IYEMAAG 227

>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With Pki-5-24 Length = 350

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With Staurosporine Length = 350

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of Camp-Dependent Protein Kinase And An Inhibitor Peptide Displays An Open Conformation Length = 350

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit (E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24) Isoelectric Variant Ca) And Mn2+ Adenylyl Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c Length = 350

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With A- 443654 Length = 351

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 169 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 228
Query: 303 AFELATG 309
            +E+A G
Sbjct: 229 IYEMAAG 235

>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl)amide Length = 351

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 169 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 228
Query: 303 AFELATG 309
            +E+A G
Sbjct: 229 IYEMAAG 235

>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol Length = 351

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 169 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 228
Query: 303 AFELATG 309
            +E+A G
Sbjct: 229 IYEMAAG 235

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 93/233 (39%), Gaps = 32/233 (13%)
Query: 41  QRKLGWGQFSIVWLA-YDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKC 99
           ++KLG GQF  VW+A Y+  T   VA+K  K  +   +A L E  V+  +          
Sbjct: 187 EKKLGAGQFGEVWMATYNKHTK--VAVKTMKPGSMSVEAFLAEANVMKTL------QHDK 238
Query: 100 VIRLIDHFKHAGPNGQHLCMVLEFLGD-SLLRLIKYSRYKGLELNKVREICKYILTGLDY 158
           +++L     HA    + + ++ EF+   SLL  +K        L K+ +    I  G+ +
Sbjct: 239 LVKL-----HAVVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAF 293
Query: 159 LHRELGIIHTDLKPENIL----LVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIV 214
           + +    IH DL+  NIL    LV  I            PI      +IN GS +  + V
Sbjct: 294 IEQR-NYIHRDLRAANILVSASLVCKIADFGLARVGAKFPIKWTAPEAINFGSFTIKSDV 352
Query: 215 EXXXXXXXXXXX---------XNISIRRASMGGIELPKPERC---LDGIDMRC 255
                                 N  + RA   G  +P+PE C   L  I MRC
Sbjct: 353 WSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPRPENCPEELYNIMMRC 405

>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit Of Camp- Dependent Protein Kinase Reveal Open And Closed Conformations Length = 350

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of Camp-Dependent Protein Kinase Length = 345

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 163 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 222
Query: 303 AFELATG 309
            +E+A G
Sbjct: 223 IYEMAAG 229

>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2 Length = 343

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 161 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 220
Query: 303 AFELATG 309
            +E+A G
Sbjct: 221 IYEMAAG 227

>pdb|2QUR|A Chain A, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|2F7E|E Chain E, Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6- Yl-Pyridin-3-Yloxymethyl-Etylamine Length = 351

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 169 KPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVL 228
Query: 303 AFELATG 309
            +E+A G
Sbjct: 229 IYEMAAG 235

>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp- Dependent Protein Kinase Complexed With A Substrate Peptide, Adp And Detergent Length = 350

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex Length = 292

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 75/179 (41%), Gaps = 24/179 (13%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMW 297
           KP+  L   +   K+ DFG A RA     + ++ E+ T  YR P+V+  A  YS S+DMW
Sbjct: 128 KPQNLLINRNGELKLADFGLA-RAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMW 186
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   ELA       P +     + +D L  +  L+G    +      +  DY     
Sbjct: 187 SAGCIFAELANAARPLFPGN-----DVDDQLKRIFRLLGTPTEEQWPSMTKLPDY----- 236
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
                +    +     LV+         R   + L  LL   P +R +A++ LQHP+ S
Sbjct: 237 -----KPYPMYPATTSLVNVVPKLNATGR---DLLQNLLKCNPVQRISAEEALQHPYFS 287

>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory Subunit Of Protein Kinase A That Represents The Inhibited State Length = 350

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of Camp-Dependent Protein Kinase And Adenosine Further Defines Conformational Flexibility Length = 350

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With H89 Protein Kinase Inhibitor N-[2- (4-Bromocinnamylamino)ethyl]-5-Isoquinoline Length = 350

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|3QAL|E Chain E, Crystal Structure Of Arg280ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To Hydroxyfasudil Length = 351

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 169 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 228
Query: 303 AFELATG 309
            +E+A G
Sbjct: 229 IYEMAAG 235

>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With The Peptide Inhibitor Pki(5-24) And Adenosine Length = 350

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With A Peptide Inhibitor And Detergent Length = 350

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 74/192 (38%), Gaps = 49/192 (25%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA-NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFAC 301
           KPE  L G     K+ DFG +  A + + A    T  Y  PE+I    +   VD+WS   
Sbjct: 138 KPENLLLGSAGELKIADFGWSVHAPSSRRAALCGTLDYLPPEMIEGRMHDEKVDLWSLGV 197
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 198 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 220
Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 421
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 221 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSSK 269
Query: 422 RDETKNKSNVEK 433
               +NK +  K
Sbjct: 270 PSNCQNKESASK 281

>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And Potent Inhibitors For Akt: Synthesis And Sar Studies Length = 337

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 155 KPENLLIDEQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 214
Query: 303 AFELATG 309
            +E+A G
Sbjct: 215 IYEMAAG 221

>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase ( Diphosphorylated Form) Bound To 5- Amino-3-((4-( Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 12/137 (8%)
Query: 43  KLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVI 101
           +LG G F  V+ A +  TS   A K I   + +  +  + EI++L++       +   ++
Sbjct: 44  ELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASC------DHPNIV 97
Query: 102 RLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR 161
           +L+D F +      +L +++EF     +  +     + L  ++++ +CK  L  L+YLH 
Sbjct: 98  KLLDAFYYEN----NLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHD 153
Query: 162 ELGIIHTDLKPENILLV 178
              IIH DLK  NIL  
Sbjct: 154 N-KIIHRDLKAGNILFT 169

>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded Form) Length = 325

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 12/137 (8%)
Query: 43  KLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVI 101
           +LG G F  V+ A +  TS   A K I   + +  +  + EI++L++       +   ++
Sbjct: 44  ELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASC------DHPNIV 97
Query: 102 RLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR 161
           +L+D F +      +L +++EF     +  +     + L  ++++ +CK  L  L+YLH 
Sbjct: 98  KLLDAFYYEN----NLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHD 153
Query: 162 ELGIIHTDLKPENILLV 178
              IIH DLK  NIL  
Sbjct: 154 N-KIIHRDLKAGNILFT 169

>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5- Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 12/137 (8%)
Query: 43  KLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVI 101
           +LG G F  V+ A +  TS   A K I   + +  +  + EI++L++    D  N   ++
Sbjct: 44  ELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASC---DHPN---IV 97
Query: 102 RLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR 161
           +L+D F +      +L +++EF     +  +     + L  ++++ +CK  L  L+YLH 
Sbjct: 98  KLLDAFYYEN----NLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHD 153
Query: 162 ELGIIHTDLKPENILLV 178
              IIH DLK  NIL  
Sbjct: 154 N-KIIHRDLKAGNILFT 169

>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit Of Camp- Dependent Protein Kinase In Complex With Sp20 And Amp-Pnp Length = 350

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent Protein Kinase With Unphosphorylated Activation Loop Length = 371

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 33/67 (49%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R          T +Y APE+IL  GY+ +VD W+    
Sbjct: 189 KPENLLIDQQGYIQVTDFGFAKRVKGATWTLCGTPEYLAPEIILSKGYNKAVDWWALGVL 248
Query: 303 AFELATG 309
            +E+A G
Sbjct: 249 IYEMAAG 255

>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium Parvum Calcium Dependent Protein Kinase In Complex With 3- Mb-Pp1 Length = 287

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 73/183 (39%), Gaps = 50/183 (27%)
Query: 243 KPERCL---DGIDMRCKVVDFG-NAC-RANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 297
           KPE  L      D   K++DFG + C + N +  + I T  Y APEV LR  Y    D+W
Sbjct: 148 KPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEV-LRGTYDEKCDVW 206
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S     + L +G   F  K                                     + + 
Sbjct: 207 SAGVILYILLSGTPPFYGK-------------------------------------NEYD 229
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 417
            LKR+   K+ + D   + ++R    DA+   + +  +L F P  R TA QCL+HPW+  
Sbjct: 230 ILKRVETGKY-AFD---LPQWRTISDDAK---DLIRKMLTFHPSLRITATQCLEHPWIQK 282
Query: 418 RNS 420
            +S
Sbjct: 283 YSS 285

>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent Protein Kinase Cgd3_920 From Cryptosporidium Parvum Length = 286

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 73/183 (39%), Gaps = 50/183 (27%)
Query: 243 KPERCL---DGIDMRCKVVDFG-NAC-RANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 297
           KPE  L      D   K++DFG + C + N +  + I T  Y APEV LR  Y    D+W
Sbjct: 148 KPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEV-LRGTYDEKCDVW 206
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S     + L +G   F  K                                     + + 
Sbjct: 207 SAGVILYILLSGTPPFYGK-------------------------------------NEYD 229
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 417
            LKR+   K+ + D   + ++R    DA+   + +  +L F P  R TA QCL+HPW+  
Sbjct: 230 ILKRVETGKY-AFD---LPQWRTISDDAK---DLIRKMLTFHPSLRITATQCLEHPWIQK 282
Query: 418 RNS 420
            +S
Sbjct: 283 YSS 285

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 62/164 (37%), Gaps = 48/164 (29%)
Query: 255 CKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDM 311
            K+ DFG A +     A+    I T  + APEVI   GY+   D+WS   TA E+A G  
Sbjct: 164 AKLADFGVAGQLTDXMAKRNXVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKP 223
Query: 312 LFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLD 371
            +A          + H    + +I   P                       R+ + WS  
Sbjct: 224 PYA----------DIHPMRAIFMIPTNPPPT-------------------FRKPELWS-- 252
Query: 372 RLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
                           F +F+   L  +PE+R TA Q LQHP++
Sbjct: 253 --------------DNFTDFVKQCLVKSPEQRATATQLLQHPFV 282

>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment Length = 336

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 9/142 (6%)
Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPS 95
           G YI +  LG G F  V LA   +T   VALK    + Q  + +   + V   ++     
Sbjct: 9   GPYIIRETLGEGSFGKVKLATHYKTQQKVALKF--ISRQLLKKSDMHMRVEREISYLKLL 66
Query: 96  NEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTG 155
               +I+L D           + MV+E+ G  L   I     K +  ++ R   + I+  
Sbjct: 67  RHPHIIKLYDVIT----TPTDIVMVIEYAGGELFDYI--VEKKRMTEDEGRRFFQQIICA 120
Query: 156 LDYLHRELGIIHTDLKPENILL 177
           ++Y HR   I+H DLKPEN+LL
Sbjct: 121 IEYCHRH-KIVHRDLKPENLLL 141

>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp Length = 350

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  +       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLMIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By Mutational Studies Length = 298

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 65/181 (35%), Gaps = 52/181 (28%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVIL------RAGYSFSV 294
           KPE  L   DM  K+ DFG +C+ +  ++      T  Y APE+I         GY   V
Sbjct: 151 KPENILLDDDMNIKLTDFGFSCQLDPGEKLRSVCGTPSYLAPEIIECSMNDNHPGYGKEV 210
Query: 295 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 354
           DMWS     + L  G   F  +             LM+ +I  M      G  +  DY D
Sbjct: 211 DMWSTGVIMYTLLAGSPPFWHRKQM----------LMLRMI--MSGNYQFGSPEWDDYSD 258
Query: 355 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
              DL          + R LV                        P+KR TA++ L HP+
Sbjct: 259 TVKDL----------VSRFLV----------------------VQPQKRYTAEEALAHPF 286
Query: 415 L 415
Sbjct: 287 F 287

>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Novel Bosutinib Isoform 1, Previously Thought To Be Bosutinib Length = 293

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 69/136 (50%), Gaps = 12/136 (8%)
Query: 43  KLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVI 101
           +LG G F  V+ A +  T +  A K I+  + +  +  + EIE+L+        +   ++
Sbjct: 18  ELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILAT------CDHPYIV 71
Query: 102 RLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR 161
           +L+  + H G     L +++EF     +  I     +GL   +++ +C+ +L  L++LH 
Sbjct: 72  KLLGAYYHDG----KLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHS 127
Query: 162 ELGIIHTDLKPENILL 177
           +  IIH DLK  N+L+
Sbjct: 128 K-RIIHRDLKAGNVLM 142

>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Su11274 Length = 302

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 69/137 (50%), Gaps = 12/137 (8%)
Query: 43  KLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVI 101
           +LG G F  V+ A +  T +  A K I+  + +  +  + EIE+L+        +   ++
Sbjct: 26  ELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILAT------CDHPYIV 79
Query: 102 RLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR 161
           +L+  + H G     L +++EF     +  I     +GL   +++ +C+ +L  L++LH 
Sbjct: 80  KLLGAYYHDG----KLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHS 135
Query: 162 ELGIIHTDLKPENILLV 178
           +  IIH DLK  N+L+ 
Sbjct: 136 K-RIIHRDLKAGNVLMT 151

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 74/192 (38%), Gaps = 49/192 (25%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEI-QTRQYRAPEVILRAGYSFSVDMWSFAC 301
           KPE  L G     K+ DFG +  A     +++  T  Y  PE+I    +   VD+WS   
Sbjct: 161 KPENLLLGSAGELKIADFGWSVHAPSSRRDDLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 220
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 221 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 243
Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 421
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 244 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSSK 292
Query: 422 RDETKNKSNVEK 433
               +NK +  K
Sbjct: 293 PSNCQNKESASK 304

>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered N- Terminal Helix Length = 350

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  +       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLMIDQQGYIQVTDFGLAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 4/144 (2%)
Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN 96
           RY     LG+G  S V LA D R    VA+K+ +  A  A+     +       +    N
Sbjct: 13  RYELGEILGFGGMSEVHLARDLRDHRDVAVKVLR--ADLARDPSFYLRFRREAQNAAALN 70
Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGL 156
              ++ + D  +   P G    +V+E++    LR I ++    +   +  E+       L
Sbjct: 71  HPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE-GPMTPKRAIEVIADACQAL 129
Query: 157 DYLHRELGIIHTDLKPENILLVST 180
           ++ H+  GIIH D+KP NIL+ +T
Sbjct: 130 NFSHQN-GIIHRDVKPANILISAT 152

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 74/192 (38%), Gaps = 49/192 (25%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA-NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFAC 301
           KPE  L G     K+ DFG +  A + +  +   T  Y  PE+I    +   VD+WS   
Sbjct: 140 KPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 199
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 200 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 222
Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 421
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 223 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSSK 271
Query: 422 RDETKNKSNVEK 433
               +NK +  K
Sbjct: 272 PSNCQNKESASK 283

>pdb|1NA7|A Chain A, Crystal Structure Of The Catalytic Subunit Of Human Protein Kinase Ck2 Length = 329

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 25  HAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIE 84
           +A  V +  N   Y   RKLG G++S V+ A +   +  V +KI K   +       EI+
Sbjct: 26  YASHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKK--NKIKREIK 83
Query: 85  VLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNK 144
           +L  +  G P+    +I L D  K   P  +   +V E + ++  + +    Y+ L    
Sbjct: 84  ILENLRGG-PN----IITLADIVK--DPVSRTPALVFEHVNNTDFKQL----YQTLTDYD 132
Query: 145 VREICKYILTGLDYLHRELGIIHTDLKPENILL 177
           +R     IL  LDY H  +GI+H D+KP N+++
Sbjct: 133 IRFYMYEILKALDYCH-SMGIMHRDVKPHNVMI 164

>pdb|3PG1|A Chain A, Map Kinase Lmampk10 From Leishmania Major (1.95 Angs Resolution) Length = 362

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 25/154 (16%)
Query: 266 ANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCED 324
           ANK     +  R YRAPE++++  G++  VDMWS  C   E+     LF    G  F   
Sbjct: 188 ANK--THYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALF---RGSTFY-- 240
Query: 325 EDHLALMMELIG--KMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSE 382
            + L  ++E++G  K+   +      ++DY                SL  +    +    
Sbjct: 241 -NQLNKIVEVVGTPKIEDVVMFSSPSARDYLRN-------------SLSNVPARAWTAVV 286
Query: 383 TDAREFA-EFLVPLLDFTPEKRPTAQQCLQHPWL 415
             A   A + +  +L+F P++R + +Q L+HP+ 
Sbjct: 287 PTADPVALDLIAKMLEFNPQRRISTEQALRHPYF 320

>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By Roscovitine, Aloisine And Indirubin. Length = 292

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 24/179 (13%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMW 297
           KP+  L   +   K+ +FG A RA     + ++ E+ T  YR P+V+  A  YS S+DMW
Sbjct: 128 KPQNLLINRNGELKLANFGLA-RAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMW 186
Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   ELA       P +     + +D L  +  L+G    +      +  DY     
Sbjct: 187 SAGCIFAELANAGRPLFPGN-----DVDDQLKRIFRLLGTPTEEQWPSMTKLPDY----- 236
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
                +    +     LV+         R   + L  LL   P +R +A++ LQHP+ S
Sbjct: 237 -----KPYPMYPATTSLVNVVPKLNATGR---DLLQNLLKCNPVQRISAEEALQHPYFS 287

>pdb|3UIB|A Chain A, Map Kinase Lmampk10 From Leishmania Major In Complex With Sb203580 Length = 362

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 25/154 (16%)
Query: 266 ANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCED 324
           ANK     +  R YRAPE++++  G++  VDMWS  C   E+     LF    G  F   
Sbjct: 188 ANK--THYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALF---RGSTFY-- 240
Query: 325 EDHLALMMELIG--KMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSE 382
            + L  ++E++G  K+   +      ++DY                SL  +    +    
Sbjct: 241 -NQLNKIVEVVGTPKIEDVVMFSSPSARDYLRN-------------SLSNVPARAWTAVV 286
Query: 383 TDAREFA-EFLVPLLDFTPEKRPTAQQCLQHPWL 415
             A   A + +  +L+F P++R + +Q L+HP+ 
Sbjct: 287 PTADPVALDLIAKMLEFNPQRRISTEQALRHPYF 320

>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent Protein Kinase Reveals Unexpected Apoenzyme Conformation Length = 350

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +++A G
Sbjct: 228 IYQMAAG 234

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 72/192 (37%), Gaps = 49/192 (25%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ-TRQYRAPEVILRAGYSFSVDMWSFAC 301
           KPE  L G     K+ DFG +  A       +  T  Y  PE+I    +   VD+WS   
Sbjct: 140 KPENLLLGSAGELKIADFGWSVHAPSSRRXXLXGTLDYLPPEMIEGRMHDEKVDLWSLGV 199
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 200 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 222
Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 421
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 223 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSSK 271
Query: 422 RDETKNKSNVEK 433
               +NK +  K
Sbjct: 272 PSNCQNKESASK 283

>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta Length = 676

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 242 PKPERCLDGIDMRCKVVDFGNACRANKQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSF 299
           P P+R +       K++D G A   ++     E + T QY APE++ +  Y+ +VD WSF
Sbjct: 156 PGPQRLIH------KIIDLGYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSF 209
Query: 300 ACTAFELATGDMLFAP 315
              AFE  TG   F P
Sbjct: 210 GTLAFECITGFRPFLP 225

>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain. Length = 317

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 252 DMRCKVVDFGNACRAN---KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 308
           DM  K+ DFG A +     ++  +   T  Y APEV+ + G+SF VD+WS  C  + L  
Sbjct: 178 DMDVKIGDFGLATKIEFDGERKKDLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLV 237
Query: 309 GDMLF 313
           G   F
Sbjct: 238 GKPPF 242

>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Compound 902 Length = 301

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 252 DMRCKVVDFGNACRAN---KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 308
           DM  K+ DFG A +     ++  +   T  Y APEV+ + G+SF VD+WS  C  + L  
Sbjct: 162 DMDVKIGDFGLATKIEFDGERKKDLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLV 221
Query: 309 GDMLF 313
           G   F
Sbjct: 222 GKPPF 226

>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta (I4122) Length = 677

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 242 PKPERCLDGIDMRCKVVDFGNACRANKQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSF 299
           P P+R +       K++D G A   ++     E + T QY APE++ +  Y+ +VD WSF
Sbjct: 157 PGPQRLIH------KIIDLGYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSF 210
Query: 300 ACTAFELATGDMLFAP 315
              AFE  TG   F P
Sbjct: 211 GTLAFECITGFRPFLP 226

>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1) Catalytic Domain Length = 317

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 252 DMRCKVVDFGNACRANKQFAEEIQ-----TRQYRAPEVILRAGYSFSVDMWSFACTAFEL 306
           DM  K+ DFG A +   +F  E +     T  Y APEV+ + G+SF VD+WS  C  + L
Sbjct: 178 DMDVKIGDFGLATKI--EFDGERKKTLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTL 235
Query: 307 ATGDMLF 313
             G   F
Sbjct: 236 LVGKPPF 242

>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Adp Length = 317

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 252 DMRCKVVDFGNACRANKQFAEEIQ-----TRQYRAPEVILRAGYSFSVDMWSFACTAFEL 306
           DM  K+ DFG A +   +F  E +     T  Y APEV+ + G+SF VD+WS  C  + L
Sbjct: 178 DMDVKIGDFGLATKI--EFDGERKKXLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTL 235
Query: 307 ATGDMLF 313
             G   F
Sbjct: 236 LVGKPPF 242

>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric Inhibitor Length = 446

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 7/134 (5%)
Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRL 103
           LG G F  V L  +  T  Y A+KI K     A+  +      + V              
Sbjct: 159 LGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHP------F 212
Query: 104 IDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHREL 163
           +   K++      LC V+E+     L     SR +    ++ R     I++ LDYLH E 
Sbjct: 213 LTALKYSFQTHDRLCFVMEYANGGEL-FFHLSRERVFSEDRARFYGAEIVSALDYLHSEK 271
Query: 164 GIIHTDLKPENILL 177
            +++ DLK EN++L
Sbjct: 272 NVVYRDLKLENLML 285

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 73/192 (38%), Gaps = 49/192 (25%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEI-QTRQYRAPEVILRAGYSFSVDMWSFAC 301
           KPE  L G     K+ DFG +  A     + +  T  Y  PE+I    +   VD+WS   
Sbjct: 136 KPENLLLGSAGELKIADFGWSVHAPSSRRDTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 195
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 196 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 218
Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 421
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 219 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSSK 267
Query: 422 RDETKNKSNVEK 433
               +NK +  K
Sbjct: 268 PSNCQNKESASK 279

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 73/192 (38%), Gaps = 49/192 (25%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEI-QTRQYRAPEVILRAGYSFSVDMWSFAC 301
           KPE  L G     K+ DFG +  A      ++  T  Y  PE+I    +   VD+WS   
Sbjct: 136 KPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 195
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 196 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 218
Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 421
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 219 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSSK 267
Query: 422 RDETKNKSNVEK 433
               +NK +  K
Sbjct: 268 PSNCQNKESASK 279

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 13/141 (9%)
Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVI 101
           +KLG GQF  VW+ Y    S+ VA+K  K      QA L E  ++  +          ++
Sbjct: 18  KKLGAGQFGEVWMGY-YNNSTKVAVKTLKPGTMSVQAFLEEANLMKTL------QHDKLV 70
Query: 102 RLIDHFKHAGPNGQHLCMVLEFLGD-SLLRLIKYSRYKGLELNKVREICKYILTGLDYLH 160
           RL        P    + ++ EF+   SLL  +K      + L K+ +    I  G+ Y+ 
Sbjct: 71  RLYAVVTKEEP----IYIITEFMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIE 126
Query: 161 RELGIIHTDLKPENILLVSTI 181
           R+   IH DL+  N+L+  ++
Sbjct: 127 RK-NYIHRDLRAANVLVSESL 146

>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex With N-(4- (5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h- Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide Length = 446

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 7/134 (5%)
Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRL 103
           LG G F  V L  +  T  Y A+KI K     A+  +      + V              
Sbjct: 156 LGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHP------F 209
Query: 104 IDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHREL 163
           +   K++      LC V+E+     L     SR +    ++ R     I++ LDYLH E 
Sbjct: 210 LTALKYSFQTHDRLCFVMEYANGGEL-FFHLSRERVFSEDRARFYGAEIVSALDYLHSEK 268
Query: 164 GIIHTDLKPENILL 177
            +++ DLK EN++L
Sbjct: 269 NVVYRDLKLENLML 282

>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 16/152 (10%)
Query: 27  VRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVL 86
           V VGD     +Y    K+G G    V+ A D  T   VA++ Q +  Q  +  L   E+L
Sbjct: 13  VSVGD--PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIR-QMNLQQQPKKELIINEIL 69
Query: 87  SAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKV 145
               + +P+    ++  +D +      G  L +V+E+L G SL  ++  +    ++  ++
Sbjct: 70  VMRENKNPN----IVNYLDSYLV----GDELWVVMEYLAGGSLTDVVTET---CMDEGQI 118
Query: 146 REICKYILTGLDYLHRELGIIHTDLKPENILL 177
             +C+  L  L++LH    +IH D+K +NILL
Sbjct: 119 AAVCRECLQALEFLHSN-QVIHRDIKSDNILL 149

>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFA---EEIQTRQYRAPEVILRAGYSFSVDMWSF 299
           K +  L G+D   K+ DFG   +   + +   E + T  + APEV+ R  Y   VD+WS 
Sbjct: 143 KSDNILLGMDGSVKLTDFGFCAQITPEQSKRSEMVGTPYWMAPEVVTRKAYGPKVDIWSL 202
Query: 300 ACTAFELATGD 310
              A E+  G+
Sbjct: 203 GIMAIEMIEGE 213

>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 4/144 (2%)
Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN 96
           RY     LG+G  S V LA D R    VA+K+ +  A  A+     +       +    N
Sbjct: 13  RYELGEILGFGGMSEVHLARDLRDHRDVAVKVLR--ADLARDPSFYLRFRREAQNAAALN 70
Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGL 156
              ++ + D  +   P G    +V+E++    LR I ++    +   +  E+       L
Sbjct: 71  HPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE-GPMTPKRAIEVIADACQAL 129
Query: 157 DYLHRELGIIHTDLKPENILLVST 180
           ++ H+  GIIH D+KP NI++ +T
Sbjct: 130 NFSHQN-GIIHRDVKPANIMISAT 152

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 16/152 (10%)
Query: 27  VRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVL 86
           V VGD     +Y    K+G G    V+ A D  T   VA++ Q +  Q  +  L   E+L
Sbjct: 13  VSVGD--PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIR-QMNLQQQPKKELIINEIL 69
Query: 87  SAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKV 145
               + +P+    ++  +D +      G  L +V+E+L G SL  ++  +    ++  ++
Sbjct: 70  VMRENKNPN----IVNYLDSYLV----GDELWVVMEYLAGGSLTDVVTET---CMDEGQI 118
Query: 146 REICKYILTGLDYLHRELGIIHTDLKPENILL 177
             +C+  L  L++LH    +IH D+K +NILL
Sbjct: 119 AAVCRECLQALEFLHSN-QVIHRDIKSDNILL 149

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSF 299
           K +  L G+D   K+ DFG   +   + ++    + T  + APEV+ R  Y   VD+WS 
Sbjct: 143 KSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSL 202
Query: 300 ACTAFELATGD 310
              A E+  G+
Sbjct: 203 GIMAIEMIEGE 213

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 16/152 (10%)
Query: 27  VRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVL 86
           V VGD     +Y    K+G G    V+ A D  T   VA++ Q +  Q  +  L   E+L
Sbjct: 14  VSVGD--PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIR-QMNLQQQPKKELIINEIL 70
Query: 87  SAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKV 145
               + +P+    ++  +D +      G  L +V+E+L G SL  ++  +    ++  ++
Sbjct: 71  VMRENKNPN----IVNYLDSYLV----GDELWVVMEYLAGGSLTDVVTET---CMDEGQI 119
Query: 146 REICKYILTGLDYLHRELGIIHTDLKPENILL 177
             +C+  L  L++LH    +IH D+K +NILL
Sbjct: 120 AAVCRECLQALEFLHSN-QVIHRDIKSDNILL 150

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSF 299
           K +  L G+D   K+ DFG   +   + ++    + T  + APEV+ R  Y   VD+WS 
Sbjct: 144 KSDNILLGMDGSVKLTDFGFCAQITPEQSKRSXMVGTPYWMAPEVVTRKAYGPKVDIWSL 203
Query: 300 ACTAFELATGD 310
              A E+  G+
Sbjct: 204 GIMAIEMIEGE 214

>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 4/144 (2%)
Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN 96
           RY     LG+G  S V LA D R    VA+K+ +  A  A+     +       +    N
Sbjct: 13  RYELGEILGFGGMSEVHLARDLRDHRDVAVKVLR--ADLARDPSFYLRFRREAQNAAALN 70
Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGL 156
              ++ + D  +   P G    +V+E++    LR I ++    +   +  E+       L
Sbjct: 71  HPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE-GPMTPKRAIEVIADACQAL 129
Query: 157 DYLHRELGIIHTDLKPENILLVST 180
           ++ H+  GIIH D+KP NI++ +T
Sbjct: 130 NFSHQN-GIIHRDVKPANIMISAT 152

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 16/152 (10%)
Query: 27  VRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVL 86
           V VGD     +Y    K+G G    V+ A D  T   VA++ Q +  Q  +  L   E+L
Sbjct: 13  VSVGD--PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIR-QMNLQQQPKKELIINEIL 69
Query: 87  SAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKV 145
               + +P+    ++  +D +      G  L +V+E+L G SL  ++  +    ++  ++
Sbjct: 70  VMRENKNPN----IVNYLDSYLV----GDELWVVMEYLAGGSLTDVVTET---CMDEGQI 118
Query: 146 REICKYILTGLDYLHRELGIIHTDLKPENILL 177
             +C+  L  L++LH    +IH D+K +NILL
Sbjct: 119 AAVCRECLQALEFLHSN-QVIHRDIKSDNILL 149

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSF 299
           K +  L G+D   K+ DFG   +   + ++    + T  + APEV+ R  Y   VD+WS 
Sbjct: 143 KSDNILLGMDGSVKLTDFGFCAQITPEQSKRSXMVGTPYWMAPEVVTRKAYGPKVDIWSL 202
Query: 300 ACTAFELATGD 310
              A E+  G+
Sbjct: 203 GIMAIEMIEGE 213

>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate Peptide And Inhibitor Length = 342

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 7/134 (5%)
Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRL 103
           LG G F  V L  +  T  Y A+KI K     A+  +      + V              
Sbjct: 18  LGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHP------F 71
Query: 104 IDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHREL 163
           +   K++      LC V+E+     L     SR +    ++ R     I++ LDYLH E 
Sbjct: 72  LTALKYSFQTHDRLCFVMEYANGGEL-FFHLSRERVFSEDRARFYGAEIVSALDYLHSEK 130
Query: 164 GIIHTDLKPENILL 177
            +++ DLK EN++L
Sbjct: 131 NVVYRDLKLENLML 144

>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate Peptide And Inhibitor Length = 342

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 32/184 (17%)
Query: 252 DMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWSFACTAFELA 307
           D   K+ DFG  C+   +    ++    T +Y APEV+    Y  +VD W      +E+ 
Sbjct: 147 DGHIKITDFG-LCKEGIKDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMM 205
Query: 308 TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA------IGGAQSKDYFDRHG---- 357
            G + F  +  +   E    L LM E+  + PR +       + G   KD   R G    
Sbjct: 206 CGRLPFYNQDHEKLFE----LILMEEI--RFPRTLGPEAKSLLSGLLKKDPKQRLGGGSE 259
Query: 358 DLKRIRRLKFWS-------LDRLLVDKYR---FSETDAREF-AEFLVPLLDFTPEKRPTA 406
           D K I + +F++        ++ L   ++    SETD R F  EF   ++  TP  +  +
Sbjct: 260 DAKEIMQHRFFAGIVWQHVYEKKLSPPFKPQVTSETDTRYFDEEFTAQMITITPPDQDDS 319
Query: 407 QQCL 410
            +C+
Sbjct: 320 MECV 323

>pdb|3O7L|B Chain B, Crystal Structure Of Phospholamban (1-19):pka C-Subunit:amp-Pnp:mg2+ Complex Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  +       +V DFG A R   +      T +Y APE+I+  GY+ +VD W+    
Sbjct: 168 KPENLIIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIIISKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363 Length = 340

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 7/134 (5%)
Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRL 103
           LG G F  V L  +  T  Y A+KI K     A+  +      + V              
Sbjct: 16  LGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHP------F 69
Query: 104 IDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHREL 163
           +   K++      LC V+E+     L     SR +    ++ R     I++ LDYLH E 
Sbjct: 70  LTALKYSFQTHDRLCFVMEYANGGEL-FFHLSRERVFSEDRARFYGAEIVSALDYLHSEK 128
Query: 164 GIIHTDLKPENILL 177
            +++ DLK EN++L
Sbjct: 129 NVVYRDLKLENLML 142

>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363 Length = 340

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 32/184 (17%)
Query: 252 DMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWSFACTAFELA 307
           D   K+ DFG  C+   +    ++    T +Y APEV+    Y  +VD W      +E+ 
Sbjct: 145 DGHIKITDFG-LCKEGIKDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMM 203
Query: 308 TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA------IGGAQSKDYFDRHG---- 357
            G + F  +  +   E    L LM E+  + PR +       + G   KD   R G    
Sbjct: 204 CGRLPFYNQDHEKLFE----LILMEEI--RFPRTLGPEAKSLLSGLLKKDPKQRLGGGSE 257
Query: 358 DLKRIRRLKFWS-------LDRLLVDKYR---FSETDAREF-AEFLVPLLDFTPEKRPTA 406
           D K I + +F++        ++ L   ++    SETD R F  EF   ++  TP  +  +
Sbjct: 258 DAKEIMQHRFFAGIVWQHVYEKKLSPPFKPQVTSETDTRYFDEEFTAQMITITPPDQDDS 317
Query: 407 QQCL 410
            +C+
Sbjct: 318 MECV 321

>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304 Length = 326

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 72/193 (37%), Gaps = 55/193 (28%)
Query: 241 LPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 298
           +PKP         R K++DFG A + +   +F     T ++ APE++         DMWS
Sbjct: 152 VPKP---------RIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWS 202
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
                + L +G   F                                           GD
Sbjct: 203 IGVITYILLSGASPFL------------------------------------------GD 220
Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            K+       +++    D+Y FS T A    +F+  LL   P+KR T Q  LQHPW+  +
Sbjct: 221 TKQETLANVSAVNYEFEDEY-FSNTSALA-KDFIRRLLVKDPKKRMTIQDSLQHPWIKPK 278
Query: 419 NSTRDETKNKSNV 431
           ++ +  ++  S V
Sbjct: 279 DTQQALSRKASAV 291

>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor Length = 341

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 7/134 (5%)
Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRL 103
           LG G F  V L  +  T  Y A+KI K     A+  +      + V              
Sbjct: 17  LGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHP------F 70
Query: 104 IDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHREL 163
           +   K++      LC V+E+     L     SR +    ++ R     I++ LDYLH E 
Sbjct: 71  LTALKYSFQTHDRLCFVMEYANGGEL-FFHLSRERVFSEDRARFYGAEIVSALDYLHSEK 129
Query: 164 GIIHTDLKPENILL 177
            +++ DLK EN++L
Sbjct: 130 NVVYRDLKLENLML 143

>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor Length = 341

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 32/184 (17%)
Query: 252 DMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWSFACTAFELA 307
           D   K+ DFG  C+   +    ++    T +Y APEV+    Y  +VD W      +E+ 
Sbjct: 146 DGHIKITDFG-LCKEGIKDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMM 204
Query: 308 TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA------IGGAQSKDYFDRHG---- 357
            G + F  +  +   E    L LM E+  + PR +       + G   KD   R G    
Sbjct: 205 CGRLPFYNQDHEKLFE----LILMEEI--RFPRTLGPEAKSLLSGLLKKDPKQRLGGGSE 258
Query: 358 DLKRIRRLKFWS-------LDRLLVDKYR---FSETDAREF-AEFLVPLLDFTPEKRPTA 406
           D K I + +F++        ++ L   ++    SETD R F  EF   ++  TP  +  +
Sbjct: 259 DAKEIMQHRFFAGIVWQHVYEKKLSPPFKPQVTSETDTRYFDEEFTAQMITITPPDQDDS 318
Query: 407 QQCL 410
            +C+
Sbjct: 319 MECV 322

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 72/192 (37%), Gaps = 49/192 (25%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEI-QTRQYRAPEVILRAGYSFSVDMWSFAC 301
           KPE  L G     K+ DFG +  A       +  T  Y  PE+I    +   VD+WS   
Sbjct: 135 KPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 194
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 195 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 217
Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 421
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 218 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSSK 266
Query: 422 RDETKNKSNVEK 433
               +NK +  K
Sbjct: 267 PSNCQNKESASK 278

>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 4/144 (2%)
Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN 96
           RY     LG+G  S V LA D R    VA+K+ +  A  A+     +       +    N
Sbjct: 13  RYELGEILGFGGMSEVHLARDLRLHRDVAVKVLR--ADLARDPSFYLRFRREAQNAAALN 70
Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGL 156
              ++ + D  +   P G    +V+E++    LR I ++    +   +  E+       L
Sbjct: 71  HPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE-GPMTPKRAIEVIADACQAL 129
Query: 157 DYLHRELGIIHTDLKPENILLVST 180
           ++ H+  GIIH D+KP NI++ +T
Sbjct: 130 NFSHQN-GIIHRDVKPANIMISAT 152

>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And Drb Length = 373

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 11/148 (7%)
Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADG 92
            +Y    K+G G F  V+ A   +T   VALK   ++     F   AL EI++L  +   
Sbjct: 18  SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHE 77
Query: 93  DPSN--EKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICK 150
           +  N  E C  +   + +  G     + +V +F    L  L+     K   L++++ + +
Sbjct: 78  NVVNLIEICRTKASPYNRCKG----SIYLVFDFCEHDLAGLLSNVLVK-FTLSEIKRVMQ 132
Query: 151 YILTGLDYLHRELGIIHTDLKPENILLV 178
            +L GL Y+HR   I+H D+K  N+L+ 
Sbjct: 133 MLLNGLYYIHRN-KILHRDMKAANVLIT 159

>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain Length = 311

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 23/179 (12%)
Query: 243 KPERCLDGIDMRCKVVDFGNA---CRANKQFAEEIQTRQYRAPEVIL-RAGYSFSVDMWS 298
           KPE  L       K+ DFG A      +  + +E+ TR YR+PE+++    Y   VD+W+
Sbjct: 129 KPENILITKHSVIKLCDFGFARLLTGPSDYYDDEVATRWYRSPELLVGDTQYGPPVDVWA 188
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKM-PRKIAIGGAQSKDYFDRHG 357
             C   EL +G  L+  KS      D D L L+ + +G + PR   +    +  YF    
Sbjct: 189 IGCVFAELLSGVPLWPGKS------DVDQLYLIRKTLGDLIPRHQQV--FSTNQYFS--- 237
Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
                  +K    + +   + +F           L   L   P +R T +Q L HP+  
Sbjct: 238 ------GVKIPDPEDMEPLELKFPNISYPALG-LLKGCLHMDPTERLTCEQLLHHPYFE 289

>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium Tuberculosis Length = 299

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 4/144 (2%)
Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN 96
           RY     LG+G  S V LA D R    VA+K+ +  A  A+     +       +    N
Sbjct: 30  RYELGEILGFGGMSEVHLARDLRLHRDVAVKVLR--ADLARDPSFYLRFRREAQNAAALN 87
Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGL 156
              ++ + D  +   P G    +V+E++    LR I ++    +   +  E+       L
Sbjct: 88  HPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE-GPMTPKRAIEVIADACQAL 146
Query: 157 DYLHRELGIIHTDLKPENILLVST 180
           ++ H+  GIIH D+KP NI++ +T
Sbjct: 147 NFSHQN-GIIHRDVKPANIMISAT 169

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 72/192 (37%), Gaps = 49/192 (25%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEI-QTRQYRAPEVILRAGYSFSVDMWSFAC 301
           KPE  L G     K+ DFG +  A       +  T  Y  PE+I    +   VD+WS   
Sbjct: 140 KPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 199
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 200 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 222
Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 421
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 223 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSSK 271
Query: 422 RDETKNKSNVEK 433
               +NK +  K
Sbjct: 272 PSNCQNKESASK 283

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 72/192 (37%), Gaps = 49/192 (25%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEI-QTRQYRAPEVILRAGYSFSVDMWSFAC 301
           KPE  L G     K+ DFG +  A       +  T  Y  PE+I    +   VD+WS   
Sbjct: 140 KPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 199
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 200 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 222
Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 421
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 223 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSSK 271
Query: 422 RDETKNKSNVEK 433
               +NK +  K
Sbjct: 272 PSNCQNKESASK 283

>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta Length = 294

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 17/139 (12%)
Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKI--QKSAAQFAQAALHEIEVLSAVADGDPSNEKC 99
            K+G G F  V+   D RT   VA+KI   + A    +    EI VLS          +C
Sbjct: 33  EKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLS----------QC 82
Query: 100 VIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDY 158
               +  +  +      L +++E+L G S L L++      L+  ++  I + IL GLDY
Sbjct: 83  DSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGP---LDETQIATILREILKGLDY 139
Query: 159 LHRELGIIHTDLKPENILL 177
           LH E   IH D+K  N+LL
Sbjct: 140 LHSEKK-IHRDIKAANVLL 157

>pdb|3A7F|A Chain A, Human Mst3 Kinase Length = 303

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 17/139 (12%)
Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKI--QKSAAQFAQAALHEIEVLSAVADGDPSNEKC 99
            K+G G F  V+   D RT   VA+KI   + A    +    EI VLS          +C
Sbjct: 28  EKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLS----------QC 77
Query: 100 VIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDY 158
               +  +  +      L +++E+L G S L L++      L+  ++  I + IL GLDY
Sbjct: 78  DSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPG---PLDETQIATILREILKGLDY 134
Query: 159 LHRELGIIHTDLKPENILL 177
           LH E   IH D+K  N+LL
Sbjct: 135 LHSEKK-IHRDIKAANVLL 152

>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6 Length = 321

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 24/141 (17%)
Query: 43  KLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIR 102
           K+G G   IV LA +  +   VA+K+     Q  +  L               NE  ++R
Sbjct: 52  KIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLF--------------NEVVIMR 97
Query: 103 LIDHFK-----HAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGL 156
              HF       +   G+ L +++EFL G +L  ++   R   L   ++  +C+ +L  L
Sbjct: 98  DYQHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQVR---LNEEQIATVCEAVLQAL 154
Query: 157 DYLHRELGIIHTDLKPENILL 177
            YLH + G+IH D+K ++ILL
Sbjct: 155 AYLHAQ-GVIHRDIKSDSILL 174

>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6 Length = 321

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSF 299
           K +  L  +D R K+ DFG   + +K   +    + T  + APEVI R+ Y+  VD+WS 
Sbjct: 168 KSDSILLTLDGRVKLSDFGFCAQISKDVPKRKXLVGTPYWMAPEVISRSLYATEVDIWSL 227
Query: 300 ACTAFELATGD 310
                E+  G+
Sbjct: 228 GIMVIEMVDGE 238

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 72/192 (37%), Gaps = 49/192 (25%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEI-QTRQYRAPEVILRAGYSFSVDMWSFAC 301
           KPE  L G     K+ DFG +  A       +  T  Y  PE+I    +   VD+WS   
Sbjct: 137 KPENLLLGSAGELKIADFGWSVHAPSSRRXXLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 196
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 197 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 219
Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 421
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 220 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSSK 268
Query: 422 RDETKNKSNVEK 433
               +NK +  K
Sbjct: 269 PSNCQNKESASK 280

>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEI--EVLSAVADGDPSNEKCVI 101
           LG G F+ V+ A    T   VA+K+    A +    +  +  EV        PS    ++
Sbjct: 19  LGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPS----IL 74
Query: 102 RLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR 161
            L ++F+    +  ++ +VLE   +  +     +R K    N+ R     I+TG+ YLH 
Sbjct: 75  ELYNYFE----DSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHS 130
Query: 162 ELGIIHTDLKPENILLVSTID 182
             GI+H DL   N+LL   ++
Sbjct: 131 H-GILHRDLTLSNLLLTRNMN 150

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 72/192 (37%), Gaps = 49/192 (25%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEI-QTRQYRAPEVILRAGYSFSVDMWSFAC 301
           KPE  L G     K+ DFG +  A       +  T  Y  PE+I    +   VD+WS   
Sbjct: 138 KPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 197
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 198 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 220
Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 421
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 221 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSSK 269
Query: 422 RDETKNKSNVEK 433
               +NK +  K
Sbjct: 270 PSNCQNKESASK 281

>pdb|3QAM|E Chain E, Crystal Structure Of Glu208ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 33/67 (49%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +Y AP +IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPAIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 72/192 (37%), Gaps = 49/192 (25%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEI-QTRQYRAPEVILRAGYSFSVDMWSFAC 301
           KPE  L G     K+ DFG +  A       +  T  Y  PE+I    +   VD+WS   
Sbjct: 161 KPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 220
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 221 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 243
Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 421
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 244 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSSK 292
Query: 422 RDETKNKSNVEK 433
               +NK +  K
Sbjct: 293 PSNCQNKESASK 304

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 71/192 (36%), Gaps = 49/192 (25%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEI-QTRQYRAPEVILRAGYSFSVDMWSFAC 301
           KPE  L G     K+ DFG +  A       +  T  Y  PE I    +   VD+WS   
Sbjct: 140 KPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEXIEGRXHDEKVDLWSLGV 199
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 200 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 222
Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 421
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 223 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPXLREVLEHPWITANSSK 271
Query: 422 RDETKNKSNVEK 433
               +NK +  K
Sbjct: 272 PSNCQNKESASK 283

>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312 Length = 312

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 72/193 (37%), Gaps = 55/193 (28%)
Query: 241 LPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 298
           +PKP         R K++DFG A + +   +F     T ++ APE++         DMWS
Sbjct: 152 VPKP---------RIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWS 202
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
                + L +G   F                                           GD
Sbjct: 203 IGVITYILLSGASPFL------------------------------------------GD 220
Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            K+       +++    D+Y FS T A    +F+  LL   P+KR T Q  LQHPW+  +
Sbjct: 221 TKQETLANVSAVNYEFEDEY-FSNTSALA-KDFIRRLLVKDPKKRMTIQDSLQHPWIKPK 278
Query: 419 NSTRDETKNKSNV 431
           ++ +  ++  S V
Sbjct: 279 DTQQALSRKASAV 291

>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302 Length = 302

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 75/197 (38%), Gaps = 57/197 (28%)
Query: 241 LPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 298
           +PKP         R K++DFG A + +   +F     T ++ APE++         DMWS
Sbjct: 152 VPKP---------RIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWS 202
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
                + L +G   F                                           GD
Sbjct: 203 IGVITYILLSGASPFL------------------------------------------GD 220
Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            K+       +++    D+Y FS T A    +F+  LL   P+KR T Q  LQHPW+  +
Sbjct: 221 TKQETLANVSAVNYEFEDEY-FSNTSALA-KDFIRRLLVKDPKKRMTIQDSLQHPWIKPK 278
Query: 419 NSTRDETKNKS--NVEK 433
           ++ +  ++  S  N+EK
Sbjct: 279 DTQQALSRKASAVNMEK 295

>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) In Complex With Staurosporine Length = 304

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 17/139 (12%)
Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKI--QKSAAQFAQAALHEIEVLSAVADGDPSNEKC 99
            K+G G F  V+   D RT   VA+KI   + A    +    EI VLS          +C
Sbjct: 13  EKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLS----------QC 62
Query: 100 VIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDY 158
               +  +  +      L +++E+L G S L L++      L+  ++  I + IL GLDY
Sbjct: 63  DSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPG---PLDETQIATILREILKGLDY 119
Query: 159 LHRELGIIHTDLKPENILL 177
           LH E   IH D+K  N+LL
Sbjct: 120 LHSEKK-IHRDIKAANVLL 137

>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) Length = 304

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 17/139 (12%)
Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKI--QKSAAQFAQAALHEIEVLSAVADGDPSNEKC 99
            K+G G F  V+   D RT   VA+KI   + A    +    EI VLS          +C
Sbjct: 13  EKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLS----------QC 62
Query: 100 VIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDY 158
               +  +  +      L +++E+L G S L L++      L+  ++  I + IL GLDY
Sbjct: 63  DSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPG---PLDETQIATILREILKGLDY 119
Query: 159 LHRELGIIHTDLKPENILL 177
           LH E   IH D+K  N+LL
Sbjct: 120 LHSEKK-IHRDIKAANVLL 137

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 73/190 (38%), Gaps = 49/190 (25%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA-NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFAC 301
           KPE  L G     K+ DFG +  A + +  +   T  Y  PE+I    +   VD+WS   
Sbjct: 135 KPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 194
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 195 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 217
Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 421
           I R++F   D        F    AR   + +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 218 ISRVEFTFPD--------FVTEGAR---DLISRLLKHNPSQRPMLREVLEHPWITANSSK 266
Query: 422 RDETKNKSNV 431
               +NK + 
Sbjct: 267 PSNCQNKESA 276

>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb Length = 351

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 11/148 (7%)
Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADG 92
            +Y    K+G G F  V+ A   +T   VALK   ++     F   AL EI++L  +   
Sbjct: 17  SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHE 76
Query: 93  DPSN--EKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICK 150
           +  N  E C  +   + +  G     + +V +F    L  L+     K   L++++ + +
Sbjct: 77  NVVNLIEICRTKASPYNRCKG----SIYLVFDFCEHDLAGLLSNVLVK-FTLSEIKRVMQ 131
Query: 151 YILTGLDYLHRELGIIHTDLKPENILLV 178
            +L GL Y+HR   I+H D+K  N+L+ 
Sbjct: 132 MLLNGLYYIHRN-KILHRDMKAANVLIT 158

>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 Length = 331

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 11/148 (7%)
Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADG 92
            +Y    K+G G F  V+ A   +T   VALK   ++     F   AL EI++L  +   
Sbjct: 18  SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHE 77
Query: 93  DPSN--EKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICK 150
           +  N  E C  +   + +  G     + +V +F    L  L+     K   L++++ + +
Sbjct: 78  NVVNLIEICRTKASPYNRCKG----SIYLVFDFCEHDLAGLLSNVLVK-FTLSEIKRVMQ 132
Query: 151 YILTGLDYLHRELGIIHTDLKPENILLV 178
            +L GL Y+HR   I+H D+K  N+L+ 
Sbjct: 133 MLLNGLYYIHRN-KILHRDMKAANVLIT 159

>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target Length = 303

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 88/393 (22%), Positives = 139/393 (35%), Gaps = 123/393 (31%)
Query: 33  FNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAV 89
            N   Y  Q  +G G  ++V  AY       VA+K   ++K      +  L EI+ +S  
Sbjct: 12  INRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDEL-LKEIQAMS-- 68
Query: 90  ADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKG------LEL 142
                   +C    I  +  +      L +V++ L G S+L +IK+   KG      L+ 
Sbjct: 69  --------QCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDE 120
Query: 143 NKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGS 202
           + +  I + +L GL+YLH+  G IH D+K  NILL                         
Sbjct: 121 STIATILREVLEGLEYLHKN-GQIHRDVKAGNILL------------------------- 154
Query: 203 INGGSTSTMTIVEXXXXXXXXXXXXNISIRRASMGGIELPKPERCLDGIDMRCKVVDFGN 262
              G   ++ I +             +S   A+ G I   K  +              G 
Sbjct: 155 ---GEDGSVQIAD-----------FGVSAFLATGGDITRNKVRKTF-----------VGT 189
Query: 263 ACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFC 322
            C    +  E+++   ++A             D+WSF  TA ELATG    AP     + 
Sbjct: 190 PCWMAPEVMEQVRGYDFKA-------------DIWSFGITAIELATGA---AP-----YH 228
Query: 323 EDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSE 382
           +      LM+ L    P      G Q K+   ++G                         
Sbjct: 229 KYPPMKVLMLTLQNDPPS--LETGVQDKEMLKKYG------------------------- 261
Query: 383 TDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              + F + +   L   PEKRPTA + L+H + 
Sbjct: 262 ---KSFRKMISLCLQKDPEKRPTAAELLRHKFF 291

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 72/192 (37%), Gaps = 49/192 (25%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEI-QTRQYRAPEVILRAGYSFSVDMWSFAC 301
           KPE  L G     K+ DFG +  A       +  T  Y  PE+I    +   VD+WS   
Sbjct: 152 KPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 211
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 212 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 234
Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 421
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 235 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSSK 283
Query: 422 RDETKNKSNVEK 433
               +NK +  K
Sbjct: 284 PSNCQNKESASK 295

>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase 1) Length = 294

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 43  KLGWGQFSIVWLAYDTRTSSYVALKI--QKSAAQFAQAALHEIEVLSAVADGDPSNEKCV 100
           ++G G F  V+   D  T   VA+KI   + A    +    EI VLS          +C 
Sbjct: 26  RIGKGSFGEVYKGIDNHTKEVVAIKIIDLEEAEDEIEDIQQEITVLS----------QCD 75
Query: 101 IRLIDHFKHAGPNGQHLCMVLEFLGD-SLLRLIKYSRYKGLELNKVREICKYILTGLDYL 159
              I  +  +      L +++E+LG  S L L+K      LE   +  I + IL GLDYL
Sbjct: 76  SPYITRYFGSYLKSTKLWIIMEYLGGGSALDLLKPG---PLEETYIATILREILKGLDYL 132
Query: 160 HRELGIIHTDLKPENILL 177
           H E   IH D+K  N+LL
Sbjct: 133 HSERK-IHRDIKAANVLL 149

>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase 1) Length = 294

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 255 CKVVDFGNACR-ANKQFAEE--IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGD 310
            K+ DFG A +  + Q      + T  + APEVI ++ Y F  D+WS   TA ELA G+
Sbjct: 155 VKLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGE 213

>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like Kinase 1 Length = 335

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 252 DMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 308
           D+  K+ DFG A +       +     T  Y APEV+ + G+SF VD+WS  C  + L  
Sbjct: 177 DLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLV 236
Query: 309 GDMLF 313
           G   F
Sbjct: 237 GKPPF 241

>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein Kinase Domain Length = 387

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 67/177 (37%), Gaps = 48/177 (27%)
Query: 243 KPER--CLDGIDMRCKVVDFGNACRANKQFAEEIQTR--QYRAPEVILRAGYSFSVDMWS 298
           KPE   C        K++DFG A + N     ++ T   ++ APE++ R    F  DMW+
Sbjct: 176 KPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWA 235
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
                + L +G    +P +G      ED L                              
Sbjct: 236 IGVLGYVLLSG---LSPFAG------EDDLET---------------------------- 258
Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
           L+ ++R   W  D    D +     +A+   +F+  LL   P KR T    L+HPWL
Sbjct: 259 LQNVKRCD-WEFDE---DAFSSVSPEAK---DFIKNLLQKEPRKRLTVHDALEHPWL 308

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 72/189 (38%), Gaps = 49/189 (25%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEI-QTRQYRAPEVILRAGYSFSVDMWSFAC 301
           KPE  L G     K+ DFG +  A      ++  T  Y  PE+I    +   VD+WS   
Sbjct: 135 KPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 194
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 195 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 217
Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 421
           I R++F   D        F    AR   + +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 218 ISRVEFTFPD--------FVTEGAR---DLISRLLKHNPSQRPMLREVLEHPWITANSSK 266
Query: 422 RDETKNKSN 430
               +NK +
Sbjct: 267 PSNCQNKES 275

>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With Nms-P937 Length = 311

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 252 DMRCKVVDFGNACRAN---KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 308
           D+  K+ DFG A +     ++      T  Y APEV+ + G+SF VD+WS  C  + L  
Sbjct: 153 DLEVKIGDFGLATKVEYDGERKKTLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLV 212
Query: 309 GDMLF 313
           G   F
Sbjct: 213 GKPPF 217

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 13/76 (17%)
Query: 243 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 293
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++     S S
Sbjct: 159 KPENILLNEDMHIQITDFGTAKVLSPESKQARANSF----VGTAQYVSPELLTEKSASKS 214
Query: 294 VDMWSFACTAFELATG 309
            D+W+  C  ++L  G
Sbjct: 215 SDLWALGCIIYQLVAG 230

>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain Length = 290

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 88/393 (22%), Positives = 139/393 (35%), Gaps = 123/393 (31%)
Query: 33  FNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAV 89
            N   Y  Q  +G G  ++V  AY       VA+K   ++K      +  L EI+ +S  
Sbjct: 7   INRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDEL-LKEIQAMS-- 63
Query: 90  ADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKG------LEL 142
                   +C    I  +  +      L +V++ L G S+L +IK+   KG      L+ 
Sbjct: 64  --------QCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDE 115
Query: 143 NKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGS 202
           + +  I + +L GL+YLH+  G IH D+K  NILL                         
Sbjct: 116 STIATILREVLEGLEYLHKN-GQIHRDVKAGNILL------------------------- 149
Query: 203 INGGSTSTMTIVEXXXXXXXXXXXXNISIRRASMGGIELPKPERCLDGIDMRCKVVDFGN 262
              G   ++ I +             +S   A+ G I   K  +              G 
Sbjct: 150 ---GEDGSVQIAD-----------FGVSAFLATGGDITRNKVRKTF-----------VGT 184
Query: 263 ACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFC 322
            C    +  E+++   ++A             D+WSF  TA ELATG    AP     + 
Sbjct: 185 PCWMAPEVMEQVRGYDFKA-------------DIWSFGITAIELATGA---AP-----YH 223
Query: 323 EDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSE 382
           +      LM+ L    P      G Q K+   ++G                         
Sbjct: 224 KYPPMKVLMLTLQNDPPSLET--GVQDKEMLKKYG------------------------- 256
Query: 383 TDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              + F + +   L   PEKRPTA + L+H + 
Sbjct: 257 ---KSFRKMISLCLQKDPEKRPTAAELLRHKFF 286

>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective Gsk-3 Inhibitors Length = 367

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 243 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 298
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 157 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWS 216
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 341
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 217 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 253

>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A Benzolactam-Derived Inhibitor Length = 333

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 252 DMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 308
           D+  K+ DFG A +       +     T  Y APEV+ + G+SF VD+WS  C  + L  
Sbjct: 175 DLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLV 234
Query: 309 GDMLF 313
           G   F
Sbjct: 235 GKPPF 239

>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 311

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 252 DMRCKVVDFGNACRAN---KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 308
           D+  K+ DFG A +     ++      T  Y APEV+ + G+SF VD+WS  C  + L  
Sbjct: 153 DLEVKIGDFGLATKVEYDGERKKTLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLV 212
Query: 309 GDMLF 313
           G   F
Sbjct: 213 GKPPF 217

>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 315

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 252 DMRCKVVDFGNACRAN---KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 308
           D+  K+ DFG A +     ++      T  Y APEV+ + G+SF VD+WS  C  + L  
Sbjct: 157 DLEVKIGDFGLATKVEYDGERKKTLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLV 216
Query: 309 GDMLF 313
           G   F
Sbjct: 217 GKPPF 221

>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With Frattide Peptide Length = 378

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 243 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 298
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 168 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWS 227
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 341
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 228 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 264

>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-3beta Inhibitors Length = 371

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 243 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 298
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 161 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWS 220
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 341
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 221 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 257

>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis- (Indole)maleimide Pyridinophane Inhibitor Length = 352

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 243 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 298
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 149 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWS 208
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 341
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 209 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 245

>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide And Inhibitor 7d Length = 350

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 243 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 298
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 149 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWS 208
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 341
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 209 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 245

>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide Length = 350

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 243 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 298
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 149 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWS 208
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 341
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 209 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 245

>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex Length = 353

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 243 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 298
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 153 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWS 212
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 341
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 213 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 249

>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex Length = 349

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 243 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 298
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 149 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWS 208
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 341
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 209 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 245

>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase 3beta In Complex With An Inhibitor Length = 350

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 243 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 298
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 150 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWS 209
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 341
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 210 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 246

>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex Length = 334

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 72/193 (37%), Gaps = 55/193 (28%)
Query: 241 LPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 298
           +PKP         R K++DFG A + +   +F     T ++ APE++         DMWS
Sbjct: 152 VPKP---------RIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWS 202
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
                + L +G   F                                           GD
Sbjct: 203 IGVITYILLSGASPFL------------------------------------------GD 220
Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            K+       +++    D+Y FS T A    +F+  LL   P+KR T Q  LQHPW+  +
Sbjct: 221 TKQETLANVSAVNYEFEDEY-FSNTSALA-KDFIRRLLVKDPKKRMTIQDSLQHPWIKPK 278
Query: 419 NSTRDETKNKSNV 431
           ++ +  ++  S V
Sbjct: 279 DTQQALSRKASAV 291

>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Imidazopyridine Inhibitor Length = 382

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 243 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 298
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 161 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWS 220
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 341
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 221 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 257

>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta (Gsk3b) In Complex With Inhibitor 142 Length = 430

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 243 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 298
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 183 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWS 242
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 341
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 243 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 279

>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In Complex With A Ruthenium Octasporine Ligand (Osv) Length = 285

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 68/184 (36%), Gaps = 55/184 (29%)
Query: 241 LPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 298
           +PKP         R K++DFG A + +   +F     T ++ APE++         DMWS
Sbjct: 152 VPKP---------RIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWS 202
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
                + L +G   F                                           GD
Sbjct: 203 IGVITYILLSGASPFL------------------------------------------GD 220
Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            K+       +++    D+Y FS T A    +F+  LL   P+KR T Q  LQHPW+  +
Sbjct: 221 TKQETLANVSAVNYEFEDEY-FSNTSALA-KDFIRRLLVKDPKKRMTIQDSLQHPWIKPK 278
Query: 419 NSTR 422
           ++ +
Sbjct: 279 DTQQ 282

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 69/179 (38%), Gaps = 49/179 (27%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA-NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFAC 301
           KPE  L G     K+ DFG +  A + + A    T  Y  PE+I    +   VD+WS   
Sbjct: 135 KPENLLLGSAGELKIADFGWSVHAPSSRRAALCGTLDYLPPEMIEGRMHDEKVDLWSLGV 194
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
             +E                            L+GK P        ++  Y D +   KR
Sbjct: 195 LCYEF---------------------------LVGKPP-------FEANTYQDTY---KR 217
Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS 420
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S
Sbjct: 218 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSS 265

>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5 Length = 317

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 66/169 (39%), Gaps = 48/169 (28%)
Query: 252 DMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 308
           D R K+ DFG   + +K+  +    + T  + APEVI R  Y   VD+WS      E+  
Sbjct: 177 DGRIKLSDFGFCAQVSKEVPKRKXLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMID 236
Query: 309 GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFW 368
           G+  +          +E  L  M  +   +P ++               DL ++  +   
Sbjct: 237 GEPPYF---------NEPPLQAMRRIRDSLPPRVK--------------DLHKVSSVLRG 273
Query: 369 SLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 417
            LD +LV          RE            P +R TAQ+ L HP+L L
Sbjct: 274 FLDLMLV----------RE------------PSQRATAQELLGHPFLKL 300

>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536 Length = 294

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 252 DMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 308
           D+  K+ DFG A +       +     T  Y APEV+ + G+SF VD+WS  C  + L  
Sbjct: 151 DLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLV 210
Query: 309 GDMLF 313
           G   F
Sbjct: 211 GKPPF 215

>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 16/152 (10%)
Query: 27  VRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVL 86
           V VGD     +Y    K+G G    V+ A D  T   VA++ Q +  Q  +  L   E+L
Sbjct: 14  VSVGD--PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIR-QMNLQQQPKKELIINEIL 70
Query: 87  SAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKV 145
               + +P+    ++  +D +      G  L +V+E+L G SL  ++  +    ++  ++
Sbjct: 71  VMRENKNPN----IVNYLDSYLV----GDELWVVMEYLAGGSLTDVVTET---CMDEGQI 119
Query: 146 REICKYILTGLDYLHRELGIIHTDLKPENILL 177
             +C+  L  L++LH    +IH ++K +NILL
Sbjct: 120 AAVCRECLQALEFLHSN-QVIHRNIKSDNILL 150

>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSF 299
           K +  L G+D   K+ DFG   +   + ++    + T  + APEV+ R  Y   VD+WS 
Sbjct: 144 KSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSL 203
Query: 300 ACTAFELATGD 310
              A E+  G+
Sbjct: 204 GIMAIEMIEGE 214

>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With 3-Indolyl-4- Arylmaleimide Inhibitor Length = 391

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 243 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 298
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 154 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWS 213
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 341
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 214 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 250

>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 331

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 15/150 (10%)
Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADG 92
            +Y    K+G G F  V+ A   +T   VALK   ++     F   AL EI++L  +   
Sbjct: 18  SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHE 77
Query: 93  DPSNEKCVIRLIDHFK-HAGPNGQ---HLCMVLEFLGDSLLRLIKYSRYKGLELNKVREI 148
           +      V+ LI+  +  A P  +    + +V +F    L  L+     K   L++++ +
Sbjct: 78  N------VVNLIEICRTKASPYNRCKASIYLVFDFCEHDLAGLLSNVLVK-FTLSEIKRV 130
Query: 149 CKYILTGLDYLHRELGIIHTDLKPENILLV 178
            + +L GL Y+HR   I+H D+K  N+L+ 
Sbjct: 131 MQMLLNGLYYIHRN-KILHRDMKAANVLIT 159

>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With 6-Bromoindirubin-3'-Oxime Length = 350

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 243 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 298
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 149 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWS 208
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 341
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 209 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 245

>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor That Attenuates Hyperactivity In Clock Mutant Mice Length = 350

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 243 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 298
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 149 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWS 208
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 341
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 209 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 245

>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With N6-Cyclopentyladenosine Length = 295

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 68/184 (36%), Gaps = 55/184 (29%)
Query: 241 LPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 298
           +PKP         R K++DFG A + +   +F     T ++ APE++         DMWS
Sbjct: 152 VPKP---------RIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWS 202
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
                + L +G   F                                           GD
Sbjct: 203 IGVITYILLSGASPFL------------------------------------------GD 220
Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            K+       +++    D+Y FS T A    +F+  LL   P+KR T Q  LQHPW+  +
Sbjct: 221 TKQETLANVSAVNYEFEDEY-FSNTSALA-KDFIRRLLVKDPKKRMTIQDSLQHPWIKPK 278
Query: 419 NSTR 422
           ++ +
Sbjct: 279 DTQQ 282

>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Benzoimidazol Inhibitor Length = 372

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 243 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 298
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 162 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWS 221
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 341
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 222 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 258

>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The Death Associated Protein Kinase Catalytic Domain With Amppnp Length = 295

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 68/184 (36%), Gaps = 55/184 (29%)
Query: 241 LPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 298
           +PKP         R K++DFG A + +   +F     T ++ APE++         DMWS
Sbjct: 152 VPKP---------RIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWS 202
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
                + L +G   F                                           GD
Sbjct: 203 IGVITYILLSGASPFL------------------------------------------GD 220
Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            K+       +++    D+Y FS T A    +F+  LL   P+KR T Q  LQHPW+  +
Sbjct: 221 TKQETLANVSAVNYEFEDEY-FSNTSALA-KDFIRRLLVKDPKKRMTIQDSLQHPWIKPK 278
Query: 419 NSTR 422
           ++ +
Sbjct: 279 DTQQ 282

>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor Length = 465

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 243 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 298
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 228 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWS 287
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 341
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 288 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 324

>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp Length = 295

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 68/184 (36%), Gaps = 55/184 (29%)
Query: 241 LPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 298
           +PKP         R K++DFG A + +   +F     T ++ APE++         DMWS
Sbjct: 152 VPKP---------RIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWS 202
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
                + L +G   F                                           GD
Sbjct: 203 IGVITYILLSGASPFL------------------------------------------GD 220
Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            K+       +++    D+Y FS T A    +F+  LL   P+KR T Q  LQHPW+  +
Sbjct: 221 TKQETLANVSAVNYEFEDEY-FSNTSALA-KDFIRRLLVKDPKKRMTIQDSLQHPWIKPK 278
Query: 419 NSTR 422
           ++ +
Sbjct: 279 DTQQ 282

>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta. Length = 352

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 243 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 298
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 149 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWS 208
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 341
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 209 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 245

>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase In Complex With Amppnp And Mg2+ Length = 295

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 68/184 (36%), Gaps = 55/184 (29%)
Query: 241 LPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 298
           +PKP         R K++DFG A + +   +F     T ++ APE++         DMWS
Sbjct: 152 VPKP---------RIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWS 202
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
                + L +G   F                                           GD
Sbjct: 203 IGVITYILLSGASPFL------------------------------------------GD 220
Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            K+       +++    D+Y FS T A    +F+  LL   P+KR T Q  LQHPW+  +
Sbjct: 221 TKQETLANVSAVNYEFEDEY-FSNTSALA-KDFIRRLLVKDPKKRMTIQDSLQHPWIKPK 278
Query: 419 NSTR 422
           ++ +
Sbjct: 279 DTQQ 282

>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine Length = 424

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 243 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 298
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 187 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWS 246
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 341
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 247 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 283

>pdb|1RDQ|E Chain E, Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 33/67 (49%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +  APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEALAPEIILSKGYNKAVDWWALGVL 227
Query: 303 AFELATG 309
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In Complexed With Inhibitor Length = 414

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 243 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 298
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 177 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWS 236
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 341
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 237 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 273

>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With Bound Inhibitor Fragment Length = 293

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 68/184 (36%), Gaps = 55/184 (29%)
Query: 241 LPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 298
           +PKP         R K++DFG A + +   +F     T ++ APE++         DMWS
Sbjct: 151 VPKP---------RIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWS 201
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
                + L +G   F                                           GD
Sbjct: 202 IGVITYILLSGASPFL------------------------------------------GD 219
Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            K+       +++    D+Y FS T A    +F+  LL   P+KR T Q  LQHPW+  +
Sbjct: 220 TKQETLANVSAVNYEFEDEY-FSNTSALA-KDFIRRLLVKDPKKRMTIQDSLQHPWIKPK 277
Query: 419 NSTR 422
           ++ +
Sbjct: 278 DTQQ 281

>pdb|2A27|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form With 8 Monomers In The Asymmetric Unit Length = 321

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 14/158 (8%)
Query: 28  RVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTS-SYVALKIQKSAAQFAQAALHEIEVL 86
           +V D ++ G      +LG GQF+IV    +  T   Y A  I+K  ++ ++  +   E+ 
Sbjct: 9   KVEDFYDIGE-----ELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIE 63
Query: 87  SAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKV 145
             V+         VI L D ++    N   + ++LE + G  L   +  ++ + L   + 
Sbjct: 64  REVSILRQVLHHNVITLHDVYE----NRTDVVLILELVSGGELFDFL--AQKESLSEEEA 117
Query: 146 REICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP 183
               K IL G++YLH +  I H DLKPENI+L+    P
Sbjct: 118 TSFIKQILDGVNYLHTK-KIAHFDLKPENIMLLDKNIP 154

>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp Length = 422

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 243 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 298
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 185 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWS 244
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 341
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 245 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 281

>pdb|1Z9X|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form With 3 Monomers In The Asymmetric Unit Length = 321

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 14/158 (8%)
Query: 28  RVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTS-SYVALKIQKSAAQFAQAALHEIEVL 86
           +V D ++ G      +LG GQF+IV    +  T   Y A  I+K  ++ ++  +   E+ 
Sbjct: 9   KVEDFYDIGE-----ELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIE 63
Query: 87  SAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKV 145
             V+         VI L D ++    N   + ++LE + G  L   +  ++ + L   + 
Sbjct: 64  REVSILRQVLHHNVITLHDVYE----NRTDVVLILELVSGGELFDFL--AQKESLSEEEA 117
Query: 146 REICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP 183
               K IL G++YLH +  I H DLKPENI+L+    P
Sbjct: 118 TSFIKQILDGVNYLHTK-KIAHFDLKPENIMLLDKNIP 154

>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic Domain Of Death-Associated Protein Kinase With Atp Analogue And Mn. Length = 294

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 68/184 (36%), Gaps = 55/184 (29%)
Query: 241 LPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 298
           +PKP         R K++DFG A + +   +F     T ++ APE++         DMWS
Sbjct: 151 VPKP---------RIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWS 201
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
                + L +G   F                                           GD
Sbjct: 202 IGVITYILLSGASPFL------------------------------------------GD 219
Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            K+       +++    D+Y FS T A    +F+  LL   P+KR T Q  LQHPW+  +
Sbjct: 220 TKQETLANVSAVNYEFEDEY-FSNTSALA-KDFIRRLLVKDPKKRMTIQDSLQHPWIKPK 277
Query: 419 NSTR 422
           ++ +
Sbjct: 278 DTQQ 281

>pdb|1ZWS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Drp-1 Kinase Length = 288

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 14/158 (8%)
Query: 28  RVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTS-SYVALKIQKSAAQFAQAALHEIEVL 86
           +V D ++ G      +LG GQF+IV    +  T   Y A  I+K  ++ ++  +   E+ 
Sbjct: 9   KVEDFYDIGE-----ELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIE 63
Query: 87  SAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKV 145
             V+         VI L D ++    N   + ++LE + G  L   +  ++ + L   + 
Sbjct: 64  REVSILRQVLHHNVITLHDVYE----NRTDVVLILELVSGGELFDFL--AQKESLSEEEA 117
Query: 146 REICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP 183
               K IL G++YLH +  I H DLKPENI+L+    P
Sbjct: 118 TSFIKQILDGVNYLHTK-KIAHFDLKPENIMLLDKNIP 154

>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Length = 420

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 243 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 298
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 183 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWS 242
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 341
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 243 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 279

>pdb|2A2A|A Chain A, High-resolution Crystallographic Analysis Of The Autoinhibited Conformation Of A Human Death-associated Protein Kinase Length = 321

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 14/158 (8%)
Query: 28  RVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTS-SYVALKIQKSAAQFAQAALHEIEVL 86
           +V D ++ G      +LG GQF+IV    +  T   Y A  I+K  ++ ++  +   E+ 
Sbjct: 9   KVEDFYDIGE-----ELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIE 63
Query: 87  SAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKV 145
             V+         VI L D ++    N   + ++LE + G  L   +  ++ + L   + 
Sbjct: 64  REVSILRQVLHHNVITLHDVYE----NRTDVVLILELVSGGELFDFL--AQKESLSEEEA 117
Query: 146 REICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP 183
               K IL G++YLH +  I H DLKPENI+L+    P
Sbjct: 118 TSFIKQILDGVNYLHTK-KIAHFDLKPENIMLLDKNIP 154

>pdb|1WMK|A Chain A, Human Death-Associated Kinase Drp-1, Mutant S308d D40 Length = 321

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 14/158 (8%)
Query: 28  RVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTS-SYVALKIQKSAAQFAQAALHEIEVL 86
           +V D ++ G      +LG GQF+IV    +  T   Y A  I+K  ++ ++  +   E+ 
Sbjct: 9   KVEDFYDIGE-----ELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIE 63
Query: 87  SAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKV 145
             V+         VI L D ++    N   + ++LE + G  L   +  ++ + L   + 
Sbjct: 64  REVSILRQVLHHNVITLHDVYE----NRTDVVLILELVSGGELFDFL--AQKESLSEEEA 117
Query: 146 REICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP 183
               K IL G++YLH +  I H DLKPENI+L+    P
Sbjct: 118 TSFIKQILDGVNYLHTK-KIAHFDLKPENIMLLDKNIP 154

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 13/141 (9%)
Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVI 101
           ++LG GQF  VW+ Y    S+ VA+K  K      QA L E  ++  +          ++
Sbjct: 19  KRLGAGQFGEVWMGY-YNNSTKVAVKTLKPGTMSVQAFLEEANLMKTL------QHDKLV 71
Query: 102 RLIDHFKHAGPNGQHLCMVLEFLGD-SLLRLIKYSRYKGLELNKVREICKYILTGLDYLH 160
           RL        P    + ++ E++   SLL  +K      + L K+ +    I  G+ Y+ 
Sbjct: 72  RLYAVVTREEP----IYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIE 127
Query: 161 RELGIIHTDLKPENILLVSTI 181
           R+   IH DL+  N+L+  ++
Sbjct: 128 RK-NYIHRDLRAANVLVSESL 147

>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain Kinase Loc340156. Length = 373

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKS-AAQFAQAALHEIEVLSAVADGDPSNEKCVIR 102
           LG G+F  V    +T T   +A KI K+   +  +   +EI V++ +   D +N   +I+
Sbjct: 97  LGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQL---DHAN---LIQ 150
Query: 103 LIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR 161
           L D F+    +   + +V+E++ G  L   I    Y   EL+ +    K I  G+ ++H 
Sbjct: 151 LYDAFE----SKNDIVLVMEYVDGGELFDRIIDESYNLTELDTIL-FMKQICEGIRHMH- 204
Query: 162 ELGIIHTDLKPENILLVS 179
           ++ I+H DLKPENIL V+
Sbjct: 205 QMYILHLDLKPENILCVN 222

>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In Complex With Small Molecular Inhibitors Length = 278

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 64/177 (36%), Gaps = 55/177 (31%)
Query: 241 LPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 298
           +PKP         R K++DFG A + +   +F     T ++ APE++         DMWS
Sbjct: 152 VPKP---------RIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWS 202
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
                + L +G   F                                           GD
Sbjct: 203 IGVITYILLSGASPFL------------------------------------------GD 220
Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
            K+       +++    D+Y FS T A    +F+  LL   P+KR T Q  LQHPW+
Sbjct: 221 TKQETLANVSAVNYEFEDEY-FSNTSALA-KDFIRRLLVKDPKKRMTIQDSLQHPWI 275

>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277 Length = 277

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 64/177 (36%), Gaps = 55/177 (31%)
Query: 241 LPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 298
           +PKP         R K++DFG A + +   +F     T ++ APE++         DMWS
Sbjct: 152 VPKP---------RIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWS 202
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
                + L +G   F                                           GD
Sbjct: 203 IGVITYILLSGASPFL------------------------------------------GD 220
Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
            K+       +++    D+Y FS T A    +F+  LL   P+KR T Q  LQHPW+
Sbjct: 221 TKQETLANVSAVNYEFEDEY-FSNTSALA-KDFIRRLLVKDPKKRMTIQDSLQHPWI 275

>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase Kinase 5 Length = 295

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 256 KVVDFGNACR---ANKQFAEEIQTRQYRAPEVILRA--GYSFSVDMWSFACTAFELATGD 310
           K+ DFG + R    N        T QY APE+I +   GY  + D+WS  CT  E+ATG 
Sbjct: 163 KISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGK 222
Query: 311 MLF 313
             F
Sbjct: 223 PPF 225

>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant Length = 334

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 24/157 (15%)
Query: 29  VGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTS-SYVALKIQKSAAQFAQAALHEIEVLS 87
           V D ++ G      +LG GQF++V    +  T   Y A  I+K   + ++          
Sbjct: 9   VDDYYDTGE-----ELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSR---------R 54
Query: 88  AVADGDPSNEKCVIRLIDH-----FKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLE 141
            V+  D   E  +++ I H           N   + ++LE + G  L   +  +  + L 
Sbjct: 55  GVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFL--AEKESLT 112
Query: 142 LNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 178
             +  E  K IL G+ YLH  L I H DLKPENI+L+
Sbjct: 113 EEEATEFLKQILNGVYYLH-SLQIAHFDLKPENIMLL 148

>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant Length = 334

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 71/193 (36%), Gaps = 55/193 (28%)
Query: 241 LPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 298
           +PKP         R K++DFG A + +   +F     T  + APE++         DMWS
Sbjct: 152 VPKP---------RIKIIDFGLAHKIDFGNEFKNIFGTPAFVAPEIVNYEPLGLEADMWS 202
Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
                + L +G   F                                           GD
Sbjct: 203 IGVITYILLSGASPFL------------------------------------------GD 220
Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
            K+       +++    D+Y FS T A    +F+  LL   P+KR T Q  LQHPW+  +
Sbjct: 221 TKQETLANVSAVNYEFEDEY-FSNTSALA-KDFIRRLLVKDPKKRMTIQDSLQHPWIKPK 278
Query: 419 NSTRDETKNKSNV 431
           ++ +  ++  S V
Sbjct: 279 DTQQALSRKASAV 291

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 72/192 (37%), Gaps = 49/192 (25%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEI-QTRQYRAPEVILRAGYSFSVDMWSFAC 301
           KPE  L G     K+ +FG +  A       +  T  Y  PE+I    +   VD+WS   
Sbjct: 137 KPENLLLGSAGELKIANFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 196
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 197 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 219
Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 421
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 220 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSSK 268
Query: 422 RDETKNKSNVEK 433
               +NK +  K
Sbjct: 269 PSNCQNKESASK 280

>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating Kinase 1 (Ask1) With Imidazopyridine Inhibitor Length = 269

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 256 KVVDFGNACR---ANKQFAEEIQTRQYRAPEVILRA--GYSFSVDMWSFACTAFELATGD 310
           K+ DFG + R    N        T QY APE+I +   GY  + D+WS  CT  E+ATG 
Sbjct: 149 KISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGK 208
Query: 311 MLF 313
             F
Sbjct: 209 PPF 211

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 243 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 293
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 159 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSAXKS 214
Query: 294 VDMWSFACTAFELATG 309
            D+W+  C  ++L  G
Sbjct: 215 SDLWALGCIIYQLVAG 230

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 69/179 (38%), Gaps = 49/179 (27%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEI-QTRQYRAPEVILRAGYSFSVDMWSFAC 301
           KPE  L G     K+ DFG +  A     +++  T  Y  PE+I    +   VD+WS   
Sbjct: 138 KPENLLLGSAGELKIADFGWSVHAPSSRRDDLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 197
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 198 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 220
Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS 420
           I R++F   D        F    AR   + +  LL   P +RP  ++ L+HPW++  +S
Sbjct: 221 ISRVEFTFPD--------FVTEGAR---DLISRLLKHNPSQRPMLREVLEHPWITANSS 268

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 22/149 (14%)
Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPS 95
           G YI    LG G F  V +     T   VA+KI           L+  ++ S    G   
Sbjct: 16  GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKI-----------LNRQKIRSLDVVGKIR 64
Query: 96  NEKCVIRLIDH-----FKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREI 148
            E   ++L  H               + MV+E++  G+    + K  R   L+  + R +
Sbjct: 65  REIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYICKNGR---LDEKESRRL 121
Query: 149 CKYILTGLDYLHRELGIIHTDLKPENILL 177
            + IL+G+DY HR + ++H DLKPEN+LL
Sbjct: 122 FQQILSGVDYCHRHM-VVHRDLKPENVLL 149

>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 22/149 (14%)
Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPS 95
           G Y+    LG G F  V +     T   VA+KI           L+  ++ S    G   
Sbjct: 11  GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKI-----------LNRQKIRSLDVVGKIK 59
Query: 96  NEKCVIRLIDH-----FKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREI 148
            E   ++L  H                 MV+E++  G+    + K+ R + +E    R +
Sbjct: 60  REIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEME---ARRL 116
Query: 149 CKYILTGLDYLHRELGIIHTDLKPENILL 177
            + IL+ +DY HR + ++H DLKPEN+LL
Sbjct: 117 FQQILSAVDYCHRHM-VVHRDLKPENVLL 144

>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 22/149 (14%)
Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPS 95
           G Y+    LG G F  V +     T   VA+KI           L+  ++ S    G   
Sbjct: 11  GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKI-----------LNRQKIRSLDVVGKIK 59
Query: 96  NEKCVIRLIDH-----FKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREI 148
            E   ++L  H                 MV+E++  G+    + K+ R + +E    R +
Sbjct: 60  REIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEME---ARRL 116
Query: 149 CKYILTGLDYLHRELGIIHTDLKPENILL 177
            + IL+ +DY HR + ++H DLKPEN+LL
Sbjct: 117 FQQILSAVDYCHRHM-VVHRDLKPENVLL 144

>pdb|2HW6|A Chain A, Crystal Structure Of Mnk1 Catalytic Domain Length = 307

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 77/182 (42%), Gaps = 26/182 (14%)
Query: 44  LGWGQFSIVWLAYDTRTSSYVALKI-QKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIR 102
           LG G ++ V  A   +     A+KI +K A         E+E L           K ++ 
Sbjct: 21  LGEGAYAKVQGAVSLQNGKEYAVKIIEKQAGHSRSRVFREVETLYQC-----QGNKNILE 75
Query: 103 LIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR 161
           LI+ F+    +     +V E L G S+L  I+  + K     +   + + +   LD+LH 
Sbjct: 76  LIEFFE----DDTRFYLVFEKLQGGSILAHIQ--KQKHFNEREASRVVRDVAAALDFLHT 129
Query: 162 ELGIIHTDLKPENILL-----VSTIDPSKDPIRSGL------TPILERPEGSINGGSTST 210
           + GI H DLKPENIL      VS +      + SG+      TPI   PE +   GS   
Sbjct: 130 K-GIAHRDLKPENILCESPEKVSPVKICDFDLGSGMKLNNSCTPIT-TPELTTPCGSAEY 187
Query: 211 MT 212
           M 
Sbjct: 188 MA 189

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 243 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 293
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 156 KPENILLNEDMHIQITDFGTAKVLSPESKQARANSF----VGTAQYVSPELLTEKSACKS 211
Query: 294 VDMWSFACTAFELATG 309
            D+W+  C  ++L  G
Sbjct: 212 SDLWALGCIIYQLVAG 227

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 243 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 293
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 160 KPENILLNEDMHIQITDFGTAKVLSPESKQARANSF----VGTAQYVSPELLTEKSACKS 215
Query: 294 VDMWSFACTAFELATG 309
            D+W+  C  ++L  G
Sbjct: 216 SDLWALGCIIYQLVAG 231

>pdb|2YA9|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2 Length = 361

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 14/158 (8%)
Query: 28  RVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTS-SYVALKIQKSAAQFAQAALHEIEVL 86
           +V D ++ G      +LG GQF+IV    +  T   Y A  I+K  ++ ++  +   E+ 
Sbjct: 9   KVEDFYDIGE-----ELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIE 63
Query: 87  SAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKV 145
             V+         +I L D ++    N   + ++LE + G  L   +  ++ + L   + 
Sbjct: 64  REVSILRQVLHPNIITLHDVYE----NRTDVVLILELVSGGELFDFL--AQKESLSEEEA 117
Query: 146 REICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP 183
               K IL G++YLH +  I H DLKPENI+L+    P
Sbjct: 118 TSFIKQILDGVNYLHTK-KIAHFDLKPENIMLLDKNIP 154

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 243 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 293
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 162 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 217
Query: 294 VDMWSFACTAFELATG 309
            D+W+  C  ++L  G
Sbjct: 218 SDLWALGCIIYQLVAG 233

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 243 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 293
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 159 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 214
Query: 294 VDMWSFACTAFELATG 309
            D+W+  C  ++L  G
Sbjct: 215 SDLWALGCIIYQLVAG 230

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 243 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 293
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 141 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 196
Query: 294 VDMWSFACTAFELATG 309
            D+W+  C  ++L  G
Sbjct: 197 SDLWALGCIIYQLVAG 212

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 243 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 293
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 159 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 214
Query: 294 VDMWSFACTAFELATG 309
            D+W+  C  ++L  G
Sbjct: 215 SDLWALGCIIYQLVAG 230

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 243 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 293
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 157 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 212
Query: 294 VDMWSFACTAFELATG 309
            D+W+  C  ++L  G
Sbjct: 213 SDLWALGCIIYQLVAG 228

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 243 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 293
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 156 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 211
Query: 294 VDMWSFACTAFELATG 309
            D+W+  C  ++L  G
Sbjct: 212 SDLWALGCIIYQLVAG 227

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 243 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 293
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 157 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 212
Query: 294 VDMWSFACTAFELATG 309
            D+W+  C  ++L  G
Sbjct: 213 SDLWALGCIIYQLVAG 228

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 243 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 293
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 159 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 214
Query: 294 VDMWSFACTAFELATG 309
            D+W+  C  ++L  G
Sbjct: 215 SDLWALGCIIYQLVAG 230

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 243 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 293
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 159 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 214
Query: 294 VDMWSFACTAFELATG 309
            D+W+  C  ++L  G
Sbjct: 215 SDLWALGCIIYQLVAG 230

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 243 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 293
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 157 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 212
Query: 294 VDMWSFACTAFELATG 309
            D+W+  C  ++L  G
Sbjct: 213 SDLWALGCIIYQLVAG 228

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 243 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 293
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 160 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 215
Query: 294 VDMWSFACTAFELATG 309
            D+W+  C  ++L  G
Sbjct: 216 SDLWALGCIIYQLVAG 231

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 69/179 (38%), Gaps = 49/179 (27%)
Query: 243 KPERCLDGIDMRCKVVDFGNACRA-NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFAC 301
           KPE  L G     K+ DFG +  A + + A    T  Y  PE+I    +   VD+WS   
Sbjct: 135 KPENLLLGSAGELKIADFGWSVHAPSSRRAALCGTLDYLPPEMIEGRMHDEKVDLWSLGV 194
Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 195 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 217
Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS 420
           I R++F   D        F    AR   + +  LL   P +RP  ++ L+HPW++  +S
Sbjct: 218 ISRVEFTFPD--------FVTEGAR---DLISRLLKHNPSQRPMLREVLEHPWITANSS 265

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 243 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 293
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 135 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 190
Query: 294 VDMWSFACTAFELATG 309
            D+W+  C  ++L  G
Sbjct: 191 SDLWALGCIIYQLVAG 206

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 243 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 293
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 134 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 189
Query: 294 VDMWSFACTAFELATG 309
            D+W+  C  ++L  G
Sbjct: 190 SDLWALGCIIYQLVAG 205

>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 4/144 (2%)
Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN 96
           RY     LG+G  S V LA D R    VA+K+ +  A  A+     +       +    N
Sbjct: 13  RYELGEILGFGGMSEVHLARDLRLHRDVAVKVLR--ADLARDPSFYLRFRREAQNAAALN 70
Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGL 156
              ++ +    +   P G    +V+E++    LR I ++    +   +  E+       L
Sbjct: 71  HPAIVAVYATGEAETPAGPLPYIVMEYVDGVTLRDIVHTE-GPMTPKRAIEVIADACQAL 129
Query: 157 DYLHRELGIIHTDLKPENILLVST 180
           ++ H+  GIIH D+KP NI++ +T
Sbjct: 130 NFSHQN-GIIHRDVKPANIMISAT 152

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 243 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 293
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 157 KPENILLNEDMHIQITDFGTAKVLSPESKQARANAF----VGTAQYVSPELLTEKSACKS 212
Query: 294 VDMWSFACTAFELATG 309
            D+W+  C  ++L  G
Sbjct: 213 SDLWALGCIIYQLVAG 228

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 243 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 293
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 137 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 192
Query: 294 VDMWSFACTAFELATG 309
            D+W+  C  ++L  G
Sbjct: 193 SDLWALGCIIYQLVAG 208

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 243 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 293
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 136 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 191
Query: 294 VDMWSFACTAFELATG 309
            D+W+  C  ++L  G
Sbjct: 192 SDLWALGCIIYQLVAG 207

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 243 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 293
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 164 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 219
Query: 294 VDMWSFACTAFELATG 309
            D+W+  C  ++L  G
Sbjct: 220 SDLWALGCIIYQLVAG 235

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 20/145 (13%)
Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKI----QKSAAQFAQAALHEIEVLSAVADGDPSNE 97
           R LG G+F  V+LA + ++   +ALK+    Q   A        E+E+ S +   +    
Sbjct: 18  RPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRHPN---- 73
Query: 98  KCVIRLIDHFKHAGPNGQHLCMVLEF--LGDSLLRLIKYSRYKGLELNKVREICKYILTG 155
             ++RL  +F  A      + ++LE+  LG     L K SR+   +  +       +   
Sbjct: 74  --ILRLYGYFHDA----TRVYLILEYAPLGTVYRELQKLSRF---DEQRTATYITELANA 124
Query: 156 LDYLHRELGIIHTDLKPENILLVST 180
           L Y H +  +IH D+KPEN+LL S 
Sbjct: 125 LSYCHSK-RVIHRDIKPENLLLGSN 148

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 12/81 (14%)
Query: 252 DMRCKVVDFGNACRAN----KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELA 307
           D   K+ DFG  C+ N     +  E   T  Y APE++L   Y+ SVD WSF    +E+ 
Sbjct: 155 DGHIKIADFG-MCKENMLGDAKTNEFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEML 213
Query: 308 TGDMLFAPKSGQGFCEDEDHL 328
            G    +P  GQ    DE+ L
Sbjct: 214 IGQ---SPFHGQ----DEEEL 227

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 20/145 (13%)
Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKI----QKSAAQFAQAALHEIEVLSAVADGDPSNE 97
           R LG G+F  V+LA + ++   +ALK+    Q   A        E+E+ S +   +    
Sbjct: 18  RPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRHPN---- 73
Query: 98  KCVIRLIDHFKHAGPNGQHLCMVLEF--LGDSLLRLIKYSRYKGLELNKVREICKYILTG 155
             ++RL  +F  A      + ++LE+  LG     L K SR+   +  +       +   
Sbjct: 74  --ILRLYGYFHDA----TRVYLILEYAPLGTVYRELQKLSRF---DEQRTATYITELANA 124
Query: 156 LDYLHRELGIIHTDLKPENILLVST 180
           L Y H +  +IH D+KPEN+LL S 
Sbjct: 125 LSYCHSK-RVIHRDIKPENLLLGSN 148

>pdb|2PZI|A Chain A, Crystal Structure Of Protein Kinase Pkng From Mycobacterium Tuberculosis In Complex With Tetrahydrobenzothiophene Ax20017 Length = 681

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 14/83 (16%)
Query: 100 VIRLIDHF-KHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKY---ILTG 155
           +   ++H  +H  P G    +V+E++G   L+     R KG +L  V E   Y   IL  
Sbjct: 144 IFNFVEHTDRHGDPVGY---IVMEYVGGQSLK-----RSKGQKL-PVAEAIAYLLEILPA 194
Query: 156 LDYLHRELGIIHTDLKPENILLV 178
           L YLH  +G+++ DLKPENI+L 
Sbjct: 195 LSYLH-SIGLVYNDLKPENIMLT 216

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	447
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	1e-156
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	1e-100
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	2e-95
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	1e-94
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	8e-70
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	9e-69
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	6e-48
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	2e-42
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	5e-47
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	9e-43
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	1e-32
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	3e-26
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	5e-10
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	8e-26
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	1e-09
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	4e-25
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	1e-09
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	3e-23
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	2e-07
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	5e-23
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	1e-15
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	9e-23
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	2e-15
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	9e-22
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	4e-15
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	1e-21
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	1e-11
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	2e-21
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	2e-12
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	8e-21
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	3e-09
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	2e-20
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	4e-13
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	3e-20
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	2e-11
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	3e-20
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	9e-11
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	4e-20
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	4e-16
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	4e-20
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	1e-14
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	5e-20
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	5e-10
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	5e-20
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	1e-13
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	5e-20
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	6e-08
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	7e-20
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	3e-13
2a19_B	284	Interferon-induced, double-stranded RNA-activated	9e-20
2a19_B	284	Interferon-induced, double-stranded RNA-activated	8e-13
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	1e-19
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	4e-15
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	1e-19
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	1e-05
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	1e-19
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	2e-18
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	2e-19
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	2e-10
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	2e-19
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	5e-05
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	3e-04
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	2e-19
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	1e-10
3bhy_A	283	Death-associated protein kinase 3; death associate	3e-19
3bhy_A	283	Death-associated protein kinase 3; death associate	2e-06
3bhy_A	283	Death-associated protein kinase 3; death associate	8e-05
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	3e-19
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	5e-16
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	4e-19
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	3e-13
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	4e-19
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	1e-14
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	6e-19
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	4e-05
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	5e-05
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	6e-19
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	3e-14
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	7e-19
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	3e-04
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	8e-19
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	1e-09
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	1e-18
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	6e-05
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	2e-18
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	4e-14
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	2e-18
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	8e-06
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	4e-05
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	2e-18
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	1e-15
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	2e-18
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	2e-13
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	2e-18
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	1e-04
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	2e-04
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	2e-18
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	8e-07
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	2e-05
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	3e-18
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-06
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-05
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	3e-18
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	4e-18
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	3e-18
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	2e-06
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	4e-05
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	3e-18
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	9e-07
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	1e-04
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	4e-18
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	6e-05
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	4e-04
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	4e-18
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	8e-14
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	5e-18
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	6e-18
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	2e-06
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	6e-05
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	9e-18
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	9e-12
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	9e-18
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	4e-04
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	7e-04
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	9e-18
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	8e-04
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	1e-17
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	3e-06
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	7e-05
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	1e-17
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	9e-14
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	1e-17
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	5e-04
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	8e-04
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	1e-17
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	1e-05
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	5e-04
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	2e-17
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	9e-09
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	2e-17
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	2e-13
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	2e-17
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	5e-05
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	9e-05
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	2e-17
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	3e-06
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	2e-17
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	1e-13
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	2e-17
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	3e-11
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	2e-17
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	3e-17
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	3e-12
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	3e-17
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	4e-10
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	3e-17
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	4e-10
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	3e-17
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	1e-06
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	4e-05
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	3e-17
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	7e-06
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	9e-05
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	4e-17
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	1e-05
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	2e-04
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	4e-17
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	2e-05
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	2e-04
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	4e-17
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	6e-11
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	4e-17
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	4e-04
3aln_A	327	Dual specificity mitogen-activated protein kinase;	5e-17
3aln_A	327	Dual specificity mitogen-activated protein kinase;	7e-08
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	5e-17
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	3e-15
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	6e-17
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	6e-17
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	4e-06
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	1e-16
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	1e-16
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	8e-05
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	3e-04
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	2e-16
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	3e-04
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	2e-16
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	2e-05
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	2e-16
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	8e-14
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	2e-16
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	2e-09
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	2e-16
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	2e-11
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	3e-16
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	2e-04
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	3e-16
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	5e-14
3fme_A	290	Dual specificity mitogen-activated protein kinase;	3e-16
3fme_A	290	Dual specificity mitogen-activated protein kinase;	4e-06
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	3e-16
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	4e-16
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	4e-09
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	5e-16
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	1e-15
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	6e-16
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	2e-12
2dyl_A	318	Dual specificity mitogen-activated protein kinase	6e-16
2dyl_A	318	Dual specificity mitogen-activated protein kinase	9e-09
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	8e-16
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	1e-09
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	9e-16
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	2e-04
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	8e-04
3rp9_A	458	Mitogen-activated protein kinase; structural genom	1e-15
3rp9_A	458	Mitogen-activated protein kinase; structural genom	1e-15
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	1e-15
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	2e-10
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	2e-15
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	9e-14
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	2e-15
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	4e-15
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	2e-15
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	4e-15
3niz_A	311	Rhodanese family protein; structural genomics, str	3e-15
3niz_A	311	Rhodanese family protein; structural genomics, str	2e-12
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	3e-15
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	2e-08
3an0_A	340	Dual specificity mitogen-activated protein kinase;	3e-15
3an0_A	340	Dual specificity mitogen-activated protein kinase;	4e-05
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	4e-15
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	1e-12
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	6e-15
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	6e-15
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	8e-15
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	1e-12
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	9e-15
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	6e-09
3o0g_A	292	Cell division protein kinase 5; kinase activator c	9e-15
3o0g_A	292	Cell division protein kinase 5; kinase activator c	1e-13
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	1e-14
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	6e-13
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	1e-14
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	1e-12
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	1e-14
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	3e-13
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	2e-14
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	1e-09
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	2e-14
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	5e-12
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	3e-14
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	2e-09
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	3e-14
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	8e-07
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	3e-14
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	2e-10
3uqc_A	286	Probable conserved transmembrane protein; structur	4e-14
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	7e-14
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	1e-05
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	7e-14
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	7e-14
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	8e-14
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	1e-13
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	4e-04
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	1e-13
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	3e-10
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	1e-13
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	3e-06
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	2e-13
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	1e-04
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	2e-13
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	7e-06
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	3e-13
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	1e-05
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	3e-13
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	9e-05
3ork_A	311	Serine/threonine protein kinase; structural genomi	4e-13
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	6e-13
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	1e-07
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	7e-13
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	2e-04
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	7e-13
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	6e-06
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	9e-13
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	3e-07
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	1e-12
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	1e-12
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	3e-05
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	1e-12
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	2e-12
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	5e-04
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	2e-12
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	7e-07
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	4e-12
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	5e-08
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	4e-12
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	6e-05
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	6e-12
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	2e-04
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	6e-12
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	4e-05
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	1e-11
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	7e-11
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	1e-11
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	9e-11
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	2e-11
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	9e-07
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	2e-11
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	5e-11
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	1e-10
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	5e-09
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	3e-10
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	2e-07
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	4e-10
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	2e-04
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	6e-10
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	7e-05
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	1e-09
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	6e-05
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	1e-09
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	2e-09
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	2e-04
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	2e-09
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	2e-04
3q4u_A	301	Activin receptor type-1; structural genomics conso	2e-09
3q4u_A	301	Activin receptor type-1; structural genomics conso	1e-05
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	2e-09
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	2e-06
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	3e-09
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	5e-09
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	5e-09
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	3e-06
3soc_A	322	Activin receptor type-2A; structural genomics cons	8e-09
3soc_A	322	Activin receptor type-2A; structural genomics cons	1e-04
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	9e-09
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	4e-04
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	3e-08
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	7e-07
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	3e-08
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	2e-07
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	5e-08
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	7e-05
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	7e-08
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	8e-05
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	7e-08
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	2e-04
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	1e-07
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	9e-05
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	1e-07
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	3e-05
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	1e-07
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	2e-05
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	1e-07
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	1e-06
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	1e-07
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	2e-05
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	1e-07
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	2e-07
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	9e-07
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	2e-07
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	5e-06
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	2e-07
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	2e-07
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	2e-04
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	3e-07
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	3e-07
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	4e-07
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	7e-07
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	7e-07
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	1e-06
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	1e-06
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	2e-06
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	4e-06
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	5e-06
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	6e-06
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	3e-05
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	4e-05
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	5e-05
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	7e-05
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	1e-04
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	1e-04
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	1e-04
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	2e-04
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	2e-04
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	3e-04
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	5e-04
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	6e-04
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	7e-04
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	7e-04
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	9e-04

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score =  447 bits (1150), Expect = e-156
 Identities = 179/410 (43%), Positives = 252/410 (61%), Gaps = 26/410 (6%)

Query: 9   SEDDDEGIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI 68
            +D+ E  + Y KGGYH V++GDLFNG RY   RKLGWG FS VWL++D +   +VA+K+
Sbjct: 11  DDDEQEDPNDYCKGGYHLVKIGDLFNG-RYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKV 69

Query: 69  QKSAAQFAQAALHEIEVLSAVADGDPSNE--KCVIRLIDHFKHAGPNGQHLCMVLEFLGD 126
            KSA  + + AL EI +L +V + DP++   + V++L+D FK +G NG H+CMV E LG 
Sbjct: 70  VKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGH 129

Query: 127 SLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKD 186
            LL+ I  S Y+GL L  V++I + +L GLDYLH +  IIHTD+KPENILL         
Sbjct: 130 HLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSV------- 182

Query: 187 PIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPER 246
                        E  I   +              +  AV+       +        P  
Sbjct: 183 ------------NEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFL----VNPLE 226

Query: 247 CLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFEL 306
             +   ++ K+ D GNAC  +K F E+IQTRQYR+ EV++ +GY+   D+WS AC AFEL
Sbjct: 227 PKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFEL 286

Query: 307 ATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLK 366
           ATGD LF P SG+ +  DEDH+AL++EL+GK+PRK+ + G  SK++F + GDLK I +LK
Sbjct: 287 ATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLK 346

Query: 367 FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
            W L  +LV+KY +S+ +A  F +FL+P+L+  PEKR TA +CL+HPWL+
Sbjct: 347 PWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPWLN 396

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score =  302 bits (775), Expect = e-100
 Identities = 105/416 (25%), Positives = 167/416 (40%), Gaps = 72/416 (17%)

Query: 4   SSSSGSEDDDEGIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSY 63
            +     DD+          + + + G L N   ++  RK+G G F  V L        Y
Sbjct: 12  ENLYFQGDDEIV--------HFSWKKGMLLNN-AFLVIRKMGDGTFGRVLLCQHIDNKKY 62

Query: 64  VALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEF 123
            A+K+ ++  ++ ++A  E ++L  + + D +N   V +    F +      H+C++ E 
Sbjct: 63  YAVKVVRNIKKYTRSAKIEADILKKIQNDDINNNNIV-KYHGKFMYYD----HMCLIFEP 117

Query: 124 LGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP 183
           LG SL  +I  + Y G  +  ++  C  IL  L+YL  ++ + HTDLKPENILL      
Sbjct: 118 LGPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLR-KMSLTHTDLKPENILLDD---- 172

Query: 184 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPK 243
                          P    +  +   +T  +K    R K                    
Sbjct: 173 ---------------PYFEKSLITVRRVTDGKKIQIYRTKST------------------ 199

Query: 244 PERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTA 303
                       K++DFG A   +      I TRQYRAPEVIL  G+  S DMWSF C  
Sbjct: 200 ----------GIKLIDFGCATFKSDYHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVL 249

Query: 304 FELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK-IAIGGAQSKDYFDRHGDLKRI 362
            EL TG +LF            +HLA+M  +I  +P+  +      +   +    +LK  
Sbjct: 250 AELYTGSLLFRTHE------HMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLA 303

Query: 363 RRLKFWSLDRLLVDKYRFSETDA---REFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
                 S++ +   K             F +FL  +L   P  RP+  + L+H +L
Sbjct: 304 WPENASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQIDPTLRPSPAELLKHKFL 359

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* Length = 339

 Score =  289 bits (742), Expect = 2e-95
 Identities = 104/404 (25%), Positives = 170/404 (42%), Gaps = 80/404 (19%)

Query: 23  GYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSS-YVALKIQKSAAQFAQAALH 81
            +   + GD+ +  RY     LG G F  V    D +    +VA+KI K+  ++ +AA  
Sbjct: 2   MHLICQSGDVLSA-RYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARS 60

Query: 82  EIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLE 141
           EI+VL  +   DP++    +++++ F+H G    H+C+V E LG S    IK + +    
Sbjct: 61  EIQVLEHLNTTDPNSTFRCVQMLEWFEHHG----HICIVFELLGLSTYDFIKENGFLPFR 116

Query: 142 LNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEG 201
           L+ +R++   I   +++LH    + HTDLKPENIL V                       
Sbjct: 117 LDHIRKMAYQICKSVNFLH-SNKLTHTDLKPENILFVQ---------------------- 153

Query: 202 SINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFG 261
                  S  T       +R +R + N  I                        KVVDFG
Sbjct: 154 -------SDYTEAYNPKIKRDERTLINPDI------------------------KVVDFG 182

Query: 262 NACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGF 321
           +A   ++  +  + TR YRAPEVIL  G+S   D+WS  C   E   G  +F        
Sbjct: 183 SATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVF-----PTH 237

Query: 322 CEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDL--------KRIRRLKFWSLDRL 373
              E HLA+M  ++G +P+ +     + K +     D            R  K   L   
Sbjct: 238 DSKE-HLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACK--PLKEF 294

Query: 374 LVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 417
           ++ +    + +     + +  +L++ P KR T ++ L+HP+  L
Sbjct: 295 MLSQ----DVEHERLFDLIQKMLEYDPAKRITLREALKHPFFDL 334

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score =  288 bits (738), Expect = 1e-94
 Identities = 109/411 (26%), Positives = 166/411 (40%), Gaps = 78/411 (18%)

Query: 10  EDDDEGIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDT-RTSSYVALKI 68
           EDD EG        +   R+GD     RY     LG G F  V    D  R  S VALKI
Sbjct: 2   EDDKEG--------HLVCRIGDWLQE-RYEIVGNLGEGTFGKVVECLDHARGKSQVALKI 52

Query: 69  QKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSL 128
            ++  ++ +AA  EI VL  + + D  N+   + + D F   G    H+C+  E LG + 
Sbjct: 53  IRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHG----HMCIAFELLGKNT 108

Query: 129 LRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI 188
              +K + ++   L  VR +   +   L +LH E  + HTDLKPENIL V+         
Sbjct: 109 FEFLKENNFQPYPLPHVRHMAYQLCHALRFLH-ENQLTHTDLKPENILFVN--------- 158

Query: 189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCL 248
                               S    +  + K   +++V N SI                 
Sbjct: 159 --------------------SEFETLYNEHKSCEEKSVKNTSI----------------- 181

Query: 249 DGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 308
                  +V DFG+A   ++     + TR YR PEVIL  G++   D+WS  C  FE   
Sbjct: 182 -------RVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYR 234

Query: 309 GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG---DLKRIRRL 365
           G  LF     Q     E HL +M +++G +P  + I   + + YF + G   D       
Sbjct: 235 GFTLF-----QTHENRE-HLVMMEKILGPIPSHM-IHRTRKQKYFYKGGLVWDENSSDGR 287

Query: 366 KFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
                 + L         +  +  + +  +L+F P +R T  + L HP+ +
Sbjct: 288 YVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALLHPFFA 338

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score =  224 bits (574), Expect = 8e-70
 Identities = 80/174 (45%), Positives = 109/174 (62%), Gaps = 5/174 (2%)

Query: 19  YRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQA 78
           YR GGYH    G+ +   RYI  RKLGWG FS VWLA D   +++VA+KI +    + +A
Sbjct: 2   YRPGGYHPAFKGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEA 61

Query: 79  ALHEIEVLSAVADGDPSNE-----KCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIK 133
           A  EI++L  V D D + E       +++L+DHF H GPNG H+ MV E LG++LL LIK
Sbjct: 62  AEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIK 121

Query: 134 YSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP 187
              ++G+ L  V++I K +L GLDY+HR  GIIHTD+KPEN+L+     P    
Sbjct: 122 KYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLI 175

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score =  222 bits (567), Expect = 9e-69
 Identities = 74/195 (37%), Positives = 112/195 (57%), Gaps = 6/195 (3%)

Query: 243 KPERCLDGIDMRC------KVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDM 296
           KPE  L  I          K+ D GNAC  ++ +   IQTR+YR+PEV+L A +    D+
Sbjct: 159 KPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADI 218

Query: 297 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 356
           WS AC  FEL TGD LF P  G  + +D+DH+A ++EL+G++P  +   G  ++ +F+  
Sbjct: 219 WSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSR 278

Query: 357 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
           G L+ I +LKFW L+ +L +KY+FS+ +A+E ++FL P+L   P KR  A   + HPWL 
Sbjct: 279 GLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLK 338

Query: 417 LRNSTRDETKNKSNV 431
                 +       +
Sbjct: 339 DTLGMEEIRVPDREL 353

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score =  167 bits (426), Expect = 6e-48
 Identities = 58/180 (32%), Positives = 87/180 (48%), Gaps = 17/180 (9%)

Query: 11  DDDEGIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQK 70
           DDD           + V+ G+ +   RY     +G G F  V  AYD     +VA+KI K
Sbjct: 38  DDDNY--------DYIVKNGEKWMD-RYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIK 88

Query: 71  SAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLR 130
           +   F   A  E+ +L  +   D   +  ++ L  HF        HLC+V E L  +L  
Sbjct: 89  NKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRN----HLCLVFEMLSYNLYD 144

Query: 131 LIKYSRYKGLELNKVREICKYILTGLDYLHR-ELGIIHTDLKPENILLVSTIDPSKDPIR 189
           L++ + ++G+ LN  R+  + + T L +L   EL IIH DLKPENILL    +P +  I+
Sbjct: 145 LLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLC---NPKRSAIK 201

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score =  153 bits (388), Expect = 2e-42
 Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 30/200 (15%)

Query: 243 KPERCL--DGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KPE  L  +      K+VDFG++C+  ++  + IQ+R YR+PEV+L   Y  ++DMWS  
Sbjct: 186 KPENILLCNPKRSAIKIVDFGSSCQLGQRIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLG 245

Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDL- 359
           C   E+ TG+ LF      G  E  D +  ++E++G  P  I     +++ +F++  D  
Sbjct: 246 CILVEMHTGEPLF-----SGANE-VDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPDGT 299

Query: 360 ----------KRIRRLKFWSLDRLLVDKYRFS-----------ETDAREFAEFLVPLLDF 398
                     +  +      L  +L  +                 D  +F + ++ +LD+
Sbjct: 300 WNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDY 359

Query: 399 TPEKRPTAQQCLQHPWLSLR 418
            P+ R      LQH +    
Sbjct: 360 DPKTRIQPYYALQHSFFKKT 379

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score =  166 bits (422), Expect = 5e-47
 Identities = 62/179 (34%), Positives = 88/179 (49%), Gaps = 17/179 (9%)

Query: 11  DDDEGIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQK 70
           DDD+G  SY           D     RY   + +G G F  V  AYD +   +VALK+ +
Sbjct: 81  DDDQG--SYV------QVPHDHV-AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVR 131

Query: 71  SAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLR 130
           +  +F + A  EI +L  +   D  N   VI ++++F        H+CM  E L  +L  
Sbjct: 132 NEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRN----HICMTFELLSMNLYE 187

Query: 131 LIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR 189
           LIK ++++G  L  VR+    IL  LD LH+   IIH DLKPENILL       +  I+
Sbjct: 188 LIKKNKFQGFSLPLVRKFAHSILQCLDALHK-NRIIHCDLKPENILLK---QQGRSGIK 242

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score =  155 bits (393), Expect = 9e-43
 Identities = 66/212 (31%), Positives = 95/212 (44%), Gaps = 30/212 (14%)

Query: 243 KPERCL--DGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KPE  L         KV+DFG++C  +++    IQ+R YRAPEVIL A Y   +DMWS  
Sbjct: 227 KPENILLKQQGRSGIKVIDFGSSCYEHQRVYTYIQSRFYRAPEVILGARYGMPIDMWSLG 286

Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
           C   EL TG  L       G  E  D LA M+EL+G   +K+     ++K++    G  +
Sbjct: 287 CILAELLTGYPLL-----PGEDE-GDQLACMIELLGMPSQKLLDASKRAKNFVSSKGYPR 340

Query: 361 -------------------RIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPE 401
                              R  +L+     R   +       D   F +FL   L++ P 
Sbjct: 341 YCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGN--ALKGCDDPLFLDFLKQCLEWDPA 398

Query: 402 KRPTAQQCLQHPWLSLRNSTRDETKNKSNVEK 433
            R T  Q L+HPWL  R   +  T  K++V++
Sbjct: 399 VRMTPGQALRHPWLR-RRLPKPPTGEKTSVKR 429

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score =  124 bits (313), Expect = 1e-32
 Identities = 67/386 (17%), Positives = 115/386 (29%), Gaps = 121/386 (31%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADGD 93
            +    K+G G+F  V+           A+K      + +   Q AL E+   + +  G 
Sbjct: 12  EFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVL--GQ 69

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLEL--NKVREICK 150
            S+   V+R    +        H+ +  E+  G SL   I  +          +++++  
Sbjct: 70  HSH---VVRYFSAWAE----DDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLL 122

Query: 151 YILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTST 210
            +  GL Y+H  + ++H D+KP NI +                          N  S   
Sbjct: 123 QVGRGLRYIH-SMSLVHMDIKPSNIFI--------------------SRTSIPNAASEEG 161

Query: 211 MTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF 270
                   K   K                                   D G+  R +   
Sbjct: 162 DEDDWASNKVMFKIG---------------------------------DLGHVTRISSPQ 188

Query: 271 AEEIQTRQYRAPEVIL-RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLA 329
            EE    ++ A EV+     +    D+++ A T    A  + L                 
Sbjct: 189 VEE-GDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRN-------------- 233

Query: 330 LMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFA 389
                 G    +I            R G L RI +                S+    EF 
Sbjct: 234 ------GDQWHEI------------RQGRLPRIPQ--------------VLSQ----EFT 257

Query: 390 EFLVPLLDFTPEKRPTAQQCLQHPWL 415
           E L  ++   PE+RP+A   ++H  L
Sbjct: 258 ELLKVMIHPDPERRPSAMALVKHSVL 283

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score =  107 bits (268), Expect = 3e-26
 Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 15/148 (10%)

Query: 34  NGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI---QKSAAQFAQAALHEIEVLSAVA 90
            G  Y   +++G G  S V+   +       A+K    +++  Q   +  +EI  L+ + 
Sbjct: 26  KGRIYSILKQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQ 84

Query: 91  DGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICK 150
                +   +IRL D+        Q++ MV+E     L   +K  + K ++  + +   K
Sbjct: 85  Q----HSDKIIRLYDYEI----TDQYIYMVMECGNIDLNSWLK--KKKSIDPWERKSYWK 134

Query: 151 YILTGLDYLHRELGIIHTDLKPENILLV 178
            +L  +  +H+  GI+H+DLKP N L+V
Sbjct: 135 NMLEAVHTIHQH-GIVHSDLKPANFLIV 161

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 59.6 bits (145), Expect = 5e-10
 Identities = 32/206 (15%), Positives = 67/206 (32%), Gaps = 62/206 (30%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ-----YRAPEVIL----------- 286
           KP   L  +D   K++DFG A +        ++  Q     Y  PE I            
Sbjct: 154 KPANFLI-VDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKS 212

Query: 287 RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG 346
           ++  S   D+WS  C  + +  G     P     F +  + ++ +  +I           
Sbjct: 213 KSKISPKSDVWSLGCILYYMTYG---KTP-----FQQIINQISKLHAII----------- 253

Query: 347 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA 406
               ++                        +  F +   ++  + L   L   P++R + 
Sbjct: 254 --DPNH------------------------EIEFPDIPEKDLQDVLKCCLKRDPKQRISI 287

Query: 407 QQCLQHPWLSLRNSTRDETKNKSNVE 432
            + L HP++ ++    ++    +  E
Sbjct: 288 PELLAHPYVQIQTHPVNQMAKGTTEE 313

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score =  106 bits (267), Expect = 8e-26
 Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 15/148 (10%)

Query: 34  NGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI---QKSAAQFAQAALHEIEVLSAVA 90
            G  Y   +++G G  S V+   +       A+K    +++  Q   +  +EI  L+ + 
Sbjct: 7   KGRIYSILKQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQ 65

Query: 91  DGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICK 150
                    +IRL D+        Q++ MV+E     L   +K  + K ++  + +   K
Sbjct: 66  QHSD----KIIRLYDYEI----TDQYIYMVMECGNIDLNSWLK--KKKSIDPWERKSYWK 115

Query: 151 YILTGLDYLHRELGIIHTDLKPENILLV 178
            +L  +  +H+  GI+H+DLKP N L+V
Sbjct: 116 NMLEAVHTIHQH-GIVHSDLKPANFLIV 142

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 31/203 (15%), Positives = 66/203 (32%), Gaps = 62/203 (30%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ-----YRAPEVIL----------- 286
           KP   L  +D   K++DFG A +        ++  Q     Y  PE I            
Sbjct: 135 KPANFLI-VDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKS 193

Query: 287 RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG 346
           ++  S   D+WS  C  + +  G     P     F +  + ++ +  +I           
Sbjct: 194 KSKISPKSDVWSLGCILYYMTYG---KTP-----FQQIINQISKLHAII----------- 234

Query: 347 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA 406
               ++                        +  F +   ++  + L   L   P++R + 
Sbjct: 235 --DPNH------------------------EIEFPDIPEKDLQDVLKCCLKRDPKQRISI 268

Query: 407 QQCLQHPWLSLRNSTRDETKNKS 429
            + L HP++ ++    ++    +
Sbjct: 269 PELLAHPYVQIQTHPVNQMAKGT 291

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score =  105 bits (263), Expect = 4e-25
 Identities = 36/149 (24%), Positives = 68/149 (45%), Gaps = 15/149 (10%)

Query: 34  NGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI---QKSAAQFAQAALHEIEVLSAVA 90
            G  Y   +++G G  S V+   +       A+K    +++  Q   +  +EI  L+ + 
Sbjct: 54  KGRIYSILKQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQ 112

Query: 91  DGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICK 150
                +   +IRL D+        Q++ MV+E     L   +K  + K ++  + +   K
Sbjct: 113 Q----HSDKIIRLYDYEI----TDQYIYMVMECGNIDLNSWLK--KKKSIDPWERKSYWK 162

Query: 151 YILTGLDYLHRELGIIHTDLKPENILLVS 179
            +L  +  +H+  GI+H+DLKP N L+V 
Sbjct: 163 NMLEAVHTIHQH-GIVHSDLKPANFLIVD 190

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 58.7 bits (142), Expect = 1e-09
 Identities = 31/203 (15%), Positives = 60/203 (29%), Gaps = 62/203 (30%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ-----YRAPEVIL----------- 286
           KP   L  +D   K++DFG A +        ++  Q     Y  PE I            
Sbjct: 182 KPANFLI-VDGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKS 240

Query: 287 RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG 346
           ++  S   D+WS  C  + +  G   F              +   +              
Sbjct: 241 KSKISPKSDVWSLGCILYYMTYGKTPF------------QQIINQISK------------ 276

Query: 347 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA 406
                       L  I              +  F +   ++  + L   L   P++R + 
Sbjct: 277 ------------LHAIIDPNH---------EIEFPDIPEKDLQDVLKCCLKRDPKQRISI 315

Query: 407 QQCLQHPWLSLRNSTRDETKNKS 429
            + L HP++ ++    ++    +
Sbjct: 316 PELLAHPYVQIQTHPVNQMAKGT 338

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 99.0 bits (247), Expect = 3e-23
 Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 11/148 (7%)

Query: 34  NGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADG 92
           +   Y+  +KLG G FS V L        + ALK I     Q  + A  E ++       
Sbjct: 27  DNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLF--- 83

Query: 93  DPSNEKCVIRLIDHFKHAGPNGQHLCMVLEF-LGDSLLRLIKYSRYKG--LELNKVREIC 149
              N   ++RL+ +            ++L F    +L   I+  + KG  L  +++  + 
Sbjct: 84  ---NHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLL 140

Query: 150 KYILTGLDYLHRELGIIHTDLKPENILL 177
             I  GL+ +H   G  H DLKP NILL
Sbjct: 141 LGICRGLEAIH-AKGYAHRDLKPTNILL 167

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 27/189 (14%), Positives = 50/189 (26%), Gaps = 64/189 (33%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFA---------EEIQ---TRQYRAPEVI---LR 287
           KP   L G + +  ++D G+  +A              +      T  YRAPE+      
Sbjct: 161 KPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSH 220

Query: 288 AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA 347
                  D+WS  C  + +                             G+ P        
Sbjct: 221 CVIDERTDVWSLGCVLYAMMF---------------------------GEGP-------- 245

Query: 348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDA--REFAEFLVPLLDFTPEKRPT 405
                +D           K  S+   + ++    ++        + L  ++   P +RP 
Sbjct: 246 -----YDMVF-------QKGDSVALAVQNQLSIPQSPRHSSALWQLLNSMMTVDPHQRPH 293

Query: 406 AQQCLQHPW 414
               L    
Sbjct: 294 IPLLLSQLE 302

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score =   99 bits (249), Expect = 5e-23
 Identities = 51/188 (27%), Positives = 78/188 (41%), Gaps = 16/188 (8%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFA--EEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 191 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 250

Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK--DYFDRHGD 358
           C   E+    +LF  +         D    ++E +G  P    +   Q    +Y +    
Sbjct: 251 CIMGEMVRHKILFPGRDYI------DQWNKVIEQLGT-PCPEFMKKLQPTVRNYVEN--- 300

Query: 359 LKRIRRLKFWSL--DRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
             +   L F  L  D L       ++  A +  + L  +L   P KR +    LQHP+++
Sbjct: 301 RPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYIN 360

Query: 417 LRNSTRDE 424
           +     + 
Sbjct: 361 VWYDPAEV 368

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 77.6 bits (191), Expect = 1e-15
 Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 18/164 (10%)

Query: 21  KGGYHAVRVGD-LFN-GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQK--SAAQF 75
              +++V VGD  F    RY   + +G G   IV  AYD      VA+K + +       
Sbjct: 45  DNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTH 104

Query: 76  AQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP--NGQHLCMVLEFLGDSLLRLIK 133
           A+ A  E+ ++  V      N K +I L++ F         Q + +V+E +  +L ++I+
Sbjct: 105 AKRAYRELVLMKCV------NHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQ 158

Query: 134 YSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
                 L+  ++  +   +L G+ +LH   GIIH DLKP NI++
Sbjct: 159 ----MELDHERMSYLLYQMLCGIKHLH-SAGIIHRDLKPSNIVV 197

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 98.2 bits (245), Expect = 9e-23
 Identities = 50/188 (26%), Positives = 76/188 (40%), Gaps = 16/188 (8%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFA--EEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 154 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 213

Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK--DYFDRHGD 358
           C   E+  G +LF            D    ++E +G  P    +   Q     Y +    
Sbjct: 214 CIMGEMIKGGVLFPGTDHI------DQWNKVIEQLGT-PCPEFMKKLQPTVRTYVEN--- 263

Query: 359 LKRIRRLKFWSL--DRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
             +     F  L  D L       ++  A +  + L  +L     KR +  + LQHP+++
Sbjct: 264 RPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYIN 323

Query: 417 LRNSTRDE 424
           +     + 
Sbjct: 324 VWYDPSEA 331

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 76.3 bits (188), Expect = 2e-15
 Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 18/168 (10%)

Query: 17  DSYRKGGYHAVRVGD-LFN-GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQK--S 71
            S R   +++V +GD  F    RY   + +G G   IV  AYD      VA+K + +   
Sbjct: 4   RSKRDNNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQ 63

Query: 72  AAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG--QHLCMVLEFLGDSLL 129
               A+ A  E+ ++  V      N K +I L++ F         Q + +V+E +  +L 
Sbjct: 64  NQTHAKRAYRELVLMKCV------NHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLC 117

Query: 130 RLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
           ++I+      L+  ++  +   +L G+ +LH   GIIH DLKP NI++
Sbjct: 118 QVIQ----MELDHERMSYLLYQMLCGIKHLHSA-GIIHRDLKPSNIVV 160

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 94.4 bits (235), Expect = 9e-22
 Identities = 35/153 (22%), Positives = 67/153 (43%), Gaps = 13/153 (8%)

Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI--QKSAAQFAQAALHEIEVLSAVADGD 93
             ++    LG G  + V+     +T    A+K+    S  +     + E EVL  +    
Sbjct: 9   HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKL---- 64

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKY 151
             N K +++L    +      +H  +++EF   G     L + S   GL  ++   + + 
Sbjct: 65  --NHKNIVKLFAIEE--ETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRD 120

Query: 152 ILTGLDYLHRELGIIHTDLKPENILLVSTIDPS 184
           ++ G+++L  E GI+H ++KP NI+ V   D  
Sbjct: 121 VVGGMNHLR-ENGIVHRNIKPGNIMRVIGEDGQ 152

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 74.8 bits (184), Expect = 4e-15
 Identities = 41/190 (21%), Positives = 60/190 (31%), Gaps = 35/190 (18%)

Query: 243 KPE-----RCLDGIDMRCKVVDFG--NACRANKQFAEEIQTRQYRAPEVILRA------- 288
           KP         DG     K+ DFG       ++QF     T +Y  P++  RA       
Sbjct: 139 KPGNIMRVIGEDG-QSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQ 197

Query: 289 -GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA 347
             Y  +VD+WS   T +  ATG + F P  G        +  +M ++I   P      GA
Sbjct: 198 KKYGATVDLWSIGVTFYHAATGSLPFRPFEG-----PRRNKEVMYKIITGKPS-----GA 247

Query: 348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQ 407
            S      +G +     +               S          L  +L+   EK     
Sbjct: 248 ISGVQKAENGPIDWSGDMPVSC---------SLSRGLQVLLTPVLANILEADQEKCWGFD 298

Query: 408 QCLQHPWLSL 417
           Q        L
Sbjct: 299 QFFAETSDIL 308

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 95.6 bits (238), Expect = 1e-21
 Identities = 51/237 (21%), Positives = 80/237 (33%), Gaps = 38/237 (16%)

Query: 1   MSCSSSSGSEDDDEGIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRT 60
           M  S S   +D DE       G               +  +  LG G    +        
Sbjct: 1   MGSSPSLEQDDGDEETSVVIVGKI------------SFCPKDVLGHGAEGTIVYR-GMFD 47

Query: 61  SSYVALK-IQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCM 119
           +  VA+K I     +    A  E+++L    D  P+    VIR     K    + Q   +
Sbjct: 48  NRDVAVKRILP---ECFSFADREVQLLRES-DEHPN----VIRYFCTEK----DRQFQYI 95

Query: 120 VLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVS 179
            +E    +L   ++   +  L L +   + +   +GL +LH  L I+H DLKP NIL+  
Sbjct: 96  AIELCAATLQEYVEQKDFAHLGL-EPITLLQQTTSGLAHLH-SLNIVHRDLKPHNILISM 153

Query: 180 TIDPSKDPIRS---GLTPILERPEGSINGGSTSTMT-------IVEKKLKRRAKRAV 226
                K        GL   L     S +  S    T       ++ +  K      V
Sbjct: 154 PNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTV 210

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 31/188 (16%), Positives = 63/188 (33%), Gaps = 60/188 (31%)

Query: 243 KPERCL-----DGIDMRCKVVDFGNACR------ANKQFAEEIQTRQYRAPEVI---LRA 288
           KP   L         ++  + DFG   +      +  + +    T  + APE++    + 
Sbjct: 145 KPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKE 204

Query: 289 GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ 348
             +++VD++S  C  + + +            F +     A    L+G            
Sbjct: 205 NPTYTVDIFSAGCVFYYVISEGSHP-------FGKSLQRQA--NILLGA----------- 244

Query: 349 SKDYFDRHGDLKRIRRLKFWSLD-RLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQ 407
                     L  +   K   +  R L++K                 ++   P+KRP+A+
Sbjct: 245 --------CSLDCLHPEKHEDVIARELIEK-----------------MIAMDPQKRPSAK 279

Query: 408 QCLQHPWL 415
             L+HP+ 
Sbjct: 280 HVLKHPFF 287

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 94.9 bits (236), Expect = 2e-21
 Identities = 35/153 (22%), Positives = 67/153 (43%), Gaps = 13/153 (8%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI--QKSAAQFAQAALHEIEVLSAVADGDP 94
            ++    LG G  + V+     +T    A+K+    S  +     + E EVL  +     
Sbjct: 10  LWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKL----- 64

Query: 95  SNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYI 152
            N K +++L    +      +H  +++EF   G     L + S   GL  ++   + + +
Sbjct: 65  -NHKNIVKLFAIEE--ETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDV 121

Query: 153 LTGLDYLHRELGIIHTDLKPENILLVSTIDPSK 185
           + G+++L  E GI+H ++KP NI+ V   D   
Sbjct: 122 VGGMNHLR-ENGIVHRNIKPGNIMRVIGEDGQS 153

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 67.2 bits (164), Expect = 2e-12
 Identities = 41/191 (21%), Positives = 60/191 (31%), Gaps = 35/191 (18%)

Query: 243 KPE-----RCLDGIDMRCKVVDFG--NACRANKQFAEEIQTRQYRAPEVILRA------- 288
           KP         DG     K+ DFG       ++QF     T +Y  P++  RA       
Sbjct: 139 KPGNIMRVIGEDG-QSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQ 197

Query: 289 -GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA 347
             Y  +VD+WS   T +  ATG + F P  G        +  +M ++I   P      GA
Sbjct: 198 KKYGATVDLWSIGVTFYHAATGSLPFRPFEGP-----RRNKEVMYKIITGKPS-----GA 247

Query: 348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQ 407
            S      +G +     +               S          L  +L+   EK     
Sbjct: 248 ISGVQKAENGPIDWSGDMPVSC---------SLSRGLQVLLTPVLANILEADQEKCWGFD 298

Query: 408 QCLQHPWLSLR 418
           Q        L 
Sbjct: 299 QFFAETSDILH 309

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 93.2 bits (232), Expect = 8e-21
 Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 26/160 (16%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI---------QKSAAQFAQAALHEIEVLS 87
            YI  + LG G    V LA++ +T   VA++I             A  A     EIE+L 
Sbjct: 136 EYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILK 195

Query: 88  AVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKV 145
            +      N  C+I++ + F     + +   +VLE +  G+   +++   R K  E    
Sbjct: 196 KL------NHPCIIKIKNFF-----DAEDYYIVLELMEGGELFDKVVGNKRLK--E-ATC 241

Query: 146 REICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK 185
           +     +L  + YLH E GIIH DLKPEN+LL S  +   
Sbjct: 242 KLYFYQMLLAVQYLH-ENGIIHRDLKPENVLLSSQEEDCL 280

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 43/192 (22%), Positives = 64/192 (33%), Gaps = 57/192 (29%)

Query: 243 KPERCL---DGIDMRCKVVDFG--NACRANKQFAEEIQTRQYRAPEVI---LRAGYSFSV 294
           KPE  L      D   K+ DFG                T  Y APEV+     AGY+ +V
Sbjct: 266 KPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAV 325

Query: 295 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ-SKDYF 353
           D WS     F   +G   + P     F E    ++L          +I  G      + +
Sbjct: 326 DCWSLGVILFICLSG---YPP-----FSEHRTQVSLK--------DQITSGKYNFIPEVW 369

Query: 354 DRHGDLKR--IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ 411
               +     +++L       L+VD                       P+ R T ++ L+
Sbjct: 370 AEVSEKALDLVKKL-------LVVD-----------------------PKARFTTEEALR 399

Query: 412 HPWLSLRNSTRD 423
           HPWL   +  R 
Sbjct: 400 HPWLQDEDMKRK 411

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 90.8 bits (226), Expect = 2e-20
 Identities = 38/176 (21%), Positives = 61/176 (34%), Gaps = 15/176 (8%)

Query: 5   SSSGSEDDDEGIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYV 64
                    E  ++ +  GY   R    F    +    +LG G +  V+           
Sbjct: 27  QPRRVSFRGEASETLQSPGYDPSRPESFFQQ-SFQRLSRLGHGSYGEVFKVRSKEDGRLY 85

Query: 65  ALKIQKSAAQFA---QAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVL 121
           A+K   S  +        L E+     V         C +RL   ++  G     L +  
Sbjct: 86  AVKRSMSPFRGPKDRARKLAEVGSHEKV-----GQHPCCVRLEQAWEEGG----ILYLQT 136

Query: 122 EFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
           E  G SL +  + +    L   +V    +  L  L +LH   G++H D+KP NI L
Sbjct: 137 ELCGPSLQQHCE-AWGASLPEAQVWGYLRDTLLALAHLH-SQGLVHLDVKPANIFL 190

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 68.9 bits (169), Expect = 4e-13
 Identities = 38/175 (21%), Positives = 59/175 (33%), Gaps = 52/175 (29%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ--TRQYRAPEVILRAGYSFSVDMWSFA 300
           KP     G   RCK+ DFG         A E+Q    +Y APE+ L+  Y  + D++S  
Sbjct: 184 KPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPEL-LQGSYGTAADVFSLG 242

Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
            T  E+A    +  P  G+                                        +
Sbjct: 243 LTILEVACN--MELPHGGE--------------------------------------GWQ 262

Query: 361 RIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
           ++R+               F+   + E    LV +L+  P+ R TA+  L  P L
Sbjct: 263 QLRQGYL---------PPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLALPVL 308

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 90.5 bits (225), Expect = 3e-20
 Identities = 28/145 (19%), Positives = 64/145 (44%), Gaps = 15/145 (10%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADGD 93
           +Y+  +K+G G F    L   T       +K   I + +++  + +  E+ VL+ +    
Sbjct: 25  KYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANM---- 80

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYI 152
                 +++  + F+        L +V+++  G  L + I   +    + +++ +    I
Sbjct: 81  --KHPNIVQYRESFEE----NGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQI 134

Query: 153 LTGLDYLHRELGIIHTDLKPENILL 177
              L ++H +  I+H D+K +NI L
Sbjct: 135 CLALKHVH-DRKILHRDIKSQNIFL 158

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 32/179 (17%), Positives = 53/179 (29%), Gaps = 50/179 (27%)

Query: 243 KPERCLDGIDMRCKVVDFGNAC--RANKQFAEEIQ-TRQYRAPEVILRAGYSFSVDMWSF 299
           K +      D   ++ DFG A    +  + A     T  Y +PE+     Y+   D+W+ 
Sbjct: 152 KSQNIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYYLSPEICENKPYNNKSDIWAL 211

Query: 300 ACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDL 359
            C  +EL T    F   S             M  L+     KI              G  
Sbjct: 212 GCVLYELCTLKHAFEAGS-------------MKNLV----LKI------------ISGSF 242

Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
             +                 +S     +    +  L    P  RP+    L+  +++ R
Sbjct: 243 PPV--------------SLHYSY----DLRSLVSQLFKRNPRDRPSVNSILEKGFIAKR 283

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 89.7 bits (223), Expect = 3e-20
 Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 18/150 (12%)

Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNE 97
           +     LG G F  V  A +   S Y A+K  +   +     L E+ +L+++      N 
Sbjct: 8   FEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASL------NH 61

Query: 98  KCVIRLIDHFKHAGP---------NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVRE 147
           + V+R    +                  L + +E+    +L  LI  S     + ++   
Sbjct: 62  QYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIH-SENLNQQRDEYWR 120

Query: 148 ICKYILTGLDYLHRELGIIHTDLKPENILL 177
           + + IL  L Y+H + GIIH DLKP NI +
Sbjct: 121 LFRQILEALSYIHSQ-GIIHRDLKPMNIFI 149

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 61.6 bits (150), Expect = 9e-11
 Identities = 33/197 (16%), Positives = 57/197 (28%), Gaps = 64/197 (32%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ-----------------TRQYRAPEVI 285
           KP           K+ DFG A   ++                        T  Y A EV+
Sbjct: 143 KPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVL 202

Query: 286 LRAG-YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI 344
              G Y+  +DM+S     FE+              F    + + ++             
Sbjct: 203 DGTGHYNEKIDMYSLGIIFFEMIYP-----------FSTGMERVNIL------------- 238

Query: 345 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP 404
                          K++R +              F +   +   + +  L+D  P KRP
Sbjct: 239 ---------------KKLRSVSI-EFPP------DFDDNKMKVEKKIIRLLIDHDPNKRP 276

Query: 405 TAQQCLQHPWLSLRNST 421
            A+  L   WL +++  
Sbjct: 277 GARTLLNSGWLPVKHQD 293

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 90.4 bits (225), Expect = 4e-20
 Identities = 51/177 (28%), Positives = 75/177 (42%), Gaps = 22/177 (12%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFAC 301
           KP       D   K++DFG A  A+ +    + TR YRAPEVIL    Y+ +VD+WS  C
Sbjct: 153 KPGNLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGC 212

Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              E+ TG  LF  K         D L  ++++ G    +    +    +K Y      L
Sbjct: 213 IMAEMLTGKTLFKGKDYL------DQLTQILKVTGVPGTEFVQKLNDKAAKSYIQS---L 263

Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
            +  R  F  L       +  +   A +    L  +L+   +KR TA Q L HP+  
Sbjct: 264 PQTPRKDFTQL-------FPRASPQAADL---LEKMLELDVDKRLTAAQALTHPFFE 310

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 78.1 bits (193), Expect = 4e-16
 Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 18/165 (10%)

Query: 20  RKGGYHAVRV-GDLFN-GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQK--SAAQ 74
           RK G++   V    +     Y++   +G G +  V  A D R+   VA+K + +   +  
Sbjct: 6   RKKGFYKQDVNKTAWELPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEI 65

Query: 75  FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP--NGQHLCMVLEFLGDSLLRLI 132
           FA+ A  E+ +L  +        + VI L+D F  A    N     +V+ F+   L +++
Sbjct: 66  FAKRAYRELLLLKHM------QHENVIGLLDVFTPASSLRNFYDFYLVMPFMQTDLQKIM 119

Query: 133 KYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
                      K++ +   +L GL Y+H   G++H DLKP N+ +
Sbjct: 120 G----LKFSEEKIQYLVYQMLKGLKYIHSA-GVVHRDLKPGNLAV 159

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 90.5 bits (225), Expect = 4e-20
 Identities = 50/177 (28%), Positives = 76/177 (42%), Gaps = 22/177 (12%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFAC 301
           KP       D   K++DFG A +A+ +    + TR YRAPEVIL    Y+ +VD+WS  C
Sbjct: 155 KPGNLAVNEDCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGC 214

Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              E+ TG  LF            D L  +M++ G  P +    +   ++K+Y      L
Sbjct: 215 IMAEMITGKTLFKGSD------HLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKG---L 265

Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
             + +  F S+          +   A      L  +L    E+R TA + L HP+  
Sbjct: 266 PELEKKDFASI-------LTNASPLAVNL---LEKMLVLDAEQRVTAGEALAHPYFE 312

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 17/165 (10%)

Query: 20  RKGGYHAVRVGD-LFN-GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQK--SAAQ 74
            + G++   V    +     Y   + +G G +  V  A D RT + VA+K + +   +  
Sbjct: 7   ARSGFYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSEL 66

Query: 75  FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP--NGQHLCMVLEFLGDSLLRLI 132
           FA+ A  E+ +L  +        + VI L+D F       +     +V+ F+G  L +L+
Sbjct: 67  FAKRAYRELRLLKHM------RHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLM 120

Query: 133 KYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
           K+ +   L  ++++ +   +L GL Y+H   GIIH DLKP N+ +
Sbjct: 121 KHEK---LGEDRIQFLVYQMLKGLRYIH-AAGIIHRDLKPGNLAV 161

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 91.0 bits (226), Expect = 5e-20
 Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 20/159 (12%)

Query: 35  GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGD 93
               ++++ LG+G    V     +     VA+K +      F   AL EI++L+   D  
Sbjct: 14  KNLVVSEKILGYGSSGTVVFQ-GSFQGRPVAVKRMLI---DFCDIALMEIKLLTES-DDH 68

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVRE-----I 148
           P     VIR            + L + LE    +L  L++        L   +E     +
Sbjct: 69  P----NVIRYYCSETTD----RFLYIALELCNLNLQDLVESKNVSDENLKLQKEYNPISL 120

Query: 149 CKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP 187
            + I +G+ +LH  L IIH DLKP+NIL+ ++   + D 
Sbjct: 121 LRQIASGVAHLH-SLKIIHRDLKPQNILVSTSSRFTADQ 158

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 60.2 bits (146), Expect = 5e-10
 Identities = 35/182 (19%), Positives = 63/182 (34%), Gaps = 64/182 (35%)

Query: 252 DMRCKVVDFGNACRANKQFAEEIQTRQ-----------YRAPEVIL-------RAGYSFS 293
           ++R  + DFG      K+      + +           +RAPE++        +   + S
Sbjct: 164 NLRILISDFGLC----KKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRS 219

Query: 294 VDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF 353
           +D++S  C  + + +                           GK P            + 
Sbjct: 220 IDIFSMGCVFYYILSK--------------------------GKHP------------FG 241

Query: 354 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP 413
           D++     I R  F SLD +   K     +   E  + +  ++D  P KRPTA + L+HP
Sbjct: 242 DKYSRESNIIRGIF-SLDEM---KCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLRHP 297

Query: 414 WL 415
             
Sbjct: 298 LF 299

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 92.1 bits (228), Expect = 5e-20
 Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 13/150 (8%)

Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI--QKSAAQFAQAALHEIEVLSAVADGD 93
           G +  + +LG G F  V       T   VA+K   Q+ + +  +    EI+++  +    
Sbjct: 14  GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKL---- 69

Query: 94  PSNEKCVIRLIDHF--KHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREIC 149
             N   V+   +               + +E+   GD    L ++    GL+   +R + 
Sbjct: 70  --NHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLL 127

Query: 150 KYILTGLDYLHRELGIIHTDLKPENILLVS 179
             I + L YLH E  IIH DLKPENI+L  
Sbjct: 128 SDISSALRYLH-ENRIIHRDLKPENIVLQP 156

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 71.6 bits (175), Expect = 1e-13
 Identities = 41/180 (22%), Positives = 64/180 (35%), Gaps = 29/180 (16%)

Query: 243 KPERCL---DGIDMRCKVVDFG--NACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 297
           KPE  +       +  K++D G        +   E + T QY APE++ +  Y+ +VD W
Sbjct: 148 KPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYW 207

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           SF   AFE  TG   F P     F  +   +    ++  K    I +       Y D  G
Sbjct: 208 SFGTLAFECITG---FRP-----FLPNWQPVQWHGKVREKSNEHIVV-------YDDLTG 252

Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 417
            +K    L   +           S   A +   +L  +L +   +R T  Q         
Sbjct: 253 AVKFSSVLPTPN---------HLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQA 303

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 89.3 bits (222), Expect = 5e-20
 Identities = 48/160 (30%), Positives = 72/160 (45%), Gaps = 26/160 (16%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI---------QKSAAQFAQAALHEIEVLS 87
            YI  + LG G    V LA++ +T   VA+KI             A  A     EIE+L 
Sbjct: 11  EYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILK 70

Query: 88  AVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKV 145
            +      N  C+I++ + F     + +   +VLE +  G+   +++   R K  E    
Sbjct: 71  KL------NHPCIIKIKNFF-----DAEDYYIVLELMEGGELFDKVVGNKRLK--E-ATC 116

Query: 146 REICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK 185
           +     +L  + YLH E GIIH DLKPEN+LL S  +   
Sbjct: 117 KLYFYQMLLAVQYLH-ENGIIHRDLKPENVLLSSQEEDCL 155

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 44/199 (22%), Positives = 65/199 (32%), Gaps = 57/199 (28%)

Query: 243 KPERCL---DGIDMRCKVVDFG--NACRANKQFAEEIQTRQYRAPEVI---LRAGYSFSV 294
           KPE  L      D   K+ DFG                T  Y APEV+     AGY+ +V
Sbjct: 141 KPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAV 200

Query: 295 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ-SKDYF 353
           D WS     F   +G   + P     F E    ++L          +I  G      + +
Sbjct: 201 DCWSLGVILFICLSG---YPP-----FSEHRTQVSLK--------DQITSGKYNFIPEVW 244

Query: 354 DRHGDLKR--IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ 411
               +     +++L       L+VD                       P+ R T ++ L+
Sbjct: 245 AEVSEKALDLVKKL-------LVVD-----------------------PKARFTTEEALR 274

Query: 412 HPWLSLRNSTRDETKNKSN 430
           HPWL   +  R      S 
Sbjct: 275 HPWLQDEDMKRKFQDLLSE 293

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 88.6 bits (220), Expect = 7e-20
 Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 14/148 (9%)

Query: 36  GRYI-AQRKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVAD 91
           GR++    ++G G F  V+   DT T+  VA      +K      Q    E E+L  +  
Sbjct: 25  GRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGL-- 82

Query: 92  GDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICK 150
                   ++R  D ++      + + +V E +   +L   +K  R+K +++  +R  C+
Sbjct: 83  ----QHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLK--RFKVMKIKVLRSWCR 136

Query: 151 YILTGLDYLH-RELGIIHTDLKPENILL 177
            IL GL +LH R   IIH DLK +NI +
Sbjct: 137 QILKGLQFLHTRTPPIIHRDLKCDNIFI 164

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 68.9 bits (169), Expect = 3e-13
 Identities = 25/169 (14%), Positives = 52/169 (30%), Gaps = 47/169 (27%)

Query: 248 LDGIDMRCKVVDFGNACRANKQFAEEIQ-TRQYRAPEVILRAGYSFSVDMWSFACTAFEL 306
           + G     K+ D G A      FA+ +  T ++ APE+     Y  SVD+++F     E+
Sbjct: 164 ITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMY-EEKYDESVDVYAFGMCMLEM 222

Query: 307 ATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLK 366
           AT +  ++         +  + A +   +    +  +                       
Sbjct: 223 ATSEYPYS---------ECQNAAQIYRRVTSGVKPASFDKVAIP---------------- 257

Query: 367 FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
                               E  E +   +    ++R + +  L H + 
Sbjct: 258 --------------------EVKEIIEGCIRQNKDERYSIKDLLNHAFF 286

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 88.1 bits (219), Expect = 9e-20
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 23/154 (14%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN 96
            +     +G G F  V+ A          +K  K      + A  E++ L+ +      +
Sbjct: 12  DFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYN---NEKAEREVKALAKL------D 62

Query: 97  EKCVIRLIDHF------------KHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELN 143
              ++     +              +    + L + +EF    +L + I+  R + L+  
Sbjct: 63  HVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKV 122

Query: 144 KVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
              E+ + I  G+DY+H    +I+ DLKP NI L
Sbjct: 123 LALELFEQITKGVDYIH-SKKLINRDLKPSNIFL 155

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 67.7 bits (166), Expect = 8e-13
 Identities = 26/175 (14%), Positives = 45/175 (25%), Gaps = 54/175 (30%)

Query: 252 DMRCKVVDFGNACRANK--QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATG 309
             + K+ DFG         +      T +Y +PE I    Y   VD+++      EL   
Sbjct: 158 TKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHV 217

Query: 310 DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWS 369
                                                      F+       +R      
Sbjct: 218 ---------------------------------------CDTAFETSKFFTDLRDGIISD 238

Query: 370 LDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE 424
                     F     ++    L  LL   PE RP   + L+   +  ++  ++E
Sbjct: 239 ---------IFD----KKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSPEKNE 280

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 88.9 bits (221), Expect = 1e-19
 Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 22/177 (12%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFAC 301
           KP       D   K++DFG A     +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 159 KPSNLAVNEDCELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 218

Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 359
              EL TG  LF            D L L++ L+G    ++   I    +++Y      L
Sbjct: 219 IMAELLTGRTLFPGTDHI------DQLKLILRLVGTPGAELLKKISSESARNYIQS---L 269

Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
            ++ ++ F ++         F   +     + L  +L    +KR TA Q L H + +
Sbjct: 270 TQMPKMNFANV---------FIGANP-LAVDLLEKMLVLDSDKRITAAQALAHAYFA 316

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 75.4 bits (186), Expect = 4e-15
 Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 17/167 (10%)

Query: 18  SYRKGGYHAVRV-GDLFN-GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ- 74
           S  +  ++   +   ++    RY     +G G +  V  A+DT+T   VA+K      Q 
Sbjct: 9   SQERPTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQS 68

Query: 75  --FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP--NGQHLCMVLEFLGDSLLR 130
              A+    E+ +L  +        + VI L+D F  A        + +V   +G  L  
Sbjct: 69  IIHAKRTYRELRLLKHM------KHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNN 122

Query: 131 LIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
           ++   + + L  + V+ +   IL GL Y+H    IIH DLKP N+ +
Sbjct: 123 IV---KCQKLTDDHVQFLIYQILRGLKYIHSA-DIIHRDLKPSNLAV 165

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 88.7 bits (220), Expect = 1e-19
 Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 12/151 (7%)

Query: 34  NGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADG 92
              R   +R L  G F+ V+ A D  +    ALK +  +  +  +A + E+  +  +   
Sbjct: 26  GELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKL--- 82

Query: 93  DPSNEKCVIRLIDHF---KHAGPNGQHLCMVL-EFLGDSLLRLIKYSRYKG-LELNKVRE 147
             S    +++        K     GQ   ++L E     L+  +K    +G L  + V +
Sbjct: 83  --SGHPNIVQFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLK 140

Query: 148 ICKYILTGLDYLH-RELGIIHTDLKPENILL 177
           I       + ++H ++  IIH DLK EN+LL
Sbjct: 141 IFYQTCRAVQHMHRQKPPIIHRDLKVENLLL 171

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 35/192 (18%), Positives = 50/192 (26%), Gaps = 72/192 (37%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQF-----------AEEIQTR----QYRAPEVI-- 285
           K E  L       K+ DFG+A   +               EE  TR     YR PE+I  
Sbjct: 165 KVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDL 224

Query: 286 -LRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI 344
                     D+W+  C  + L      F           ED   L          +I  
Sbjct: 225 YSNFPIGEKQDIWALGCILYLLCFRQHPF-----------EDGAKL----------RIVN 263

Query: 345 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAR--EFAEFLVPLLDFTPEK 402
           G                               KY     D +   F   +  +L   PE+
Sbjct: 264 G-------------------------------KYSIPPHDTQYTVFHSLIRAMLQVNPEE 292

Query: 403 RPTAQQCLQHPW 414
           R +  + +    
Sbjct: 293 RLSIAEVVHQLQ 304

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 88.9 bits (221), Expect = 1e-19
 Identities = 39/182 (21%), Positives = 68/182 (37%), Gaps = 30/182 (16%)

Query: 247 CLDGIDMRCKVVDFGNACRA---NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACT 302
            ++  D   K+ DFG+A +    ++     I +R YRAPE+I     Y+ +VD+WS  C 
Sbjct: 163 LVNEADGTLKLCDFGSA-KKLSPSEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCI 221

Query: 303 AFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPR----KIAIGGAQSKDYFDRHGD 358
             E+  G+ +F   +          L  ++ ++G   R    K+         Y  +   
Sbjct: 222 FAEMMLGEPIFRGDNSA------GQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIP 275

Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS-L 417
              +         +   D               L  LL + PE+R    + L HP+   L
Sbjct: 276 WSNVFSDHSLKDAKEAYD--------------LLSALLQYLPEERMKPYEALCHPYFDEL 321

Query: 418 RN 419
            +
Sbjct: 322 HD 323

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 85.8 bits (213), Expect = 2e-18
 Identities = 32/149 (21%), Positives = 64/149 (42%), Gaps = 16/149 (10%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN 96
           R+  +R  G G F  V L  +  T   VA+K      +F    L  ++ L+ +      +
Sbjct: 24  RFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVL------H 77

Query: 97  EKCVIRLIDHFKHAGPNGQH---LCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKY-- 151
              +++L  +F   G   +    L +V+E++ D+L R  +    + +       + K   
Sbjct: 78  HPNIVQLQSYFYTLGERDRRDIYLNVVMEYVPDTLHRCCRNYYRRQVAPP--PILIKVFL 135

Query: 152 --ILTGLDYLHRE-LGIIHTDLKPENILL 177
             ++  +  LH   + + H D+KP N+L+
Sbjct: 136 FQLIRSIGCLHLPSVNVCHRDIKPHNVLV 164

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 87.7 bits (218), Expect = 2e-19
 Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 18/149 (12%)

Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALK----IQKSAAQFAQAALHEIEVLSAVAD 91
             +  ++K+G GQFS V+ A        VALK         A+     + EI++L  +  
Sbjct: 32  ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQL-- 89

Query: 92  GDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGD-SLLRLIKYSRYKGLEL--NKVREI 148
               N   VI+    F         L +VLE      L R+IK+ + +   +    V + 
Sbjct: 90  ----NHPNVIKYYASFIE----DNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKY 141

Query: 149 CKYILTGLDYLHRELGIIHTDLKPENILL 177
              + + L+++H    ++H D+KP N+ +
Sbjct: 142 FVQLCSALEHMH-SRRVMHRDIKPANVFI 169

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 32/167 (19%), Positives = 52/167 (31%), Gaps = 55/167 (32%)

Query: 256 KVVDFGNACRANKQFAEEIQTRQ-------YRAPEVILRAGYSFSVDMWSFACTAFELAT 308
           K+ D G      + F+ +            Y +PE I   GY+F  D+WS  C  +E+A 
Sbjct: 176 KLGDLGLG----RFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAA 231

Query: 309 GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFW 368
               F       + +  +  +L                             K+I +  + 
Sbjct: 232 LQSPF-------YGDKMNLYSLC----------------------------KKIEQCDY- 255

Query: 369 SLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
               L  D Y  SE    E  + +   ++  PEKRP           
Sbjct: 256 --PPLPSDHY--SE----ELRQLVNMCINPDPEKRPDVTYVYDVAKR 294

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 86.9 bits (216), Expect = 2e-19
 Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 17/152 (11%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGDPS 95
            Y  +  +G G +  V +A    T    A K I K   +       EIE++ ++      
Sbjct: 10  YYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSL------ 63

Query: 96  NEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYIL 153
           +   +IRL + F+    +   + +V+E    G+   R++    ++  E +    I K +L
Sbjct: 64  DHPNIIRLYETFE----DNTDIYLVMELCTGGELFERVVHKRVFR--E-SDAARIMKDVL 116

Query: 154 TGLDYLHRELGIIHTDLKPENILLVSTIDPSK 185
           + + Y H +L + H DLKPEN L ++    S 
Sbjct: 117 SAVAYCH-KLNVAHRDLKPENFLFLTDSPDSP 147

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 43.7 bits (104), Expect = 5e-05
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 243 KPERCL---DGIDMRCKVVDFG--NACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 297
           KPE  L   D  D   K++DFG     +  K    ++ T  Y +P+V L   Y    D W
Sbjct: 133 KPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMRTKVGTPYYVSPQV-LEGLYGPECDEW 191

Query: 298 S 298
           S
Sbjct: 192 S 192

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 395 LLDFTPEKRPTAQQCLQHPWLSLRNSTRD 423
           LL  +P++R T+ Q L+H W   + S+  
Sbjct: 245 LLTKSPKQRITSLQALEHEWFEKQLSSSP 273

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 86.6 bits (215), Expect = 2e-19
 Identities = 28/152 (18%), Positives = 47/152 (30%), Gaps = 20/152 (13%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADGD 93
            Y     +G G +              +  K            Q  + E+ +L  +    
Sbjct: 7   DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLREL---- 62

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLEL--NKVREIC 149
                 ++R  D           L +V+E+   GD L  +I     +   L    V  + 
Sbjct: 63  --KHPNIVRYYDRIID--RTNTTLYIVMEYCEGGD-LASVITKGTKERQYLDEEFVLRVM 117

Query: 150 KYILTGLDYLHRE----LGIIHTDLKPENILL 177
             +   L   HR       ++H DLKP N+ L
Sbjct: 118 TQLTLALKECHRRSDGGHTVLHRDLKPANVFL 149

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 39/176 (22%), Positives = 60/176 (34%), Gaps = 50/176 (28%)

Query: 243 KPERCLDGIDMRCKVVDFG--NACRANKQFAE-EIQTRQYRAPEVILRAGYSFSVDMWSF 299
           KP           K+ DFG       +  FA+  + T  Y +PE + R  Y+   D+WS 
Sbjct: 143 KPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSL 202

Query: 300 ACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDL 359
            C  +EL      F   S               EL GK                      
Sbjct: 203 GCLLYELCALMPPFTAFS-------------QKELAGK---------------------- 227

Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
             IR  KF  +        R+S+    E  E +  +L+     RP+ ++ L++P +
Sbjct: 228 --IREGKFRRIPY------RYSD----ELNEIITRMLNLKDYHRPSVEEILENPLI 271

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 86.8 bits (216), Expect = 3e-19
 Identities = 41/159 (25%), Positives = 62/159 (38%), Gaps = 23/159 (14%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI-------QKSAAQFAQAALHEIEVLSAV 89
            Y    +LG GQF+IV       T    A K                +    E+ +L  +
Sbjct: 6   HYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREI 65

Query: 90  ADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVRE 147
                     +I L D F+    N   + ++LE +  G+    L +       E ++  +
Sbjct: 66  ------RHPNIITLHDIFE----NKTDVVLILELVSGGELFDFLAEKESLT--E-DEATQ 112

Query: 148 ICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKD 186
             K IL G+ YLH    I H DLKPENI+L+    P+  
Sbjct: 113 FLKQILDGVHYLH-SKRIAHFDLKPENIMLLDKNVPNPR 150

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 243 KPERCL----DGIDMRCKVVDFGNACR--ANKQFAEEIQTRQYRAPEVILRAGYSFSVDM 296
           KPE  +    +  + R K++DFG A +  A  +F     T ++ APE++         DM
Sbjct: 135 KPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADM 194

Query: 297 WS 298
           WS
Sbjct: 195 WS 196

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 43.3 bits (103), Expect = 8e-05
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 395 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNK 428
           LL   P++R T  Q L+H W+          ++ 
Sbjct: 249 LLVKDPKRRMTIAQSLEHSWIKAIRRRNVRGEDS 282

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 87.2 bits (217), Expect = 3e-19
 Identities = 46/181 (25%), Positives = 74/181 (40%), Gaps = 27/181 (14%)

Query: 243 KPERCLDGIDMRC--KVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVD 295
           KPE  L  I      K+ DFG A R     +  + +E+ TR YR+PE+++    Y   VD
Sbjct: 129 KPENIL--ITKHSVIKLCDFGFA-RLLTGPSDYYDDEVATRWYRSPELLVGDTQYGPPVD 185

Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +W+  C   EL +G  L+  KS      D D L L+ + +G +  +     + ++ +   
Sbjct: 186 VWAIGCVFAELLSGVPLWPGKS------DVDQLYLIRKTLGDLIPRHQQVFSTNQYF--- 236

Query: 356 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
                   ++        L  K+      A      L   L   P +R T +Q L HP+ 
Sbjct: 237 -----SGVKIPDPEDMEPLELKFPNISYPALGL---LKGCLHMDPTERLTCEQLLHHPYF 288

Query: 416 S 416
            
Sbjct: 289 E 289

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 77.6 bits (192), Expect = 5e-16
 Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 15/144 (10%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ---FAQAALHEIEVLSAVADGD 93
           +Y    K+G G + +V+   +  T   VA+K    +       + AL EI +L  +    
Sbjct: 4   KYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQL---- 59

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYIL 153
                 ++ L++ F+        L +V E+   ++L  +     +G+  + V+ I    L
Sbjct: 60  --KHPNLVNLLEVFRRKR----RLHLVFEYCDHTVLHELD-RYQRGVPEHLVKSITWQTL 112

Query: 154 TGLDYLHRELGIIHTDLKPENILL 177
             +++ H+    IH D+KPENIL+
Sbjct: 113 QAVNFCHKH-NCIHRDVKPENILI 135

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 87.9 bits (218), Expect = 4e-19
 Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 23/188 (12%)

Query: 247 CLDGIDMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTA 303
            ++  D   K+ DFG+A     ++     I +R YRAPE++L A  Y+ S+D+WS  C  
Sbjct: 173 LVNSKDNTLKLCDFGSAKKLIPSEPSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVF 232

Query: 304 FELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIR 363
            EL  G  LF+ ++        D L  +++++G  P K  +       Y +       ++
Sbjct: 233 GELILGKPLFSGETSI------DQLVRIIQIMGT-PTKEQMIRMNP-HYTEVR--FPTLK 282

Query: 364 RLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS-LRNSTR 422
              +  +           E       + L  +L + P+ R    + + HP+   LRNS  
Sbjct: 283 AKDWRKI---------LPEGTPSLAIDLLEQILRYEPDLRINPYEAMAHPFFDHLRNSYE 333

Query: 423 DETKNKSN 430
            E KN SN
Sbjct: 334 SEVKNNSN 341

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 34/180 (18%), Positives = 71/180 (39%), Gaps = 52/180 (28%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGDPS 95
           +Y   + LG G F IV   +D  +    ALK +     Q  +    E++++  +      
Sbjct: 8   KYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVL----QDPRYKNRELDIMKVL------ 57

Query: 96  NEKCVIRLIDHFKHAG----------------------------------PNGQHLCMVL 121
           +   +I+L+D+F   G                                     ++L +++
Sbjct: 58  DHVNIIKLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIM 117

Query: 122 EFLGDSLLRLIKYSRYKGLELNKVREICKY----ILTGLDYLHRELGIIHTDLKPENILL 177
           E++ D+L +++K     G  +     +       +   + ++H  LGI H D+KP+N+L+
Sbjct: 118 EYVPDTLHKVLKSFIRSGRSIPM--NLISIYIYQLFRAVGFIH-SLGICHRDIKPQNLLV 174

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 86.6 bits (215), Expect = 4e-19
 Identities = 44/186 (23%), Positives = 76/186 (40%), Gaps = 29/186 (15%)

Query: 248 LDGIDMRCKVVDFGNACRANKQFA------EEIQTRQYRAPEVILRA-GYSFSVDMWSFA 300
           ++  D+  K+ DFG A   +  ++      E + T+ YR+P ++L    Y+ ++DMW+  
Sbjct: 153 INTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAG 212

Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK--DYFDRHGD 358
           C   E+ TG  LFA         + + + L++E I     +       S    Y      
Sbjct: 213 CIFAEMLTGKTLFAGAH------ELEQMQLILESIPV-VHEEDRQELLSVIPVYIRN--- 262

Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
                      L                E  +FL  +L F+P  R TA++ L HP++S+ 
Sbjct: 263 DMTEPHKPLTQL---------LPGISR-EAVDFLEQILTFSPMDRLTAEEALSHPYMSIY 312

Query: 419 NSTRDE 424
           +   DE
Sbjct: 313 SFPMDE 318

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 35/154 (22%), Positives = 65/154 (42%), Gaps = 21/154 (13%)

Query: 35  GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGD 93
           G RY+  + LG G   +V+ A D      VA+K I  +  Q  + AL EI+++  +    
Sbjct: 10  GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRL---- 65

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLC----------MVLEFLGDSLLRLIKYSRYKGLELN 143
             +   ++++ +    +G                 +V E++   L  +++      L   
Sbjct: 66  --DHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYMETDLANVLEQGP---LLEE 120

Query: 144 KVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
             R     +L GL Y+H    ++H DLKP N+ +
Sbjct: 121 HARLFMYQLLRGLKYIHSA-NVLHRDLKPANLFI 153

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 86.1 bits (214), Expect = 6e-19
 Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 17/152 (11%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGDPS 95
            +I    LG G FS V+L     T    ALK I+KS A    +  +EI VL  +      
Sbjct: 10  TFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKI------ 63

Query: 96  NEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYIL 153
             + ++ L D ++    +  H  +V++ +  G+   R+++   Y   E      + + +L
Sbjct: 64  KHENIVTLEDIYE----STTHYYLVMQLVSGGELFDRILERGVYT--E-KDASLVIQQVL 116

Query: 154 TGLDYLHRELGIIHTDLKPENILLVSTIDPSK 185
           + + YLH E GI+H DLKPEN+L ++  + SK
Sbjct: 117 SAVKYLH-ENGIVHRDLKPENLLYLTPEENSK 147

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 243 KPERCL---DGIDMRCKVVDFGNA-CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 298
           KPE  L      + +  + DFG +    N   +    T  Y APEV+ +  YS +VD WS
Sbjct: 133 KPENLLYLTPEENSKIMITDFGLSKMEQNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWS 192

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 86.5 bits (215), Expect = 6e-19
 Identities = 44/179 (24%), Positives = 70/179 (39%), Gaps = 27/179 (15%)

Query: 243 KPERCLDGIDMRC--KVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAG-YSFSVD 295
           KPE  L  +      K+ DFG A R      + + +E+ TR YRAPE+++    Y  +VD
Sbjct: 151 KPENIL--VSQSGVVKLCDFGFA-RTLAAPGEVYDDEVATRWYRAPELLVGDVKYGKAVD 207

Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +W+  C   E+  G+ LF   S      D D L  +M  +G +  +      ++  +   
Sbjct: 208 VWAIGCLVTEMFMGEPLFPGDS------DIDQLYHIMMCLGNLIPRHQELFNKNPVF--- 258

Query: 356 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
                   RL        L  +Y        +        L   P+KRP   + L H +
Sbjct: 259 -----AGVRLPEIKEREPLERRYPKLSEVVIDL---AKKCLHIDPDKRPFCAELLHHDF 309

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 72.3 bits (178), Expect = 3e-14
 Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 15/144 (10%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ---FAQAALHEIEVLSAVADGD 93
           +Y     +G G + +V    +  T   VA+K    +       + A+ EI++L  +    
Sbjct: 26  KYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQL---- 81

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYIL 153
               + ++ L++  K          +V EF+  ++L  ++     GL+   V++    I+
Sbjct: 82  --RHENLVNLLEVCKKKK----RWYLVFEFVDHTILDDLE-LFPNGLDYQVVQKYLFQII 134

Query: 154 TGLDYLHRELGIIHTDLKPENILL 177
            G+ + H    IIH D+KPENIL+
Sbjct: 135 NGIGFCHSH-NIIHRDIKPENILV 157

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 86.3 bits (214), Expect = 7e-19
 Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 9/146 (6%)

Query: 35  GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDP 94
            G +     +G G +  V+     +T    A+K+        +    EI +L        
Sbjct: 23  AGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLK-----KY 77

Query: 95  SNEKCVIRLIDHF--KHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKY 151
           S+ + +      F  K+       L +V+EF    S+  LIK ++   L+   +  IC+ 
Sbjct: 78  SHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICRE 137

Query: 152 ILTGLDYLHRELGIIHTDLKPENILL 177
           IL GL +LH+   +IH D+K +N+LL
Sbjct: 138 ILRGLSHLHQH-KVIHRDIKGQNVLL 162

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 22/72 (30%)

Query: 254 RCKVVDFGNACRANKQFAEEIQTRQYR----------APEVILR-----AGYSFSVDMWS 298
             K+VDFG +       A+  +T   R          APEVI       A Y F  D+WS
Sbjct: 167 EVKLVDFGVS-------AQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWS 219

Query: 299 FACTAFELATGD 310
              TA E+A G 
Sbjct: 220 LGITAIEMAEGA 231

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 85.5 bits (212), Expect = 8e-19
 Identities = 29/158 (18%), Positives = 60/158 (37%), Gaps = 23/158 (14%)

Query: 36  GRYIAQ----RKLGWGQFSIVWLAYDTRTSSYVALKIQK--SAAQFAQAALHEIEVLSAV 89
           GRY+      + LG G F +V+ A +       A+K  +  +     +  + E++ L+ +
Sbjct: 1   GRYLTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKL 60

Query: 90  ADGDPSNEKCVIRLIDHFKHAGPNGQH--------LCMVLEFL-GDSLLRLIKYSRYKG- 139
                     ++R  + +       +         L + ++    ++L   +        
Sbjct: 61  ------EHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEE 114

Query: 140 LELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
            E +    I   I   +++LH   G++H DLKP NI  
Sbjct: 115 RERSVCLHIFLQIAEAVEFLH-SKGLMHRDLKPSNIFF 151

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 34/179 (18%), Positives = 53/179 (29%), Gaps = 64/179 (35%)

Query: 252 DMRCKVVDFGNACRANKQFAEEIQ---------------TRQYRAPEVILRAGYSFSVDM 296
           D   KV DFG     ++   E+                 T+ Y +PE I    YS  VD+
Sbjct: 154 DDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDI 213

Query: 297 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 356
           +S     FE     +L+   +                                    +R 
Sbjct: 214 FSLGLILFE-----LLYPFSTQ----------------------------------MERV 234

Query: 357 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
             L  +R LKF     L   KY             +  +L  +P +RP A   +++   
Sbjct: 235 RTLTDVRNLKF---PPLFTQKY-------PCEYVMVQDMLSPSPMERPEAINIIENAVF 283

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 85.4 bits (212), Expect = 1e-18
 Identities = 43/153 (28%), Positives = 63/153 (41%), Gaps = 17/153 (11%)

Query: 37  RYIAQRK-LGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGDP 94
            Y  Q   LG G  + V    +  TS   A+K I+K           E+E+L        
Sbjct: 13  VYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQC----- 67

Query: 95  SNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLL-RLIKYSRYKGLELNKVREICKYI 152
              + V+ LI+ F+          +V E + G S+L  + K   +  LE      + + +
Sbjct: 68  QGHRNVLELIEFFE----EEDRFYLVFEKMRGGSILSHIHKRRHFNELE---ASVVVQDV 120

Query: 153 LTGLDYLHRELGIIHTDLKPENILLVSTIDPSK 185
            + LD+LH   GI H DLKPENIL       S 
Sbjct: 121 ASALDFLH-NKGIAHRDLKPENILCEHPNQVSP 152

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 40/202 (19%), Positives = 58/202 (28%), Gaps = 67/202 (33%)

Query: 243 KPERCL---DGIDMRCKVVDFGNA--CRANKQFAEEIQ--------TRQYRAPEVILRA- 288
           KPE  L          K+ DF      + N   +            + +Y APEV+    
Sbjct: 138 KPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFS 197

Query: 289 ----GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI 344
                Y    D+WS     + L +G   F  + G     D        +    +   I  
Sbjct: 198 EEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQ--NMLFESIQE 255

Query: 345 GGAQSKDY-FDRHG---------DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVP 394
           G      Y F             DL  I +L       L+ D                  
Sbjct: 256 G-----KYEFPDKDWAHISCAAKDL--ISKL-------LVRD------------------ 283

Query: 395 LLDFTPEKRPTAQQCLQHPWLS 416
                 ++R +A Q LQHPW+ 
Sbjct: 284 -----AKQRLSAAQVLQHPWVQ 300

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 85.4 bits (212), Expect = 2e-18
 Identities = 39/188 (20%), Positives = 74/188 (39%), Gaps = 23/188 (12%)

Query: 243 KPERCLDGIDMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVIL-RAGYSFSVDMWSF 299
            P   L   +    + DF  A    A+      +  R YRAPE+++   G++  VDMWS 
Sbjct: 161 HPGNILLADNNDITICDFNLAREDTADANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSA 220

Query: 300 ACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHG 357
            C   E+     LF   +        + L  ++E++G    +         ++DY     
Sbjct: 221 GCVMAEMFNRKALFRGSTFY------NQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNS- 273

Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 417
            L  +    + ++          ++  A +    +  +L+F P++R + +Q L+HP+   
Sbjct: 274 -LSNVPARAWTAV-------VPTADPVALDL---IAKMLEFNPQRRISTEQALRHPYFES 322

Query: 418 RNSTRDET 425
                D T
Sbjct: 323 LFDPLDLT 330

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 72.3 bits (178), Expect = 4e-14
 Identities = 42/177 (23%), Positives = 67/177 (37%), Gaps = 32/177 (18%)

Query: 20  RKGGYHAVRV-GDLFN-GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQ-- 74
            KG      +  +L      Y  QR +  G +  V    D+     VA+K +  + +   
Sbjct: 4   AKGEAAMRDLIAELHAMQSPYTVQRFISSGSYGAVCAGVDS-EGIPVAIKRVFNTVSDGR 62

Query: 75  ---------FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG-QHLCMVLEFL 124
                      +  L EI +L+        +   ++ L D F H        L +V E +
Sbjct: 63  TVNILSDSFLCKRVLREIRLLNHF------HHPNILGLRDIFVHFEEPAMHKLYLVTELM 116

Query: 125 GDSLLRLIKYSRYKGLELNKVREICKY----ILTGLDYLHRELGIIHTDLKPENILL 177
              L ++I   +   +      +  +Y    IL GL  LH E G++H DL P NILL
Sbjct: 117 RTDLAQVIH-DQRIVIS----PQHIQYFMYHILLGLHVLH-EAGVVHRDLHPGNILL 167

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 85.0 bits (211), Expect = 2e-18
 Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 14/151 (9%)

Query: 39  IAQRKLGWGQFSIVWLAYDTRTSSYVALKI---QKSAAQFAQAALHEIEVLSAVADGDPS 95
           +  ++LG G+F++V       T    A K    ++         LHEI VL       P 
Sbjct: 32  LTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELA-KSCPR 90

Query: 96  NEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILT 154
               VI L + ++    N   + ++LE+  G  +  L      + +  N V  + K IL 
Sbjct: 91  ----VINLHEVYE----NTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILE 142

Query: 155 GLDYLHRELGIIHTDLKPENILLVSTIDPSK 185
           G+ YLH +  I+H DLKP+NILL S      
Sbjct: 143 GVYYLH-QNNIVHLDLKPQNILLSSIYPLGD 172

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 243 KPERCL---DGIDMRCKVVDFGNACR--ANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 297
           KP+  L          K+VDFG + +     +  E + T +Y APE++     + + DMW
Sbjct: 158 KPQNILLSSIYPLGDIKIVDFGMSRKIGHACELREIMGTPEYLAPEILNYDPITTATDMW 217

Query: 298 S 298
           +
Sbjct: 218 N 218

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 395 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNV 431
           LL   PEKRPTA+ CL H WL   +        +++ 
Sbjct: 271 LLVKNPEKRPTAEICLSHSWLQQWDFENLFHPEETSS 307

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 85.8 bits (213), Expect = 2e-18
 Identities = 51/194 (26%), Positives = 80/194 (41%), Gaps = 48/194 (24%)

Query: 243 KPER-CLDGIDMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWS 298
           KP+   LD      K++DFG+A    A +     I +R YRAPE+I  A  Y+ ++D+WS
Sbjct: 168 KPQNLLLDPPSGVLKLIDFGSAKILIAGEPNVSYICSRYYRAPELIFGATNYTTNIDIWS 227

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
             C   EL  G  LF  +SG       D L  +++++G   R+                 
Sbjct: 228 TGCVMAELMQGQPLFPGESG------IDQLVEIIKVLGTPSRE----------------Q 265

Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVP------------LLDFTPEKRPTA 406
           +K +               ++F +     F++   P            LL++TP  R TA
Sbjct: 266 IKTMNPNYME---------HKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTA 316

Query: 407 QQCLQHPWL-SLRN 419
            + L HP+   LR 
Sbjct: 317 IEALCHPFFDELRT 330

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 77.4 bits (191), Expect = 1e-15
 Identities = 39/192 (20%), Positives = 76/192 (39%), Gaps = 28/192 (14%)

Query: 1   MSCSSSSGSEDDDEGIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRT 60
           ++    +  +D ++ I      G    +         Y   + +G G F +V+ A    +
Sbjct: 10  LNGVKLNPLDDPNKVIKVLASDGKTGEQREI-----AYTNCKVIGNGSFGVVFQAKLVES 64

Query: 61  SSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG--PNGQHLC 118
              VA+K      Q  +    E++++  V          V+ L   F   G   +   L 
Sbjct: 65  DE-VAIK---KVLQDKRFKNRELQIMRIV------KHPNVVDLKAFFYSNGDKKDEVFLN 114

Query: 119 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKY----ILTGLDYLHRELGIIHTDLKPEN 174
           +VLE++ +++ R  ++       +     + K     +L  L Y+H  +GI H D+KP+N
Sbjct: 115 LVLEYVPETVYRASRHYAKLKQTMPM--LLIKLYMYQLLRSLAYIHS-IGICHRDIKPQN 171

Query: 175 ILLVSTIDPSKD 186
           +L    +DP   
Sbjct: 172 LL----LDPPSG 179

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 85.0 bits (211), Expect = 2e-18
 Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 28/183 (15%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFA------EEIQTRQYRAPEVILRA-GYSFSVD 295
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 155 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 214

Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYF 353
           +WS  C   E+ +   +F  K         D L  ++ ++G   ++    I   ++++Y 
Sbjct: 215 IWSVGCILAEMLSNRPIFPGKHYL------DQLNHILGILGSPSQEDLNCIINLKARNYL 268

Query: 354 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP 413
                L    ++ +  L       +  +++ A +    L  +L F P KR   +Q L HP
Sbjct: 269 LS---LPHKNKVPWNRL-------FPNADSKALDL---LDKMLTFNPHKRIEVEQALAHP 315

Query: 414 WLS 416
           +L 
Sbjct: 316 YLE 318

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 14/152 (9%)

Query: 30  GDLFN-GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQK-SAAQFAQAALHEIEVL 86
           G +F+ G RY     +G G + +V  AYD      VA+K I       + Q  L EI++L
Sbjct: 20  GQVFDVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKIL 79

Query: 87  SAVADGDPSNEKCVIRLIDHFKHAGPNG-QHLCMVLEFLGDSLLRLIKYSRYKGLELNKV 145
                      + +I + D  +       + + +V + +   L +L+K      L  + +
Sbjct: 80  LRF------RHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQH---LSNDHI 130

Query: 146 REICKYILTGLDYLHRELGIIHTDLKPENILL 177
                 IL GL Y+H    ++H DLKP N+LL
Sbjct: 131 CYFLYQILRGLKYIHSA-NVLHRDLKPSNLLL 161

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 83.8 bits (208), Expect = 2e-18
 Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 19/154 (12%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI---QKSAAQFAQAALHEIEVLSAVADGD 93
           RY     LG G F  V    D  T    A+K+     +  +     L E+E+L  +    
Sbjct: 23  RYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKL---- 78

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKY 151
             +   +++L +  +    +     +V E    G+    +IK  R+   E +    I K 
Sbjct: 79  --DHPNIMKLFEILE----DSSSFYIVGELYTGGELFDEIIKRKRFS--E-HDAARIIKQ 129

Query: 152 ILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK 185
           + +G+ Y+H +  I+H DLKPENILL S      
Sbjct: 130 VFSGITYMH-KHNIVHRDLKPENILLESKEKDCD 162

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 243 KPERCL---DGIDMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 297
           KPE  L      D   K++DFG +   + N +  + I T  Y APEV LR  Y    D+W
Sbjct: 148 KPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEV-LRGTYDEKCDVW 206

Query: 298 S 298
           S
Sbjct: 207 S 207

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 395 LLDFTPEKRPTAQQCLQHPWLSLRNS 420
           +L F P  R TA QCL+HPW+   +S
Sbjct: 260 MLTFHPSLRITATQCLEHPWIQKYSS 285

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 85.5 bits (212), Expect = 2e-18
 Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 24/183 (13%)

Query: 4   SSSSGSEDDDEGIDSYRKGGYHAVRV--GDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTS 61
                ++ D    D ++K     V V  G +++   Y    +LG G F +V    +  T 
Sbjct: 19  DGPKINDYDKFYEDIWKKYVPQPVEVKQGSVYD--YYDILEELGSGAFGVVHRCVEKATG 76

Query: 62  SYVALK-IQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMV 120
                K I            +EI +++ +      +   +I L D F+    +   + ++
Sbjct: 77  RVFVAKFINTPYPLDKYTVKNEISIMNQL------HHPKLINLHDAFE----DKYEMVLI 126

Query: 121 LEFL--GDSLLRLIKYSRYKGLELN--KVREICKYILTGLDYLHRELGIIHTDLKPENIL 176
           LEFL  G+   R+      +  +++  +V    +    GL ++H E  I+H D+KPENI+
Sbjct: 127 LEFLSGGELFDRIAA----EDYKMSEAEVINYMRQACEGLKHMH-EHSIVHLDIKPENIM 181

Query: 177 LVS 179
             +
Sbjct: 182 CET 184

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 243 KPER--CLDGIDMRCKVVDFGNACR--ANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 298
           KPE   C        K++DFG A +   ++       T ++ APE++ R    F  DMW+
Sbjct: 176 KPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWA 235

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 14/40 (35%), Positives = 17/40 (42%)

Query: 395 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEKV 434
           LL   P KR T    L+HPWL   +S        S   K+
Sbjct: 288 LLQKEPRKRLTVHDALEHPWLKGDHSNLTSRIPSSRYNKI 327

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 86.4 bits (214), Expect = 3e-18
 Identities = 38/185 (20%), Positives = 71/185 (38%), Gaps = 16/185 (8%)

Query: 2   SCSSSSGSEDDDEGIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTS 61
             + SS  ++    I          ++   + +   Y    +LG G F +V    +  T 
Sbjct: 125 KGTVSSNYDNYVFDIWKQYYPQPVEIKHDHVLD--HYDIHEELGTGAFGVVHRVTERATG 182

Query: 62  SYVALK-IQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMV 120
           +  A K +        +    EI+ +S +          ++ L D F+    +   + M+
Sbjct: 183 NNFAAKFVMTPHESDKETVRKEIQTMSVL------RHPTLVNLHDAFE----DDNEMVMI 232

Query: 121 LEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVS 179
            EF+ G  L   +     K  E ++  E  + +  GL ++H E   +H DLKPENI+  +
Sbjct: 233 YEFMSGGELFEKVADEHNKMSE-DEAVEYMRQVCKGLCHMH-ENNYVHLDLKPENIMFTT 290

Query: 180 TIDPS 184
                
Sbjct: 291 KRSNE 295

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 243 KPER--CLDGIDMRCKVVDFGNACR--ANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 298
           KPE            K++DFG        +       T ++ APEV       +  DMWS
Sbjct: 282 KPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWS 341

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 395 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEK 433
           LL   P  R T  Q L+HPWL+  N+   +++  S+   
Sbjct: 394 LLLADPNTRMTIHQALEHPWLTPGNAPGRDSQIPSSRYT 432

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 85.5 bits (212), Expect = 3e-18
 Identities = 46/196 (23%), Positives = 76/196 (38%), Gaps = 52/196 (26%)

Query: 243 KPERCLDGIDMRC---KVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRA-GYSFSVDM 296
           KP+  L  +D      K+ DFG+A      +     I +R YRAPE+I  A  Y+ S+D+
Sbjct: 183 KPQNLL--LDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDV 240

Query: 297 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 356
           WS  C   EL  G  +F   SG       D L  +++++G   R+               
Sbjct: 241 WSAGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE--------------- 279

Query: 357 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVP------------LLDFTPEKRP 404
             ++ +               ++F +  A  + +   P            LL++TP  R 
Sbjct: 280 -QIREMNPNYTE---------FKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARL 329

Query: 405 TAQQCLQHPWLS-LRN 419
           T  +   H +   LR+
Sbjct: 330 TPLEACAHSFFDELRD 345

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 85.1 bits (211), Expect = 4e-18
 Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 18/147 (12%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN 96
            Y   + +G G F +V+ A    +   VA+   K   Q  +    E++++  +      +
Sbjct: 55  SYTDTKVIGNGSFGVVYQAKLCDSGELVAI---KKVLQDKRFKNRELQIMRKL------D 105

Query: 97  EKCVIRLIDHFKHAGPNGQ--HLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKY--- 151
              ++RL   F  +G      +L +VL+++ +++ R+ ++       L       K    
Sbjct: 106 HCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLP--VIYVKLYMY 163

Query: 152 -ILTGLDYLHRELGIIHTDLKPENILL 177
            +   L Y+H   GI H D+KP+N+LL
Sbjct: 164 QLFRSLAYIHS-FGICHRDIKPQNLLL 189

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 84.2 bits (209), Expect = 3e-18
 Identities = 41/159 (25%), Positives = 62/159 (38%), Gaps = 23/159 (14%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI-------QKSAAQFAQAALHEIEVLSAV 89
            Y    +LG GQF++V    +  T    A K                +    E+ +L  +
Sbjct: 12  YYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEI 71

Query: 90  ADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVRE 147
                     VI L + ++    N   + ++LE +  G+    L +       E  +  E
Sbjct: 72  ------QHPNVITLHEVYE----NKTDVILILELVAGGELFDFLAEKESLT--E-EEATE 118

Query: 148 ICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKD 186
             K IL G+ YLH  L I H DLKPENI+L+    P   
Sbjct: 119 FLKQILNGVYYLH-SLQIAHFDLKPENIMLLDRNVPKPR 156

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 243 KPERCL----DGIDMRCKVVDFGNACR--ANKQFAEEIQTRQYRAPEVILRAGYSFSVDM 296
           KPE  +    +    R K++DFG A +     +F     T ++ APE++         DM
Sbjct: 141 KPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADM 200

Query: 297 WS 298
           WS
Sbjct: 201 WS 202

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 395 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKS 429
           LL   P+KR T Q  LQHPW+  +++ +  ++  S
Sbjct: 255 LLVKDPKKRMTIQDSLQHPWIKPKDTQQALSRKAS 289

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 84.2 bits (209), Expect = 3e-18
 Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 19/147 (12%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN 96
           +Y+    LG G+F IV    +T +      K  K           EI +L+         
Sbjct: 6   KYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIA------R 59

Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELN--KVREICKYI 152
            + ++ L + F+    + + L M+ EF+   D   R+         ELN  ++      +
Sbjct: 60  HRNILHLHESFE----SMEELVMIFEFISGLDIFERINT----SAFELNEREIVSYVHQV 111

Query: 153 LTGLDYLHRELGIIHTDLKPENILLVS 179
              L +LH    I H D++PENI+  +
Sbjct: 112 CEALQFLH-SHNIGHFDIRPENIIYQT 137

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 49.5 bits (119), Expect = 9e-07
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 243 KPER--CLDGIDMRCKVVDFGNACR--ANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 298
           +PE            K+++FG A +      F       +Y APEV      S + DMWS
Sbjct: 129 RPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWS 188

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 395 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEK 433
           LL    + R TA + LQHPWL  +   R  TK    ++ 
Sbjct: 241 LLVKERKSRMTASEALQHPWLK-QKIERVSTKVIRTLKH 278

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 83.4 bits (207), Expect = 4e-18
 Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 16/154 (10%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALH-EIEVLSAVADGDP 94
            +I +RKLG G F  V L  +  +     +K I K  +Q     +  EIEVL ++     
Sbjct: 23  LFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSL----- 77

Query: 95  SNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLL-RLIKYSRYKG-LELNKVREICKY 151
            +   +I++ + F+    +  ++ +V+E   G  LL R++        L    V E+ K 
Sbjct: 78  -DHPNIIKIFEVFE----DYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQ 132

Query: 152 ILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK 185
           ++  L Y H    ++H DLKPENIL   T   S 
Sbjct: 133 MMNALAYFH-SQHVVHKDLKPENILFQDTSPHSP 165

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 243 KPERCL---DGIDMRCKVVDFG--NACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 297
           KPE  L          K++DFG     ++++       T  Y APEV  +   +F  D+W
Sbjct: 151 KPENILFQDTSPHSPIKIIDFGLAELFKSDEHSTNAAGTALYMAPEV-FKRDVTFKCDIW 209

Query: 298 S 298
           S
Sbjct: 210 S 210

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 395 LLDFTPEKRPTAQQCLQHPWL 415
           +L   PE+RP+A Q L H W 
Sbjct: 262 MLTKDPERRPSAAQVLHHEWF 282

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 84.7 bits (210), Expect = 4e-18
 Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 12/159 (7%)

Query: 272 EEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLAL 330
           + + TR YRAPE++L +  Y+  +DMWS  C   E+  G  +F   S        + L  
Sbjct: 189 DYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTM------NQLER 242

Query: 331 MMELIGKMPRKI--AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREF 388
           ++ +I     +   +I    +K   +   +   IR+     +     +        A   
Sbjct: 243 IIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCN 302

Query: 389 AE---FLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE 424
            E    L  LL F P KR +A   L+HP++S+ ++  +E
Sbjct: 303 EEALDLLDKLLQFNPNKRISANDALKHPFVSIFHNPNEE 341

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 71.6 bits (176), Expect = 8e-14
 Identities = 41/148 (27%), Positives = 71/148 (47%), Gaps = 22/148 (14%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQK--SAAQFAQAALHEIEVLSAVADGD 93
           +Y   +KLG G + IVW + D RT   VA+K I      +  AQ    EI +L+ +    
Sbjct: 10  KYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTEL---- 65

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKY-- 151
            S  + ++ L++  +    N + + +V +++   L  +I     +   L  V    +Y  
Sbjct: 66  -SGHENIVNLLNVLR--ADNDRDVYLVFDYMETDLHAVI-----RANILEPVH--KQYVV 115

Query: 152 --ILTGLDYLHRELGIIHTDLKPENILL 177
             ++  + YLH   G++H D+KP NILL
Sbjct: 116 YQLIKVIKYLH-SGGLLHRDMKPSNILL 142

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* Length = 330

 Score = 83.6 bits (207), Expect = 5e-18
 Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 12/149 (8%)

Query: 29  VGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSA 88
           +G L  G  +   +K+G G F  + L  +  T+ YVA+K++   ++  Q    E      
Sbjct: 2   MGVLMVGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQ-LHLEYRFYKQ 60

Query: 89  VADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREI 148
           +  GD          I    + GP G++  MVLE LG SL  L          L  V  I
Sbjct: 61  LGSGDG---------IPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRT-FSLKTVLMI 110

Query: 149 CKYILTGLDYLHRELGIIHTDLKPENILL 177
              +++ ++Y+H +  +I+ D+KPEN L+
Sbjct: 111 AIQLISRMEYVHSK-NLIYRDVKPENFLI 138

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 83.5 bits (207), Expect = 6e-18
 Identities = 42/159 (26%), Positives = 61/159 (38%), Gaps = 23/159 (14%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI-------QKSAAQFAQAALHEIEVLSAV 89
            Y    +LG GQF+IV    +  T    A K                +    E+ +L  V
Sbjct: 13  FYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQV 72

Query: 90  ADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVRE 147
                     VI L D ++    N   + ++LE +  G+    L +       E  +   
Sbjct: 73  ------LHHNVITLHDVYE----NRTDVVLILELVSGGELFDFLAQKESLS--E-EEATS 119

Query: 148 ICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKD 186
             K IL G++YLH    I H DLKPENI+L+    P   
Sbjct: 120 FIKQILDGVNYLH-TKKIAHFDLKPENIMLLDKNIPIPH 157

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 243 KPERCL----DGIDMRCKVVDFGNACR--ANKQFAEEIQTRQYRAPEVILRAGYSFSVDM 296
           KPE  +    +      K++DFG A       +F     T ++ APE++         DM
Sbjct: 142 KPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADM 201

Query: 297 WS 298
           WS
Sbjct: 202 WS 203

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 395 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNV 431
           LL     KR T Q+ L+HPW++  ++ +   + +S V
Sbjct: 256 LLVKETRKRLTIQEALRHPWITPVDNQQAMVRRESVV 292

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 84.4 bits (209), Expect = 9e-18
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 20/155 (12%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKS---AAQFAQAALHEIEVLSAVADG 92
           RY  QR LG G F  V L  D  T    A+K I K         ++ L E+++L  +   
Sbjct: 27  RYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQL--- 83

Query: 93  DPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICK 150
           D  N   +++L + F+    +  +  +V E    G+    +I   R+   E      I +
Sbjct: 84  DHPN---IMKLYEFFE----DKGYFYLVGEVYTGGELFDEIISRKRFS--E-VDAARIIR 133

Query: 151 YILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK 185
            +L+G+ Y+H +  I+H DLKPEN+LL S    + 
Sbjct: 134 QVLSGITYMH-KNKIVHRDLKPENLLLESKSKDAN 167

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 65.9 bits (161), Expect = 9e-12
 Identities = 42/210 (20%), Positives = 71/210 (33%), Gaps = 57/210 (27%)

Query: 243 KPERCL---DGIDMRCKVVDFGNAC--RANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 297
           KPE  L      D   +++DFG +    A+K+  ++I T  Y APEV L   Y    D+W
Sbjct: 153 KPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEV-LHGTYDEKCDVW 211

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY-FDRH 356
           S     + L +G   F   +             +++ +            +   Y F+  
Sbjct: 212 STGVILYILLSGCPPFNGANEYD----------ILKKV------------EKGKYTFEL- 248

Query: 357 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
                      W          + SE  A+   + +  +L + P  R +A+  L H W+ 
Sbjct: 249 ---------PQWK---------KVSE-SAK---DLIRKMLTYVPSMRISARDALDHEWIQ 286

Query: 417 LRNSTRDETKNKSNVEKVD-----VGMSKL 441
                +      S    +       G  KL
Sbjct: 287 TYTKEQISVDVPSLDNAILNIRQFQGTQKL 316

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 82.3 bits (204), Expect = 9e-18
 Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 25/153 (16%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFA---------QAALHEIEVL 86
            Y  +  LG G  S+V       T    A+K I  +              +A L E+++L
Sbjct: 18  NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL 77

Query: 87  SAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNK 144
             V     S    +I+L D ++          +V + +  G+    L +       E  +
Sbjct: 78  RKV-----SGHPNIIQLKDTYE----TNTFFFLVFDLMKKGELFDYLTEKVTLS--E-KE 125

Query: 145 VREICKYILTGLDYLHRELGIIHTDLKPENILL 177
            R+I + +L  +  LH +L I+H DLKPENILL
Sbjct: 126 TRKIMRALLEVICALH-KLNIVHRDLKPENILL 157

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 243 KPERCLDGIDMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRA------GYSFSV 294
           KPE  L   DM  K+ DFG +      ++  E   T  Y APE+I  +      GY   V
Sbjct: 151 KPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEV 210

Query: 295 DMWS 298
           DMWS
Sbjct: 211 DMWS 214

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 395 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETK 426
            L   P+KR TA++ L HP+   +    +E +
Sbjct: 267 FLVVQPQKRYTAEEALAHPF--FQQYVVEEVR 296

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 82.3 bits (204), Expect = 9e-18
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 21/149 (14%)

Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGDPSN 96
            +  + LG G    V   ++ RT    ALK +Q         A  E+E+    +      
Sbjct: 20  KVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQ----- 69

Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLEL---NKVREICKY 151
              ++R++D +++     + L +V+E L  G+   R+      +G +     +  EI K 
Sbjct: 70  CPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQD----RGDQAFTEREASEIMKS 125

Query: 152 ILTGLDYLHRELGIIHTDLKPENILLVST 180
           I   + YLH  + I H D+KPEN+L  S 
Sbjct: 126 IGEAIQYLH-SINIAHRDVKPENLLYTSK 153

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 11/39 (28%), Positives = 16/39 (41%)

Query: 395 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEK 433
           LL   P +R T  + + HPW+           + S V K
Sbjct: 240 LLKTEPTQRMTITEFMNHPWIMQSTKVPQTPLHTSRVLK 278

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 83.2 bits (206), Expect = 1e-17
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 33/181 (18%)

Query: 15  GIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI------ 68
           G++++++                Y    +LG GQF+IV    +  T    A K       
Sbjct: 1   GMETFKQQKVED----------FYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQS 50

Query: 69  -QKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--G 125
                    +    E+ +L  V          +I L D ++    N   + ++LE +  G
Sbjct: 51  RASRRGVCREEIEREVSILRQV------LHPNIITLHDVYE----NRTDVVLILELVSGG 100

Query: 126 DSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK 185
           +    L +       E  +     K IL G++YLH    I H DLKPENI+L+    P  
Sbjct: 101 ELFDFLAQKESLS--E-EEATSFIKQILDGVNYLH-TKKIAHFDLKPENIMLLDKNIPIP 156

Query: 186 D 186
            
Sbjct: 157 H 157

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 243 KPERCL----DGIDMRCKVVDFGNACR--ANKQFAEEIQTRQYRAPEVILRAGYSFSVDM 296
           KPE  +    +      K++DFG A       +F     T ++ APE++         DM
Sbjct: 142 KPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADM 201

Query: 297 WS 298
           WS
Sbjct: 202 WS 203

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 395 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNV 431
           LL     KR T Q+ L+HPW++  ++ +   + +S V
Sbjct: 256 LLVKETRKRLTIQEALRHPWITPVDTQQAMVRRESVV 292

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 82.9 bits (205), Expect = 1e-17
 Identities = 38/175 (21%), Positives = 67/175 (38%), Gaps = 20/175 (11%)

Query: 4   SSSSGSEDDDEGIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSY 63
                  +D+EG+    K         +  +      Q ++G G F  V    D +T   
Sbjct: 28  QRLGPETEDNEGVLLTEKLKPVDYEYREEVH--WMTHQPRVGRGSFGEVHRMKDKQTGFQ 85

Query: 64  VALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEF 123
            A+K      +     + E+   + +          ++ L    +     G  + + +E 
Sbjct: 86  CAVKK----VRLEVFRVEELVACAGL---SSPR---IVPLYGAVRE----GPWVNIFMEL 131

Query: 124 L-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
           L G SL +LIK  +   L  ++        L GL+YLH    I+H D+K +N+LL
Sbjct: 132 LEGGSLGQLIK--QMGCLPEDRALYYLGQALEGLEYLHTR-RILHGDVKADNVLL 183

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 70.9 bits (174), Expect = 9e-14
 Identities = 24/175 (13%), Positives = 43/175 (24%), Gaps = 53/175 (30%)

Query: 254 RCKVVDFGNACRANKQFAEEIQTRQ--------YRAPEVILRAGYSFSVDMWSFACTAFE 305
           R  + DFG+A         +             + APEV++       VD+WS  C    
Sbjct: 189 RAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLH 248

Query: 306 LATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRL 365
           +  G   +                L +  I   P              +           
Sbjct: 249 MLNGCHPWT---------QYFRGPLCL-KIASEP----------PPIREIPPSC------ 282

Query: 366 KFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS 420
                          +       A+ +   L   P  R +A +  +    +L+  
Sbjct: 283 ---------------AP----LTAQAIQEGLRKEPVHRASAMELRRKVGKALQEV 318

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 82.8 bits (205), Expect = 1e-17
 Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 24/154 (15%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALH--------EIEVLS 87
           +Y  +  +G G  S+V       T    A+K ++ +A + +   L         E  +L 
Sbjct: 95  KYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILR 154

Query: 88  AVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKV 145
            V     +    +I LID ++    +   + +V + +  G+    L +       E  + 
Sbjct: 155 QV-----AGHPHIITLIDSYE----SSSFMFLVFDLMRKGELFDYLTEKVALS--E-KET 202

Query: 146 REICKYILTGLDYLHRELGIIHTDLKPENILLVS 179
           R I + +L  + +LH    I+H DLKPENILL  
Sbjct: 203 RSIMRSLLEAVSFLH-ANNIVHRDLKPENILLDD 235

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 8/64 (12%)

Query: 243 KPERCLDGIDMRCKVVDFGNAC--RANKQFAEEIQTRQYRAPEVILRA------GYSFSV 294
           KPE  L   +M+ ++ DFG +C     ++  E   T  Y APE++  +      GY   V
Sbjct: 227 KPENILLDDNMQIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEV 286

Query: 295 DMWS 298
           D+W+
Sbjct: 287 DLWA 290

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 395 LLDFTPEKRPTAQQCLQHPWL 415
           LL   PE R TA+Q LQHP+ 
Sbjct: 343 LLQVDPEARLTAEQALQHPFF 363

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 81.8 bits (203), Expect = 1e-17
 Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 19/154 (12%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI---QKSAAQFAQAALHEIEVLSAVADGD 93
            Y  + +LG G FS+V       T    A KI   +K +A+  Q    E  +   +    
Sbjct: 7   NYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKL---- 62

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKY 151
                 ++RL D  +          +V + +  G+    ++    Y   E        + 
Sbjct: 63  --QHPNIVRLHDSIQ----EESFHYLVFDLVTGGELFEDIVAREFYS--E-ADASHCIQQ 113

Query: 152 ILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK 185
           IL  + Y H   GI+H +LKPEN+LL S    + 
Sbjct: 114 ILESIAYCH-SNGIVHRNLKPENLLLASKAKGAA 146

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 243 KPERCL---DGIDMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 297
           KPE  L          K+ DFG A     ++ +     T  Y +PEV+ +  YS  VD+W
Sbjct: 132 KPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIW 191

Query: 298 S 298
           +
Sbjct: 192 A 192

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 395 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVE 432
           +L   P+KR TA Q L+ PW+  R         +  V+
Sbjct: 245 MLTVNPKKRITADQALKVPWICNRERVASAIHRQDTVD 282

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 19/151 (12%)

Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGDPSN 96
            +  + LG G FSI       +++   A+K I K      Q    EI  L    +G P+ 
Sbjct: 13  DLKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKRMEANTQ---KEITALKLC-EGHPN- 67

Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLL-RLIKYSRYKGLELNKVREICKYILT 154
              +++L + F     +  H  +V+E L G  L  R+ K   +   E  +   I + +++
Sbjct: 68  ---IVKLHEVFH----DQLHTFLVMELLNGGELFERIKKKKHFS--E-TEASYIMRKLVS 117

Query: 155 GLDYLHRELGIIHTDLKPENILLVSTIDPSK 185
            + ++H ++G++H DLKPEN+L     D  +
Sbjct: 118 AVSHMH-DVGVVHRDLKPENLLFTDENDNLE 147

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 55.8 bits (135), Expect = 9e-09
 Identities = 37/193 (19%), Positives = 63/193 (32%), Gaps = 55/193 (28%)

Query: 243 KPERCL---DGIDMRCKVVDFGNACR---ANKQFAEEIQTRQYRAPEVILRAGYSFSVDM 296
           KPE  L   +  ++  K++DFG A      N+       T  Y APE++ + GY  S D+
Sbjct: 133 KPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELLNQNGYDESCDL 192

Query: 297 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 356
           WS     + + +G + F        C     +                            
Sbjct: 193 WSLGVILYTMLSGQVPFQSHDRSLTCTSAVEI---------------------------- 224

Query: 357 GDLKRIRRLKF------WSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCL 410
             +K+I++  F      W            S+ +A++  + L   L   P KR       
Sbjct: 225 --MKKIKKGDFSFEGEAWK---------NVSQ-EAKDLIQGL---LTVDPNKRLKMSGLR 269

Query: 411 QHPWLSLRNSTRD 423
            + WL   +    
Sbjct: 270 YNEWLQDGSQLSS 282

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 83.6 bits (207), Expect = 2e-17
 Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 19/154 (12%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSA--AQFAQAALHEIEVLSAVADGD 93
            Y   +KLG G +  V L  D  T    A+K I+K++         L E+ VL  +   D
Sbjct: 38  MYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLL---D 94

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKY 151
             N   +++L D F+    + ++  +V+E    G+    +I   ++   E      I K 
Sbjct: 95  HPN---IMKLYDFFE----DKRNYYLVMECYKGGELFDEIIHRMKFN--E-VDAAVIIKQ 144

Query: 152 ILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK 185
           +L+G+ YLH +  I+H DLKPEN+LL S    + 
Sbjct: 145 VLSGVTYLH-KHNIVHRDLKPENLLLESKEKDAL 177

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 70.9 bits (174), Expect = 2e-13
 Identities = 47/198 (23%), Positives = 71/198 (35%), Gaps = 52/198 (26%)

Query: 243 KPERCL---DGIDMRCKVVDFGNAC--RANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 297
           KPE  L      D   K+VDFG +      K+  E + T  Y APEV LR  Y    D+W
Sbjct: 163 KPENLLLESKEKDALIKIVDFGLSAVFENQKKMKERLGTAYYIAPEV-LRKKYDEKCDVW 221

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY-FDRH 356
           S     F L  G   F  ++ Q           ++  +            +   Y FD  
Sbjct: 222 SIGVILFILLAGYPPFGGQTDQE----------ILRKV------------EKGKYTFDS- 258

Query: 357 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
                      W            SE  A+   + +  +L F  ++R +AQQ L+HPW+ 
Sbjct: 259 ---------PEWK---------NVSE-GAK---DLIKQMLQFDSQRRISAQQALEHPWIK 296

Query: 417 LRNSTRDETKNKSNVEKV 434
              S ++      ++   
Sbjct: 297 EMCSKKESGIELPSLANA 314

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 21/156 (13%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGDPS 95
            Y  +  +G G +S+        T+   A+K I KS     +    EIE+L       P+
Sbjct: 23  GYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTE----EIEILLRYG-QHPN 77

Query: 96  NEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLL-RLIKYSRYKGLELNKVREICKYIL 153
               +I L D +     +G+++ +V E + G  LL ++++   +   E  +   +   I 
Sbjct: 78  ----IITLKDVYD----DGKYVYVVTELMKGGELLDKILRQKFFS--E-REASAVLFTIT 126

Query: 154 TGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR 189
             ++YLH   G++H DLKP NIL V     + + IR
Sbjct: 127 KTVEYLH-AQGVVHRDLKPSNILYVDE-SGNPESIR 160

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 15/67 (22%)

Query: 243 KPERCL----DGIDMRCKVVDFGNACRANKQFAEEIQ-------TRQYRAPEVILRAGYS 291
           KP   L     G     ++ DFG A    KQ   E         T  + APEV+ R GY 
Sbjct: 143 KPSNILYVDESGNPESIRICDFGFA----KQLRAENGLLMTPCYTANFVAPEVLERQGYD 198

Query: 292 FSVDMWS 298
            + D+WS
Sbjct: 199 AACDIWS 205

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 395 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSN 430
           +L   P +R TA   L+HPW+   +       N+ +
Sbjct: 261 MLHVDPHQRLTAALVLRHPWIVHWDQLPQYQLNRQD 296

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 82.9 bits (205), Expect = 2e-17
 Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 13/145 (8%)

Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGDPSN 96
            +  + LG G    V   ++ RT    ALK +Q         A  E+E+         S 
Sbjct: 64  KVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRA-----SQ 113

Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTG 155
              ++R++D +++     + L +V+E L G  L   I+    +     +  EI K I   
Sbjct: 114 CPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEA 173

Query: 156 LDYLHRELGIIHTDLKPENILLVST 180
           + YLH  + I H D+KPEN+L  S 
Sbjct: 174 IQYLH-SINIAHRDVKPENLLYTSK 197

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 256 KVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 298
           K+ DFG A    ++        T  Y APEV+    Y  S DMWS
Sbjct: 204 KLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWS 248

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 48/191 (25%), Positives = 74/191 (38%), Gaps = 36/191 (18%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFA-------------EEIQTRQYRAPEVILRA- 288
           KP   L   +   KV DFG A   ++  A             E + TR YRAPEV+L + 
Sbjct: 139 KPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSA 198

Query: 289 GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI---AIG 345
            YS ++D+WS  C   EL     +F  +  +        L L+  +IG          I 
Sbjct: 199 KYSRAMDVWSCGCILAELFLRRPIFPGRDYR------HQLLLIFGIIGTPHSDNDLRCIE 252

Query: 346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT 405
             ++++Y      L          +       +        +    L  +L F P KR T
Sbjct: 253 SPRAREYIKS---LPMYPAAPLEKM-------FPRVNPKGIDL---LQRMLVFDPAKRIT 299

Query: 406 AQQCLQHPWLS 416
           A++ L+HP+L 
Sbjct: 300 AKEALEHPYLQ 310

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 70.7 bits (174), Expect = 1e-13
 Identities = 35/150 (23%), Positives = 58/150 (38%), Gaps = 25/150 (16%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQK----SAAQFAQAALHEIEVLSAVADG 92
            +  +  LG G + +V  A    T   VA+K  K        FA   L EI++L      
Sbjct: 12  DFQLKSLLGEGAYGVVCSATHKPTGEIVAIK--KIEPFDKPLFALRTLREIKILKHF--- 66

Query: 93  DPSNEKCVIRLIDHFKHAGP-NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKY 151
                + +I + +  +     N   + ++ E +   L R+I         L+      +Y
Sbjct: 67  ---KHENIITIFNIQRPDSFENFNEVYIIQELMQTDLHRVI-----STQMLSDDH--IQY 116

Query: 152 ----ILTGLDYLHRELGIIHTDLKPENILL 177
                L  +  LH    +IH DLKP N+L+
Sbjct: 117 FIYQTLRAVKVLH-GSNVIHRDLKPSNLLI 145

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 83.2 bits (206), Expect = 2e-17
 Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 19/154 (12%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKS--AAQFAQAALHEIEVLSAVADGD 93
           RY     LG G F  V    D  T    A+K I K+    +     L E+E+L  +   D
Sbjct: 23  RYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKL---D 79

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLL-RLIKYSRYKGLELNKVREICKY 151
             N   +++L +  +    +     +V E   G  L   +IK  R+   E +    I K 
Sbjct: 80  HPN---IMKLFEILE----DSSSFYIVGELYTGGELFDEIIKRKRFS--E-HDAARIIKQ 129

Query: 152 ILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK 185
           + +G+ Y+H +  I+H DLKPENILL S      
Sbjct: 130 VFSGITYMH-KHNIVHRDLKPENILLESKEKDCD 162

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 48/198 (24%), Positives = 75/198 (37%), Gaps = 52/198 (26%)

Query: 243 KPERCL---DGIDMRCKVVDFGNAC--RANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 297
           KPE  L      D   K++DFG +   + N +  + I T  Y APEV LR  Y    D+W
Sbjct: 148 KPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEV-LRGTYDEKCDVW 206

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY-FDRH 356
           S     + L +G   F  K+             +++ +            ++  Y FD  
Sbjct: 207 SAGVILYILLSGTPPFYGKNEYD----------ILKRV------------ETGKYAFDL- 243

Query: 357 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
                      W            S+ DA+   + +  +L F P  R TA QCL+HPW+ 
Sbjct: 244 ---------PQWR---------TISD-DAK---DLIRKMLTFHPSLRITATQCLEHPWIQ 281

Query: 417 LRNSTRDETKNKSNVEKV 434
             +S      +  ++E  
Sbjct: 282 KYSSETPTISDLPSLESA 299

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A Length = 296

 Score = 81.3 bits (201), Expect = 2e-17
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 12/147 (8%)

Query: 31  DLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVA 90
           +L  G RY   RK+G G F  ++L  D      VA+K++    +  Q    E ++   + 
Sbjct: 4   ELRVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQ-LHIESKIYKMMQ 62

Query: 91  DGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICK 150
            G           I   +  G  G +  MV+E LG SL  L  +   K   L  V  +  
Sbjct: 63  GGVG---------IPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCSRK-FSLKTVLLLAD 112

Query: 151 YILTGLDYLHRELGIIHTDLKPENILL 177
            +++ ++Y+H     IH D+KP+N L+
Sbjct: 113 QMISRIEYIH-SKNFIHRDVKPDNFLM 138

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 83.2 bits (206), Expect = 3e-17
 Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 24/162 (14%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGDPS 95
            Y   RKLG G +  V L  +    S  A+K I+KS  QF +    +          +  
Sbjct: 37  SYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKS--QFDKGRYSDDNKNIEKFHEEIY 94

Query: 96  NEKCVIRLIDHFKHAGPN----------GQHLCMVLEFL--GDSLLRLIKYSRYKGLELN 143
           NE  +++ +DH     PN           ++  +V EF   G+   ++I   ++   E  
Sbjct: 95  NEISLLKSLDH-----PNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINRHKFD--E-C 146

Query: 144 KVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK 185
               I K IL+G+ YLH +  I+H D+KPENILL +      
Sbjct: 147 DAANIMKQILSGICYLH-KHNIVHRDIKPENILLENKNSLLN 187

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 42/210 (20%), Positives = 75/210 (35%), Gaps = 57/210 (27%)

Query: 243 KPERCL---DGIDMRCKVVDFGNAC--RANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 297
           KPE  L       +  K+VDFG +     + +  + + T  Y APEV L+  Y+   D+W
Sbjct: 173 KPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEV-LKKKYNEKCDVW 231

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY-FDRH 356
           S     + L  G   F  ++ Q           +++ +            +   Y FD  
Sbjct: 232 SCGVIMYILLCGYPPFGGQNDQD----------IIKKV------------EKGKYYFDF- 268

Query: 357 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
                      W            S+ +A+   E +  +L +   KR TA++ L   W+ 
Sbjct: 269 ---------NDWK---------NISD-EAK---ELIKLMLTYDYNKRCTAEEALNSRWIK 306

Query: 417 LRNSTRDETKNKSNVEKVD-----VGMSKL 441
              +  +++  K+    +       G  KL
Sbjct: 307 KYANNINKSDQKTLCGALSNMRKFEGSQKL 336

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 81.6 bits (202), Expect = 3e-17
 Identities = 42/156 (26%), Positives = 62/156 (39%), Gaps = 26/156 (16%)

Query: 31  DLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI--------QKSAAQFAQAALHE 82
           D  +  RY+  R LG G F+  +   D  T    A KI             + +     E
Sbjct: 36  DPRSRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSM----E 91

Query: 83  IEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLE 141
           I +  ++        + V+     F+    +   + +VLE     SLL L K  R K L 
Sbjct: 92  ISIHRSL------AHQHVVGFHGFFE----DNDFVFVVLELCRRRSLLELHK--RRKALT 139

Query: 142 LNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
             + R   + I+ G  YLHR   +IH DLK  N+ L
Sbjct: 140 EPEARYYLRQIVLGCQYLHR-NRVIHRDLKLGNLFL 174

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 35/176 (19%), Positives = 52/176 (29%), Gaps = 53/176 (30%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR----QYRAPEVILRAGYSFSVDMWS 298
           K        D+  K+ DFG A +      E  +       Y APEV+ + G+SF VD+WS
Sbjct: 168 KLGNLFLNEDLEVKIGDFGLATKVEYD-GERKKVLCGTPNYIAPEVLSKKGHSFEVDVWS 226

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
             C  + L  G   F         E                                   
Sbjct: 227 IGCIMYTLLVGKPPF---------ETSCLKET---------------------------- 249

Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
             RI++            +Y   +      A  +  +L   P  RPT  + L   +
Sbjct: 250 YLRIKKN-----------EYSIPKHINPVAASLIQKMLQTDPTARPTINELLNDEF 294

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 80.7 bits (200), Expect = 3e-17
 Identities = 42/156 (26%), Positives = 62/156 (39%), Gaps = 26/156 (16%)

Query: 31  DLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI--------QKSAAQFAQAALHE 82
           D  +  RY+  R LG G F+  +   D  T    A KI             + +     E
Sbjct: 10  DPRSRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSM----E 65

Query: 83  IEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEF-LGDSLLRLIKYSRYKGLE 141
           I +  ++        + V+     F+    +   + +VLE     SLL L K  R K L 
Sbjct: 66  ISIHRSL------AHQHVVGFHGFFE----DNDFVFVVLELCRRRSLLELHK--RRKALT 113

Query: 142 LNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
             + R   + I+ G  YLHR   +IH DLK  N+ L
Sbjct: 114 EPEARYYLRQIVLGCQYLHR-NRVIHRDLKLGNLFL 148

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 59.5 bits (145), Expect = 4e-10
 Identities = 35/176 (19%), Positives = 53/176 (30%), Gaps = 53/176 (30%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR----QYRAPEVILRAGYSFSVDMWS 298
           K        D+  K+ DFG A +  +   E  +       Y APEV+ + G+SF VD+WS
Sbjct: 142 KLGNLFLNEDLEVKIGDFGLATKV-EYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWS 200

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
             C  + L  G   F         E                                   
Sbjct: 201 IGCIMYTLLVGKPPF---------ETSCLKET---------------------------- 223

Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
             RI++            +Y   +      A  +  +L   P  RPT  + L   +
Sbjct: 224 YLRIKKN-----------EYSIPKHINPVAASLIQKMLQTDPTARPTINELLNDEF 268

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 81.7 bits (202), Expect = 3e-17
 Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 23/154 (14%)

Query: 41  QRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGDPSNEKC 99
              LG G+F  V    +T T   +A K I+    +  +   +EI V++ +      +   
Sbjct: 94  TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQL-----DHAN- 147

Query: 100 VIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELN--KVREICKYILTG 155
           +I+L D F+    +   + +V+E++  G+   R+I     +   L         K I  G
Sbjct: 148 LIQLYDAFE----SKNDIVLVMEYVDGGELFDRIID----ESYNLTELDTILFMKQICEG 199

Query: 156 LDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR 189
           + ++H ++ I+H DLKPENIL V+        I+
Sbjct: 200 IRHMH-QMYILHLDLKPENILCVN---RDAKQIK 229

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 243 KPER--CLDGIDMRCKVVDFGNACR--ANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 298
           KPE   C++    + K++DFG A R    ++      T ++ APEV+     SF  DMWS
Sbjct: 214 KPENILCVNRDAKQIKIIDFGLARRYKPREKLKVNFGTPEFLAPEVVNYDFVSFPTDMWS 273

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 395 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNK 428
           LL      R +A + L+HPWLS        +  K
Sbjct: 326 LLIKEKSWRISASEALKHPWLSDHKLHSRLSAQK 359

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 81.6 bits (202), Expect = 3e-17
 Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 24/188 (12%)

Query: 1   MSCSSSSGSEDDDEGIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRT 60
           MS  ++S +      +  Y   G +   + D      +  + +LG G  SIV+      T
Sbjct: 23  MSSVTASAAPGTASLVPDYWIDGSNRDALSD-----FFEVESELGRGATSIVYRCKQKGT 77

Query: 61  SSYVALK-IQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCM 119
               ALK ++K+  +  +    EI VL  +      +   +I+L + F+        + +
Sbjct: 78  QKPYALKVLKKTVDK--KIVRTEIGVLLRL------SHPNIIKLKEIFE----TPTEISL 125

Query: 120 VLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
           VLE +  G+   R+++   Y   E     +  K IL  + YLH E GI+H DLKPEN+L 
Sbjct: 126 VLELVTGGELFDRIVEKGYYS--E-RDAADAVKQILEAVAYLH-ENGIVHRDLKPENLLY 181

Query: 178 VSTIDPSK 185
            +    + 
Sbjct: 182 ATPAPDAP 189

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 243 KPERCL---DGIDMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 297
           KPE  L      D   K+ DFG +              T  Y APE++    Y   VDMW
Sbjct: 175 KPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDMW 234

Query: 298 S 298
           S
Sbjct: 235 S 235

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 13/47 (27%), Positives = 20/47 (42%)

Query: 395 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEKVDVGMSKL 441
           L+   P+KR T  Q LQHPW++ + +            +      KL
Sbjct: 289 LIVLDPKKRLTTFQALQHPWVTGKAANFVHMDTAQKKLQEFNARRKL 335

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 81.6 bits (202), Expect = 4e-17
 Identities = 35/159 (22%), Positives = 59/159 (37%), Gaps = 22/159 (13%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI------QKSAAQFAQAALHEIEVLSAVA 90
            Y     +G G FS+V    +  T    A+KI        S     +    E  +   + 
Sbjct: 25  VYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHML- 83

Query: 91  DGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGL--ELNKVR 146
                    ++ L++ +     +   L MV EF+   D    ++K +    +  E     
Sbjct: 84  -----KHPHIVELLETYS----SDGMLYMVFEFMDGADLCFEIVKRADAGFVYSE-AVAS 133

Query: 147 EICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK 185
              + IL  L Y H +  IIH D+KP  +LL S  + + 
Sbjct: 134 HYMRQILEALRYCH-DNNIIHRDVKPHCVLLASKENSAP 171

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 6/62 (9%)

Query: 243 KPERCL---DGIDMRCKVVDFGNAC---RANKQFAEEIQTRQYRAPEVILRAGYSFSVDM 296
           KP   L          K+  FG A     +       + T  + APEV+ R  Y   VD+
Sbjct: 157 KPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDV 216

Query: 297 WS 298
           W 
Sbjct: 217 WG 218

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 395 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEK 433
           +L   P +R T  + L HPWL  R+    +      VE+
Sbjct: 270 MLMLDPAERITVYEALNHPWLKERDRYAYKIHLPETVEQ 308

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 81.6 bits (202), Expect = 4e-17
 Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 19/154 (12%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI---QKSAAQFAQAALHEIEVLSAVADGD 93
            Y  + +LG G FS+V       T    A KI   +K +A+  Q    E  +   +    
Sbjct: 30  NYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKL---- 85

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKY 151
                 ++RL D  +          +V + +  G+    ++    Y   E        + 
Sbjct: 86  --QHPNIVRLHDSIQ----EESFHYLVFDLVTGGELFEDIVAREFYS--E-ADASHCIQQ 136

Query: 152 ILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK 185
           IL  + Y H   GI+H +LKPEN+LL S    + 
Sbjct: 137 ILESIAYCH-SNGIVHRNLKPENLLLASKAKGAA 169

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 243 KPERCL---DGIDMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 297
           KPE  L          K+ DFG A     ++ +     T  Y +PEV+ +  YS  VD+W
Sbjct: 155 KPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIW 214

Query: 298 S 298
           +
Sbjct: 215 A 215

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 395 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEKVD--VGMSKL 441
           +L   P+KR TA Q L+ PW+  R         +  V+ +       KL
Sbjct: 268 MLTVNPKKRITADQALKVPWICNRERVASAIHRQDTVDCLKKFNARRKL 316

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 81.6 bits (201), Expect = 4e-17
 Identities = 35/160 (21%), Positives = 57/160 (35%), Gaps = 21/160 (13%)

Query: 37  RYIAQRKLGWGQFSIVWLAY-----DTRTSSYVALKIQKSAAQF-AQAALHEIEVLSAVA 90
                  LG G F+ V+ A      D +      LK+QK A  +        +E L    
Sbjct: 66  LVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERL---- 121

Query: 91  DGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLI---KYSRYKGLELNKVR 146
              PS +   ++                +V E     +LL  I   K +  K +    V 
Sbjct: 122 --KPSMQHMFMKFYSAHLFQ----NGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVI 175

Query: 147 EICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKD 186
                +L  ++ +H +  IIH D+KP+N +L +      D
Sbjct: 176 SFAMRMLYMIEQVH-DCEIIHGDIKPDNFILGNGFLEQDD 214

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 62.7 bits (152), Expect = 6e-11
 Identities = 13/93 (13%), Positives = 33/93 (35%), Gaps = 16/93 (17%)

Query: 243 KPERCL-----------DGIDMRCKVVDFGNAC-----RANKQFAEEIQTRQYRAPEVIL 286
           KP+  +           D +     ++D G +           F  + +T  ++  E++ 
Sbjct: 199 KPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLS 258

Query: 287 RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQ 319
              +++ +D +  A T + +  G  +     G 
Sbjct: 259 NKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGG 291

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 82.6 bits (204), Expect = 4e-17
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 17/157 (10%)

Query: 26  AVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSS-YVALKIQKSA--AQFAQAALHE 82
            +  GD+   G+Y  +  +  G    ++LA D   +   V LK    +  A+    A+ E
Sbjct: 71  QLNPGDIV-AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAE 129

Query: 83  IEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLC-MVLEFL-GDSLLRLIKYSRYKGL 140
            + L+ V    PS    ++++ +  +H   +G  +  +V+E++ G SL R       + L
Sbjct: 130 RQFLAEVVH--PS----IVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKG----QKL 179

Query: 141 ELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
            + +       IL  L YLH   G+++ DLKPENI+L
Sbjct: 180 PVAEAIAYLLEILPALSYLHSI-GLVYNDLKPENIML 215

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 254 RCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATG 309
           + K++D G        F     T  ++APE++ R G + + D+++   T   L   
Sbjct: 219 QLKLIDLGAV-SRINSFGYLYGTPGFQAPEIV-RTGPTVATDIYTVGRTLAALTLD 272

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 80.8 bits (200), Expect = 5e-17
 Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 14/140 (10%)

Query: 43  KLGWGQFSIVWLAYDTRTSSYVALKI--QKSAAQFAQAALHEIEVLSAVADGDPSNEKCV 100
           ++G G +  V       +   +A+K        +  +  L +++V+              
Sbjct: 29  EIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVV---------MRSSD 79

Query: 101 IRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKY---SRYKGLELNKVREICKYILTGLD 157
              I  F  A        + +E +  S  +  KY        +    + +I    +  L+
Sbjct: 80  CPYIVQFYGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALN 139

Query: 158 YLHRELGIIHTDLKPENILL 177
           +L   L IIH D+KP NILL
Sbjct: 140 HLKENLKIIHRDIKPSNILL 159

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 35/166 (21%), Positives = 59/166 (35%), Gaps = 48/166 (28%)

Query: 256 KVVDFGNACRANKQFAE--EIQTRQYRAPEVI----LRAGYSFSVDMWSFACTAFELATG 309
           K+ DFG + +     A+  +   R Y APE I     R GY    D+WS   T +ELATG
Sbjct: 166 KLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATG 225

Query: 310 DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWS 369
              +   +             + + + ++ +                       +L    
Sbjct: 226 RFPYPKWNS------------VFDQLTQVVKGDPP-------------------QLSN-- 252

Query: 370 LDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
                 ++  FS      F  F+   L     KRP  ++ L+HP++
Sbjct: 253 -----SEEREFSP----SFINFVNLCLTKDESKRPKYKELLKHPFI 289

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 81.2 bits (200), Expect = 5e-17
 Identities = 18/168 (10%), Positives = 46/168 (27%), Gaps = 30/168 (17%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI----QKSAAQFAQAALHEIEVLSAVADG 92
           +      L  G  S+V+L  D       ALK+     +++    +         + +   
Sbjct: 63  KLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGE 122

Query: 93  DP------------------SNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKY 134
            P                   ++    +L            +  +++      L  L   
Sbjct: 123 SPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDD--YAVANYLLLMPAASVDLELLFST 180

Query: 135 SRYKG-----LELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
             +         +  +  +   ++     L    G++H    P+N+ +
Sbjct: 181 LDFVYVFRGDEGILALHILTAQLIRLAANLQS-KGLVHGHFTPDNLFI 227

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 76.2 bits (187), Expect = 3e-15
 Identities = 16/175 (9%), Positives = 39/175 (22%), Gaps = 41/175 (23%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR--AGYSFSVDMWSFA 300
            P+      D R  + D     +   +         Y   E +    A ++ +++ W   
Sbjct: 221 TPDNLFIMPDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLG 280

Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
            + + +    + F   +                                       G  K
Sbjct: 281 LSIYRVWCLFLPFGLVTP-----------------------------------GIKGSWK 305

Query: 361 RIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
           R       +            +         +   L+F   +R    + ++ P  
Sbjct: 306 RPSLRVPGTDSLAFGSCTPLPD----FVKTLIGRFLNFDRRRRLLPLEAMETPEF 356

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} Length = 483

 Score = 82.0 bits (202), Expect = 6e-17
 Identities = 35/147 (23%), Positives = 71/147 (48%), Gaps = 12/147 (8%)

Query: 31  DLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVA 90
           +   G ++   RK+G G F  ++L  + +T+  VA+K++    +  Q  L+E ++   + 
Sbjct: 2   EPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQ-LLYESKIYRILQ 60

Query: 91  DGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICK 150
            G           I + +  G  G +  +V++ LG SL  L  +   K L L  V  +  
Sbjct: 61  GGT---------GIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRK-LSLKTVLMLAD 110

Query: 151 YILTGLDYLHRELGIIHTDLKPENILL 177
            ++  ++++H +   +H D+KP+N L+
Sbjct: 111 QMINRVEFVHSK-SFLHRDIKPDNFLM 136

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 80.0 bits (198), Expect = 6e-17
 Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 32/166 (19%)

Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI------QKSAAQFAQAALHEIEVLSAV 89
            +Y  + ++G G + +V LAY+   ++Y A+K+       + A    +            
Sbjct: 13  NQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGG 72

Query: 90  ADGDPSNEKCVIR------LIDHFKH--------AGPNGQHLCMVLEFL-GDSLLRLIKY 134
                   + V +       +DH  +          PN  HL MV E +    ++ +   
Sbjct: 73  CIQPRGPIEQVYQEIAILKKLDH-PNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL 131

Query: 135 SRYKGLELNKVREICKY---ILTGLDYLHRELGIIHTDLKPENILL 177
                       +   Y   ++ G++YLH    IIH D+KP N+L+
Sbjct: 132 KPL------SEDQARFYFQDLIKGIEYLHY-QKIIHRDIKPSNLLV 170

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 38/182 (20%), Positives = 58/182 (31%), Gaps = 58/182 (31%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ------YRAPEVI--LRAGYS-FS 293
           KP   L G D   K+ DFG    +N+    +           + APE +   R  +S  +
Sbjct: 164 KPSNLLVGEDGHIKIADFG---VSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKA 220

Query: 294 VDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF 353
           +D+W+   T +    G   F          DE  + L          KI     +  D  
Sbjct: 221 LDVWAMGVTLYCFVFGQCPF---------MDERIMCLH--------SKIKSQALEFPDQP 263

Query: 354 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP 413
           D   DLK +       + R+L         +               PE R    +   HP
Sbjct: 264 DIAEDLKDL-------ITRMLD-------KN---------------PESRIVVPEIKLHP 294

Query: 414 WL 415
           W+
Sbjct: 295 WV 296

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} Length = 345

 Score = 79.8 bits (197), Expect = 1e-16
 Identities = 35/156 (22%), Positives = 66/156 (42%), Gaps = 12/156 (7%)

Query: 31  DLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVA 90
           D   G +++  +K+G G F +++LA+ T      A  + K   Q       E++    VA
Sbjct: 32  DDMEGNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVA 91

Query: 91  DGDPSNEKCVIRLIDHF---------KHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLE 141
             D   +    + +D+                  +  MV+E LG  L ++   +     +
Sbjct: 92  KKDCIKKWIERKQLDYLGIPLFYGSGLTEFKGRSYRFMVMERLGIDLQKISGQNG--TFK 149

Query: 142 LNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
            + V ++   +L  L+Y+H E   +H D+K  N+LL
Sbjct: 150 KSTVLQLGIRMLDVLEYIH-ENEYVHGDIKAANLLL 184

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 19/154 (12%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI---QKSAAQFAQAALHEIEVLSAVADGD 93
            Y    +LG G FS+V            A  I   +K +A+  Q    E  +   +    
Sbjct: 12  EYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLL---- 67

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKY 151
                 ++RL D          H  ++ + +  G+    ++    Y   E        + 
Sbjct: 68  --KHPNIVRLHDSIS----EEGHHYLIFDLVTGGELFEDIVAREYYS--E-ADASHCIQQ 118

Query: 152 ILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK 185
           IL  + + H ++G++H +LKPEN+LL S +  + 
Sbjct: 119 ILEAVLHCH-QMGVVHRNLKPENLLLASKLKGAA 151

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 395 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVE--KVDVGMSKL 441
           +L   P KR TA + L+HPW+S R++       +  V+  K      KL
Sbjct: 251 MLTINPSKRITAAEALKHPWISHRSTVASCMHRQETVDCLKKFNARRKL 299

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 243 KPERCL---DGIDMRCKVVDFGNACR---ANKQFAEEIQTRQYRAPEVILRAGYSFSVDM 296
           KPE  L          K+ DFG A       + +     T  Y +PEV+ +  Y   VD+
Sbjct: 137 KPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDL 196

Query: 297 WS 298
           W+
Sbjct: 197 WA 198

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 78.8 bits (195), Expect = 2e-16
 Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 14/147 (9%)

Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI-QKSAAQFAQAALH----EIEVLSAVA 90
           G+Y+    LG G +  V    D+ T    A+KI +K   +           EI++L  + 
Sbjct: 5   GKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRL- 63

Query: 91  DGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICK 150
                  K VI+L+D   +     Q + MV+E+    +  ++     K   + +      
Sbjct: 64  -----RHKNVIQLVDVLYNEEK--QKMYMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFC 116

Query: 151 YILTGLDYLHRELGIIHTDLKPENILL 177
            ++ GL+YLH   GI+H D+KP N+LL
Sbjct: 117 QLIDGLEYLHS-QGIVHKDIKPGNLLL 142

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 34/181 (18%), Positives = 56/181 (30%), Gaps = 57/181 (31%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEI-QTRQ----YRAPEVIL-RAGYS-FSVD 295
           KP   L       K+   G A   +   A++  +T Q    ++ PE+      +S F VD
Sbjct: 136 KPGNLLLTTGGTLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVD 195

Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WS   T + + TG   F          + D++        K+   I  G          
Sbjct: 196 IWSAGVTLYNITTGLYPF----------EGDNIY-------KLFENIGKGSYAIPGDCGP 238

Query: 356 HGDLKR-IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
              L   ++ +       L  +                       P KR + +Q  QH W
Sbjct: 239 --PLSDLLKGM-------LEYE-----------------------PAKRFSIRQIRQHSW 266

Query: 415 L 415
            
Sbjct: 267 F 267

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 13/143 (9%)

Query: 39  IAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGDPSNE 97
           ++++ LG G    V   +  RT    ALK +  S       A  E++          S  
Sbjct: 32  LSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS-----PKARQEVDHHWQA-----SGG 81

Query: 98  KCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGL 156
             ++ ++D +++     + L +++E + G  L   I+    +     +  EI + I T +
Sbjct: 82  PHIVCILDVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAI 141

Query: 157 DYLHRELGIIHTDLKPENILLVS 179
            +LH    I H D+KPEN+L  S
Sbjct: 142 QFLH-SHNIAHRDVKPENLLYTS 163

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 243 KPERCL---DGIDMRCKVVDFGNA-CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 298
           KPE  L      D   K+ DFG A             T  Y APEV+    Y  S DMWS
Sbjct: 155 KPENLLYTSKEKDAVLKLTDFGFAKETTQNALQTPCYTPYYVAPEVLGPEKYDKSCDMWS 214

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 80.0 bits (197), Expect = 2e-16
 Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 15/137 (10%)

Query: 45  GWGQFSIVWLAYDTRTSSYVALKI---QKSAAQFAQAALHEIEVLSAVADGDPSNEKCVI 101
           G+     V LA    T  YV ++    +  + +       E+ V          N   ++
Sbjct: 36  GFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKL------FNHPNIV 89

Query: 102 RLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLH 160
                F         L +V  F+   S   LI      G+    +  I + +L  LDY+H
Sbjct: 90  PYRATFIA----DNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIH 145

Query: 161 RELGIIHTDLKPENILL 177
              G +H  +K  +IL+
Sbjct: 146 HM-GYVHRSVKASHILI 161

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 71.9 bits (176), Expect = 8e-14
 Identities = 33/184 (17%), Positives = 55/184 (29%), Gaps = 34/184 (18%)

Query: 254 RCKVVDFGNACRANKQFAEEIQTRQYR--------------APEVILR--AGYSFSVDMW 297
           +  +    +            Q ++                +PEV+ +   GY    D++
Sbjct: 166 KVYLSGLRSNL----SMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIY 221

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPR------KIAIGGAQSKD 351
           S   TA ELA G     P     F +      L+ +L G +P         A     S  
Sbjct: 222 SVGITACELANGH---VP-----FKDMPATQMLLEKLNGTVPCLLDTSTIPAEELTMSPS 273

Query: 352 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ 411
               +  L                  + +  T +  F  F+   L   P+ RP+A   L 
Sbjct: 274 RSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLN 333

Query: 412 HPWL 415
           H + 
Sbjct: 334 HSFF 337

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 78.5 bits (194), Expect = 2e-16
 Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 46/187 (24%)

Query: 5   SSSGSEDDDEGIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYV 64
           S   +E+ D   D               +       +  LG G + IV+   D      +
Sbjct: 1   SMRSTEEGDCESDLLEYD----------YEYDENGDRVVLGKGTYGIVYAGRDLSNQVRI 50

Query: 65  ALK-IQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN---------- 113
           A+K I +  ++++Q    EI +                    H KH   N          
Sbjct: 51  AIKEIPERDSRYSQPLHEEIALHK------------------HLKH--KNIVQYLGSFSE 90

Query: 114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNK--VREICKYILTGLDYLHRELGIIHTDL 170
              + + +E + G SL  L++ S++  L+ N+  +    K IL GL YLH    I+H D+
Sbjct: 91  NGFIKIFMEQVPGGSLSALLR-SKWGPLKDNEQTIGFYTKQILEGLKYLHDN-QIVHRDI 148

Query: 171 KPENILL 177
           K +N+L+
Sbjct: 149 KGDNVLI 155

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 248 LDGIDMRCKVVDFGNACRANKQFAEEIQ---TRQYRAPEVILRA--GYSFSVDMWSFACT 302
           ++      K+ DFG + R             T QY APE+I +   GY  + D+WS  CT
Sbjct: 155 INTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCT 214

Query: 303 AFELATG 309
             E+ATG
Sbjct: 215 IIEMATG 221

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 78.5 bits (194), Expect = 2e-16
 Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 22/151 (14%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI---QKSAAQFAQAALHEIEVLSAVADGD 93
            Y  Q  +G G  ++V  AY       VA+K    +K         L EI+ +S      
Sbjct: 16  DYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSM-DELLKEIQAMSQ----- 69

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVRE----- 147
             +   ++     F         L +V++ L G S+L +IK+   KG   + V +     
Sbjct: 70  -CHHPNIVSYYTSFVV----KDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIA 124

Query: 148 -ICKYILTGLDYLHRELGIIHTDLKPENILL 177
            I + +L GL+YLH+  G IH D+K  NILL
Sbjct: 125 TILREVLEGLEYLHKN-GQIHRDVKAGNILL 154

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 43/170 (25%), Positives = 63/170 (37%), Gaps = 49/170 (28%)

Query: 256 KVVDFG-NACRANKQFAEEIQTRQ-------YRAPEVILRA-GYSFSVDMWSFACTAFEL 306
           ++ DFG +A  A        + R+       + APEV+ +  GY F  D+WSF  TA EL
Sbjct: 161 QIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIEL 220

Query: 307 ATGDMLFAPKSGQGFCEDEDHL-ALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRL 365
           ATG    AP            +  LM+ L    P                   ++    L
Sbjct: 221 ATGA---APYH------KYPPMKVLMLTLQNDPPS--------------LETGVQDKEML 257

Query: 366 KFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
           K +                 + F + +   L   PEKRPTA + L+H + 
Sbjct: 258 KKYG----------------KSFRKMISLCLQKDPEKRPTAAELLRHKFF 291

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 79.0 bits (195), Expect = 3e-16
 Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 16/145 (11%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI----QKSAAQFAQAALHEIEVLSAVADG 92
            +   R++G G F  V+ A D R S  VA+K      K + +  Q  + E+  L      
Sbjct: 55  LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQK---- 110

Query: 93  DPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYI 152
                   I+    +           +V+E+   S   L++  + K L+  ++  +    
Sbjct: 111 --LRHPNTIQYRGCYLR----EHTAWLVMEYCLGSASDLLEVHK-KPLQEVEIAAVTHGA 163

Query: 153 LTGLDYLHRELGIIHTDLKPENILL 177
           L GL YLH    +IH D+K  NILL
Sbjct: 164 LQGLAYLHSH-NMIHRDVKAGNILL 187

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 8/62 (12%)

Query: 254 RCKVVDFGNACRANKQ--FAEEIQTRQYRAPEVIL---RAGYSFSVDMWSFACTAFELAT 308
             K+ DFG+A        F   + T  + APEVIL      Y   VD+WS   T  ELA 
Sbjct: 192 LVKLGDFGSASIMAPANSF---VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE 248

Query: 309 GD 310
             
Sbjct: 249 RK 250

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 79.1 bits (195), Expect = 3e-16
 Identities = 30/143 (20%), Positives = 61/143 (42%), Gaps = 15/143 (10%)

Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKI--QKSAAQFAQAALHEIEVLSAVADGDPS 95
           +    +LG G   +V+      +   +A K+   +         + E++VL         
Sbjct: 35  FEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLH-------- 86

Query: 96  NEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILT 154
             +C    I  F  A  +   + + +E + G SL +++K  +   +    + ++   ++ 
Sbjct: 87  --ECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK--KAGRIPEQILGKVSIAVIK 142

Query: 155 GLDYLHRELGIIHTDLKPENILL 177
           GL YL  +  I+H D+KP NIL+
Sbjct: 143 GLTYLREKHKIMHRDVKPSNILV 165

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 72.2 bits (177), Expect = 5e-14
 Identities = 34/168 (20%), Positives = 60/168 (35%), Gaps = 17/168 (10%)

Query: 255 CKVVDFGNACRANKQFAEE-IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLF 313
            K+ DFG + +     A   + TR Y +PE +    YS   D+WS   +  E+A G    
Sbjct: 171 IKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPI 230

Query: 314 APKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRL 373
            P       + ++   +    +     +            ++ G   R     F  LD +
Sbjct: 231 PP------PDAKELELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDYI 284

Query: 374 ------LVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
                  +    FS     EF +F+   L   P +R   +Q + H ++
Sbjct: 285 VNEPPPKLPSGVFSL----EFQDFVNKCLIKNPAERADLKQLMVHAFI 328

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 78.1 bits (193), Expect = 3e-16
 Identities = 27/139 (19%), Positives = 60/139 (43%), Gaps = 13/139 (9%)

Query: 43  KLGWGQFSIVWLAYDTRTSSYVALKI--QKSAAQFAQAALHEIEVLSAVADGDPSNEKCV 100
           +LG G + +V       +   +A+K       +Q  +  L ++++          +    
Sbjct: 14  ELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRT-----VDCPFT 68

Query: 101 IRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIK--YSRYKGLELNKVREICKYILTGLDY 158
           +     F  A      + + +E +  SL +  K    + + +  + + +I   I+  L++
Sbjct: 69  VT----FYGALFREGDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEH 124

Query: 159 LHRELGIIHTDLKPENILL 177
           LH +L +IH D+KP N+L+
Sbjct: 125 LHSKLSVIHRDVKPSNVLI 143

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 47.2 bits (113), Expect = 4e-06
 Identities = 38/166 (22%), Positives = 59/166 (35%), Gaps = 51/166 (30%)

Query: 256 KVVDFGNACRANKQFAEE--IQTRQYRAPEVIL----RAGYSFSVDMWSFACTAFELATG 309
           K+ DFG +       A++     + Y APE I     + GYS   D+WS   T  ELA  
Sbjct: 150 KMCDFGISGYLVDDVAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELA-- 207

Query: 310 DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWS 369
                                    I + P            Y       ++++++    
Sbjct: 208 -------------------------ILRFP------------YDSWGTPFQQLKQVVEEP 230

Query: 370 LDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
             +L  DK  FS     EF +F    L    ++RPT  + +QHP+ 
Sbjct: 231 SPQLPADK--FSA----EFVDFTSQCLKKNSKERPTYPELMQHPFF 270

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* Length = 298

 Score = 78.2 bits (193), Expect = 3e-16
 Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 12/143 (8%)

Query: 35  GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDP 94
           G  Y   R++G G F +++   +   +  VA+K +   +   Q    E      +A    
Sbjct: 9   GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQ-LRDEYRTYKLLAGCTG 67

Query: 95  SNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILT 154
                    I +  + G  G H  +V++ LG SL  L+     K   +  V    K +L 
Sbjct: 68  ---------IPNVYYFGQEGLHNVLVIDLLGPSLEDLLDLCGRK-FSVKTVAMAAKQMLA 117

Query: 155 GLDYLHRELGIIHTDLKPENILL 177
            +  +H E  +++ D+KP+N L+
Sbjct: 118 RVQSIH-EKSLVYRDIKPDNFLI 139

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 78.6 bits (194), Expect = 4e-16
 Identities = 31/167 (18%), Positives = 64/167 (38%), Gaps = 37/167 (22%)

Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI-QKSAAQFAQAALH------------- 81
             Y   R L  G+F+ + L    + + + ALK  +KS  +  +                 
Sbjct: 31  NDYRIIRTLNQGKFNKIILC--EKDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYD 88

Query: 82  ----EIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLI---- 132
               E+++++ +        +  +           N   + ++ E++  DS+L+      
Sbjct: 89  DFKNELQIITDI------KNEYCLTCEGIIT----NYDEVYIIYEYMENDSILKFDEYFF 138

Query: 133 --KYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
               +    + +  ++ I K +L    Y+H E  I H D+KP NIL+
Sbjct: 139 VLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILM 185

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 34/204 (16%), Positives = 64/204 (31%), Gaps = 49/204 (24%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR----QYRAPEVILRAG--YSFSVDM 296
           KP   L   + R K+ DFG    +     ++I+      ++  PE            VD+
Sbjct: 179 KPSNILMDKNGRVKLSDFG---ESEYMVDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDI 235

Query: 297 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 356
           WS     + +        P     F      + L           I            R 
Sbjct: 236 WSLGICLYVMFYN---VVP-----FSLKISLVELF--------NNI------------RT 267

Query: 357 GDLK---RIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP 413
            +++         +   ++       F   +  +F   L   L   P +R T++  L+H 
Sbjct: 268 KNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDF---LKLFLRKNPAERITSEDALKHE 324

Query: 414 WLS------LRNSTRDETKNKSNV 431
           WL+      LR  +++  K +  +
Sbjct: 325 WLADTNIEDLREFSKELYKKRKKL 348

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 77.6 bits (192), Expect = 5e-16
 Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 35/167 (20%)

Query: 256 KVVDFGNACRA---NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDML 312
           K+ DFG A R           + T  YRAPEV+L++ Y+  VDMWS  C   E+     L
Sbjct: 160 KLADFGLA-RIYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPL 218

Query: 313 FAPKSGQGFCEDEDHLALMMELIG-----KMPRKIAIGGAQSKDYFDRHGDLKRIRRLKF 367
           F   S      + D L  + +LIG       PR +++              ++ +     
Sbjct: 219 FCGNS------EADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPR--GPRPVQSV----V 266

Query: 368 WSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
             ++                    L+ +L F P KR +A + LQH +
Sbjct: 267 PEMEESGAQ--------------LLLEMLTFNPHKRISAFRALQHSY 299

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 76.1 bits (188), Expect = 1e-15
 Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 13/149 (8%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQK------SAAQFAQAALHEIEVLSAVA 90
           RY    ++G G +  V+ A D  +  +VALK  +             + + E+ +L  + 
Sbjct: 10  RYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLE 69

Query: 91  DGDPSNEKCVIRLID--HFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREI 148
             +  N   V+RL+D           + + +V E +   L   +  +   GL    ++++
Sbjct: 70  AFEHPN---VVRLMDVCATSRTDREIK-VTLVFEHVDQDLRTYLDKAPPPGLPAETIKDL 125

Query: 149 CKYILTGLDYLHRELGIIHTDLKPENILL 177
            +  L GLD+LH    I+H DLKPENIL+
Sbjct: 126 MRQFLRGLDFLHAN-CIVHRDLKPENILV 153

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 77.7 bits (192), Expect = 6e-16
 Identities = 52/177 (29%), Positives = 75/177 (42%), Gaps = 46/177 (25%)

Query: 256 KVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGD 310
           K+ DFG A RA     +QF  EI T  YR PE++L +  YS SVD+WS AC   E+    
Sbjct: 177 KIGDFGLA-RAFGIPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKT 235

Query: 311 MLFAPKSGQGFCEDEDHLALMMELIG-----------KMPRKIAIGGAQSKDYFDRHGDL 359
            LF   S      + D L  + E++G            +P          K  F +    
Sbjct: 236 PLFPGDS------EIDQLFKIFEVLGLPDDTTWPGVTALP--------DWKQSFPKF-RG 280

Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
           K ++R+    LD   +D               L  +L+  P KR +A+  L+HP+ S
Sbjct: 281 KTLKRVLGALLDDEGLD--------------LLTAMLEMDPVKRISAKNALEHPYFS 323

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 32/144 (22%), Positives = 64/144 (44%), Gaps = 16/144 (11%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADGD 93
           RY    KLG G +  V+ A DT T+  VA+K   ++         A+ E+ +L  +    
Sbjct: 35  RYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKEL---- 90

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYIL 153
               + +I L         +   L ++ E+  + L + +   +   + +  ++     ++
Sbjct: 91  --QHRNIIELKSVI----HHNHRLHLIFEYAENDLKKYM--DKNPDVSMRVIKSFLYQLI 142

Query: 154 TGLDYLHRELGIIHTDLKPENILL 177
            G+++ H     +H DLKP+N+LL
Sbjct: 143 NGVNFCHSR-RCLHRDLKPQNLLL 165

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 77.4 bits (191), Expect = 6e-16
 Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 12/142 (8%)

Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKI--QKSAAQFAQAALHEIEVLSAVADGDPS 95
                ++G G    VW     +T   +A+K   +    +  +  L +++V+         
Sbjct: 27  LENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVV--------- 77

Query: 96  NEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTG 155
            +      I            + + +E +G    +L K      +    + ++   I+  
Sbjct: 78  LKSHDCPYIVQCFGTFITNTDVFIAMELMGTCAEKLKKR-MQGPIPERILGKMTVAIVKA 136

Query: 156 LDYLHRELGIIHTDLKPENILL 177
           L YL  + G+IH D+KP NILL
Sbjct: 137 LYYLKEKHGVIHRDVKPSNILL 158

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 55.8 bits (135), Expect = 9e-09
 Identities = 31/168 (18%), Positives = 50/168 (29%), Gaps = 51/168 (30%)

Query: 255 CKVVDFGNACRANKQFAE--EIQTRQYRAPEVI-----LRAGYSFSVDMWSFACTAFELA 307
            K+ DFG + R     A+        Y APE I      +  Y    D+WS   +  ELA
Sbjct: 164 IKLCDFGISGRLVDDKAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELA 223

Query: 308 TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKF 367
           TG   +                   E++ K+                   +   +     
Sbjct: 224 TGQFPYKNCKT------------DFEVLTKVL----------------QEEPPLLPGHMG 255

Query: 368 WSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
           +S                 +F  F+   L     KRP   + L+H ++
Sbjct: 256 FS----------------GDFQSFVKDCLTKDHRKRPKYNKLLEHSFI 287

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 77.6 bits (191), Expect = 8e-16
 Identities = 34/188 (18%), Positives = 70/188 (37%), Gaps = 56/188 (29%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI------QKSAAQFAQAALHEIEVLSAVA 90
           +Y  +  +G G + +V +A + +T +  A+KI      ++   +  +    E+ ++  + 
Sbjct: 27  KYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKL- 85

Query: 91  DGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELN----- 143
                +   + RL + ++    + Q++C+V+E    G  L +L  +      +       
Sbjct: 86  -----HHPNIARLYEVYE----DEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVK 136

Query: 144 --------------------------------KVREICKYILTGLDYLHRELGIIHTDLK 171
                                            +  I + I + L YLH   GI H D+K
Sbjct: 137 TQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLH-NQGICHRDIK 195

Query: 172 PENILLVS 179
           PEN L  +
Sbjct: 196 PENFLFST 203

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 58.7 bits (142), Expect = 1e-09
 Identities = 39/203 (19%), Positives = 61/203 (30%), Gaps = 64/203 (31%)

Query: 243 KPERCL--DGIDMRCKVVDFGNACRANKQFAEEIQ-------TRQYRAPEVILRAG--YS 291
           KPE  L         K+VDFG +    K    E         T  + APEV+      Y 
Sbjct: 195 KPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYG 254

Query: 292 FSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD 351
              D WS       L  G + F            +    +         ++       K 
Sbjct: 255 PKCDAWSAGVLLHLLLMGAVPF---------PGVNDADTI--------SQVLNK----KL 293

Query: 352 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ 411
            F+             ++           S   AR+    L  LL+   ++R  A + LQ
Sbjct: 294 CFEN----------PNYN---------VLSP-LARDL---LSNLLNRNVDERFDAMRALQ 330

Query: 412 HPWLSLRNSTRDETKNKSNVEKV 434
           HPW+         ++    + K+
Sbjct: 331 HPWI---------SQFSDKIYKM 344

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 76.6 bits (189), Expect = 9e-16
 Identities = 35/143 (24%), Positives = 72/143 (50%), Gaps = 14/143 (9%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGDPS 95
            +    +LG G F  V+ A +  T +  A K I+  + +  +  + EIE+L+        
Sbjct: 20  VWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILAT------C 73

Query: 96  NEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILT 154
           +   +++L+  + H       L +++EF  G ++  ++     +GL   +++ +C+ +L 
Sbjct: 74  DHPYIVKLLGAYYH----DGKLWIMIEFCPGGAVDAIMLELD-RGLTEPQIQVVCRQMLE 128

Query: 155 GLDYLHRELGIIHTDLKPENILL 177
            L++LH +  IIH DLK  N+L+
Sbjct: 129 ALNFLHSK-RIIHRDLKAGNVLM 150

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 22/71 (30%)

Query: 255 CKVVDFGNACRANKQFAEEIQTRQYR----------APEVILR-----AGYSFSVDMWSF 299
            ++ DFG +       A+ ++T Q R          APEV++        Y +  D+WS 
Sbjct: 156 IRLADFGVS-------AKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSL 208

Query: 300 ACTAFELATGD 310
             T  E+A  +
Sbjct: 209 GITLIEMAQIE 219

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 4/43 (9%)

Query: 374 LVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
           L+   ++S     EF +FL   LD  PE RP+A Q L+HP++S
Sbjct: 242 LLTPSKWS----VEFRDFLKIALDKNPETRPSAAQLLEHPFVS 280

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 77.9 bits (192), Expect = 1e-15
 Identities = 43/210 (20%), Positives = 71/210 (33%), Gaps = 41/210 (19%)

Query: 235 SMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRA-GYSFS 293
           ++   E    +  +   +    +V F +     +Q    + TR YRAPE+IL    Y+ +
Sbjct: 205 TVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEA 264

Query: 294 VDMWSFACTAFELATGDMLFAPKSGQG-------------------------FCEDEDHL 328
           +D+WS  C   EL                                          + D L
Sbjct: 265 IDVWSIGCIFAELLNMIKENVAYHADRGPLFPGSSCFPLSPDQKAGNDFKFHTRGNRDQL 324

Query: 329 ALMMELIGKMPRKI--AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAR 386
            ++  ++G    +   A+    +K Y         IR          L +++  S  DA 
Sbjct: 325 NVIFNILGTPSEEDIEALEKEDAKRY---------IRIFPKRE-GTDLAERFPASSADAI 374

Query: 387 EFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
                L  +L F P KR T  +CL HP+  
Sbjct: 375 HL---LKRMLVFNPNKRITINECLAHPFFK 401

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 77.6 bits (191), Expect = 1e-15
 Identities = 44/183 (24%), Positives = 68/183 (37%), Gaps = 22/183 (12%)

Query: 4   SSSSGSEDDDEGIDSYRKGGYHAVRVGDLFN-GGRYIAQRKLGWGQFSIVWLAYDTRTSS 62
            S S  E          K      R    +    RY  +  +G G +  V  AYD     
Sbjct: 20  VSGSQQEGQQRKQHHSSKPTASMPRPHSDWQIPDRYEIRHLIGTGSYGHVCEAYDKLEKR 79

Query: 63  YVALK-IQK--SAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG-QHLC 118
            VA+K I +        +  L EI +L+ +      N   V++++D            L 
Sbjct: 80  VVAIKKILRVFEDLIDCKRILREIAILNRL------NHDHVVKVLDIVIPKDVEKFDELY 133

Query: 119 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKY----ILTGLDYLHRELGIIHTDLKPEN 174
           +VLE       +L +      + L +     K     +L G+ Y+H   GI+H DLKP N
Sbjct: 134 VVLEIADSDFKKLFR----TPVYLTE--LHIKTLLYNLLVGVKYVH-SAGILHRDLKPAN 186

Query: 175 ILL 177
            L+
Sbjct: 187 CLV 189

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 75.7 bits (187), Expect = 1e-15
 Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 25/151 (16%)

Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI--------QKSAAQFAQAALHEIEVLS 87
             +     LG G F+ V+ A    T   VA+K+             +       E+++  
Sbjct: 11  EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQN----EVKIHC 66

Query: 88  AVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVR 146
            +          ++ L ++F+    +  ++ +VLE      + R +K +R K    N+ R
Sbjct: 67  QL------KHPSILELYNYFE----DSNYVYLVLEMCHNGEMNRYLK-NRVKPFSENEAR 115

Query: 147 EICKYILTGLDYLHRELGIIHTDLKPENILL 177
                I+TG+ YLH   GI+H DL   N+LL
Sbjct: 116 HFMHQIITGMLYLHS-HGILHRDLTLSNLLL 145

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 60.2 bits (147), Expect = 2e-10
 Identities = 30/176 (17%), Positives = 49/176 (27%), Gaps = 53/176 (30%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR----QYRAPEVILRAGYSFSVDMWS 298
                L   +M  K+ DFG A +      E+  T      Y +PE+  R+ +    D+WS
Sbjct: 139 TLSNLLLTRNMNIKIADFGLATQLKMP-HEKHYTLCGTPNYISPEIATRSAHGLESDVWS 197

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
             C  + L  G   F         + +                                 
Sbjct: 198 LGCMFYTLLIGRPPF---------DTDTVKNT---------------------------- 220

Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
           L ++               Y      + E  + +  LL   P  R +    L HP+
Sbjct: 221 LNKVVLA-----------DYEMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLDHPF 265

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 76.1 bits (188), Expect = 2e-15
 Identities = 44/175 (25%), Positives = 63/175 (36%), Gaps = 47/175 (26%)

Query: 256 KVVDFGNACRA---NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDML 312
           K+ DFG A R           + T  YRAPEV+L++ Y+  VD+WS  C   E+     L
Sbjct: 160 KLADFGLA-RIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPL 218

Query: 313 FAPKSGQGFCEDEDHLALMMELIG-----------KMPRKIAIGGAQSKDYFDRHGDLKR 361
           F   S      D D L  ++++IG            +P          +  F       +
Sbjct: 219 FRGSS------DVDQLGKILDVIGLPGEEDWPRDVALP----------RQAFHSKS--AQ 260

Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
                   +D L  D               L+  L F P KR +A   L HP+  
Sbjct: 261 PIEKFVTDIDELGKD--------------LLLKCLTFNPAKRISAYSALSHPYFQ 301

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 71.1 bits (175), Expect = 9e-14
 Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 11/147 (7%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTR-TSSYVALK---IQKSAAQFAQAALHEIEVLSAVADG 92
           +Y    ++G G +  V+ A D +    +VALK   +Q        + + E+ VL  +   
Sbjct: 12  QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETF 71

Query: 93  DPSNEKCVIRLID--HFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICK 150
           +  N   V+RL D           + L +V E +   L   +      G+    ++++  
Sbjct: 72  EHPN---VVRLFDVCTVSRTDRETK-LTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMF 127

Query: 151 YILTGLDYLHRELGIIHTDLKPENILL 177
            +L GLD+LH    ++H DLKP+NIL+
Sbjct: 128 QLLRGLDFLHSH-RVVHRDLKPQNILV 153

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 76.7 bits (189), Expect = 2e-15
 Identities = 40/170 (23%), Positives = 57/170 (33%), Gaps = 38/170 (22%)

Query: 272 EEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDM-----------LF------ 313
             + TR YRAPE+IL    Y+ S+D+WS  C   EL                LF      
Sbjct: 210 SHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHINDPTNRFPLFPGSSCF 269

Query: 314 --APKSGQGFCEDEDH---LALMMELIGKMPRK--IAIGGAQSKDYFDRHGDLKRIRRLK 366
             +P        ++ +   L ++  +IG         I   +   Y          + + 
Sbjct: 270 PLSPDRNSKKVHEKSNRDQLNIIFNIIGTPTEDDLKNINKPEVIKYIKL---FPHRKPIN 326

Query: 367 FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
                     KY     D       L  +L F P KR T  Q L HP+L 
Sbjct: 327 L-------KQKYPSISDDGINL---LESMLKFNPNKRITIDQALDHPYLK 366

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 75.9 bits (187), Expect = 4e-15
 Identities = 45/149 (30%), Positives = 65/149 (43%), Gaps = 21/149 (14%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQK--SAAQFAQAALHEIEVLSAVADGD 93
            YI +  +G G +  V+LAYD  T   VA+K + +        +  L EI +L+ +    
Sbjct: 27  NYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRL---- 82

Query: 94  PSNEKCVIRLIDHFKHAGPNG-QHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKY- 151
                 +IRL D            L +VLE     L +L K      + L +     K  
Sbjct: 83  --KSDYIIRLYDLIIPDDLLKFDELYIVLEIADSDLKKLFK----TPIFLTEEH--IKTI 134

Query: 152 ---ILTGLDYLHRELGIIHTDLKPENILL 177
              +L G +++H E GIIH DLKP N LL
Sbjct: 135 LYNLLLGENFIH-ESGIIHRDLKPANCLL 162

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 14/141 (9%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN 96
            Y   RKLG G++S V+ A +   +  V +KI K      +    EI++L  +  G    
Sbjct: 37  DYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV--KKKKIKREIKILENLRGG---- 90

Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGL 156
              +I L D  K   P  +   +V E + ++  + +    Y+ L    +R     IL  L
Sbjct: 91  -PNIITLADIVKD--PVSRTPALVFEHVNNTDFKQL----YQTLTDYDIRFYMYEILKAL 143

Query: 157 DYLHRELGIIHTDLKPENILL 177
           DY H   GI+H D+KP N+++
Sbjct: 144 DYCHSM-GIMHRDVKPHNVMI 163

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 75.4 bits (186), Expect = 4e-15
 Identities = 36/188 (19%), Positives = 74/188 (39%), Gaps = 36/188 (19%)

Query: 248 LDGIDMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAF 304
           +D    + +++D+G A      +++   + +R ++ PE+++    Y +S+DMWS  C   
Sbjct: 163 IDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLA 222

Query: 305 ELATG-DMLFAPKSGQGFCEDEDHLALMMELIG-----KMPRKIAIGGAQSKDYFDRHGD 358
            +    +  F          + D L  + +++G         K  I       + D  G 
Sbjct: 223 SMIFRKEPFFHGHD------NYDQLVRIAKVLGTEDLYDYIDKYNI--ELDPRFNDILGR 274

Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAE-----FLVPLLDFTPEKRPTAQQCLQHP 413
             R R    W          RF  ++ +         FL  LL +  + R TA++ ++HP
Sbjct: 275 HSRKR----WE---------RFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHP 321

Query: 414 WL-SLRNS 420
           +  ++   
Sbjct: 322 YFYTVVKD 329

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 75.3 bits (186), Expect = 3e-15
 Identities = 46/190 (24%), Positives = 74/190 (38%), Gaps = 46/190 (24%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMW 297
           KP+  L   D   K+ DFG A RA     + +  E+ T  YRAP+V++ +  YS SVD+W
Sbjct: 146 KPQNLLINSDGALKLADFGLA-RAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIW 204

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIG-----------KMPRKIAIGG 346
           S  C   E+ TG  LF   +      D+D L  +  ++G           ++P       
Sbjct: 205 SIGCIFAEMITGKPLFPGVT------DDDQLPKIFSILGTPNPREWPQVQELP------- 251

Query: 347 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA 406
                +        + R  + +                     + L  +L F P KR +A
Sbjct: 252 ----LW--------KQRTFQVFEKKPW---SSIIPGFCQEGI-DLLSNMLCFDPNKRISA 295

Query: 407 QQCLQHPWLS 416
           +  + HP+  
Sbjct: 296 RDAMNHPYFK 305

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 66.4 bits (163), Expect = 2e-12
 Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 16/144 (11%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADGD 93
           +Y    K+G G + +V+ A D      VALK   +          A+ EI +L  +    
Sbjct: 22  KYQKLEKVGEGTYGVVYKAKD-SQGRIVALKRIRLDAEDEGIPSTAIREISLLKEL---- 76

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYIL 153
             +   ++ LID       + + L +V EF+   L +++      GL+ ++++     +L
Sbjct: 77  --HHPNIVSLIDVI----HSERCLTLVFEFMEKDLKKVLD-ENKTGLQDSQIKIYLYQLL 129

Query: 154 TGLDYLHRELGIIHTDLKPENILL 177
            G+ + H+   I+H DLKP+N+L+
Sbjct: 130 RGVAHCHQH-RILHRDLKPQNLLI 152

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 76.2 bits (187), Expect = 3e-15
 Identities = 26/172 (15%), Positives = 47/172 (27%), Gaps = 30/172 (17%)

Query: 35  GGRY---IAQRKLGWGQFSIVWLAYDTRTSSYVALKI--------QKSAAQFAQAALHEI 83
           G R    +    LG         A D  T     + +          +  Q  +  L   
Sbjct: 74  GERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLR 133

Query: 84  EVLSAVADGDPSNEKCVIRLIDHFKHAG-------------PNGQHLCMVLEFLGDSLLR 130
            +               I   D  K                        +   +  +L  
Sbjct: 134 LLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQT 193

Query: 131 LIKY-----SRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
             +      S +K L  +   ++   ++  L  LH   G++HT L+P +I+L
Sbjct: 194 FGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH-YGLVHTYLRPVDIVL 244

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 17/182 (9%), Positives = 35/182 (19%), Gaps = 61/182 (33%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEE----IQTRQYRAPEVILRAG-----YSFS 293
           +P   +        +  F +  R                +  A  ++          +F+
Sbjct: 238 RPVDIVLDQRGGVFLTGFEHLVRDGASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFA 297

Query: 294 VDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF 353
            D W+     + +   D+             +D      E I                  
Sbjct: 298 FDTWTLGLAIYWIWCADLPN----------TDDAALGGSEWI------------------ 329

Query: 354 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP 413
                                       +         L   L +  E R    Q ++ P
Sbjct: 330 --------------------FRSCKNIPQ----PVRALLEGFLRYPKEDRLLPLQAMETP 365

Query: 414 WL 415
             
Sbjct: 366 EY 367

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 74.5 bits (184), Expect = 4e-15
 Identities = 46/190 (24%), Positives = 74/190 (38%), Gaps = 47/190 (24%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMW 297
           KP+  L   +   K+ DFG A RA     +++  EI T  YRAP+V++ +  YS ++D+W
Sbjct: 127 KPQNLLINREGELKIADFGLA-RAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIW 185

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIG-----------KMPRKIAIGG 346
           S  C   E+  G  LF   S      + D L  +  ++G           ++P       
Sbjct: 186 SVGCIFAEMVNGTPLFPGVS------EADQLMRIFRILGTPNSKNWPNVTELP------- 232

Query: 347 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA 406
            +    F  +             LD   +D               L  +L   P +R TA
Sbjct: 233 -KYDPNFTVY--EPLPWESFLKGLDESGID--------------LLSKMLKLDPNQRITA 275

Query: 407 QQCLQHPWLS 416
           +Q L+H +  
Sbjct: 276 KQALEHAYFK 285

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 67.2 bits (165), Expect = 1e-12
 Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 16/144 (11%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADGD 93
           +Y    K+G G + +V+ A +       ALK   ++K         + EI +L  +    
Sbjct: 3   KYHGLEKIGEGTYGVVYKAQN-NYGETFALKKIRLEKEDEGIPSTTIREISILKEL---- 57

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYIL 153
                 +++L D         + L +V E L   L +L+      GLE    +     +L
Sbjct: 58  --KHSNIVKLYDVI----HTKKRLVLVFEHLDQDLKKLLD-VCEGGLESVTAKSFLLQLL 110

Query: 154 TGLDYLHRELGIIHTDLKPENILL 177
            G+ Y H    ++H DLKP+N+L+
Sbjct: 111 NGIAYCHDR-RVLHRDLKPQNLLI 133

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 74.1 bits (183), Expect = 6e-15
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 14/144 (9%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQ--FAQAALHEIEVLSAVADGD 93
            +    K+G G + +V+ A +  T   VALK I+           A+ EI +L  +    
Sbjct: 4   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKEL---- 59

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYIL 153
             N   +++L+D           L +V EFL   L + +  S   G+ L  ++     +L
Sbjct: 60  --NHPNIVKLLDVI----HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLL 113

Query: 154 TGLDYLHRELGIIHTDLKPENILL 177
            GL + H    ++H DLKP+N+L+
Sbjct: 114 QGLAFCHSH-RVLHRDLKPQNLLI 136

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 73.8 bits (182), Expect = 8e-15
 Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 42/177 (23%)

Query: 256 KVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGD 310
           K+ DFG A RA       F+ E+ T  YRAP+V++ +  YS S+D+WS  C   E+ TG 
Sbjct: 148 KLGDFGLA-RAFGIPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGK 206

Query: 311 MLFAPKSGQGFCEDEDHLALMMELIG-----------KMPRKIAIGGAQSKDYFDRHGDL 359
            LF   +      DE+ L L+ +++G           K+P+       +           
Sbjct: 207 PLFPGTN------DEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQRPPRDLR----- 255

Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
           + ++      LD  L+D              FL  LL   P+ R +A+Q L HPW +
Sbjct: 256 QVLQPHTKEPLDGNLMD--------------FLHGLLQLNPDMRLSAKQALHHPWFA 298

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 67.6 bits (166), Expect = 1e-12
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 17/147 (11%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ--FAQAALHEIEVLSAVADGDP 94
           ++    KLG G ++ V+   +  T  YVALK  K  ++      A+ EI ++  +     
Sbjct: 6   QFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKEL----- 60

Query: 95  SNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIK----YSRYKGLELNKVREICK 150
              + ++RL D           L +V EF+ + L + +      +  +GLELN V+    
Sbjct: 61  -KHENIVRLYDVIHT----ENKLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQW 115

Query: 151 YILTGLDYLHRELGIIHTDLKPENILL 177
            +L GL + H    I+H DLKP+N+L+
Sbjct: 116 QLLQGLAFCHEN-KILHRDLKPQNLLI 141

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 73.9 bits (182), Expect = 9e-15
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 14/142 (9%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN 96
            +    KLG G +  V+ A    T   VA+K     +   Q  + EI ++         +
Sbjct: 30  VFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDL-QEIIKEISIMQQ------CD 82

Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTG 155
              V++    +         L +V+E+    S+  +I+  R K L  +++  I +  L G
Sbjct: 83  SPHVVKYYGSYFK----NTDLWIVMEYCGAGSVSDIIR-LRNKTLTEDEIATILQSTLKG 137

Query: 156 LDYLHRELGIIHTDLKPENILL 177
           L+YLH     IH D+K  NILL
Sbjct: 138 LEYLHFM-RKIHRDIKAGNILL 158

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 40/169 (23%), Positives = 60/169 (35%), Gaps = 56/169 (33%)

Query: 254 RCKVVDFGNACRANKQFAEEIQTRQ-------YRAPEVILRAGYSFSVDMWSFACTAFEL 306
             K+ DFG A     Q  + +  R        + APEVI   GY+   D+WS   TA E+
Sbjct: 163 HAKLADFGVA----GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEM 218

Query: 307 ATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLK 366
           A G     P +       + H    + +I   P                          +
Sbjct: 219 AEGK---PPYA-------DIHPMRAIFMIPTNPPP----------------------TFR 246

Query: 367 FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
                        +S+     F +F+   L  +PE+R TA Q LQHP++
Sbjct: 247 ---------KPELWSD----NFTDFVKQCLVKSPEQRATATQLLQHPFV 282

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 73.7 bits (182), Expect = 9e-15
 Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 26/167 (15%)

Query: 256 KVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELAT-G 309
           K+ +FG A RA     + ++ E+ T  YR P+V+  A  YS S+DMWS  C   ELA  G
Sbjct: 141 KLANFGLA-RAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAG 199

Query: 310 DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWS 369
             LF           +D L  +  L+G    +      +  DY          +    + 
Sbjct: 200 RPLFPGND------VDDQLKRIFRLLGTPTEEQWPSMTKLPDY----------KPYPMYP 243

Query: 370 LDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
               LV+         R+  + L   L   P +R +A++ LQHP+ S
Sbjct: 244 ATTSLVNVVPKLNATGRDLLQNL---LKCNPVQRISAEEALQHPYFS 287

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 70.2 bits (173), Expect = 1e-13
 Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 15/144 (10%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADGD 93
           +Y    K+G G +  V+ A +  T   VALK   +         +AL EI +L  +    
Sbjct: 3   KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKEL---- 58

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYIL 153
               K ++RL D       + + L +V EF    L +    S    L+   V+     +L
Sbjct: 59  --KHKNIVRLHDVL----HSDKKLTLVFEFCDQDLKKYFD-SCNGDLDPEIVKSFLFQLL 111

Query: 154 TGLDYLHRELGIIHTDLKPENILL 177
            GL + H    ++H DLKP+N+L+
Sbjct: 112 KGLGFCHSR-NVLHRDLKPQNLLI 134

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 73.4 bits (181), Expect = 1e-14
 Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 18/147 (12%)

Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALH---EIEVLSAVAD 91
             +   R LG G+F  V+LA + ++   +ALK + K+  + A        E+E+ S +  
Sbjct: 9   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL-- 66

Query: 92  GDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICK 150
                   ++RL  +F     +   + ++LE+    ++ R ++  +    +  +      
Sbjct: 67  ----RHPNILRLYGYFH----DATRVYLILEYAPLGTVYRELQ--KLSKFDEQRTATYIT 116

Query: 151 YILTGLDYLHRELGIIHTDLKPENILL 177
            +   L Y H    +IH D+KPEN+LL
Sbjct: 117 ELANALSYCHS-KRVIHRDIKPENLLL 142

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 68.0 bits (167), Expect = 6e-13
 Identities = 42/192 (21%), Positives = 66/192 (34%), Gaps = 49/192 (25%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEI-QTRQYRAPEVILRAGYSFSVDMWSFAC 301
           KPE  L G     K+ DFG +  A      ++  T  Y  PE+I    +   VD+WS   
Sbjct: 136 KPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 195

Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
             +E   G     P     F E   +                                KR
Sbjct: 196 LCYEFLVG---KPP-----F-EANTYQETY----------------------------KR 218

Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 421
           I R+           ++ F +       + +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 219 ISRV-----------EFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSK 267

Query: 422 RDETKNKSNVEK 433
               +NK +  K
Sbjct: 268 PSNCQNKESASK 279

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 74.3 bits (182), Expect = 1e-14
 Identities = 23/169 (13%), Positives = 52/169 (30%), Gaps = 31/169 (18%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI-----------------QKSAAQFAQAA 79
             +    LG         A D  T     + +                 +    +  +  
Sbjct: 74  TLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGI 133

Query: 80  LHEIEVLSAVADGDP------SNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIK 133
            ++ +    +    P        +K +IR+    +           +   +  +L    +
Sbjct: 134 KNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERD--MWVLSRFFLYPRMQSNLQTFGE 191

Query: 134 Y-----SRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
                 S +K L  +   ++   ++  L  LH   G++HT L+P +I+L
Sbjct: 192 VLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH-YGLVHTYLRPVDIVL 239

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 68.1 bits (166), Expect = 1e-12
 Identities = 22/184 (11%), Positives = 42/184 (22%), Gaps = 64/184 (34%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAG-----------YS 291
           +P   +        +  F +  R          +R +  PE+  R              +
Sbjct: 233 RPVDIVLDQRGGVFLTGFEHLVRDGA-RVVSSVSRGFEPPELEARRATISYHRDRRTLMT 291

Query: 292 FSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD 351
           FS D W+     + +   D+             +D      E I +  + I     +   
Sbjct: 292 FSFDAWALGLVIYWIWCADLPI----------TKDAALGGSEWIFRSCKNIP-QPVR--- 337

Query: 352 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ 411
                  L  +                                 L +  E R    Q ++
Sbjct: 338 ------AL--LEG------------------------------FLRYPKEDRLLPLQAME 359

Query: 412 HPWL 415
            P  
Sbjct: 360 TPEY 363

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 73.4 bits (181), Expect = 1e-14
 Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 34/171 (19%)

Query: 256 KVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGD 310
           K+ DFG A RA     K +  E+ T  YR P+++L +  YS  +DMW   C  +E+ATG 
Sbjct: 140 KLADFGLA-RAKSIPTKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGR 198

Query: 311 MLFAPKSGQGFCEDEDHLALMMELIG-----KMPRKIAIGGAQSKDYFDRHGDLKRIRRL 365
            LF   +       E+ L  +  ++G       P     G   ++++        +    
Sbjct: 199 PLFPGST------VEEQLHFIFRILGTPTEETWP-----GILSNEEF--------KTYNY 239

Query: 366 KFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
             +  + LL       ++D  +       LL F    R +A+  ++HP+  
Sbjct: 240 PKYRAEALL-SHAPRLDSDGADLLTK---LLQFEGRNRISAEDAMKHPFFL 286

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 14/143 (9%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ--FAQAALHEIEVLSAVADGDP 94
            YI   KLG G ++ V+      T + VALK  +   +      A+ E+ +L  +     
Sbjct: 3   TYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDL----- 57

Query: 95  SNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILT 154
                ++ L D         + L +V E+L   L + +       + ++ V+     +L 
Sbjct: 58  -KHANIVTLHDII----HTEKSLTLVFEYLDKDLKQYLD-DCGNIINMHNVKLFLFQLLR 111

Query: 155 GLDYLHRELGIIHTDLKPENILL 177
           GL Y HR+  ++H DLKP+N+L+
Sbjct: 112 GLAYCHRQ-KVLHRDLKPQNLLI 133

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 16/143 (11%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGDPS 95
              +  K+G G   IV LA +  +   VA+K +     Q  +   +E+ ++         
Sbjct: 46  LLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRD------Y 99

Query: 96  NEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILT 154
               V+ +   +      G+ L +++EFL G +L  ++   R   L   ++  +C+ +L 
Sbjct: 100 QHFNVVEMYKSYLV----GEELWVLMEFLQGGALTDIVSQVR---LNEEQIATVCEAVLQ 152

Query: 155 GLDYLHRELGIIHTDLKPENILL 177
            L YLH + G+IH D+K ++ILL
Sbjct: 153 ALAYLHAQ-GVIHRDIKSDSILL 174

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 40/181 (22%), Positives = 65/181 (35%), Gaps = 56/181 (30%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ-------YRAPEVILRAGYSFSVD 295
           K +  L  +D R K+ DFG       Q ++++  R+       + APEVI R+ Y+  VD
Sbjct: 168 KSDSILLTLDGRVKLSDFGFC----AQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVD 223

Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WS      E+  G+    P          D     M+ +   P                
Sbjct: 224 IWSLGIMVIEMVDGE---PPYF-------SDSPVQAMKRLRDSPP--------------- 258

Query: 356 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
                +++     S                    +FL  +L   P++R TAQ+ L HP+L
Sbjct: 259 ----PKLKNSHKVS----------------PVLRDFLERMLVRDPQERATAQELLDHPFL 298

Query: 416 S 416
            
Sbjct: 299 L 299

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 73.3 bits (180), Expect = 2e-14
 Identities = 41/182 (22%), Positives = 71/182 (39%), Gaps = 36/182 (19%)

Query: 256 KVVDFGNA------CRANKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWSFACTAFELAT 308
           K+ D G A       +        + T  YRAPE++L A  Y+ ++D+W+  C   EL T
Sbjct: 172 KIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLT 231

Query: 309 GDMLFAPKS---GQGFCEDEDHLALMMELIG-----------KMPRKIAIGGAQSKDYFD 354
            + +F  +            D L  +  ++G           KMP           ++  
Sbjct: 232 SEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMP-----------EH-- 278

Query: 355 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
               +K  RR  + +   +   +    + D++ F   L  LL   P KR T++Q +Q P+
Sbjct: 279 -STLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAF-HLLQKLLTMDPIKRITSEQAMQDPY 336

Query: 415 LS 416
             
Sbjct: 337 FL 338

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 66.0 bits (161), Expect = 5e-12
 Identities = 42/165 (25%), Positives = 66/165 (40%), Gaps = 23/165 (13%)

Query: 27  VRVGDLFNGGRYIAQRKLGWGQFSIVWLAY--DTRTSSYVALKIQKSAAQFAQAALHEIE 84
            RV DLF         K+G G +  V+ A   D +     ALK  +     + +A  EI 
Sbjct: 16  ERVEDLFE----YEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG-ISMSACREIA 70

Query: 85  VLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKG----- 139
           +L  +          VI L   F       + + ++ ++    L  +IK+ R        
Sbjct: 71  LLREL------KHPNVISLQKVF--LSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKP 122

Query: 140 --LELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTID 182
             L    V+ +   IL G+ YLH    ++H DLKP NIL++    
Sbjct: 123 VQLPRGMVKSLLYQILDGIHYLHAN-WVLHRDLKPANILVMGEGP 166

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 72.3 bits (178), Expect = 3e-14
 Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 16/143 (11%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGDPS 95
           +Y    K+G G    V+ A D  T   VA++ +        +  ++EI V+        +
Sbjct: 21  KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRE------N 74

Query: 96  NEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILT 154
               ++  +D +      G  L +V+E+L G SL  ++  +    ++  ++  +C+  L 
Sbjct: 75  KNPNIVNYLDSYLV----GDELWVVMEYLAGGSLTDVVTETC---MDEGQIAAVCRECLQ 127

Query: 155 GLDYLHRELGIIHTDLKPENILL 177
            L++LH    +IH D+K +NILL
Sbjct: 128 ALEFLHSN-QVIHRDIKSDNILL 149

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 40/181 (22%), Positives = 60/181 (33%), Gaps = 56/181 (30%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ-------YRAPEVILRAGYSFSVD 295
           K +  L G+D   K+ DFG       Q   E   R        + APEV+ R  Y   VD
Sbjct: 143 KSDNILLGMDGSVKLTDFGFC----AQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVD 198

Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WS    A E+  G+    P          ++    + LI                    
Sbjct: 199 IWSLGIMAIEMIEGE---PPYL-------NENPLRALYLIATNGT--------------- 233

Query: 356 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
                 ++  +  S                  F +FL   L+   EKR +A++ LQH +L
Sbjct: 234 ----PELQNPEKLS----------------AIFRDFLNRCLEMDVEKRGSAKELLQHQFL 273

Query: 416 S 416
            
Sbjct: 274 K 274

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 72.4 bits (178), Expect = 3e-14
 Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 17/144 (11%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI--QKSAAQFAQAALHEIEVLSAVADGDP 94
            +    K+G G F  V+   D RT   VA+KI   + A    +    EI VLS       
Sbjct: 23  LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQ------ 76

Query: 95  SNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYIL 153
            +   V +    +         L +++E+L G S L L++      L+  ++  I + IL
Sbjct: 77  CDSPYVTKYYGSYLK----DTKLWIIMEYLGGGSALDLLE---PGPLDETQIATILREIL 129

Query: 154 TGLDYLHRELGIIHTDLKPENILL 177
            GLDYLH E   IH D+K  N+LL
Sbjct: 130 KGLDYLHSE-KKIHRDIKAANVLL 152

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 17/67 (25%)

Query: 254 RCKVVDFGNACRANKQFAEEIQTRQYR----------APEVILRAGYSFSVDMWSFACTA 303
             K+ DFG A        +   T+  R          APEVI ++ Y    D+WS   TA
Sbjct: 157 EVKLADFGVA-------GQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITA 209

Query: 304 FELATGD 310
            ELA G+
Sbjct: 210 IELARGE 216

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 71.9 bits (177), Expect = 3e-14
 Identities = 34/147 (23%), Positives = 67/147 (45%), Gaps = 18/147 (12%)

Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI-QKSAAQFAQAALH---EIEVLSAVAD 91
             +   R LG G+F  V+LA + +    +ALK+  KS  +          EIE+ S +  
Sbjct: 14  DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHL-- 71

Query: 92  GDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICK 150
                   ++R+ ++F     + + + ++LEF     L + ++  ++   +  +     +
Sbjct: 72  ----RHPNILRMYNYFH----DRKRIYLMLEFAPRGELYKELQ--KHGRFDEQRSATFME 121

Query: 151 YILTGLDYLHRELGIIHTDLKPENILL 177
            +   L Y H    +IH D+KPEN+L+
Sbjct: 122 ELADALHYCHE-RKVIHRDIKPENLLM 147

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 33/173 (19%), Positives = 52/173 (30%), Gaps = 49/173 (28%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEI-QTRQYRAPEVILRAGYSFSVDMWSFAC 301
           KPE  L G     K+ DFG +  A       +  T  Y  PE+I    +   VD+W    
Sbjct: 141 KPENLLMGYKGELKIADFGWSVHAPSLRRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGV 200

Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
             +E   G     P     F +   H                                +R
Sbjct: 201 LCYEFLVG---MPP-----F-DSPSHTETH----------------------------RR 223

Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
           I  +             +F    +    + +  LL + P +R   +  ++HPW
Sbjct: 224 IVNV-----------DLKFPPFLSDGSKDLISKLLRYHPPQRLPLKGVMEHPW 265

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 71.7 bits (176), Expect = 4e-14
 Identities = 29/148 (19%), Positives = 42/148 (28%), Gaps = 20/148 (13%)

Query: 35  GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI----QKSAAQFAQAALHEIEVLSAVA 90
            GRY      G       W A DT     VAL              Q  L     LS + 
Sbjct: 30  NGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRI- 88

Query: 91  DGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREIC 149
              P     V R++D             +V E++ G SL  +                  
Sbjct: 89  -DKPG----VARVLD----VVHTRAGGLVVAEWIRGGSLQEVAD----TSPSPVGAIRAM 135

Query: 150 KYILTGLDYLHRELGIIHTDLKPENILL 177
           + +    D  HR  G+  +   P  + +
Sbjct: 136 QSLAAAADAAHRA-GVALSIDHPSRVRV 162

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 71.2 bits (175), Expect = 7e-14
 Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 24/153 (15%)

Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALH------EIEVLSA 88
            +Y     LG G F  V+       +  VA+K ++K          +      E+ +L  
Sbjct: 43  SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKK 102

Query: 89  VADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEF---LGDSLLRLIKYSRYKG-LELNK 144
           V+ G       VIRL+D F+          ++LE    + D    L  +   +G L+   
Sbjct: 103 VSSGFSG----VIRLLDWFE----RPDSFVLILERPEPVQD----LFDFITERGALQEEL 150

Query: 145 VREICKYILTGLDYLHRELGIIHTDLKPENILL 177
            R     +L  + + H   G++H D+K ENIL+
Sbjct: 151 ARSFFWQVLEAVRHCHN-CGVLHRDIKDENILI 182

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 37/176 (21%), Positives = 59/176 (33%), Gaps = 57/176 (32%)

Query: 243 KPERCL-DGIDMRCKVVDFG-NACRANKQFAEEIQTRQYRAPEVILRAGYS-FSVDMWSF 299
           K E  L D      K++DFG  A   +  + +   TR Y  PE I    Y   S  +WS 
Sbjct: 176 KDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSL 235

Query: 300 ACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDL 359
                    G +L+                 M  + G +P             F+     
Sbjct: 236 ---------GILLYD----------------M--VCGDIP-------------FE---HD 252

Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
           + I R + +        + R S ++ +     +   L   P  RPT ++   HPW+
Sbjct: 253 EEIIRGQVFF-------RQRVS-SECQ---HLIRWCLALRPSDRPTFEEIQNHPWM 297

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} Length = 352

 Score = 71.7 bits (176), Expect = 7e-14
 Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 19/157 (12%)

Query: 35  GGRYIAQRKLGWGQFSIVWLAYDTRTSS--------YVALKIQKSAAQFAQAALHEIEVL 86
           G ++  +         I++ A  T T +          +LK+     +      +E    
Sbjct: 41  GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKDGRL----FNEQNFF 96

Query: 87  SAVADGDPSNEKCVIRLIDH-----FKHAGPN-GQHLCMVLEFLGDSLLRLIKYSRYKGL 140
              A     N+   +              G +  ++  +VL  LG SL   +  S    L
Sbjct: 97  QRAAKPLQVNKWKKLYSTPLLAIPTCMGFGVHQDKYRFLVLPSLGRSLQSALDVSPKHVL 156

Query: 141 ELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
               V ++   +L  L++LH E   +H ++  ENI +
Sbjct: 157 SERSVLQVACRLLDALEFLH-ENEYVHGNVTAENIFV 192

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 71.5 bits (176), Expect = 7e-14
 Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 18/147 (12%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK------IQKSAAQFAQAALHEIEVLSAVA 90
           RY     LG GQF+ V+ A D  T+  VA+K        ++     + AL EI++L  + 
Sbjct: 11  RYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQEL- 69

Query: 91  DGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICK 150
                +   +I L+D F     +  ++ +V +F+   L  +IK      L  + ++    
Sbjct: 70  -----SHPNIIGLLDAF----GHKSNISLVFDFMETDLEVIIK-DNSLVLTPSHIKAYML 119

Query: 151 YILTGLDYLHRELGIIHTDLKPENILL 177
             L GL+YLH+   I+H DLKP N+LL
Sbjct: 120 MTLQGLEYLHQH-WILHRDLKPNNLLL 145

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 71.5 bits (176), Expect = 8e-14
 Identities = 43/169 (25%), Positives = 62/169 (36%), Gaps = 36/169 (21%)

Query: 256 KVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGD 310
           K+ DFG A ++    N+ +  ++ TR YRAPE++  A  Y   VDMW+  C   EL    
Sbjct: 152 KLADFGLA-KSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRV 210

Query: 311 MLFAPKSGQGFCEDEDHLALMMELIG-----KMPRKIAIGGAQSKDYFDRHGDLKRIRRL 365
                 S      D D L  + E +G     + P           DY             
Sbjct: 211 PFLPGDS------DLDQLTRIFETLGTPTEEQWP-----DMCSLPDY----------VTF 249

Query: 366 KFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
           K +    L    + FS        + +  L  F P  R TA Q L+  +
Sbjct: 250 KSFPGIPL---HHIFSAAGDDLL-DLIQGLFLFNPCARITATQALKMKY 294

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 39/157 (24%)

Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI-QKSAAQFAQAALH---EIEVLSAVAD 91
           G YI +  LG G F  V LA   +T   VALK   +   + +   +    EI  L     
Sbjct: 9   GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYL----- 63

Query: 92  GDPSNEKCVIRLIDHFKHAGPN----------GQHLCMVLEFLGDSLL-RLIKYSRYKGL 140
                     +L+ H     P+             + MV+E+ G  L   +++  R   +
Sbjct: 64  ----------KLLRH-----PHIIKLYDVITTPTDIVMVIEYAGGELFDYIVEKKR---M 105

Query: 141 ELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
             ++ R   + I+  ++Y HR   I+H DLKPEN+LL
Sbjct: 106 TEDEGRRFFQQIICAIEYCHR-HKIVHRDLKPENLLL 141

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 35/177 (19%), Positives = 58/177 (32%), Gaps = 53/177 (29%)

Query: 243 KPERCLDGIDMRCKVVDFG--NACRANKQFAEEIQTRQYRAPEVILRAGYS-FSVDMWSF 299
           KPE  L   ++  K+ DFG  N             +  Y APEVI    Y+   VD+WS 
Sbjct: 135 KPENLLLDDNLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSC 194

Query: 300 ACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDL 359
               + +  G + F          D++ +  +        +K+        D+       
Sbjct: 195 GIVLYVMLVGRLPF----------DDEFIPNLF-------KKVNSCVYVMPDFLSP--GA 235

Query: 360 KR-IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
           +  IRR+       ++ D                       P +R T Q+  + PW 
Sbjct: 236 QSLIRRM-------IVAD-----------------------PMQRITIQEIRRDPWF 262

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 19/142 (13%)

Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVI 101
             +G G F +V  A     +  VA+K  +S ++  +A + E+  LS V      N   ++
Sbjct: 14  EVVGRGAFGVVCKA--KWRAKDVAIKQIESESER-KAFIVELRQLSRV------NHPNIV 64

Query: 102 RLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLI-KYSRYKGLELNKVREICKYILTGLDYL 159
           +L       G     +C+V+E+  G SL  ++                 C     G+ YL
Sbjct: 65  KLY------GACLNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYL 118

Query: 160 HRE--LGIIHTDLKPENILLVS 179
           H      +IH DLKP N+LLV+
Sbjct: 119 HSMQPKALIHRDLKPPNLLLVA 140

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 243 KPERCL-DGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFAC 301
           KP   L        K+ DFG AC           +  + APEV   + YS   D++S+  
Sbjct: 132 KPPNLLLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGI 191

Query: 302 TAFELATGDMLFA 314
             +E+ T    F 
Sbjct: 192 ILWEVITRRKPFD 204

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 39/157 (24%)

Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI---QKSAAQFAQAALHEIEVLSAVADG 92
           G Y   + +G G F+ V LA    T   VA+KI    +      Q    E+ ++      
Sbjct: 15  GNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIM------ 68

Query: 93  DPSNEKCVIRLIDHFKHAGPN----------GQHLCMVLEFL--GDSLLRLIKYSRYKGL 140
                    ++++H     PN           + L +++E+   G+    L+ + R   +
Sbjct: 69  ---------KILNH-----PNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHGR---M 111

Query: 141 ELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
           +  + R   + I++ + Y H+   I+H DLK EN+LL
Sbjct: 112 KEKEARSKFRQIVSAVQYCHQ-KRIVHRDLKAENLLL 147

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 36/176 (20%), Positives = 54/176 (30%), Gaps = 51/176 (28%)

Query: 243 KPERCLDGIDMRCKVVDFG--NACRANKQFAEEIQTRQYRAPEVILRAGYS-FSVDMWSF 299
           K E  L   DM  K+ DFG  N      +         Y APE+     Y    VD+WS 
Sbjct: 141 KAENLLLDADMNIKIADFGFSNEFTVGGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSL 200

Query: 300 ACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDL 359
               + L +G + F          D  +L        ++  ++  G              
Sbjct: 201 GVILYTLVSGSLPF----------DGQNLK-------ELRERVLRG-------------- 229

Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
                            KYR     + +    L   L   P KR T +Q ++  W+
Sbjct: 230 -----------------KYRIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMKDRWI 268

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 37/152 (24%), Positives = 59/152 (38%), Gaps = 22/152 (14%)

Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI------QKSAAQFAQAALH---EIEVL 86
            +Y     LG G F  VW A D   +  V +K        +              EI +L
Sbjct: 24  QKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAIL 83

Query: 87  SAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKG-LELNKV 145
           S V          +I+++D F+    N     +V+E  G   L L  +      L+    
Sbjct: 84  SRV------EHANIIKVLDIFE----NQGFFQLVMEKHGSG-LDLFAFIDRHPRLDEPLA 132

Query: 146 REICKYILTGLDYLHRELGIIHTDLKPENILL 177
             I + +++ + YL     IIH D+K ENI++
Sbjct: 133 SYIFRQLVSAVGYLRL-KDIIHRDIKDENIVI 163

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 34/176 (19%), Positives = 55/176 (31%), Gaps = 57/176 (32%)

Query: 243 KPERCLDGIDMRCKVVDFG--NACRANKQFAEEIQTRQYRAPEVILRAGYS-FSVDMWSF 299
           K E  +   D   K++DFG        K F     T +Y APEV++   Y    ++MWS 
Sbjct: 157 KDENIVIAEDFTIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWS- 215

Query: 300 ACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDL 359
                    G  L+              L     +  + P             F    +L
Sbjct: 216 --------LGVTLYT-------------L-----VFEENP-------------FC---EL 233

Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
           +                        ++E    +  LL   PE+R T ++ +  PW+
Sbjct: 234 EETVE-----------AAIHPPYLVSKELMSLVSGLLQPVPERRTTLEKLVTDPWV 278

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 38/157 (24%), Positives = 57/157 (36%), Gaps = 42/157 (26%)

Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPS 95
            RY   + +G G F +  L  D  T   VA+K  +  A   +    EI            
Sbjct: 20  DRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINH--------- 70

Query: 96  NEKCVIRLIDHFKHAGPN----------GQHLCMVLEFL--GDSLLRLIKYSRYKGLELN 143
                 R + H     PN            HL +++E+   G+   R+    R+      
Sbjct: 71  ------RSLRH-----PNIVRFKEVILTPTHLAIIMEYASGGELYERICNAGRF------ 113

Query: 144 KVREICKY---ILTGLDYLHRELGIIHTDLKPENILL 177
              E   +   +L+G+ Y H  + I H DLK EN LL
Sbjct: 114 SEDEARFFFQQLLSGVSYCHS-MQICHRDLKLENTLL 149

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 42/211 (19%), Positives = 66/211 (31%), Gaps = 49/211 (23%)

Query: 243 KPERCL-DG-IDMRCKVVDFG--NACRANKQFAEEIQTRQYRAPEVILRAGYS-FSVDMW 297
           K E  L DG    R K+ DFG   +   + Q    + T  Y APEV+LR  Y     D+W
Sbjct: 143 KLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVW 202

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S   T + +  G   F         ED +          K  ++I         Y     
Sbjct: 203 SCGVTLYVMLVGAYPF---------EDPE----EPRDYRKTIQRILSV-----KY----- 239

Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL-- 415
               I      S              +       +  +    P  R +  +   H W   
Sbjct: 240 ---SIPDDIRIS-------------PECC---HLISRIFVADPATRISIPEIKTHSWFLK 280

Query: 416 SLRNSTRDETKNKSNVEKVDVGMSKLEIKVG 446
           +L     +E+   S  ++ +  M  L+  + 
Sbjct: 281 NLPADLMNESNTGSQFQEPEQPMQSLDTIMQ 311

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 68.8 bits (169), Expect = 3e-13
 Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 24/149 (16%)

Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI--QKSAAQFAQAALHEIEVLSAVADGD 93
             +   + LG G +  V LA +  T   VA+KI   K A    +    EI +   +    
Sbjct: 7   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKML---- 62

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKY 151
             N + V++   H +     G    + LE+   G+   R+               +  ++
Sbjct: 63  --NHENVVKFYGHRR----EGNIQYLFLEYCSGGELFDRIEPDIGM------PEPDAQRF 110

Query: 152 ---ILTGLDYLHRELGIIHTDLKPENILL 177
              ++ G+ YLH  +GI H D+KPEN+LL
Sbjct: 111 FHQLMAGVVYLHG-IGITHRDIKPENLLL 138

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 26/179 (14%), Positives = 42/179 (23%), Gaps = 53/179 (29%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEI-QTR----QYRAPEVILRAGYS-FSVDM 296
           KPE  L       K+ DFG A        E +         Y APE++ R  +    VD+
Sbjct: 132 KPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDV 191

Query: 297 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 356
           WS       +  G++ +           +       E                  +    
Sbjct: 192 WSCGIVLTAMLAGELPW-----------DQPSDSCQEY-----SDWKEKKTYLNPWKKID 235

Query: 357 GDLKR-IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
                 + +                              +L   P  R T     +  W
Sbjct: 236 SAPLALLHK------------------------------ILVENPSARITIPDIKKDRW 264

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 68.8 bits (169), Expect = 4e-13
 Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 14/148 (9%)

Query: 35  GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFA--QAALH--EIEVLSAVA 90
             RY     LG+G  S V LA D R    VA+K+ ++    A   +       E  +A A
Sbjct: 11  SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRA--DLARDPSFYLRFRREAQNAAA 68

Query: 91  DGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREIC 149
              P+    ++ + D  +   P G    +V+E++ G +L  ++       +   +  E+ 
Sbjct: 69  LNHPA----IVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVH--TEGPMTPKRAIEVI 122

Query: 150 KYILTGLDYLHRELGIIHTDLKPENILL 177
                 L++ H+  GIIH D+KP NI++
Sbjct: 123 ADACQALNFSHQ-NGIIHRDVKPANIMI 149

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 68.1 bits (167), Expect = 6e-13
 Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 20/140 (14%)

Query: 42  RKLGWGQFSIVWLAYDTRTSSYVA---LKIQKSAAQFAQAALHEIEVLSAVADGDPSNEK 98
           +++G G F  V+     +    VA   L +     Q  QA  +E+ VL            
Sbjct: 30  QRIGSGSFGTVYKG---KWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKT------RHV 80

Query: 99  CVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLD 157
            ++  +            L +V ++  G SL   +  S  K  E+ K+ +I +    G+D
Sbjct: 81  NILLFM-----GYSTAPQLAIVTQWCEGSSLYHHLHASETK-FEMKKLIDIARQTARGMD 134

Query: 158 YLHRELGIIHTDLKPENILL 177
           YLH +  IIH DLK  NI L
Sbjct: 135 YLHAK-SIIHRDLKSNNIFL 153

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 243 KPERCLDGIDMRCKVVDFGNA-----CRANKQFAEEIQTRQYRAPEVILRAG---YSFSV 294
           K        D   K+ DFG A        + QF +   +  + APEVI       YSF  
Sbjct: 147 KSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQS 206

Query: 295 DMWSFACTAFELATGDMLFA 314
           D+++F    +EL TG + ++
Sbjct: 207 DVYAFGIVLYELMTGQLPYS 226

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 68.5 bits (168), Expect = 7e-13
 Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 30/152 (19%)

Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI--QKSAAQFAQAALHEIEVLSAVADGD 93
             +   + LG G +  V LA +  T   VA+KI   K A    +    EI +   +    
Sbjct: 7   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKML---- 62

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEF-----LGDSLLRLIKYSRYKGLELNKVREI 148
             N + V++   H +     G    + LE+     L D   R+         E     + 
Sbjct: 63  --NHENVVKFYGHRR----EGNIQYLFLEYCSGGELFD---RIEPDIGMP--E----PDA 107

Query: 149 CKY---ILTGLDYLHRELGIIHTDLKPENILL 177
            ++   ++ G+ YLH  +GI H D+KPEN+LL
Sbjct: 108 QRFFHQLMAGVVYLHG-IGITHRDIKPENLLL 138

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 41/206 (19%), Positives = 60/206 (29%), Gaps = 53/206 (25%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEI-QTR----QYRAPEVILRAGYS-FSVDM 296
           KPE  L       K+ DFG A        E +         Y APE++ R  +    VD+
Sbjct: 132 KPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDV 191

Query: 297 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 356
           WS  C       G +L A                M  L G++P             +D+ 
Sbjct: 192 WS--C-------GIVLTA----------------M--LAGELP-------------WDQP 211

Query: 357 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL- 415
            D  +            L    +   +        L  +L   P  R T     +  W  
Sbjct: 212 SDSCQEYSDWK-EKKTYLNPWKKID-SAPL---ALLHKILVENPSARITIPDIKKDRWYN 266

Query: 416 -SLRNSTRDETKNKSNVEKVDVGMSK 440
             L+   +        V +   G SK
Sbjct: 267 KPLKKGAKRPRVTSGGVSESPSGFSK 292

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 67.7 bits (166), Expect = 7e-13
 Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 23/145 (15%)

Query: 41  QRKLGWGQFSIVWLAYDTRTSSYVALKI-----QKSAAQFAQAALHEIEVLSAVADGDPS 95
           +  +G G F  V+ A        VA+K       +  +Q  +    E ++ + +      
Sbjct: 12  EEIIGIGGFGKVYRA--FWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAML------ 63

Query: 96  NEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILT 154
               +I      +       +LC+V+EF  G  L R++     K +  + +      I  
Sbjct: 64  KHPNIIA----LRGVCLKEPNLCLVMEFARGGPLNRVL---SGKRIPPDILVNWAVQIAR 116

Query: 155 GLDYLHRE--LGIIHTDLKPENILL 177
           G++YLH E  + IIH DLK  NIL+
Sbjct: 117 GMNYLHDEAIVPIIHRDLKSSNILI 141

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 243 KPERCLDGIDMRCKVVDFGNAC-RANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFAC 301
           +     D  +   K+ DFG A                + APEVI  + +S   D+WS+  
Sbjct: 143 QKVENGDLSNKILKITDFGLAREWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGV 202

Query: 302 TAFELATGDMLFA 314
             +EL TG++ F 
Sbjct: 203 LLWELLTGEVPFR 215

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 67.3 bits (165), Expect = 9e-13
 Identities = 30/150 (20%), Positives = 60/150 (40%), Gaps = 23/150 (15%)

Query: 41  QRKLGWGQFSIVWLAYDTRTSSYVALKI--------QKSAAQFAQAALHEIEVLSAVADG 92
           ++++G G F +V      +  S VA+K         +    +  Q    E+ ++S +   
Sbjct: 24  EKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNL--- 80

Query: 93  DPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKY 151
              N   +++L       G       MV+EF+    L   +   +   ++ +    +   
Sbjct: 81  ---NHPNIVKLY------GLMHNPPRMVMEFVPCGDLYHRLL-DKAHPIKWSVKLRLMLD 130

Query: 152 ILTGLDYLH-RELGIIHTDLKPENILLVST 180
           I  G++Y+  +   I+H DL+  NI L S 
Sbjct: 131 IALGIEYMQNQNPPIVHRDLRSPNIFLQSL 160

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 252 DMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAG--YSFSVDMWSFACTAFELATG 309
            +  KV DFG + ++    +  +   Q+ APE I      Y+   D +SFA   + + TG
Sbjct: 165 PVCAKVADFGLSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTG 224

Query: 310 DMLFA 314
           +  F 
Sbjct: 225 EGPFD 229

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 14/146 (9%)

Query: 35  GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALH--EIEVLSAVADG 92
             RY    KLG G  S V+LA DT  +  VA+K      +  +  L   E EV ++    
Sbjct: 10  NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLS 69

Query: 93  DPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKY 151
             +    ++ +ID             +V+E++ G +L   I+   +  L ++        
Sbjct: 70  HQN----IVSMID----VDEEDDCYYLVMEYIEGPTLSEYIE--SHGPLSVDTAINFTNQ 119

Query: 152 ILTGLDYLHRELGIIHTDLKPENILL 177
           IL G+ + H    I+H D+KP+NIL+
Sbjct: 120 ILDGIKHAHDM-RIVHRDIKPQNILI 144

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 67.4 bits (165), Expect = 1e-12
 Identities = 32/143 (22%), Positives = 64/143 (44%), Gaps = 25/143 (17%)

Query: 42  RKLGWGQFSIVWLAYDTRTSSY---VALKI---QKSAAQFAQAALHEIEVLSAVADGDPS 95
             +G G+F  V+         +   VA+++   ++      +A   E+            
Sbjct: 39  ELIGKGRFGQVYHGR------WHGEVAIRLIDIERDNEDQLKAFKREVMAYRQT------ 86

Query: 96  NEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILT 154
             + V+     F  A  +  HL ++     G +L  +++ ++   L++NK R+I + I+ 
Sbjct: 87  RHENVVL----FMGACMSPPHLAIITSLCKGRTLYSVVRDAKIV-LDVNKTRQIAQEIVK 141

Query: 155 GLDYLHRELGIIHTDLKPENILL 177
           G+ YLH + GI+H DLK +N+  
Sbjct: 142 GMGYLHAK-GILHKDLKSKNVFY 163

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 17/80 (21%)

Query: 252 DMRCKVVDFGNAC--------RANKQFAEEIQTRQYRAPEVI---------LRAGYSFSV 294
           + +  + DFG           R   +   +     + APE+I          +  +S   
Sbjct: 165 NGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHS 224

Query: 295 DMWSFACTAFELATGDMLFA 314
           D+++     +EL   +  F 
Sbjct: 225 DVFALGTIWYELHAREWPFK 244

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 44/164 (26%), Positives = 62/164 (37%), Gaps = 38/164 (23%)

Query: 28  RVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA----AQF-------A 76
           R G  F  G Y  +R +G G    V+ A DT     VALK+          F       A
Sbjct: 28  REGTQF--GPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREA 85

Query: 77  QAA--LHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIK 133
           + A  L E           P     V+ + D     G     L + +  + G  L  +++
Sbjct: 86  RTAGRLQE-----------PH----VVPIHD----FGEIDGQLYVDMRLINGVDLAAMLR 126

Query: 134 YSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
             R   L   +   I + I + LD  H   G  H D+KPENIL+
Sbjct: 127 --RQGPLAPPRAVAIVRQIGSALDAAHAA-GATHRDVKPENILV 167

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 67.9 bits (166), Expect = 2e-12
 Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 40/158 (25%)

Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI-QKSAAQFAQAALH---EIEVLSAVAD 91
           G YI    LG G F  V +     T   VA+KI  +   +          EI+ L     
Sbjct: 16  GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNL----- 70

Query: 92  GDPSNEKCVIRLIDHFKHAGPN----------GQHLCMVLEFL--GDSLLRLIKYSRYKG 139
                     +L  H     P+             + MV+E++  G+    + K  R   
Sbjct: 71  ----------KLFRH-----PHIIKLYQVISTPSDIFMVMEYVSGGELFDYICKNGR--- 112

Query: 140 LELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
           L+  + R + + IL+G+DY HR   ++H DLKPEN+LL
Sbjct: 113 LDEKESRRLFQQILSGVDYCHR-HMVVHRDLKPENVLL 149

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 39/178 (21%), Positives = 56/178 (31%), Gaps = 55/178 (30%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR----QYRAPEVILRAGYS-FSVDMW 297
           KPE  L    M  K+ DFG +        E ++T      Y APEVI    Y+   VD+W
Sbjct: 143 KPENVLLDAHMNAKIADFGLS--NMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIW 200

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S     + L  G + F          D+DH+  +        +KI  G            
Sbjct: 201 SSGVILYALLCGTLPF----------DDDHVPTLF-------KKICDG------------ 231

Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
                               +   +         L  +L   P KR T +   +H W 
Sbjct: 232 -------------------IFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIREHEWF 270

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 18/147 (12%), Positives = 51/147 (34%), Gaps = 25/147 (17%)

Query: 41  QRKLGWGQFSIVWLA-YDTRTSSYVALKI---QKSAAQFAQAALHEIEVLSAVADGDPSN 96
             KL       +W   +     + + +K+   +  + + ++    E   L         +
Sbjct: 15  LTKLNENHSGELWKGRWQ---GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIF------S 65

Query: 97  EKCVIRLIDHFKHAG----PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKY 151
              V+ ++      G    P   H  ++  ++   SL  ++       ++ ++  +    
Sbjct: 66  HPNVLPVL------GACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALD 119

Query: 152 ILTGLDYLH-RELGIIHTDLKPENILL 177
           +  G+ +LH  E  I    L   ++++
Sbjct: 120 MARGMAFLHTLEPLIPRHALNSRSVMI 146

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 49.5 bits (119), Expect = 7e-07
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGY---SFSVDMWSF 299
                +   DM  ++         + Q    +    + APE + +        S DMWSF
Sbjct: 140 NSRSVMIDEDMTARISMADVKF--SFQSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSF 197

Query: 300 ACTAFELATGDMLFA 314
           A   +EL T ++ FA
Sbjct: 198 AVLLWELVTREVPFA 212

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 20/144 (13%)

Query: 41  QRKLGWGQFSIVWLA-YDTRTSSYVALKI---QKSAAQFAQAALHEIEVLSAVADGDPSN 96
           + K+G G F  V  A +     S VA+KI   Q   A+     L E+ ++  +       
Sbjct: 42  KEKIGAGSFGTVHRAEWH---GSDVAVKILMEQDFHAERVNEFLREVAIMKRL------R 92

Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLR-LIKYSRYKGLELNKVREICKYILT 154
              ++     F  A     +L +V E+L   SL R L K    + L+  +   +   +  
Sbjct: 93  HPNIVL----FMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAK 148

Query: 155 GLDYLH-RELGIIHTDLKPENILL 177
           G++YLH R   I+H +LK  N+L+
Sbjct: 149 GMNYLHNRNPPIVHRNLKSPNLLV 172

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 3/75 (4%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAE---EIQTRQYRAPEVILRAGYSFSVDMWSF 299
           K    L       KV DFG +      F        T ++ APEV+     +   D++SF
Sbjct: 166 KSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSF 225

Query: 300 ACTAFELATGDMLFA 314
               +ELAT    + 
Sbjct: 226 GVILWELATLQQPWG 240

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 65.7 bits (161), Expect = 4e-12
 Identities = 41/158 (25%), Positives = 64/158 (40%), Gaps = 40/158 (25%)

Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI-QKSAAQFAQAALH---EIEVLSAVAD 91
           G Y+    LG G F  V +     T   VA+KI  +   +          EI+ L     
Sbjct: 11  GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNL----- 65

Query: 92  GDPSNEKCVIRLIDHFKHAGPN----------GQHLCMVLEFL--GDSLLRLIKYSRYKG 139
                     +L  H     P+               MV+E++  G+    + K+ R   
Sbjct: 66  ----------KLFRH-----PHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKHGR--- 107

Query: 140 LELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
           +E  + R + + IL+ +DY HR   ++H DLKPEN+LL
Sbjct: 108 VEEMEARRLFQQILSAVDYCHR-HMVVHRDLKPENVLL 144

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 38/178 (21%), Positives = 59/178 (33%), Gaps = 55/178 (30%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR----QYRAPEVILRAGYS-FSVDMW 297
           KPE  L    M  K+ DFG +        E ++T      Y APEVI    Y+   VD+W
Sbjct: 138 KPENVLLDAHMNAKIADFGLS--NMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIW 195

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S     + L  G + F          D++H+  +        +KI  G      +     
Sbjct: 196 SCGVILYALLCGTLPF----------DDEHVPTLF-------KKIRGG-----VF----- 228

Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
                  +  +            +          L+ +L   P KR T +   +H W 
Sbjct: 229 ------YIPEY-----------LN-RSVA---TLLMHMLQVDPLKRATIKDIREHEWF 265

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 65.4 bits (160), Expect = 6e-12
 Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 22/142 (15%)

Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKI-----QKSAAQFAQAALHEIEVLSAVADGDPSN 96
             LG G F          T   + +K      +++   F    L E++V+  +       
Sbjct: 16  EVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTF----LKEVKVMRCL------E 65

Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTG 155
              V++ I          + L  + E++ G +L  +IK S       ++     K I +G
Sbjct: 66  HPNVLKFIG----VLYKDKRLNFITEYIKGGTLRGIIK-SMDSQYPWSQRVSFAKDIASG 120

Query: 156 LDYLHRELGIIHTDLKPENILL 177
           + YLH  + IIH DL   N L+
Sbjct: 121 MAYLHS-MNIIHRDLNSHNCLV 141

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 17/86 (19%)

Query: 243 KPERCLDGIDMRCKVVDFGNAC-----------------RANKQFAEEIQTRQYRAPEVI 285
               CL   +    V DFG A                     K+    +    + APE+I
Sbjct: 135 NSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMI 194

Query: 286 LRAGYSFSVDMWSFACTAFELATGDM 311
               Y   VD++SF     E+     
Sbjct: 195 NGRSYDEKVDVFSFGIVLCEIIGRVN 220

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 65.4 bits (160), Expect = 6e-12
 Identities = 40/155 (25%), Positives = 59/155 (38%), Gaps = 26/155 (16%)

Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI-------QKSAAQFAQAALHEIEVLSA 88
             Y     LG G F  V+  +       VA+K+         S    +     E+ +L  
Sbjct: 31  AEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWK 90

Query: 89  VADGD--PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL---GDSLLRLIKYSRYKG-LEL 142
           V  G   P     VIRL+D F+      +   +VLE      D    L  Y   KG L  
Sbjct: 91  VGAGGGHPG----VIRLLDWFE----TQEGFMLVLERPLPAQD----LFDYITEKGPLGE 138

Query: 143 NKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
              R     ++  + + H   G++H D+K ENIL+
Sbjct: 139 GPSRCFFGQVVAAIQHCHS-RGVVHRDIKDENILI 172

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 35/176 (19%), Positives = 54/176 (30%), Gaps = 57/176 (32%)

Query: 243 KPERCL-DGIDMRCKVVDFG-NACRANKQFAEEIQTRQYRAPEVILRAGYS-FSVDMWSF 299
           K E  L D      K++DFG  A   ++ + +   TR Y  PE I R  Y      +WS 
Sbjct: 166 KDENILIDLRRGCAKLIDFGSGALLHDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSL 225

Query: 300 ACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDL 359
                    G +L+                 M  + G +P             F+     
Sbjct: 226 ---------GILLYD----------------M--VCGDIP-------------FE---RD 242

Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
           + I   +              S  D       +   L   P  RP+ ++ L  PW+
Sbjct: 243 QEILEAELHF-------PAHVS-PDCC---ALIRRCLAPKPSSRPSLEEILLDPWM 287

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 64.5 bits (157), Expect = 1e-11
 Identities = 35/179 (19%), Positives = 55/179 (30%), Gaps = 64/179 (35%)

Query: 252 DMRCKVVDFGNAC---------------RANKQFAEEIQTRQYRAPEVILRAGYSFSVDM 296
           D   KV DFG                   A      ++ T+ Y +PE I    YS  VD+
Sbjct: 200 DDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDI 259

Query: 297 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 356
           +S     FE     +L++  +              ME                     R 
Sbjct: 260 FSLGLILFE-----LLYSFSTQ-------------ME---------------------RV 280

Query: 357 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
             +  +R LKF     L   KY        +    +  +L  +P +RP A   +++   
Sbjct: 281 RIITDVRNLKF---PLLFTQKY-------PQEHMMVQDMLSPSPTERPEATDIIENAIF 329

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 62.2 bits (151), Expect = 7e-11
 Identities = 24/191 (12%), Positives = 54/191 (28%), Gaps = 52/191 (27%)

Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKI--QKSAAQFAQAALHEIEVLSAV------ 89
           +   + +G G F +V+ A +       A+K     +     +  + E++ L+ +      
Sbjct: 8   FEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIV 67

Query: 90  -----------------------------------------ADGDPSNEKCVIRLIDHFK 108
                                                    +      +    +      
Sbjct: 68  RYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQL 127

Query: 109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKG-LELNKVREICKYILTGLDYLHRELGII 166
                  +L + ++    ++L   +         E      I   I   +++LH + G++
Sbjct: 128 QPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHSK-GLM 186

Query: 167 HTDLKPENILL 177
           H DLKP NI  
Sbjct: 187 HRDLKPSNIFF 197

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 28/171 (16%)

Query: 256 KVVDFGNACRA--------NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFEL 306
           K+ DFG A RA          ++   + T  YR PE++L    Y   +D+W   C   E+
Sbjct: 164 KLADFGLA-RAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEM 222

Query: 307 ATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLK 366
            T   +    +      ++  LAL+ +L G            + + +    + +   +L+
Sbjct: 223 WTRSPIMQGNT------EQHQLALISQLCG-SI---------TPEVWPNVDNYELYEKLE 266

Query: 367 FW-SLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
                 R + D+ +    D     + +  LL   P +R  +   L H +  
Sbjct: 267 LVKGQKRKVKDRLKAYVRDPYAL-DLIDKLLVLDPAQRIDSDDALNHDFFW 316

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 61.9 bits (151), Expect = 9e-11
 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 15/142 (10%)

Query: 43  KLGWGQFSIVWLAYDTRTSSYVALK---IQKSAAQFAQAALHEIEVLSAVADGDPSNEKC 99
           K+G G F  V+ A   +T   VALK   ++     F   AL EI++L  +        + 
Sbjct: 24  KIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLL------KHEN 77

Query: 100 VIRLID----HFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTG 155
           V+ LI+               + +V +F    L  L+  +      L++++ + + +L G
Sbjct: 78  VVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLS-NVLVKFTLSEIKRVMQMLLNG 136

Query: 156 LDYLHRELGIIHTDLKPENILL 177
           L Y+HR   I+H D+K  N+L+
Sbjct: 137 LYYIHRN-KILHRDMKAANVLI 157

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A Length = 364

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 27/161 (16%), Positives = 58/161 (36%), Gaps = 19/161 (11%)

Query: 31  DLFNGGRYIAQRKLGWGQFSIVWLAY-----DTRTSSYVALKIQKSAAQFAQAALHEIEV 85
                  +     +G G F  ++LA         + +   +K++ S          E++ 
Sbjct: 30  TDMAAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNG---PLFTELKF 86

Query: 86  LSAVADGDPSNEKCVIRLIDHF---------KHAGPNGQHLCMVLEFLGDSLLRLIKYSR 136
               A  +   +    R + +           H      +  M+++  G  L ++ + + 
Sbjct: 87  YQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRFGSDLQKIYEANA 146

Query: 137 YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
            +      V ++   IL  L+Y+H E   +H D+K  N+LL
Sbjct: 147 KR-FSRKTVLQLSLRILDILEYIH-EHEYVHGDIKASNLLL 185

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 63.2 bits (154), Expect = 5e-11
 Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 21/141 (14%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRL 103
           LG G F  V L  +  T  Y A+KI K         + + EV   +       E  V++ 
Sbjct: 156 LGKGTFGKVILVKEKATGRYYAMKILKKEV-----IVAKDEVAHTLT------ENRVLQN 204

Query: 104 IDH-F----KHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGL 156
             H F    K++      LC V+E+   G+    L   SR +    ++ R     I++ L
Sbjct: 205 SRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHL---SRERVFSEDRARFYGAEIVSAL 261

Query: 157 DYLHRELGIIHTDLKPENILL 177
           DYLH E  +++ DLK EN++L
Sbjct: 262 DYLHSEKNVVYRDLKLENLML 282

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 15/97 (15%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWS 298
           K E  +   D   K+ DFG  C+   +    ++    T +Y APEV+    Y  +VD W 
Sbjct: 276 KLENLMLDKDGHIKITDFG-LCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWG 334

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI 335
                +E+  G + F       + +D +    + ELI
Sbjct: 335 LGVVMYEMMCGRLPF-------YNQDHEK---LFELI 361

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.3 bits (153), Expect = 9e-11
 Identities = 63/421 (14%), Positives = 123/421 (29%), Gaps = 116/421 (27%)

Query: 84  EVLS-AVAD---GDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSL----------- 128
            +LS    D            +RL                V +F+ + L           
Sbjct: 44  SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM-----VQKFVEEVLRINYKFLMSPI 98

Query: 129 --------LRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV-- 178
                   +    Y   +    N  +   KY ++ L   + +L     +L+P   +L+  
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ-PYLKLRQALLELRPAKNVLIDG 157

Query: 179 ------STIDPSKDPIRSGLTPILERPEGSI---NGGSTSTMTIVEKKLKRRAKRAVANI 229
                 + +  + D   S    +  + +  I   N  + ++   V + L++   +   N 
Sbjct: 158 VLGSGKTWV--ALDVCLS--YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 230 SIRRASMGGIELP--------------KP-ERCL------------DGIDMRCKVVDFGN 262
           + R      I+L               KP E CL            +  ++ CK++    
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL---- 269

Query: 263 ACRANKQFAEEIQTRQYRAPEVILRAGYS-FSVDMWSFACTAFELATGDMLFAPKSGQGF 321
                      + TR  +  + +  A  +  S+D  S   T  E+ +   L         
Sbjct: 270 -----------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS---LLLKYLD--- 312

Query: 322 CEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYR-F 380
           C  +D   L  E++   PR+++I     +D           + +    L  ++       
Sbjct: 313 CRPQD---LPREVLTTNPRRLSIIAESIRDGLAT---WDNWKHVNCDKLTTIIESSLNVL 366

Query: 381 SETDARE-FAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDET-------KNKSNVE 432
              + R+ F    V    F P         L   W    +  + +           S VE
Sbjct: 367 EPAEYRKMFDRLSV----F-PPSAHIPTILLSLIWF---DVIKSDVMVVVNKLHKYSLVE 418

Query: 433 K 433
           K
Sbjct: 419 K 419

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 5e-07
 Identities = 55/407 (13%), Positives = 102/407 (25%), Gaps = 138/407 (33%)

Query: 52  VWLAYD--------TR----TSSYVALKIQKSAAQFAQAALHEIEVLSAVAD------GD 93
            W A++        TR    T    A      +       L   EV S +         D
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYIL 153
              E               N + L ++ E + D L     +      +L  + E    +L
Sbjct: 318 LPREVLTT-----------NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 154 TGLDY--LHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL--ERPEGSINGGSTS 209
              +Y  +   L +      P +             I + L  ++  +  +       + 
Sbjct: 367 EPAEYRKMFDRLSVF-----PPSA-----------HIPTILLSLIWFDVIK-------SD 403

Query: 210 TMTIVE---KK--LKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC 264
            M +V    K   ++++ K           S+  I L    +  +   +   +VD     
Sbjct: 404 VMVVVNKLHKYSLVEKQPKE-------STISIPSIYLELKVKLENEYALHRSIVD----- 451

Query: 265 RANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCED 324
                         Y  P+         + D              D  F    G      
Sbjct: 452 -------------HYNIPK---------TFDSDDLI-----PPYLDQYFYSHIG------ 478

Query: 325 EDHL--ALMMELIGKMPRKIAIGGAQSKDYFD--------RHGDLKRIRRLKFWSLDRLL 374
             HL      E +                + D        RH            S+   L
Sbjct: 479 -HHLKNIEHPERMTLFRMV----------FLDFRFLEQKIRHDSTAWNAS---GSILNTL 524

Query: 375 VD--KYR--FSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 417
                Y+    + D  ++   +  +LDF P+     +  +   +  L
Sbjct: 525 QQLKFYKPYICDNDP-KYERLVNAILDFLPK---IEENLICSKYTDL 567

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 66/392 (16%), Positives = 114/392 (29%), Gaps = 122/392 (31%)

Query: 59  RTSSYVALK----IQKSAAQFAQAALHEIEVLSAVADG--------DPSNEKCVIRLIDH 106
           R +  V +       K+    A       +V   +             S E  +  L   
Sbjct: 148 RPAKNVLIDGVLGSGKTW--VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205

Query: 107 FKHAGPNGQHLC-------MVLEFLGDSLLRLIKYSRYKG--LELNKVR--EI------- 148
                PN            + +  +   L RL+K   Y+   L L  V+  +        
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265

Query: 149 CKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGST 208
           CK +LT      R   +    L         T   S D     LTP     E        
Sbjct: 266 CKILLTT-----RFKQVT-DFLSAAT-----TTHISLDHHSMTLTP----DE-------- 302

Query: 209 STMTIVEKKLKRRAK---RAVANISIRRASMGGIELPKPERCLDGIDM--RCKVVDFGNA 263
              +++ K L  R +   R V   + RR S+        E   DG+      K V+    
Sbjct: 303 -VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA------ESIRDGLATWDNWKHVNCDKL 355

Query: 264 CRANKQFAEEIQTRQYRA--------------PEVILRAGYSFSVDMWSFACTAFELATG 309
               +     ++  +YR               P ++L      S+ +W            
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL------SL-IW-----------F 397

Query: 310 DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY----FDRHGDLKRIRRL 365
           D+              D    +M ++ K+ +   +   Q K+        + +LK     
Sbjct: 398 DV-----------IKSD----VMVVVNKLHKYSLVEK-QPKESTISIPSIYLELKVKLEN 441

Query: 366 KFWSLDRLLVDKYRFSETDAREFAEFLVPLLD 397
           ++ +L R +VD Y        +  + + P LD
Sbjct: 442 EY-ALHRSIVDHYNI--PKTFDSDDLIPPYLD 470

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 18/141 (12%)

Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAA--LHEIEVLSAVADGDPSNE 97
           + LG G FS V LA +  TS   A+KI +     +  +      E +V+S +      + 
Sbjct: 36  KILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL------DH 89

Query: 98  KCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGL 156
              ++L   F+    + + L   L +     LL+ I+  +    +    R     I++ L
Sbjct: 90  PFFVKLYFTFQ----DDEKLYFGLSYAKNGELLKYIR--KIGSFDETCTRFYTAEIVSAL 143

Query: 157 DYLHRELGIIHTDLKPENILL 177
           +YLH   GIIH DLKPENILL
Sbjct: 144 EYLH-GKGIIHRDLKPENILL 163

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 56.5 bits (137), Expect = 5e-09
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 13/76 (17%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ---------TRQYRAPEVILRAGYSFS 293
           KPE  L   DM  ++ DFG A    K  + E +         T QY +PE++       S
Sbjct: 157 KPENILLNEDMHIQITDFGTA----KVLSPESKQARANSFVGTAQYVSPELLTEKSACKS 212

Query: 294 VDMWSFACTAFELATG 309
            D+W+  C  ++L  G
Sbjct: 213 SDLWALGCIIYQLVAG 228

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 24/144 (16%)

Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAA--LHEIEVLSAVADGDPSNE 97
           + LG G F  V L     + ++ A+KI       +  Q    L+E  +L AV      N 
Sbjct: 47  KTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAV------NF 100

Query: 98  KCVIRLIDHFKHAGPNGQHLCMVLEFL--GD--SLLRLIKYSRYKGLELNKVREICKYIL 153
             +++L   FK    +  +L MV+E++  G+  S LR     R         R     I+
Sbjct: 101 PFLVKLEFSFK----DNSNLYMVMEYVAGGEMFSHLR-----RIGRFSEPHARFYAAQIV 151

Query: 154 TGLDYLHRELGIIHTDLKPENILL 177
              +YLH  L +I+ DLKPEN+L+
Sbjct: 152 LTFEYLH-SLDLIYRDLKPENLLI 174

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 20/77 (25%)

Query: 243 KPERCLDGIDMR--CKVVDFGNACRANKQFAEEIQTR--------QYRAPEVILRAGYSF 292
           KPE  L  ID +   +V DFG        FA+ ++ R        +  APE+IL  GY+ 
Sbjct: 168 KPENLL--IDQQGYIQVTDFG--------FAKRVKGRTWTLCGTPEALAPEIILSKGYNK 217

Query: 293 SVDMWSFACTAFELATG 309
           +VD W+     +E+A G
Sbjct: 218 AVDWWALGVLIYEMAAG 234

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 60.1 bits (146), Expect = 4e-10
 Identities = 29/146 (19%), Positives = 60/146 (41%), Gaps = 21/146 (14%)

Query: 41  QRKLGWGQFSIVWLA-YDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKC 99
            +++G G++  VW+  +       VA+K+  +  +   +   E E+   V          
Sbjct: 42  VKQIGKGRYGEVWMGKWR---GEKVAVKVFFTTEE--ASWFRETEIYQTVLMRHE----N 92

Query: 100 VIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDY 158
           ++  I        +   L ++ ++    SL   +K      L+   + ++    ++GL +
Sbjct: 93  ILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKS---TTLDAKSMLKLAYSSVSGLCH 149

Query: 159 LHREL-------GIIHTDLKPENILL 177
           LH E+        I H DLK +NIL+
Sbjct: 150 LHTEIFSTQGKPAIAHRDLKSKNILV 175

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 13/80 (16%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ-------TRQYRAPEVILRAG------ 289
           K +  L   +  C + D G A +      E          T++Y  PEV+  +       
Sbjct: 169 KSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQ 228

Query: 290 YSFSVDMWSFACTAFELATG 309
                DM+SF    +E+A  
Sbjct: 229 SYIMADMYSFGLILWEVARR 248

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 59.4 bits (144), Expect = 6e-10
 Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 21/146 (14%)

Query: 41  QRKLGWGQFSIVWLA-YDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKC 99
           Q  +G G+F  VW   +       VA+KI  S  +  ++   E E+   V          
Sbjct: 47  QESIGKGRFGEVWRGKWRGEE---VAVKIFSS--REERSWFREAEIYQTVMLRHE----N 97

Query: 100 VIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDY 158
           ++  I            L +V ++    SL   +       + +  + ++     +GL +
Sbjct: 98  ILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAH 154

Query: 159 LHREL-------GIIHTDLKPENILL 177
           LH E+        I H DLK +NIL+
Sbjct: 155 LHMEIVGTQGKPAIAHRDLKSKNILV 180

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 43.6 bits (103), Expect = 7e-05
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 13/80 (16%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ-------TRQYRAPEVILRAG------ 289
           K +  L   +  C + D G A R +               T++Y APEV+  +       
Sbjct: 174 KSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFE 233

Query: 290 YSFSVDMWSFACTAFELATG 309
                D+++     +E+A  
Sbjct: 234 SFKRADIYAMGLVFWEIARR 253

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 22/141 (15%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRL 103
           LG G F  V L  +  T  Y A+KI +         + + EV   V       E  V++ 
Sbjct: 13  LGKGTFGKVILVREKATGRYYAMKILRKEV-----IIAKDEVAHTVT------ESRVLQN 61

Query: 104 IDH-F----KHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGL 156
             H F    K+A      LC V+E+   G+    L   SR +     + R     I++ L
Sbjct: 62  TRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHL---SRERVFTEERARFYGAEIVSAL 118

Query: 157 DYLHRELGIIHTDLKPENILL 177
           +YLH    +++ D+K EN++L
Sbjct: 119 EYLH-SRDVVYRDIKLENLML 138

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 44.1 bits (105), Expect = 6e-05
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 15/97 (15%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWS 298
           K E  +   D   K+ DFG  C+        ++    T +Y APEV+    Y  +VD W 
Sbjct: 132 KLENLMLDKDGHIKITDFG-LCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWG 190

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI 335
                +E+  G + F       + +D +    + ELI
Sbjct: 191 LGVVMYEMMCGRLPF-------YNQDHER---LFELI 217

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 21/141 (14%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRL 103
           +G G FS V +    +T    A+KI        +      EV           E+ V+  
Sbjct: 69  IGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRG-----EVSCFRE------ERDVLVN 117

Query: 104 IDH-----FKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGL 156
            D         A  +  +L +V+E+   GD L  L K+     +     R     I+  +
Sbjct: 118 GDRRWITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKFGER--IPAEMARFYLAEIVMAI 175

Query: 157 DYLHRELGIIHTDLKPENILL 177
           D +H  LG +H D+KP+NILL
Sbjct: 176 DSVH-RLGYVHRDIKPDNILL 195

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 19/140 (13%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAA--LHEIEVLSAVADGDPSNEKC 99
           +G G F  V +          A+KI       + A+ A    E +VL         + K 
Sbjct: 82  IGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNG------DSKW 135

Query: 100 VIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLD 157
           +  L   F+    +  +L +V+++   GD L  L K+     L     R     ++  +D
Sbjct: 136 ITTLHYAFQ----DDNNLYLVMDYYVGGDLLTLLSKFEDR--LPEEMARFYLAEMVIAID 189

Query: 158 YLHRELGIIHTDLKPENILL 177
            +H +L  +H D+KP+NIL+
Sbjct: 190 SVH-QLHYVHRDIKPDNILM 208

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 31/160 (19%), Positives = 54/160 (33%), Gaps = 39/160 (24%)

Query: 243 KPERCLDGIDMR--CKVVDFGNACRANKQFAEEIQTR------QYRAPEVIL-----RAG 289
           KP+  L  +DM    ++ DFG+  +  +     +Q+        Y +PE++      +  
Sbjct: 202 KPDNIL--MDMNGHIRLADFGSCLKLMED--GTVQSSVAVGTPDYISPEILQAMEGGKGR 257

Query: 290 YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS 349
           Y    D WS     +E+  G+  F           E  +      I  M  K        
Sbjct: 258 YGPECDWWSLGVCMYEMLYGETPF---------YAESLVE-TYGKI--MNHKERFQFPTQ 305

Query: 350 KDYFDRHG-DLKRIRRLKFWSLDRLLVDKYRFSETDAREF 388
                 +  DL  IRRL       +   ++R  +    +F
Sbjct: 306 VTDVSENAKDL--IRRL-------ICSREHRLGQNGIEDF 336

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 24/154 (15%)

Query: 37  RYIAQ-----RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVAD 91
           R +A+       +G G++  VW    +     VA+KI  S  +  ++   E E+ + V  
Sbjct: 4   RTVARDITLLECVGKGRYGEVWRG--SWQGENVAVKIFSS--RDEKSWFRETELYNTVM- 58

Query: 92  GDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICK 150
                 + ++  I     +  +   L ++  +    SL   ++      L+      I  
Sbjct: 59  ---LRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQL---TTLDTVSCLRIVL 112

Query: 151 YILTGLDYLHREL-------GIIHTDLKPENILL 177
            I +GL +LH E+        I H DLK +NIL+
Sbjct: 113 SIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILV 146

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 13/80 (16%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ-------TRQYRAPEVI------LRAG 289
           K +  L   + +C + D G A   ++   +          T++Y APEV+          
Sbjct: 140 KSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFD 199

Query: 290 YSFSVDMWSFACTAFELATG 309
               VD+W+F    +E+A  
Sbjct: 200 SYKRVDIWAFGLVLWEVARR 219

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 57.5 bits (140), Expect = 2e-09
 Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 36/148 (24%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAA--LHEIEVLSAVADGDPSNEKC 99
           LG G F  V L        Y A+K+ K     +  Q      E  +LS V          
Sbjct: 14  LGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIV--------TH 65

Query: 100 --VIRLIDHFKHAGPNGQHLCMVLEFL--GD--SLLRLIKYSRYKGLELNKVR----EIC 149
             +IR+   F+    + Q + M+++++  G+  SLLR     + +       +    E+ 
Sbjct: 66  PFIIRMWGTFQ----DAQQIFMIMDYIEGGELFSLLR-----KSQRFPNPVAKFYAAEV- 115

Query: 150 KYILTGLDYLHRELGIIHTDLKPENILL 177
                 L+YLH    II+ DLKPENILL
Sbjct: 116 ---CLALEYLH-SKDIIYRDLKPENILL 139

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 20/77 (25%)

Query: 243 KPERCLDGIDMR--CKVVDFGNACRANKQFAEEIQTR--------QYRAPEVILRAGYSF 292
           KPE  L  +D     K+ DFG        FA+ +            Y APEV+    Y+ 
Sbjct: 133 KPENIL--LDKNGHIKITDFG--------FAKYVPDVTYTLCGTPDYIAPEVVSTKPYNK 182

Query: 293 SVDMWSFACTAFELATG 309
           S+D WSF    +E+  G
Sbjct: 183 SIDWWSFGILIYEMLAG 199

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 57.2 bits (137), Expect = 3e-09
 Identities = 32/187 (17%), Positives = 51/187 (27%), Gaps = 46/187 (24%)

Query: 31  DLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI---------QKSAAQFAQAALH 81
                 +     K+G G F  V+      T   VA+KI           S  +  +  L 
Sbjct: 15  HCLPTEKLQRCEKIGEGVFGEVFQTIADHTP--VAIKIIAIEGPDLVNGSHQKTFEEILP 72

Query: 82  EIEVLSAVAD---GDPSNEKCVIRLIDHFKHAG--------------------------- 111
           EI +   ++       +  +  I L       G                           
Sbjct: 73  EIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFF 132

Query: 112 -PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDL 170
             +   + +  EF G  L ++      K   L   + I   +   L      L   H DL
Sbjct: 133 KDDQLFIVLEFEFGGIDLEQMRT----KLSSLATAKSILHQLTASLAVAEASLRFEHRDL 188

Query: 171 KPENILL 177
              N+LL
Sbjct: 189 HWGNVLL 195

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 56.8 bits (137), Expect = 5e-09
 Identities = 28/159 (17%), Positives = 50/159 (31%), Gaps = 45/159 (28%)

Query: 41  QRKLGWGQFSIVWLA-YDTRTSSYVALKI--QKSAAQFAQAALHEIEVLSAVADGDPSNE 97
              +G G++  V+    D      VA+K+    +   F      E  +            
Sbjct: 18  LELIGRGRYGAVYKGSLD---ERPVAVKVFSFANRQNFIN----EKNIYR---------- 60

Query: 98  KCVIRLIDH----------FKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVR 146
              + L++H           +          +V+E+    SL + +        +     
Sbjct: 61  ---VPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHT---SDWVSSC 114

Query: 147 EICKYILTGLDYLHREL--------GIIHTDLKPENILL 177
            +   +  GL YLH EL         I H DL   N+L+
Sbjct: 115 RLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLV 153

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 57.2 bits (138), Expect = 5e-09
 Identities = 38/142 (26%), Positives = 58/142 (40%), Gaps = 17/142 (11%)

Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNE 97
           R +G G F  V+      T    A+K          Q    AL+E  +LS V+ GD    
Sbjct: 195 RIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDC--- 251

Query: 98  KCVIRLIDHFKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTG 155
                 I    +A      L  +L+ +  GD    L   S++       +R     I+ G
Sbjct: 252 ----PFIVCMSYAFHTPDKLSFILDLMNGGDLHYHL---SQHGVFSEADMRFYAAEIILG 304

Query: 156 LDYLHRELGIIHTDLKPENILL 177
           L+++H    +++ DLKP NILL
Sbjct: 305 LEHMH-NRFVVYRDLKPANILL 325

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR----QYRAPEVILR-AGYSFSVDMW 297
           KP   L       ++ D G AC  +K   ++         Y APEV+ +   Y  S D +
Sbjct: 319 KPANILLDEHGHVRISDLGLACDFSK---KKPHASVGTHGYMAPEVLQKGVAYDSSADWF 375

Query: 298 SFACTAFELATG 309
           S  C  F+L  G
Sbjct: 376 SLGCMLFKLLRG 387

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 55.9 bits (135), Expect = 8e-09
 Identities = 33/147 (22%), Positives = 59/147 (40%), Gaps = 21/147 (14%)

Query: 41  QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCV 100
                 G+F  VW A     + YVA+KI     + +    +E+  L  +        + +
Sbjct: 29  LEVKARGRFGCVWKA--QLLNEYVAVKIFPIQDKQSWQNEYEVYSLPGM------KHENI 80

Query: 101 IRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYL 159
           ++ I   K        L ++  F    SL   +K +    +  N++  I + +  GL YL
Sbjct: 81  LQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKANV---VSWNELCHIAETMARGLAYL 137

Query: 160 HREL---------GIIHTDLKPENILL 177
           H ++          I H D+K +N+LL
Sbjct: 138 HEDIPGLKDGHKPAISHRDIKSKNVLL 164

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 252 DMRCKVVDFGNACRANKQFAEEIQ-----TRQYRAPEVI-----LRAGYSFSVDMWSFAC 301
           ++   + DFG A +     +         TR+Y APEV+      +      +DM++   
Sbjct: 167 NLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGL 226

Query: 302 TAFELATG 309
             +ELA+ 
Sbjct: 227 VLWELASR 234

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 56.2 bits (136), Expect = 9e-09
 Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 21/140 (15%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRL 103
           +G G F  V L     T    A+K+           L + E++          E+ ++  
Sbjct: 77  IGRGAFGEVQLVRHKSTRKVYAMKL-----------LSKFEMIKRSDSAFFWEERDIMAF 125

Query: 104 IDH-----FKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLD 157
            +        +A  + ++L MV+E++ G  L+ L+       +     R     ++  LD
Sbjct: 126 ANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLM---SNYDVPEKWARFYTAEVVLALD 182

Query: 158 YLHRELGIIHTDLKPENILL 177
            +H  +G IH D+KP+N+LL
Sbjct: 183 AIH-SMGFIHRDVKPDNMLL 201

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 12/77 (15%)

Query: 243 KPERCLDGIDMR--CKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAG----YSF 292
           KP+  L  +D     K+ DFG   + NK+          T  Y +PEV+   G    Y  
Sbjct: 195 KPDNML--LDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGR 252

Query: 293 SVDMWSFACTAFELATG 309
             D WS     +E+  G
Sbjct: 253 ECDWWSVGVFLYEMLVG 269

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 54.8 bits (132), Expect = 3e-08
 Identities = 36/140 (25%), Positives = 51/140 (36%), Gaps = 18/140 (12%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRL 103
           LG G F  V       T    A K  +      +          A+      NEK ++  
Sbjct: 192 LGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRK-----GEAMAL------NEKQILEK 240

Query: 104 IDH-----FKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLD 157
           ++        +A      LC+VL  + G  L   I +    G    +       I  GL+
Sbjct: 241 VNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLE 300

Query: 158 YLHRELGIIHTDLKPENILL 177
            LH    I++ DLKPENILL
Sbjct: 301 DLH-RERIVYRDLKPENILL 319

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 50.6 bits (121), Expect = 7e-07
 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 10/73 (13%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ------YRAPEVILRAGYSFSVDM 296
           KPE  L       ++ D G A        E    +       Y APEV+    Y+FS D 
Sbjct: 313 KPENILLDDHGHIRISDLGLA----VHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDW 368

Query: 297 WSFACTAFELATG 309
           W+  C  +E+  G
Sbjct: 369 WALGCLLYEMIAG 381

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 54.8 bits (132), Expect = 3e-08
 Identities = 34/142 (23%), Positives = 54/142 (38%), Gaps = 20/142 (14%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRL 103
           LG G F  V+      T    A K         +          A+       EK ++  
Sbjct: 193 LGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRK-----GYQGAM------VEKKILAK 241

Query: 104 IDH-F----KHAGPNGQHLCMVLEFL--GDSLLRLIKY-SRYKGLELNKVREICKYILTG 155
           +   F     +A      LC+V+  +  GD    +        G +  +       I++G
Sbjct: 242 VHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSG 301

Query: 156 LDYLHRELGIIHTDLKPENILL 177
           L++LH +  II+ DLKPEN+LL
Sbjct: 302 LEHLH-QRNIIYRDLKPENVLL 322

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR----QYRAPEVILRAGYSFSVDMWS 298
           KPE  L   D   ++ D G      K    + +       + APE++L   Y FSVD ++
Sbjct: 316 KPENVLLDDDGNVRISDLG-LAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFA 374

Query: 299 FACTAFELATG 309
              T +E+   
Sbjct: 375 LGVTLYEMIAA 385

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 116 HLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPE 173
           +L  V+E+L  GD +  +         +L++       I+ GL +LH   GI++ DLK +
Sbjct: 92  NLFFVMEYLNGGDLMYHI---QSCHKFDLSRATFYAAEIILGLQFLH-SKGIVYRDLKLD 147

Query: 174 NILL 177
           NILL
Sbjct: 148 NILL 151

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 43.7 bits (104), Expect = 7e-05
 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 15/97 (15%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWS 298
           K +  L   D   K+ DFG  C+ N     +      T  Y APE++L   Y+ SVD WS
Sbjct: 145 KLDNILLDKDGHIKIADFG-MCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWS 203

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI 335
           F    +E+  G   F         +DE+    +   I
Sbjct: 204 FGVLLYEMLIGQSPF-------HGQDEEE---LFHSI 230

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 53.0 bits (128), Expect = 7e-08
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 116 HLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPE 173
            L  VL+++  G+    L    R +     + R     I + L YLH  L I++ DLKPE
Sbjct: 113 KLYFVLDYINGGELFYHL---QRERCFLEPRARFYAAEIASALGYLH-SLNIVYRDLKPE 168

Query: 174 NILL 177
           NILL
Sbjct: 169 NILL 172

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 19/99 (19%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR------QYRAPEVILRAGYSFSVDM 296
           KPE  L        + DFG  C+ N        T       +Y APEV+ +  Y  +VD 
Sbjct: 166 KPENILLDSQGHIVLTDFG-LCKEN--IEHNSTTSTFCGTPEYLAPEVLHKQPYDRTVDW 222

Query: 297 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI 335
           W      +E+  G   F       +  +      M + I
Sbjct: 223 WCLGAVLYEMLYGLPPF-------YSRNTAE---MYDNI 251

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 53.0 bits (128), Expect = 7e-08
 Identities = 34/142 (23%), Positives = 53/142 (37%), Gaps = 23/142 (16%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRL 103
           LG G F  V L+    T    A+KI K         + + +V   +       EK V+ L
Sbjct: 28  LGKGSFGKVMLSERKGTDELYAVKILKKDV-----VIQDDDVECTMV------EKRVLAL 76

Query: 104 IDH--F----KHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTG 155
                F             L  V+E++  GD +  +    +    +          I  G
Sbjct: 77  PGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHI---QQVGRFKEPHAVFYAAEIAIG 133

Query: 156 LDYLHRELGIIHTDLKPENILL 177
           L +L    GII+ DLK +N++L
Sbjct: 134 LFFLQ-SKGIIYRDLKLDNVML 154

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 19/99 (19%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR------QYRAPEVILRAGYSFSVDM 296
           K +  +   +   K+ DFG  C+ N    + + T+       Y APE+I    Y  SVD 
Sbjct: 148 KLDNVMLDSEGHIKIADFG-MCKEN--IWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDW 204

Query: 297 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI 335
           W+F    +E+  G   F         EDED    + + I
Sbjct: 205 WAFGVLLYEMLAGQAPF-------EGEDEDE---LFQSI 233

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 6/64 (9%)

Query: 116 HLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPE 173
            L  V+EF+  GD +  +    + +  +  + R     I++ L +LH + GII+ DLK +
Sbjct: 98  RLFFVMEFVNGGDLMFHI---QKSRRFDEARARFYAAEIISALMFLH-DKGIIYRDLKLD 153

Query: 174 NILL 177
           N+LL
Sbjct: 154 NVLL 157

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 15/101 (14%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWS 298
           K +  L   +  CK+ DFG  C+              T  Y APE++    Y  +VD W+
Sbjct: 151 KLDNVLLDHEGHCKLADFG-MCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWA 209

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMP 339
                +E+  G   F         E+ED    + E I    
Sbjct: 210 MGVLLYEMLCGHAPF-------EAENEDD---LFEAILNDE 240

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 36/142 (25%), Positives = 55/142 (38%), Gaps = 23/142 (16%)

Query: 44  LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRL 103
           LG G F  V L+    T    A+KI K         + + +V   +       EK V+ L
Sbjct: 349 LGKGSFGKVMLSERKGTDELYAVKILKKDV-----VIQDDDVECTMV------EKRVLAL 397

Query: 104 IDH--F----KHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTG 155
                F             L  V+E++  GD +  + +  R+K             I  G
Sbjct: 398 PGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVGRFK---EPHAVFYAAEIAIG 454

Query: 156 LDYLHRELGIIHTDLKPENILL 177
           L +L    GII+ DLK +N++L
Sbjct: 455 LFFLQ-SKGIIYRDLKLDNVML 475

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 15/97 (15%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWS 298
           K +  +   +   K+ DFG  C+ N       +    T  Y APE+I    Y  SVD W+
Sbjct: 469 KLDNVMLDSEGHIKIADFG-MCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWA 527

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI 335
           F    +E+  G   F         EDED    + + I
Sbjct: 528 FGVLLYEMLAGQAPF-------EGEDEDE---LFQSI 554

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 115 QHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKP 172
             L ++L+FL  GD   RL   S+        V+     +   LD+LH  LGII+ DLKP
Sbjct: 99  GKLYLILDFLRGGDLFTRL---SKEVMFTEEDVKFYLAELALALDHLH-SLGIIYRDLKP 154

Query: 173 ENILL 177
           ENILL
Sbjct: 155 ENILL 159

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 9/73 (12%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR------QYRAPEVILRAGYSFSVDM 296
           KPE  L   +   K+ DFG   + +     E +        +Y APEV+ R G++ S D 
Sbjct: 153 KPENILLDEEGHIKLTDFG-LSKES--IDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADW 209

Query: 297 WSFACTAFELATG 309
           WSF    FE+ TG
Sbjct: 210 WSFGVLMFEMLTG 222

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 6/64 (9%)

Query: 116 HLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPE 173
            L  V+E++  GD +  +    R + L     R     I   L+YLH E GII+ DLK +
Sbjct: 127 RLFFVIEYVNGGDLMFHM---QRQRKLPEEHARFYSAEISLALNYLH-ERGIIYRDLKLD 182

Query: 174 NILL 177
           N+LL
Sbjct: 183 NVLL 186

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWS 298
           K +  L   +   K+ D+G  C+   +  +       T  Y APE++    Y FSVD W+
Sbjct: 180 KLDNVLLDSEGHIKLTDYG-MCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWA 238

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI 335
                FE+  G   F         +       + ++I
Sbjct: 239 LGVLMFEMMAGRSPFDIVGSSDNPDQNTE-DYLFQVI 274

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 6/64 (9%)

Query: 116 HLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPE 173
            L ++LE+L  G+  ++L    R      +        I   L +LH + GII+ DLKPE
Sbjct: 95  KLYLILEYLSGGELFMQL---EREGIFMEDTACFYLAEISMALGHLH-QKGIIYRDLKPE 150

Query: 174 NILL 177
           NI+L
Sbjct: 151 NIML 154

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWS 298
           KPE  +       K+ DFG  C+ +            T +Y APE+++R+G++ +VD WS
Sbjct: 148 KPENIMLNHQGHVKLTDFG-LCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWS 206

Query: 299 FACTAFELATG 309
                +++ TG
Sbjct: 207 LGALMYDMLTG 217

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 38/151 (25%), Positives = 58/151 (38%), Gaps = 29/151 (19%)

Query: 41  QRKLGWGQFSIVWLAY----DTRTSSYVALKIQKSAAQFAQAA--LHEIEVLSAVADGDP 94
            R LG G F  V L      +  T   VA+K  K+ A     +    EI++L  +     
Sbjct: 36  IRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTL----- 90

Query: 95  SNEKCVIRLIDHFKHAG----PNGQHLCMVLEF--LGDSLLRLIKYSRYKGLELNKVREI 148
              + +I+        G         L +V+E+  LG     L  Y     + L ++   
Sbjct: 91  -YHEHIIKYK------GCCEDAGAASLQLVMEYVPLGS----LRDYLPRHSIGLAQLLLF 139

Query: 149 CKYILTGLDYLHRELGIIHTDLKPENILLVS 179
            + I  G+ YLH     IH DL   N+LL +
Sbjct: 140 AQQICEGMAYLH-AQHYIHRDLAARNVLLDN 169

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 6/64 (9%)

Query: 116 HLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPE 173
            L  V+E++  GD +  +    R + L     R     I   L+YLH E GII+ DLK +
Sbjct: 84  RLFFVIEYVNGGDLMFHM---QRQRKLPEEHARFYSAEISLALNYLH-ERGIIYRDLKLD 139

Query: 174 NILL 177
           N+LL
Sbjct: 140 NVLL 143

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 49.5 bits (119), Expect = 9e-07
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWS 298
           K +  L   +   K+ D+G  C+   +  +       T  Y APE++    Y FSVD W+
Sbjct: 137 KLDNVLLDSEGHIKLTDYG-MCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWA 195

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI 335
                FE+  G   F         +       + ++I
Sbjct: 196 LGVLMFEMMAGRSPFDIVGSSDNPDQNTE-DYLFQVI 231

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 22/143 (15%)

Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVI 101
           R +G G F  V +     T    A+K              +    + V +     E  ++
Sbjct: 21  RAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQ---------KCVERNEVRN--VFKELQIM 69

Query: 102 RLIDH-F----KHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILT 154
           + ++H F     ++  + + + MV++ L  GD    L    +    +   V+     ++ 
Sbjct: 70  QGLEHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHL---QQNVHFKEETVKLFICELVM 126

Query: 155 GLDYLHRELGIIHTDLKPENILL 177
            LDYL     IIH D+KP+NILL
Sbjct: 127 ALDYLQ-NQRIIHRDMKPDNILL 148

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 35/186 (18%), Positives = 54/186 (29%), Gaps = 63/186 (33%)

Query: 243 KPERCLDGIDMR--CKVVDFGNACRANKQFAEEIQ------TRQYRAPEVILR---AGYS 291
           KP+  L  +D      + DF  A         E Q      T+ Y APE+      AGYS
Sbjct: 142 KPDNIL--LDEHGHVHITDFNIA----AMLPRETQITTMAGTKPYMAPEMFSSRKGAGYS 195

Query: 292 FSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD 351
           F+VD WS   TA+EL  G   +                 ++                   
Sbjct: 196 FAVDWWSLGVTAYELLRGRRPY-------HIRSSTSSKEIVHTF---------------- 232

Query: 352 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKR-PTAQQCL 410
                                       +    ++E    L  LL+  P++R        
Sbjct: 233 ----------------------ETTVVTYPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQ 270

Query: 411 QHPWLS 416
             P+++
Sbjct: 271 NFPYMN 276

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 67/284 (23%), Positives = 101/284 (35%), Gaps = 38/284 (13%)

Query: 42  RKLGWGQFSIVWLAY-----DTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDP 94
           + LG G F  V  A       T T   VA+K+ K  A     +A + E+++L  +     
Sbjct: 28  KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHI----- 82

Query: 95  SNEKCVIRLIDH-FKHAGPNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREICKY 151
            +   V+ L+    K  GP    L +++EF   G+    L  Y R K  E    +     
Sbjct: 83  GHHLNVVNLLGACTKPGGP----LMVIVEFCKFGN----LSTYLRSKRNEFVPYKTKGAR 134

Query: 152 ILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTM 211
              G DY+    G I  DLK     + S+   S           L   E           
Sbjct: 135 FRQGKDYV----GAIPVDLKRRLDSITSS--QSSASSGFVEEKSLSDVEEEEAPEDLYKD 188

Query: 212 TIVEKKLKRRAKRAVANISIRRASMGGIELPKPER-CLDGIDMRCKVVDFGNACRANKQF 270
            +  + L   + + VA      AS   I      R  L       K+ DFG A R   + 
Sbjct: 189 FLTLEHLICYSFQ-VAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLA-RDIYKD 246

Query: 271 AEEIQTRQYR------APEVILRAGYSFSVDMWSFACTAFELAT 308
            + ++    R      APE I    Y+   D+WSF    +E+ +
Sbjct: 247 PDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFS 290

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 14/68 (20%)

Query: 116 HLCMVLEFL--GDSLLRLIKYSRYKGLELNKVR----EICKYILTGLDYLHRELGIIHTD 169
            L ++L+++  G+    L   S+ +    ++V+    EI       L++LH +LGII+ D
Sbjct: 133 KLHLILDYINGGELFTHL---SQRERFTEHEVQIYVGEIV----LALEHLH-KLGIIYRD 184

Query: 170 LKPENILL 177
           +K ENILL
Sbjct: 185 IKLENILL 192

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 8/74 (10%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ-----TRQYRAPEVIL--RAGYSFSVD 295
           K E  L   +    + DFG   +       E       T +Y AP+++    +G+  +VD
Sbjct: 186 KLENILLDSNGHVVLTDFG-LSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVD 244

Query: 296 MWSFACTAFELATG 309
            WS     +EL TG
Sbjct: 245 WWSLGVLMYELLTG 258

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 14/138 (10%)

Query: 41  QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCV 100
           + KLG G F  VW+      ++ VA+K  K      +A L E +V+  +        + +
Sbjct: 189 EVKLGQGCFGEVWMGTW-NGTTRVAIKTLKPGTMSPEAFLQEAQVMKKL------RHEKL 241

Query: 101 IRLIDHFKHAGPNGQHLCMVLEFLGD-SLLRLIKYSRYKGLELNKVREICKYILTGLDYL 159
           ++L      A  + + + +V E++   SLL  +K    K L L ++ ++   I +G+ Y+
Sbjct: 242 VQLY-----AVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYV 296

Query: 160 HRELGIIHTDLKPENILL 177
              +  +H DL+  NIL+
Sbjct: 297 E-RMNYVHRDLRAANILV 313

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 14/138 (10%)

Query: 41  QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCV 100
           + KLG G F  VW+      ++ VA+K  K      +A L E +V+  +        + +
Sbjct: 272 EVKLGQGCFGEVWMGTW-NGTTRVAIKTLKPGTMSPEAFLQEAQVMKKL------RHEKL 324

Query: 101 IRLIDHFKHAGPNGQHLCMVLEFLGD-SLLRLIKYSRYKGLELNKVREICKYILTGLDYL 159
           ++L      A  + + + +V E++   SLL  +K    K L L ++ ++   I +G+ Y+
Sbjct: 325 VQLY-----AVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYV 379

Query: 160 HRELGIIHTDLKPENILL 177
              +  +H DL+  NIL+
Sbjct: 380 E-RMNYVHRDLRAANILV 396

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 28/140 (20%), Positives = 57/140 (40%), Gaps = 16/140 (11%)

Query: 41  QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCV 100
           + KLG GQ+  V+     + S  VA+K  K      +  L E  V+  +          +
Sbjct: 225 KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEI------KHPNL 278

Query: 101 IRLIDHFKHAG--PNGQHLCMVLEFLGD-SLLRLIKYSRYKGLELNKVREICKYILTGLD 157
           ++L+      G         ++ EF+   +LL  ++    + +    +  +   I + ++
Sbjct: 279 VQLL------GVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAME 332

Query: 158 YLHRELGIIHTDLKPENILL 177
           YL ++   IH +L   N L+
Sbjct: 333 YLEKK-NFIHRNLAARNCLV 351

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 50.5 bits (121), Expect = 7e-07
 Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 14/138 (10%)

Query: 41  QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCV 100
           ++KLG GQF  VW+A      + VA+K  K  +   +A L E  V+  +          +
Sbjct: 193 EKKLGAGQFGEVWMATY-NKHTKVAVKTMKPGSMSVEAFLAEANVMKTL------QHDKL 245

Query: 101 IRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYL 159
           ++L     HA    + + ++ EF+   SLL  +K        L K+ +    I  G+ ++
Sbjct: 246 VKL-----HAVVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFI 300

Query: 160 HRELGIIHTDLKPENILL 177
             +   IH DL+  NIL+
Sbjct: 301 E-QRNYIHRDLRAANILV 317

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 32/150 (21%), Positives = 63/150 (42%), Gaps = 26/150 (17%)

Query: 41  QRKLGWGQFSIVWLAY----DTRTSSYVALKIQKSAAQFAQAA-LHEIEVLSAVADGDPS 95
            ++LG G F  V +         T   VA+K  + + +        EIE+L ++      
Sbjct: 46  LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSL------ 99

Query: 96  NEKCVIRLIDHFKHAG----PNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREIC 149
               +++        G       ++L +++E+L  G SL   ++  + + ++  K+ +  
Sbjct: 100 QHDNIVKYK------GVCYSAGRRNLKLIMEYLPYG-SLRDYLQKHKER-IDHIKLLQYT 151

Query: 150 KYILTGLDYLHRELGIIHTDLKPENILLVS 179
             I  G++YL      IH DL   NIL+ +
Sbjct: 152 SQICKGMEYLG-TKRYIHRDLATRNILVEN 180

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 32/150 (21%), Positives = 63/150 (42%), Gaps = 26/150 (17%)

Query: 41  QRKLGWGQFSIVWLAY----DTRTSSYVALKIQKSAAQFAQAA-LHEIEVLSAVADGDPS 95
            ++LG G F  V +         T   VA+K  + + +        EIE+L ++      
Sbjct: 15  LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSL------ 68

Query: 96  NEKCVIRLIDHFKHAG----PNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREIC 149
               +++        G       ++L +++E+L  G SL   ++  + + ++  K+ +  
Sbjct: 69  QHDNIVKYK------GVCYSAGRRNLKLIMEYLPYG-SLRDYLQKHKER-IDHIKLLQYT 120

Query: 150 KYILTGLDYLHRELGIIHTDLKPENILLVS 179
             I  G++YL      IH DL   NIL+ +
Sbjct: 121 SQICKGMEYLG-TKRYIHRDLATRNILVEN 149

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 25/150 (16%)

Query: 41  QRKLGWGQFSIVWLAY----DTRTSSYVALKIQKSAAQFAQAA--LHEIEVLSAVADGDP 94
            R LG G F  V L         T   VA+K  K  +     A    EIE+L  +     
Sbjct: 26  IRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNL----- 80

Query: 95  SNEKCVIRLIDHFKHAG----PNGQHLCMVLEFLGD-SLLRLIKYSRYKGLELNKVREIC 149
              + +++        G      G  + +++EFL   SL   +  ++ K + L +  +  
Sbjct: 81  -YHENIVKYK------GICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNK-INLKQQLKYA 132

Query: 150 KYILTGLDYLHRELGIIHTDLKPENILLVS 179
             I  G+DYL      +H DL   N+L+ S
Sbjct: 133 VQICKGMDYLG-SRQYVHRDLAARNVLVES 161

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 26/150 (17%)

Query: 41  QRKLGWGQFSIVWLAY----DTRTSSYVALKIQKSAAQFAQAA-LHEIEVLSAVADGDPS 95
             +LG G F  V L         T + VA+K  + +    Q     EI++L A+      
Sbjct: 28  ISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKAL------ 81

Query: 96  NEKCVIRLIDHFKHAG----PNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVREIC 149
           +   +++        G    P  Q L +V+E+L  G  L   ++  R + L+ +++    
Sbjct: 82  HSDFIVKYR------GVSYGPGRQSLRLVMEYLPSG-CLRDFLQRHRAR-LDASRLLLYS 133

Query: 150 KYILTGLDYLHRELGIIHTDLKPENILLVS 179
             I  G++YL      +H DL   NIL+ S
Sbjct: 134 SQICKGMEYLG-SRRCVHRDLAARNILVES 162

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 19/142 (13%)

Query: 41  QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAA--LHEIEVLSAVADGDPSNEK 98
             ++G G F  V+       ++ VA+K  +        A  L E  +L         +  
Sbjct: 119 GEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQY------SHP 172

Query: 99  CVIRLIDHFKHAG--PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTG 155
            ++RLI      G     Q + +V+E + G   L  ++ +    L +  + ++      G
Sbjct: 173 NIVRLI------GVCTQKQPIYIVMELVQGGDFLTFLR-TEGARLRVKTLLQMVGDAAAG 225

Query: 156 LDYLHRELGIIHTDLKPENILL 177
           ++YL      IH DL   N L+
Sbjct: 226 MEYLE-SKCCIHRDLAARNCLV 246

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 48.0 bits (114), Expect = 5e-06
 Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 18/146 (12%)

Query: 39  IAQRKLGWGQFSIVWLA-YDTRTSSY-VALKIQKSAAQFAQAA--LHEIEVLSAVADGDP 94
           IA  +LG G F  V    Y  R     VA+K+ K   + A     + E +++  +     
Sbjct: 339 IADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQL----- 393

Query: 95  SNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYIL 153
            +   ++RLI          + L +V+E   G  L + +   R + + ++ V E+   + 
Sbjct: 394 -DNPYIVRLI-----GVCQAEALMLVMEMAGGGPLHKFLVGKREE-IPVSNVAELLHQVS 446

Query: 154 TGLDYLHRELGIIHTDLKPENILLVS 179
            G+ YL  E   +H +L   N+LLV+
Sbjct: 447 MGMKYL-EEKNFVHRNLAARNVLLVN 471

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 31/147 (21%), Positives = 53/147 (36%), Gaps = 32/147 (21%)

Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVI 101
            KLG GQ+  V+     + S  VA+K  K      +  L E  V+               
Sbjct: 19  HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKE------------- 65

Query: 102 RLIDHFKHAGPN----------GQHLCMVLEFLGD-SLLRLIKYSRYKGLELNKVREICK 150
                 KH  PN               ++ EF+   +LL  ++    + +    +  +  
Sbjct: 66  -----IKH--PNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMAT 118

Query: 151 YILTGLDYLHRELGIIHTDLKPENILL 177
            I + ++YL ++   IH DL   N L+
Sbjct: 119 QISSAMEYLEKK-NFIHRDLAARNCLV 144

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 14/138 (10%)

Query: 41  QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCV 100
             +LG GQF  VW+ Y     + VA+K  K  +    A L E  ++  +        + +
Sbjct: 18  VERLGAGQFGEVWMGY-YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQL------QHQRL 70

Query: 101 IRLIDHFKHAGPNGQHLCMVLEFLGD-SLLRLIKYSRYKGLELNKVREICKYILTGLDYL 159
           +RL      A    + + ++ E++ + SL+  +K      L +NK+ ++   I  G+ ++
Sbjct: 71  VRLY-----AVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFI 125

Query: 160 HRELGIIHTDLKPENILL 177
                 IH DL+  NIL+
Sbjct: 126 EER-NYIHRDLRAANILV 142

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 30/150 (20%)

Query: 42  RKLGWGQFSIVWLAY----DTRTSSYVALKIQKSAAQFAQAA--LHEIEVLSAVADGDPS 95
           + LG G F  V+         +    VA+K  + A         L E  V+++V      
Sbjct: 21  KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV------ 74

Query: 96  NEKCVIRLIDHFKHAGPNG----QHLCMVLEF--LGDSLLRLIKYSRYKGLELNKVREIC 149
           +   V RL+         G      + ++ +    G  LL  ++  +   +    +   C
Sbjct: 75  DNPHVCRLL---------GICLTSTVQLITQLMPFG-CLLDYVREHKDN-IGSQYLLNWC 123

Query: 150 KYILTGLDYLHRELGIIHTDLKPENILLVS 179
             I  G++YL  +  ++H DL   N+L+ +
Sbjct: 124 VQIAKGMNYLE-DRRLVHRDLAARNVLVKT 152

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 43.7 bits (104), Expect = 5e-05
 Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 24/143 (16%)

Query: 41  QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCV 100
            ++LG GQF +V L    +    VA+K+ K  +        E + +  +      +   +
Sbjct: 13  LKELGSGQFGVVKLGK-WKGQYDVAVKMIKEGSMSEDEFFQEAQTMMKL------SHPKL 65

Query: 101 IRLIDHFKHAG--PNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVR--EICKYILT 154
           ++        G       + +V E++  G     L+ Y R  G  L   +  E+C  +  
Sbjct: 66  VKFY------GVCSKEYPIYIVTEYISNGC----LLNYLRSHGKGLEPSQLLEMCYDVCE 115

Query: 155 GLDYLHRELGIIHTDLKPENILL 177
           G+ +L      IH DL   N L+
Sbjct: 116 GMAFLE-SHQFIHRDLAARNCLV 137

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 22/148 (14%)

Query: 39  IAQRKLGWGQFSIVWLAY--DTRTSSYVALKIQKSAAQFAQAA---LHEIEVLSAVADGD 93
           +  ++LG G F  V   Y    +    VA+KI K+ A         L E  V+  +    
Sbjct: 20  LEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQL---- 75

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEF--LGDSLLRLIKYSRYKGLELNKVREICKY 151
             +   ++R+I          +   +V+E   LG  L + ++ +R+  ++   + E+   
Sbjct: 76  --DNPYIVRMI-----GICEAESWMLVMEMAELG-PLNKYLQQNRH--VKDKNIIELVHQ 125

Query: 152 ILTGLDYLHRELGIIHTDLKPENILLVS 179
           +  G+ YL  E   +H DL   N+LLV+
Sbjct: 126 VSMGMKYL-EESNFVHRDLAARNVLLVT 152

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 24/142 (16%)

Query: 41  QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCV 100
            +++G GQF +V L Y       VA+K  +  A   +  + E EV+  +      +   +
Sbjct: 13  VQEIGSGQFGLVHLGY-WLNKDKVAIKTIREGAMSEEDFIEEAEVMMKL------SHPKL 65

Query: 101 IRLIDHFKHAG--PNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVR--EICKYILT 154
           ++L       G       +C+V EF+  G     L  Y R +           +C  +  
Sbjct: 66  VQLY------GVCLEQAPICLVTEFMEHGC----LSDYLRTQRGLFAAETLLGMCLDVCE 115

Query: 155 GLDYLHRELGIIHTDLKPENIL 176
           G+ YL  E  +IH DL   N L
Sbjct: 116 GMAYL-EEACVIHRDLAARNCL 136

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 24/149 (16%)

Query: 39  IAQRKLGWGQFSIVWLAY--DTRTSSYVALKIQKSAAQFAQAA--LHEIEVLSAVADGDP 94
           IA  +LG G F  V        +    VA+K+ K   + A     + E +++  +     
Sbjct: 13  IADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQL----- 67

Query: 95  SNEKCVIRLIDHFKHAGPNGQHLCMVLEF--LGDSLLRLIKYSRYKGLELNKVR--EICK 150
            +   ++RLI          + L +V+E    G     L K+   K  E+      E+  
Sbjct: 68  -DNPYIVRLI-----GVCQAEALMLVMEMAGGGP----LHKFLVGKREEIPVSNVAELLH 117

Query: 151 YILTGLDYLHRELGIIHTDLKPENILLVS 179
            +  G+ YL  E   +H DL   N+LLV+
Sbjct: 118 QVSMGMKYL-EEKNFVHRDLAARNVLLVN 145

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 31/158 (19%), Positives = 56/158 (35%), Gaps = 31/158 (19%)

Query: 42  RKLGWGQFSIVWLAYDTRTSSY-------VALKIQKSAAQFAQAA-LHEIEVLSAVADGD 93
             LG G F+ ++         Y       V LK+   A +    +      ++S +    
Sbjct: 14  ESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKL---- 69

Query: 94  PSNEKCVIRLIDHFKHAG--PNGQHLCMVLEF--LGDSLLRLIKYSRYKGLELNKVR--E 147
             + K ++         G    G    +V EF   G     L  Y +     +N +   E
Sbjct: 70  --SHKHLVLNY------GVCVCGDENILVQEFVKFGS----LDTYLKKNKNCINILWKLE 117

Query: 148 ICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK 185
           + K +   + +L  E  +IH ++  +NILL+   D   
Sbjct: 118 VAKQLAAAMHFL-EENTLIHGNVCAKNILLIREEDRKT 154

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 40/150 (26%)

Query: 41  QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCV 100
            ++LG GQF +V      R    VA+K+ K  +      + E +V+              
Sbjct: 29  LKELGTGQFGVVKYGK-WRGQYDVAIKMIKEGSMSEDEFIEEAKVMMN------------ 75

Query: 101 IRLIDHFKHAGPN----------GQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVR-- 146
                   H               + + ++ E++  G     L+ Y R         +  
Sbjct: 76  ------LSH--EKLVQLYGVCTKQRPIFIITEYMANGC----LLNYLREMRHRFQTQQLL 123

Query: 147 EICKYILTGLDYLHRELGIIHTDLKPENIL 176
           E+CK +   ++YL      +H DL   N L
Sbjct: 124 EMCKDVCEAMEYL-ESKQFLHRDLAARNCL 152

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 22/147 (14%)

Query: 41  QRKLGWGQFSIVWLAY---DTRTSSYVALKIQKSAAQFAQAA--LHEIEVLSAVADGDPS 95
           ++ +G G    V         +    VA+K  K+     Q    L E  ++         
Sbjct: 54  EKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQF------ 107

Query: 96  NEKCVIRLIDHFKHAG--PNGQHLCMVLEFLGD-SLLRLIKYSRYKGLELNKVREICKYI 152
           +   +IRL       G    G+   +V E++ + SL   ++    +   + ++  + + +
Sbjct: 108 DHPNIIRLE------GVVTRGRLAMIVTEYMENGSLDTFLRTHDGQ-FTIMQLVGMLRGV 160

Query: 153 LTGLDYLHRELGIIHTDLKPENILLVS 179
             G+ YL  +LG +H DL   N+L+ S
Sbjct: 161 GAGMRYLS-DLGYVHRDLAARNVLVDS 186

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 34/148 (22%), Positives = 56/148 (37%), Gaps = 23/148 (15%)

Query: 41  QRKLGWGQFSIVWLAY---DTRTSSYVALKIQK----SAAQFAQAALHEIEVLSAVADGD 93
             KLG G F +V        +  +  VA+K  K    S  +     + E+  + ++    
Sbjct: 23  LEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSL---- 78

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEF--LGDSLLRLIKYSRYKGLELNKVREICKY 151
             + + +IRL             + MV E   LG SLL  ++  +     L  +      
Sbjct: 79  --DHRNLIRLY-----GVVLTPPMKMVTELAPLG-SLLDRLRKHQGH-FLLGTLSRYAVQ 129

Query: 152 ILTGLDYLHRELGIIHTDLKPENILLVS 179
           +  G+ YL      IH DL   N+LL +
Sbjct: 130 VAEGMGYLE-SKRFIHRDLAARNLLLAT 156

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 31/147 (21%), Positives = 60/147 (40%), Gaps = 22/147 (14%)

Query: 41  QRKLGWGQFSIVWLAY---DTRTSSYVALKIQKSAAQFAQAA--LHEIEVLSAVADGDPS 95
            + +G G+F  V        ++    VA+K  K      Q    L E  ++         
Sbjct: 50  DKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQF------ 103

Query: 96  NEKCVIRLIDHFKHAG--PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYI 152
           +   +IRL       G     + + +V E++   SL   ++    +   + ++  + + I
Sbjct: 104 DHPNIIRLE------GVVTKSKPVMIVTEYMENGSLDSFLRKHDAQ-FTVIQLVGMLRGI 156

Query: 153 LTGLDYLHRELGIIHTDLKPENILLVS 179
            +G+ YL  ++G +H DL   NIL+ S
Sbjct: 157 ASGMKYLS-DMGYVHRDLAARNILINS 182

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 38/162 (23%), Positives = 62/162 (38%), Gaps = 38/162 (23%)

Query: 42  RKLGWGQFSIVWLAY-----DTRTSSYVALKIQKSAAQFAQAA--LHEIEVLSAVADGDP 94
           + LG G F  V  A       +  +  VA+K+ K +A   +    + E++VLS +  G+ 
Sbjct: 29  KTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYL--GNH 86

Query: 95  SNEKCVIRLIDHFKHAG--PNGQHLCMVLEFL--GD--SLLRLIKYSRYKGLELNKVREI 148
            N   ++ L+      G    G    ++ E+   GD  + LR  + S         + E 
Sbjct: 87  MN---IVNLL------GACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMED 137

Query: 149 CKYILT-------------GLDYLHRELGIIHTDLKPENILL 177
            +  L              G+ +L      IH DL   NILL
Sbjct: 138 DELALDLEDLLSFSYQVAKGMAFLA-SKNCIHRDLAARNILL 178

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 22/146 (15%)

Query: 42  RKLGWGQFSIV----WLAYDTRTSSYVALKIQKSAAQFAQAA--LHEIEVLSAVADGDPS 95
           + LG G F  V    W+    +    VA+K  + A         L E  V+++V      
Sbjct: 21  KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV------ 74

Query: 96  NEKCVIRLIDHFKHAGPNGQHLCMVLEF--LGDSLLRLIKYSRYKGLELNKVREICKYIL 153
           +   V RL+            + ++ +    G  LL  ++  +   +    +   C  I 
Sbjct: 75  DNPHVCRLL-----GICLTSTVQLITQLMPFG-CLLDYVREHKDN-IGSQYLLNWCVQIA 127

Query: 154 TGLDYLHRELGIIHTDLKPENILLVS 179
            G++YL  +  ++H DL   N+L+ +
Sbjct: 128 KGMNYLE-DRRLVHRDLAARNVLVKT 152

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 34/151 (22%), Positives = 61/151 (40%), Gaps = 29/151 (19%)

Query: 41  QRKLGWGQFSIVWLAY----DTRTSSYVALKIQKSAAQFAQAA--LHEIEVLSAVADGDP 94
           Q+ +G G+F  V+         +    VA+K  K+     Q    L E  ++        
Sbjct: 49  QKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQF----- 103

Query: 95  SNEKCVIRLIDHFKHAG--PNGQHLCMVLEFL--GDSLLRLIKYSRYKGLELNKVR--EI 148
            +   +IRL       G     + + ++ E++  G     L K+ R K  E + ++   +
Sbjct: 104 -SHHNIIRLE------GVISKYKPMMIITEYMENGA----LDKFLREKDGEFSVLQLVGM 152

Query: 149 CKYILTGLDYLHRELGIIHTDLKPENILLVS 179
            + I  G+ YL   +  +H DL   NIL+ S
Sbjct: 153 LRGIAAGMKYLA-NMNYVHRDLAARNILVNS 182

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 22/147 (14%)

Query: 41  QRKLGWGQFSIVWLAY----DTRTSSYVALKIQKSAAQFAQAA--LHEIEVLSAVADGDP 94
            + LG G F  V               V +K+ +  +           +  + ++     
Sbjct: 18  LKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSL----- 72

Query: 95  SNEKCVIRLIDHFKHAGPNGQHLCMVLEF--LGDSLLRLIKYSRYKGLELNKVREICKYI 152
            +   ++RL+         G  L +V ++  LG SLL  ++  R   L    +      I
Sbjct: 73  -DHAHIVRLL-----GLCPGSSLQLVTQYLPLG-SLLDHVRQHRGA-LGPQLLLNWGVQI 124

Query: 153 LTGLDYLHRELGIIHTDLKPENILLVS 179
             G+ YL  E G++H +L   N+LL S
Sbjct: 125 AKGMYYLE-EHGMVHRNLAARNVLLKS 150

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	447
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
3uqc_A	286	Probable conserved transmembrane protein; structur	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.95
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.89
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.85
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.77
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.58
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.09
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	98.83
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.69
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.67
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.22
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.14
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.12
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	97.61
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	97.55
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.45
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	97.34
3ats_A	357	Putative uncharacterized protein; hypothetical pro	97.22
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	96.64
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	96.1
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	95.73
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	95.42
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	95.21
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	95.17
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	95.13
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	95.05
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	94.49
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	94.05
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	94.02
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	93.97
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	92.01
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	91.86
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	83.77

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=6.2e-56  Score=428.16  Aligned_cols=254  Identities=28%  Similarity=0.435  Sum_probs=199.3

Q ss_pred             cCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeec
Q 013220           29 VGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLI  104 (447)
Q Consensus        29 ~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~  104 (447)
                      .|..+  ++|++.++||+|+||+||+|++..+++.||||++....    .....+.+|+++++.+      +|||||+++
T Consensus         8 ~G~~i--g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l------~HpnIv~~~   79 (275)
T 3hyh_A            8 DGAHI--GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLL------RHPHIIKLY   79 (275)
T ss_dssp             --------CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHC------CCTTBCCEE
T ss_pred             CCCEe--eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHC------CCCCCCeEE
Confidence            35555  58999999999999999999999999999999886432    3345788999999999      899999999


Q ss_pred             ccccccCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCC
Q 013220          105 DHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       105 ~~~~~~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~  184 (447)
                      ++|...    ..+|+|||||+++|.+.+...  ..+++..++.++.||+.||+|||++ ||+||||||+|||+       
T Consensus        80 ~~~~~~----~~~~ivmEy~~g~L~~~l~~~--~~l~e~~~~~~~~qi~~al~ylH~~-~IiHRDiKP~NILl-------  145 (275)
T 3hyh_A           80 DVIKSK----DEIIMVIEYAGNELFDYIVQR--DKMSEQEARRFFQQIISAVEYCHRH-KIVHRDLKPENLLL-------  145 (275)
T ss_dssp             EEEECS----SEEEEEEECCCEEHHHHHHHS--CSCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCTTTEEE-------
T ss_pred             EEEEEC----CEEEEEEeCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CcccccCChHHeEE-------
Confidence            999854    789999999988999988754  4599999999999999999999997 99999999999999       


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                       +.++.+||+|||+|.
T Consensus       146 -----------------------------------------------------------------~~~~~vkl~DFGla~  160 (275)
T 3hyh_A          146 -----------------------------------------------------------------DEHLNVKIADFGLSN  160 (275)
T ss_dssp             -----------------------------------------------------------------CTTCCEEECCSSCC-
T ss_pred             -----------------------------------------------------------------CCCCCEEEeecCCCe
Confidence                                                                             446789999999997


Q ss_pred             cccc--ccccCCCCCCccChHHhhcCCC-CccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          265 RANK--QFAEEIQTRQYRAPEVILRAGY-SFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       265 ~~~~--~~~~~~gt~~y~aPE~l~~~~~-~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                      ....  .....+||+.|+|||++.+..| +.++|||||||++|+|++|+.||.+.+      ......            
T Consensus       161 ~~~~~~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~------~~~~~~------------  222 (275)
T 3hyh_A          161 IMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDES------IPVLFK------------  222 (275)
T ss_dssp             --------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHH------------
T ss_pred             ecCCCCccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCC------HHHHHH------------
Confidence            5543  2345689999999999998876 589999999999999999999997542      111111            


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccc
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~  417 (447)
                                                    .+....+.+++.+++++.+||.+||+.||++|||++|+|+||||+.
T Consensus       223 ------------------------------~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~s~~eil~hpw~k~  268 (275)
T 3hyh_A          223 ------------------------------NISNGVYTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQDDWFKV  268 (275)
T ss_dssp             ------------------------------HHHHTCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHCHHHHT
T ss_pred             ------------------------------HHHcCCCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHcCccccc
Confidence                                          1122233355566789999999999999999999999999999974

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=1.1e-55  Score=432.64  Aligned_cols=251  Identities=27%  Similarity=0.417  Sum_probs=215.1

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|++.+.||+|+||+||+|++..+++.||||++....    ...+.+.+|+++|+.+      +|||||+++++|.+. 
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l------~HpnIv~l~~~~~~~-  104 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL------DHPFFVKLYFTFQDD-  104 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTC------CCTTBCCEEEEEECS-
T ss_pred             cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhC------CCCCCCeEEEEEEeC-
Confidence            57999999999999999999999999999999987543    2346788999999999      899999999999854 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                         ..+||||||| ||+|.+++...  ..+++..++.++.||+.||+|||++ ||+||||||+|||+             
T Consensus       105 ---~~~yivmEy~~gG~L~~~i~~~--~~l~e~~~~~~~~qi~~al~ylH~~-~IiHRDlKPeNILl-------------  165 (311)
T 4aw0_A          105 ---EKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFYTAEIVSALEYLHGK-GIIHRDLKPENILL-------------  165 (311)
T ss_dssp             ---SEEEEEECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEE-------------
T ss_pred             ---CEEEEEEecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CCccCCCCHHHeEE-------------
Confidence               7899999999 89999998754  4599999999999999999999997 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc--
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--  268 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~--  268 (447)
                                                                                 +.++.+||+|||+|+....  
T Consensus       166 -----------------------------------------------------------~~~g~vKl~DFGla~~~~~~~  186 (311)
T 4aw0_A          166 -----------------------------------------------------------NEDMHIQITDFGTAKVLSPES  186 (311)
T ss_dssp             -----------------------------------------------------------CTTSCEEECCCTTCEECCTTT
T ss_pred             -----------------------------------------------------------cCCCCEEEEEcCCceecCCCC
Confidence                                                                       4467899999999976532  


Q ss_pred             ---ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          269 ---QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       269 ---~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                         .....+||+.|+|||++.+..|+.++|||||||++|+|++|..||.+.+      .....                 
T Consensus       187 ~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~------~~~~~-----------------  243 (311)
T 4aw0_A          187 KQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGN------EGLIF-----------------  243 (311)
T ss_dssp             TCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHH-----------------
T ss_pred             CcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC------HHHHH-----------------
Confidence               2335689999999999999999999999999999999999999997652      22222                 


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHH------HhcCccccccc
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQ------CLQHPWLSLRN  419 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~e------lL~hp~f~~~~  419 (447)
                                               ..+....+.++..+++++.+||.+||+.||++|||++|      +++||||+..+
T Consensus       244 -------------------------~~i~~~~~~~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~~~~~i~~Hp~F~~id  298 (311)
T 4aw0_A          244 -------------------------AKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVT  298 (311)
T ss_dssp             -------------------------HHHHHTCCCCCTTCCHHHHHHHHHHSCSSGGGSTTSGGGTCHHHHHTSGGGTTCC
T ss_pred             -------------------------HHHHcCCCCCCcccCHHHHHHHHHHccCCHhHCcChHHHcCCHHHHCCCCcCCCC
Confidence                                     22223334466667889999999999999999999998      58999999764

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=5.5e-55  Score=433.75  Aligned_cols=253  Identities=26%  Similarity=0.433  Sum_probs=212.4

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      ..|++.++||+|+||+||+|++..+++.||||++.... ...+.+.+|+++|+.+      +|||||+++++|...    
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l------~HpnIV~l~~~~~~~----  143 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDY------QHENVVEMYNSYLVG----  143 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHC------CCTTBCCEEEEEEET----
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhC------CCCCCCcEEEEEEEC----
Confidence            56999999999999999999999999999999886543 3345688999999999      899999999999864    


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ..+||||||| |++|.+++..   ..+++..++.++.||+.||+|||++ |||||||||+|||+                
T Consensus       144 ~~~~ivmEy~~gg~L~~~l~~---~~l~e~~~~~~~~qi~~aL~ylH~~-~IiHRDlKp~NILl----------------  203 (346)
T 4fih_A          144 DELWVVMEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLHAQ-GVIHRDIKSDSILL----------------  203 (346)
T ss_dssp             TEEEEEECCCTTEEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEE----------------
T ss_pred             CEEEEEEeCCCCCcHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC-CcccccCCHHHEEE----------------
Confidence            6899999999 8899998864   3499999999999999999999997 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---c
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---F  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~  270 (447)
                                                                              +.++.+||+|||+|......   .
T Consensus       204 --------------------------------------------------------~~~g~vKl~DFGla~~~~~~~~~~  227 (346)
T 4fih_A          204 --------------------------------------------------------THDGRVKLSDFGFCAQVSKEVPRR  227 (346)
T ss_dssp             --------------------------------------------------------CTTCCEEECCCTTCEECCSSSCCB
T ss_pred             --------------------------------------------------------CCCCCEEEecCcCceecCCCCCcc
Confidence                                                                    44678999999999765432   3


Q ss_pred             ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          271 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      ...+||+.|+|||++.+..|+.++|||||||++|+|++|..||.+.+      ....+..+..   ..+.          
T Consensus       228 ~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~------~~~~~~~i~~---~~~~----------  288 (346)
T 4fih_A          228 KSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP------PLKAMKMIRD---NLPP----------  288 (346)
T ss_dssp             CCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC------HHHHHHHHHH---SSCC----------
T ss_pred             cccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC------HHHHHHHHHc---CCCC----------
Confidence            45689999999999999999999999999999999999999997652      2222222221   1110          


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                ....+..+++++.+||.+||+.||++|||++|+|+||||+...
T Consensus       289 --------------------------~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~Hp~~~~~~  331 (346)
T 4fih_A          289 --------------------------RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAG  331 (346)
T ss_dssp             --------------------------CCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGCC
T ss_pred             --------------------------CCCccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCHhhcCCC
Confidence                                      0112234577899999999999999999999999999998654

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=4.9e-55  Score=434.76  Aligned_cols=254  Identities=22%  Similarity=0.377  Sum_probs=208.9

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.++||+|+||+||+|++..+++.||||++...   ....+.+.+|+++++.+      +|||||+++++|.+.  
T Consensus        24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l------~HpnIV~~~~~~~~~--   95 (350)
T 4b9d_A           24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANM------KHPNIVQYRESFEEN--   95 (350)
T ss_dssp             CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHC------CCTTBCCEEEEEEET--
T ss_pred             cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHC------CCCCCCcEEEEEEEC--
Confidence            6899999999999999999999999999999988643   33456789999999999      899999999999854  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                        ..+||||||| |++|.+++.......+++..++.++.||+.||+|||++ ||+||||||+|||+              
T Consensus        96 --~~~yiVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~-~IiHRDlKp~NILl--------------  158 (350)
T 4b9d_A           96 --GSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDR-KILHRDIKSQNIFL--------------  158 (350)
T ss_dssp             --TEEEEEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT-TCEETTCCGGGEEE--------------
T ss_pred             --CEEEEEEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeeccCCHHHEEE--------------
Confidence              6899999999 89999999765555689999999999999999999997 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                +.++.+||+|||+|+.....  
T Consensus       159 ----------------------------------------------------------~~~g~vKl~DFGla~~~~~~~~  180 (350)
T 4b9d_A          159 ----------------------------------------------------------TKDGTVQLGDFGIARVLNSTVE  180 (350)
T ss_dssp             ----------------------------------------------------------CTTCCEEECSTTEESCCCHHHH
T ss_pred             ----------------------------------------------------------CCCCCEEEcccccceeecCCcc
Confidence                                                                      44678999999999865432  


Q ss_pred             -cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          270 -FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       270 -~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                       ....+||+.|+|||++.+..|+.++|||||||++|+|++|+.||.+.+      ....+..+..  +..+         
T Consensus       181 ~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~------~~~~~~~i~~--~~~~---------  243 (350)
T 4b9d_A          181 LARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGS------MKNLVLKIIS--GSFP---------  243 (350)
T ss_dssp             HHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHH--TCCC---------
T ss_pred             cccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC------HHHHHHHHHc--CCCC---------
Confidence             234589999999999999999999999999999999999999997652      2222222211  1111         


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                    ..+..+++++.+||.+||+.||++|||++|+|+||||+...
T Consensus       244 ------------------------------~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~hp~~~~~~  284 (350)
T 4b9d_A          244 ------------------------------PVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEKGFIAKRI  284 (350)
T ss_dssp             ------------------------------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSHHHHTTG
T ss_pred             ------------------------------CCCccCCHHHHHHHHHHccCChhHCcCHHHHhcCHHhhcCC
Confidence                                          13345577899999999999999999999999999998643

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=1.1e-53  Score=431.51  Aligned_cols=384  Identities=47%  Similarity=0.863  Sum_probs=292.1

Q ss_pred             CCCCCCCccccCCCCCCCccccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHH
Q 013220            6 SSGSEDDDEGIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEV   85 (447)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~   85 (447)
                      +..+++++|.+..|..++|+++.+|++++ ++|++.++||+|+||+||+|++..+++.||+|+++......+.+.+|+++
T Consensus         8 ~~~~~~~~e~~~~~~~~~~~~~~~g~~~~-~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~   86 (397)
T 1wak_A            8 LGSDDDEQEDPNDYCKGGYHLVKIGDLFN-GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRL   86 (397)
T ss_dssp             --------------CC--CCSSCTTCEET-TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHH
T ss_pred             ccCCcccccccccCCCCCceEEehhhhcC-CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCCcchHHHHHHHHH
Confidence            34557888999999999999999999997 79999999999999999999999999999999998777777889999999


Q ss_pred             HHHhhcCC--CCCcceeeeecccccccCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhC
Q 013220           86 LSAVADGD--PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHREL  163 (447)
Q Consensus        86 l~~l~~~~--~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~  163 (447)
                      ++.+.+..  ..+|+||+++++.|...+.++.+.++||||+++++.+.+.......+++..++.++.||+.||+|||++.
T Consensus        87 l~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~  166 (397)
T 1wak_A           87 LKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKC  166 (397)
T ss_dssp             HHHHHHSCTTCGGGGGBCCEEEEEEEEETTEEEEEEEECCCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhhcCCCCCCcceeeeeecceeecCCCCceEEEEEeccCccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence            99998653  3358999999999986655667999999999888888776655566999999999999999999999933


Q ss_pred             CcccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHH----HHHHHhhhhhhhhhhhcccCCC
Q 013220          164 GIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKK----LKRRAKRAVANISIRRASMGGI  239 (447)
Q Consensus       164 gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  239 (447)
                      ||+||||||+|||+......                          ........    .........+..+......+..
T Consensus       167 givHrDikp~NIll~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (397)
T 1wak_A          167 RIIHTDIKPENILLSVNEQY--------------------------IRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNF  220 (397)
T ss_dssp             CEECCCCSGGGEEECCCHHH--------------------------HHHHHHHHC---------------------CCTT
T ss_pred             CEecCCCCHHHeeEeccchh--------------------------hhhhhhhhHHHhhcCCCCCCCCccccCCcccccc
Confidence            99999999999999542100                          00000000    0000000000000000111111


Q ss_pred             CCCCCCccCCCcccceeEeecCcccccccccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCC
Q 013220          240 ELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQ  319 (447)
Q Consensus       240 ~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~  319 (447)
                       ..............++|+|||.+..........+||+.|+|||++.+..++.++|||||||++|+|++|..||...+..
T Consensus       221 -~~~~~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~  299 (397)
T 1wak_A          221 -LVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGE  299 (397)
T ss_dssp             -SCCTTSGGGGGGCCEEECCGGGCEETTBCSCSCCSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCS
T ss_pred             -cccccccccccccceEeccccccccccccCccCCCCCcccCChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCccc
Confidence             1111111223446899999999987776667778999999999999999999999999999999999999999988766


Q ss_pred             CCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccC
Q 013220          320 GFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFT  399 (447)
Q Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~d  399 (447)
                      ........+..+.++.|..|..+.........+|...+..........+.....+.....++...+..+.+||.+||+.|
T Consensus       300 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d  379 (397)
T 1wak_A          300 EYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELI  379 (397)
T ss_dssp             SSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSS
T ss_pred             ccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccCCcchhHhhhhhcccchhhHHHHHHHHHHHhccC
Confidence            66667888999999999999998888888888888888887777777777778888888889999999999999999999


Q ss_pred             CCCCCChHHHhcCccccc
Q 013220          400 PEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       400 P~kRpta~elL~hp~f~~  417 (447)
                      |++|||++|+|+||||++
T Consensus       380 P~~Rpt~~e~l~hp~~~~  397 (397)
T 1wak_A          380 PEKRATAAECLRHPWLNS  397 (397)
T ss_dssp             GGGSCCHHHHHTSGGGGC
T ss_pred             hhhcCCHHHHhhCccccC
Confidence            999999999999999973

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=2.1e-54  Score=420.78  Aligned_cols=260  Identities=25%  Similarity=0.387  Sum_probs=210.5

Q ss_pred             cCccccCCce-EEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeec
Q 013220           29 VGDLFNGGRY-IAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLI  104 (447)
Q Consensus        29 ~g~~~~~~~y-~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~  104 (447)
                      +|.... ++| ++.++||+|+||+||+|++..++..||+|++...   ....+.+.+|+++++.+      +|||||+++
T Consensus        19 ~~~~~~-gr~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l------~HpnIV~~~   91 (290)
T 3fpq_A           19 VGMSND-GRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGL------QHPNIVRFY   91 (290)
T ss_dssp             EEECTT-SSEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTC------CCTTBCCEE
T ss_pred             cCcCCC-CceEEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhC------CCCCCCcEE
Confidence            444444 555 8899999999999999999999999999987643   23456789999999999      899999999


Q ss_pred             ccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCC--cccccCCCCCeEeeecC
Q 013220          105 DHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELG--IIHTDLKPENILLVSTI  181 (447)
Q Consensus       105 ~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~g--IiH~Dikp~Nill~~~~  181 (447)
                      ++|.........+||||||| |++|.+++...  ..+++..++.++.||+.||+|||++ |  |+||||||+|||++.  
T Consensus        92 ~~~~~~~~~~~~~~lvmEy~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~ylH~~-~~~IiHRDlKp~NILl~~--  166 (290)
T 3fpq_A           92 DSWESTVKGKKCIVLVTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITG--  166 (290)
T ss_dssp             EEEEEEETTEEEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCCCCCGGGEEESS--
T ss_pred             EEEeeccCCCcEEEEEEeCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEecccChhheeEEC--
Confidence            99976544557899999999 89999998754  4599999999999999999999996 8  999999999999932  


Q ss_pred             CCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecC
Q 013220          182 DPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFG  261 (447)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg  261 (447)
                                                                                           .++.+||+|||
T Consensus       167 ---------------------------------------------------------------------~~g~vKl~DFG  177 (290)
T 3fpq_A          167 ---------------------------------------------------------------------PTGSVKIGDLG  177 (290)
T ss_dssp             ---------------------------------------------------------------------TTSCEEECCTT
T ss_pred             ---------------------------------------------------------------------CCCCEEEEeCc
Confidence                                                                                 24679999999


Q ss_pred             cccccccc-cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCC--C
Q 013220          262 NACRANKQ-FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK--M  338 (447)
Q Consensus       262 ~a~~~~~~-~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~--~  338 (447)
                      +|+..... ....+||+.|+|||++.+ .|+.++|||||||++|+|++|+.||.+.+      ....   +.+.+..  .
T Consensus       178 la~~~~~~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~------~~~~---~~~~i~~~~~  247 (290)
T 3fpq_A          178 LATLKRASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQ------NAAQ---IYRRVTSGVK  247 (290)
T ss_dssp             GGGGCCTTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCS------SHHH---HHHHHTTTCC
T ss_pred             CCEeCCCCccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCC------cHHH---HHHHHHcCCC
Confidence            99754433 345689999999999865 69999999999999999999999997542      1111   1211111  1


Q ss_pred             CHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccc
Q 013220          339 PRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~  417 (447)
                      |.                                      .++...++++.+||.+||+.||++|||++|+|+||||++
T Consensus       248 ~~--------------------------------------~~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~Hp~~~~  288 (290)
T 3fpq_A          248 PA--------------------------------------SFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQE  288 (290)
T ss_dssp             CG--------------------------------------GGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGC-
T ss_pred             CC--------------------------------------CCCccCCHHHHHHHHHHccCChhHCcCHHHHhcCccccC
Confidence            11                                      012233567899999999999999999999999999985

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=8.4e-54  Score=435.43  Aligned_cols=253  Identities=26%  Similarity=0.433  Sum_probs=212.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      +.|++.++||+|+||+||+|++..+++.||||++.... ...+.+.+|+++|+.+      +|+|||+++++|...    
T Consensus       151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l------~HpnIV~l~~~~~~~----  220 (423)
T 4fie_A          151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDY------QHENVVEMYNSYLVG----  220 (423)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHC------CCTTBCCEEEEEEET----
T ss_pred             HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhC------CCCCCCceEEEEEEC----
Confidence            57999999999999999999999999999999886443 3345788999999999      899999999999864    


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      +.+||||||| ||+|.+++..   ..+++..++.++.||+.||+|||++ |||||||||+|||+                
T Consensus       221 ~~~~iVmEy~~gG~L~~~i~~---~~l~e~~~~~~~~qil~aL~ylH~~-~IiHRDiKp~NILl----------------  280 (423)
T 4fie_A          221 DELWVVMEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLHAQ-GVIHRDIKSDSILL----------------  280 (423)
T ss_dssp             TEEEEEEECCTTEEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSTTTEEE----------------
T ss_pred             CEEEEEEeCCCCCcHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHHHC-CeecccCCHHHEEE----------------
Confidence            6899999999 8999998864   3499999999999999999999997 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---c
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---F  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~  270 (447)
                                                                              +.++.+||+|||+|......   .
T Consensus       281 --------------------------------------------------------~~~g~vKl~DFGla~~~~~~~~~~  304 (423)
T 4fie_A          281 --------------------------------------------------------THDGRVKLSDFGFCAQVSKEVPRR  304 (423)
T ss_dssp             --------------------------------------------------------CTTCCEEECCCTTCEECCSSCCCB
T ss_pred             --------------------------------------------------------cCCCCEEEecCccceECCCCCccc
Confidence                                                                    44678999999999765432   3


Q ss_pred             ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          271 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      ...+||+.|+|||++.+..|+.++|||||||++|+|++|..||.+.+      ....+..+..   ..+.          
T Consensus       305 ~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~------~~~~~~~i~~---~~~~----------  365 (423)
T 4fie_A          305 KSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP------PLKAMKMIRD---NLPP----------  365 (423)
T ss_dssp             CCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC------HHHHHHHHHH---SCCC----------
T ss_pred             cccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC------HHHHHHHHHc---CCCC----------
Confidence            45689999999999999999999999999999999999999997652      2222222211   1110          


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                .......+++++.+||.+||+.||++|||++|+|+||||+...
T Consensus       366 --------------------------~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~Hp~~~~~~  408 (423)
T 4fie_A          366 --------------------------RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAG  408 (423)
T ss_dssp             --------------------------CCSCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGCC
T ss_pred             --------------------------CCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCHHhcCCC
Confidence                                      0112234577899999999999999999999999999998643

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=9.9e-53  Score=426.84  Aligned_cols=288  Identities=27%  Similarity=0.424  Sum_probs=228.6

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      +++|++.++||+|+||+||+|++..+++.||||+++...   ...+.+.+|+++|+.+      +|+|||++++++....
T Consensus        53 ~~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l------~HpnIv~l~~~~~~~~  126 (398)
T 4b99_A           53 GDEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHF------KHDNIIAIKDILRPTV  126 (398)
T ss_dssp             CSSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHC------CCTTBCCEEEECCCSS
T ss_pred             CCCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhc------CCCCcceEeeeeeccc
Confidence            368999999999999999999999999999999986542   3345788999999999      8999999999887532


Q ss_pred             --CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          112 --PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       112 --~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                        .+...+|||||||+++|.+++...  ..+++..++.+++||+.||+|||++ |||||||||+|||+            
T Consensus       127 ~~~~~~~~~ivmE~~~g~L~~~i~~~--~~l~~~~~~~~~~qil~al~ylH~~-~iiHRDlKP~NIl~------------  191 (398)
T 4b99_A          127 PYGEFKSVYVVLDLMESDLHQIIHSS--QPLTLEHVRYFLYQLLRGLKYMHSA-QVIHRDLKPSNLLV------------  191 (398)
T ss_dssp             CTTTCCCEEEEEECCSEEHHHHHTSS--SCCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCGGGEEE------------
T ss_pred             ccccCCEEEEEEeCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-cCcCCCcCcccccc------------
Confidence              244689999999988899888643  4699999999999999999999997 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc--
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--  267 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~--  267 (447)
                                                                                  +..+.+||+|||+|....  
T Consensus       192 ------------------------------------------------------------~~~~~~Ki~DFGla~~~~~~  211 (398)
T 4b99_A          192 ------------------------------------------------------------NENCELKIGDFGMARGLCTS  211 (398)
T ss_dssp             ------------------------------------------------------------CTTCCEEECCCTTCBCC---
T ss_pred             ------------------------------------------------------------CCCCCEEEeecceeeecccC
Confidence                                                                        446789999999997542  


Q ss_pred             -----cccccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          268 -----KQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       268 -----~~~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                           ......+||+.|+|||++.+. .|+.++||||+||++|+|++|+.||.+.      +...++..+....|.++..
T Consensus       212 ~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~------~~~~~l~~I~~~~g~p~~~  285 (398)
T 4b99_A          212 PAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGK------NYVHQLQLIMMVLGTPSPA  285 (398)
T ss_dssp             ----CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCS------SHHHHHHHHHHHHCCCCGG
T ss_pred             ccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCC------CHHHHHHHHHHhcCCCChH
Confidence                 223456899999999999875 4689999999999999999999999876      5788899999999998866


Q ss_pred             hhhCCCCcc--chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          342 IAIGGAQSK--DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       342 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                      .........  .++..      ........+..+       ....++++.+||.+||+.||++||||+|+|+||||+...
T Consensus       286 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-------~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~  352 (398)
T 4b99_A          286 VIQAVGAERVRAYIQS------LPPRQPVPWETV-------YPGADRQALSLLGRMLRFEPSARISAAAALRHPFLAKYH  352 (398)
T ss_dssp             GTC-----CHHHHHHS------SCCCCCCCHHHH-------STTCCHHHHHHHHHHSCSSTTTSCCHHHHTTSGGGTTTC
T ss_pred             Hhhhhhhhhhhhhhhc------CCCcCCCCHHHh-------CCCCCHHHHHHHHHHCcCChhHCcCHHHHhcCHhhCcCC
Confidence            532211110  00000      000000011111       123466889999999999999999999999999999765


Q ss_pred             CCc
Q 013220          420 STR  422 (447)
Q Consensus       420 ~~~  422 (447)
                      ...
T Consensus       353 ~p~  355 (398)
T 4b99_A          353 DPD  355 (398)
T ss_dssp             CGG
T ss_pred             CCc
Confidence            443

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=3e-54  Score=421.96  Aligned_cols=251  Identities=29%  Similarity=0.416  Sum_probs=204.9

Q ss_pred             CceEEEEeecccCceEEEEEEeC---CCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDT---RTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~---~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      ++|++.+.||+|+||+||+|++.   .+++.||||+++...   .....+.+|+++++.+      +|||||+++++|.+
T Consensus        24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l------~HpnIv~l~~~~~~   97 (304)
T 3ubd_A           24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEV------NHPFIVKLHYAFQT   97 (304)
T ss_dssp             GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCC------CCTTEECEEEEEEE
T ss_pred             cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHC------CCCCCCeEEEEEEE
Confidence            67999999999999999999874   468899999886432   2233577899988888      89999999999986


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                      .    ..+|+||||| |++|.+.+...  ..+++..++.++.||+.||+|||++ ||+||||||+|||+           
T Consensus        98 ~----~~~~ivmEy~~gg~L~~~l~~~--~~l~e~~~~~~~~qi~~aL~ylH~~-~IiHRDlKp~NILl-----------  159 (304)
T 3ubd_A           98 E----GKLYLILDFLRGGDLFTRLSKE--VMFTEEDVKFYLAELALALDHLHSL-GIIYRDLKPENILL-----------  159 (304)
T ss_dssp             T----TEEEEEECCCTTCEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSSCCGGGEEE-----------
T ss_pred             C----CEEEEEEEcCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CCcCCCCCHHHeEE-----------
Confidence            4    6899999999 89999998754  4599999999999999999999997 99999999999999           


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc-
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN-  267 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~-  267 (447)
                                                                                   +.++.+||+|||+|+... 
T Consensus       160 -------------------------------------------------------------~~~g~vKl~DFGla~~~~~  178 (304)
T 3ubd_A          160 -------------------------------------------------------------DEEGHIKLTDFGLSKESID  178 (304)
T ss_dssp             -------------------------------------------------------------CTTSCEEEESSEEEEC---
T ss_pred             -------------------------------------------------------------cCCCCEEecccccceeccC
Confidence                                                                         446789999999997543 


Q ss_pred             --cccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          268 --KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       268 --~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                        ......+||+.|+|||++.+..|+.++|||||||++|+|++|+.||.+.+      ....+..               
T Consensus       179 ~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~------~~~~~~~---------------  237 (304)
T 3ubd_A          179 HEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKD------RKETMTM---------------  237 (304)
T ss_dssp             --CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHH---------------
T ss_pred             CCccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcC------HHHHHHH---------------
Confidence              22345689999999999999999999999999999999999999997653      2222222               


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCCh-----HHHhcCccccccc
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA-----QQCLQHPWLSLRN  419 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta-----~elL~hp~f~~~~  419 (447)
                                                 +....+.++..+++++.+||.+||+.||++|||+     +|+++||||+..+
T Consensus       238 ---------------------------i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~Hp~f~~id  289 (304)
T 3ubd_A          238 ---------------------------ILKAKLGMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTID  289 (304)
T ss_dssp             ---------------------------HHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHTSGGGTTCC
T ss_pred             ---------------------------HHcCCCCCCCcCCHHHHHHHHHHcccCHHHCCCCCcCCHHHHHcCccccCCC
Confidence                                       2222334556678899999999999999999985     7999999999754

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=6.5e-53  Score=417.56  Aligned_cols=253  Identities=24%  Similarity=0.310  Sum_probs=207.6

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      +.|++.++||+|+||+||+|++..+++.||||+++.+..    ..+|+++++.+      +|||||+++++|.+.    .
T Consensus        58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~----~~~E~~il~~l------~HpnIV~l~~~~~~~----~  123 (336)
T 4g3f_A           58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF----RVEELVACAGL------SSPRIVPLYGAVREG----P  123 (336)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC----CTHHHHTTTTC------CCTTBCCEEEEEEET----T
T ss_pred             hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh----HHHHHHHHHhC------CCCCCCcEEEEEEEC----C
Confidence            579999999999999999999999999999999876532    35799999888      899999999999854    6


Q ss_pred             eEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          116 HLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       116 ~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      .+||||||| |++|.+++...  ..+++..++.++.||+.||+|||++ |||||||||+|||++                
T Consensus       124 ~~~ivmEy~~gg~L~~~l~~~--~~l~e~~~~~~~~qi~~aL~ylH~~-~IiHRDlKp~NILl~----------------  184 (336)
T 4g3f_A          124 WVNIFMELLEGGSLGQLIKQM--GCLPEDRALYYLGQALEGLEYLHTR-RILHGDVKADNVLLS----------------  184 (336)
T ss_dssp             EEEEEECCCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTT-TEECSCCCGGGEEEC----------------
T ss_pred             EEEEEEeccCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CceecccCHHHEEEe----------------
Confidence            899999999 89999999754  4599999999999999999999997 999999999999993                


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCccc-ceeEeecCcccccccc----
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDM-RCKVVDFGNACRANKQ----  269 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~kL~Dfg~a~~~~~~----  269 (447)
                                                                              .++ .+||+|||+|+.....    
T Consensus       185 --------------------------------------------------------~~g~~vKl~DFGla~~~~~~~~~~  208 (336)
T 4g3f_A          185 --------------------------------------------------------SDGSRAALCDFGHALCLQPDGLGK  208 (336)
T ss_dssp             --------------------------------------------------------TTSCCEEECCCTTCEEC-------
T ss_pred             --------------------------------------------------------CCCCEEEEeeCCCCeEccCCCccc
Confidence                                                                    343 5999999999754321    


Q ss_pred             ----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          270 ----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       270 ----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                          ....+||+.|+|||++.+..|+.++|||||||++|+|++|+.||.+.+....      +..+..   ..+.     
T Consensus       209 ~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~------~~~i~~---~~~~-----  274 (336)
T 4g3f_A          209 SLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPL------CLKIAS---EPPP-----  274 (336)
T ss_dssp             -----CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCC------HHHHHH---SCCG-----
T ss_pred             ceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHH------HHHHHc---CCCC-----
Confidence                1224799999999999999999999999999999999999999976642211      111111   0000     


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHH-------------hcC
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQC-------------LQH  412 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~el-------------L~h  412 (447)
                                                     ...++..+++++.+||.+||+.||++|||++|+             |+|
T Consensus       275 -------------------------------~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~l~h  323 (336)
T 4g3f_A          275 -------------------------------IREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKS  323 (336)
T ss_dssp             -------------------------------GGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTSSCS
T ss_pred             -------------------------------chhcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhhhhhccC
Confidence                                           012445667899999999999999999999997             689


Q ss_pred             cccccccCCc
Q 013220          413 PWLSLRNSTR  422 (447)
Q Consensus       413 p~f~~~~~~~  422 (447)
                      ||+.+....+
T Consensus       324 Pw~~~~~~Pr  333 (336)
T 4g3f_A          324 PWKGEYKEPR  333 (336)
T ss_dssp             CSSSSCCCCC
T ss_pred             CCcCCCCCCC
Confidence            9998766443

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=3.8e-52  Score=417.79  Aligned_cols=292  Identities=26%  Similarity=0.369  Sum_probs=215.6

Q ss_pred             CceEEEEeecccCceEEEEEEeC---CCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDT---RTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~---~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.++||+|+||+||+|++.   .+++.||+|.+..... ...+.+|+++|+.+.     +|+||++++++|...  
T Consensus        21 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~-~~~~~~E~~~l~~~~-----~h~nIv~l~~~~~~~--   92 (361)
T 4f9c_A           21 NVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSH-PIRIAAELQCLTVAG-----GQDNVMGVKYCFRKN--   92 (361)
T ss_dssp             GTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSC-HHHHHHHHHHHHHTC-----SBTTBCCCSEEEEET--
T ss_pred             CcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccC-HHHHHHHHHHHHHhc-----CCCCCceEEEEEEEC--
Confidence            68999999999999999999864   4688999998765533 446788999999885     799999999999854  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                        +++|+||||| +++|.+++.     .+++..++.+++||+.||+|||++ ||+||||||+|||++.            
T Consensus        93 --~~~~lvmE~~~g~~L~~~~~-----~l~~~~~~~~~~qll~al~ylH~~-gIiHRDiKPeNiLl~~------------  152 (361)
T 4f9c_A           93 --DHVVIAMPYLEHESFLDILN-----SLSFQEVREYMLNLFKALKRIHQF-GIVHRDVKPSNFLYNR------------  152 (361)
T ss_dssp             --TEEEEEEECCCCCCHHHHHT-----TCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEET------------
T ss_pred             --CEEEEEEeCCCcccHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHHC-CeEeCcCCHHHeEEeC------------
Confidence              7899999999 889998873     489999999999999999999997 9999999999999943            


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc---
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---  268 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~---  268 (447)
                                                                                 ....+||+|||+|.....   
T Consensus       153 -----------------------------------------------------------~~~~~kl~DFGla~~~~~~~~  173 (361)
T 4f9c_A          153 -----------------------------------------------------------RLKKYALVDFGLAQGTHDTKI  173 (361)
T ss_dssp             -----------------------------------------------------------TTTEEEECCCTTCEECTTCSC
T ss_pred             -----------------------------------------------------------CCCeEEECcCCCCcccCCccc
Confidence                                                                       135799999999964321   


Q ss_pred             ----------------------------ccccCCCCCCccChHHhhcCC-CCccchhHhHHHHHHHHhhCCCCCCCCCCC
Q 013220          269 ----------------------------QFAEEIQTRQYRAPEVILRAG-YSFSVDMWSFACTAFELATGDMLFAPKSGQ  319 (447)
Q Consensus       269 ----------------------------~~~~~~gt~~y~aPE~l~~~~-~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~  319 (447)
                                                  ..+..+||+.|+|||++.+.. |+.++||||+||++|+|++|+.||...+  
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~~~--  251 (361)
T 4f9c_A          174 ELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKAS--  251 (361)
T ss_dssp             GGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSCCS--
T ss_pred             cccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCCCCC--
Confidence                                        123357999999999998864 8999999999999999999999997654  


Q ss_pred             CCCCchHHHHHHHHHhCCCCHHhh-hCCCCccchhcccc--h----hhhhhhcccC--chhHH---hhhhcCCChhhHHH
Q 013220          320 GFCEDEDHLALMMELIGKMPRKIA-IGGAQSKDYFDRHG--D----LKRIRRLKFW--SLDRL---LVDKYRFSETDARE  387 (447)
Q Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~--~----~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~  387 (447)
                         ++..++..+.+++|..+.... ..............  +    ....+.....  .....   ..........++++
T Consensus       252 ---~~~~~l~~I~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~is~~  328 (361)
T 4f9c_A          252 ---DDLTALAQIMTIRGSRETIQAAKTFGKSILCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGWNEVPDE  328 (361)
T ss_dssp             ---SHHHHHHHHHHHHCHHHHHHHHHHTTEEEEESSCCCCCCHHHHHHHHC----------------------CTTCCHH
T ss_pred             ---CHHHHHHHHHHhcCCccchhhhhhccccccccccCcchhhhHHHHhhccccccccccccccccccccccccccCCHH
Confidence               577888899998886543221 11000000000000  0    0000000000  00000   00011122345778


Q ss_pred             HHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          388 FAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       388 l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                      +.|||.+||++||++||||+|+|+||||++.+
T Consensus       329 a~DLl~~lL~~dP~~R~ta~eaL~Hp~f~~i~  360 (361)
T 4f9c_A          329 AYDLLDKLLDLNPASRITAEEALLHPFFKDMS  360 (361)
T ss_dssp             HHHHHHHHTCSCTTTSCCHHHHHTSGGGTTC-
T ss_pred             HHHHHHHHCcCChhHCcCHHHHhcCcccCCCC
Confidence            99999999999999999999999999999753

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=2.3e-51  Score=411.87  Aligned_cols=336  Identities=44%  Similarity=0.851  Sum_probs=282.6

Q ss_pred             CCCCCCccccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCC----
Q 013220           18 SYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGD----   93 (447)
Q Consensus        18 ~~~~~~~~~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~----   93 (447)
                      .|+.|+|+|+..|+.+..++|++.+.||+|+||+||+|++..+++.||||++..+......+.+|+++++.+.+..    
T Consensus         1 ~y~~~~~~p~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~   80 (373)
T 1q8y_A            1 DYRPGGYHPAFKGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKE   80 (373)
T ss_dssp             ------CCCCCTTCEETTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHH
T ss_pred             CCCCCCceeeecCCcccCCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCccchhhhhHHHHHHHHhhcccccch
Confidence            4899999999999999889999999999999999999999999999999999877666778899999999997543    


Q ss_pred             -CCCcceeeeecccccccCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCC
Q 013220           94 -PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKP  172 (447)
Q Consensus        94 -~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp  172 (447)
                       ...|+||+++++++....+++..+++|||+++++|.+++.......+++..+..++.||+.||+|||++.||+||||||
T Consensus        81 ~~~~~~~i~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~~ivH~Dikp  160 (373)
T 1q8y_A           81 DSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKP  160 (373)
T ss_dssp             HHHHHTTBCCCCEEEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSG
T ss_pred             hccccchHHHHHHHhhccCCCCceEEEEEecCCCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcCCEEecCCCh
Confidence             1138899999999988766667999999999999999987755566999999999999999999999933999999999


Q ss_pred             CCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcc
Q 013220          173 ENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGID  252 (447)
Q Consensus       173 ~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (447)
                      +||++......                                                                  +..
T Consensus       161 ~NIll~~~~~~------------------------------------------------------------------~~~  174 (373)
T 1q8y_A          161 ENVLMEIVDSP------------------------------------------------------------------ENL  174 (373)
T ss_dssp             GGEEEEEEETT------------------------------------------------------------------TTE
T ss_pred             HHeEEeccCCC------------------------------------------------------------------cCc
Confidence            99999542100                                                                  224


Q ss_pred             cceeEeecCcccccccccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHH
Q 013220          253 MRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMM  332 (447)
Q Consensus       253 ~~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~  332 (447)
                      ..++|+|||++...........||+.|+|||++.+..++.++|||||||++|+|++|..||...+......+...+..+.
T Consensus       175 ~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~  254 (373)
T 1q8y_A          175 IQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQII  254 (373)
T ss_dssp             EEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHH
T ss_pred             ceEEEcccccccccCCCCCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHHHHH
Confidence            57999999999877766667789999999999999999999999999999999999999999877666666888899999


Q ss_pred             HHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          333 ELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       333 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                      +.+|..|..+.........+|...+....+.....+.+...+.....++...+.++.+||.+||+.||++|||++|+|+|
T Consensus       255 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  334 (373)
T 1q8y_A          255 ELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNH  334 (373)
T ss_dssp             HHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTC
T ss_pred             HhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHHHHhhC
Confidence            99999999988888877788887777777777788888888888889999999999999999999999999999999999


Q ss_pred             ccccccc
Q 013220          413 PWLSLRN  419 (447)
Q Consensus       413 p~f~~~~  419 (447)
                      |||+...
T Consensus       335 p~f~~~~  341 (373)
T 1q8y_A          335 PWLKDTL  341 (373)
T ss_dssp             GGGTTCT
T ss_pred             hhhhccc
Confidence            9999754

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=4.7e-51  Score=399.59  Aligned_cols=255  Identities=21%  Similarity=0.321  Sum_probs=194.7

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC-
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP-  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~-  112 (447)
                      ++|++.+.||+|+||+||+|++..+++.||||+++..  ....+.+.+|+++|+.+      +|||||+++++|..... 
T Consensus         5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l------~HpnIV~~~~~~~~~~~~   78 (299)
T 4g31_A            5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKL------EHPGIVRYFNAWLEKNTT   78 (299)
T ss_dssp             HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTC------CCTTBCCEEEEEEEEC--
T ss_pred             hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhC------CCCCCCeEEEEEEecCcc
Confidence            3699999999999999999999999999999987542  33456788999999999      89999999999876432 


Q ss_pred             -------CcceEEEEEecc-cccHHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCC
Q 013220          113 -------NGQHLCMVLEFL-GDSLLRLIKYSRY-KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP  183 (447)
Q Consensus       113 -------~~~~~~lvmE~~-~~~L~~~~~~~~~-~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~  183 (447)
                             ...++|+||||| +++|.+++..... ...+...++.++.||+.||+|||++ ||+||||||+|||+      
T Consensus        79 ~~~~~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~-~IiHRDlKp~NILl------  151 (299)
T 4g31_A           79 EKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSK-GLMHRDLKPSNIFF------  151 (299)
T ss_dssp             --------CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEE------
T ss_pred             ccccccCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHC-cCccccCcHHHeEE------
Confidence                   234689999999 8999998865321 2245567889999999999999997 99999999999999      


Q ss_pred             CCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcc
Q 013220          184 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  263 (447)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a  263 (447)
                                                                                        +.++.+||+|||+|
T Consensus       152 ------------------------------------------------------------------~~~~~vKl~DFGla  165 (299)
T 4g31_A          152 ------------------------------------------------------------------TMDDVVKVGDFGLV  165 (299)
T ss_dssp             ------------------------------------------------------------------CTTCCEEECCCCCC
T ss_pred             ------------------------------------------------------------------CCCCcEEEccCccc
Confidence                                                                              44568999999999


Q ss_pred             cccccc---------------cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHH
Q 013220          264 CRANKQ---------------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHL  328 (447)
Q Consensus       264 ~~~~~~---------------~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~  328 (447)
                      +.....               .+..+||+.|+|||++.+..|+.++|||||||++|+|++   ||...        ....
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~--------~~~~  234 (299)
T 4g31_A          166 TAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQ--------MERV  234 (299)
T ss_dssp             --------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSH--------HHHH
T ss_pred             eecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCc--------cHHH
Confidence            754321               123479999999999999999999999999999999995   77422        2222


Q ss_pred             HHHHHHh-CCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChH
Q 013220          329 ALMMELI-GKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQ  407 (447)
Q Consensus       329 ~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~  407 (447)
                      ..+..+. +..|..                                       ....++.+.+||.+||+.||++|||+.
T Consensus       235 ~~~~~~~~~~~p~~---------------------------------------~~~~~~~~~~li~~~L~~dP~~Rps~~  275 (299)
T 4g31_A          235 RTLTDVRNLKFPPL---------------------------------------FTQKYPCEYVMVQDMLSPSPMERPEAI  275 (299)
T ss_dssp             HHHHHHHTTCCCHH---------------------------------------HHHHCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             HHHHHHhcCCCCCC---------------------------------------CcccCHHHHHHHHHHcCCChhHCcCHH
Confidence            2222221 111111                                       112344677899999999999999999


Q ss_pred             HHhcCccccccc
Q 013220          408 QCLQHPWLSLRN  419 (447)
Q Consensus       408 elL~hp~f~~~~  419 (447)
                      |+|+||||++.+
T Consensus       276 eil~h~~~~~~~  287 (299)
T 4g31_A          276 NIIENAVFEDLD  287 (299)
T ss_dssp             HHHTSGGGCCC-
T ss_pred             HHhcCHhhCCCC
Confidence            999999998754

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=2.2e-49  Score=420.38  Aligned_cols=264  Identities=24%  Similarity=0.401  Sum_probs=216.5

Q ss_pred             CccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh-HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           30 GDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA-AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        30 g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      +.++  ++|++.++||+|+||+||+|++..+++.||+|++... ....+.+.+|+++|+.+      +|||||+++++|.
T Consensus       153 ~~il--~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l------~hpnIv~l~~~~~  224 (573)
T 3uto_A          153 DHVL--DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVL------RHPTLVNLHDAFE  224 (573)
T ss_dssp             SCGG--GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHT------CCTTBCCEEEEEE
T ss_pred             CcCc--cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhC------CCCCCCeEEEEEE
Confidence            3444  5899999999999999999999999999999987653 33456788999999999      8999999999998


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCc
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                      +.    ..+||||||| |++|.+.+.... ..+++..++.+++||+.||+|||++ ||+||||||+|||+..        
T Consensus       225 ~~----~~~~iv~E~~~gg~L~~~i~~~~-~~l~e~~~~~~~~qi~~al~ylH~~-~iiHRDlKp~Nill~~--------  290 (573)
T 3uto_A          225 DD----NEMVMIYEFMSGGELFEKVADEH-NKMSEDEAVEYMRQVCKGLCHMHEN-NYVHLDLKPENIMFTT--------  290 (573)
T ss_dssp             CS----SEEEEEEECCCCCBHHHHHTCTT-SCEEHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEESS--------
T ss_pred             EC----CEEEEEEeecCCCcHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHC-CeeeccCChhhccccC--------
Confidence            54    7899999999 889998885432 4589999999999999999999997 9999999999999943        


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                    +..+.+||+|||+|....
T Consensus       291 --------------------------------------------------------------~~~~~vKl~DFG~a~~~~  308 (573)
T 3uto_A          291 --------------------------------------------------------------KRSNELKLIDFGLTAHLD  308 (573)
T ss_dssp             --------------------------------------------------------------SSCCCEEECCCSSCEECC
T ss_pred             --------------------------------------------------------------CCCCCEEEeeccceeEcc
Confidence                                                                          234679999999998654


Q ss_pred             cc--cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          268 KQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       268 ~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                      ..  ....+||+.|+|||++.+..|+.++|||||||++|+|++|..||.+.+      ....+..+......++..    
T Consensus       309 ~~~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~------~~~~~~~i~~~~~~~~~~----  378 (573)
T 3uto_A          309 PKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGEN------DDETLRNVKSCDWNMDDS----  378 (573)
T ss_dssp             TTSEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSS------HHHHHHHHHTTCCCCCSG----
T ss_pred             CCCceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC------HHHHHHHHHhCCCCCCcc----
Confidence            32  344689999999999999999999999999999999999999997652      333333332211111110    


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                                                        ....+++++.+||.+||+.||.+|||++|+|+||||+..+..
T Consensus       379 ----------------------------------~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~Hpw~~~~~~~  420 (573)
T 3uto_A          379 ----------------------------------AFSGISEDGKDFIRKLLLADPNTRMTIHQALEHPWLTPGNAP  420 (573)
T ss_dssp             ----------------------------------GGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSTTTSCCCCT
T ss_pred             ----------------------------------cccCCCHHHHHHHHHHccCChhHCcCHHHHhcCcCcCCCCCC
Confidence                                              112346789999999999999999999999999999976543

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=1.3e-47  Score=387.41  Aligned_cols=323  Identities=31%  Similarity=0.551  Sum_probs=259.8

Q ss_pred             ccCCCCCCCc-cccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCC
Q 013220           15 GIDSYRKGGY-HAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGD   93 (447)
Q Consensus        15 ~~~~~~~~~~-~~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~   93 (447)
                      ....|....| .++..|+.+. ++|++.+.||+|+||+||+|++..+++.||||+++........+..|+++++.+.+..
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~  111 (382)
T 2vx3_A           33 YNDGYDDDNYDYIVKNGEKWM-DRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHD  111 (382)
T ss_dssp             BGGGTBCTTSCBCCCTTCEET-TTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHCS
T ss_pred             CcCCcCCCCCcEEeecCCEee-eeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccHHHHHHHHHHHHHHHHHHhcc
Confidence            3345666666 5778899886 7999999999999999999999999999999999877766778889999999997655


Q ss_pred             CCCcceeeeecccccccCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh-hCCcccccCCC
Q 013220           94 PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR-ELGIIHTDLKP  172 (447)
Q Consensus        94 ~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~-~~gIiH~Dikp  172 (447)
                      ...+++|+++++.+...    ...++||||++++|.+++.......+++..++.++.|++.||+|||+ +.||+||||||
T Consensus       112 ~~~~~~iv~~~~~~~~~----~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~~~ivHrDlkp  187 (382)
T 2vx3_A          112 TEMKYYIVHLKRHFMFR----NHLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKP  187 (382)
T ss_dssp             SGGGGGBCCEEEEEEET----TEEEEEEECCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTSTTTCEECCCCSG
T ss_pred             cccceeEEEeeeeeccC----CceEEEEecCCCCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccCCCCEEcCCCCc
Confidence            55677899999988754    68999999998899999877655669999999999999999999994 24999999999


Q ss_pred             CCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcc
Q 013220          173 ENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGID  252 (447)
Q Consensus       173 ~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (447)
                      +|||+..                                                                      +..
T Consensus       188 ~NIll~~----------------------------------------------------------------------~~~  197 (382)
T 2vx3_A          188 ENILLCN----------------------------------------------------------------------PKR  197 (382)
T ss_dssp             GGEEESS----------------------------------------------------------------------TTS
T ss_pred             ccEEEec----------------------------------------------------------------------CCC
Confidence            9999943                                                                      234


Q ss_pred             cceeEeecCcccccccccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHH
Q 013220          253 MRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMM  332 (447)
Q Consensus       253 ~~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~  332 (447)
                      ..+||+|||++..........+||+.|+|||++.+..++.++|||||||++|+|++|..||.+.      +....+..+.
T Consensus       198 ~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~------~~~~~~~~i~  271 (382)
T 2vx3_A          198 SAIKIVDFGSSCQLGQRIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGA------NEVDQMNKIV  271 (382)
T ss_dssp             CCEEECCCTTCEETTCCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHH
T ss_pred             CcEEEEeccCceecccccccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHH
Confidence            6799999999988777667778999999999999999999999999999999999999999876      4778888899


Q ss_pred             HHhCCCCHHhhhCCCCccchhcccchhhh-----------hhhcccCchhHHhhhh-----------cCCChhhHHHHHH
Q 013220          333 ELIGKMPRKIAIGGAQSKDYFDRHGDLKR-----------IRRLKFWSLDRLLVDK-----------YRFSETDAREFAE  390 (447)
Q Consensus       333 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~  390 (447)
                      +..+..+..+.........+|....+...           ........+..++...           ........+.+.+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  351 (382)
T 2vx3_A          272 EVLGIPPAHILDQAPKARKFFEKLPDGTWNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKD  351 (382)
T ss_dssp             HHHCSCCHHHHTTCTTHHHHEEECTTSCEEECCCCTTCCCSCCTTCSCHHHHHTTTTTSGGGTTTTCTTCCHHHHHHHHH
T ss_pred             HHhCCCCHHHHHhhHHHHHHHHhccccccccccccccccccCCcchhhHHHHhhccccCCCccccccccccchhhHHHHH
Confidence            99999998887766666666554332110           0111111222222111           0122334568999


Q ss_pred             HHhhccccCCCCCCChHHHhcCcccccc
Q 013220          391 FLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       391 ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                      ||.+||+.||++|||++|+|+||||+..
T Consensus       352 li~~mL~~dP~~Rpta~e~L~hp~f~~~  379 (382)
T 2vx3_A          352 LILRMLDYDPKTRIQPYYALQHSFFKKT  379 (382)
T ss_dssp             HHHHHTCSCTTTSCCHHHHTTSGGGCC-
T ss_pred             HHHHhcCCChhhCCCHHHHhcCcccccC
Confidence            9999999999999999999999999864

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=7.6e-48  Score=395.54  Aligned_cols=305  Identities=36%  Similarity=0.582  Sum_probs=251.7

Q ss_pred             ccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           28 RVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        28 ~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      ..++.+. ++|++.+.||+|+||+||+|++..+++.||||+++......+.+.+|+++++.+.+....+|+||+++++.+
T Consensus        90 ~~~~~~~-~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~  168 (429)
T 3kvw_A           90 VPHDHVA-YRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENF  168 (429)
T ss_dssp             CTTCEET-TTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEE
T ss_pred             cCCCccc-CcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeec
Confidence            3456665 799999999999999999999999999999999988777778889999999999988888999999999998


Q ss_pred             cccCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCc
Q 013220          108 KHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                      ...    .++++||||++++|.+++.......+++..++.++.||+.||+|||++ ||+||||||+|||+..        
T Consensus       169 ~~~----~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivHrDlKp~NILl~~--------  235 (429)
T 3kvw_A          169 TFR----NHICMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKN-RIIHCDLKPENILLKQ--------  235 (429)
T ss_dssp             EET----TEEEEEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHH-TEECSCCSGGGEEESS--------
T ss_pred             ccC----CeEEEEEeccCCCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHeEEcc--------
Confidence            854    689999999988999998876666799999999999999999999997 9999999999999943        


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                    +....+||+|||++....
T Consensus       236 --------------------------------------------------------------~~~~~vkL~DFG~a~~~~  253 (429)
T 3kvw_A          236 --------------------------------------------------------------QGRSGIKVIDFGSSCYEH  253 (429)
T ss_dssp             --------------------------------------------------------------TTSCCEEECCCTTCEETT
T ss_pred             --------------------------------------------------------------CCCcceEEeecccceecC
Confidence                                                                          112339999999998777


Q ss_pred             cccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          268 KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       268 ~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                      ......+||+.|+|||++.+..++.++|||||||++|+|++|..||.+.      .....+..+++.+|..+..+.....
T Consensus       254 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~------~~~~~l~~i~~~~~~p~~~~~~~~~  327 (429)
T 3kvw_A          254 QRVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGE------DEGDQLACMIELLGMPSQKLLDASK  327 (429)
T ss_dssp             CCCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHHHCCCCHHHHHTBT
T ss_pred             CcccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHcCCCCHHHHHhhh
Confidence            6667778999999999999999999999999999999999999999876      4778899999999999999877766


Q ss_pred             Cccchhcccchhhhhhhccc-----------------------CchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC
Q 013220          348 QSKDYFDRHGDLKRIRRLKF-----------------------WSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP  404 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp  404 (447)
                      ....++...+..........                       ..+...      ++...++.+.+||.+||++||++||
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~~~~~~~~dli~~~L~~dP~~Rp  401 (429)
T 3kvw_A          328 RAKNFVSSKGYPRYCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGNA------LKGCDDPLFLDFLKQCLEWDPAVRM  401 (429)
T ss_dssp             THHHHBCTTSCBTTSCEECCCC--CEECCEECTTCCEECSTTCSCHHHH------TTTCCCHHHHHHHHHHTCSSTTTSC
T ss_pred             hhhhccCCCCCcccccccccccccccccccccchhhccCCccchhhHhh------ccccchHHHHHHHHHHCCCChhhCC
Confidence            66666544432211100000                       001111      1223366899999999999999999


Q ss_pred             ChHHHhcCcccccccC
Q 013220          405 TAQQCLQHPWLSLRNS  420 (447)
Q Consensus       405 ta~elL~hp~f~~~~~  420 (447)
                      |++|+|+||||+....
T Consensus       402 ta~e~L~Hpw~~~~~~  417 (429)
T 3kvw_A          402 TPGQALRHPWLRRRLP  417 (429)
T ss_dssp             CHHHHHTSTTTC----
T ss_pred             CHHHHhCChhhccCCC
Confidence            9999999999997643

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=9.2e-49  Score=416.17  Aligned_cols=258  Identities=24%  Similarity=0.348  Sum_probs=212.5

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH----hHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ----FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~----~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      -++|++.+.||+|+||.||+|++..+++.||||++.....    ......+|..++..+...   +|||||+++.+|.+.
T Consensus       188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~---~HP~IV~l~~~f~~~  264 (689)
T 3v5w_A          188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG---DCPFIVCMSYAFHTP  264 (689)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSS---CCTTBCCEEEEEECS
T ss_pred             hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhC---CCCCEeEEEEEEEEC
Confidence            3679999999999999999999999999999999875432    233455665566555433   899999999999854


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                          ..+||||||| ||+|..++...  ..+++..++.+++||+.||+|||++ |||||||||+|||+            
T Consensus       265 ----~~lylVmEy~~GGdL~~~l~~~--~~l~E~~a~~y~~qIl~aL~yLH~~-gIiHRDLKPeNILl------------  325 (689)
T 3v5w_A          265 ----DKLSFILDLMNGGDLHYHLSQH--GVFSEADMRFYAAEIILGLEHMHNR-FVVYRDLKPANILL------------  325 (689)
T ss_dssp             ----SEEEEEECCCCSCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHTT-TEECCCCSGGGEEE------------
T ss_pred             ----CEEEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCchHHeEE------------
Confidence                7899999999 99999998754  4599999999999999999999997 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                  +..+.+||+|||+|+.....
T Consensus       326 ------------------------------------------------------------d~~G~vKL~DFGlA~~~~~~  345 (689)
T 3v5w_A          326 ------------------------------------------------------------DEHGHVRISDLGLACDFSKK  345 (689)
T ss_dssp             ------------------------------------------------------------CTTSCEEECCCTTCEECSSC
T ss_pred             ------------------------------------------------------------eCCCCEEecccceeeecCCC
Confidence                                                                        45678999999999865543


Q ss_pred             -cccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          270 -FAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       270 -~~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                       ....+||+.|+|||++.+ ..|+.++|+|||||++|+|++|..||.+.+...      .. .+                
T Consensus       346 ~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~------~~-~i----------------  402 (689)
T 3v5w_A          346 KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKD------KH-EI----------------  402 (689)
T ss_dssp             CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCC------HH-HH----------------
T ss_pred             CCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH------HH-HH----------------
Confidence             345699999999999975 579999999999999999999999997643110      00 11                


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCC-----hHHHhcCccccccc
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLRN  419 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpt-----a~elL~hp~f~~~~  419 (447)
                                            ...+......++..+++++.+||.+||+.||.+|++     ++|+++||||+..+
T Consensus       403 ----------------------~~~i~~~~~~~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~HpfF~~id  457 (689)
T 3v5w_A          403 ----------------------DRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLD  457 (689)
T ss_dssp             ----------------------HHHHHHCCCCCCTTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTTSGGGTTCC
T ss_pred             ----------------------HHhhcCCCCCCCccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhcCccccCCC
Confidence                                  112223334466677889999999999999999998     79999999999864

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=8.1e-49  Score=383.51  Aligned_cols=251  Identities=22%  Similarity=0.352  Sum_probs=202.5

Q ss_pred             CCceEEEEeecccCceEEEEEEeC-----CCCeEEEEEEechh-HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDT-----RTSSYVALKIQKSA-AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~-----~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      ..+|.+.++||+|+||+||+|++.     .++..||||+++.. ....+.+.+|+++++.+      +|||||++++++.
T Consensus        12 r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l------~HpnIV~l~g~~~   85 (299)
T 4asz_A           12 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNL------QHEHIVKFYGVCV   85 (299)
T ss_dssp             GGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTC------CCTTBCCEEEEEC
T ss_pred             HHHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhC------CCCCCccEEEEEe
Confidence            468999999999999999999864     35789999988754 33456799999999999      8999999999998


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhc-----------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeE
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSR-----------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL  176 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~-----------~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nil  176 (447)
                      +.    ..++|||||| +|+|.+++....           ...+++..+..++.|++.||+|||++ +||||||||+|||
T Consensus        86 ~~----~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~-~iiHRDlKp~NIL  160 (299)
T 4asz_A           86 EG----DPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ-HFVHRDLATRNCL  160 (299)
T ss_dssp             SS----SSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEE
T ss_pred             eC----CEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC-CcccCccCHhhEE
Confidence            53    6899999999 899999986532           23589999999999999999999997 9999999999999


Q ss_pred             eeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCccccee
Q 013220          177 LVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCK  256 (447)
Q Consensus       177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  256 (447)
                      +                                                                        +.++.+|
T Consensus       161 l------------------------------------------------------------------------~~~~~~K  168 (299)
T 4asz_A          161 V------------------------------------------------------------------------GENLLVK  168 (299)
T ss_dssp             E------------------------------------------------------------------------CGGGCEE
T ss_pred             E------------------------------------------------------------------------CCCCcEE
Confidence            9                                                                        4467899


Q ss_pred             EeecCccccccccc-----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHH
Q 013220          257 VVDFGNACRANKQF-----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLAL  330 (447)
Q Consensus       257 L~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~  330 (447)
                      |+|||+|+......     ...+||+.|+|||++.+..|+.++|||||||++|+|++ |+.||.+.+      ....+..
T Consensus       169 i~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~------~~~~~~~  242 (299)
T 4asz_A          169 IGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS------NNEVIEC  242 (299)
T ss_dssp             ECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC------HHHHHHH
T ss_pred             ECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC------HHHHHHH
Confidence            99999997543221     22358999999999999999999999999999999998 899997652      2222222


Q ss_pred             HHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHh
Q 013220          331 MMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCL  410 (447)
Q Consensus       331 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL  410 (447)
                      +.+  |.                                       .+..|..+++++.+||.+||+.||++|||++|+ 
T Consensus       243 i~~--~~---------------------------------------~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i-  280 (299)
T 4asz_A          243 ITQ--GR---------------------------------------VLQRPRTCPQEVYELMLGCWQREPHMRKNIKGI-  280 (299)
T ss_dssp             HHH--TC---------------------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH-
T ss_pred             HHc--CC---------------------------------------CCCCCccchHHHHHHHHHHcCCChhHCcCHHHH-
Confidence            211  11                                       122455667889999999999999999999999 


Q ss_pred             cCccccc
Q 013220          411 QHPWLSL  417 (447)
Q Consensus       411 ~hp~f~~  417 (447)
                       |+|++.
T Consensus       281 -~~~L~~  286 (299)
T 4asz_A          281 -HTLLQN  286 (299)
T ss_dssp             -HHHHHH
T ss_pred             -HHHHHH
Confidence             457654

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=2.7e-47  Score=381.19  Aligned_cols=330  Identities=30%  Similarity=0.522  Sum_probs=243.7

Q ss_pred             ccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecc
Q 013220           26 AVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLID  105 (447)
Q Consensus        26 ~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~  105 (447)
                      ....|++++ ++|++.++||+|+||+||+|++..+++.||+|+++......+....|+++++.+.+.. ..|+||+++++
T Consensus        26 ~~~~g~~~~-~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~-~~h~~iv~~~~  103 (360)
T 3llt_A           26 SWKKGMLLN-NAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYTRSAKIEADILKKIQNDD-INNNNIVKYHG  103 (360)
T ss_dssp             CCCTTCEET-TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCHHHHHHHHHHHHHHHHTCCCS-TTGGGBCCEEE
T ss_pred             eeecceEec-CEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccchhhhhhhHHHHHHHHHhcccC-CCCCCeecccc
Confidence            456788886 7999999999999999999999999999999999876666778888999999997532 36999999999


Q ss_pred             cccccCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCC
Q 013220          106 HFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK  185 (447)
Q Consensus       106 ~~~~~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~  185 (447)
                      ++...    ...++||||++++|.+++.......+++..++.++.||+.||+|||++ ||+||||||+|||+........
T Consensus       104 ~~~~~----~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivHrDlkp~NIll~~~~~~~~  178 (360)
T 3llt_A          104 KFMYY----DHMCLIFEPLGPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKM-SLTHTDLKPENILLDDPYFEKS  178 (360)
T ss_dssp             EEEET----TEEEEEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEESCTTCCEE
T ss_pred             eeeEC----CeeEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeeCCCCcccEEEcccccccc
Confidence            98854    689999999999999999876656799999999999999999999996 9999999999999954210000


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccc
Q 013220          186 DPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR  265 (447)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~  265 (447)
                      ...                                               ...................+||+|||++..
T Consensus       179 ~~~-----------------------------------------------~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~  211 (360)
T 3llt_A          179 LIT-----------------------------------------------VRRVTDGKKIQIYRTKSTGIKLIDFGCATF  211 (360)
T ss_dssp             EEE-----------------------------------------------EECTTTCCEEEEEEESCCCEEECCCTTCEE
T ss_pred             ccc-----------------------------------------------hhcccccccccccccCCCCEEEEeccCcee
Confidence            000                                               000000000000001256799999999987


Q ss_pred             cccccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          266 ANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       266 ~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                      ........+||+.|+|||++.+..++.++|||||||++|+|++|..||...      .....+..+....+..|..+...
T Consensus       212 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~------~~~~~~~~~~~~~~~~p~~~~~~  285 (360)
T 3llt_A          212 KSDYHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTH------EHMEHLAMMESIIQPIPKNMLYE  285 (360)
T ss_dssp             TTSCCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             cCCCCcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCCC------cHHHHHHHHHHhcCCCCHHHHhh
Confidence            766666778999999999999999999999999999999999999999866      47778888899999999776432


Q ss_pred             CCCcc--chhcccchhhhhhhcccCchhHHhhhhcCC---ChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccc
Q 013220          346 GAQSK--DYFDRHGDLKRIRRLKFWSLDRLLVDKYRF---SETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  416 (447)
Q Consensus       346 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~  416 (447)
                      .....  .++.... ....-.................   +...++.+.+||.+||+.||++|||++|+|+||||+
T Consensus       286 ~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpta~elL~hp~f~  360 (360)
T 3llt_A          286 ATKTNGSKYVNKDE-LKLAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQIDPTLRPSPAELLKHKFLE  360 (360)
T ss_dssp             HTTSGGGGGEETTT-TEECTTTTCSCHHHHHHHHTCCCHHHHCCCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGC
T ss_pred             hhhccCccccCccc-ceecCcccccchhhhhhhhhcccccccchHHHHHHHHHHHhcCChhhCCCHHHHhcCcccC
Confidence            22211  1111000 0000000000001000000001   111236788999999999999999999999999996

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=3.2e-48  Score=384.27  Aligned_cols=248  Identities=22%  Similarity=0.338  Sum_probs=197.8

Q ss_pred             CCceEEEEeecccCceEEEEEEeC-----CCCeEEEEEEechh-HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDT-----RTSSYVALKIQKSA-AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~-----~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      ..+|.+.++||+|+||+||+|++.     .++..||||+++.. ....+.+.+|+++|+.+      +|||||++++++.
T Consensus        40 ~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l------~HpnIV~l~g~~~  113 (329)
T 4aoj_A           40 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTML------QHQHIVRFFGVCT  113 (329)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTC------CCTTBCCEEEEEC
T ss_pred             HHHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhC------CCCCCCcEEEEEE
Confidence            467999999999999999999764     36889999998754 34456899999999999      8999999999988


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhc-------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCC
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSR-------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPEN  174 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~-------------~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~N  174 (447)
                      ..    ..+||||||| +|+|.+++....             ...+++..+..++.|++.||+|||++ +||||||||+|
T Consensus       114 ~~----~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~-~iiHRDLKp~N  188 (329)
T 4aoj_A          114 EG----RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL-HFVHRDLATRN  188 (329)
T ss_dssp             SS----SSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGG
T ss_pred             EC----CEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC-CeecccccHhh
Confidence            53    6899999999 899999886432             13488999999999999999999996 99999999999


Q ss_pred             eEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccc
Q 013220          175 ILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMR  254 (447)
Q Consensus       175 ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (447)
                      ||+                                                                        +.++.
T Consensus       189 ILl------------------------------------------------------------------------~~~~~  196 (329)
T 4aoj_A          189 CLV------------------------------------------------------------------------GQGLV  196 (329)
T ss_dssp             EEE------------------------------------------------------------------------ETTTE
T ss_pred             EEE------------------------------------------------------------------------CCCCc
Confidence            999                                                                        44678


Q ss_pred             eeEeecCcccccccc-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHH
Q 013220          255 CKVVDFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHL  328 (447)
Q Consensus       255 ~kL~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~  328 (447)
                      +||+|||+|+.....     ....+||+.|+|||++.+..|+.++|||||||++|+|++ |+.||...+      ....+
T Consensus       197 ~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~------~~~~~  270 (329)
T 4aoj_A          197 VKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLS------NTEAI  270 (329)
T ss_dssp             EEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSC------HHHHH
T ss_pred             EEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCC------HHHHH
Confidence            999999999754322     233578999999999999999999999999999999998 899997652      22222


Q ss_pred             HHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHH
Q 013220          329 ALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQ  408 (447)
Q Consensus       329 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~e  408 (447)
                      ..+.+  |                                       .++..|..+++++.+||.+||+.||++|||++|
T Consensus       271 ~~i~~--g---------------------------------------~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~e  309 (329)
T 4aoj_A          271 DCITQ--G---------------------------------------RELERPRACPPEVYAIMRGCWQREPQQRHSIKD  309 (329)
T ss_dssp             HHHHH--T---------------------------------------CCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHH
T ss_pred             HHHHc--C---------------------------------------CCCCCcccccHHHHHHHHHHcCcChhHCcCHHH
Confidence            22211  1                                       112345566789999999999999999999999


Q ss_pred             HhcC
Q 013220          409 CLQH  412 (447)
Q Consensus       409 lL~h  412 (447)
                      ++++
T Consensus       310 i~~~  313 (329)
T 4aoj_A          310 VHAR  313 (329)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9864

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=3.2e-47  Score=375.49  Aligned_cols=328  Identities=29%  Similarity=0.492  Sum_probs=253.1

Q ss_pred             CccccccCccccCCceEEEEeecccCceEEEEEEe-CCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceee
Q 013220           23 GYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYD-TRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVI  101 (447)
Q Consensus        23 ~~~~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~-~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv  101 (447)
                      +++++..|+++. ++|++.+.||+|+||+||+|.+ ..+++.||+|+++......+.+.+|+++++.+.+.+...|++|+
T Consensus         2 ~~~~~~~g~~~~-~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~   80 (339)
T 1z57_A            2 MHLICQSGDVLS-ARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCV   80 (339)
T ss_dssp             GGGTCSTTCEET-TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBC
T ss_pred             CceeeecCCCcc-CceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCCchhHHHHHHHHHHHHhhhcCCCCceeeE
Confidence            567888999997 7999999999999999999998 56789999999987766678899999999999988777888999


Q ss_pred             eecccccccCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecC
Q 013220          102 RLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTI  181 (447)
Q Consensus       102 ~~~~~~~~~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~  181 (447)
                      ++++++...    ...++||||++++|.+.+.......+++..+..++.|++.||+|||++ ||+||||||+||++....
T Consensus        81 ~~~~~~~~~----~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~Dlkp~Nil~~~~~  155 (339)
T 1z57_A           81 QMLEWFEHH----GHICIVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSN-KLTHTDLKPENILFVQSD  155 (339)
T ss_dssp             CEEEEEEET----TEEEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEESCCC
T ss_pred             eeecccccC----CcEEEEEcCCCCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHC-CCcCCCCCHHHEEEeccc
Confidence            999998754    689999999999999988766545689999999999999999999997 999999999999995421


Q ss_pred             CCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecC
Q 013220          182 DPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFG  261 (447)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg  261 (447)
                      ...  ...                                                   +.............++|+|||
T Consensus       156 ~~~--~~~---------------------------------------------------~~~~~~~~~~~~~~~kl~Dfg  182 (339)
T 1z57_A          156 YTE--AYN---------------------------------------------------PKIKRDERTLINPDIKVVDFG  182 (339)
T ss_dssp             EEE--EEC-------------------------------------------------------CEEEEESCCCEEECCCS
T ss_pred             ccc--ccC---------------------------------------------------CccccccccccCCCceEeeCc
Confidence            000  000                                                   000000000124579999999


Q ss_pred             cccccccccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          262 NACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       262 ~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                      .+...........||+.|+|||++.+..++.++|||||||++|+|++|..||...      .....+..+....+..|..
T Consensus       183 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~------~~~~~~~~~~~~~~~~p~~  256 (339)
T 1z57_A          183 SATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTH------DSKEHLAMMERILGPLPKH  256 (339)
T ss_dssp             SCEETTSCCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCS------CHHHHHHHHHHHHCSCCHH
T ss_pred             ccccCccccccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCC------ChHHHHHHHHHHhCCCCHH
Confidence            9987666666678999999999999989999999999999999999999999865      4667788888999999988


Q ss_pred             hhhCCCCccchhcccch------hhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          342 IAIGGAQSKDYFDRHGD------LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      +.........+......      ...........    +..........++.+.+||.+||+.||++|||++|+|+||||
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~f  332 (339)
T 1z57_A          257 MIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKP----LKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALKHPFF  332 (339)
T ss_dssp             HHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCC----GGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTSGGG
T ss_pred             HHhhccchhHHhhccccccccccccchhhhcCcc----hhhhcccchhhHHHHHHHHHHHhCcCcccccCHHHHhcCHHH
Confidence            76544332221111111      00000000000    011112344567899999999999999999999999999999


Q ss_pred             cccc
Q 013220          416 SLRN  419 (447)
Q Consensus       416 ~~~~  419 (447)
                      +..+
T Consensus       333 ~~~~  336 (339)
T 1z57_A          333 DLLK  336 (339)
T ss_dssp             GGGG
T ss_pred             HHHh
Confidence            9754

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=1.5e-47  Score=397.28  Aligned_cols=311  Identities=29%  Similarity=0.443  Sum_probs=232.2

Q ss_pred             ccCCCCCCCccccccCcccc--CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHh
Q 013220           15 GIDSYRKGGYHAVRVGDLFN--GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAV   89 (447)
Q Consensus        15 ~~~~~~~~~~~~~~~g~~~~--~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l   89 (447)
                      ....+..+.|+++.+|+..-  .++|++.++||+|+||+||+|++..+++.||||++...   ....+.+.+|+++++.+
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l  118 (464)
T 3ttj_A           39 MSKSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCV  118 (464)
T ss_dssp             -------CCEEEEEC--CEEEEETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHC
T ss_pred             cccccccccceeeecCCcceeecCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhC
Confidence            34556677999999988221  37999999999999999999999999999999988643   34456788999999999


Q ss_pred             hcCCCCCcceeeeecccccccC--CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCccc
Q 013220           90 ADGDPSNEKCVIRLIDHFKHAG--PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIH  167 (447)
Q Consensus        90 ~~~~~~~~~~Iv~~~~~~~~~~--~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH  167 (447)
                            +|+||++++++|....  .+...+|+||||+++++.+.+.    ..+++..++.+++||+.||+|||++ ||+|
T Consensus       119 ------~hpnIv~l~~~~~~~~~~~~~~~~~lv~E~~~~~l~~~~~----~~l~~~~~~~~~~qil~aL~~lH~~-~iiH  187 (464)
T 3ttj_A          119 ------NHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQ----MELDHERMSYLLYQMLCGIKHLHSA-GIIH  187 (464)
T ss_dssp             ------CCTTBCCCSEEECSCCSTTTCCEEEEEEECCSEEHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHT-TCCC
T ss_pred             ------CCCCCCcEEEEEccCCccccCCeEEEEEeCCCCCHHHHHh----hcCCHHHHHHHHHHHHHHHHHHHHC-Cccc
Confidence                  7999999999987543  2346799999999777877764    3489999999999999999999996 9999


Q ss_pred             ccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCcc
Q 013220          168 TDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERC  247 (447)
Q Consensus       168 ~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (447)
                      |||||+|||+                                                                      
T Consensus       188 rDlkp~NIll----------------------------------------------------------------------  197 (464)
T 3ttj_A          188 RDLKPSNIVV----------------------------------------------------------------------  197 (464)
T ss_dssp             CCCCGGGEEE----------------------------------------------------------------------
T ss_pred             CCCChHhEEE----------------------------------------------------------------------
Confidence            9999999999                                                                      


Q ss_pred             CCCcccceeEeecCcccccccc--cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCch
Q 013220          248 LDGIDMRCKVVDFGNACRANKQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDE  325 (447)
Q Consensus       248 ~~~~~~~~kL~Dfg~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~  325 (447)
                        +.++.+||+|||++......  ....+||+.|+|||++.+..|+.++|||||||++|+|++|+.||.+.      +..
T Consensus       198 --~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~------~~~  269 (464)
T 3ttj_A          198 --KSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGR------DYI  269 (464)
T ss_dssp             --CTTSCEEECCCCCC-----CCCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS------SHH
T ss_pred             --eCCCCEEEEEEEeeeecCCCcccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCC------CHH
Confidence              44678999999999765533  34568999999999999999999999999999999999999999876      477


Q ss_pred             HHHHHHHHHhCCCCHHhhhCCCCcc-chhcccchhhhhhhcccCchhHHhhhhc-----CCChhhHHHHHHHHhhccccC
Q 013220          326 DHLALMMELIGKMPRKIAIGGAQSK-DYFDRHGDLKRIRRLKFWSLDRLLVDKY-----RFSETDAREFAEFLVPLLDFT  399 (447)
Q Consensus       326 ~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~ll~~~L~~d  399 (447)
                      .++..+++.+|..+..+........ .+.......      ....+...+....     ......+.++.+||.+||+.|
T Consensus       270 ~~~~~i~~~lg~p~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~d  343 (464)
T 3ttj_A          270 DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY------AGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVID  343 (464)
T ss_dssp             HHHHHHHHHHCSCCHHHHTTSCHHHHHHHTTSCCC------CCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHhcCCCCHHHHHHcchhhhhHhhccccc------CCCChHHhCcccccccccccccccCHHHHHHHHHHcCCC
Confidence            8899999999998877653332111 111111000      0001111111000     011123678999999999999


Q ss_pred             CCCCCChHHHhcCcccccccC
Q 013220          400 PEKRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       400 P~kRpta~elL~hp~f~~~~~  420 (447)
                      |++|||++|+|+||||+....
T Consensus       344 P~~R~ta~e~L~Hp~~~~~~~  364 (464)
T 3ttj_A          344 PAKRISVDDALQHPYINVWYD  364 (464)
T ss_dssp             TTTSCCHHHHHTSTTTGGGCC
T ss_pred             hhhCCCHHHHhcChhhhhccC
Confidence            999999999999999986543

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=5e-48  Score=379.44  Aligned_cols=247  Identities=19%  Similarity=0.303  Sum_probs=200.8

Q ss_pred             CceEEEEeecccCceEEEEEEeC-----CCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDT-----RTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~-----~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      ..+++.++||+|+||+||+|+..     .+++.||||+++...  ...+.+.+|+++++.+      +|||||++++++.
T Consensus        26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l------~HpNIV~l~g~~~   99 (308)
T 4gt4_A           26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARL------QHPNVVCLLGVVT   99 (308)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHC------CCTTBCCEEEEEC
T ss_pred             HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhC------CCCCCCCcceEEE
Confidence            67899999999999999999853     467899999986543  3346799999999999      8999999999987


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhc--------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCC
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSR--------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPE  173 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~--------------~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~  173 (447)
                      ..    ..++|||||| +|+|.+++....              ...+++..+..++.||+.||+|||++ +||||||||+
T Consensus       100 ~~----~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~-~iiHRDLK~~  174 (308)
T 4gt4_A          100 KD----QPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH-HVVHKDLATR  174 (308)
T ss_dssp             SS----SSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGG
T ss_pred             EC----CEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC-CCCCCCcccc
Confidence            53    6789999999 899999885431              23488999999999999999999997 9999999999


Q ss_pred             CeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCccc
Q 013220          174 NILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDM  253 (447)
Q Consensus       174 Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (447)
                      |||+                                                                        +.++
T Consensus       175 NILl------------------------------------------------------------------------~~~~  182 (308)
T 4gt4_A          175 NVLV------------------------------------------------------------------------YDKL  182 (308)
T ss_dssp             GEEE------------------------------------------------------------------------CGGG
T ss_pred             ceEE------------------------------------------------------------------------CCCC
Confidence            9999                                                                        4467


Q ss_pred             ceeEeecCcccccccc-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHH
Q 013220          254 RCKVVDFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDH  327 (447)
Q Consensus       254 ~~kL~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~  327 (447)
                      .+||+|||+|+.....     ....+||+.|+|||++.+..|+.++|||||||++|+|++ |..||.+.+      ....
T Consensus       183 ~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~------~~~~  256 (308)
T 4gt4_A          183 NVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS------NQDV  256 (308)
T ss_dssp             CEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCC------HHHH
T ss_pred             CEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCC------HHHH
Confidence            8999999999754321     234578999999999999999999999999999999998 899997652      2222


Q ss_pred             HHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChH
Q 013220          328 LALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQ  407 (447)
Q Consensus       328 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~  407 (447)
                      +..+..  |                                       ...+.+..++..+.+|+.+||+.||++|||++
T Consensus       257 ~~~i~~--~---------------------------------------~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~  295 (308)
T 4gt4_A          257 VEMIRN--R---------------------------------------QVLPCPDDCPAWVYALMIECWNEFPSRRPRFK  295 (308)
T ss_dssp             HHHHHT--T---------------------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             HHHHHc--C---------------------------------------CCCCCcccchHHHHHHHHHHcCCChhHCcCHH
Confidence            222110  0                                       01124556677899999999999999999999


Q ss_pred             HHhcC
Q 013220          408 QCLQH  412 (447)
Q Consensus       408 elL~h  412 (447)
                      |++++
T Consensus       296 ei~~~  300 (308)
T 4gt4_A          296 DIHSR  300 (308)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99875

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=5.8e-48  Score=378.19  Aligned_cols=247  Identities=24%  Similarity=0.409  Sum_probs=194.3

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      .+++++.++||+|+||+||+|++..   .||||+++..   ....+.+.+|+++++.+      +|||||++++++..  
T Consensus        35 ~~~l~l~~~iG~G~fG~Vy~~~~~~---~vAvK~~~~~~~~~~~~~~f~~E~~il~~l------~HpNIV~l~g~~~~--  103 (307)
T 3omv_A           35 ASEVMLSTRIGSGSFGTVYKGKWHG---DVAVKILKVVDPTPEQFQAFRNEVAVLRKT------RHVNILLFMGYMTK--  103 (307)
T ss_dssp             TTSCCEEEECCCCSSSEEEEEESSS---EEEEEECCCSSCCHHHHHHHHHHHHHHTTC------CCTTBCCEEEEECS--
T ss_pred             HHHeEEeeEEeeCCCcEEEEEEECC---cEEEEEEEecCCCHHHHHHHHHHHHHHHhC------CCCCEeeEEEEEEC--
Confidence            4789999999999999999998643   5899987632   34456899999999999      89999999998753  


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                         +.++|||||| +++|.+++.... ..+++..+..++.|++.||+|||++ +||||||||+|||+             
T Consensus       104 ---~~~~iVmEy~~gGsL~~~l~~~~-~~l~~~~~~~i~~qia~gL~yLH~~-~IiHRDlKp~NILl-------------  165 (307)
T 3omv_A          104 ---DNLAIVTQWCEGSSLYKHLHVQE-TKFQMFQLIDIARQTAQGMDYLHAK-NIIHRDMKSNNIFL-------------  165 (307)
T ss_dssp             ---SSCEEEEECCSSCBHHHHHHTSC-CCCCHHHHHHHHHHHHHHHHHHHHT-TCBCSCCCSSSEEE-------------
T ss_pred             ---CeEEEEEEcCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CccCCccCHHHEEE-------------
Confidence               3589999999 899999886433 4599999999999999999999997 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc--
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--  268 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~--  268 (447)
                                                                                 +.++.+||+|||+|.....  
T Consensus       166 -----------------------------------------------------------~~~~~~Ki~DFGla~~~~~~~  186 (307)
T 3omv_A          166 -----------------------------------------------------------HEGLTVKIGDFGLATVKSRWS  186 (307)
T ss_dssp             -----------------------------------------------------------ETTEEEEECCCSSCBC-----
T ss_pred             -----------------------------------------------------------CCCCcEEEeeccCceecccCC
Confidence                                                                       4467899999999975432  


Q ss_pred             ---ccccCCCCCCccChHHhhc---CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh
Q 013220          269 ---QFAEEIQTRQYRAPEVILR---AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  342 (447)
Q Consensus       269 ---~~~~~~gt~~y~aPE~l~~---~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (447)
                         .....+||+.|+|||++.+   .+|+.++|||||||++|+|++|+.||.+.+      ....+..+... +..+.. 
T Consensus       187 ~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~------~~~~~~~~~~~-~~~~p~-  258 (307)
T 3omv_A          187 GSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHIN------NRDQIIFMVGR-GYASPD-  258 (307)
T ss_dssp             -------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCC------CHHHHHHHHHT-TCCCCC-
T ss_pred             cceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCC------hHHHHHHHHhc-CCCCCC-
Confidence               2234589999999999974   368999999999999999999999997652      22222222211 110000 


Q ss_pred             hhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                        ....+..+++++.+||.+||+.||++|||++|+++
T Consensus       259 ----------------------------------~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~  293 (307)
T 3omv_A          259 ----------------------------------LSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILS  293 (307)
T ss_dssp             ----------------------------------STTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHH
T ss_pred             ----------------------------------cccccccchHHHHHHHHHHcCCCHhHCcCHHHHHH
Confidence                                              01134456778999999999999999999998754

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=6.9e-47  Score=375.86  Aligned_cols=331  Identities=28%  Similarity=0.466  Sum_probs=254.9

Q ss_pred             CCCCccccccCccccCCceEEEEeecccCceEEEEEEeCCCC-eEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcc
Q 013220           20 RKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTS-SYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEK   98 (447)
Q Consensus        20 ~~~~~~~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~-~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~   98 (447)
                      ..++++++.+|+.+. ++|++.+.||+|+||+||+|++..++ ..||+|+++......+.+.+|+++++.+.+.+...+.
T Consensus         4 ~~~~~~~~~~g~~~~-~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~   82 (355)
T 2eu9_A            4 DKEGHLVCRIGDWLQ-ERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKF   82 (355)
T ss_dssp             CTTSCBCCCTTCEET-TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHCTTSCS
T ss_pred             ccCCCcccccCceec-ccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccccchhHHHHHHHHHHHHhhcCCCCce
Confidence            456788999999997 79999999999999999999998776 7999999987766677889999999999887766777


Q ss_pred             eeeeecccccccCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEee
Q 013220           99 CVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV  178 (447)
Q Consensus        99 ~Iv~~~~~~~~~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~  178 (447)
                      +++.+++++...    .+.++||||+++++.+.+.......+++..+..++.||+.||+|||++ ||+||||||+||++.
T Consensus        83 ~~~~~~~~~~~~----~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~-~ivH~Dlkp~NIll~  157 (355)
T 2eu9_A           83 LCVLMSDWFNFH----GHMCIAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHEN-QLTHTDLKPENILFV  157 (355)
T ss_dssp             CBCCEEEEEEET----TEEEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTT-TEECCCCCGGGEEES
T ss_pred             eEEEeeeeeeeC----CeEEEEEeccCCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEEe
Confidence            799998888754    689999999988888887765545699999999999999999999997 999999999999994


Q ss_pred             ecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEe
Q 013220          179 STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVV  258 (447)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~  258 (447)
                      .....   ..                                                ..  ..............++|+
T Consensus       158 ~~~~~---~~------------------------------------------------~~--~~~~~~~~~~~~~~~kl~  184 (355)
T 2eu9_A          158 NSEFE---TL------------------------------------------------YN--EHKSCEEKSVKNTSIRVA  184 (355)
T ss_dssp             CCCEE---EE------------------------------------------------EC--CC-CCCEEEESCCCEEEC
T ss_pred             ccccc---cc------------------------------------------------cc--ccccccccccCCCcEEEe
Confidence            31000   00                                                00  000000011345679999


Q ss_pred             ecCcccccccccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCC
Q 013220          259 DFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKM  338 (447)
Q Consensus       259 Dfg~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~  338 (447)
                      |||++..........+||+.|+|||++.+..++.++|||||||++|+|++|..||...      .....+..+....+..
T Consensus       185 Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~------~~~~~~~~~~~~~~~~  258 (355)
T 2eu9_A          185 DFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTH------ENREHLVMMEKILGPI  258 (355)
T ss_dssp             CCTTCEETTSCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCCC
T ss_pred             ecCccccccccccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHcCCC
Confidence            9999987666666778999999999999989999999999999999999999999865      4667788888999999


Q ss_pred             CHHhhhCCCCccchhcccch------hhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          339 PRKIAIGGAQSKDYFDRHGD------LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                      |..+.........++.....      ...........    +..........+..+.+||.+||+.||++|||++|+|+|
T Consensus       259 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~h  334 (355)
T 2eu9_A          259 PSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKP----LKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALLH  334 (355)
T ss_dssp             CHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCC----GGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred             cHHHhhhccchhhhcccccccccccchhccccccCCc----ccccccccchhHHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence            98876554433322211110      00000000000    011112334557789999999999999999999999999


Q ss_pred             ccccccc
Q 013220          413 PWLSLRN  419 (447)
Q Consensus       413 p~f~~~~  419 (447)
                      |||+...
T Consensus       335 p~f~~~~  341 (355)
T 2eu9_A          335 PFFAGLT  341 (355)
T ss_dssp             GGGGGCC
T ss_pred             hhhcCCC
Confidence            9999764

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=3.1e-47  Score=380.38  Aligned_cols=251  Identities=25%  Similarity=0.362  Sum_probs=203.2

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCC-----CeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRT-----SSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~-----~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      .++|++.++||+|+||+||+|++..+     ++.||||.++...  ...+.+.+|+++|..+.     +|+|||++++++
T Consensus        63 ~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~-----hhpnIV~l~g~~  137 (353)
T 4ase_A           63 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIG-----HHLNVVNLLGAC  137 (353)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHC-----CCTTBCCEEEEE
T ss_pred             HHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcC-----CCCcEEEEEEEE
Confidence            47899999999999999999986543     4689999887543  33567899999999995     568999999988


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhc--------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCC
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSR--------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKP  172 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~--------------~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp  172 (447)
                      ...   +..++|||||| +|+|.+++....              ...+++..+..++.||+.||+|||++ +||||||||
T Consensus       138 ~~~---~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~-~iiHRDLK~  213 (353)
T 4ase_A          138 TKP---GGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR-KCIHRDLAA  213 (353)
T ss_dssp             CCT---TSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSG
T ss_pred             Eec---CCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC-CeecCccCc
Confidence            653   35789999999 899999986532              13478899999999999999999997 999999999


Q ss_pred             CCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcc
Q 013220          173 ENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGID  252 (447)
Q Consensus       173 ~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (447)
                      +|||+                                                                        +.+
T Consensus       214 ~NILl------------------------------------------------------------------------~~~  221 (353)
T 4ase_A          214 RNILL------------------------------------------------------------------------SEK  221 (353)
T ss_dssp             GGEEE------------------------------------------------------------------------CGG
T ss_pred             cceee------------------------------------------------------------------------CCC
Confidence            99999                                                                        446


Q ss_pred             cceeEeecCcccccccc-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchH
Q 013220          253 MRCKVVDFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDED  326 (447)
Q Consensus       253 ~~~kL~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~  326 (447)
                      +.+||+|||+|+.....     ....+||+.|+|||++.+..|+.++|||||||++|+|++ |..||.+.+     ....
T Consensus       222 ~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~-----~~~~  296 (353)
T 4ase_A          222 NVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK-----IDEE  296 (353)
T ss_dssp             GCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC-----CSHH
T ss_pred             CCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCC-----HHHH
Confidence            78999999999754322     123468999999999999999999999999999999998 999997653     1111


Q ss_pred             HHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCCh
Q 013220          327 HLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA  406 (447)
Q Consensus       327 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta  406 (447)
                      ....+.+  |                                       .++..|...++++.+||.+||+.||++|||+
T Consensus       297 ~~~~i~~--g---------------------------------------~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~  335 (353)
T 4ase_A          297 FCRRLKE--G---------------------------------------TRMRAPDYTTPEMYQTMLDCWHGEPSQRPTF  335 (353)
T ss_dssp             HHHHHHH--T---------------------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             HHHHHHc--C---------------------------------------CCCCCCccCCHHHHHHHHHHcCcChhHCcCH
Confidence            1111111  0                                       1123455567789999999999999999999


Q ss_pred             HHHhcC
Q 013220          407 QQCLQH  412 (447)
Q Consensus       407 ~elL~h  412 (447)
                      +|+++|
T Consensus       336 ~eil~~  341 (353)
T 4ase_A          336 SELVEH  341 (353)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999998

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=2e-46  Score=368.30  Aligned_cols=295  Identities=26%  Similarity=0.413  Sum_probs=220.8

Q ss_pred             CCCccccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH---hHHHHHHHHHHHHHhhcCCCCCc
Q 013220           21 KGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ---FAQAALHEIEVLSAVADGDPSNE   97 (447)
Q Consensus        21 ~~~~~~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~---~~~~~~~E~~~l~~l~~~~~~~~   97 (447)
                      .+++.....++.+. ++|++.++||+|+||+||+|++. +++.||+|++.....   ....+.+|+++++.+      +|
T Consensus         7 ~~~~~~~~~~q~l~-~~y~~~~~lG~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l------~h   78 (311)
T 3niz_A            7 HSSGRENLYFQGLM-EKYQKLEKVGEGTYGVVYKAKDS-QGRIVALKRIRLDAEDEGIPSTAIREISLLKEL------HH   78 (311)
T ss_dssp             --------CEECSS-CEEEEEEEEEECSSCEEEEEEET-TSCEEEEEEEC------CHHHHHHHHHHHHHHC------CC
T ss_pred             ccccccceeecchH-hhhHhhhhccCCCCeEEEEEEEC-CCCEEEEEEEecccccchhhHHHHHHHHHHHHc------CC
Confidence            45566666677775 79999999999999999999985 589999998875432   245788999999999      78


Q ss_pred             ceeeeecccccccCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEe
Q 013220           98 KCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL  177 (447)
Q Consensus        98 ~~Iv~~~~~~~~~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill  177 (447)
                      +||+++++++..    ....++||||+++++.+.+.... ..+++..+..++.|++.||+|||++ ||+||||||+||++
T Consensus        79 p~iv~~~~~~~~----~~~~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~-~ivH~Dikp~NIl~  152 (311)
T 3niz_A           79 PNIVSLIDVIHS----ERCLTLVFEFMEKDLKKVLDENK-TGLQDSQIKIYLYQLLRGVAHCHQH-RILHRDLKPQNLLI  152 (311)
T ss_dssp             TTBCCEEEEECC----SSCEEEEEECCSEEHHHHHHTCT-TCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEE
T ss_pred             CCEeeeeeEEcc----CCEEEEEEcCCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCchHhEEE
Confidence            999999999874    36899999999878888876533 4589999999999999999999996 99999999999999


Q ss_pred             eecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeE
Q 013220          178 VSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKV  257 (447)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL  257 (447)
                                                                                              +.+..+||
T Consensus       153 ------------------------------------------------------------------------~~~~~~kl  160 (311)
T 3niz_A          153 ------------------------------------------------------------------------NSDGALKL  160 (311)
T ss_dssp             ------------------------------------------------------------------------CTTCCEEE
T ss_pred             ------------------------------------------------------------------------CCCCCEEE
Confidence                                                                                    34567999


Q ss_pred             eecCccccccc---ccccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHH
Q 013220          258 VDFGNACRANK---QFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMME  333 (447)
Q Consensus       258 ~Dfg~a~~~~~---~~~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~  333 (447)
                      +|||++.....   .....++|+.|+|||++.+ ..++.++|||||||++|+|++|..||...      .....+..+..
T Consensus       161 ~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~------~~~~~~~~i~~  234 (311)
T 3niz_A          161 ADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGV------TDDDQLPKIFS  234 (311)
T ss_dssp             CCCTTCEETTSCCC---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCS------STTTHHHHHHH
T ss_pred             ccCcCceecCCCcccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCC------ChHHHHHHHHH
Confidence            99999976542   2334578999999999987 45899999999999999999999999876      35667788888


Q ss_pred             HhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCc
Q 013220          334 LIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP  413 (447)
Q Consensus       334 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp  413 (447)
                      .++..+............+.....     .......+..       .....++++.+||.+||+.||++|||++|+|+||
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-------~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp  302 (311)
T 3niz_A          235 ILGTPNPREWPQVQELPLWKQRTF-----QVFEKKPWSS-------IIPGFCQEGIDLLSNMLCFDPNKRISARDAMNHP  302 (311)
T ss_dssp             HHCCCCTTTSGGGTTSHHHHSCCC-----CCCCCCCHHH-------HSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHTSG
T ss_pred             HHCCCChHHhhhhhccchhhhccc-----ccccCCcHHH-------hCcccCHHHHHHHHHHcCCChhHCCCHHHHhcCc
Confidence            887766432111111100000000     0000000111       1223456889999999999999999999999999


Q ss_pred             cccccc
Q 013220          414 WLSLRN  419 (447)
Q Consensus       414 ~f~~~~  419 (447)
                      ||++.+
T Consensus       303 ~f~~~~  308 (311)
T 3niz_A          303 YFKDLD  308 (311)
T ss_dssp             GGTTSC
T ss_pred             ccccCC
Confidence            999754

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=2.2e-46  Score=366.65  Aligned_cols=293  Identities=28%  Similarity=0.442  Sum_probs=222.5

Q ss_pred             ccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH------HhHHHHHHHHHHHHHhhcCCCCCcceee
Q 013220           28 RVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA------QFAQAALHEIEVLSAVADGDPSNEKCVI  101 (447)
Q Consensus        28 ~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~------~~~~~~~~E~~~l~~l~~~~~~~~~~Iv  101 (447)
                      .+|+++. ++|++.++||+|+||+||+|++..+++.||+|++....      .....+.+|+++++.+...   .|+||+
T Consensus         2 p~g~~~~-~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~---~h~niv   77 (308)
T 3g33_A            2 PLGSMAT-SRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAF---EHPNVV   77 (308)
T ss_dssp             ---------CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHH---CCTTBC
T ss_pred             CCCcccc-cceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhc---CCCCeE
Confidence            3677886 79999999999999999999999999999999876332      1234677888888887532   589999


Q ss_pred             eecccccccCC-CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeec
Q 013220          102 RLIDHFKHAGP-NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVST  180 (447)
Q Consensus       102 ~~~~~~~~~~~-~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~  180 (447)
                      ++++++..... .....++||||++++|.+++.......+++..+..++.|++.||+|||++ ||+||||||+||++   
T Consensus        78 ~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~ivH~Dlkp~Nil~---  153 (308)
T 3g33_A           78 RLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHAN-CIVHRDLKPENILV---  153 (308)
T ss_dssp             CEEEEEEECCSSSEEEEEEEEECCCCBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCTTTEEE---
T ss_pred             EeeeeeeccCCCCceeEEEEehhhhcCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEE---
Confidence            99999876532 22368999999988999998766555599999999999999999999997 99999999999999   


Q ss_pred             CCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeec
Q 013220          181 IDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDF  260 (447)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Df  260 (447)
                                                                                           +....+||+||
T Consensus       154 ---------------------------------------------------------------------~~~~~~kl~Df  164 (308)
T 3g33_A          154 ---------------------------------------------------------------------TSGGTVKLADF  164 (308)
T ss_dssp             ---------------------------------------------------------------------CTTSCEEECSC
T ss_pred             ---------------------------------------------------------------------cCCCCEEEeeC
Confidence                                                                                 34567999999


Q ss_pred             Cccccccc--ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCC
Q 013220          261 GNACRANK--QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKM  338 (447)
Q Consensus       261 g~a~~~~~--~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~  338 (447)
                      |++.....  .....+||+.|+|||++.+..++.++|||||||++|+|++|..||...      .....+..+.+.++..
T Consensus       165 g~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~------~~~~~~~~i~~~~~~~  238 (308)
T 3g33_A          165 GLARIYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGN------SEADQLGKIFDLIGLP  238 (308)
T ss_dssp             SCTTTSTTCCCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCS------SHHHHHHHHHHHHCCC
T ss_pred             ccccccCCCcccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhCCC
Confidence            99975543  234457899999999999999999999999999999999999999876      4777888888888887


Q ss_pred             CHHhhhCCCCcc-chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccc
Q 013220          339 PRKIAIGGAQSK-DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       339 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~  417 (447)
                      +........... ..|.         .........       .....++.+.+||.+||+.||++|||++|+|+||||+.
T Consensus       239 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~-------~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h~~~~~  302 (308)
T 3g33_A          239 PEDDWPRDVSLPRGAFP---------PRGPRPVQS-------VVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSYLHK  302 (308)
T ss_dssp             CTTTSCSSCSSCGGGSC---------CCCCCCHHH-------HSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTSTTC--
T ss_pred             ChhhccchhhccccccC---------CCCCCcHHH-------hCccccHHHHHHHHHHhcCCCccCCCHHHHhcCccccC
Confidence            754321111110 0000         000000111       12234678999999999999999999999999999996


Q ss_pred             cc
Q 013220          418 RN  419 (447)
Q Consensus       418 ~~  419 (447)
                      ..
T Consensus       303 ~~  304 (308)
T 3g33_A          303 DE  304 (308)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=9.6e-47  Score=377.74  Aligned_cols=269  Identities=26%  Similarity=0.396  Sum_probs=209.5

Q ss_pred             CCCCCccccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCC
Q 013220           19 YRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDP   94 (447)
Q Consensus        19 ~~~~~~~~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~   94 (447)
                      ...+...++.....+..++|++.+.||+|+||+||+|++..+++.||+|+++...    .....+..|.++++.+.    
T Consensus         6 ~~~~~~~~~~~~~~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~----   81 (353)
T 3txo_A            6 SKEGNGIGVNSSNRLGIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLAR----   81 (353)
T ss_dssp             -----------------CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTT----
T ss_pred             CcCCCCCCCCCcCCCchhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhcc----
Confidence            3345666777777777789999999999999999999999999999999987643    23456778999998875    


Q ss_pred             CCcceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCC
Q 013220           95 SNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPE  173 (447)
Q Consensus        95 ~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~  173 (447)
                       +|+||++++++|...    ..+|+||||| +++|...+...  ..+++..++.++.||+.||+|||++ ||+||||||+
T Consensus        82 -~hp~Iv~l~~~~~~~----~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-givHrDlkp~  153 (353)
T 3txo_A           82 -NHPFLTQLFCCFQTP----DRLFFVMEFVNGGDLMFHIQKS--RRFDEARARFYAAEIISALMFLHDK-GIIYRDLKLD  153 (353)
T ss_dssp             -TCTTBCCEEEEEECS----SEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCGG
T ss_pred             -CCCceeeEEEEEEeC----CEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CCcccCCCHH
Confidence             799999999998754    6899999999 88999888754  3499999999999999999999996 9999999999


Q ss_pred             CeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCccc
Q 013220          174 NILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDM  253 (447)
Q Consensus       174 Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (447)
                      |||+                                                                        +..+
T Consensus       154 NILl------------------------------------------------------------------------~~~g  161 (353)
T 3txo_A          154 NVLL------------------------------------------------------------------------DHEG  161 (353)
T ss_dssp             GEEE------------------------------------------------------------------------CTTS
T ss_pred             HEEE------------------------------------------------------------------------CCCC
Confidence            9999                                                                        4467


Q ss_pred             ceeEeecCcccccc---cccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHH
Q 013220          254 RCKVVDFGNACRAN---KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLAL  330 (447)
Q Consensus       254 ~~kL~Dfg~a~~~~---~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~  330 (447)
                      .+||+|||++....   ......+||+.|+|||++.+..++.++|||||||++|+|++|..||...+      ...... 
T Consensus       162 ~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~------~~~~~~-  234 (353)
T 3txo_A          162 HCKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAEN------EDDLFE-  234 (353)
T ss_dssp             CEEECCCTTCBCSCC---------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHH-
T ss_pred             CEEEccccceeecccCCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCC------HHHHHH-
Confidence            89999999997532   22344589999999999999889999999999999999999999997653      222222 


Q ss_pred             HHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCCh----
Q 013220          331 MMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA----  406 (447)
Q Consensus       331 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta----  406 (447)
                                                               .+......++...+..+.+||.+||+.||++||++    
T Consensus       235 -----------------------------------------~i~~~~~~~p~~~~~~~~~li~~lL~~dP~~R~~~~~~~  273 (353)
T 3txo_A          235 -----------------------------------------AILNDEVVYPTWLHEDATGILKSFMTKNPTMRLGSLTQG  273 (353)
T ss_dssp             -----------------------------------------HHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSGGGT
T ss_pred             -----------------------------------------HHHcCCCCCCCCCCHHHHHHHHHHhhhCHHHccCCcccC
Confidence                                                     22223333555567789999999999999999998    


Q ss_pred             --HHHhcCccccccc
Q 013220          407 --QQCLQHPWLSLRN  419 (447)
Q Consensus       407 --~elL~hp~f~~~~  419 (447)
                        +|+++||||+..+
T Consensus       274 ~~~~il~hp~f~~~~  288 (353)
T 3txo_A          274 GEHAILRHPFFKEID  288 (353)
T ss_dssp             CTHHHHTSGGGTTCC
T ss_pred             CHHHHhhCCcccCCC
Confidence              8999999999753

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=7.5e-46  Score=375.20  Aligned_cols=299  Identities=27%  Similarity=0.466  Sum_probs=220.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.+.||+|+||+||+|.+..+++.||||++...   ......+.+|+.+++.+.     +|+||+++++++...  
T Consensus         9 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~-----~h~niv~l~~~~~~~--   81 (388)
T 3oz6_A            9 RKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELS-----GHENIVNLLNVLRAD--   81 (388)
T ss_dssp             TTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTT-----TCTTBCCEEEEEECT--
T ss_pred             CceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhcc-----CCCCCCeeeeEEecC--
Confidence            7999999999999999999999999999999987532   344567788999999984     599999999998754  


Q ss_pred             CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          113 NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       113 ~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      +...+|+|||||+++|...+..   ..+++..+..++.||+.||+|||+. ||+||||||+|||+               
T Consensus        82 ~~~~~~lv~e~~~~~L~~~~~~---~~~~~~~~~~i~~qi~~~L~~LH~~-~ivHrDlkp~NIll---------------  142 (388)
T 3oz6_A           82 NDRDVYLVFDYMETDLHAVIRA---NILEPVHKQYVVYQLIKVIKYLHSG-GLLHRDMKPSNILL---------------  142 (388)
T ss_dssp             TSSCEEEEEECCSEEHHHHHHH---TCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEE---------------
T ss_pred             CCCEEEEEecccCcCHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhC-CEEeCCCCHHHeEE---------------
Confidence            4457999999998899888865   3489999999999999999999996 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc----
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----  268 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~----  268 (447)
                                                                               +.++.+||+|||++.....    
T Consensus       143 ---------------------------------------------------------~~~~~~kl~DFG~a~~~~~~~~~  165 (388)
T 3oz6_A          143 ---------------------------------------------------------NAECHVKVADFGLSRSFVNIRRV  165 (388)
T ss_dssp             ---------------------------------------------------------CTTCCEEECCCTTCEESSSCCCC
T ss_pred             ---------------------------------------------------------cCCCCEEecCCcccccccccccc
Confidence                                                                     4467899999999965321    


Q ss_pred             --------------------ccccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHH
Q 013220          269 --------------------QFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDH  327 (447)
Q Consensus       269 --------------------~~~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~  327 (447)
                                          ..+..+||++|+|||++.+ ..++.++|||||||++|+|++|..||.+.      ....+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~------~~~~~  239 (388)
T 3oz6_A          166 TNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGS------STMNQ  239 (388)
T ss_dssp             CCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHH
T ss_pred             cccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCC------CHHHH
Confidence                                1234579999999999987 57899999999999999999999999876      47788


Q ss_pred             HHHHHHHhCCCCHHhhhCCCCc--cchhcccchhhhhhhcccC----chhHHhhhhcCCChhhHHHHHHHHhhccccCCC
Q 013220          328 LALMMELIGKMPRKIAIGGAQS--KDYFDRHGDLKRIRRLKFW----SLDRLLVDKYRFSETDAREFAEFLVPLLDFTPE  401 (447)
Q Consensus       328 ~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~  401 (447)
                      +..+...+|.++..........  ..++...............    .+...+.. .......++.+.+||.+||+.||+
T Consensus       240 ~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dll~~~L~~dP~  318 (388)
T 3oz6_A          240 LERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLK-INPKADCNEEALDLLDKLLQFNPN  318 (388)
T ss_dssp             HHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHH-HCTTCCCCHHHHHHHHHHCCSSGG
T ss_pred             HHHHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhccc-ccccccCCHHHHHHHHHhhccCcc
Confidence            8888899998887654322211  1111000000000000000    11111111 111224467899999999999999


Q ss_pred             CCCChHHHhcCcccccccCCccc
Q 013220          402 KRPTAQQCLQHPWLSLRNSTRDE  424 (447)
Q Consensus       402 kRpta~elL~hp~f~~~~~~~~~  424 (447)
                      +|||++|+|+||||+.......+
T Consensus       319 ~R~t~~e~l~Hp~~~~~~~~~~~  341 (388)
T 3oz6_A          319 KRISANDALKHPFVSIFHNPNEE  341 (388)
T ss_dssp             GSCCHHHHTTSTTTTTTCCGGGC
T ss_pred             cCCCHHHHhCCHHHHHhcCCccC
Confidence            99999999999999876654443

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=6.4e-46  Score=368.06  Aligned_cols=251  Identities=25%  Similarity=0.457  Sum_probs=211.1

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.+.||+|+||.||+|++..+++.||||++...   ....+.+.+|+++++.+      +|+||+++++++..   
T Consensus        15 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l------~hpnIv~l~~~~~~---   85 (328)
T 3fe3_A           15 GNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKIL------NHPNIVKLFEVIET---   85 (328)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHC------CCTTBCCEEEEEEC---
T ss_pred             CCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhC------CCCCEeeEEEEEEE---
Confidence            7899999999999999999999999999999988654   23456788999999999      78999999999874   


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                       ....|+||||+ +++|.+.+...  ..+++..+..++.|++.||+|||++ ||+||||||+||++              
T Consensus        86 -~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~al~~lH~~-~ivHrDlkp~NIll--------------  147 (328)
T 3fe3_A           86 -EKTLYLIMEYASGGEVFDYLVAH--GRMKEKEARSKFRQIVSAVQYCHQK-RIVHRDLKAENLLL--------------  147 (328)
T ss_dssp             -SSEEEEEECCCTTCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEE--------------
T ss_pred             -CCEEEEEEECCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CEeccCCCHHHEEE--------------
Confidence             36899999999 88999988654  3499999999999999999999997 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc--cc
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQ  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~--~~  269 (447)
                                                                                +.++.+||+|||++....  ..
T Consensus       148 ----------------------------------------------------------~~~~~~kl~DFG~a~~~~~~~~  169 (328)
T 3fe3_A          148 ----------------------------------------------------------DADMNIKIADFGFSNEFTVGGK  169 (328)
T ss_dssp             ----------------------------------------------------------CTTSCEEECSTTCCGGGSSSCG
T ss_pred             ----------------------------------------------------------cCCCCEEEeeccCceecCCCCc
Confidence                                                                      446789999999997543  33


Q ss_pred             cccCCCCCCccChHHhhcCCCC-ccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          270 FAEEIQTRQYRAPEVILRAGYS-FSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~~~-~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      ....+||+.|+|||++.+..+. .++|||||||++|+|++|..||.+.+      ......                   
T Consensus       170 ~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~------~~~~~~-------------------  224 (328)
T 3fe3_A          170 LDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQN------LKELRE-------------------  224 (328)
T ss_dssp             GGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHH-------------------
T ss_pred             cccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCC------HHHHHH-------------------
Confidence            4456899999999999988775 89999999999999999999997652      111111                   


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                             .+......++...+..+.+||.+||+.||.+|||++|+|+||||+...
T Consensus       225 -----------------------~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~t~~eil~h~~~~~~~  272 (328)
T 3fe3_A          225 -----------------------RVLRGKYRIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMKDRWINAGH  272 (328)
T ss_dssp             -----------------------HHHHCCCCCCTTSCHHHHHHHHHHCCSSTTTSCCHHHHTTCTTTTTTC
T ss_pred             -----------------------HHHhCCCCCCCCCCHHHHHHHHHHCCCChhHCcCHHHHhcCHhhcCCC
Confidence                                   112222334455677899999999999999999999999999998654

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=1.5e-45  Score=357.98  Aligned_cols=281  Identities=28%  Similarity=0.437  Sum_probs=220.3

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.++||+|+||+||+|++..+++.||+|++....   .....+.+|+++++.+      .|+||+++++++...  
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~~--   73 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKEL------KHKNIVRLHDVLHSD--   73 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTC------CCTTBCCEEEEEEET--
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcC------CCCCEeeEEeEEEeC--
Confidence            58999999999999999999999999999999886432   3346778899999998      789999999998753  


Q ss_pred             CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          113 NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       113 ~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                        ...++||||+++++.+.+.... ..+++..+..++.|++.||+|||++ ||+||||||+||++               
T Consensus        74 --~~~~lv~e~~~~~l~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lH~~-~ivH~dikp~Nil~---------------  134 (292)
T 3o0g_A           74 --KKLTLVFEFCDQDLKKYFDSCN-GDLDPEIVKSFLFQLLKGLGFCHSR-NVLHRDLKPQNLLI---------------  134 (292)
T ss_dssp             --TEEEEEEECCSEEHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEE---------------
T ss_pred             --CEEEEEEecCCCCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEE---------------
Confidence              6899999999778877765433 4599999999999999999999997 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---  269 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---  269 (447)
                                                                               +.++.+||+|||.+......   
T Consensus       135 ---------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~  157 (292)
T 3o0g_A          135 ---------------------------------------------------------NRNGELKLANFGLARAFGIPVRC  157 (292)
T ss_dssp             ---------------------------------------------------------CTTSCEEECCCTTCEECCSCCSC
T ss_pred             ---------------------------------------------------------cCCCCEEEeecccceecCCcccc
Confidence                                                                     34567999999999765432   


Q ss_pred             cccCCCCCCccChHHhhcCC-CCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          270 FAEEIQTRQYRAPEVILRAG-YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~-~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      .....||+.|+|||++.+.. ++.++|||||||++|+|++|..||....     .....+..+.+..+..+.........
T Consensus       158 ~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~  232 (292)
T 3o0g_A          158 YSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGN-----DVDDQLKRIFRLLGTPTEEQWPSMTK  232 (292)
T ss_dssp             CCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCS-----SHHHHHHHHHHHHCCCCTTTCTTGGG
T ss_pred             ccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCC-----CHHHHHHHHHHHhCCCChhhhhhhcc
Confidence            23457899999999998765 7999999999999999999888865442     46677788888888776543211111


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                      ...+          .......   ............+..+.+||.+||+.||++|||++|+|+||||++.
T Consensus       233 ~~~~----------~~~~~~~---~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~  289 (292)
T 3o0g_A          233 LPDY----------KPYPMYP---ATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFSDF  289 (292)
T ss_dssp             STTC----------CCCCCCC---TTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTC
T ss_pred             cccc----------ccccccc---CCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhcCcccccC
Confidence            1000          0000000   0000111233457789999999999999999999999999999864

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=6.7e-46  Score=373.61  Aligned_cols=309  Identities=29%  Similarity=0.458  Sum_probs=228.3

Q ss_pred             CCCCCCCccccccCccc--cCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhc
Q 013220           17 DSYRKGGYHAVRVGDLF--NGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVAD   91 (447)
Q Consensus        17 ~~~~~~~~~~~~~g~~~--~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~   91 (447)
                      ..++.++|+++.+|+..  ..++|++.+.||+|+||+||+|++..+++.||||++...   ......+.+|+++++.+  
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l--   81 (371)
T 2xrw_A            4 RSKRDNNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCV--   81 (371)
T ss_dssp             SGGGGGGEEEEEETTEEEEEETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHC--
T ss_pred             cccccCcceEeecCCcccchhhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhc--
Confidence            34566789999999832  137999999999999999999999999999999987643   23456788999999999  


Q ss_pred             CCCCCcceeeeecccccccC--CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCccccc
Q 013220           92 GDPSNEKCVIRLIDHFKHAG--PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTD  169 (447)
Q Consensus        92 ~~~~~~~~Iv~~~~~~~~~~--~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~D  169 (447)
                          .|+||+++++++....  ......|+||||++++|.+.+.    ..+++..+..++.||+.||+|||++ ||+|||
T Consensus        82 ----~hpniv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~----~~~~~~~~~~i~~qi~~al~~lH~~-~ivH~D  152 (371)
T 2xrw_A           82 ----NHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQ----MELDHERMSYLLYQMLCGIKHLHSA-GIIHRD  152 (371)
T ss_dssp             ----CCTTBCCEEEEECSCCSTTTCCEEEEEEECCSEEHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSC
T ss_pred             ----CCCCccceEEeeccccccccccceEEEEEcCCCCHHHHHh----hccCHHHHHHHHHHHHHHHHHHHHC-Ceeccc
Confidence                7899999999987643  2335899999999888888775    3488999999999999999999997 999999


Q ss_pred             CCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCC
Q 013220          170 LKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLD  249 (447)
Q Consensus       170 ikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (447)
                      |||+||++                                                                        
T Consensus       153 lkp~NIl~------------------------------------------------------------------------  160 (371)
T 2xrw_A          153 LKPSNIVV------------------------------------------------------------------------  160 (371)
T ss_dssp             CCGGGEEE------------------------------------------------------------------------
T ss_pred             CCHHHEEE------------------------------------------------------------------------
Confidence            99999999                                                                        


Q ss_pred             CcccceeEeecCcccccccc--cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHH
Q 013220          250 GIDMRCKVVDFGNACRANKQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDH  327 (447)
Q Consensus       250 ~~~~~~kL~Dfg~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~  327 (447)
                      +.++.+||+|||++......  ....+||+.|+|||++.+..++.++|||||||++|+|++|..||.+.      +....
T Consensus       161 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~------~~~~~  234 (371)
T 2xrw_A          161 KSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGT------DHIDQ  234 (371)
T ss_dssp             CTTSCEEECCCCC----------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS------SHHHH
T ss_pred             cCCCCEEEEEeecccccccccccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC------CHHHH
Confidence            34567999999999765433  34457899999999999989999999999999999999999999876      35666


Q ss_pred             HHHHHHHhCCCCHHhhhCCCCccchh-cccchhhhhhhcccCchhHHhhhhc-----CCChhhHHHHHHHHhhccccCCC
Q 013220          328 LALMMELIGKMPRKIAIGGAQSKDYF-DRHGDLKRIRRLKFWSLDRLLVDKY-----RFSETDAREFAEFLVPLLDFTPE  401 (447)
Q Consensus       328 ~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~ll~~~L~~dP~  401 (447)
                      +..+.+.+|.....+..........+ .....      .....+........     ......+..+.+||.+||+.||+
T Consensus       235 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~  308 (371)
T 2xrw_A          235 WNKVIEQLGTPCPEFMKKLQPTVRTYVENRPK------YAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDAS  308 (371)
T ss_dssp             HHHHHC-CCCCCHHHHTTSCHHHHHHHHSSCC------CCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGG
T ss_pred             HHHHHHHhCCCCHHHHHHhhhHHHHHHhhCcc------ccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChh
Confidence            77777777777665543222111100 00000      00001111111000     01123467899999999999999


Q ss_pred             CCCChHHHhcCcccccccC
Q 013220          402 KRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       402 kRpta~elL~hp~f~~~~~  420 (447)
                      +|||++|+|+||||+....
T Consensus       309 ~R~t~~e~l~hp~~~~~~~  327 (371)
T 2xrw_A          309 KRISVDEALQHPYINVWYD  327 (371)
T ss_dssp             GSCCHHHHHHSHHHHTTCC
T ss_pred             hCCCHHHHhCCcchhhhcC
Confidence            9999999999999986543

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=5.8e-46  Score=364.40  Aligned_cols=258  Identities=20%  Similarity=0.228  Sum_probs=190.0

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      .+|.+.++||+|+||+||+|++  +++.||||++..+.........|+..+..+      +|||||++++++........
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~--~g~~VAvK~l~~~~~~~~~~e~Ei~~~~~l------~HpNIv~l~g~~~~~~~~~~   74 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSREERSWFREAEIYQTVML------RHENILGFIAADNKDNGTWT   74 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEE--TTEEEEEEEECGGGHHHHHHHHHHHTSTTC------CCTTBCCEEEEEEEECSSSE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE--CCEEEEEEEECccchhhHHHHHHHHHHhcC------CCCCCCcEEEEEEecCCCce
Confidence            5799999999999999999987  588999999876654332233344444445      89999999999987654556


Q ss_pred             eEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhh-------CCcccccCCCCCeEeeecCCCCCCc
Q 013220          116 HLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRE-------LGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       116 ~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~-------~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                      .+||||||| +++|.+++..   ..++++.+..++.|++.||+|||++       .+||||||||+|||+          
T Consensus        75 ~~~lV~Ey~~~gsL~~~l~~---~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl----------  141 (303)
T 3hmm_A           75 QLWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILV----------  141 (303)
T ss_dssp             EEEEEEECCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEE----------
T ss_pred             EEEEEecCCCCCcHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEE----------
Confidence            899999999 8999999864   3488999999999999999999973       289999999999999          


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                    +.++.+||+|||+|....
T Consensus       142 --------------------------------------------------------------~~~~~~Ki~DFGla~~~~  159 (303)
T 3hmm_A          142 --------------------------------------------------------------KKNGTCCIADLGLAVRHD  159 (303)
T ss_dssp             --------------------------------------------------------------CTTSCEEECCCTTCEEEE
T ss_pred             --------------------------------------------------------------CCCCCEEEEeCCCCcccc
Confidence                                                                          456789999999997543


Q ss_pred             cc-------cccCCCCCCccChHHhhcC------CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCC-----CchHHHH
Q 013220          268 KQ-------FAEEIQTRQYRAPEVILRA------GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFC-----EDEDHLA  329 (447)
Q Consensus       268 ~~-------~~~~~gt~~y~aPE~l~~~------~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~-----~~~~~~~  329 (447)
                      ..       ....+||+.|+|||++.+.      .++.++|||||||++|+|++|..||.........     .......
T Consensus       160 ~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~  239 (303)
T 3hmm_A          160 SATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVE  239 (303)
T ss_dssp             TTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHH
T ss_pred             CCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHH
Confidence            22       1234799999999999764      3678999999999999999998887654321110     0000011


Q ss_pred             HHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCC-----ChhhHHHHHHHHhhccccCCCCCC
Q 013220          330 LMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRF-----SETDAREFAEFLVPLLDFTPEKRP  404 (447)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~ll~~~L~~dP~kRp  404 (447)
                      .+.+.+-...                                    .++.+     +.+.++.+.+|+.+||+.||++||
T Consensus       240 ~~~~~~~~~~------------------------------------~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RP  283 (303)
T 3hmm_A          240 EMRKVVCEQK------------------------------------LRPNIPNRWQSCEALRVMAKIMRECWYANGAARL  283 (303)
T ss_dssp             HHHHHHTTSC------------------------------------CCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSC
T ss_pred             HHHHHHhccc------------------------------------CCCCCCccccchHHHHHHHHHHHHHcccCHhHCc
Confidence            1111100000                                    00111     123466889999999999999999


Q ss_pred             ChHHHhcC
Q 013220          405 TAQQCLQH  412 (447)
Q Consensus       405 ta~elL~h  412 (447)
                      |++|+++.
T Consensus       284 t~~ei~~~  291 (303)
T 3hmm_A          284 TALRIKKT  291 (303)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            99999864

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6.3e-45  Score=366.27  Aligned_cols=289  Identities=31%  Similarity=0.497  Sum_probs=225.5

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      .++|++.+.||+|+||+||+|.+..+++.||||.+...   ....+.+.+|+++++.+      .|+||+++++++....
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l------~hpnIv~l~~~~~~~~   97 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHM------RHENVIGLLDVFTPDE   97 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHC------CBTTBCCCSEEECSCS
T ss_pred             cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhC------CCcCCCCceeeEecCC
Confidence            37899999999999999999999999999999987432   33456788999999999      7899999999987642


Q ss_pred             C--CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          112 P--NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       112 ~--~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                      .  ....+|+||||++++|.+++..   ..+++..+..++.||+.||+|||++ ||+||||||+||++            
T Consensus        98 ~~~~~~~~~lv~e~~~~~L~~~~~~---~~l~~~~~~~~~~qi~~~L~~LH~~-~ivH~Dlkp~NIll------------  161 (367)
T 1cm8_A           98 TLDDFTDFYLVMPFMGTDLGKLMKH---EKLGEDRIQFLVYQMLKGLRYIHAA-GIIHRDLKPGNLAV------------  161 (367)
T ss_dssp             STTTCCCCEEEEECCSEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEE------------
T ss_pred             ccccCceEEEEEecCCCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC-CccccCcCHHHEEE------------
Confidence            1  2246799999999999998865   3489999999999999999999996 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                  +.++.+||+|||++......
T Consensus       162 ------------------------------------------------------------~~~~~~kl~Dfg~a~~~~~~  181 (367)
T 1cm8_A          162 ------------------------------------------------------------NEDCELKILDFGLARQADSE  181 (367)
T ss_dssp             ------------------------------------------------------------CTTCCEEECCCTTCEECCSS
T ss_pred             ------------------------------------------------------------cCCCCEEEEeeecccccccc
Confidence                                                                        44677999999999877766


Q ss_pred             cccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          270 FAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      ....++|+.|+|||++.+ ..++.++|||||||++|+|++|+.||.+.      ....++..+.+..|..+..+......
T Consensus       182 ~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~------~~~~~l~~i~~~~g~~~~~~~~~~~~  255 (367)
T 1cm8_A          182 MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGS------DHLDQLKEIMKVTGTPPAEFVQRLQS  255 (367)
T ss_dssp             CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHHHCCCCHHHHHTCSC
T ss_pred             cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHhcCCCCHHHHHHhhh
Confidence            677789999999999987 67899999999999999999999999876      47788899999999999877543322


Q ss_pred             cc--chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCCccc
Q 013220          349 SK--DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE  424 (447)
Q Consensus       349 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~~~~  424 (447)
                      ..  .+...      ........+.       ......++.+.+||.+||+.||++|||++|+|+||||+.......+
T Consensus       256 ~~~~~~~~~------~~~~~~~~~~-------~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~hp~f~~~~~~~~~  320 (367)
T 1cm8_A          256 DEAKNYMKG------LPELEKKDFA-------SILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLHDTEDE  320 (367)
T ss_dssp             HHHHHHHHH------SCCCCCCCGG-------GTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC-----
T ss_pred             HHHHHHHHh------CCCCCCCCHH-------HHCCCCCHHHHHHHHHHccCChhHCCCHHHHhcChHHHhhcCCccC
Confidence            11  00000      0000000111       1223456789999999999999999999999999999987655443

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=1.4e-44  Score=362.85  Aligned_cols=304  Identities=27%  Similarity=0.435  Sum_probs=235.3

Q ss_pred             CCCCccccccCcccc-CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCC
Q 013220           20 RKGGYHAVRVGDLFN-GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSN   96 (447)
Q Consensus        20 ~~~~~~~~~~g~~~~-~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~   96 (447)
                      ..++++.+..|+++. +++|++.+.||+|+||+||+|++..++..||+|++...  ....+.+.+|+++++.+      .
T Consensus        10 ~~~~~~~~~~g~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~   83 (364)
T 3qyz_A           10 AAAAGPEMVRGQVFDVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRF------R   83 (364)
T ss_dssp             -----CCBCC-CBCCCTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHC------C
T ss_pred             HhhcceEEEccEeccccccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhc------C
Confidence            356888999999987 68999999999999999999999999999999988643  33446788999999999      7


Q ss_pred             cceeeeecccccccC-CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCe
Q 013220           97 EKCVIRLIDHFKHAG-PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENI  175 (447)
Q Consensus        97 ~~~Iv~~~~~~~~~~-~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Ni  175 (447)
                      |+||+++++++.... ......++||||++++|.+++..   ..+++..+..++.|++.||+|||++ ||+||||||+||
T Consensus        84 h~niv~~~~~~~~~~~~~~~~~~iv~e~~~~~L~~~l~~---~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dikp~NI  159 (364)
T 3qyz_A           84 HENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKT---QHLSNDHICYFLYQILRGLKYIHSA-NVLHRDLKPSNL  159 (364)
T ss_dssp             CTTBCCCCEEECCSSTTTCCCEEEEEECCSEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGE
T ss_pred             CCCCccceeEEecCCccccceEEEEEcccCcCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCChHhE
Confidence            899999999987543 23357999999998899988864   3489999999999999999999997 999999999999


Q ss_pred             EeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccce
Q 013220          176 LLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRC  255 (447)
Q Consensus       176 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (447)
                      ++                                                                        +..+.+
T Consensus       160 l~------------------------------------------------------------------------~~~~~~  167 (364)
T 3qyz_A          160 LL------------------------------------------------------------------------NTTCDL  167 (364)
T ss_dssp             EE------------------------------------------------------------------------CTTCCE
T ss_pred             EE------------------------------------------------------------------------CCCCCE
Confidence            99                                                                        445679


Q ss_pred             eEeecCcccccccc------cccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHH
Q 013220          256 KVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHL  328 (447)
Q Consensus       256 kL~Dfg~a~~~~~~------~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~  328 (447)
                      +|+|||.+......      ....+||+.|+|||++.+. .++.++|||||||++|+|++|..||.+.      .....+
T Consensus       168 kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~------~~~~~~  241 (364)
T 3qyz_A          168 KICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGK------HYLDQL  241 (364)
T ss_dssp             EECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCS------SGGGHH
T ss_pred             EEEeCcceEecCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCC------ChHHHH
Confidence            99999999755422      2345789999999997754 5899999999999999999999999876      477788


Q ss_pred             HHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHH
Q 013220          329 ALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQ  408 (447)
Q Consensus       329 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~e  408 (447)
                      ..+...+|..+.+............    ............+..       .....+..+.+||.+||+.||++|||++|
T Consensus       242 ~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-------~~~~~~~~~~~li~~~L~~dP~~R~t~~e  310 (364)
T 3qyz_A          242 NHILGILGSPSQEDLNCIINLKARN----YLLSLPHKNKVPWNR-------LFPNADSKALDLLDKMLTFNPHKRIEVEQ  310 (364)
T ss_dssp             HHHHHHHCSCCHHHHHTCCCHHHHH----HHHTSCCCCCCCHHH-------HCTTSCHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred             HHHHHHhCCCCHHHHHHhhhhhHHH----HHHhcCCccCCCHHH-------hCCCCCHHHHHHHHHHcCCChhhCCCHHH
Confidence            8888999988876543322111000    000000000000110       11234668999999999999999999999


Q ss_pred             HhcCcccccccCCc
Q 013220          409 CLQHPWLSLRNSTR  422 (447)
Q Consensus       409 lL~hp~f~~~~~~~  422 (447)
                      +|+||||+......
T Consensus       311 ~l~hp~~~~~~~~~  324 (364)
T 3qyz_A          311 ALAHPYLEQYYDPS  324 (364)
T ss_dssp             HHTSGGGTTTCCGG
T ss_pred             HhcCcchhhccCcc
Confidence            99999999875443

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=2.7e-45  Score=358.02  Aligned_cols=262  Identities=28%  Similarity=0.473  Sum_probs=214.5

Q ss_pred             cccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceeeeecc
Q 013220           27 VRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVIRLID  105 (447)
Q Consensus        27 ~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~  105 (447)
                      +.+|+..  ++|++.++||+|+||+||+|++..+++.||+|++.... ...+.+.+|+.+++.+      .|+||+++++
T Consensus        13 ~~~~~~~--~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~~   84 (297)
T 3fxz_A           13 VSVGDPK--KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMREN------KNPNIVNYLD   84 (297)
T ss_dssp             SBSSCGG--GTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHC------CCTTBCCEEE
T ss_pred             cCcCChh--hceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcC------CCCCCCeEeE
Confidence            4566655  68999999999999999999999999999999876443 3345688999999998      8899999999


Q ss_pred             cccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCC
Q 013220          106 HFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       106 ~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~  184 (447)
                      ++...    ...++||||+ +++|.+++...   .+++..+..++.|++.||+|||++ ||+||||||+||++       
T Consensus        85 ~~~~~----~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~Dlkp~Nil~-------  149 (297)
T 3fxz_A           85 SYLVG----DELWVVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSN-QVIHRDIKSDNILL-------  149 (297)
T ss_dssp             EEEET----TEEEEEEECCTTCBHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEE-------
T ss_pred             EEEEC----CEEEEEEECCCCCCHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhC-CceeCCCCHHHEEE-------
Confidence            98853    6899999999 88999988643   489999999999999999999997 99999999999999       


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                       +.++.+||+|||++.
T Consensus       150 -----------------------------------------------------------------~~~~~~kl~Dfg~~~  164 (297)
T 3fxz_A          150 -----------------------------------------------------------------GMDGSVKLTDFGFCA  164 (297)
T ss_dssp             -----------------------------------------------------------------CTTCCEEECCCTTCE
T ss_pred             -----------------------------------------------------------------CCCCCEEEeeCCCce
Confidence                                                                             345679999999987


Q ss_pred             ccccc---cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          265 RANKQ---FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       265 ~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                      .....   ....+||+.|+|||++.+..++.++|||||||++|+|++|..||...+      .......+... +..   
T Consensus       165 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~------~~~~~~~~~~~-~~~---  234 (297)
T 3fxz_A          165 QITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNEN------PLRALYLIATN-GTP---  234 (297)
T ss_dssp             ECCSTTCCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSC------HHHHHHHHHHH-CSC---
T ss_pred             ecCCcccccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHhC-CCC---
Confidence            55432   334579999999999999999999999999999999999999997542      22222111110 000   


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                                                         ....+...+..+.+||.+||+.||++|||++|+|+||||+.....
T Consensus       235 -----------------------------------~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h~~~~~~~~~  279 (297)
T 3fxz_A          235 -----------------------------------ELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHQFLKIAKPL  279 (297)
T ss_dssp             -----------------------------------CCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGCCCG
T ss_pred             -----------------------------------CCCCccccCHHHHHHHHHHccCChhHCcCHHHHhhChhhcccCcc
Confidence                                               011234456789999999999999999999999999999976543

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=4.5e-45  Score=377.53  Aligned_cols=300  Identities=28%  Similarity=0.416  Sum_probs=216.1

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      .++|++.+.||+|+||+||+|++..+++.||||++...   ....+.+.+|+++++.+      +|+||+++++++....
T Consensus        52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~l~~~~~~~~  125 (458)
T 3rp9_A           52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRL------NHDHVVKVLDIVIPKD  125 (458)
T ss_dssp             CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHC------CCTTBCCEEEECCCSC
T ss_pred             CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhC------CCCCCCceEEEEecCC
Confidence            37899999999999999999999999999999987642   33456788999999999      7999999999986543


Q ss_pred             -CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 -PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 -~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                       .....+|+||||++++|..++...  ..+++..++.+++||+.||+|||++ ||+||||||+|||+             
T Consensus       126 ~~~~~~~~lv~e~~~~~L~~~~~~~--~~l~~~~~~~~~~qi~~aL~~LH~~-~iiHrDlKp~NILl-------------  189 (458)
T 3rp9_A          126 VEKFDELYVVLEIADSDFKKLFRTP--VYLTELHIKTLLYNLLVGVKYVHSA-GILHRDLKPANCLV-------------  189 (458)
T ss_dssp             TTTCCCEEEEECCCSEEHHHHHHSS--CCCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCGGGEEE-------------
T ss_pred             cccCceEEEEEeccccchhhhcccC--CCCCHHHHHHHHHHHHHHHHHHHhC-CcCCCCCChhhEEE-------------
Confidence             234689999999999999988654  4599999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc--
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--  268 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~--  268 (447)
                                                                                 +.++.+||+|||++.....  
T Consensus       190 -----------------------------------------------------------~~~~~~kl~DFGla~~~~~~~  210 (458)
T 3rp9_A          190 -----------------------------------------------------------NQDCSVKVCDFGLARTVDYPE  210 (458)
T ss_dssp             -----------------------------------------------------------CTTCCEEECCCTTCBCTTSCT
T ss_pred             -----------------------------------------------------------CCCCCEeecccccchhccCcc
Confidence                                                                       4467899999999975431  


Q ss_pred             ----------------------------ccccCCCCCCccChHHhh-cCCCCccchhHhHHHHHHHHhh-----------
Q 013220          269 ----------------------------QFAEEIQTRQYRAPEVIL-RAGYSFSVDMWSFACTAFELAT-----------  308 (447)
Q Consensus       269 ----------------------------~~~~~~gt~~y~aPE~l~-~~~~~~~~DiwSlGvil~~l~~-----------  308 (447)
                                                  ..+..+||++|+|||++. +..|+.++|||||||++|+|++           
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg~~~~~~~~~~  290 (458)
T 3rp9_A          211 NGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIKENVAYHAD  290 (458)
T ss_dssp             TCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTTSTTTCSSGGG
T ss_pred             ccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHhcccccccccc
Confidence                                        223457899999999875 5569999999999999999998           


Q ss_pred             CCCCCCCCCCCCC--------------CCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHh
Q 013220          309 GDMLFAPKSGQGF--------------CEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLL  374 (447)
Q Consensus       309 g~~Pf~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (447)
                      |..+|.+.+....              .....++..+++++|..+.+..........       .............. +
T Consensus       291 ~~p~f~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~  362 (458)
T 3rp9_A          291 RGPLFPGSSCFPLSPDQKAGNDFKFHTRGNRDQLNVIFNILGTPSEEDIEALEKEDA-------KRYIRIFPKREGTD-L  362 (458)
T ss_dssp             CCCSCC--------------------CHHHHHHHHHHHHHHCCCCHHHHHTSSCHHH-------HHHHTTSCCCCCCC-G
T ss_pred             ccccCCCCccccccccccccccccccccCCHHHHHHHHHHcCCCCHHHHhhcCCHHH-------HHHHHhcCCCCCCC-H
Confidence            6677765431110              123578888999999998776433322110       00000000000000 0


Q ss_pred             hhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCCccccc
Q 013220          375 VDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETK  426 (447)
Q Consensus       375 ~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~~~~~~  426 (447)
                      .   ......+.++.+||.+||+.||++|||++|+|+||||+..+....+..
T Consensus       363 ~---~~~~~~s~~~~dLl~~mL~~dP~~R~t~~e~L~Hp~f~~~~~~~~e~~  411 (458)
T 3rp9_A          363 A---ERFPASSADAIHLLKRMLVFNPNKRITINECLAHPFFKEVRIAEVETN  411 (458)
T ss_dssp             G---GGSTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTCCGGGCCC
T ss_pred             H---HHCCCCCHHHHHHHHHHhccCccccCCHHHHhcCHhhhhcCCCccCCC
Confidence            0   011234678999999999999999999999999999998876555443

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=2.7e-45  Score=362.00  Aligned_cols=251  Identities=27%  Similarity=0.423  Sum_probs=214.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|++.+.||+|+||+||+|++..+++.||+|+++...    ...+.+.+|..+++.+      .|+||+++++++..  
T Consensus         6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l------~hp~Iv~~~~~~~~--   77 (318)
T 1fot_A            6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIV------THPFIIRMWGTFQD--   77 (318)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSC------CBTTBCCEEEEEEC--
T ss_pred             HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhC------CCCCCceEeEEEEe--
Confidence            68999999999999999999999999999999987653    2345678899999888      89999999999875  


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                        ...+|+||||+ +++|.+++...  ..+++..++.++.||+.||+|||++ ||+||||||+||++             
T Consensus        78 --~~~~~lv~e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-~ivHrDlkp~NIll-------------  139 (318)
T 1fot_A           78 --AQQIFMIMDYIEGGELFSLLRKS--QRFPNPVAKFYAAEVCLALEYLHSK-DIIYRDLKPENILL-------------  139 (318)
T ss_dssp             --SSEEEEEECCCCSCBHHHHHHHT--SSCCHHHHHHHHHHHHHHHHHHHTT-TEECCCCCGGGEEE-------------
T ss_pred             --CCEEEEEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCChheEEE-------------
Confidence              36899999999 88999988754  3589999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF  270 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~  270 (447)
                                                                                 +..+.+||+|||++.......
T Consensus       140 -----------------------------------------------------------~~~g~~kL~Dfg~a~~~~~~~  160 (318)
T 1fot_A          140 -----------------------------------------------------------DKNGHIKITDFGFAKYVPDVT  160 (318)
T ss_dssp             -----------------------------------------------------------CTTSCEEECCCSSCEECSSCB
T ss_pred             -----------------------------------------------------------cCCCCEEEeecCcceecCCcc
Confidence                                                                       446789999999998776666


Q ss_pred             ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          271 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      ...+||+.|+|||++.+..++.++|+|||||++|+|++|..||...+      ......                     
T Consensus       161 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~------~~~~~~---------------------  213 (318)
T 1fot_A          161 YTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSN------TMKTYE---------------------  213 (318)
T ss_dssp             CCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSS------HHHHHH---------------------
T ss_pred             ccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCC------HHHHHH---------------------
Confidence            66789999999999999899999999999999999999999997542      111111                     


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC-----ChHHHhcCccccccc
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRN  419 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp-----ta~elL~hp~f~~~~  419 (447)
                                           .+......++...+.++.+||.+||+.||++||     +++|+++||||+...
T Consensus       214 ---------------------~i~~~~~~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~hp~f~~~~  266 (318)
T 1fot_A          214 ---------------------KILNAELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEVV  266 (318)
T ss_dssp             ---------------------HHHHCCCCCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTSGGGSSCC
T ss_pred             ---------------------HHHhCCCCCCCCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhcCccccCCC
Confidence                                 122222334555677899999999999999999     999999999998753

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=2.1e-45  Score=361.84  Aligned_cols=297  Identities=30%  Similarity=0.503  Sum_probs=212.2

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      .++|++.++||+|+||+||+|++..+++.||+|+++...  .....+.+|+++++.+      .|+||+++++++..   
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~~~~~~---   74 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKEL------KHENIVRLYDVIHT---   74 (317)
T ss_dssp             ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTC------CBTTBCCEEEEECC---
T ss_pred             ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhc------CCCCcceEEEEEEE---
Confidence            368999999999999999999999999999999876442  2345788899999998      78999999999875   


Q ss_pred             CcceEEEEEecccccHHHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          113 NGQHLCMVLEFLGDSLLRLIKYSRY----KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       113 ~~~~~~lvmE~~~~~L~~~~~~~~~----~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                       ....++||||++++|.+++.....    ..+++..+..++.||+.||+|||++ ||+||||||+||++           
T Consensus        75 -~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~-~ivH~Dlkp~NIl~-----------  141 (317)
T 2pmi_A           75 -ENKLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHEN-KILHRDLKPQNLLI-----------  141 (317)
T ss_dssp             -TTEEEEEEECCCCBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEE-----------
T ss_pred             -CCeEEEEEEecCCCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHC-CeeeCCCChHHeEE-----------
Confidence             368999999998899888765431    3488999999999999999999996 99999999999999           


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                   +..+.+||+|||++.....
T Consensus       142 -------------------------------------------------------------~~~~~~kl~Dfg~~~~~~~  160 (317)
T 2pmi_A          142 -------------------------------------------------------------NKRGQLKLGDFGLARAFGI  160 (317)
T ss_dssp             -------------------------------------------------------------CTTCCEEECCCSSCEETTS
T ss_pred             -------------------------------------------------------------cCCCCEEECcCccceecCC
Confidence                                                                         3456799999999976543


Q ss_pred             c---cccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhh
Q 013220          269 Q---FAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  344 (447)
Q Consensus       269 ~---~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (447)
                      .   ....++|+.|+|||++.+. .++.++|||||||++|+|++|..||.+.      .....+..+.+..|..+..+..
T Consensus       161 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~------~~~~~~~~i~~~~~~~~~~~~~  234 (317)
T 2pmi_A          161 PVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGT------NDEEQLKLIFDIMGTPNESLWP  234 (317)
T ss_dssp             CCCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCSCCTTTCG
T ss_pred             CcccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC------ChHHHHHHHHHHhCCCChhHhh
Confidence            2   3345789999999999874 6899999999999999999999999876      4677788888888887755422


Q ss_pred             CCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCCccc
Q 013220          345 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE  424 (447)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~~~~  424 (447)
                      ...+...+...      ........+...+..  ......+..+.+||.+||+.||++|||++|+|+||||++.......
T Consensus       235 ~~~~~~~~~~~------~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~~~~  306 (317)
T 2pmi_A          235 SVTKLPKYNPN------IQQRPPRDLRQVLQP--HTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHHPWFAEYYHHASM  306 (317)
T ss_dssp             GGGGCTTCCTT------CCCCCCCCSHHHHGG--GCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGCC----
T ss_pred             hhhhhhhcccc------cccccchhHHHhhcc--cccccCCHHHHHHHHHHCCCCcccCCCHHHHhCChhhhcccchhhc
Confidence            21111110000      000001111222111  1223456789999999999999999999999999999987766555


Q ss_pred             cccc
Q 013220          425 TKNK  428 (447)
Q Consensus       425 ~~~~  428 (447)
                      +...
T Consensus       307 ~~~~  310 (317)
T 2pmi_A          307 GGSR  310 (317)
T ss_dssp             ----
T ss_pred             cccc
Confidence            5443

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=3e-45  Score=359.80  Aligned_cols=270  Identities=26%  Similarity=0.372  Sum_probs=214.9

Q ss_pred             cccCCCCCCCccccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhh
Q 013220           14 EGIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVA   90 (447)
Q Consensus        14 ~~~~~~~~~~~~~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~   90 (447)
                      +....|...+|.|+.+|+++. ++|++.++||+|+||+||+|++..+++.||||++....   ........|+..+..+.
T Consensus        36 ~~~~~~~~~~~~p~~~~~~~~-~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~  114 (311)
T 3p1a_A           36 EASETLQSPGYDPSRPESFFQ-QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVG  114 (311)
T ss_dssp             CSCSSCCCTTCCTTSSSCHHH-HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHC
T ss_pred             CCCcccCCCCCCCCCccchhh-hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhc
Confidence            445668899999999999997 79999999999999999999999999999999875432   22334455555555543


Q ss_pred             cCCCCCcceeeeecccccccCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccC
Q 013220           91 DGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDL  170 (447)
Q Consensus        91 ~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Di  170 (447)
                           .|+||+++++++..    +..+++||||++++|.+.+.... ..+++..+..++.|++.||+|||++ ||+||||
T Consensus       115 -----~h~~iv~l~~~~~~----~~~~~lv~e~~~~~L~~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~-~ivH~Di  183 (311)
T 3p1a_A          115 -----QHPCCVRLEQAWEE----GGILYLQTELCGPSLQQHCEAWG-ASLPEAQVWGYLRDTLLALAHLHSQ-GLVHLDV  183 (311)
T ss_dssp             -----CCTTBCCEEEEEEE----TTEEEEEEECCCCBHHHHHHHHC-SCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCC
T ss_pred             -----CCCcEEEEEEEEEe----CCEEEEEEeccCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CEecCCC
Confidence                 79999999999875    46899999999889988876543 4699999999999999999999996 9999999


Q ss_pred             CCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCC
Q 013220          171 KPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDG  250 (447)
Q Consensus       171 kp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (447)
                      ||+||++                                                                        +
T Consensus       184 kp~NIll------------------------------------------------------------------------~  191 (311)
T 3p1a_A          184 KPANIFL------------------------------------------------------------------------G  191 (311)
T ss_dssp             SGGGEEE------------------------------------------------------------------------C
T ss_pred             CHHHEEE------------------------------------------------------------------------C
Confidence            9999999                                                                        4


Q ss_pred             cccceeEeecCcccccccc--cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHH
Q 013220          251 IDMRCKVVDFGNACRANKQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHL  328 (447)
Q Consensus       251 ~~~~~kL~Dfg~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~  328 (447)
                      ....+||+|||++......  .....||+.|+|||++.+ .++.++|||||||++|+|++|..||...         ...
T Consensus       192 ~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~---------~~~  261 (311)
T 3p1a_A          192 PRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGG---------EGW  261 (311)
T ss_dssp             GGGCEEECCCTTCEECC------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSH---------HHH
T ss_pred             CCCCEEEccceeeeecccCCCCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCc---------cHH
Confidence            4678999999998765433  233468999999999876 6899999999999999999997666432         111


Q ss_pred             HHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHH
Q 013220          329 ALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQ  408 (447)
Q Consensus       329 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~e  408 (447)
                      ..+.  .+..+..                                      ++...++.+.+||.+||+.||++|||++|
T Consensus       262 ~~~~--~~~~~~~--------------------------------------~~~~~~~~l~~li~~~L~~dP~~Rpt~~e  301 (311)
T 3p1a_A          262 QQLR--QGYLPPE--------------------------------------FTAGLSSELRSVLVMMLEPDPKLRATAEA  301 (311)
T ss_dssp             HHHT--TTCCCHH--------------------------------------HHTTSCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred             HHHh--ccCCCcc--------------------------------------cccCCCHHHHHHHHHHcCCChhhCcCHHH
Confidence            1110  0111110                                      11234678999999999999999999999


Q ss_pred             HhcCccccc
Q 013220          409 CLQHPWLSL  417 (447)
Q Consensus       409 lL~hp~f~~  417 (447)
                      +|+||||++
T Consensus       302 ll~hp~~~~  310 (311)
T 3p1a_A          302 LLALPVLRQ  310 (311)
T ss_dssp             HHTSGGGSC
T ss_pred             HHhCccccC
Confidence            999999985

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=1.8e-44  Score=370.68  Aligned_cols=295  Identities=30%  Similarity=0.446  Sum_probs=225.0

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.+.||+|+||+||+|++..+++.||||++...   ....+.+.+|+++++.+      .|+||+++++++.....
T Consensus        26 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~nIv~l~~~~~~~~~   99 (432)
T 3n9x_A           26 DNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRL------KSDYIIRLYDLIIPDDL   99 (432)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHC------CCTTBCCEEEECCCSCT
T ss_pred             CCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHc------CCCCcceEEEEEecCCC
Confidence            7899999999999999999999999999999988642   33456788999999999      78999999999876421


Q ss_pred             -CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 -NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 -~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                       ....+|+||||++++|.+++...  ..+++..++.+++||+.||+|||++ ||+||||||+|||+              
T Consensus       100 ~~~~~~~lv~e~~~~~L~~~~~~~--~~l~~~~~~~i~~qil~aL~~LH~~-givHrDlkp~NILl--------------  162 (432)
T 3n9x_A          100 LKFDELYIVLEIADSDLKKLFKTP--IFLTEEHIKTILYNLLLGENFIHES-GIIHRDLKPANCLL--------------  162 (432)
T ss_dssp             TTCCCEEEEEECCSEEHHHHHHSS--CCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEE--------------
T ss_pred             CcCCeEEEEEecCCcCHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCHHHeEE--------------
Confidence             22579999999988999988753  4589999999999999999999997 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                +.++.+||+|||++......  
T Consensus       163 ----------------------------------------------------------~~~~~~kL~DFGla~~~~~~~~  184 (432)
T 3n9x_A          163 ----------------------------------------------------------NQDCSVKVCDFGLARTINSEKD  184 (432)
T ss_dssp             ----------------------------------------------------------CTTCCEEECCCTTCEEC-----
T ss_pred             ----------------------------------------------------------CCCCCEEEccCCCccccccccc
Confidence                                                                      44678999999999754322  


Q ss_pred             -----------------------cccCCCCCCccChHHhh-cCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCC-----
Q 013220          270 -----------------------FAEEIQTRQYRAPEVIL-RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQG-----  320 (447)
Q Consensus       270 -----------------------~~~~~gt~~y~aPE~l~-~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~-----  320 (447)
                                             .+..+||++|+|||++. +..++.++|||||||++|+|++|..||......+     
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~p~f~  264 (432)
T 3n9x_A          185 TNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHINDPTNRFPLFP  264 (432)
T ss_dssp             --------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTCSSGGGCCCSCC
T ss_pred             ccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccccccccccccCC
Confidence                                   24568999999999974 5568999999999999999998655544321110     


Q ss_pred             ------C-----------CCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhccc---CchhHHhhhhcCC
Q 013220          321 ------F-----------CEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKF---WSLDRLLVDKYRF  380 (447)
Q Consensus       321 ------~-----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  380 (447)
                            .           .....++..+++++|.++.............       ..+.....   ..+...       
T Consensus       265 g~~~~~~~~~~~~~~~~~~~~~~ql~~i~~~~g~p~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-------  330 (432)
T 3n9x_A          265 GSSCFPLSPDRNSKKVHEKSNRDQLNIIFNIIGTPTEDDLKNINKPEVI-------KYIKLFPHRKPINLKQK-------  330 (432)
T ss_dssp             CSCSCC----------CHHHHHHHHHHHHHHHCSCCHHHHHTCCCHHHH-------HHHHTSCCCCCCCHHHH-------
T ss_pred             CccccccCcccccccccccchHHHHHHHHHhcCCCCHHHHHhccCHHHH-------HHHHhCCCCCCCCHHHH-------
Confidence                  0           0136788899999999997764433221100       00000000   000100       


Q ss_pred             ChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCCcccc
Q 013220          381 SETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDET  425 (447)
Q Consensus       381 ~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~~~~~  425 (447)
                      ....++++.+||.+||+.||++|||++|+|+||||+..+....+.
T Consensus       331 ~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~~~~~e~  375 (432)
T 3n9x_A          331 YPSISDDGINLLESMLKFNPNKRITIDQALDHPYLKDVRKKKLEN  375 (432)
T ss_dssp             STTSCHHHHHHHHHHSCSSTTTSCCHHHHHTCGGGTTTCCTTTC-
T ss_pred             CCCCCHHHHHHHHHHhcCCcccCCCHHHHhcChhhhhccCcccCc
Confidence            123567899999999999999999999999999999887655443

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=4.3e-45  Score=365.12  Aligned_cols=274  Identities=25%  Similarity=0.352  Sum_probs=210.5

Q ss_pred             CCCccccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH------hHHHHHHHHHHHHHhhcCCC
Q 013220           21 KGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ------FAQAALHEIEVLSAVADGDP   94 (447)
Q Consensus        21 ~~~~~~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~------~~~~~~~E~~~l~~l~~~~~   94 (447)
                      +|++.++..++.+-.++|++.+.||+|+||+||+|++..+++.||+|++.....      ..+.+.+|+++++.+     
T Consensus         9 ~g~~~~~~~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l-----   83 (351)
T 3c0i_A            9 GGGILDMADDDVLFEDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHML-----   83 (351)
T ss_dssp             -----------CCHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHC-----
T ss_pred             CcccccccCCCCccccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhC-----
Confidence            445666666555545899999999999999999999999999999998865432      246788999999999     


Q ss_pred             CCcceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCC
Q 013220           95 SNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSR--YKGLELNKVREICKYILTGLDYLHRELGIIHTDLK  171 (447)
Q Consensus        95 ~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~--~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dik  171 (447)
                       +|+||+++++++...    ..+|+||||| +++|.+.+....  ...+++..+..++.||+.||+|||++ ||+|||||
T Consensus        84 -~hpnIv~~~~~~~~~----~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~ivHrDlk  157 (351)
T 3c0i_A           84 -KHPHIVELLETYSSD----GMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDN-NIIHRDVK  157 (351)
T ss_dssp             -CCTTBCCEEEEEEET----TEEEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCS
T ss_pred             -CCCCCCcEEEEEEeC----CEEEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC-CceeccCC
Confidence             799999999998753    6899999999 789987775432  23489999999999999999999997 99999999


Q ss_pred             CCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCc
Q 013220          172 PENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGI  251 (447)
Q Consensus       172 p~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (447)
                      |+||++...                                                                     ..
T Consensus       158 p~NIl~~~~---------------------------------------------------------------------~~  168 (351)
T 3c0i_A          158 PHCVLLASK---------------------------------------------------------------------EN  168 (351)
T ss_dssp             GGGEEECSS---------------------------------------------------------------------ST
T ss_pred             hHHeEEecC---------------------------------------------------------------------CC
Confidence            999999431                                                                     12


Q ss_pred             ccceeEeecCcccccccc---cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHH
Q 013220          252 DMRCKVVDFGNACRANKQ---FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHL  328 (447)
Q Consensus       252 ~~~~kL~Dfg~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~  328 (447)
                      ...+||+|||++......   ....+||+.|+|||++.+..++.++|||||||++|+|++|..||...       .....
T Consensus       169 ~~~vkl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~-------~~~~~  241 (351)
T 3c0i_A          169 SAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGT-------KERLF  241 (351)
T ss_dssp             TCCEEECCCTTCEECCTTSCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSS-------HHHHH
T ss_pred             CCcEEEecCcceeEecCCCeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCc-------HHHHH
Confidence            345999999999765432   23457999999999999988999999999999999999999999753       11112


Q ss_pred             HHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHH
Q 013220          329 ALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQ  408 (447)
Q Consensus       329 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~e  408 (447)
                      ..+....-..+..                                      ....++..+.+||.+||+.||++|||+.|
T Consensus       242 ~~i~~~~~~~~~~--------------------------------------~~~~~s~~~~~li~~~L~~dP~~R~s~~e  283 (351)
T 3c0i_A          242 EGIIKGKYKMNPR--------------------------------------QWSHISESAKDLVRRMLMLDPAERITVYE  283 (351)
T ss_dssp             HHHHHTCCCCCHH--------------------------------------HHTTSCHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred             HHHHcCCCCCCcc--------------------------------------ccccCCHHHHHHHHHHCCCChhHCcCHHH
Confidence            2111100000000                                      00124668899999999999999999999


Q ss_pred             HhcCccccccc
Q 013220          409 CLQHPWLSLRN  419 (447)
Q Consensus       409 lL~hp~f~~~~  419 (447)
                      +|+||||+...
T Consensus       284 ~l~hp~~~~~~  294 (351)
T 3c0i_A          284 ALNHPWLKERD  294 (351)
T ss_dssp             HHTSHHHHTHH
T ss_pred             HhcChhhcCCc
Confidence            99999998753

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=3.8e-45  Score=363.91  Aligned_cols=251  Identities=26%  Similarity=0.423  Sum_probs=211.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|++.+.||+|+||+||+|++..+++.||+|+++...    .....+.+|+++++.+      .|++|+++++++... 
T Consensus         5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~l~~~~~~~-   77 (337)
T 1o6l_A            5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNT------RHPFLTALKYAFQTH-   77 (337)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSC------CCTTBCCEEEEEECS-
T ss_pred             HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhC------CCCcCcceEEEEEeC-
Confidence            68999999999999999999999999999999987643    2345678899999888      799999999998853 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                         ..+|+||||+ +++|...+...  ..+++..++.++.||+.||+|||++ ||+||||||+||++             
T Consensus        78 ---~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-~ivHrDlkp~NIll-------------  138 (337)
T 1o6l_A           78 ---DRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSALEYLHSR-DVVYRDIKLENLML-------------  138 (337)
T ss_dssp             ---SEEEEEEECCTTCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCGGGEEE-------------
T ss_pred             ---CEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCcCCHHHEEE-------------
Confidence               6899999999 88999888654  3589999999999999999999997 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc---
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---  267 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~---  267 (447)
                                                                                 +..+.+||+|||++....   
T Consensus       139 -----------------------------------------------------------~~~g~vkL~DFG~a~~~~~~~  159 (337)
T 1o6l_A          139 -----------------------------------------------------------DKDGHIKITDFGLCKEGISDG  159 (337)
T ss_dssp             -----------------------------------------------------------CTTSCEEECCCTTCBCSCCTT
T ss_pred             -----------------------------------------------------------CCCCCEEEeeccchhhcccCC
Confidence                                                                       446789999999997532   


Q ss_pred             cccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          268 KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       268 ~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                      ......+||+.|+|||++.+..++.++|+|||||++|+|++|..||...+      .....                   
T Consensus       160 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~------~~~~~-------------------  214 (337)
T 1o6l_A          160 ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD------HERLF-------------------  214 (337)
T ss_dssp             CCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSS------HHHHH-------------------
T ss_pred             CcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCC------HHHHH-------------------
Confidence            22345679999999999999899999999999999999999999997542      11111                   


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC-----ChHHHhcCccccccc
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRN  419 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp-----ta~elL~hp~f~~~~  419 (447)
                                             ..+......++...+.++.+||.+||+.||++||     +++|+++||||+..+
T Consensus       215 -----------------------~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h~~f~~~~  268 (337)
T 1o6l_A          215 -----------------------ELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSIN  268 (337)
T ss_dssp             -----------------------HHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTTCC
T ss_pred             -----------------------HHHHcCCCCCCCCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcCCCcCCCC
Confidence                                   1122223335566678999999999999999999     999999999998653

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=9e-45  Score=352.01  Aligned_cols=279  Identities=25%  Similarity=0.453  Sum_probs=213.0

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH---hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ---FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~---~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.++||+|+||+||+|++ .+++.||+|.+.....   ....+.+|+++++.+      .|+||+++++++...  
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~~--   72 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQN-NYGETFALKKIRLEKEDEGIPSTTIREISILKEL------KHSNIVKLYDVIHTK--   72 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEE-TTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGC------CCTTBCCEEEEEECS--
T ss_pred             ccchhhhhcccCCCEEEEEEEc-CCCCEEEEEEEeccccccccchhHHHHHHHHHhc------CCCCEeeeeeEEccC--
Confidence            5899999999999999999998 6789999998764432   235678899999998      789999999998753  


Q ss_pred             CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          113 NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       113 ~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                        ...++||||+.++|.+++.... ..+++..+..++.|++.||+|||++ ||+||||||+||++               
T Consensus        73 --~~~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~Nil~---------------  133 (288)
T 1ob3_A           73 --KRLVLVFEHLDQDLKKLLDVCE-GGLESVTAKSFLLQLLNGIAYCHDR-RVLHRDLKPQNLLI---------------  133 (288)
T ss_dssp             --SCEEEEEECCSEEHHHHHHTST-TCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEE---------------
T ss_pred             --CeEEEEEEecCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEE---------------
Confidence              6899999999879988886532 4589999999999999999999997 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---  269 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---  269 (447)
                                                                               +.++.+||+|||++......   
T Consensus       134 ---------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~  156 (288)
T 1ob3_A          134 ---------------------------------------------------------NREGELKIADFGLARAFGIPVRK  156 (288)
T ss_dssp             ---------------------------------------------------------CTTSCEEECCTTHHHHHCC----
T ss_pred             ---------------------------------------------------------cCCCCEEEeECccccccCccccc
Confidence                                                                     44567999999999755422   


Q ss_pred             cccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          270 FAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      .....+|+.|+|||++.+. .++.++|||||||++|+|++|..||...      .....+..+.+..+..+.....   .
T Consensus       157 ~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~---~  227 (288)
T 1ob3_A          157 YTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGV------SEADQLMRIFRILGTPNSKNWP---N  227 (288)
T ss_dssp             -----CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCCCCTTTST---T
T ss_pred             cccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHHCCCChhhch---h
Confidence            2345789999999999764 5899999999999999999999999765      4566777777777766532210   0


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                      ...............   ...+.       .+....++.+.+||.+||+.||++|||++|+|+||||++.
T Consensus       228 ~~~~~~~~~~~~~~~---~~~~~-------~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~  287 (288)
T 1ob3_A          228 VTELPKYDPNFTVYE---PLPWE-------SFLKGLDESGIDLLSKMLKLDPNQRITAKQALEHAYFKEN  287 (288)
T ss_dssp             GGGSTTCCTTCCCCC---CCCGG-------GTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGGC-
T ss_pred             hhccccccccccccc---CccHH-------HHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhcCcchhhc
Confidence            000000000000000   00000       1223456789999999999999999999999999999864

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=7e-45  Score=365.29  Aligned_cols=259  Identities=27%  Similarity=0.419  Sum_probs=210.3

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH-------hHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ-------FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~-------~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      ++|++.+.||+|+||+||+|++..++..||+|+++....       ..+.+.+|+++++.+      .||||++++++|.
T Consensus        12 ~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l------~hpnIv~l~~~~~   85 (361)
T 2yab_A           12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQV------LHPNIITLHDVYE   85 (361)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTC------CCTTBCCEEEEEE
T ss_pred             hceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhC------CCcCCCcEEEEEE
Confidence            689999999999999999999999999999998875432       245788999999998      7999999999987


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCc
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                      .    ...+++||||+ +++|.+++...  ..+++..+..++.||+.||+|||++ ||+||||||+||++....      
T Consensus        86 ~----~~~~~lv~e~~~gg~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~-givHrDlkp~NIll~~~~------  152 (361)
T 2yab_A           86 N----RTDVVLILELVSGGELFDFLAQK--ESLSEEEATSFIKQILDGVNYLHTK-KIAHFDLKPENIMLLDKN------  152 (361)
T ss_dssp             C----SSEEEEEEECCCSCBHHHHHTTC--SCCBHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEESCTT------
T ss_pred             e----CCEEEEEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEEeCCC------
Confidence            5    36899999999 89999988643  4599999999999999999999996 999999999999994310      


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                    .....+||+|||++....
T Consensus       153 --------------------------------------------------------------~~~~~vkl~DFG~a~~~~  170 (361)
T 2yab_A          153 --------------------------------------------------------------IPIPHIKLIDFGLAHEIE  170 (361)
T ss_dssp             --------------------------------------------------------------SSSCCEEECCCSSCEECC
T ss_pred             --------------------------------------------------------------CCccCEEEEecCCceEcC
Confidence                                                                          012369999999997654


Q ss_pred             cc--cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          268 KQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       268 ~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                      ..  ....+||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+      .......+......++..+   
T Consensus       171 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~------~~~~~~~i~~~~~~~~~~~---  241 (361)
T 2yab_A          171 DGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDT------KQETLANITAVSYDFDEEF---  241 (361)
T ss_dssp             TTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSS------HHHHHHHHHTTCCCCCHHH---
T ss_pred             CCCccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHhcCCCCCchh---
Confidence            32  345679999999999998899999999999999999999999997652      2222222222111111110   


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                         ...+++.+.+||.+||+.||++|||++|+|+||||+...
T Consensus       242 -----------------------------------~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~hp~~~~~~  280 (361)
T 2yab_A          242 -----------------------------------FSQTSELAKDFIRKLLVKETRKRLTIQEALRHPWITPVD  280 (361)
T ss_dssp             -----------------------------------HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTSCSS
T ss_pred             -----------------------------------ccCCCHHHHHHHHHHCCCChhHCcCHHHHhcCcCcCCCc
Confidence                                               123466889999999999999999999999999998543

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.2e-45  Score=362.75  Aligned_cols=250  Identities=27%  Similarity=0.425  Sum_probs=208.7

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH----hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ----FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~----~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|++.+.||+|+||+||+|++..+++.||+|++.....    ....+.+|+++++.+      .|+||+++++++... 
T Consensus         9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l------~hpnIv~l~~~~~~~-   81 (336)
T 3h4j_B            9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLL------RHPHIIKLYDVITTP-   81 (336)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTC------CCTTBCCEEEEEECS-
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhC------CCCCCCeEEEEEEeC-
Confidence            689999999999999999999999999999998875432    234688999999998      799999999998854 


Q ss_pred             CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          112 PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       112 ~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                         ...++||||++++|.+.+...  ..+++..++.++.|++.||+|||++ ||+||||||+||++              
T Consensus        82 ---~~~~lv~E~~~g~l~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~-givH~Dlkp~NIll--------------  141 (336)
T 3h4j_B           82 ---TDIVMVIEYAGGELFDYIVEK--KRMTEDEGRRFFQQIICAIEYCHRH-KIVHRDLKPENLLL--------------  141 (336)
T ss_dssp             ---SEEEEEECCCCEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHH-TCCCCCCSTTTEEE--------------
T ss_pred             ---CEEEEEEECCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEecCCchhhEEE--------------
Confidence               689999999988998888654  3599999999999999999999997 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                +..+.+||+|||++......  
T Consensus       142 ----------------------------------------------------------~~~~~~kl~DFG~s~~~~~~~~  163 (336)
T 3h4j_B          142 ----------------------------------------------------------DDNLNVKIADFGLSNIMTDGNF  163 (336)
T ss_dssp             ----------------------------------------------------------CTTCCEEECCSSCTBTTTTSBT
T ss_pred             ----------------------------------------------------------cCCCCEEEEEeccceeccCCcc
Confidence                                                                      44667999999999754432  


Q ss_pred             cccCCCCCCccChHHhhcCCC-CccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          270 FAEEIQTRQYRAPEVILRAGY-SFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~~-~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      ....+||+.|+|||++.+..+ +.++|||||||++|+|++|..||.........                          
T Consensus       164 ~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~--------------------------  217 (336)
T 3h4j_B          164 LKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLF--------------------------  217 (336)
T ss_dssp             TCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTCB--------------------------
T ss_pred             cccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHHH--------------------------
Confidence            345689999999999988776 78999999999999999999999765321110                          


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                                            ..+......++...+..+.+||.+||+.||.+|||++|+++||||+..
T Consensus       218 ----------------------~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~hp~~~~~  265 (336)
T 3h4j_B          218 ----------------------KKVNSCVYVMPDFLSPGAQSLIRRMIVADPMQRITIQEIRRDPWFNVN  265 (336)
T ss_dssp             ----------------------CCCCSSCCCCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTTCHHHHTT
T ss_pred             ----------------------HHHHcCCCCCcccCCHHHHHHHHHHcCCChhHCcCHHHHHhChhhccC
Confidence                                  000011122445567789999999999999999999999999999864

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=1.1e-44  Score=367.91  Aligned_cols=263  Identities=23%  Similarity=0.360  Sum_probs=214.1

Q ss_pred             cCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           34 NGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        34 ~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      +.++|++.+.||+|+||+||+|++..+++.||+|+++...    .....+..|..+++.+.     +|+||++++++|..
T Consensus        50 ~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~-----~hp~Iv~l~~~~~~  124 (396)
T 4dc2_A           50 GLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQAS-----NHPFLVGLHSCFQT  124 (396)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHT-----TCTTBCCEEEEEEC
T ss_pred             ChhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcC-----CCCCcCeeEEEEEE
Confidence            3478999999999999999999999999999999987643    23346788999998875     79999999999885


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                          ...+|+||||+ +++|...+...  ..+++..++.++.||+.||+|||++ ||+||||||+|||+           
T Consensus       125 ----~~~~~lV~E~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~~-givHrDLKp~NILl-----------  186 (396)
T 4dc2_A          125 ----ESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLHER-GIIYRDLKLDNVLL-----------  186 (396)
T ss_dssp             ----SSEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCGGGEEE-----------
T ss_pred             ----CCEEEEEEEcCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CEEeccCCHHHEEE-----------
Confidence                36899999999 88999888754  3599999999999999999999996 99999999999999           


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccc--
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA--  266 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~--  266 (447)
                                                                                   +..+.+||+|||+++..  
T Consensus       187 -------------------------------------------------------------~~~g~ikL~DFGla~~~~~  205 (396)
T 4dc2_A          187 -------------------------------------------------------------DSEGHIKLTDYGMCKEGLR  205 (396)
T ss_dssp             -------------------------------------------------------------CTTSCEEECCCTTCBCCCC
T ss_pred             -------------------------------------------------------------CCCCCEEEeecceeeeccc
Confidence                                                                         44678999999999752  


Q ss_pred             -ccccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          267 -NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       267 -~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                       .......+||+.|+|||++.+..++.++|+|||||++|+|++|..||.......... ......+              
T Consensus       206 ~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~-~~~~~~~--------------  270 (396)
T 4dc2_A          206 PGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPD-QNTEDYL--------------  270 (396)
T ss_dssp             TTCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC-------CCHHHH--------------
T ss_pred             CCCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccc-hhhHHHH--------------
Confidence             233445689999999999999999999999999999999999999997543111000 0000000              


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCCh------HHHhcCccccccc
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA------QQCLQHPWLSLRN  419 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta------~elL~hp~f~~~~  419 (447)
                                              ...+......++...+.++.+||.+||+.||.+||++      +|+++||||+..+
T Consensus       271 ------------------------~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~ei~~Hpff~~i~  326 (396)
T 4dc2_A          271 ------------------------FQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVD  326 (396)
T ss_dssp             ------------------------HHHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTTSTTCSTTTHHHHHHHSTTTTTCC
T ss_pred             ------------------------HHHHhccccCCCCcCCHHHHHHHHHHhcCCHhHcCCCCCCCCHHHHhcCccccCCC
Confidence                                    1223334445667778899999999999999999996      7999999998764

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4.9e-45  Score=360.42  Aligned_cols=258  Identities=25%  Similarity=0.395  Sum_probs=212.4

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      ++|++.+.||+|+||+||+|.+..+++.||+|+++........+.+|+++++.+      .|+||+++++++...    .
T Consensus         5 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l------~hpnIv~~~~~~~~~----~   74 (321)
T 1tki_A            5 EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIA------RHRNILHLHESFESM----E   74 (321)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHS------CCTTBCCEEEEEEET----T
T ss_pred             hceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCcccHHHHHHHHHHHHhC------CCCCCCeEeEEEecC----C
Confidence            789999999999999999999999999999999876666567788999999999      799999999999754    6


Q ss_pred             eEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          116 HLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       116 ~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      .+++||||| +++|.+.+.... ..+++..+..++.|++.||+|||++ ||+||||||+||++..               
T Consensus        75 ~~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~-givH~Dlkp~NIl~~~---------------  137 (321)
T 1tki_A           75 ELVMIFEFISGLDIFERINTSA-FELNEREIVSYVHQVCEALQFLHSH-NIGHFDIRPENIIYQT---------------  137 (321)
T ss_dssp             EEEEEECCCCCCBHHHHHTSSS-CCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEESS---------------
T ss_pred             EEEEEEEeCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CCCcCCCCHHHEEEcc---------------
Confidence            899999999 789998885432 3589999999999999999999996 9999999999999943               


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--ccc
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FAE  272 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--~~~  272 (447)
                                                                             .....++|+|||++......  ...
T Consensus       138 -------------------------------------------------------~~~~~~kl~Dfg~a~~~~~~~~~~~  162 (321)
T 1tki_A          138 -------------------------------------------------------RRSSTIKIIEFGQARQLKPGDNFRL  162 (321)
T ss_dssp             -------------------------------------------------------SSCCCEEECCCTTCEECCTTCEEEE
T ss_pred             -------------------------------------------------------CCCCCEEEEECCCCeECCCCCcccc
Confidence                                                                   12467999999999765432  234


Q ss_pred             CCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccch
Q 013220          273 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  352 (447)
Q Consensus       273 ~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  352 (447)
                      .+||+.|+|||++.+..++.++|||||||++|+|++|..||...+      ....+..+......++...          
T Consensus       163 ~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~------~~~~~~~i~~~~~~~~~~~----------  226 (321)
T 1tki_A          163 LFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAET------NQQIIENIMNAEYTFDEEA----------  226 (321)
T ss_dssp             EESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSS------HHHHHHHHHHTCCCCCHHH----------
T ss_pred             ccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCC------HHHHHHHHHcCCCCCChhh----------
Confidence            578999999999998888999999999999999999999997652      2333333322111111100          


Q ss_pred             hcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          353 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                  ...++.++.+||.+||+.||++|||+.|+|+||||+...
T Consensus       227 ----------------------------~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~hp~~~~~~  265 (321)
T 1tki_A          227 ----------------------------FKEISIEAMDFVDRLLVKERKSRMTASEALQHPWLKQKI  265 (321)
T ss_dssp             ----------------------------HTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHSCG
T ss_pred             ----------------------------hccCCHHHHHHHHHHcCCChhHCcCHHHHhcChhhccCc
Confidence                                        013466899999999999999999999999999998753

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=6e-44  Score=359.39  Aligned_cols=311  Identities=28%  Similarity=0.443  Sum_probs=236.3

Q ss_pred             CccccCCCCCCCccccccCcc---ccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHH
Q 013220           12 DDEGIDSYRKGGYHAVRVGDL---FNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEV   85 (447)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~g~~---~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~   85 (447)
                      -.+........+|....++..   + .++|.+.+.||+|+||+||+|++..+++.||+|++...   ......+.+|+++
T Consensus        16 ~~~~m~~~~~~g~~~~~~~~~~~~l-~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~   94 (371)
T 4exu_A           16 PRGSMSLIRKKGFYKQDVNKTAWEL-PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLL   94 (371)
T ss_dssp             -----CCSSCTTEEEEEETTEEEEE-ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             ccCceeeeccccceeeeeccceecc-cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHH
Confidence            344456677888888776653   3 37999999999999999999999999999999988753   3345678899999


Q ss_pred             HHHhhcCCCCCcceeeeecccccccCCC--cceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhC
Q 013220           86 LSAVADGDPSNEKCVIRLIDHFKHAGPN--GQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHREL  163 (447)
Q Consensus        86 l~~l~~~~~~~~~~Iv~~~~~~~~~~~~--~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~  163 (447)
                      ++.+      .|+||+++++++......  ....++||||++++|.+.+.    ..+++..+..++.|++.||+|||++ 
T Consensus        95 l~~l------~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~----~~~~~~~~~~i~~qi~~aL~~LH~~-  163 (371)
T 4exu_A           95 LKHM------QHENVIGLLDVFTPASSLRNFYDFYLVMPFMQTDLQKIMG----MEFSEEKIQYLVYQMLKGLKYIHSA-  163 (371)
T ss_dssp             HHHC------CCTTBCCCSEEECSCSSSTTCCCCEEEEECCCEEHHHHTT----SCCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHhc------CCCCchhhhhheeccCCcccceeEEEEEccccccHHHHhh----cCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence            9999      789999999998765321  12359999999888877663    3489999999999999999999997 


Q ss_pred             CcccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCC
Q 013220          164 GIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPK  243 (447)
Q Consensus       164 gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (447)
                      ||+||||||+||++                                                                  
T Consensus       164 ~ivH~Dikp~NIll------------------------------------------------------------------  177 (371)
T 4exu_A          164 GVVHRDLKPGNLAV------------------------------------------------------------------  177 (371)
T ss_dssp             TCCCSCCCGGGEEE------------------------------------------------------------------
T ss_pred             CCcCCCcCHHHeEE------------------------------------------------------------------
Confidence            99999999999999                                                                  


Q ss_pred             CCccCCCcccceeEeecCcccccccccccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCC
Q 013220          244 PERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFC  322 (447)
Q Consensus       244 ~~~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~  322 (447)
                            +.++.++|+|||++..........+||+.|+|||.+.+ ..++.++|||||||++|+|++|..||.+.      
T Consensus       178 ------~~~~~~kL~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~------  245 (371)
T 4exu_A          178 ------NEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGK------  245 (371)
T ss_dssp             ------CTTCCEEECSTTCC--------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCS------
T ss_pred             ------CCCCCEEEEecCcccccccCcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCC------
Confidence                  44567999999999877776677789999999999987 67899999999999999999999999876      


Q ss_pred             CchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCC
Q 013220          323 EDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEK  402 (447)
Q Consensus       323 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~k  402 (447)
                      +....+..+.+..|..+.++..........       ...............    ......++.+.+||.+||+.||++
T Consensus       246 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~----~~~~~~~~~~~~li~~~L~~dP~~  314 (371)
T 4exu_A          246 DYLDQLTQILKVTGVPGTEFVQKLNDKAAK-------SYIQSLPQTPRKDFT----QLFPRASPQAADLLEKMLELDVDK  314 (371)
T ss_dssp             SHHHHHHHHHHHHCCCCHHHHTTCSCHHHH-------HHHHHSCCCCCCCHH----HHSTTSCHHHHHHHHHHSCSCTTT
T ss_pred             ChHHHHHHHHHHhCCCcHHHHHHhhhhhhh-------hhhhccCCCcchhHH----HhccccChHHHHHHHHHCCCChhh
Confidence            477788888899999888765443221100       000000000000000    012234678999999999999999


Q ss_pred             CCChHHHhcCcccccccCCcc
Q 013220          403 RPTAQQCLQHPWLSLRNSTRD  423 (447)
Q Consensus       403 Rpta~elL~hp~f~~~~~~~~  423 (447)
                      |||++|+|+||||+.......
T Consensus       315 Rpt~~ell~hp~f~~~~~~~~  335 (371)
T 4exu_A          315 RLTAAQALTHPFFEPFRDPEE  335 (371)
T ss_dssp             SCCHHHHHTSGGGTTTCCGGG
T ss_pred             cCCHHHHhcCcccccCCCccc
Confidence            999999999999997654433

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=5.7e-45  Score=363.76  Aligned_cols=253  Identities=29%  Similarity=0.442  Sum_probs=211.9

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      .++|++.+.||+|+||.||+|++..+++.||+|+++...    .....+..|.++++.+.     .|+||+++++++...
T Consensus        16 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~-----~hp~iv~l~~~~~~~   90 (345)
T 1xjd_A           16 IEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAW-----EHPFLTHMFCTFQTK   90 (345)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHT-----TCTTBCCEEEEEECS
T ss_pred             hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcC-----CCCCCCcEEEEEEeC
Confidence            478999999999999999999999999999999987653    23456778999988764     799999999998853


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                          ..+|+||||+ +++|.+++...  ..+++..++.++.||+.||+|||++ ||+||||||+||++            
T Consensus        91 ----~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-~ivHrDlkp~NIll------------  151 (345)
T 1xjd_A           91 ----ENLFFVMEYLNGGDLMYHIQSC--HKFDLSRATFYAAEIILGLQFLHSK-GIVYRDLKLDNILL------------  151 (345)
T ss_dssp             ----SEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCGGGEEE------------
T ss_pred             ----CEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEeCCCChhhEEE------------
Confidence                6899999999 88999988754  3489999999999999999999997 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc--
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--  267 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~--  267 (447)
                                                                                  +..+.+||+|||++....  
T Consensus       152 ------------------------------------------------------------~~~g~vkL~DFG~a~~~~~~  171 (345)
T 1xjd_A          152 ------------------------------------------------------------DKDGHIKIADFGMCKENMLG  171 (345)
T ss_dssp             ------------------------------------------------------------CTTSCEEECCCTTCBCCCCT
T ss_pred             ------------------------------------------------------------CCCCCEEEeEChhhhhcccC
Confidence                                                                        446789999999997532  


Q ss_pred             -cccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCC
Q 013220          268 -KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  346 (447)
Q Consensus       268 -~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  346 (447)
                       ......+||+.|+|||++.+..++.++|+|||||++|+|++|..||...+      .......                
T Consensus       172 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~------~~~~~~~----------------  229 (345)
T 1xjd_A          172 DAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQD------EEELFHS----------------  229 (345)
T ss_dssp             TCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHH----------------
T ss_pred             CCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCC------HHHHHHH----------------
Confidence             23345689999999999999899999999999999999999999997652      1111111                


Q ss_pred             CCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChH-HHhcCccccccc
Q 013220          347 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQ-QCLQHPWLSLRN  419 (447)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~-elL~hp~f~~~~  419 (447)
                                                +......++...+.++.+||.+||+.||++||++. ++++||||+..+
T Consensus       230 --------------------------i~~~~~~~p~~~s~~~~~li~~lL~~dp~~R~~~~~~i~~hp~f~~~~  277 (345)
T 1xjd_A          230 --------------------------IRMDNPFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQHPLFREIN  277 (345)
T ss_dssp             --------------------------HHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGGGSGGGTTCC
T ss_pred             --------------------------HHhCCCCCCcccCHHHHHHHHHHhcCCHhHcCCChHHHHcCccccCCC
Confidence                                      11122234455677899999999999999999998 999999998764

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=4.6e-45  Score=361.33  Aligned_cols=286  Identities=28%  Similarity=0.447  Sum_probs=215.1

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.++||+|+||+||+|++..+++.||+|+++...   .....+.+|+++++.+      .|+||+++++++...  
T Consensus        34 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~~--  105 (329)
T 3gbz_A           34 DRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKEL------QHRNIIELKSVIHHN--  105 (329)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGC------CCTTBCCEEEEEEET--
T ss_pred             hhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHc------CCCCcceEEEEEecC--
Confidence            78999999999999999999999999999999886442   2234567899999998      789999999998854  


Q ss_pred             CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          113 NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       113 ~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                        ...++||||++++|.+++...  ..+++..++.++.||+.||+|||++ ||+||||||+||++.....          
T Consensus       106 --~~~~lv~e~~~~~L~~~~~~~--~~~~~~~~~~i~~ql~~~l~~LH~~-~ivH~Dlkp~NIll~~~~~----------  170 (329)
T 3gbz_A          106 --HRLHLIFEYAENDLKKYMDKN--PDVSMRVIKSFLYQLINGVNFCHSR-RCLHRDLKPQNLLLSVSDA----------  170 (329)
T ss_dssp             --TEEEEEEECCSEEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEEC-------------
T ss_pred             --CEEEEEEecCCCCHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CEECCCCCHHHEEEecCCC----------
Confidence              689999999988999988754  3489999999999999999999997 9999999999999954210          


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc---c
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---Q  269 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~---~  269 (447)
                                                                               +....+||+|||++.....   .
T Consensus       171 ---------------------------------------------------------~~~~~~kl~Dfg~a~~~~~~~~~  193 (329)
T 3gbz_A          171 ---------------------------------------------------------SETPVLKIGDFGLARAFGIPIRQ  193 (329)
T ss_dssp             -----------------------------------------------------------CCEEEECCTTHHHHHC-----
T ss_pred             ---------------------------------------------------------CccceEEECcCCCccccCCcccc
Confidence                                                                     2245699999999976542   2


Q ss_pred             cccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          270 FAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      ....++|+.|+|||++.+. .++.++|||||||++|+|++|..||...      .....+..+.+..+..+.........
T Consensus       194 ~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (329)
T 3gbz_A          194 FTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGD------SEIDQLFKIFEVLGLPDDTTWPGVTA  267 (329)
T ss_dssp             ------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHHHCCCCTTTSTTGGG
T ss_pred             cCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCC------CHHHHHHHHHHHhCCCchhhhhhhhh
Confidence            3345789999999999875 4899999999999999999999999876      46677777888777766443211111


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                      ...+...      ........+...+      +...++++.+||.+||+.||++|||++|+|+||||+..+
T Consensus       268 ~~~~~~~------~~~~~~~~~~~~~------~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~  326 (329)
T 3gbz_A          268 LPDWKQS------FPKFRGKTLKRVL------GALLDDEGLDLLTAMLEMDPVKRISAKNALEHPYFSHND  326 (329)
T ss_dssp             STTCCTT------CCCCCCCCHHHHH------GGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSSC
T ss_pred             hhhhhhh------hhhhccccHhhhc------ccccCHHHHHHHHHHccCChhhCCCHHHHhCCcccCCCC
Confidence            1000000      0000011111111      122467889999999999999999999999999999753

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=4.5e-45  Score=360.60  Aligned_cols=289  Identities=26%  Similarity=0.458  Sum_probs=219.8

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHh--HHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQF--AQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~--~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      ++|++.++||+|+||+||+|++..+++.||+|++......  ...+.+|+++++.+      .|+||+++++++..    
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~----   71 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDL------KHANIVTLHDIIHT----   71 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCC------CCTTBCCEEEEEEC----
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhc------CCCCCCeeeeEEee----
Confidence            5899999999999999999999999999999988654321  22455799999888      78999999999875    


Q ss_pred             cceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          114 GQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       114 ~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ....++||||++++|.+.+.... ..+++..+..++.||+.||+|||++ ||+||||||+||++                
T Consensus        72 ~~~~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~aL~~LH~~-~ivH~Dikp~NIl~----------------  133 (324)
T 3mtl_A           72 EKSLTLVFEYLDKDLKQYLDDCG-NIINMHNVKLFLFQLLRGLAYCHRQ-KVLHRDLKPQNLLI----------------  133 (324)
T ss_dssp             SSCEEEEEECCSEEHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHT-TEEESSCCGGGEEE----------------
T ss_pred             CCEEEEEecccccCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CccCCCcCHHHEEE----------------
Confidence            36899999999888888876543 4589999999999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---c
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---F  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~  270 (447)
                                                                              +..+.++|+|||++......   .
T Consensus       134 --------------------------------------------------------~~~~~~kl~Dfg~a~~~~~~~~~~  157 (324)
T 3mtl_A          134 --------------------------------------------------------NERGELKLADFGLARAKSIPTKTY  157 (324)
T ss_dssp             --------------------------------------------------------CTTCCEEECSSSEEECC-------
T ss_pred             --------------------------------------------------------CCCCCEEEccCcccccccCCcccc
Confidence                                                                    34567999999999754422   2


Q ss_pred             ccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 AEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      ...++|+.|+|||++.+ ..++.++|||||||++|+|++|..||.+.      .....+..+.+..|..+..........
T Consensus       158 ~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~  231 (324)
T 3mtl_A          158 DNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGS------TVEEQLHFIFRILGTPTEETWPGILSN  231 (324)
T ss_dssp             -----CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCCCCTTTSTTGGGC
T ss_pred             ccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhCCCChHhchhhhcc
Confidence            33478999999999987 46899999999999999999999999876      467788888888888775432211111


Q ss_pred             cchhcccchhhhhhhcccC--chhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCCcccccc
Q 013220          350 KDYFDRHGDLKRIRRLKFW--SLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKN  427 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~~~~~~~  427 (447)
                      ..+          ....+.  .......    ....++..+.+||.+||+.||++|||++|+|+||||............
T Consensus       232 ~~~----------~~~~~~~~~~~~~~~----~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~~~~~~~  297 (324)
T 3mtl_A          232 EEF----------KTYNYPKYRAEALLS----HAPRLDSDGADLLTKLLQFEGRNRISAEDAMKHPFFLSLGERIHKLPD  297 (324)
T ss_dssp             HHH----------HHTCCCCCCCCCHHH----HCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGCSTTSSSCT
T ss_pred             hhh----------cccccccccchhhhh----hcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcChhhhhcccccccCCC
Confidence            100          000000  0011111    122346688999999999999999999999999999987655444433


Q ss_pred             c
Q 013220          428 K  428 (447)
Q Consensus       428 ~  428 (447)
                      .
T Consensus       298 ~  298 (324)
T 3mtl_A          298 T  298 (324)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=7.3e-45  Score=363.64  Aligned_cols=252  Identities=27%  Similarity=0.403  Sum_probs=214.3

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      -++|++.+.||+|+||.||+|++..+++.||+|++....    ...+.+.+|+++++.+      +|+||+++++++.. 
T Consensus        40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~~~~~~-  112 (350)
T 1rdq_E           40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAV------NFPFLVKLEFSFKD-  112 (350)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTC------CCTTBCCEEEEEEC-
T ss_pred             HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhC------CCCCCCeEEEEEEc-
Confidence            378999999999999999999999999999999987653    2345678899999888      89999999999885 


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                         ...+|+||||+ +++|.+.+...  ..+++..++.++.||+.||+|||++ ||+||||||+||++            
T Consensus       113 ---~~~~~lv~e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-~ivHrDlkp~NIll------------  174 (350)
T 1rdq_E          113 ---NSNLYMVMEYVAGGEMFSHLRRI--GRFSEPHARFYAAQIVLTFEYLHSL-DLIYRDLKPENLLI------------  174 (350)
T ss_dssp             ---SSEEEEEEECCTTCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEE------------
T ss_pred             ---CCEEEEEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CcccccCccceEEE------------
Confidence               36899999999 88999988754  3489999999999999999999996 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                  +..+.+||+|||++......
T Consensus       175 ------------------------------------------------------------~~~g~~kL~DFg~a~~~~~~  194 (350)
T 1rdq_E          175 ------------------------------------------------------------DQQGYIQVTDFGFAKRVKGR  194 (350)
T ss_dssp             ------------------------------------------------------------CTTSCEEECCCTTCEECSSC
T ss_pred             ------------------------------------------------------------CCCCCEEEcccccceeccCC
Confidence                                                                        44678999999999877666


Q ss_pred             cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          270 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      ....+||+.|+|||++.+..++.++|||||||++|+|++|..||...+      ......                    
T Consensus       195 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~------~~~~~~--------------------  248 (350)
T 1rdq_E          195 TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ------PIQIYE--------------------  248 (350)
T ss_dssp             BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHH--------------------
T ss_pred             cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCC------HHHHHH--------------------
Confidence            566789999999999999899999999999999999999999997542      111111                    


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCC-----hHHHhcCccccccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLRN  419 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpt-----a~elL~hp~f~~~~  419 (447)
                                            .+......++...+..+.+||.+||+.||++||+     ++|+++||||+..+
T Consensus       249 ----------------------~i~~~~~~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~h~~f~~~~  301 (350)
T 1rdq_E          249 ----------------------KIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTD  301 (350)
T ss_dssp             ----------------------HHHHCCCCCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTSGGGTTCC
T ss_pred             ----------------------HHHcCCCCCCCCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHhCcCcCCCC
Confidence                                  1222223345566778999999999999999998     99999999998653

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=1.9e-44  Score=361.99  Aligned_cols=263  Identities=24%  Similarity=0.381  Sum_probs=203.0

Q ss_pred             cCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           29 VGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        29 ~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      +......++|++.++||+|+||+||+|++..+++.||+|++.........+.+|+.+++.+      .|+||+++++++.
T Consensus        13 ~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l------~hpniv~~~~~~~   86 (361)
T 3uc3_A           13 MPIMHDSDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSL------RHPNIVRFKEVIL   86 (361)
T ss_dssp             CCCCCCTTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSCHHHHHHHHHHHHC------CCTTBCCEEEEEE
T ss_pred             ccCCCCCCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccccHHHHHHHHHHHhC------CCCCCCcEEEEEe
Confidence            3344456899999999999999999999999999999999887665567788999999999      7999999999988


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCc
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                      ..    ...++||||+ +++|.+.+...  ..+++..++.++.|++.||+|||++ ||+||||||+||++..        
T Consensus        87 ~~----~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~ql~~~L~~LH~~-~ivH~Dlkp~Nill~~--------  151 (361)
T 3uc3_A           87 TP----THLAIIMEYASGGELYERICNA--GRFSEDEARFFFQQLLSGVSYCHSM-QICHRDLKLENTLLDG--------  151 (361)
T ss_dssp             CS----SEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TCCSCCCCGGGEEECS--------
T ss_pred             eC----CEEEEEEEeCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEEcC--------
Confidence            53    6899999999 88999888654  3499999999999999999999996 9999999999999943        


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                    +....+||+|||++....
T Consensus       152 --------------------------------------------------------------~~~~~~kl~Dfg~a~~~~  169 (361)
T 3uc3_A          152 --------------------------------------------------------------SPAPRLKICDFGYSKSSV  169 (361)
T ss_dssp             --------------------------------------------------------------SSSCCEEECCCCCC----
T ss_pred             --------------------------------------------------------------CCCceEEEeecCcccccc
Confidence                                                                          223459999999986432


Q ss_pred             --cccccCCCCCCccChHHhhcCCCCcc-chhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhh
Q 013220          268 --KQFAEEIQTRQYRAPEVILRAGYSFS-VDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  344 (447)
Q Consensus       268 --~~~~~~~gt~~y~aPE~l~~~~~~~~-~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (447)
                        ......+||+.|+|||++.+..++.+ +|||||||++|+|++|..||.......     .....+..+.         
T Consensus       170 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~-----~~~~~~~~~~---------  235 (361)
T 3uc3_A          170 LHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPR-----DYRKTIQRIL---------  235 (361)
T ss_dssp             -----------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CC-----CHHHHHHHHH---------
T ss_pred             ccCCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHH-----HHHHHHHHHh---------
Confidence              23344579999999999998887655 999999999999999999997653211     1111111111         


Q ss_pred             CCCCccchhcccchhhhhhhcccCchhHHhhhhcCCCh--hhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          345 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSE--TDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                                                    .....++.  ..+..+.+||.+||+.||++|||++|+|+||||...
T Consensus       236 ------------------------------~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~  281 (361)
T 3uc3_A          236 ------------------------------SVKYSIPDDIRISPECCHLISRIFVADPATRISIPEIKTHSWFLKN  281 (361)
T ss_dssp             ------------------------------TTCCCCCTTSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTSHHHHTT
T ss_pred             ------------------------------cCCCCCCCcCCCCHHHHHHHHHHccCChhHCcCHHHHHhCcchhcC
Confidence                                          11111111  346788999999999999999999999999999654

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=2.2e-44  Score=361.71  Aligned_cols=272  Identities=26%  Similarity=0.375  Sum_probs=212.2

Q ss_pred             CCCCccccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCC
Q 013220           20 RKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSN   96 (447)
Q Consensus        20 ~~~~~~~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~   96 (447)
                      ..+....+..+..+. ++|++.+.||+|+||+||+|.+..++..||+|++....   ...+.+.+|+++++.+      .
T Consensus        14 ~~~~~~~~~~~~~~~-~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l------~   86 (362)
T 2bdw_A           14 GRGSEFMMNASTKFS-DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKL------Q   86 (362)
T ss_dssp             ----------CCHHH-HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHC------C
T ss_pred             cCCceEeecCCCCcc-cCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhC------C
Confidence            334445555666665 78999999999999999999999999999999886542   3346788999999999      7


Q ss_pred             cceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCe
Q 013220           97 EKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENI  175 (447)
Q Consensus        97 ~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Ni  175 (447)
                      |+||+++++++...    ...|+||||+ +++|.+.+...  ..+++..+..++.||+.||+|||++ ||+||||||+||
T Consensus        87 hpnIv~~~~~~~~~----~~~~lv~e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~lH~~-~ivH~Dlkp~NI  159 (362)
T 2bdw_A           87 HPNIVRLHDSIQEE----SFHYLVFDLVTGGELFEDIVAR--EFYSEADASHCIQQILESIAYCHSN-GIVHRNLKPENL  159 (362)
T ss_dssp             CTTBCCEEEEEECS----SEEEEEECCCCSCBHHHHHTTC--SCCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCSGGGE
T ss_pred             CCCCCeEEEEEEeC----CEEEEEEecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEeccCchHHE
Confidence            99999999998753    6899999999 88998888643  3589999999999999999999997 999999999999


Q ss_pred             EeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccce
Q 013220          176 LLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRC  255 (447)
Q Consensus       176 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (447)
                      ++...                                                                     .....+
T Consensus       160 ll~~~---------------------------------------------------------------------~~~~~~  170 (362)
T 2bdw_A          160 LLASK---------------------------------------------------------------------AKGAAV  170 (362)
T ss_dssp             EESCS---------------------------------------------------------------------STTCCE
T ss_pred             EEecC---------------------------------------------------------------------CCCCCE
Confidence            99431                                                                     123569


Q ss_pred             eEeecCcccccccc--cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHH
Q 013220          256 KVVDFGNACRANKQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMME  333 (447)
Q Consensus       256 kL~Dfg~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~  333 (447)
                      ||+|||++......  ....+||+.|+|||++.+..++.++|||||||++|+|++|..||...+      .......+..
T Consensus       171 kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~------~~~~~~~i~~  244 (362)
T 2bdw_A          171 KLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDED------QHRLYAQIKA  244 (362)
T ss_dssp             EECCCTTCBCCTTCCSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHH
T ss_pred             EEeecCcceEecCCcccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCC------HHHHHHHHHh
Confidence            99999999765433  234589999999999999899999999999999999999999997652      2222222211


Q ss_pred             HhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCc
Q 013220          334 LIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP  413 (447)
Q Consensus       334 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp  413 (447)
                      ..-..+.                                      .....++.++.+||.+||+.||++|||+.|+|+||
T Consensus       245 ~~~~~~~--------------------------------------~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp  286 (362)
T 2bdw_A          245 GAYDYPS--------------------------------------PEWDTVTPEAKSLIDSMLTVNPKKRITADQALKVP  286 (362)
T ss_dssp             TCCCCCT--------------------------------------TGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTTSH
T ss_pred             CCCCCCc--------------------------------------ccccCCCHHHHHHHHHHcCCChhhCcCHHHHhcCc
Confidence            1000000                                      00123467899999999999999999999999999


Q ss_pred             ccccc
Q 013220          414 WLSLR  418 (447)
Q Consensus       414 ~f~~~  418 (447)
                      ||...
T Consensus       287 ~~~~~  291 (362)
T 2bdw_A          287 WICNR  291 (362)
T ss_dssp             HHHTH
T ss_pred             ccCCC
Confidence            99854

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=3.2e-44  Score=363.19  Aligned_cols=295  Identities=21%  Similarity=0.276  Sum_probs=208.7

Q ss_pred             CCceEEEEeeccc--CceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           35 GGRYIAQRKLGWG--QFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        35 ~~~y~l~~~lG~G--~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      +++|++.++||+|  +||+||+|++..+++.||||++....   ...+.+.+|+++++.+      .|+||+++++++..
T Consensus        24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~~~~~~~~   97 (389)
T 3gni_B           24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLF------NHPNIVPYRATFIA   97 (389)
T ss_dssp             GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHC------CCTTBCCEEEEEEE
T ss_pred             CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhC------CCCCCCcEeEEEEE
Confidence            5899999999999  99999999999999999999887543   3456788899999999      79999999999985


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                      .    ..+++||||| +++|.+++.......+++..++.++.||+.||+|||++ ||+||||||+|||+           
T Consensus        98 ~----~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~-~ivHrDlkp~NIll-----------  161 (389)
T 3gni_B           98 D----NELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHM-GYVHRSVKASHILI-----------  161 (389)
T ss_dssp             T----TEEEEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEE-----------
T ss_pred             C----CEEEEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEE-----------
Confidence            4    6899999999 88999998776556699999999999999999999996 99999999999999           


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc-
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN-  267 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~-  267 (447)
                                                                                   +..+.++|+|||.+.... 
T Consensus       162 -------------------------------------------------------------~~~~~~kl~dfg~~~~~~~  180 (389)
T 3gni_B          162 -------------------------------------------------------------SVDGKVYLSGLRSNLSMIS  180 (389)
T ss_dssp             -------------------------------------------------------------CTTCCEEECCGGGCEECEE
T ss_pred             -------------------------------------------------------------cCCCCEEEcccccceeecc
Confidence                                                                         445689999999875432 


Q ss_pred             ---------cccccCCCCCCccChHHhhc--CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhC
Q 013220          268 ---------KQFAEEIQTRQYRAPEVILR--AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIG  336 (447)
Q Consensus       268 ---------~~~~~~~gt~~y~aPE~l~~--~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g  336 (447)
                               ......+||+.|+|||++.+  ..++.++|||||||++|+|++|..||.+.+..      ..+..+.  .+
T Consensus       181 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~------~~~~~~~--~~  252 (389)
T 3gni_B          181 HGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPAT------QMLLEKL--NG  252 (389)
T ss_dssp             TTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCST------THHHHC-----
T ss_pred             ccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHH------HHHHHHh--cC
Confidence                     11223478999999999987  57899999999999999999999999765421      1111111  11


Q ss_pred             CCCHHhhhCCCCccchhcccc------hhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHh
Q 013220          337 KMPRKIAIGGAQSKDYFDRHG------DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCL  410 (447)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL  410 (447)
                      ..+..+...............      ......................++...+..+.+||.+||+.||++|||++|+|
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell  332 (389)
T 3gni_B          253 TVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLL  332 (389)
T ss_dssp             -----------------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHT
T ss_pred             CCCccccccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHh
Confidence            111100000000000000000      00000000000000000011124455678899999999999999999999999


Q ss_pred             cCcccccccC
Q 013220          411 QHPWLSLRNS  420 (447)
Q Consensus       411 ~hp~f~~~~~  420 (447)
                      +||||+....
T Consensus       333 ~hp~f~~~~~  342 (389)
T 3gni_B          333 NHSFFKQIKR  342 (389)
T ss_dssp             TSGGGGGC--
T ss_pred             cCHHHHHHhh
Confidence            9999997654

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=6.7e-44  Score=355.98  Aligned_cols=262  Identities=24%  Similarity=0.361  Sum_probs=212.4

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      -++|++.+.||+|+||.||+|++..+++.||+|+++...    ...+.+.+|.++++.+.     +|+||++++++|...
T Consensus         8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~-----~hp~iv~l~~~~~~~   82 (345)
T 3a8x_A            8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQAS-----NHPFLVGLHSCFQTE   82 (345)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTT-----TCTTBCCEEEEEECS
T ss_pred             hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcC-----CCCccCeEEEEEEeC
Confidence            378999999999999999999999999999999987542    33456788999998874     799999999998753


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                          ..+|+||||+ +++|...+...  ..+++..++.++.||+.||+|||++ ||+||||||+||++            
T Consensus        83 ----~~~~lv~e~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~~-~ivHrDlkp~NIll------------  143 (345)
T 3a8x_A           83 ----SRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLHER-GIIYRDLKLDNVLL------------  143 (345)
T ss_dssp             ----SEEEEEECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCGGGEEE------------
T ss_pred             ----CEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CceecCCCHHHEEE------------
Confidence                6899999999 88999888654  3599999999999999999999996 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc--
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--  267 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~--  267 (447)
                                                                                  +..+.+||+|||++....  
T Consensus       144 ------------------------------------------------------------~~~g~~kL~DFG~a~~~~~~  163 (345)
T 3a8x_A          144 ------------------------------------------------------------DSEGHIKLTDYGMCKEGLRP  163 (345)
T ss_dssp             ------------------------------------------------------------CTTSCEEECCGGGCBCSCCT
T ss_pred             ------------------------------------------------------------CCCCCEEEEeccccccccCC
Confidence                                                                        446789999999997532  


Q ss_pred             -cccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCC
Q 013220          268 -KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  346 (447)
Q Consensus       268 -~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  346 (447)
                       ......+||+.|+|||++.+..++.++|+|||||++|+|++|..||......... .......+               
T Consensus       164 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~-~~~~~~~~---------------  227 (345)
T 3a8x_A          164 GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNP-DQNTEDYL---------------  227 (345)
T ss_dssp             TCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC--------CHHHH---------------
T ss_pred             CCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCccccccc-ccccHHHH---------------
Confidence             2334568999999999999989999999999999999999999999653211100 00000000               


Q ss_pred             CCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCCh------HHHhcCccccccc
Q 013220          347 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA------QQCLQHPWLSLRN  419 (447)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta------~elL~hp~f~~~~  419 (447)
                                             ...+......++...+..+.+||.+||+.||++||++      +|+++||||+..+
T Consensus       228 -----------------------~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~~i~~hp~f~~~~  283 (345)
T 3a8x_A          228 -----------------------FQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVD  283 (345)
T ss_dssp             -----------------------HHHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCCTTTHHHHHHTSGGGTTCC
T ss_pred             -----------------------HHHHHcCCCCCCCCCCHHHHHHHHHHhcCCHhHCCCCCCcCCHHHHhcCCccCCCC
Confidence                                   1122233344566678899999999999999999996      8999999998653

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=2.5e-44  Score=362.00  Aligned_cols=288  Identities=29%  Similarity=0.465  Sum_probs=211.9

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      .++|++.+.||+|+||+||+|.+..+++.||||++...   ......+.+|+++++.+      .|+||+++++++....
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l------~hpnIv~~~~~~~~~~  101 (367)
T 2fst_X           28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHM------KHENVIGLLDVFTPAR  101 (367)
T ss_dssp             ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHC------CCTTBCCCSEEECSCS
T ss_pred             CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhC------CCCCCCcEEEEEecCC
Confidence            37999999999999999999999999999999987542   23456788999999999      7899999999987532


Q ss_pred             --CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          112 --PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       112 --~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                        ......|+|||+++++|.+++..   ..+++..+..++.||+.||+|||++ ||+||||||+||++            
T Consensus       102 ~~~~~~~~~lv~e~~~~~L~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~-givH~Dlkp~NIll------------  165 (367)
T 2fst_X          102 SLEEFNDVYLVTHLMGADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSA-DIIHRDLKPSNLAV------------  165 (367)
T ss_dssp             SGGGCCCCEEEEECCCEECC--------CCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEE------------
T ss_pred             ccccCCeEEEEecccCCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC-CeeeCCCCHhhEEE------------
Confidence              12356899999999898888754   3589999999999999999999996 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                  +.++.+||+|||++......
T Consensus       166 ------------------------------------------------------------~~~~~~kL~DFG~a~~~~~~  185 (367)
T 2fst_X          166 ------------------------------------------------------------NEDCELKILDFGLARHTADE  185 (367)
T ss_dssp             ------------------------------------------------------------CTTCCEEECC----------
T ss_pred             ------------------------------------------------------------CCCCCEEEeecccccccccc
Confidence                                                                        44567999999999877666


Q ss_pred             cccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          270 FAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      ....+||+.|+|||++.+ ..++.++|||||||++|+|++|+.||.+.      ....++..+.+.+|..+..+......
T Consensus       186 ~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~------~~~~~l~~i~~~~g~p~~~~~~~~~~  259 (367)
T 2fst_X          186 MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT------DHIDQLKLILRLVGTPGAELLKKISS  259 (367)
T ss_dssp             -----CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCSCCHHHHTTCCC
T ss_pred             CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhCCCCHHHHHHhhh
Confidence            667789999999999987 57899999999999999999999999876      47788899999999988776433221


Q ss_pred             cc--chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCCcc
Q 013220          349 SK--DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRD  423 (447)
Q Consensus       349 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~~~  423 (447)
                      ..  .+...      ........+...       ....++.+.+||.+||+.||++|||++|+|+||||+.......
T Consensus       260 ~~~~~~~~~------~~~~~~~~~~~~-------~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~hp~~~~~~~~~~  323 (367)
T 2fst_X          260 ESARNYIQS------LTQMPKMNFANV-------FIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHDPDD  323 (367)
T ss_dssp             HHHHHHHHT------SCCCCCCCHHHH-------TTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCCGGG
T ss_pred             HHHHHHHhc------cCCCCCCCHHHH-------CCCCCHHHHHHHHHhCCCCcccCcCHHHHhcChhhhhccCCCC
Confidence            10  00000      000000111111       1234568899999999999999999999999999998765443

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=3.4e-44  Score=354.91  Aligned_cols=259  Identities=28%  Similarity=0.442  Sum_probs=210.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH-------hHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ-------FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~-------~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      ++|++.+.||+|+||+||+|++..++..||+|+++....       ..+.+.+|+++++.+      .|+||+++++++.
T Consensus        11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~~~~~   84 (326)
T 2y0a_A           11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEI------QHPNVITLHEVYE   84 (326)
T ss_dssp             HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHC------CCTTBCCEEEEEE
T ss_pred             cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhC------CCCCCCcEEEEEE
Confidence            689999999999999999999999999999998765421       246788999999999      7899999999987


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCc
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                      .    ....++||||+ +++|.+++...  ..+++..+..++.||+.||+|||++ ||+||||||+||++....      
T Consensus        85 ~----~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~al~~lH~~-~ivH~Dlkp~NIll~~~~------  151 (326)
T 2y0a_A           85 N----KTDVILILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSL-QIAHFDLKPENIMLLDRN------  151 (326)
T ss_dssp             C----SSEEEEEEECCCSCBHHHHHTTS--SCCBHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEESCSS------
T ss_pred             e----CCEEEEEEEcCCCCCHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHHC-CeEcCCCCHHHEEEecCC------
Confidence            5    36899999999 88999988643  4589999999999999999999996 999999999999994310      


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                    .....+||+|||++....
T Consensus       152 --------------------------------------------------------------~~~~~~kl~Dfg~a~~~~  169 (326)
T 2y0a_A          152 --------------------------------------------------------------VPKPRIKIIDFGLAHKID  169 (326)
T ss_dssp             --------------------------------------------------------------SSSCCEEECCCTTCEECC
T ss_pred             --------------------------------------------------------------CCCCCEEEEECCCCeECC
Confidence                                                                          112369999999997654


Q ss_pred             --cccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          268 --KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       268 --~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                        ......+||+.|+|||++.+..++.++|||||||++|+|++|..||...+      ....+..+.......+...   
T Consensus       170 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~---  240 (326)
T 2y0a_A          170 FGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDT------KQETLANVSAVNYEFEDEY---  240 (326)
T ss_dssp             TTSCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSS------HHHHHHHHHHTCCCCCHHH---
T ss_pred             CCCccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCC------HHHHHHHHHhcCCCcCccc---
Confidence              23345679999999999998899999999999999999999999997652      2222222222111111110   


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                         ....+..+.+||.+||+.||++|||++|+|+||||+...
T Consensus       241 -----------------------------------~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  279 (326)
T 2y0a_A          241 -----------------------------------FSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWIKPKD  279 (326)
T ss_dssp             -----------------------------------HTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHSTTTSCCS
T ss_pred             -----------------------------------cccCCHHHHHHHHHHccCChhhCCCHHHHhcCCCccCCc
Confidence                                               122356889999999999999999999999999998654

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=1.9e-44  Score=361.15  Aligned_cols=253  Identities=23%  Similarity=0.341  Sum_probs=211.0

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      -++|++.+.||+|+||.||+|++..+++.||+|+++...    ...+.+..|.+++..+.     +|++|++++++|...
T Consensus        19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~-----~hp~iv~l~~~~~~~   93 (353)
T 2i0e_A           19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPG-----KPPFLTQLHSCFQTM   93 (353)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTT-----CCTTBCCEEEEEECS
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcC-----CCCEEeeEEEEEEcC
Confidence            378999999999999999999999999999999987653    23456777888887664     789999999998753


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                          ..+|+||||+ |++|.+++...  ..+++..++.++.||+.||+|||++ ||+||||||+||++            
T Consensus        94 ----~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-givHrDlkp~NIll------------  154 (353)
T 2i0e_A           94 ----DRLYFVMEYVNGGDLMYHIQQV--GRFKEPHAVFYAAEIAIGLFFLQSK-GIIYRDLKLDNVML------------  154 (353)
T ss_dssp             ----SEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCGGGEEE------------
T ss_pred             ----CEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CEEeccCCHHHEEE------------
Confidence                6899999999 88999988754  3499999999999999999999996 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc--
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--  267 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~--  267 (447)
                                                                                  +..+.+||+|||++....  
T Consensus       155 ------------------------------------------------------------~~~g~vkL~DFG~a~~~~~~  174 (353)
T 2i0e_A          155 ------------------------------------------------------------DSEGHIKIADFGMCKENIWD  174 (353)
T ss_dssp             ------------------------------------------------------------CTTSCEEECCCTTCBCCCCT
T ss_pred             ------------------------------------------------------------cCCCcEEEEeCCcccccccC
Confidence                                                                        446789999999997532  


Q ss_pred             -cccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCC
Q 013220          268 -KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  346 (447)
Q Consensus       268 -~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  346 (447)
                       ......+||+.|+|||++.+..++.++|+|||||++|+|++|..||...+      ......                 
T Consensus       175 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~------~~~~~~-----------------  231 (353)
T 2i0e_A          175 GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGED------EDELFQ-----------------  231 (353)
T ss_dssp             TCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHH-----------------
T ss_pred             CcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCC------HHHHHH-----------------
Confidence             23345689999999999999899999999999999999999999997642      111111                 


Q ss_pred             CCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCC-----hHHHhcCccccccc
Q 013220          347 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLRN  419 (447)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpt-----a~elL~hp~f~~~~  419 (447)
                                               .+......++...+.++.+||.+||+.||++||+     ++++++||||+..+
T Consensus       232 -------------------------~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~h~~f~~~~  284 (353)
T 2i0e_A          232 -------------------------SIMEHNVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYID  284 (353)
T ss_dssp             -------------------------HHHHCCCCCCTTSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHTSGGGTTCC
T ss_pred             -------------------------HHHhCCCCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCccccCCC
Confidence                                     2222333455666789999999999999999994     69999999998653

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=5.3e-44  Score=368.37  Aligned_cols=257  Identities=25%  Similarity=0.351  Sum_probs=208.7

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.++||+|+||+||+|.+..+++.||+|++...   ....+.+.+|+++++.+      +||||+++++++..   
T Consensus        11 ~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l------~hpnIv~l~~~~~~---   81 (444)
T 3soa_A           11 EEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLL------KHPNIVRLHDSISE---   81 (444)
T ss_dssp             HHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHC------CBTTBCCEEEEEEC---
T ss_pred             CCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhC------CCcCCCeEEEEEEE---
Confidence            6899999999999999999999999999999987643   23456788999999999      79999999999875   


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                       ....|+||||| +++|.+.+...  ..+++..+..++.||+.||+|||++ ||+||||||+||++...           
T Consensus        82 -~~~~~lv~E~~~gg~L~~~i~~~--~~~~e~~~~~i~~qil~aL~~lH~~-givHrDlKp~NIll~~~-----------  146 (444)
T 3soa_A           82 -EGHHYLIFDLVTGGELFEDIVAR--EYYSEADASHCIQQILEAVLHCHQM-GVVHRNLKPENLLLASK-----------  146 (444)
T ss_dssp             -SSEEEEEECCCBCCBHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCSSTTEEESBS-----------
T ss_pred             -CCEEEEEEEeCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCCHHHEEEecc-----------
Confidence             47899999999 88999888754  4599999999999999999999997 99999999999999431           


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                .....+||+|||++......  
T Consensus       147 ----------------------------------------------------------~~~~~vkL~DFG~a~~~~~~~~  168 (444)
T 3soa_A          147 ----------------------------------------------------------LKGAAVKLADFGLAIEVEGEQQ  168 (444)
T ss_dssp             ----------------------------------------------------------STTCCEEECCCSSCBCCCTTCC
T ss_pred             ----------------------------------------------------------CCCCcEEEccCceeEEecCCCc
Confidence                                                                      13467999999999765433  


Q ss_pred             -cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          270 -FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       270 -~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                       ....+||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+      .......+.......+.        
T Consensus       169 ~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~------~~~~~~~i~~~~~~~~~--------  234 (444)
T 3soa_A          169 AWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDED------QHRLYQQIKAGAYDFPS--------  234 (444)
T ss_dssp             BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHTCCCCCT--------
T ss_pred             eeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCcc------HHHHHHHHHhCCCCCCc--------
Confidence             234579999999999999899999999999999999999999997652      22222222211111110        


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                                                    .....+++++.+||.+||+.||++|||++|+|+||||+..
T Consensus       235 ------------------------------~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~hp~~~~~  274 (444)
T 3soa_A          235 ------------------------------PEWDTVTPEAKDLINKMLTINPSKRITAAEALKHPWISHR  274 (444)
T ss_dssp             ------------------------------TTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSCTTHHH
T ss_pred             ------------------------------cccccCCHHHHHHHHHHcCCChhHCCCHHHHhcCccccCC
Confidence                                          0112346789999999999999999999999999999864

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=4.1e-44  Score=364.56  Aligned_cols=276  Identities=25%  Similarity=0.358  Sum_probs=209.0

Q ss_pred             CccccccCccccCCceEEE-EeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceee
Q 013220           23 GYHAVRVGDLFNGGRYIAQ-RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVI  101 (447)
Q Consensus        23 ~~~~~~~g~~~~~~~y~l~-~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv  101 (447)
                      ....+..|.++.  +|.+. +.||.|+||+||+|++..+++.||||++...    ..+.+|++++..+.     .|+||+
T Consensus        50 ~~~~~~~~~~~~--~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~E~~~~~~~~-----~hp~iv  118 (400)
T 1nxk_A           50 SGLQIKKNAIID--DYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC----PKARREVELHWRAS-----QCPHIV  118 (400)
T ss_dssp             ECCCCBCSCGGG--TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS----HHHHHHHHHHHHHT-----TSTTBC
T ss_pred             cccccCCCcccc--cceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc----hhHHHHHHHHHHhc-----CCCCcc
Confidence            344566677774  57776 7899999999999999999999999998743    34678888886654     799999


Q ss_pred             eecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeec
Q 013220          102 RLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVST  180 (447)
Q Consensus       102 ~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~  180 (447)
                      +++++|.....+..++|+||||| +++|.+.+.......+++..+..++.||+.||+|||++ ||+||||||+||+++..
T Consensus       119 ~l~~~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~ivHrDlkp~Nill~~~  197 (400)
T 1nxk_A          119 RIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI-NIAHRDVKPENLLYTSK  197 (400)
T ss_dssp             CEEEEEEEEETTEEEEEEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEESSS
T ss_pred             eEeEEEeecccCCcEEEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC-CccccCcCcceEEEecC
Confidence            99999876544567899999999 88999998764444699999999999999999999996 99999999999999431


Q ss_pred             CCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeec
Q 013220          181 IDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDF  260 (447)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Df  260 (447)
                                                                                           ...+.+||+||
T Consensus       198 ---------------------------------------------------------------------~~~~~~kl~DF  208 (400)
T 1nxk_A          198 ---------------------------------------------------------------------RPNAILKLTDF  208 (400)
T ss_dssp             ---------------------------------------------------------------------STTCCEEECCC
T ss_pred             ---------------------------------------------------------------------CCCccEEEEec
Confidence                                                                                 12567999999


Q ss_pred             Cccccccc--ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCC
Q 013220          261 GNACRANK--QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKM  338 (447)
Q Consensus       261 g~a~~~~~--~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~  338 (447)
                      |++.....  .....+||+.|+|||++.+..++.++|||||||++|+|++|..||..........  .....+..  +..
T Consensus       209 G~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~--~~~~~i~~--~~~  284 (400)
T 1nxk_A          209 GFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISP--GMKTRIRM--GQY  284 (400)
T ss_dssp             TTCEECC-----------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCC--SHHHHHHH--TCC
T ss_pred             ccccccCCCCccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccH--HHHHHHHc--Ccc
Confidence            99975542  2345678999999999988899999999999999999999999997664322110  01111110  000


Q ss_pred             CHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          339 PRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                      ..                                    .......++.++.+||.+||+.||++|||++|+|+||||...
T Consensus       285 ~~------------------------------------~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~hp~~~~~  328 (400)
T 1nxk_A          285 EF------------------------------------PNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQS  328 (400)
T ss_dssp             CC------------------------------------CTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHTT
T ss_pred             cC------------------------------------CCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhcCccccCC
Confidence            00                                    000112456789999999999999999999999999999864


Q ss_pred             c
Q 013220          419 N  419 (447)
Q Consensus       419 ~  419 (447)
                      .
T Consensus       329 ~  329 (400)
T 1nxk_A          329 T  329 (400)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=5.2e-44  Score=361.22  Aligned_cols=285  Identities=26%  Similarity=0.464  Sum_probs=222.3

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC---
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG---  111 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~---  111 (447)
                      .++|++.+.||+|+||+||+|++..+++.||||++..+..   ...+|+++++.+      +|+||++++++|....   
T Consensus         6 ~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~---~~~~E~~il~~l------~hpnIv~l~~~~~~~~~~~   76 (383)
T 3eb0_A            6 SKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR---YKNRELDIMKVL------DHVNIIKLVDYFYTTGDEE   76 (383)
T ss_dssp             CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT---SCCHHHHHHTTC------CCTTBCCEEEEEEEC----
T ss_pred             cceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc---hHHHHHHHHHHc------CCCCccchhheeeecCccc
Confidence            4799999999999999999999999999999998765432   345799999998      7999999999986542   


Q ss_pred             -------------------------------CCcceEEEEEecccccHHHHHHh--hccCCCCHHHHHHHHHHHHHHHHH
Q 013220          112 -------------------------------PNGQHLCMVLEFLGDSLLRLIKY--SRYKGLELNKVREICKYILTGLDY  158 (447)
Q Consensus       112 -------------------------------~~~~~~~lvmE~~~~~L~~~~~~--~~~~~l~~~~~~~i~~qil~aL~~  158 (447)
                                                     ....++++||||++++|.+.+..  .....+++..++.++.||+.||+|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~  156 (383)
T 3eb0_A           77 PKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPDTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGF  156 (383)
T ss_dssp             ---------------------------------CCEEEEEECCCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccCCCceEEEEEEecCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence                                           13346999999998788777653  223568999999999999999999


Q ss_pred             HHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCC
Q 013220          159 LHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGG  238 (447)
Q Consensus       159 lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (447)
                      ||++ ||+||||||+||++..                                                           
T Consensus       157 LH~~-gi~H~Dikp~Nil~~~-----------------------------------------------------------  176 (383)
T 3eb0_A          157 IHSL-GICHRDIKPQNLLVNS-----------------------------------------------------------  176 (383)
T ss_dssp             HHTT-TEECSCCCGGGEEEET-----------------------------------------------------------
T ss_pred             HHHC-cCccCccCHHHEEEcC-----------------------------------------------------------
Confidence            9996 9999999999999942                                                           


Q ss_pred             CCCCCCCccCCCcccceeEeecCcccccc--cccccCCCCCCccChHHhhcCC-CCccchhHhHHHHHHHHhhCCCCCCC
Q 013220          239 IELPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAG-YSFSVDMWSFACTAFELATGDMLFAP  315 (447)
Q Consensus       239 ~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~--~~~~~~~gt~~y~aPE~l~~~~-~~~~~DiwSlGvil~~l~~g~~Pf~~  315 (447)
                                  ....+||+|||.+....  .......+|+.|+|||.+.+.. ++.++|||||||++|+|++|..||.+
T Consensus       177 ------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~  244 (383)
T 3eb0_A          177 ------------KDNTLKLCDFGSAKKLIPSEPSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLFSG  244 (383)
T ss_dssp             ------------TTTEEEECCCTTCEECCTTSCCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             ------------CCCcEEEEECCCCcccCCCCCCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCC
Confidence                        24679999999997543  3334567899999999998754 89999999999999999999999987


Q ss_pred             CCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhc
Q 013220          316 KSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPL  395 (447)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~  395 (447)
                      .      .....+..+.+..|..+.+........   +..    ..........+...      ++...+.++.+||.+|
T Consensus       245 ~------~~~~~~~~i~~~~g~p~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~------~~~~~~~~~~~li~~~  305 (383)
T 3eb0_A          245 E------TSIDQLVRIIQIMGTPTKEQMIRMNPH---YTE----VRFPTLKAKDWRKI------LPEGTPSLAIDLLEQI  305 (383)
T ss_dssp             S------SHHHHHHHHHHHHCCCCHHHHHHHCTT---C------CCCCCCCCCCHHHH------SCTTCCHHHHHHHHHH
T ss_pred             C------ChHHHHHHHHHHhCCCCHHHHHHhCcc---ccc----ccCCccCcccHHhh------CCCCCCHHHHHHHHHH
Confidence            6      577888889999998886543211110   000    00000011111111      3445677899999999


Q ss_pred             cccCCCCCCChHHHhcCccccccc
Q 013220          396 LDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       396 L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                      |+.||++|||+.|+|+||||+..+
T Consensus       306 L~~dP~~R~t~~e~l~hp~f~~~~  329 (383)
T 3eb0_A          306 LRYEPDLRINPYEAMAHPFFDHLR  329 (383)
T ss_dssp             CCSSGGGSCCHHHHHTSGGGHHHH
T ss_pred             ccCChhhCCCHHHHhcCHHHHHHH
Confidence            999999999999999999998754

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=9.5e-44  Score=354.99  Aligned_cols=296  Identities=25%  Similarity=0.382  Sum_probs=219.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC---
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP---  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~---  112 (447)
                      ++|++.+.||+|+||+||+|++..+++.||||++..+.........|++.+..+      .|+||++++++|.....   
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~l~~l------~h~niv~~~~~~~~~~~~~~   96 (360)
T 3e3p_A           23 DRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVL------HHPNIVQLQSYFYTLGERDR   96 (360)
T ss_dssp             TTEEEC----------CEEEEETTTCCEEEEEEEECCTTCCCHHHHHHHHHHHH------CCTTBCCEEEEEEEECSSCT
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccccHHHHHHHHHHHhc------CCCCcccHHHhhhccccccc
Confidence            689999999999999999999999999999998876655555677788888888      79999999999876432   


Q ss_pred             CcceEEEEEecccccHHHHHHh--hccCCCCHHHHHHHHHHHHHHHHHHH--hhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          113 NGQHLCMVLEFLGDSLLRLIKY--SRYKGLELNKVREICKYILTGLDYLH--RELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       113 ~~~~~~lvmE~~~~~L~~~~~~--~~~~~l~~~~~~~i~~qil~aL~~lH--~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                      ...++++||||+++++...+..  .....+++..+..++.|++.||+|||  ++ ||+||||||+||+++.         
T Consensus        97 ~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~-~ivH~Dlkp~NIll~~---------  166 (360)
T 3e3p_A           97 RDIYLNVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSV-NVCHRDIKPHNVLVNE---------  166 (360)
T ss_dssp             TCEEEEEEEECCSCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTT-CCBCSCCCGGGEEEET---------
T ss_pred             cceeEEEEeecccccHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCC-CeecCcCCHHHEEEeC---------
Confidence            2335899999997777665542  23345889999999999999999999  86 9999999999999932         


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                    ....+||+|||++.....
T Consensus       167 --------------------------------------------------------------~~~~~kl~Dfg~a~~~~~  184 (360)
T 3e3p_A          167 --------------------------------------------------------------ADGTLKLCDFGSAKKLSP  184 (360)
T ss_dssp             --------------------------------------------------------------TTTEEEECCCTTCBCCCT
T ss_pred             --------------------------------------------------------------CCCcEEEeeCCCceecCC
Confidence                                                                          246799999999976543


Q ss_pred             c--cccCCCCCCccChHHhhcCC-CCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          269 Q--FAEEIQTRQYRAPEVILRAG-YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       269 ~--~~~~~gt~~y~aPE~l~~~~-~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                      .  .....||+.|+|||++.+.. ++.++|||||||++|+|++|..||...      .....+..+.+..+..+..+...
T Consensus       185 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~  258 (360)
T 3e3p_A          185 SEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGD------NSAGQLHEIVRVLGCPSREVLRK  258 (360)
T ss_dssp             TSCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHHHCCCCHHHHHH
T ss_pred             CCCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCC------ChHHHHHHHHHHcCCCCHHHHHh
Confidence            2  33457899999999997654 899999999999999999999999876      57788888899999988776433


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCCcccc
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDET  425 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~~~~~  425 (447)
                      .......+...       ......+...+   .......+.++.+||.+||+.||.+|||+.|+|+||||+.........
T Consensus       259 ~~~~~~~~~~~-------~~~~~~~~~~~---~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~~~~~  328 (360)
T 3e3p_A          259 LNPSHTDVDLY-------NSKGIPWSNVF---SDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCHPYFDELHDPATKL  328 (360)
T ss_dssp             HCTTCCCGGGG-------CCCCCCHHHHT---TTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTSGGGGGGGCTTCCC
T ss_pred             cccchhhcccc-------ccccCCccccc---chhhccccHHHHHHHHHHhccCccccCCHHHHhcCccccccCCccccC
Confidence            22111111000       00001111111   112334678999999999999999999999999999999876555443

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=3.9e-43  Score=338.83  Aligned_cols=265  Identities=26%  Similarity=0.359  Sum_probs=213.3

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.++||+|+||+||+|.+..+++.||+|++....   ...+.+.+|+++++.+      .|+||+++++++..   
T Consensus         6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~---   76 (284)
T 3kk8_A            6 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKL------QHPNIVRLHDSIQE---   76 (284)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHC------CCTTBCCEEEEEEC---
T ss_pred             hhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHc------CCCCcCeEEEEEEc---
Confidence            79999999999999999999999999999999886543   3346778899999999      78999999999874   


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                       ....++||||+ +++|.+.+...  ..+++..+..++.|++.||+|||++ ||+||||||+||++...           
T Consensus        77 -~~~~~~v~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dikp~Nil~~~~-----------  141 (284)
T 3kk8_A           77 -ESFHYLVFDLVTGGELFEDIVAR--EFYSEADASHCIQQILESIAYCHSN-GIVHRNLKPENLLLASK-----------  141 (284)
T ss_dssp             -SSEEEEEECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEESSS-----------
T ss_pred             -CCEEEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CcCcCCCCHHHEEEecC-----------
Confidence             46889999999 78998887654  3489999999999999999999996 99999999999999431           


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc-
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF-  270 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~-  270 (447)
                                                                                .....++|+|||.+....... 
T Consensus       142 ----------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~  163 (284)
T 3kk8_A          142 ----------------------------------------------------------AKGAAVKLADFGLAIEVNDSEA  163 (284)
T ss_dssp             ----------------------------------------------------------STTCCEEECCCTTCEECCSSCB
T ss_pred             ----------------------------------------------------------CCCCcEEEeeceeeEEcccCcc
Confidence                                                                      223459999999997654332 


Q ss_pred             -ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 -AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 -~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                       ....||+.|+|||.+.+..++.++|||||||++|+|++|..||...+      .......+.......+.         
T Consensus       164 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~------~~~~~~~~~~~~~~~~~---------  228 (284)
T 3kk8_A          164 WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDED------QHRLYAQIKAGAYDYPS---------  228 (284)
T ss_dssp             CCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHTCCCCCT---------
T ss_pred             ccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCc------hhHHHHHHHhccccCCc---------
Confidence             34578999999999999899999999999999999999999997642      22222222111101000         


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCCccccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETK  426 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~~~~~~  426 (447)
                                                   ......++++.+||.+||+.||++|||++|+|+||||+..........
T Consensus       229 -----------------------------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~~~~~~~~  276 (284)
T 3kk8_A          229 -----------------------------PEWDTVTPEAKSLIDSMLTVNPKKRITADQALKVPWICNRERVASAIH  276 (284)
T ss_dssp             -----------------------------TTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTTSHHHHSCCCGGGSCC
T ss_pred             -----------------------------hhhcccCHHHHHHHHHHcccChhhCCCHHHHhcCccccCChhHHhHhh
Confidence                                         011234668999999999999999999999999999998765554443

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=4.9e-43  Score=342.84  Aligned_cols=284  Identities=26%  Similarity=0.433  Sum_probs=213.3

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.++||+|+||+||+|++..+++.||+|++....   ...+.+.+|+++++.+      .|+||+++++++...  
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~~--   74 (311)
T 4agu_A            3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQL------KHPNLVNLLEVFRRK--   74 (311)
T ss_dssp             CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHC------CCTTBCCEEEEEEET--
T ss_pred             ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhC------CCCCccchhheeecC--
Confidence            68999999999999999999999999999999875432   3356678899999999      789999999998753  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                        ...++||||+ ++++..++...  ..+++..+..++.|++.||+|||++ ||+||||||+||++              
T Consensus        75 --~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~i~~~l~~~l~~lH~~-~ivH~dlkp~Nil~--------------  135 (311)
T 4agu_A           75 --RRLHLVFEYCDHTVLHELDRYQ--RGVPEHLVKSITWQTLQAVNFCHKH-NCIHRDVKPENILI--------------  135 (311)
T ss_dssp             --TEEEEEEECCSEEHHHHHHHTS--SCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEE--------------
T ss_pred             --CeEEEEEEeCCCchHHHHHhhh--cCCCHHHHHHHHHHHHHHHHHHHHC-CCcCCCCChhhEEE--------------
Confidence              6899999999 55666665533  4589999999999999999999996 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                +....++|+|||.+......  
T Consensus       136 ----------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~  157 (311)
T 4agu_A          136 ----------------------------------------------------------TKHSVIKLCDFGFARLLTGPSD  157 (311)
T ss_dssp             ----------------------------------------------------------CTTSCEEECCCTTCEECC----
T ss_pred             ----------------------------------------------------------cCCCCEEEeeCCCchhccCccc
Confidence                                                                      34567999999999765422  


Q ss_pred             -cccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          270 -FAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       270 -~~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                       ....+||+.|+|||.+.+ ..++.++|||||||++|+|++|..||.+.      ........+.+.++...........
T Consensus       158 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  231 (311)
T 4agu_A          158 YYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGK------SDVDQLYLIRKTLGDLIPRHQQVFS  231 (311)
T ss_dssp             --------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred             ccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhcccccccccccc
Confidence             234578999999999987 56899999999999999999999999776      4666777777777776654321110


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                      .. .++      ................    ....++..+.+||.+||+.||++|||++|+|+||||+.....
T Consensus       232 ~~-~~~------~~~~~~~~~~~~~~~~----~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~~  294 (311)
T 4agu_A          232 TN-QYF------SGVKIPDPEDMEPLEL----KFPNISYPALGLLKGCLHMDPTERLTCEQLLHHPYFENIREI  294 (311)
T ss_dssp             TC-GGG------TTCCCCCCSSCCCHHH----HCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTSGGGTTCC--
T ss_pred             cc-ccc------ccCcCCCccccchhhh----hcccccHHHHHHHHHHccCChhhcCCHHHHhcChHHHhccCH
Confidence            00 000      0000000000000000    012346688999999999999999999999999999976533

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=1.1e-43  Score=354.85  Aligned_cols=263  Identities=28%  Similarity=0.411  Sum_probs=197.2

Q ss_pred             ccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           31 DLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        31 ~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      +.+. ++|++.+.||+|+||+||+|++..+++.||+|+++.... .+.+.+|+++++.+      .|+||+++++++...
T Consensus        49 ~~~~-~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~E~~~l~~l------~h~niv~~~~~~~~~  120 (349)
T 2w4o_A           49 DALS-DFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVD-KKIVRTEIGVLLRL------SHPNIIKLKEIFETP  120 (349)
T ss_dssp             SCGG-GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC-----------CHHHHHC------CCTTBCCEEEEEECS
T ss_pred             cccc-CcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccchh-HHHHHHHHHHHHhC------CCCCCcceeeeEecC
Confidence            3443 789999999999999999999999999999999876542 45688899999999      789999999998753


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                          ...++||||+ +++|.+.+...  ..+++..+..++.|++.||+|||++ ||+||||||+||++...         
T Consensus       121 ----~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~L~~LH~~-~ivH~Dikp~NIll~~~---------  184 (349)
T 2w4o_A          121 ----TEISLVLELVTGGELFDRIVEK--GYYSERDAADAVKQILEAVAYLHEN-GIVHRDLKPENLLYATP---------  184 (349)
T ss_dssp             ----SEEEEEECCCCSCBHHHHHTTC--SSCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEESSS---------
T ss_pred             ----CeEEEEEEeCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEecCCCcccEEEecC---------
Confidence                6899999999 88999888643  3489999999999999999999996 99999999999999431         


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                  +....+||+|||++......
T Consensus       185 ------------------------------------------------------------~~~~~~kl~Dfg~a~~~~~~  204 (349)
T 2w4o_A          185 ------------------------------------------------------------APDAPLKIADFGLSKIVEHQ  204 (349)
T ss_dssp             ------------------------------------------------------------STTCCEEECCCC--------
T ss_pred             ------------------------------------------------------------CCCCCEEEccCccccccCcc
Confidence                                                                        22567999999999755432


Q ss_pred             --cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          270 --FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       270 --~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                        ....+||+.|+|||++.+..++.++|||||||++|+|++|..||....     ........+.......+        
T Consensus       205 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~-----~~~~~~~~i~~~~~~~~--------  271 (349)
T 2w4o_A          205 VLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDER-----GDQFMFRRILNCEYYFI--------  271 (349)
T ss_dssp             --------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTT-----CHHHHHHHHHTTCCCCC--------
T ss_pred             cccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCc-----ccHHHHHHHHhCCCccC--------
Confidence              234578999999999999899999999999999999999999997542     11111111111000000        


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccC
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~  420 (447)
                                                    .......+..+.+||.+||+.||++|||+.|+|+||||+....
T Consensus       272 ------------------------------~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  314 (349)
T 2w4o_A          272 ------------------------------SPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQHPWVTGKAA  314 (349)
T ss_dssp             ------------------------------TTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSTTTTSTTC
T ss_pred             ------------------------------CchhhhCCHHHHHHHHHHccCChhhCcCHHHHhcCcccCCCcc
Confidence                                          0012345678999999999999999999999999999997553

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=1.3e-43  Score=341.82  Aligned_cols=259  Identities=25%  Similarity=0.436  Sum_probs=210.0

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|++.+.||+|+||+||+|++..++..||+|++....    .....+.+|+++++.+      .|+||+++++++... 
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~~-   81 (279)
T 3fdn_A            9 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL------RHPNILRLYGYFHDA-   81 (279)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTC------CCTTBCCEEEEEECS-
T ss_pred             ccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcC------CCCCCcchhheEecC-
Confidence            78999999999999999999999999999999886543    2245678899999888      789999999998753 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                         ...++||||+ +++|.+.+...  ..+++..+..++.|++.||+|||++ ||+||||||+||++             
T Consensus        82 ---~~~~lv~e~~~~~~l~~~l~~~--~~~~~~~~~~~~~qi~~~l~~LH~~-~i~H~dlkp~Nili-------------  142 (279)
T 3fdn_A           82 ---TRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCHSK-RVIHRDIKPENLLL-------------  142 (279)
T ss_dssp             ---SEEEEEECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTT-TCEECCCCGGGEEE-------------
T ss_pred             ---CEEEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CEecccCChHhEEE-------------
Confidence               6899999999 78998888654  3489999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-  269 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-  269 (447)
                                                                                 +..+.++|+|||++...... 
T Consensus       143 -----------------------------------------------------------~~~~~~~l~Dfg~~~~~~~~~  163 (279)
T 3fdn_A          143 -----------------------------------------------------------GSAGELKIADFGWSVHAPSSR  163 (279)
T ss_dssp             -----------------------------------------------------------CTTSCEEECSCCEESCC----
T ss_pred             -----------------------------------------------------------cCCCCEEEEeccccccCCccc
Confidence                                                                       34567999999998654433 


Q ss_pred             cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          270 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      .....|++.|+|||.+.+..++.++|||||||++|+|++|..||...+      .......+.                 
T Consensus       164 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~------~~~~~~~~~-----------------  220 (279)
T 3fdn_A          164 RTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANT------YQETYKRIS-----------------  220 (279)
T ss_dssp             ----CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSS------HHHHHHHHH-----------------
T ss_pred             ccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCc------HHHHHHHHH-----------------
Confidence            344578999999999999889999999999999999999999997542      111111111                 


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCCcccccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKN  427 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~~~~~~~  427 (447)
                                               .....++...++.+.+||.+||+.||++|||++|+|+||||+...+.......
T Consensus       221 -------------------------~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h~~~~~~~~~~~~~~~  273 (279)
T 3fdn_A          221 -------------------------RVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSKPSNCQN  273 (279)
T ss_dssp             -------------------------HTCCCCCTTSCHHHHHHHHHHCCSSGGGSCCHHHHHHCHHHHHHCSSCCCC--
T ss_pred             -------------------------hCCCCCCCcCCHHHHHHHHHHhccChhhCCCHHHHhhCccccCCccCcccccc
Confidence                                     11222444557789999999999999999999999999999987765544443

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=1.2e-43  Score=359.70  Aligned_cols=266  Identities=26%  Similarity=0.415  Sum_probs=213.9

Q ss_pred             cccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh-HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecc
Q 013220           27 VRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA-AQFAQAALHEIEVLSAVADGDPSNEKCVIRLID  105 (447)
Q Consensus        27 ~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~  105 (447)
                      +..|.+.  ++|++.+.||+|+||+||+|.+..+++.||+|++... ......+.+|+++++.+      .|+||+++++
T Consensus        44 ~~~~~~~--~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l------~hpnIv~~~~  115 (387)
T 1kob_A           44 VKQGSVY--DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQL------HHPKLINLHD  115 (387)
T ss_dssp             CBCSCGG--GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTC------CSTTBCCEEE
T ss_pred             ccCCccc--cceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhC------CCcCCCeEEE
Confidence            3456666  5899999999999999999999999999999987654 23345788999999988      7899999999


Q ss_pred             cccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCC
Q 013220          106 HFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       106 ~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~  184 (447)
                      ++..    ....++||||+ +++|.+.+.... ..+++..+..++.||+.||+|||++ ||+||||||+||++..     
T Consensus       116 ~~~~----~~~~~lv~E~~~gg~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~-givHrDlkp~NIll~~-----  184 (387)
T 1kob_A          116 AFED----KYEMVLILEFLSGGELFDRIAAED-YKMSEAEVINYMRQACEGLKHMHEH-SIVHLDIKPENIMCET-----  184 (387)
T ss_dssp             EEEC----SSEEEEEEECCCCCBHHHHTTCTT-CCBCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEESS-----
T ss_pred             EEEe----CCEEEEEEEcCCCCcHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhC-CeeecccchHHeEEec-----
Confidence            9875    36899999999 889988875432 3589999999999999999999996 9999999999999943     


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                       +....+||+|||++.
T Consensus       185 -----------------------------------------------------------------~~~~~vkL~DFG~a~  199 (387)
T 1kob_A          185 -----------------------------------------------------------------KKASSVKIIDFGLAT  199 (387)
T ss_dssp             -----------------------------------------------------------------TTCCCEEECCCTTCE
T ss_pred             -----------------------------------------------------------------CCCCceEEEecccce
Confidence                                                                             224569999999997


Q ss_pred             ccccc--cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh
Q 013220          265 RANKQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  342 (447)
Q Consensus       265 ~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (447)
                      .....  ....+||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+      ....+..+....-..+   
T Consensus       200 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~------~~~~~~~i~~~~~~~~---  270 (387)
T 1kob_A          200 KLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGED------DLETLQNVKRCDWEFD---  270 (387)
T ss_dssp             ECCTTSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSS------HHHHHHHHHHCCCCCC---
T ss_pred             ecCCCcceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCC------HHHHHHHHHhCCCCCC---
Confidence            65432  233478999999999999889999999999999999999999997652      2222222211100000   


Q ss_pred             hhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccC
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~  420 (447)
                                                         ......++.++.+||.+||+.||++|||++|+|+||||+....
T Consensus       271 -----------------------------------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~  313 (387)
T 1kob_A          271 -----------------------------------EDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPWLKGDHS  313 (387)
T ss_dssp             -----------------------------------SSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTSTTTSSCCT
T ss_pred             -----------------------------------ccccccCCHHHHHHHHHHcCCChhHCcCHHHHhhCccccCCcc
Confidence                                               0112345678999999999999999999999999999987543

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=7.1e-44  Score=362.84  Aligned_cols=304  Identities=25%  Similarity=0.347  Sum_probs=212.2

Q ss_pred             CceEEE-EeecccCceEEEEEEeC--CCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQ-RKLGWGQFSIVWLAYDT--RTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~-~~lG~G~~g~Vy~a~~~--~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      +.|.+. ++||+|+||+||+|++.  .+++.||+|++..... ...+.+|+++++.+      .|+||+++++++...  
T Consensus        20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~E~~~l~~l------~hpniv~~~~~~~~~--   90 (405)
T 3rgf_A           20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI-SMSACREIALLREL------KHPNVISLQKVFLSH--   90 (405)
T ss_dssp             HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC-CHHHHHHHHHHHHC------CCTTBCCCCEEEEET--
T ss_pred             hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC-CHHHHHHHHHHHhc------CCCCeeeEeeEEecC--
Confidence            568874 47999999999999965  5689999998875432 34678899999999      799999999998653  


Q ss_pred             CcceEEEEEecccccHHHHHHhhcc-------CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCC
Q 013220          113 NGQHLCMVLEFLGDSLLRLIKYSRY-------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK  185 (447)
Q Consensus       113 ~~~~~~lvmE~~~~~L~~~~~~~~~-------~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~  185 (447)
                      ....+++||||++++|.+++.....       ..+++..++.++.||+.||+|||++ ||+||||||+|||+....    
T Consensus        91 ~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~-~ivH~Dlkp~NIll~~~~----  165 (405)
T 3rgf_A           91 ADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN-WVLHRDLKPANILVMGEG----  165 (405)
T ss_dssp             TTTEEEEEEECCSEEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEECCSS----
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhC-CEeCCCcCHHHeEEecCC----
Confidence            3568999999998888887754321       2389999999999999999999997 999999999999994311    


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccc
Q 013220          186 DPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR  265 (447)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~  265 (447)
                                                                                      +....+||+|||++..
T Consensus       166 ----------------------------------------------------------------~~~~~~kl~Dfg~a~~  181 (405)
T 3rgf_A          166 ----------------------------------------------------------------PERGRVKIADMGFARL  181 (405)
T ss_dssp             ----------------------------------------------------------------TTTTCEEECCTTCCC-
T ss_pred             ----------------------------------------------------------------CCCCcEEEEECCCcee
Confidence                                                                            2346799999999976


Q ss_pred             cccc------cccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCC---CCCCchHHHHHHHHHh
Q 013220          266 ANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQ---GFCEDEDHLALMMELI  335 (447)
Q Consensus       266 ~~~~------~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~---~~~~~~~~~~~~~~~~  335 (447)
                      ....      ....+||+.|+|||++.+. .++.++|||||||++|+|++|..||......   .......++..++..+
T Consensus       182 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~l~~i~~~~  261 (405)
T 3rgf_A          182 FNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVM  261 (405)
T ss_dssp             ---------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCHHHHHHHHHHH
T ss_pred             cCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchHHHHHHHHHhh
Confidence            5422      2345789999999999875 4899999999999999999999999766432   1123467888889999


Q ss_pred             CCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          336 GKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       336 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      |..+...+....+.........+.... ..........+..   .....+..+.+||.+||+.||.+|||++|+|+||||
T Consensus       262 g~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L~hp~f  337 (405)
T 3rgf_A          262 GFPADKDWEDIKKMPEHSTLMKDFRRN-TYTNCSLIKYMEK---HKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYF  337 (405)
T ss_dssp             CCCCTTTCGGGGGSTTHHHHHHHCCGG-GGTTCCHHHHHHT---TTCCTTSHHHHHHHHHSCSSGGGSCCHHHHHTSGGG
T ss_pred             CCCChhhcchhhcCcchhhhhhhcccc-CCCcchhhhhHhh---cCCCCCHHHHHHHHHHccCCcccCCCHHHHhcChhh
Confidence            887765422221111111100000000 0000011111111   111225578899999999999999999999999999


Q ss_pred             ccccCC
Q 013220          416 SLRNST  421 (447)
Q Consensus       416 ~~~~~~  421 (447)
                      +.....
T Consensus       338 ~~~~~~  343 (405)
T 3rgf_A          338 LEDPLP  343 (405)
T ss_dssp             TSSSCC
T ss_pred             ccCCCC
Confidence            876443

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=3.1e-44  Score=349.76  Aligned_cols=253  Identities=24%  Similarity=0.460  Sum_probs=199.0

Q ss_pred             cCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH---------------------------hHHHHHHHHHHH
Q 013220           34 NGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ---------------------------FAQAALHEIEVL   86 (447)
Q Consensus        34 ~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~---------------------------~~~~~~~E~~~l   86 (447)
                      ..++|++.+.||+|+||+||+|++..+++.||+|++.....                           ..+.+.+|++++
T Consensus        11 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l   90 (298)
T 2zv2_A           11 QLNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAIL   90 (298)
T ss_dssp             EETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHH
T ss_pred             eecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHH
Confidence            34799999999999999999999999999999998764321                           134688999999


Q ss_pred             HHhhcCCCCCcceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCc
Q 013220           87 SAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGI  165 (447)
Q Consensus        87 ~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gI  165 (447)
                      +.+      .|+||+++++++...  +....++||||+ +++|.++..   ...+++..+..++.|++.||+|||++ ||
T Consensus        91 ~~l------~h~~iv~~~~~~~~~--~~~~~~lv~e~~~~~~l~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~-~i  158 (298)
T 2zv2_A           91 KKL------DHPNVVKLVEVLDDP--NEDHLYMVFELVNQGPVMEVPT---LKPLSEDQARFYFQDLIKGIEYLHYQ-KI  158 (298)
T ss_dssp             HTC------CCTTBCCEEEEEECS--SSSEEEEEEECCTTCBSCCSSC---SSCCCHHHHHHHHHHHHHHHHHHHHT-TE
T ss_pred             HhC------CCCCCCeEEEEEEcC--CCCEEEEEEecCCCCcHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHHHC-Ce
Confidence            999      789999999998753  356899999999 777765432   24589999999999999999999997 99


Q ss_pred             ccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCC
Q 013220          166 IHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPE  245 (447)
Q Consensus       166 iH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (447)
                      +||||||+||++                                                                    
T Consensus       159 vH~Dlkp~Nil~--------------------------------------------------------------------  170 (298)
T 2zv2_A          159 IHRDIKPSNLLV--------------------------------------------------------------------  170 (298)
T ss_dssp             ECCCCCGGGEEE--------------------------------------------------------------------
T ss_pred             eccCCCHHHEEE--------------------------------------------------------------------
Confidence            999999999999                                                                    


Q ss_pred             ccCCCcccceeEeecCcccccccc---cccCCCCCCccChHHhhcCC---CCccchhHhHHHHHHHHhhCCCCCCCCCCC
Q 013220          246 RCLDGIDMRCKVVDFGNACRANKQ---FAEEIQTRQYRAPEVILRAG---YSFSVDMWSFACTAFELATGDMLFAPKSGQ  319 (447)
Q Consensus       246 ~~~~~~~~~~kL~Dfg~a~~~~~~---~~~~~gt~~y~aPE~l~~~~---~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~  319 (447)
                          +.++.+||+|||++......   .....||+.|+|||.+.+..   ++.++|||||||++|+|++|..||....  
T Consensus       171 ----~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~--  244 (298)
T 2zv2_A          171 ----GEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDER--  244 (298)
T ss_dssp             ----CTTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSS--
T ss_pred             ----CCCCCEEEecCCCccccccccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCcc--
Confidence                34567999999999765432   23457899999999998654   3788999999999999999999996542  


Q ss_pred             CCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccC
Q 013220          320 GFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFT  399 (447)
Q Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~d  399 (447)
                          .......+..  +..                                      ........++.+.+||.+||+.|
T Consensus       245 ----~~~~~~~~~~--~~~--------------------------------------~~~~~~~~~~~l~~li~~~l~~d  280 (298)
T 2zv2_A          245 ----IMCLHSKIKS--QAL--------------------------------------EFPDQPDIAEDLKDLITRMLDKN  280 (298)
T ss_dssp             ----HHHHHHHHHH--CCC--------------------------------------CCCSSSCCCHHHHHHHHHHTCSC
T ss_pred             ----HHHHHHHHhc--ccC--------------------------------------CCCCccccCHHHHHHHHHHhhcC
Confidence                1111111110  000                                      00011234668999999999999


Q ss_pred             CCCCCChHHHhcCcccc
Q 013220          400 PEKRPTAQQCLQHPWLS  416 (447)
Q Consensus       400 P~kRpta~elL~hp~f~  416 (447)
                      |++|||++|+|+||||+
T Consensus       281 p~~R~s~~e~l~hp~~~  297 (298)
T 2zv2_A          281 PESRIVVPEIKLHPWVT  297 (298)
T ss_dssp             TTTSCCHHHHTTCHHHH
T ss_pred             hhhCCCHHHHhcCcccc
Confidence            99999999999999996

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=1.6e-43  Score=358.19  Aligned_cols=260  Identities=25%  Similarity=0.418  Sum_probs=213.6

Q ss_pred             CccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecc
Q 013220           30 GDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLID  105 (447)
Q Consensus        30 g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~  105 (447)
                      +..++.++|++.+.||+|+||.||+|++..+++.||+|++....    ...+.+.+|+++++.+      +|+||+++++
T Consensus         9 ~~~v~~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l------~hp~Iv~l~~   82 (384)
T 4fr4_A            9 NEDVNFDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGL------EHPFLVNLWY   82 (384)
T ss_dssp             CCCCCGGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTC------CCTTBCCEEE
T ss_pred             CCCCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhC------CCCCCCcEEE
Confidence            33444589999999999999999999999999999999887543    2345788899999998      7999999999


Q ss_pred             cccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCC
Q 013220          106 HFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       106 ~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~  184 (447)
                      +|...    ..+|+||||+ +++|..++...  ..+++..++.++.||+.||+|||++ ||+||||||+||++       
T Consensus        83 ~~~~~----~~~~lv~e~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~~-givHrDlkp~NIll-------  148 (384)
T 4fr4_A           83 SFQDE----EDMFMVVDLLLGGDLRYHLQQN--VHFKEETVKLFICELVMALDYLQNQ-RIIHRDMKPDNILL-------  148 (384)
T ss_dssp             EEECS----SEEEEEECCCTTEEHHHHHHTT--CCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEE-------
T ss_pred             EEEeC----CEEEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CceeccCcHHHeEE-------
Confidence            98854    6899999999 88999888754  4599999999999999999999996 99999999999999       


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                       +..+.++|+|||++.
T Consensus       149 -----------------------------------------------------------------~~~g~vkL~DFG~a~  163 (384)
T 4fr4_A          149 -----------------------------------------------------------------DEHGHVHITDFNIAA  163 (384)
T ss_dssp             -----------------------------------------------------------------CTTSCEEECCCTTCE
T ss_pred             -----------------------------------------------------------------CCCCCEEEeccceee
Confidence                                                                             446789999999997


Q ss_pred             ccc--cccccCCCCCCccChHHhhc---CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCC
Q 013220          265 RAN--KQFAEEIQTRQYRAPEVILR---AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMP  339 (447)
Q Consensus       265 ~~~--~~~~~~~gt~~y~aPE~l~~---~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~  339 (447)
                      ...  ......+||+.|+|||++.+   ..++.++|||||||++|+|++|..||...+..    ...   .+.       
T Consensus       164 ~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~----~~~---~~~-------  229 (384)
T 4fr4_A          164 MLPRETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSST----SSK---EIV-------  229 (384)
T ss_dssp             ECCTTCCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTS----CHH---HHH-------
T ss_pred             eccCCCceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCc----cHH---HHH-------
Confidence            653  23345689999999999974   45899999999999999999999999755311    111   111       


Q ss_pred             HHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCC-hHHHhcCcccccc
Q 013220          340 RKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-AQQCLQHPWLSLR  418 (447)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpt-a~elL~hp~f~~~  418 (447)
                                                     ..+......++...+..+.+||.+||+.||++||+ ++++++||||+..
T Consensus       230 -------------------------------~~~~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~~hp~f~~~  278 (384)
T 4fr4_A          230 -------------------------------HTFETTVVTYPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQNFPYMNDI  278 (384)
T ss_dssp             -------------------------------HHHHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSCCSHHHHHTSGGGTTC
T ss_pred             -------------------------------HHHhhcccCCCCcCCHHHHHHHHHHhcCCHhHhcccHHHHHcChhhhcC
Confidence                                           11111222345566789999999999999999998 8999999999876


Q ss_pred             c
Q 013220          419 N  419 (447)
Q Consensus       419 ~  419 (447)
                      +
T Consensus       279 ~  279 (384)
T 4fr4_A          279 N  279 (384)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=3.2e-43  Score=346.99  Aligned_cols=289  Identities=24%  Similarity=0.380  Sum_probs=216.4

Q ss_pred             ccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           33 FNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        33 ~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      .+.++|++.++||+|+||+||+|++..+++.||+|+++...  .+.+.+|+++++.+.     +|+||+++++++...  
T Consensus        33 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~E~~~l~~l~-----~~~~i~~~~~~~~~~--  103 (330)
T 3nsz_A           33 GNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK--KKKIKREIKILENLR-----GGPNIITLADIVKDP--  103 (330)
T ss_dssp             EEGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCC--HHHHHHHHHHHHHHT-----TSTTBCCEEEEEECT--
T ss_pred             cCCCceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccc--hHHHHHHHHHHHHcC-----CCCCEEEeeeeeccC--
Confidence            34588999999999999999999999999999999987543  367889999999995     599999999998753  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                      .....++||||+ +++|..++.     .+++..+..++.|++.||+|||++ ||+||||||+||+++.            
T Consensus       104 ~~~~~~lv~e~~~~~~l~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~Dikp~Nil~~~------------  165 (330)
T 3nsz_A          104 VSRTPALVFEHVNNTDFKQLYQ-----TLTDYDIRFYMYEILKALDYCHSM-GIMHRDVKPHNVMIDH------------  165 (330)
T ss_dssp             TTCCEEEEEECCCCCCHHHHGG-----GCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEET------------
T ss_pred             CCCceEEEEeccCchhHHHHHH-----hCCHHHHHHHHHHHHHHHHHHHhC-CeeeCCCCHHHEEEcC------------
Confidence            356899999999 778877763     388999999999999999999996 9999999999999943            


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc--cc
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQ  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~--~~  269 (447)
                                                                                 ....++|+|||++....  ..
T Consensus       166 -----------------------------------------------------------~~~~~kl~Dfg~a~~~~~~~~  186 (330)
T 3nsz_A          166 -----------------------------------------------------------EHRKLRLIDWGLAEFYHPGQE  186 (330)
T ss_dssp             -----------------------------------------------------------TTTEEEECCCTTCEECCTTCC
T ss_pred             -----------------------------------------------------------CCCEEEEEeCCCceEcCCCCc
Confidence                                                                       12379999999997543  23


Q ss_pred             cccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH-hh-hCC
Q 013220          270 FAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK-IA-IGG  346 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~-~~~  346 (447)
                      .....++..|+|||.+.+ ..++.++|||||||++|+|++|..||....     .....+..+.+..+..... +. ...
T Consensus       187 ~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~  261 (330)
T 3nsz_A          187 YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGH-----DNYDQLVRIAKVLGTEDLYDYIDKYN  261 (330)
T ss_dssp             CCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCS-----SHHHHHHHHHHHHCHHHHHHHHHHTT
T ss_pred             cccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCC-----chHHHHHHHHHhcCCchhhhHHHHhc
Confidence            344578999999999987 568999999999999999999999996543     4555566666555532210 00 111


Q ss_pred             CCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          347 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                      ....+.+...     ........+.....  ......++.++.+||.+||+.||++|||++|+|+||||+...
T Consensus       262 ~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~hp~f~~~~  327 (330)
T 3nsz_A          262 IELDPRFNDI-----LGRHSRKRWERFVH--SENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVV  327 (330)
T ss_dssp             CCCCTHHHHH-----HCCCCCCCGGGGCC--TTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHTSGGGTTCC
T ss_pred             cccccchhhh-----hhhccccchhhhcc--ccccccCCHHHHHHHHHHhcCCcccCCCHHHHhcCccHhhhc
Confidence            0000000000     00000001111100  012233577899999999999999999999999999999754

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=2.5e-43  Score=351.07  Aligned_cols=299  Identities=27%  Similarity=0.388  Sum_probs=225.0

Q ss_pred             ccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeee
Q 013220           26 AVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRL  103 (447)
Q Consensus        26 ~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~  103 (447)
                      |..++..++ ++|++.+.||+|+||+||+|++..+++.||||++...  ......+.+|+++++.+      .|+||+++
T Consensus         2 p~~~~~~i~-~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~   74 (353)
T 2b9h_A            2 PKRIVYNIS-SDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHF------KHENIITI   74 (353)
T ss_dssp             CTTCCCCSC-TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHC------CCTTBCCE
T ss_pred             Ccccccccc-cceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhC------cCCCcCCe
Confidence            445566665 7999999999999999999999999999999988632  33455778999999999      78999999


Q ss_pred             ccccccc-CCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCC
Q 013220          104 IDHFKHA-GPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTID  182 (447)
Q Consensus       104 ~~~~~~~-~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~  182 (447)
                      ++++... .......++||||++++|.+.+..   ..+++..+..++.|++.||+|||++ ||+||||||+||++     
T Consensus        75 ~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~L~~LH~~-~ivH~Dlkp~Nil~-----  145 (353)
T 2b9h_A           75 FNIQRPDSFENFNEVYIIQELMQTDLHRVIST---QMLSDDHIQYFIYQTLRAVKVLHGS-NVIHRDLKPSNLLI-----  145 (353)
T ss_dssp             EEECCCSCSTTCCCEEEEECCCSEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEE-----
T ss_pred             eeeecccccCccceEEEEEeccCccHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHeEE-----
Confidence            9987643 223468999999998899888865   3589999999999999999999996 99999999999999     


Q ss_pred             CCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCc
Q 013220          183 PSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGN  262 (447)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~  262 (447)
                                                                                         +..+.++|+|||+
T Consensus       146 -------------------------------------------------------------------~~~~~~kl~Dfg~  158 (353)
T 2b9h_A          146 -------------------------------------------------------------------NSNCDLKVCDFGL  158 (353)
T ss_dssp             -------------------------------------------------------------------CTTCCEEECCCTT
T ss_pred             -------------------------------------------------------------------cCCCcEEEEeccc
Confidence                                                                               3456799999999


Q ss_pred             ccccccc-------------cccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHH
Q 013220          263 ACRANKQ-------------FAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHL  328 (447)
Q Consensus       263 a~~~~~~-------------~~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~  328 (447)
                      +......             ....+||+.|+|||++.+ ..++.++|||||||++|+|++|..||.+.      .....+
T Consensus       159 a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~------~~~~~~  232 (353)
T 2b9h_A          159 ARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGR------DYRHQL  232 (353)
T ss_dssp             CEECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHH
T ss_pred             ccccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCC------CcHHHH
Confidence            9754321             123468999999999875 57899999999999999999999999876      356667


Q ss_pred             HHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHH
Q 013220          329 ALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQ  408 (447)
Q Consensus       329 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~e  408 (447)
                      ..+....|..+...............   ............+..       .....+..+.+||.+||+.||++|||++|
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~~~~~~li~~~L~~dP~~Rpt~~e  302 (353)
T 2b9h_A          233 LLIFGIIGTPHSDNDLRCIESPRARE---YIKSLPMYPAAPLEK-------MFPRVNPKGIDLLQRMLVFDPAKRITAKE  302 (353)
T ss_dssp             HHHHHHHCCCCSTTTTTTCCCHHHHH---HHHTSCCCCCCCHHH-------HSTTSCHHHHHHHHHHSCSSGGGSCCHHH
T ss_pred             HHHHHHhCCCchhccccccccchhhH---HhhcccCCCCcchhh-------hcccCCHHHHHHHHHhcCcCcccCCCHHH
Confidence            77777777665321100000000000   000000000000111       11245678899999999999999999999


Q ss_pred             HhcCcccccccCCcc
Q 013220          409 CLQHPWLSLRNSTRD  423 (447)
Q Consensus       409 lL~hp~f~~~~~~~~  423 (447)
                      +|+||||+.......
T Consensus       303 ll~hp~~~~~~~~~~  317 (353)
T 2b9h_A          303 ALEHPYLQTYHDPND  317 (353)
T ss_dssp             HHTSGGGTTTCCTTS
T ss_pred             HhcCccccccCCccc
Confidence            999999998765443

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=8.8e-44  Score=354.70  Aligned_cols=288  Identities=24%  Similarity=0.405  Sum_probs=220.1

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.++||+|+||+||+|++..+++.||+|++....   .....+.+|+++++.+      .|+||+++++++.....
T Consensus        17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~~~~   90 (351)
T 3mi9_A           17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLL------KHENVVNLIEICRTKAS   90 (351)
T ss_dssp             GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHC------CCTTBCCEEEEEEEC--
T ss_pred             cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhc------cCCCcccHhheeecccc
Confidence            68999999999999999999999999999999875432   2234677899999999      78999999999876421


Q ss_pred             ----CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          113 ----NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       113 ----~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                          .+..+++||||+++++...+.... ..+++..+..++.|++.||+|||++ ||+||||||+||++           
T Consensus        91 ~~~~~~~~~~lv~e~~~~~l~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~-~ivH~Dlkp~NIl~-----------  157 (351)
T 3mi9_A           91 PYNRCKGSIYLVFDFCEHDLAGLLSNVL-VKFTLSEIKRVMQMLLNGLYYIHRN-KILHRDMKAANVLI-----------  157 (351)
T ss_dssp             ------CEEEEEEECCSEEHHHHHHCTT-SCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEE-----------
T ss_pred             ccccCCceEEEEEeccCCCHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHHC-CeeCCCCCHHHEEE-----------
Confidence                145799999999878888776433 4589999999999999999999997 99999999999999           


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc-
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN-  267 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~-  267 (447)
                                                                                   +.+..+||+|||++.... 
T Consensus       158 -------------------------------------------------------------~~~~~~kl~Dfg~a~~~~~  176 (351)
T 3mi9_A          158 -------------------------------------------------------------TRDGVLKLADFGLARAFSL  176 (351)
T ss_dssp             -------------------------------------------------------------CTTSCEEECCCTTCEECCC
T ss_pred             -------------------------------------------------------------cCCCCEEEccchhcccccc
Confidence                                                                         345679999999996543 


Q ss_pred             ------cccccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCH
Q 013220          268 ------KQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  340 (447)
Q Consensus       268 ------~~~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~  340 (447)
                            ......+||+.|+|||++.+. .++.++|||||||++|+|++|..||.+.      ........+.+..+..+.
T Consensus       177 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~------~~~~~~~~i~~~~~~~~~  250 (351)
T 3mi9_A          177 AKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGN------TEQHQLALISQLCGSITP  250 (351)
T ss_dssp             CSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCCCCT
T ss_pred             cccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCC------ChHHHHHHHHHHhCCCCh
Confidence                  122345789999999999864 5799999999999999999999999876      477788888888888876


Q ss_pred             HhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          341 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                      .+........ .+....   .... ........+..     ...++.+.+||.+||+.||++|||++|+|+||||+...
T Consensus       251 ~~~~~~~~~~-~~~~~~---~~~~-~~~~~~~~~~~-----~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~  319 (351)
T 3mi9_A          251 EVWPNVDNYE-LYEKLE---LVKG-QKRKVKDRLKA-----YVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDP  319 (351)
T ss_dssp             TTSTTGGGCG-GGTSSC---CCSS-CCCCHHHHHHH-----HHCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGSSS
T ss_pred             hhccccccch-hhcccc---cccc-cccCHHHHhhh-----ccCChHHHHHHHHHhcCChhhCCCHHHHhCCCCcCCCC
Confidence            5432211111 000000   0000 00001111100     01245788999999999999999999999999998644

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=1.2e-43  Score=341.67  Aligned_cols=259  Identities=25%  Similarity=0.433  Sum_probs=191.3

Q ss_pred             cccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH----hHHHHHHHHHHHHHhhcCCCCCcceeee
Q 013220           27 VRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ----FAQAALHEIEVLSAVADGDPSNEKCVIR  102 (447)
Q Consensus        27 ~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~----~~~~~~~E~~~l~~l~~~~~~~~~~Iv~  102 (447)
                      .++|+.+  ++|++.+.||+|+||+||+|++..+++.||+|++.....    ..+.+.+|+++++.+      .|+||++
T Consensus         4 ~~~g~~~--~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~   75 (278)
T 3cok_A            4 TCIGEKI--EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQL------KHPSILE   75 (278)
T ss_dssp             HHHCSSG--GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTB------CCTTBCC
T ss_pred             ccccccc--ccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhC------CCCCeEe
Confidence            4677877  579999999999999999999999999999999875532    235788899999988      7899999


Q ss_pred             ecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecC
Q 013220          103 LIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTI  181 (447)
Q Consensus       103 ~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~  181 (447)
                      +++++..    ....++||||+ +++|.+++... ...+++..+..++.|++.||+|||++ ||+||||||+||++    
T Consensus        76 ~~~~~~~----~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~Nili----  145 (278)
T 3cok_A           76 LYNYFED----SNYVYLVLEMCHNGEMNRYLKNR-VKPFSENEARHFMHQIITGMLYLHSH-GILHRDLTLSNLLL----  145 (278)
T ss_dssp             EEEEEEC----SSEEEEEEECCTTEEHHHHHHTC-SSCCCHHHHHHHHHHHHHHHHHHHHT-TEECSSCCGGGEEE----
T ss_pred             EEEEEcc----CCeEEEEEecCCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEE----
Confidence            9999875    36899999999 78898888643 24689999999999999999999997 99999999999999    


Q ss_pred             CCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecC
Q 013220          182 DPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFG  261 (447)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg  261 (447)
                                                                                          +....++|+|||
T Consensus       146 --------------------------------------------------------------------~~~~~~kl~dfg  157 (278)
T 3cok_A          146 --------------------------------------------------------------------TRNMNIKIADFG  157 (278)
T ss_dssp             --------------------------------------------------------------------CTTCCEEECCCT
T ss_pred             --------------------------------------------------------------------cCCCCEEEEeec
Confidence                                                                                345679999999


Q ss_pred             cccccccc---cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCC
Q 013220          262 NACRANKQ---FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKM  338 (447)
Q Consensus       262 ~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~  338 (447)
                      .+......   .....||+.|+|||.+.+..++.++|||||||++|+|++|..||...+.....                
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~----------------  221 (278)
T 3cok_A          158 LATQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTL----------------  221 (278)
T ss_dssp             TCEECC----------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC-------------------
T ss_pred             ceeeccCCCCcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHHH----------------
Confidence            99765422   22346899999999999888999999999999999999999999765321110                


Q ss_pred             CHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          339 PRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                                                      ..+.......+...+.++.+||.+||+.||++|||++++|+||||...
T Consensus       222 --------------------------------~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~  269 (278)
T 3cok_A          222 --------------------------------NKVVLADYEMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLDHPFMSRN  269 (278)
T ss_dssp             ----------------------------------CCSSCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTSTTTC--
T ss_pred             --------------------------------HHHhhcccCCccccCHHHHHHHHHHcccCHhhCCCHHHHhcCccccCC
Confidence                                            000001112344456789999999999999999999999999999865


Q ss_pred             c
Q 013220          419 N  419 (447)
Q Consensus       419 ~  419 (447)
                      .
T Consensus       270 ~  270 (278)
T 3cok_A          270 S  270 (278)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=2.1e-43  Score=347.89  Aligned_cols=269  Identities=27%  Similarity=0.409  Sum_probs=213.4

Q ss_pred             ccccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH-------hHHHHHHHHHHHHHhhcCCCCC
Q 013220           24 YHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ-------FAQAALHEIEVLSAVADGDPSN   96 (447)
Q Consensus        24 ~~~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~-------~~~~~~~E~~~l~~l~~~~~~~   96 (447)
                      +.|+....+.  ++|++.+.||+|+||+||+|++..+++.||+|+++....       ..+.+.+|+++++.+      .
T Consensus         2 ~~~~~~~~~~--~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l------~   73 (321)
T 2a2a_A            2 MEPFKQQKVE--DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQV------L   73 (321)
T ss_dssp             CCCCBCSCHH--HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHC------C
T ss_pred             CCcccchhhh--ccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhC------C
Confidence            4455544443  689999999999999999999999999999998765431       245788999999999      7


Q ss_pred             cceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCe
Q 013220           97 EKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENI  175 (447)
Q Consensus        97 ~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Ni  175 (447)
                      |+||+++++++..    ....++||||+ +++|.+++...  ..+++..+..++.|++.||+|||++ ||+||||||+||
T Consensus        74 h~~iv~~~~~~~~----~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~lH~~-~ivH~dikp~NI  146 (321)
T 2a2a_A           74 HHNVITLHDVYEN----RTDVVLILELVSGGELFDFLAQK--ESLSEEEATSFIKQILDGVNYLHTK-KIAHFDLKPENI  146 (321)
T ss_dssp             CTTBCCEEEEEEC----SSEEEEEECCCCSCBHHHHHHTC--SCEEHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGE
T ss_pred             CCCcceEEEEEec----CCEEEEEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCChHHE
Confidence            8999999999875    36899999999 88999988643  4589999999999999999999996 999999999999


Q ss_pred             EeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccce
Q 013220          176 LLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRC  255 (447)
Q Consensus       176 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (447)
                      ++....                                                                    .....+
T Consensus       147 l~~~~~--------------------------------------------------------------------~~~~~~  158 (321)
T 2a2a_A          147 MLLDKN--------------------------------------------------------------------IPIPHI  158 (321)
T ss_dssp             EESCTT--------------------------------------------------------------------SSSCCE
T ss_pred             EEecCC--------------------------------------------------------------------CCcCCE
Confidence            994310                                                                    011269


Q ss_pred             eEeecCcccccccc--cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHH
Q 013220          256 KVVDFGNACRANKQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMME  333 (447)
Q Consensus       256 kL~Dfg~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~  333 (447)
                      +|+|||.+......  .....||+.|+|||.+.+..++.++|||||||++|+|++|..||...+      ....+..+..
T Consensus       159 kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~------~~~~~~~i~~  232 (321)
T 2a2a_A          159 KLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDT------KQETLANITS  232 (321)
T ss_dssp             EECCCTTCEECCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSS------HHHHHHHHHT
T ss_pred             EEccCccceecCccccccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCC------HHHHHHHHHh
Confidence            99999999765432  334578999999999998899999999999999999999999997652      2222222221


Q ss_pred             HhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCc
Q 013220          334 LIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP  413 (447)
Q Consensus       334 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp  413 (447)
                      .....+..                                      +....+..+.+||.+||+.||++|||++|+|+||
T Consensus       233 ~~~~~~~~--------------------------------------~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~hp  274 (321)
T 2a2a_A          233 VSYDFDEE--------------------------------------FFSHTSELAKDFIRKLLVKETRKRLTIQEALRHP  274 (321)
T ss_dssp             TCCCCCHH--------------------------------------HHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHHST
T ss_pred             cccccChh--------------------------------------hhcccCHHHHHHHHHHcCCChhhCcCHHHHhcCc
Confidence            11111110                                      0122356889999999999999999999999999


Q ss_pred             cccccc
Q 013220          414 WLSLRN  419 (447)
Q Consensus       414 ~f~~~~  419 (447)
                      ||+...
T Consensus       275 ~~~~~~  280 (321)
T 2a2a_A          275 WITPVD  280 (321)
T ss_dssp             TTSCSS
T ss_pred             cccCCC
Confidence            998654

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=1.3e-43  Score=350.92  Aligned_cols=252  Identities=27%  Similarity=0.375  Sum_probs=201.4

Q ss_pred             CCceEEEEeecccCceEEEEEEeC---CCCeEEEEEEechhH-----HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDT---RTSSYVALKIQKSAA-----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDH  106 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~---~~~~~vaiK~~~~~~-----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~  106 (447)
                      .++|++.+.||+|+||.||+|++.   .+++.||+|+++...     .....+.+|+++++.+      .|+||++++++
T Consensus        16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~~~   89 (327)
T 3a62_A           16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEV------KHPFIVDLIYA   89 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHC------CCTTBCCEEEE
T ss_pred             HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhC------CCCCccceeEE
Confidence            378999999999999999999875   679999999887542     2345677899999999      78999999999


Q ss_pred             ccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCC
Q 013220          107 FKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK  185 (447)
Q Consensus       107 ~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~  185 (447)
                      +..    ...+|+||||+ +++|.+.+...  ..+++..+..++.||+.||+|||++ ||+||||||+||++        
T Consensus        90 ~~~----~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~lH~~-~ivH~Dlkp~Nill--------  154 (327)
T 3a62_A           90 FQT----GGKLYLILEYLSGGELFMQLERE--GIFMEDTACFYLAEISMALGHLHQK-GIIYRDLKPENIML--------  154 (327)
T ss_dssp             EEC----SSCEEEEEECCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCTTTEEE--------
T ss_pred             EEc----CCEEEEEEeCCCCCcHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHhC-CEEcccCCHHHeEE--------
Confidence            875    36899999999 88999888654  3489999999999999999999997 99999999999999        


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccc
Q 013220          186 DPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR  265 (447)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~  265 (447)
                                                                                      +..+.+||+|||++..
T Consensus       155 ----------------------------------------------------------------~~~~~~kl~Dfg~~~~  170 (327)
T 3a62_A          155 ----------------------------------------------------------------NHQGHVKLTDFGLCKE  170 (327)
T ss_dssp             ----------------------------------------------------------------CTTSCEEECCCSCC--
T ss_pred             ----------------------------------------------------------------CCCCcEEEEeCCcccc
Confidence                                                                            4456799999999865


Q ss_pred             ccc---ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh
Q 013220          266 ANK---QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  342 (447)
Q Consensus       266 ~~~---~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (447)
                      ...   .....+||+.|+|||++.+..++.++|||||||++|+|++|..||...+      ....+..+           
T Consensus       171 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~------~~~~~~~i-----------  233 (327)
T 3a62_A          171 SIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGEN------RKKTIDKI-----------  233 (327)
T ss_dssp             --------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHH-----------
T ss_pred             cccCCccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCC------HHHHHHHH-----------
Confidence            322   2334579999999999999889999999999999999999999997652      22222222           


Q ss_pred             hhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC-----ChHHHhcCccccc
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSL  417 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp-----ta~elL~hp~f~~  417 (447)
                                                     ......++...+..+.+||.+||+.||++||     +++|+++||||+.
T Consensus       234 -------------------------------~~~~~~~p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~hp~f~~  282 (327)
T 3a62_A          234 -------------------------------LKCKLNLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRH  282 (327)
T ss_dssp             -------------------------------HHTCCCCCTTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHHSGGGSS
T ss_pred             -------------------------------HhCCCCCCCCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHcCCcccC
Confidence                                           1222234455677899999999999999999     8899999999986


Q ss_pred             cc
Q 013220          418 RN  419 (447)
Q Consensus       418 ~~  419 (447)
                      .+
T Consensus       283 ~~  284 (327)
T 3a62_A          283 IN  284 (327)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=2.5e-43  Score=360.97  Aligned_cols=285  Identities=25%  Similarity=0.415  Sum_probs=222.1

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC--C
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP--N  113 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~--~  113 (447)
                      .+|++.+.||+|+||+||+|++..+++.||||.+..+.   ....+|+++++.+      .|+||++++++|.....  +
T Consensus        54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~---~~~~~E~~il~~l------~hpniv~l~~~~~~~~~~~~  124 (420)
T 1j1b_A           54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK---RFKNRELQIMRKL------DHCNIVRLRYFFYSSGEKKD  124 (420)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT---TSCCHHHHHHHTC------CCTTBCCEEEEEEEEETTTT
T ss_pred             ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc---hhHHHHHHHHHHc------CCCCccceeeEEeccCCCCc
Confidence            57999999999999999999999999999999876543   2345799999999      79999999998865432  2


Q ss_pred             cceEEEEEecccccHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          114 GQHLCMVLEFLGDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       114 ~~~~~lvmE~~~~~L~~~~~~~--~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                      ..++++||||+++++.+.+...  ....+++..++.++.||+.||+|||++ ||+||||||+|||+..            
T Consensus       125 ~~~~~lv~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~-~ivHrDlkp~NILl~~------------  191 (420)
T 1j1b_A          125 EVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF-GICHRDIKPQNLLLDP------------  191 (420)
T ss_dssp             EEEEEEEEECCCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT-TEECSCCSGGGEEEET------------
T ss_pred             ceeEEeehhcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCChhhEEEeC------------
Confidence            3468899999977877766432  235689999999999999999999996 9999999999999942            


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc--cc
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQ  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~--~~  269 (447)
                                                                                 ....+||+|||++....  ..
T Consensus       192 -----------------------------------------------------------~~~~~kl~DFG~a~~~~~~~~  212 (420)
T 1j1b_A          192 -----------------------------------------------------------DTAVLKLCDFGSAKQLVRGEP  212 (420)
T ss_dssp             -----------------------------------------------------------TTTEEEECCCTTCEECCTTCC
T ss_pred             -----------------------------------------------------------CCCeEEeccchhhhhcccCCC
Confidence                                                                       13468999999997543  23


Q ss_pred             cccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC-CC
Q 013220          270 FAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG-GA  347 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~  347 (447)
                      ....++|+.|+|||++.+. .++.++|||||||++|+|++|+.||.+.      ....++..+++.+|....+.... ..
T Consensus       213 ~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~------~~~~~l~~i~~~lg~p~~~~~~~~~~  286 (420)
T 1j1b_A          213 NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGD------SGVDQLVEIIKVLGTPTREQIREMNP  286 (420)
T ss_dssp             CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHHHCSCCHHHHHHHCS
T ss_pred             ceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhCCCCHHHHHhhCh
Confidence            3456889999999999875 6899999999999999999999999876      46778888888888887554321 11


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                      ...++        .........+...      ++...+.++.+||.+||+.||++|||+.|+|+||||+.....
T Consensus       287 ~~~~~--------~~p~~~~~~~~~~------~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~  346 (420)
T 1j1b_A          287 NYTEF--------KFPQIKAHPWTKV------FRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRDP  346 (420)
T ss_dssp             CCCCC--------CCCCCCCCCHHHH------SCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGGCT
T ss_pred             hhhhh--------ccCccCCCCHHHh------cCCCCCHHHHHHHHHhccCChhHCCCHHHHhCCHhhcccccc
Confidence            10000        0000011111111      233456789999999999999999999999999999876543

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=2.9e-43  Score=357.42  Aligned_cols=292  Identities=25%  Similarity=0.430  Sum_probs=222.8

Q ss_pred             cCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           29 VGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        29 ~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      .|+... .+|++.+.||+|+||+||+|++..++. ||+|.+..+.   ....+|+++++.+      .|+||++++++|.
T Consensus        34 ~~~~~~-~~Y~~~~~lG~G~~g~V~~a~~~~~~~-~aikk~~~~~---~~~~~E~~il~~l------~h~niv~l~~~~~  102 (394)
T 4e7w_A           34 TGEQRE-IAYTNCKVIGNGSFGVVFQAKLVESDE-VAIKKVLQDK---RFKNRELQIMRIV------KHPNVVDLKAFFY  102 (394)
T ss_dssp             SCCEEE-EEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEECCT---TSCCHHHHHHHTC------CCTTBCCEEEEEE
T ss_pred             CCCccc-ceEEEeEEEeeCCCeEEEEEEECCCCe-EEEEEEecCc---chHHHHHHHHHhC------CCCCcceEEEEEE
Confidence            455654 689999999999999999999887776 7777654432   2345799999999      7999999999987


Q ss_pred             ccCC--CcceEEEEEecccccHHHHHHh--hccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCC
Q 013220          109 HAGP--NGQHLCMVLEFLGDSLLRLIKY--SRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       109 ~~~~--~~~~~~lvmE~~~~~L~~~~~~--~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~  184 (447)
                      ....  +..++++||||+.+++...+..  .....+++..++.++.||+.||+|||++ ||+||||||+||+++.     
T Consensus       103 ~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~-~ivHrDlkp~Nill~~-----  176 (394)
T 4e7w_A          103 SNGDKKDEVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSI-GICHRDIKPQNLLLDP-----  176 (394)
T ss_dssp             EESSSSSCEEEEEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEET-----
T ss_pred             ecCCCCCceEEEEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC-CccCCCCCHHHEEEcC-----
Confidence            6542  3346889999997776655532  1235689999999999999999999996 9999999999999941     


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                        ..+.+||+|||++.
T Consensus       177 ------------------------------------------------------------------~~~~~kL~DFG~a~  190 (394)
T 4e7w_A          177 ------------------------------------------------------------------PSGVLKLIDFGSAK  190 (394)
T ss_dssp             ------------------------------------------------------------------TTTEEEECCCTTCE
T ss_pred             ------------------------------------------------------------------CCCcEEEeeCCCcc
Confidence                                                                              35679999999997


Q ss_pred             ccc--cccccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          265 RAN--KQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       265 ~~~--~~~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                      ...  ......++|+.|+|||++.+. .++.++|||||||++|+|++|+.||.+.      .....+..+.+.+|..+..
T Consensus       191 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~------~~~~~l~~i~~~~g~p~~~  264 (394)
T 4e7w_A          191 ILIAGEPNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGE------SGIDQLVEIIKVLGTPSRE  264 (394)
T ss_dssp             ECCTTCCCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHHHCCCCHH
T ss_pred             cccCCCCCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhCCCCHH
Confidence            543  334456889999999999875 5899999999999999999999999876      4777888889999988865


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                      ........   +...    .........+...      ++...++++.+||.+||+.||.+|||+.|+|+||||+..+..
T Consensus       265 ~~~~~~~~---~~~~----~~~~~~~~~~~~~------~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~  331 (394)
T 4e7w_A          265 QIKTMNPN---YMEH----KFPQIRPHPFSKV------FRPRTPPDAIDLISRLLEYTPSARLTAIEALCHPFFDELRTG  331 (394)
T ss_dssp             HHHHHCGG---GSSS----CCCCCCCCCHHHH------SCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGSTTTSS
T ss_pred             HHHhhChh---hhhh----ccccccCCcHHHh------ccccCCHHHHHHHHHHhCCChhhCCCHHHHhcChhhhhhccc
Confidence            43211100   0000    0000000111111      233456789999999999999999999999999999986554


Q ss_pred             c
Q 013220          422 R  422 (447)
Q Consensus       422 ~  422 (447)
                      .
T Consensus       332 ~  332 (394)
T 4e7w_A          332 E  332 (394)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=3.4e-43  Score=358.74  Aligned_cols=253  Identities=24%  Similarity=0.386  Sum_probs=208.8

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH----hHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ----FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~----~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      .++|++.+.||+|+||+||+|++..+++.||+|+++....    ....+.+|.++++.+      +|+||++++++|.+ 
T Consensus        68 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l------~hp~Iv~l~~~~~~-  140 (410)
T 3v8s_A           68 AEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFA------NSPWVVQLFYAFQD-  140 (410)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHC------CCTTBCCEEEEEEC-
T ss_pred             ccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhC------CCCCCCeEEEEEEE-
Confidence            4789999999999999999999999999999999876432    233578899999998      89999999999985 


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                         ...+|+||||| |++|.+++..   ..+++..++.++.||+.||+|||++ ||+||||||+|||+            
T Consensus       141 ---~~~~~lV~E~~~gg~L~~~l~~---~~~~e~~~~~~~~qi~~aL~~LH~~-givHrDLKp~NILl------------  201 (410)
T 3v8s_A          141 ---DRYLYMVMEYMPGGDLVNLMSN---YDVPEKWARFYTAEVVLALDAIHSM-GFIHRDVKPDNMLL------------  201 (410)
T ss_dssp             ---SSEEEEEECCCTTEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEE------------
T ss_pred             ---CCEEEEEEeCCCCCcHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC-CeEeccCCHHHeeE------------
Confidence               47899999999 8999998864   3489999999999999999999996 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                  +..+.+||+|||++......
T Consensus       202 ------------------------------------------------------------~~~g~ikL~DFG~a~~~~~~  221 (410)
T 3v8s_A          202 ------------------------------------------------------------DKSGHLKLADFGTCMKMNKE  221 (410)
T ss_dssp             ------------------------------------------------------------CTTSCEEECCCTTCEECCTT
T ss_pred             ------------------------------------------------------------CCCCCEEEeccceeEeeccC
Confidence                                                                        44678999999999765432


Q ss_pred             ----cccCCCCCCccChHHhhcCC----CCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          270 ----FAEEIQTRQYRAPEVILRAG----YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       270 ----~~~~~gt~~y~aPE~l~~~~----~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                          ....+||+.|+|||++.+..    ++.++|||||||++|+|++|..||...+      .......++...      
T Consensus       222 ~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~------~~~~~~~i~~~~------  289 (410)
T 3v8s_A          222 GMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADS------LVGTYSKIMNHK------  289 (410)
T ss_dssp             SEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSS------HHHHHHHHHTHH------
T ss_pred             CcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCC------hhhHHHHHHhcc------
Confidence                23568999999999998765    7899999999999999999999997653      222222222110      


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCC--hhhHHHHHHHHhhccccCCCC--CCChHHHhcCccccc
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFS--ETDAREFAEFLVPLLDFTPEK--RPTAQQCLQHPWLSL  417 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~ll~~~L~~dP~k--Rpta~elL~hp~f~~  417 (447)
                                                        ....++  ..++.++.+||.+||+.+|.+  ||+++|+++||||+.
T Consensus       290 ----------------------------------~~~~~p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~Hp~f~~  335 (410)
T 3v8s_A          290 ----------------------------------NSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHLFFKN  335 (410)
T ss_dssp             ----------------------------------HHCCCCTTCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHTSGGGCC
T ss_pred             ----------------------------------ccccCCCcccccHHHHHHHHHHccChhhhCCCCCHHHHhcCccccC
Confidence                                              001122  245778999999999999988  999999999999997


Q ss_pred             cc
Q 013220          418 RN  419 (447)
Q Consensus       418 ~~  419 (447)
                      .+
T Consensus       336 ~~  337 (410)
T 3v8s_A          336 DQ  337 (410)
T ss_dssp             SS
T ss_pred             CC
Confidence            53

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=4.8e-43  Score=339.77  Aligned_cols=264  Identities=24%  Similarity=0.356  Sum_probs=211.2

Q ss_pred             cccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeee
Q 013220           27 VRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRL  103 (447)
Q Consensus        27 ~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~  103 (447)
                      -.+|...++..|++.++||+|+||+||+|.+..++..||+|++...   ....+.+.+|+++++.+      .|+||+++
T Consensus        17 ~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~   90 (290)
T 1t4h_A           17 KAVGMSNDGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGL------QHPNIVRF   90 (290)
T ss_dssp             -CCEECTTSCEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTC------CCTTBCCE
T ss_pred             hhhhcccCceeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhC------CCCCeeee
Confidence            3445555667899999999999999999999999999999987654   23456788899999998      79999999


Q ss_pred             cccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCC--cccccCCCCCeEeeec
Q 013220          104 IDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELG--IIHTDLKPENILLVST  180 (447)
Q Consensus       104 ~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~g--IiH~Dikp~Nill~~~  180 (447)
                      ++++......+..+++||||+ +++|.+++...  ..+++..+..++.|++.||+|||++ |  |+||||||+||++.. 
T Consensus        91 ~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~~~i~H~dikp~Nil~~~-  166 (290)
T 1t4h_A           91 YDSWESTVKGKKCIVLVTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITG-  166 (290)
T ss_dssp             EEEEEEESSSCEEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCSCCCGGGEEESS-
T ss_pred             eeeeccccCCCceEEEEEEecCCCCHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHcC-CCCEEECCCCHHHEEEEC-
Confidence            999887666678899999999 88999988754  4589999999999999999999996 8  999999999999931 


Q ss_pred             CCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeec
Q 013220          181 IDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDF  260 (447)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Df  260 (447)
                                                                                            ....++|+||
T Consensus       167 ----------------------------------------------------------------------~~~~~kl~Df  176 (290)
T 1t4h_A          167 ----------------------------------------------------------------------PTGSVKIGDL  176 (290)
T ss_dssp             ----------------------------------------------------------------------TTSCEEECCT
T ss_pred             ----------------------------------------------------------------------CCCCEEEeeC
Confidence                                                                                  3467999999


Q ss_pred             Ccccccccc-cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhC-CC
Q 013220          261 GNACRANKQ-FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIG-KM  338 (447)
Q Consensus       261 g~a~~~~~~-~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g-~~  338 (447)
                      |++...... .....||+.|+|||.+.+ .++.++|||||||++|+|++|..||....      .......  .+.. ..
T Consensus       177 g~~~~~~~~~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~pf~~~~------~~~~~~~--~~~~~~~  247 (290)
T 1t4h_A          177 GLATLKRASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQ------NAAQIYR--RVTSGVK  247 (290)
T ss_dssp             TGGGGCCTTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCS------SHHHHHH--HHTTTCC
T ss_pred             CCcccccccccccccCCcCcCCHHHHhc-cCCCcchHHHHHHHHHHHHhCCCCCCCcC------cHHHHHH--HHhccCC
Confidence            999754433 334578999999998864 58999999999999999999999997542      1111111  1100 00


Q ss_pred             CHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccc
Q 013220          339 PRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~  417 (447)
                      +.                                      .++...++++.+||.+||+.||++|||++|+|+||||++
T Consensus       248 ~~--------------------------------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h~~f~~  288 (290)
T 1t4h_A          248 PA--------------------------------------SFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQE  288 (290)
T ss_dssp             CG--------------------------------------GGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGC-
T ss_pred             cc--------------------------------------ccCCCCCHHHHHHHHHHccCChhhCCCHHHHhhCccccc
Confidence            00                                      012223457899999999999999999999999999986

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=1.5e-43  Score=350.06  Aligned_cols=253  Identities=24%  Similarity=0.325  Sum_probs=202.7

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      ++|++.+.||+|+||+||+|++..+++.||+|++....  ...+.+.+|+.+++.+      .|+||+++++++..    
T Consensus         7 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~hpnIv~~~~~~~~----   76 (323)
T 3tki_A            7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKML------NHENVVKFYGHRRE----   76 (323)
T ss_dssp             TCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHC------CCTTBCCEEEEEEC----
T ss_pred             hhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhC------CCCCCCeEEEEEec----
Confidence            68999999999999999999999999999999875432  2346788999999999      78999999998875    


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      +...++||||| +++|.+.+...  ..+++..+..++.||+.||+|||++ ||+||||||+||++               
T Consensus        77 ~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH~~-givH~Dlkp~NIll---------------  138 (323)
T 3tki_A           77 GNIQYLFLEYCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYLHGI-GITHRDIKPENLLL---------------  138 (323)
T ss_dssp             SSEEEEEEECCTTEEGGGGSBTT--TBCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEE---------------
T ss_pred             CCeEEEEEEcCCCCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccccccchHHEEE---------------
Confidence            46899999999 78898877543  3489999999999999999999996 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc----
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----  268 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~----  268 (447)
                                                                               +....++|+|||++.....    
T Consensus       139 ---------------------------------------------------------~~~~~~kl~Dfg~a~~~~~~~~~  161 (323)
T 3tki_A          139 ---------------------------------------------------------DERDNLKISDFGLATVFRYNNRE  161 (323)
T ss_dssp             ---------------------------------------------------------CTTCCEEECCCTTCEECEETTEE
T ss_pred             ---------------------------------------------------------eCCCCEEEEEeeccceeccCCcc
Confidence                                                                     3456799999999965431    


Q ss_pred             -ccccCCCCCCccChHHhhcCCC-CccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCC
Q 013220          269 -QFAEEIQTRQYRAPEVILRAGY-SFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  346 (447)
Q Consensus       269 -~~~~~~gt~~y~aPE~l~~~~~-~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  346 (447)
                       .....+||+.|+|||++.+..+ +.++|||||||++|+|++|..||...+..     .......... ..         
T Consensus       162 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~-----~~~~~~~~~~-~~---------  226 (323)
T 3tki_A          162 RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDS-----CQEYSDWKEK-KT---------  226 (323)
T ss_dssp             CCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTT-----SHHHHHHHTT-CT---------
T ss_pred             cccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchH-----HHHHHHHhcc-cc---------
Confidence             2234579999999999988775 78999999999999999999999765311     1111111000 00         


Q ss_pred             CCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          347 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                                                    .......++..+.+||.+||+.||++|||++|+|+||||...
T Consensus       227 ------------------------------~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~h~~~~~~  268 (323)
T 3tki_A          227 ------------------------------YLNPWKKIDSAPLALLHKILVENPSARITIPDIKKDRWYNKP  268 (323)
T ss_dssp             ------------------------------TSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTTTTCC
T ss_pred             ------------------------------cCCccccCCHHHHHHHHHHccCChhhCcCHHHHhhChhhccc
Confidence                                          000112346688899999999999999999999999999864

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=1e-43  Score=354.21  Aligned_cols=260  Identities=27%  Similarity=0.445  Sum_probs=206.5

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      ++|++.+.||+|+||+||+|.+..+++.||+|++.....   ...+|++++..+.     .|+||+++++++.+    +.
T Consensus        22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~---~~~~E~~~l~~~~-----~hp~iv~~~~~~~~----~~   89 (342)
T 2qr7_A           22 DGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR---DPTEEIEILLRYG-----QHPNIITLKDVYDD----GK   89 (342)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC---CCHHHHHHHHHHT-----TSTTBCCEEEEEEC----SS
T ss_pred             ccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC---ChHHHHHHHHHhc-----CCCCcCeEEEEEEc----CC
Confidence            689999999999999999999999999999999876532   3467888888874     79999999999874    47


Q ss_pred             eEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          116 HLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       116 ~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      .+|+||||| +++|.+.+...  ..+++..+..++.||+.||+|||++ ||+||||||+||++....             
T Consensus        90 ~~~lv~E~~~gg~L~~~i~~~--~~~~~~~~~~~~~qi~~al~~lH~~-givHrDlkp~NIl~~~~~-------------  153 (342)
T 2qr7_A           90 YVYVVTELMKGGELLDKILRQ--KFFSEREASAVLFTITKTVEYLHAQ-GVVHRDLKPSNILYVDES-------------  153 (342)
T ss_dssp             EEEEEECCCCSCBHHHHHHTC--TTCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEESSSS-------------
T ss_pred             EEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CcEeccCCHHHEEEecCC-------------
Confidence            899999999 88999888654  4589999999999999999999997 999999999999984310             


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---cc
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FA  271 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~~  271 (447)
                                                                             .....+||+|||++......   ..
T Consensus       154 -------------------------------------------------------~~~~~~kl~Dfg~a~~~~~~~~~~~  178 (342)
T 2qr7_A          154 -------------------------------------------------------GNPESIRICDFGFAKQLRAENGLLM  178 (342)
T ss_dssp             -------------------------------------------------------CSGGGEEECCCTTCEECBCTTCCBC
T ss_pred             -------------------------------------------------------CCcCeEEEEECCCcccCcCCCCcee
Confidence                                                                   12346999999999754322   33


Q ss_pred             cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccc
Q 013220          272 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  351 (447)
Q Consensus       272 ~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  351 (447)
                      ..+||+.|+|||++.+..++.++|||||||++|+|++|..||......   ........+..  +..+.           
T Consensus       179 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~---~~~~~~~~i~~--~~~~~-----------  242 (342)
T 2qr7_A          179 TPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDD---TPEEILARIGS--GKFSL-----------  242 (342)
T ss_dssp             CSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTS---CHHHHHHHHHH--CCCCC-----------
T ss_pred             ccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcC---CHHHHHHHHcc--CCccc-----------
Confidence            457899999999999888899999999999999999999999754210   11111111110  00000           


Q ss_pred             hhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          352 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                               .......+++++.+||.+||+.||++|||+.|+|+||||....
T Consensus       243 -------------------------~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~hp~~~~~~  285 (342)
T 2qr7_A          243 -------------------------SGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRHPWIVHWD  285 (342)
T ss_dssp             -------------------------CSTTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTSHHHHTGG
T ss_pred             -------------------------CccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcCCeecCcc
Confidence                                     0011234577899999999999999999999999999997653

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=1.8e-43  Score=349.63  Aligned_cols=262  Identities=24%  Similarity=0.428  Sum_probs=190.4

Q ss_pred             CceEEE---EeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQ---RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~---~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|.+.   +.||+|+||+||+|.+..+++.||+|++....  .....+|+++++.+.     +|+||+++++++..   
T Consensus         8 ~~y~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~e~~~l~~l~-----~h~niv~~~~~~~~---   77 (325)
T 3kn6_A            8 QHYDLDLKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKRM--EANTQKEITALKLCE-----GHPNIVKLHEVFHD---   77 (325)
T ss_dssp             HHEEECTTSCCSEEETTEEEEEEEETTTCCEEEEEEEEGGG--HHHHHHHHHHHHHTT-----TCTTBCCEEEEEEC---
T ss_pred             hccccccCCCccccCCCeEEEEEEECCCCCEEEEEEEChhh--hhhHHHHHHHHHHhc-----CCCCeeEEEEEEEc---
Confidence            568876   78999999999999999999999999987543  356788999999985     59999999999875   


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                       ....|+||||+ +++|.+.+...  ..+++..+..++.|++.||+|||++ ||+||||||+||++...           
T Consensus        78 -~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~-~ivH~Dlkp~NIll~~~-----------  142 (325)
T 3kn6_A           78 -QLHTFLVMELLNGGELFERIKKK--KHFSETEASYIMRKLVSAVSHMHDV-GVVHRDLKPENLLFTDE-----------  142 (325)
T ss_dssp             -SSEEEEEECCCCSCBHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEEEC------------
T ss_pred             -CCEEEEEEEccCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CCeecCCCHHHEEEecC-----------
Confidence             36899999999 88999988754  4599999999999999999999997 99999999999999542           


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc---
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---  268 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~---  268 (447)
                                                                                .....++|+|||++.....   
T Consensus       143 ----------------------------------------------------------~~~~~~kl~Dfg~a~~~~~~~~  164 (325)
T 3kn6_A          143 ----------------------------------------------------------NDNLEIKIIDFGFARLKPPDNQ  164 (325)
T ss_dssp             -------------------------------------------------------------CEEEECCCTTCEECCC---
T ss_pred             ----------------------------------------------------------CCcccEEEeccccceecCCCCC
Confidence                                                                      1234799999999975432   


Q ss_pred             ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          269 QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       269 ~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      .....+||+.|+|||++.+..++.++|||||||++|+|++|..||...+.........  ..+..+.             
T Consensus       165 ~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~--~~~~~i~-------------  229 (325)
T 3kn6_A          165 PLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAV--EIMKKIK-------------  229 (325)
T ss_dssp             -------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHH--HHHHHHT-------------
T ss_pred             cccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHH--HHHHHHH-------------
Confidence            2334578999999999999999999999999999999999999997654221111111  1111110             


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCC----hhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFS----ETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                                                .....++    ..+++++.+||.+||+.||++|||++|+++||||+.....
T Consensus       230 --------------------------~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h~w~~~~~~~  280 (325)
T 3kn6_A          230 --------------------------KGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYNEWLQDGSQL  280 (325)
T ss_dssp             --------------------------TTCCCCCSHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTTCGGGCTTCCC
T ss_pred             --------------------------cCCCCCCcccccCCCHHHHHHHHHHCCCChhHCCCHHHHhcChhhccCccC
Confidence                                      0001111    2346789999999999999999999999999999976543

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=8.7e-44  Score=355.95  Aligned_cols=302  Identities=22%  Similarity=0.353  Sum_probs=216.6

Q ss_pred             ccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeee
Q 013220           26 AVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRL  103 (447)
Q Consensus        26 ~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~  103 (447)
                      +..+|++.. ++|++.++||+|+||+||+|++..++..||+|++...  ....+.+.+|+++++.+      +|+||+++
T Consensus        24 ~~~~~~~~~-~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~   96 (360)
T 3eqc_A           24 KQKVGELKD-DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHEC------NSPYIVGF   96 (360)
T ss_dssp             HHTCCCCCG-GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGC------CCTTBCCE
T ss_pred             hhccccccc-ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHC------CCCCEEEE
Confidence            557788886 7999999999999999999999999999999988654  34456788999999988      78999999


Q ss_pred             cccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCC
Q 013220          104 IDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTID  182 (447)
Q Consensus       104 ~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~  182 (447)
                      ++++...    ...++||||+ +++|.+++...  ..+++..+..++.|++.||+|||++.||+||||||+||++     
T Consensus        97 ~~~~~~~----~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~-----  165 (360)
T 3eqc_A           97 YGAFYSD----GEISICMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILV-----  165 (360)
T ss_dssp             EEEEEET----TEEEEEECCCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEE-----
T ss_pred             eEEEEEC----CEEEEEEECCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHhCCEEcCCccHHHEEE-----
Confidence            9998853    6899999999 78999988754  3489999999999999999999983399999999999999     


Q ss_pred             CCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCc
Q 013220          183 PSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGN  262 (447)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~  262 (447)
                                                                                         +.+..++|+|||+
T Consensus       166 -------------------------------------------------------------------~~~~~~kl~Dfg~  178 (360)
T 3eqc_A          166 -------------------------------------------------------------------NSRGEIKLCDFGV  178 (360)
T ss_dssp             -------------------------------------------------------------------CTTCCEEECCCCC
T ss_pred             -------------------------------------------------------------------CCCCCEEEEECCC
Confidence                                                                               3456799999999


Q ss_pred             ccccc-cccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHH--HhCCCC
Q 013220          263 ACRAN-KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMME--LIGKMP  339 (447)
Q Consensus       263 a~~~~-~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~--~~g~~~  339 (447)
                      +.... .......||+.|+|||++.+..++.++|||||||++|+|++|..||...+       ...+..+..  ..+...
T Consensus       179 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-------~~~~~~~~~~~~~~~~~  251 (360)
T 3eqc_A          179 SGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPD-------AKELELMFGCQVEGDAA  251 (360)
T ss_dssp             CHHHHHHC----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCC-------HHHHHHHHC--------
T ss_pred             CcccccccccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC-------HHHHHHHhcccccccCC
Confidence            86543 23344578999999999999899999999999999999999999997652       222222221  111111


Q ss_pred             HHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhc-CC-ChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccc
Q 013220          340 RKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKY-RF-SETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~  417 (447)
                      ....... .....+.................+.+..... .. ....+.++.+||.+||+.||++|||++|+|+||||+.
T Consensus       252 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~  330 (360)
T 3eqc_A          252 ETPPRPR-TPGRPLNKFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKR  330 (360)
T ss_dssp             -----------------------CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTSHHHHH
T ss_pred             CCCCCcc-cCCCcccccccCCCCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhhChHhhc
Confidence            1100000 0000000000000000000000111111111 11 2235778999999999999999999999999999997


Q ss_pred             ccC
Q 013220          418 RNS  420 (447)
Q Consensus       418 ~~~  420 (447)
                      ...
T Consensus       331 ~~~  333 (360)
T 3eqc_A          331 SDA  333 (360)
T ss_dssp             HHH
T ss_pred             chH
Confidence            653

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=3.5e-43  Score=367.96  Aligned_cols=273  Identities=28%  Similarity=0.436  Sum_probs=215.4

Q ss_pred             CCCCCccccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--------------HhHHHHHHHHH
Q 013220           19 YRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--------------QFAQAALHEIE   84 (447)
Q Consensus        19 ~~~~~~~~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--------------~~~~~~~~E~~   84 (447)
                      ...|.|.+...|.+.  ++|++.++||+|+||+||+|++..++..||+|++....              ...+.+.+|++
T Consensus        21 ~~~~~~~~~~~~~i~--~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~   98 (504)
T 3q5i_A           21 INPGMYVRKKEGKIG--ESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEIS   98 (504)
T ss_dssp             CCGGGGCCEECSCGG--GTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHH
T ss_pred             echhheeeccCCCcc--cceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHH
Confidence            445667666666655  68999999999999999999999999999999876543              23457889999


Q ss_pred             HHHHhhcCCCCCcceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhC
Q 013220           85 VLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHREL  163 (447)
Q Consensus        85 ~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~  163 (447)
                      +++.+      .||||+++++++..    ....|+||||| +++|.+.+...  ..+++..+..++.||+.||+|||++ 
T Consensus        99 ~l~~l------~hpniv~~~~~~~~----~~~~~lv~e~~~gg~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH~~-  165 (504)
T 3q5i_A           99 LLKSL------DHPNIIKLFDVFED----KKYFYLVTEFYEGGELFEQIINR--HKFDECDAANIMKQILSGICYLHKH-  165 (504)
T ss_dssp             HHHTC------CCTTBCCEEEEEEC----SSEEEEEEECCTTCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHhC------CCCCCCeEEEEEEc----CCEEEEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence            99999      78999999999875    47899999999 88999888654  4599999999999999999999996 


Q ss_pred             CcccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCC
Q 013220          164 GIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPK  243 (447)
Q Consensus       164 gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (447)
                      ||+||||||+||++...                                                               
T Consensus       166 ~ivH~Dlkp~Nil~~~~---------------------------------------------------------------  182 (504)
T 3q5i_A          166 NIVHRDIKPENILLENK---------------------------------------------------------------  182 (504)
T ss_dssp             TEECSCCSGGGEEESST---------------------------------------------------------------
T ss_pred             CeEeCCCcHHHEEEecC---------------------------------------------------------------
Confidence            99999999999999431                                                               


Q ss_pred             CCccCCCcccceeEeecCccccccc--ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCC
Q 013220          244 PERCLDGIDMRCKVVDFGNACRANK--QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGF  321 (447)
Q Consensus       244 ~~~~~~~~~~~~kL~Dfg~a~~~~~--~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~  321 (447)
                            .....+||+|||++.....  .....+||+.|+|||++.+ .++.++|||||||++|+|++|..||.+.+    
T Consensus       183 ------~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~----  251 (504)
T 3q5i_A          183 ------NSLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVLKK-KYNEKCDVWSCGVIMYILLCGYPPFGGQN----  251 (504)
T ss_dssp             ------TCCSSEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHTT-CBCTHHHHHHHHHHHHHHHHSSCSSCCSS----
T ss_pred             ------CCCccEEEEECCCCEEcCCCCccccccCCcCCCCHHHhcc-CCCchHHHHHHHHHHHHHHhCCCCCCCCC----
Confidence                  1234699999999976543  2345679999999999874 68999999999999999999999997652    


Q ss_pred             CCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCC
Q 013220          322 CEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPE  401 (447)
Q Consensus       322 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~  401 (447)
                        ....+..+....-.++..                                      ....++.++.+||.+||+.||.
T Consensus       252 --~~~~~~~i~~~~~~~~~~--------------------------------------~~~~~s~~~~~li~~~L~~dp~  291 (504)
T 3q5i_A          252 --DQDIIKKVEKGKYYFDFN--------------------------------------DWKNISDEAKELIKLMLTYDYN  291 (504)
T ss_dssp             --HHHHHHHHHHCCCCCCHH--------------------------------------HHTTSCHHHHHHHHHHTCSSTT
T ss_pred             --HHHHHHHHHcCCCCCCcc--------------------------------------ccCCCCHHHHHHHHHHcCCChh
Confidence              222222222110000100                                      0023466899999999999999


Q ss_pred             CCCChHHHhcCcccccccC
Q 013220          402 KRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       402 kRpta~elL~hp~f~~~~~  420 (447)
                      +|||++|+|+||||+....
T Consensus       292 ~R~t~~e~l~h~~~~~~~~  310 (504)
T 3q5i_A          292 KRCTAEEALNSRWIKKYAN  310 (504)
T ss_dssp             TSCCHHHHHTSHHHHHTCC
T ss_pred             HCCCHHHHhcCHhhhhchh
Confidence            9999999999999986543

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=1.1e-43  Score=351.05  Aligned_cols=268  Identities=29%  Similarity=0.435  Sum_probs=212.1

Q ss_pred             cCccccCCceEEE-EeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeec
Q 013220           29 VGDLFNGGRYIAQ-RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLI  104 (447)
Q Consensus        29 ~g~~~~~~~y~l~-~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~  104 (447)
                      .++.++ ++|.+. ++||+|+||+||+|++..+++.||+|+++...   .....+.+|+++++.+.     +|+||++++
T Consensus        22 ~~~~~~-~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~-----~~~~iv~~~   95 (327)
T 3lm5_A           22 SMENFN-NFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAK-----SCPRVINLH   95 (327)
T ss_dssp             CHHHHH-HHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTT-----TCTTBCCEE
T ss_pred             HHHhhh-hEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhcc-----CCCCEEEEE
Confidence            345565 688888 88999999999999999999999999876543   22457889999999986     679999999


Q ss_pred             ccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCC
Q 013220          105 DHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP  183 (447)
Q Consensus       105 ~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~  183 (447)
                      +++..    ....++||||+ +++|.+++.......+++..+..++.||+.||+|||++ ||+||||||+||++...   
T Consensus        96 ~~~~~----~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~-givH~Dikp~NIl~~~~---  167 (327)
T 3lm5_A           96 EVYEN----TSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQN-NIVHLDLKPQNILLSSI---  167 (327)
T ss_dssp             EEEEC----SSEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEESCB---
T ss_pred             EEEEe----CCeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC-CeecCcCChHHEEEecC---
Confidence            99874    36899999999 88898877554445689999999999999999999997 99999999999999431   


Q ss_pred             CCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcc
Q 013220          184 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  263 (447)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a  263 (447)
                                                                                        .....++|+|||++
T Consensus       168 ------------------------------------------------------------------~~~~~~kL~Dfg~a  181 (327)
T 3lm5_A          168 ------------------------------------------------------------------YPLGDIKIVDFGMS  181 (327)
T ss_dssp             ------------------------------------------------------------------TTBCCEEECCGGGC
T ss_pred             ------------------------------------------------------------------CCCCcEEEeeCccc
Confidence                                                                              12467999999999


Q ss_pred             cccccc--cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          264 CRANKQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       264 ~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                      ......  .....||+.|+|||++.+..++.++|||||||++|+|++|..||...+      .......+.......+. 
T Consensus       182 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~------~~~~~~~i~~~~~~~~~-  254 (327)
T 3lm5_A          182 RKIGHACELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGED------NQETYLNISQVNVDYSE-  254 (327)
T ss_dssp             EEC---------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHTCCCCCT-
T ss_pred             cccCCccccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC------chHHHHHHHhcccccCc-
Confidence            765433  234578999999999999899999999999999999999999997652      22222222222111111 


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccC
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~  420 (447)
                                                           ......+..+.+||.+||+.||++|||++|+|+||||+..+-
T Consensus       255 -------------------------------------~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~h~~~~~~~~  296 (327)
T 3lm5_A          255 -------------------------------------ETFSSVSQLATDFIQSLLVKNPEKRPTAEICLSHSWLQQWDF  296 (327)
T ss_dssp             -------------------------------------TTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTCGGGCCCCT
T ss_pred             -------------------------------------hhhcccCHHHHHHHHHHcCCChhhCcCHHHHhCCHhhccccc
Confidence                                                 112345678999999999999999999999999999987643

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=9.1e-44  Score=366.76  Aligned_cols=252  Identities=28%  Similarity=0.424  Sum_probs=202.6

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      .++|++.+.||+|+||.||+|++..+++.||+|+++...    .....+.+|+++++.+      .|+||+++++++...
T Consensus       147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~l~~~~~~~  220 (446)
T 4ejn_A          147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNS------RHPFLTALKYSFQTH  220 (446)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCC------SCTTSCCEEEEEEET
T ss_pred             hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhC------CCCeEeeEEEEEeeC
Confidence            368999999999999999999999999999999987643    2234556677777766      799999999998854


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh-hCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR-ELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~-~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                          ..+++||||+ +++|...+...  ..+++..++.++.||+.||+|||+ + ||+||||||+|||+           
T Consensus       221 ----~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~-giiHrDlkp~NIll-----------  282 (446)
T 4ejn_A          221 ----DRLCFVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSALDYLHSEK-NVVYRDLKLENLML-----------  282 (446)
T ss_dssp             ----TEEEEEECCCSSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHHT-CCCCCCCCGGGEEE-----------
T ss_pred             ----CEEEEEEeeCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHhhcC-CEEECCCCHHHEEE-----------
Confidence                6899999999 88998888654  358999999999999999999998 6 99999999999999           


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc-
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN-  267 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~-  267 (447)
                                                                                   +.++.+||+|||++.... 
T Consensus       283 -------------------------------------------------------------~~~~~~kl~DFG~a~~~~~  301 (446)
T 4ejn_A          283 -------------------------------------------------------------DKDGHIKITDFGLCKEGIK  301 (446)
T ss_dssp             -------------------------------------------------------------CSSSCEEECCCCCCCTTCC
T ss_pred             -------------------------------------------------------------CCCCCEEEccCCCceeccC
Confidence                                                                         445689999999997532 


Q ss_pred             --cccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          268 --KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       268 --~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                        ......+||+.|+|||++.+..++.++|||||||++|+|++|..||...+      .......               
T Consensus       302 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~------~~~~~~~---------------  360 (446)
T 4ejn_A          302 DGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD------HEKLFEL---------------  360 (446)
T ss_dssp             -----CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHH---------------
T ss_pred             CCcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCC------HHHHHHH---------------
Confidence              22345689999999999999999999999999999999999999997652      1111111               


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC-----ChHHHhcCccccccc
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRN  419 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp-----ta~elL~hp~f~~~~  419 (447)
                                                 +......++...++++.+||.+||+.||.+||     |++|+|+||||+..+
T Consensus       361 ---------------------------i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~hp~f~~~~  412 (446)
T 4ejn_A          361 ---------------------------ILMEEIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIV  412 (446)
T ss_dssp             ---------------------------HHHCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTTCC
T ss_pred             ---------------------------HHhCCCCCCccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHhCccccCCC
Confidence                                       12223335556678899999999999999999     999999999999764

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=1.8e-42  Score=340.76  Aligned_cols=290  Identities=26%  Similarity=0.408  Sum_probs=224.3

Q ss_pred             cCCceEEEEeecccCceEEEEEEeC-CCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           34 NGGRYIAQRKLGWGQFSIVWLAYDT-RTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        34 ~~~~y~l~~~lG~G~~g~Vy~a~~~-~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      ..++|++.+.||+|+||+||+|++. .+++.||+|+++...   .....+.+|+++++.+...   .|+||+++++++..
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~---~h~~i~~~~~~~~~   85 (326)
T 1blx_A            9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETF---EHPNVVRLFDVCTV   85 (326)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHT---CCTTBCCEEEEEEE
T ss_pred             chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhcc---CCCCeEeeeeeeee
Confidence            3479999999999999999999985 678999999876432   1233577888888887543   68999999998863


Q ss_pred             cC-CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          110 AG-PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       110 ~~-~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                      .. ......++||||++++|.+++.......+++..+..++.|++.||+|||++ ||+||||||+||++           
T Consensus        86 ~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-gi~H~dlkp~Nili-----------  153 (326)
T 1blx_A           86 SRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH-RVVHRDLKPQNILV-----------  153 (326)
T ss_dssp             EECSSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEE-----------
T ss_pred             cccCCCceEEEEEecCCCCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHC-CceeccCCHHHeEE-----------
Confidence            21 134689999999988999988765555689999999999999999999997 99999999999999           


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                   +..+.++|+|||.+.....
T Consensus       154 -------------------------------------------------------------~~~~~~kl~Dfg~~~~~~~  172 (326)
T 1blx_A          154 -------------------------------------------------------------TSSGQIKLADFGLARIYSF  172 (326)
T ss_dssp             -------------------------------------------------------------CTTCCEEECSCCSCCCCCG
T ss_pred             -------------------------------------------------------------cCCCCEEEecCcccccccC
Confidence                                                                         3456799999999975542


Q ss_pred             --ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC-
Q 013220          269 --QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG-  345 (447)
Q Consensus       269 --~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-  345 (447)
                        ......++..|+|||++.+..++.++|||||||++|+|++|..||...      .....+..+.+.++..+..-... 
T Consensus       173 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~------~~~~~~~~i~~~~~~~~~~~~~~~  246 (326)
T 1blx_A          173 QMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGS------SDVDQLGKILDVIGLPGEEDWPRD  246 (326)
T ss_dssp             GGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCCCCGGGSCTT
T ss_pred             CCCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCC------CHHHHHHHHHHHcCCCCcccCccc
Confidence              233457899999999999988999999999999999999999999866      35667777777777665432111 


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                      .......+...         .....       ..+...++..+.+||.+||+.||++|||+.|+|+||||+.....
T Consensus       247 ~~~~~~~~~~~---------~~~~~-------~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~  306 (326)
T 1blx_A          247 VALPRQAFHSK---------SAQPI-------EKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYFQDLERC  306 (326)
T ss_dssp             CSSCGGGSCCC---------CCCCG-------GGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTCCCC
T ss_pred             cccchhhhccc---------Ccchh-------hhccccCCHHHHHHHHHHcCCCcccCCCHHHHhcCccccccchh
Confidence            11000000000         00000       01234456789999999999999999999999999999976543

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=3.6e-43  Score=361.28  Aligned_cols=255  Identities=20%  Similarity=0.350  Sum_probs=208.5

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH----hHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ----FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~----~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      .++|++.++||+|+||+||+|++..+++.||+|+++....    ....+.+|.+++..+      +|+||++++++|.. 
T Consensus        73 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~------~hp~Iv~l~~~~~~-  145 (437)
T 4aw2_A           73 REDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNG------DSKWITTLHYAFQD-  145 (437)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHS------CTTTBCCEEEEEEC-
T ss_pred             hhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhC------CCCCEEEEEEEEee-
Confidence            4789999999999999999999999999999999876432    123488899999988      89999999999885 


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                         ...+|+||||| +++|.+++.... ..+++..++.++.||+.||+|||+. ||+||||||+|||+            
T Consensus       146 ---~~~~~lV~Ey~~gg~L~~~l~~~~-~~l~e~~~~~~~~qi~~aL~~LH~~-giiHrDLKp~NILl------------  208 (437)
T 4aw2_A          146 ---DNNLYLVMDYYVGGDLLTLLSKFE-DRLPEEMARFYLAEMVIAIDSVHQL-HYVHRDIKPDNILM------------  208 (437)
T ss_dssp             ---SSEEEEEECCCTTCBHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEE------------
T ss_pred             ---CCEEEEEEecCCCCcHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHHhC-CeEecccCHHHeeE------------
Confidence               36899999999 899999986532 4599999999999999999999996 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                  +..+.+||+|||++......
T Consensus       209 ------------------------------------------------------------~~~g~vkL~DFGla~~~~~~  228 (437)
T 4aw2_A          209 ------------------------------------------------------------DMNGHIRLADFGSCLKLMED  228 (437)
T ss_dssp             ------------------------------------------------------------CTTSCEEECCCTTCEECCTT
T ss_pred             ------------------------------------------------------------cCCCCEEEcchhhhhhcccC
Confidence                                                                        44678999999999754322


Q ss_pred             ----cccCCCCCCccChHHhh-----cCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCH
Q 013220          270 ----FAEEIQTRQYRAPEVIL-----RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  340 (447)
Q Consensus       270 ----~~~~~gt~~y~aPE~l~-----~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~  340 (447)
                          ....+||+.|+|||++.     ...++.++|||||||++|+|++|+.||...+      .......++...     
T Consensus       229 ~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~------~~~~~~~i~~~~-----  297 (437)
T 4aw2_A          229 GTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAES------LVETYGKIMNHK-----  297 (437)
T ss_dssp             SCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSS------HHHHHHHHHTHH-----
T ss_pred             CCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCC------hhHHHHhhhhcc-----
Confidence                23358999999999997     4468999999999999999999999997652      222222222110     


Q ss_pred             HhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCC---hhhHHHHHHHHhhccccCCCC--CCChHHHhcCccc
Q 013220          341 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFS---ETDAREFAEFLVPLLDFTPEK--RPTAQQCLQHPWL  415 (447)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~ll~~~L~~dP~k--Rpta~elL~hp~f  415 (447)
                                                         ....++   ..+++++.+||++||+.+|++  |++++|+++||||
T Consensus       298 -----------------------------------~~~~~p~~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~Hpff  342 (437)
T 4aw2_A          298 -----------------------------------ERFQFPTQVTDVSENAKDLIRRLICSREHRLGQNGIEDFKKHPFF  342 (437)
T ss_dssp             -----------------------------------HHCCCCSSCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHTSGGG
T ss_pred             -----------------------------------ccccCCcccccCCHHHHHHHHHHhcccccccCCCCHHHHhCCCcc
Confidence                                               001111   235778999999999998888  9999999999999


Q ss_pred             cccc
Q 013220          416 SLRN  419 (447)
Q Consensus       416 ~~~~  419 (447)
                      +..+
T Consensus       343 ~~i~  346 (437)
T 4aw2_A          343 SGID  346 (437)
T ss_dssp             TTCC
T ss_pred             CCCC
Confidence            8754

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=5.5e-43  Score=344.51  Aligned_cols=253  Identities=21%  Similarity=0.333  Sum_probs=198.9

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEech--hHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC-
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKS--AAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP-  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~--~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~-  112 (447)
                      ++|++.+.||+|+||.||+|++..+++.||||+++.  .....+.+.+|+++++.+      +|+||++++++|..... 
T Consensus         6 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~hpniv~~~~~~~~~~~~   79 (332)
T 3qd2_B            6 TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKL------EHPGIVRYFNAWLETPPE   79 (332)
T ss_dssp             HHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSC------CCTTBCCEEEEEEECCSC
T ss_pred             hcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhC------CCCCEeeEEEEEEEeccc
Confidence            579999999999999999999999999999998763  233456789999999999      79999999998865421 


Q ss_pred             ----------------------------------------------------CcceEEEEEecc-cccHHHHHHhhcc-C
Q 013220          113 ----------------------------------------------------NGQHLCMVLEFL-GDSLLRLIKYSRY-K  138 (447)
Q Consensus       113 ----------------------------------------------------~~~~~~lvmE~~-~~~L~~~~~~~~~-~  138 (447)
                                                                          ...+.++||||| +++|.+++..... .
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~  159 (332)
T 3qd2_B           80 KWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLE  159 (332)
T ss_dssp             HHHHHHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGG
T ss_pred             hhhhhhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCcc
Confidence                                                                123589999999 8899998865332 2


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHH
Q 013220          139 GLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKL  218 (447)
Q Consensus       139 ~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (447)
                      ..+...+..++.||+.||+|||++ ||+||||||+||++                                         
T Consensus       160 ~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dlkp~NIll-----------------------------------------  197 (332)
T 3qd2_B          160 DREHGVCLHIFIQIAEAVEFLHSK-GLMHRDLKPSNIFF-----------------------------------------  197 (332)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEE-----------------------------------------
T ss_pred             chhhHHHHHHHHHHHHHHHHHHhC-CeeecCCCcccEEE-----------------------------------------
Confidence            245567899999999999999997 99999999999999                                         


Q ss_pred             HHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---------------cccCCCCCCccChH
Q 013220          219 KRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---------------FAEEIQTRQYRAPE  283 (447)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---------------~~~~~gt~~y~aPE  283 (447)
                                                     +....+||+|||++......               ....+||+.|+|||
T Consensus       198 -------------------------------~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE  246 (332)
T 3qd2_B          198 -------------------------------TMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPE  246 (332)
T ss_dssp             -------------------------------CTTCCEEECCCTTCEECSCC--------------CCCSCC-CGGGSCHH
T ss_pred             -------------------------------eCCCCEEEeecCcccccccchhhccccccccccccccccCCCcCccChH
Confidence                                           33567999999999765432               23346899999999


Q ss_pred             HhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHh-CCCCHHhhhCCCCccchhcccchhhhh
Q 013220          284 VILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI-GKMPRKIAIGGAQSKDYFDRHGDLKRI  362 (447)
Q Consensus       284 ~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (447)
                      .+.+..++.++|||||||++|+|++|..|+..           ....+.... +..+.                      
T Consensus       247 ~~~~~~~~~~~Di~slG~il~el~~~~~~~~~-----------~~~~~~~~~~~~~~~----------------------  293 (332)
T 3qd2_B          247 QIHGNNYSHKVDIFSLGLILFELLYSFSTQME-----------RVRIITDVRNLKFPL----------------------  293 (332)
T ss_dssp             HHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHH-----------HHHHHHHHHTTCCCH----------------------
T ss_pred             HhcCCCCcchhhHHHHHHHHHHHHHcCCChhH-----------HHHHHHHhhccCCCc----------------------
Confidence            99999999999999999999999998765421           111111111 11111                      


Q ss_pred             hhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccc
Q 013220          363 RRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~  417 (447)
                                       .....++.+.+||.+||+.||++|||++|+|+||||+.
T Consensus       294 -----------------~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~~~f~~  331 (332)
T 3qd2_B          294 -----------------LFTQKYPQEHMMVQDMLSPSPTERPEATDIIENAIFEN  331 (332)
T ss_dssp             -----------------HHHHHCHHHHHHHHHHHCSSGGGSCCHHHHHHSTTCCC
T ss_pred             -----------------ccccCChhHHHHHHHHccCCCCcCCCHHHHhhchhhhc
Confidence                             01223457789999999999999999999999999985

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=1.6e-43  Score=356.99  Aligned_cols=252  Identities=25%  Similarity=0.352  Sum_probs=201.2

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH----hHHHHHHHHHHH-HHhhcCCCCCcceeeeecccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ----FAQAALHEIEVL-SAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~----~~~~~~~E~~~l-~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      .++|++.+.||+|+||.||+|++..+++.||+|+++....    ....+..|..++ +.+      .|+||++++++|..
T Consensus        37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~------~hp~Iv~l~~~~~~  110 (373)
T 2r5t_A           37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNV------KHPFLVGLHFSFQT  110 (373)
T ss_dssp             GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCC------CCTTBCCEEEEEEC
T ss_pred             hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhC------CCCCCCCEEEEEEe
Confidence            3789999999999999999999999999999999876532    122344444432 223      89999999999885


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                      .    ..+|+||||+ |++|.+.+...  ..+++..++.++.||+.||+|||++ ||+||||||+||++           
T Consensus       111 ~----~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-givHrDlkp~NIll-----------  172 (373)
T 2r5t_A          111 A----DKLYFVLDYINGGELFYHLQRE--RCFLEPRARFYAAEIASALGYLHSL-NIVYRDLKPENILL-----------  172 (373)
T ss_dssp             S----SEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEE-----------
T ss_pred             C----CEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CceecCCCHHHEEE-----------
Confidence            3    6899999999 88999888754  3489999999999999999999996 99999999999999           


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc-
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN-  267 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~-  267 (447)
                                                                                   +.++.+||+|||++.... 
T Consensus       173 -------------------------------------------------------------~~~g~ikL~DFG~a~~~~~  191 (373)
T 2r5t_A          173 -------------------------------------------------------------DSQGHIVLTDFGLCKENIE  191 (373)
T ss_dssp             -------------------------------------------------------------CTTSCEEECCCCBCGGGBC
T ss_pred             -------------------------------------------------------------CCCCCEEEeeCcccccccc
Confidence                                                                         446789999999997532 


Q ss_pred             --cccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          268 --KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       268 --~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                        ......+||+.|+|||++.+..++.++|+|||||++|+|++|..||...+      ......                
T Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~------~~~~~~----------------  249 (373)
T 2r5t_A          192 HNSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRN------TAEMYD----------------  249 (373)
T ss_dssp             CCCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSB------HHHHHH----------------
T ss_pred             CCCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCC------HHHHHH----------------
Confidence              23345689999999999999999999999999999999999999997652      111111                


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCCh----HHHhcCccccccc
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA----QQCLQHPWLSLRN  419 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta----~elL~hp~f~~~~  419 (447)
                                                .++.....++..++..+.+||.+||+.||++||++    .++++||||+..+
T Consensus       250 --------------------------~i~~~~~~~~~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~i~~h~~f~~~~  301 (373)
T 2r5t_A          250 --------------------------NILNKPLQLKPNITNSARHLLEGLLQKDRTKRLGAKDDFMEIKSHVFFSLIN  301 (373)
T ss_dssp             --------------------------HHHHSCCCCCSSSCHHHHHHHHHHTCSSGGGSTTTTTTHHHHHTSGGGTTCC
T ss_pred             --------------------------HHHhcccCCCCCCCHHHHHHHHHHcccCHHhCCCCCCCHHHHhCCccccCCC
Confidence                                      12222233455567789999999999999999997    6999999998753

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=6.1e-44  Score=359.03  Aligned_cols=267  Identities=12%  Similarity=0.095  Sum_probs=196.8

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEech----hHHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc---
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKS----AAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK---  108 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~----~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~---  108 (447)
                      ..|++.++||+|+||+||+|++..+++.||+|++..    .....+.+.+|+++++.+.+    .|+||++++..+.   
T Consensus        62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~----~hp~iv~~~~~~~~p~  137 (371)
T 3q60_A           62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG----ESPEEARDRRRLLLPS  137 (371)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC--------------CBCCCC
T ss_pred             eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc----cChhhhhhceeEEeee
Confidence            359999999999999999999999999999998876    33456678899998988864    5899888665543   


Q ss_pred             ----ccCC-------------CcceEEEEEecccccHHHHHHhhccCCCCHHHH------HHHHHHHHHHHHHHHhhCCc
Q 013220          109 ----HAGP-------------NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKV------REICKYILTGLDYLHRELGI  165 (447)
Q Consensus       109 ----~~~~-------------~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~------~~i~~qil~aL~~lH~~~gI  165 (447)
                          ..+.             ....+|+|||||+++|.+++.... ..+.....      ..++.||+.||+|||++ ||
T Consensus       138 d~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~-~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~-~i  215 (371)
T 3q60_A          138 DAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLD-FVYVFRGDEGILALHILTAQLIRLAANLQSK-GL  215 (371)
T ss_dssp             EEEEETTSCSSSBCSCC---CCEEEEEEEECCCSEEHHHHHHHHH-HSCCCCHHHHHHHHHHHHHHHHHHHHHHHHT-TE
T ss_pred             hheecCCCCCeeeccCCcccceeeeEEEEecCCCCCHHHHHHHhc-cccchhhhhhhhhHHHHHHHHHHHHHHHHHC-CC
Confidence                1110             114589999999989999987643 23444455      57779999999999996 99


Q ss_pred             ccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCC
Q 013220          166 IHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPE  245 (447)
Q Consensus       166 iH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (447)
                      +||||||+|||+                                                                    
T Consensus       216 vHrDikp~NIll--------------------------------------------------------------------  227 (371)
T 3q60_A          216 VHGHFTPDNLFI--------------------------------------------------------------------  227 (371)
T ss_dssp             EETTCSGGGEEE--------------------------------------------------------------------
T ss_pred             ccCcCCHHHEEE--------------------------------------------------------------------
Confidence            999999999999                                                                    


Q ss_pred             ccCCCcccceeEeecCcccccccccccCCCCCCccChHHhhc--CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCC
Q 013220          246 RCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR--AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCE  323 (447)
Q Consensus       246 ~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~l~~--~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~  323 (447)
                          +.++.+||+|||++...........+|+.|+|||++.+  ..++.++|||||||++|+|++|..||......... 
T Consensus       228 ----~~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~-  302 (371)
T 3q60_A          228 ----MPDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKG-  302 (371)
T ss_dssp             ----CTTSCEEECCGGGEEETTCEEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCTTCTT-
T ss_pred             ----CCCCCEEEEecceeeecCCCccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCccccc-
Confidence                44567999999999877655545667799999999987  67899999999999999999999999866321100 


Q ss_pred             chHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhc--CCChhhHHHHHHHHhhccccCCC
Q 013220          324 DEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKY--RFSETDAREFAEFLVPLLDFTPE  401 (447)
Q Consensus       324 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~ll~~~L~~dP~  401 (447)
                                                  .+....            .........  .....+++.+.+||.+||+.||+
T Consensus       303 ----------------------------~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~  342 (371)
T 3q60_A          303 ----------------------------SWKRPS------------LRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRR  342 (371)
T ss_dssp             ----------------------------CCCBCC------------TTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTT
T ss_pred             ----------------------------chhhhh------------hhhccccccchhhccCCCHHHHHHHHHHcCCChh
Confidence                                        000000            000000000  11134577899999999999999


Q ss_pred             CCCChHHHhcCcccccccCC
Q 013220          402 KRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       402 kRpta~elL~hp~f~~~~~~  421 (447)
                      +|||++|+|+||||+.....
T Consensus       343 ~Rpt~~e~l~hp~f~~~~~~  362 (371)
T 3q60_A          343 RRLLPLEAMETPEFLQLQNE  362 (371)
T ss_dssp             TCCCHHHHTTSHHHHHHHHH
T ss_pred             hCCCHHHHhcCHHHHHHHHH
Confidence            99999999999999976543

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=7e-43  Score=348.02  Aligned_cols=281  Identities=30%  Similarity=0.454  Sum_probs=214.8

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH------hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ------FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~------~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      ++|++.+.||+|+||+||+|++..+++.||+|++.....      ..+.+.+|+++++.+      .|+||+++++++..
T Consensus        10 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~   83 (346)
T 1ua2_A           10 KRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQEL------SHPNIIGLLDAFGH   83 (346)
T ss_dssp             ---CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHC------CCTTBCCEEEEECC
T ss_pred             cccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhC------CCCCCCeEEEEEee
Confidence            689999999999999999999999999999998764321      134678899999999      78999999999875


Q ss_pred             cCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          110 AGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                      .    ...++||||++++|...+.... ..+++..+..++.|++.||+|||++ ||+||||||+||++            
T Consensus        84 ~----~~~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~Dlkp~Nil~------------  145 (346)
T 1ua2_A           84 K----SNISLVFDFMETDLEVIIKDNS-LVLTPSHIKAYMLMTLQGLEYLHQH-WILHRDLKPNNLLL------------  145 (346)
T ss_dssp             T----TCCEEEEECCSEEHHHHHTTCC-SSCCSSHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEE------------
T ss_pred             C----CceEEEEEcCCCCHHHHHHhcC-cCCCHHHHHHHHHHHHHHHHHHHHC-CEECCCCCHHHEEE------------
Confidence            3    6799999999778888775432 4588999999999999999999997 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                  +.++.+||+|||++......
T Consensus       146 ------------------------------------------------------------~~~~~~kl~Dfg~a~~~~~~  165 (346)
T 1ua2_A          146 ------------------------------------------------------------DENGVLKLADFGLAKSFGSP  165 (346)
T ss_dssp             ------------------------------------------------------------CTTCCEEECCCGGGSTTTSC
T ss_pred             ------------------------------------------------------------cCCCCEEEEecccceeccCC
Confidence                                                                        34567999999999765432


Q ss_pred             ---cccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          270 ---FAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       270 ---~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                         ....++|+.|+|||.+.+. .++.++|||||||++|+|++|..||.+.      .....+..+.+..+..+......
T Consensus       166 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~  239 (346)
T 1ua2_A          166 NRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGD------SDLDQLTRIFETLGTPTEEQWPD  239 (346)
T ss_dssp             CCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHHHCCCCTTTSSS
T ss_pred             cccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCC------CHHHHHHHHHHHcCCCChhhhhh
Confidence               3345789999999999764 5789999999999999999999999766      46677777777777766443211


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccC
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~  420 (447)
                      .....++....       ......+..       .....+..+.+||.+||+.||++|||++|+|+||||+....
T Consensus       240 ~~~~~~~~~~~-------~~~~~~~~~-------~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h~~f~~~~~  300 (346)
T 1ua2_A          240 MCSLPDYVTFK-------SFPGIPLHH-------IFSAAGDDLLDLIQGLFLFNPCARITATQALKMKYFSNRPG  300 (346)
T ss_dssp             TTSSTTCCCCC-------CCCCCCHHH-------HCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSGGGTSSSC
T ss_pred             hccCccccccc-------ccCCCChHH-------hhccCCHHHHHHHHHHhccChhhCCCHHHHhcChhhhcCCC
Confidence            11111110000       000000111       11344678999999999999999999999999999987543

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.9e-43  Score=347.24  Aligned_cols=255  Identities=25%  Similarity=0.395  Sum_probs=201.2

Q ss_pred             cCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           34 NGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        34 ~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      .+++|++.++||+|+||+||+|.+ .+++.||+|++...   ....+.+.+|+++++.+.+    +|+||+++++++.. 
T Consensus         7 ~~~~y~i~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~----~~~~iv~~~~~~~~-   80 (343)
T 3dbq_A            7 KGRIYSILKQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQ----HSDKIIRLYDYEIT-   80 (343)
T ss_dssp             SSCEEEEEEEESCCSSEEEEEEEC-TTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTT----TCTTBCCEEEEEEC-
T ss_pred             ecCEEEEEEEEecCCCeEEEEEEe-CCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhh----cCCceEEEeeeEee-
Confidence            368899999999999999999987 46889999987643   2345678899999999963    34899999999875 


Q ss_pred             CCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          111 GPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       111 ~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                         ...+++|||+.+++|.+++...  ..+++..+..++.||+.||+|||++ ||+||||||+|||+.            
T Consensus        81 ---~~~~~lv~e~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~al~~lH~~-~iiHrDikp~NIll~------------  142 (343)
T 3dbq_A           81 ---DQYIYMVMECGNIDLNSWLKKK--KSIDPWERKSYWKNMLEAVHTIHQH-GIVHSDLKPANFLIV------------  142 (343)
T ss_dssp             ---SSEEEEEECCCSEEHHHHHHHS--CCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEEE------------
T ss_pred             ---CCEEEEEEeCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCcceEEEE------------
Confidence               3689999997799999998754  4589999999999999999999996 999999999999993            


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-  269 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-  269 (447)
                                                                                   +..+||+|||++...... 
T Consensus       143 -------------------------------------------------------------~~~~kl~DFG~a~~~~~~~  161 (343)
T 3dbq_A          143 -------------------------------------------------------------DGMLKLIDFGIANQMQPDT  161 (343)
T ss_dssp             -------------------------------------------------------------TTEEEECCCSSSCCC----
T ss_pred             -------------------------------------------------------------CCcEEEeecccccccCccc
Confidence                                                                         245999999999755422 


Q ss_pred             ----cccCCCCCCccChHHhhc-----------CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHH
Q 013220          270 ----FAEEIQTRQYRAPEVILR-----------AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMEL  334 (447)
Q Consensus       270 ----~~~~~gt~~y~aPE~l~~-----------~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~  334 (447)
                          ....+||+.|+|||++.+           ..++.++|||||||++|+|++|..||....     .   ....+...
T Consensus       162 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~-----~---~~~~~~~~  233 (343)
T 3dbq_A          162 TSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII-----N---QISKLHAI  233 (343)
T ss_dssp             --------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCC-----S---HHHHHHHH
T ss_pred             ccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhh-----h---HHHHHHHH
Confidence                224579999999999975           568899999999999999999999996532     1   11222221


Q ss_pred             hCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcc
Q 013220          335 IGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW  414 (447)
Q Consensus       335 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~  414 (447)
                      +....                                     ...++...+..+.+||.+||+.||.+|||+.|+|+|||
T Consensus       234 ~~~~~-------------------------------------~~~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~hp~  276 (343)
T 3dbq_A          234 IDPNH-------------------------------------EIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPY  276 (343)
T ss_dssp             HCTTS-------------------------------------CCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHH
T ss_pred             hcCCc-------------------------------------ccCCcccCCHHHHHHHHHHcCCChhHCCCHHHHHhCcc
Confidence            11100                                     11133344568899999999999999999999999999


Q ss_pred             cccc
Q 013220          415 LSLR  418 (447)
Q Consensus       415 f~~~  418 (447)
                      |+..
T Consensus       277 ~~~~  280 (343)
T 3dbq_A          277 VQIQ  280 (343)
T ss_dssp             HHSC
T ss_pred             cccc
Confidence            9854

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=6.4e-43  Score=343.90  Aligned_cols=283  Identities=22%  Similarity=0.329  Sum_probs=215.6

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      +++|++.+.||+|+||+||+|++..+++.||+|++....  ...+.+.+|+++++.+      .|+||+++++++...  
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~~--   79 (319)
T 4euu_A            8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKL------NHKNIVKLFAIEEET--   79 (319)
T ss_dssp             SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHC------CCTTBCCEEEEEECT--
T ss_pred             CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhc------CCCCcceEEEEeecC--
Confidence            489999999999999999999999999999999987543  2346678999999999      789999999988754  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRY-KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~-~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                      .....++||||+ +++|.+++..... ..+++..+..++.|++.||+|||++ ||+||||||+||++....         
T Consensus        80 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~-~ivH~Dlkp~NIll~~~~---------  149 (319)
T 4euu_A           80 TTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN-GIVHRNIKPGNIMRVIGE---------  149 (319)
T ss_dssp             TTCCEEEEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEEECT---------
T ss_pred             CCceEEEEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC-CEecCCCCHHHEEEeccC---------
Confidence            345889999999 8899998875432 2389999999999999999999997 999999999999984321         


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-  269 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-  269 (447)
                                                                                 +....+||+|||++...... 
T Consensus       150 -----------------------------------------------------------~~~~~~kL~Dfg~a~~~~~~~  170 (319)
T 4euu_A          150 -----------------------------------------------------------DGQSVYKLTDFGAARELEDDE  170 (319)
T ss_dssp             -----------------------------------------------------------TSCEEEEECCCTTCEECCTTC
T ss_pred             -----------------------------------------------------------CCCceEEEccCCCceecCCCC
Confidence                                                                       23467999999999765432 


Q ss_pred             -cccCCCCCCccChHHhh--------cCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCH
Q 013220          270 -FAEEIQTRQYRAPEVIL--------RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  340 (447)
Q Consensus       270 -~~~~~gt~~y~aPE~l~--------~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~  340 (447)
                       .....||+.|+|||++.        +..++.++|||||||++|+|++|..||....     ........+..++...|.
T Consensus       171 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~-----~~~~~~~~~~~~~~~~p~  245 (319)
T 4euu_A          171 QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFE-----GPRRNKEVMYKIITGKPS  245 (319)
T ss_dssp             CBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTT-----CGGGCHHHHHHHHHHCCT
T ss_pred             ceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC-----ccchhHHHHHHHhcCCCc
Confidence             33457899999999987        4678899999999999999999999997553     122233334444433332


Q ss_pred             HhhhCCCCc-cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcc
Q 013220          341 KIAIGGAQS-KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW  414 (447)
Q Consensus       341 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~  414 (447)
                      ......... ...+.               +...+.....++...+..+.+||.+||+.||++|||++|+|+||=
T Consensus       246 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~  305 (319)
T 4euu_A          246 GAISGVQKAENGPID---------------WSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETS  305 (319)
T ss_dssp             TCCEEEECSTTCCEE---------------EESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHH
T ss_pred             ccchhhhcccCCccc---------------cCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccH
Confidence            211100000 00000               000111122356778889999999999999999999999999985

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=4.9e-43  Score=365.93  Aligned_cols=267  Identities=29%  Similarity=0.441  Sum_probs=208.7

Q ss_pred             CccccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcce
Q 013220           23 GYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKC   99 (447)
Q Consensus        23 ~~~~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~   99 (447)
                      .|.+...|++.  ++|++.++||+|+||+||+|++..++..||+|++....   .....+.+|+++++.+      +|||
T Consensus        26 ~~~~~~~~~~~--~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l------~hpn   97 (494)
T 3lij_A           26 MFITSKKGHLS--EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLL------DHPN   97 (494)
T ss_dssp             GGCCCCBCCHH--HHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTC------CCTT
T ss_pred             heeecCCCchh--cCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhC------CCCC
Confidence            34444444443  47999999999999999999999999999999887543   2346788999999998      8999


Q ss_pred             eeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEee
Q 013220          100 VIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV  178 (447)
Q Consensus       100 Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~  178 (447)
                      |+++++++..    ....|+||||| +++|.+.+...  ..+++..+..++.||+.||+|||++ ||+||||||+||++.
T Consensus        98 iv~~~~~~~~----~~~~~lv~e~~~~g~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~-~ivH~Dlkp~Nil~~  170 (494)
T 3lij_A           98 IMKLYDFFED----KRNYYLVMECYKGGELFDEIIHR--MKFNEVDAAVIIKQVLSGVTYLHKH-NIVHRDLKPENLLLE  170 (494)
T ss_dssp             BCCEEEEEEC----SSEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEES
T ss_pred             CCeEEEEEEe----CCEEEEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CceeccCChhhEEEe
Confidence            9999999875    36899999999 88998887654  3589999999999999999999996 999999999999994


Q ss_pred             ecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEe
Q 013220          179 STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVV  258 (447)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~  258 (447)
                      ..                                                                     .....+||+
T Consensus       171 ~~---------------------------------------------------------------------~~~~~~kl~  181 (494)
T 3lij_A          171 SK---------------------------------------------------------------------EKDALIKIV  181 (494)
T ss_dssp             CS---------------------------------------------------------------------STTCCEEEC
T ss_pred             CC---------------------------------------------------------------------CCCCcEEEE
Confidence            31                                                                     224569999


Q ss_pred             ecCccccccc--ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhC
Q 013220          259 DFGNACRANK--QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIG  336 (447)
Q Consensus       259 Dfg~a~~~~~--~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g  336 (447)
                      |||++.....  .....+||+.|+|||++. ..++.++|||||||++|+|++|..||.+.+      .......+.....
T Consensus       182 DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~------~~~~~~~i~~~~~  254 (494)
T 3lij_A          182 DFGLSAVFENQKKMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQT------DQEILRKVEKGKY  254 (494)
T ss_dssp             CCTTCEECBTTBCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHTCC
T ss_pred             ECCCCeECCCCccccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHhCCC
Confidence            9999976543  234567999999999986 468999999999999999999999997652      2222222222111


Q ss_pred             CCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccc
Q 013220          337 KMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  416 (447)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~  416 (447)
                      ..+..                                      ....+++.+.+||.+||+.||.+|||++|+|+||||+
T Consensus       255 ~~~~~--------------------------------------~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~hp~~~  296 (494)
T 3lij_A          255 TFDSP--------------------------------------EWKNVSEGAKDLIKQMLQFDSQRRISAQQALEHPWIK  296 (494)
T ss_dssp             CCCSG--------------------------------------GGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTCHHHH
T ss_pred             CCCch--------------------------------------hcccCCHHHHHHHHHHCCCChhhCccHHHHhcCcccc
Confidence            11100                                      0123466899999999999999999999999999998


Q ss_pred             cc
Q 013220          417 LR  418 (447)
Q Consensus       417 ~~  418 (447)
                      ..
T Consensus       297 ~~  298 (494)
T 3lij_A          297 EM  298 (494)
T ss_dssp             HH
T ss_pred             cC
Confidence            75

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=1.5e-42  Score=346.33  Aligned_cols=302  Identities=28%  Similarity=0.451  Sum_probs=227.6

Q ss_pred             CCccccccCcc---ccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCC
Q 013220           22 GGYHAVRVGDL---FNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPS   95 (447)
Q Consensus        22 ~~~~~~~~g~~---~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~   95 (447)
                      ++|++...+..   + .++|.+.+.||+|+||+||+|++..+++.||||++...   ......+.+|+.+++.+      
T Consensus         8 ~~~~~~~~~~~~~~l-~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l------   80 (353)
T 3coi_A            8 KGFYKQDVNKTAWEL-PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHM------   80 (353)
T ss_dssp             HHEEEEEETTEEEEE-ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHC------
T ss_pred             CCcEEEeecCccccc-CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhc------
Confidence            35555444321   2 37899999999999999999999999999999988643   23356788999999999      


Q ss_pred             CcceeeeecccccccCCC--cceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCC
Q 013220           96 NEKCVIRLIDHFKHAGPN--GQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPE  173 (447)
Q Consensus        96 ~~~~Iv~~~~~~~~~~~~--~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~  173 (447)
                      .|+||+++++++......  ....++||||++++|.+.+.    ..+++..+..++.||+.||+|||++ ||+||||||+
T Consensus        81 ~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~----~~~~~~~~~~i~~qi~~al~~LH~~-~ivH~dlkp~  155 (353)
T 3coi_A           81 QHENVIGLLDVFTPASSLRNFYDFYLVMPFMQTDLQKIMG----LKFSEEKIQYLVYQMLKGLKYIHSA-GVVHRDLKPG  155 (353)
T ss_dssp             CCTTBCCCSEEECSCSSGGGCCCCEEEEECCSEEGGGTTT----SCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSSCCGG
T ss_pred             CCCCcccHhheEecccccccceeEEEEeccccCCHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHH
Confidence            789999999998764211  13469999999878776553    3489999999999999999999997 9999999999


Q ss_pred             CeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCccc
Q 013220          174 NILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDM  253 (447)
Q Consensus       174 Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (447)
                      ||++                                                                        +..+
T Consensus       156 NIl~------------------------------------------------------------------------~~~~  163 (353)
T 3coi_A          156 NLAV------------------------------------------------------------------------NEDC  163 (353)
T ss_dssp             GEEE------------------------------------------------------------------------CTTC
T ss_pred             HEeE------------------------------------------------------------------------CCCC
Confidence            9999                                                                        3456


Q ss_pred             ceeEeecCcccccccccccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHH
Q 013220          254 RCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMM  332 (447)
Q Consensus       254 ~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~  332 (447)
                      .++|+|||++..........++|+.|+|||.+.+ ..++.++|||||||++|+|++|..||.+.      +....+..+.
T Consensus       164 ~~kl~Dfg~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~------~~~~~~~~i~  237 (353)
T 3coi_A          164 ELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGK------DYLDQLTQIL  237 (353)
T ss_dssp             CEEECSTTCTTC--------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSS------CHHHHHHHHH
T ss_pred             cEEEeecccccCCCCCccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHH
Confidence            7999999999876666666789999999999987 57899999999999999999999999866      4667788888


Q ss_pred             HHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          333 ELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       333 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                      +..|..+..+.........       .............    .-.......+..+.+||.+||+.||++|||++|+|+|
T Consensus       238 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~h  306 (353)
T 3coi_A          238 KVTGVPGTEFVQKLNDKAA-------KSYIQSLPQTPRK----DFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH  306 (353)
T ss_dssp             HHHCBCCHHHHTTCSCHHH-------HHHHHTSCBCSSC----CTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             HHhCCCCHHHHHHHhhHHH-------HHHHHhCcCCCCc----cHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence            8888888776433322110       0000000000000    0001223457789999999999999999999999999


Q ss_pred             cccccccCCccc
Q 013220          413 PWLSLRNSTRDE  424 (447)
Q Consensus       413 p~f~~~~~~~~~  424 (447)
                      |||+.......+
T Consensus       307 p~f~~~~~~~~~  318 (353)
T 3coi_A          307 PFFEPFRDPEEE  318 (353)
T ss_dssp             GGGTTTCCGGGC
T ss_pred             cchhhccCcccc
Confidence            999976654433

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=3.9e-44  Score=361.33  Aligned_cols=254  Identities=15%  Similarity=0.176  Sum_probs=199.4

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh----HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA----AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~----~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      .++|++.+.||+|+||+||+|++..+++.||||++...    ....+.+.+|+++++.+...   .|+||+++++.+...
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l---~hpniv~~~~~~~~~  148 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGI---KNQKQAKVHLRFIFP  148 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTC---CSHHHHHHHHCBCCC
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhcccc---CCHHHHHHHhhhhhh
Confidence            36899999999999999999999899999999987632    23456788999777776533   799999999554421


Q ss_pred             C-------C--------Ccc-----eEEEEEecccccHHHHHHhhccCCCCH-------HHHHHHHHHHHHHHHHHHhhC
Q 013220          111 G-------P--------NGQ-----HLCMVLEFLGDSLLRLIKYSRYKGLEL-------NKVREICKYILTGLDYLHREL  163 (447)
Q Consensus       111 ~-------~--------~~~-----~~~lvmE~~~~~L~~~~~~~~~~~l~~-------~~~~~i~~qil~aL~~lH~~~  163 (447)
                      .       .        +..     ..|+||||++++|.+++.....  +++       ..+..++.||+.||+|||++ 
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~~g~L~~~l~~~~~--~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-  225 (377)
T 3byv_A          149 FDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLS--HSSTHKSLVHHARLQLTLQVIRLLASLHHY-  225 (377)
T ss_dssp             SEEEECTTSCSEEEC------CEEESEEEEEECCSEEHHHHHHHHHH--TTTTTHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             hhhhhccCCccccccccCCCceEEEEEEEEEeccCCCHHHHHHhccc--cccccccccHHHHHHHHHHHHHHHHHHHhC-
Confidence            1       0        001     3899999998899998875432  444       77778999999999999997 


Q ss_pred             CcccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCC
Q 013220          164 GIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPK  243 (447)
Q Consensus       164 gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (447)
                      ||+||||||+|||+                                                                  
T Consensus       226 ~ivHrDikp~NIll------------------------------------------------------------------  239 (377)
T 3byv_A          226 GLVHTYLRPVDIVL------------------------------------------------------------------  239 (377)
T ss_dssp             TEECSCCCGGGEEE------------------------------------------------------------------
T ss_pred             CeecCCCCHHHEEE------------------------------------------------------------------
Confidence            99999999999999                                                                  


Q ss_pred             CCccCCCcccceeEeecCcccccccccccCCCCCCccChHHhhcC-----------CCCccchhHhHHHHHHHHhhCCCC
Q 013220          244 PERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRA-----------GYSFSVDMWSFACTAFELATGDML  312 (447)
Q Consensus       244 ~~~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~l~~~-----------~~~~~~DiwSlGvil~~l~~g~~P  312 (447)
                            +.++.+||+|||++..........+| +.|+|||++.+.           .++.++|||||||++|+|++|..|
T Consensus       240 ------~~~~~~kL~DFG~a~~~~~~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~~P  312 (377)
T 3byv_A          240 ------DQRGGVFLTGFEHLVRDGARVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLP  312 (377)
T ss_dssp             ------CTTCCEEECCGGGCEETTCEEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSSCC
T ss_pred             ------cCCCCEEEEechhheecCCcccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHHHCCCC
Confidence                  34567999999999876666566678 999999999987           899999999999999999999999


Q ss_pred             CCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHH
Q 013220          313 FAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFL  392 (447)
Q Consensus       313 f~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll  392 (447)
                      |...+....                                                ...+.    .....+++.+.+||
T Consensus       313 f~~~~~~~~------------------------------------------------~~~~~----~~~~~~~~~~~~li  340 (377)
T 3byv_A          313 ITKDAALGG------------------------------------------------SEWIF----RSCKNIPQPVRALL  340 (377)
T ss_dssp             C------CC------------------------------------------------SGGGG----SSCCCCCHHHHHHH
T ss_pred             Ccccccccc------------------------------------------------hhhhh----hhccCCCHHHHHHH
Confidence            975532111                                                00000    01123456899999


Q ss_pred             hhccccCCCCCCChHHHhcCccccccc
Q 013220          393 VPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       393 ~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                      .+||+.||++|||+.|+|+||||+...
T Consensus       341 ~~~L~~dp~~Rpt~~e~l~hp~f~~~~  367 (377)
T 3byv_A          341 EGFLRYPKEDRLLPLQAMETPEYEQLR  367 (377)
T ss_dssp             HHHTCSSGGGCCCHHHHHTSHHHHHHH
T ss_pred             HHHcCCCchhCCCHHHHhhChHHHHHH
Confidence            999999999999999999999998754

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=1e-42  Score=334.97  Aligned_cols=258  Identities=25%  Similarity=0.381  Sum_probs=208.1

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh-HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA-AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      ++|++.+.||+|+||+||+|.+..++..||+|.+... ....+.+.+|+++++.+      .|+||+++++++..    .
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~----~   78 (277)
T 3f3z_A            9 QYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSL------DHPNIIRLYETFED----N   78 (277)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTC------CCTTBCCEEEEEEC----S
T ss_pred             hhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhC------CCCCEeeEEEEEec----C
Confidence            6899999999999999999999999999999987654 23456788999999999      78999999999874    4


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ...++||||+ +++|.+.+...  ..+++..+..++.|++.||+|||++ ||+||||||+||++...             
T Consensus        79 ~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lH~~-~i~H~dlkp~Nil~~~~-------------  142 (277)
T 3f3z_A           79 TDIYLVMELCTGGELFERVVHK--RVFRESDAARIMKDVLSAVAYCHKL-NVAHRDLKPENFLFLTD-------------  142 (277)
T ss_dssp             SEEEEEEECCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEESSS-------------
T ss_pred             CeEEEEEeccCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccCCCCCHHHEEEecC-------------
Confidence            6899999999 88998888654  3489999999999999999999997 99999999999999431             


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--cc
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FA  271 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--~~  271 (447)
                                                                              +....++|+|||.+......  ..
T Consensus       143 --------------------------------------------------------~~~~~~~l~Dfg~~~~~~~~~~~~  166 (277)
T 3f3z_A          143 --------------------------------------------------------SPDSPLKLIDFGLAARFKPGKMMR  166 (277)
T ss_dssp             --------------------------------------------------------STTCCEEECCCTTCEECCTTSCBC
T ss_pred             --------------------------------------------------------CCCCcEEEEecccceeccCccchh
Confidence                                                                    23567999999999755432  33


Q ss_pred             cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccc
Q 013220          272 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  351 (447)
Q Consensus       272 ~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  351 (447)
                      ...||+.|+|||.+.+. ++.++|||||||++|+|++|..||...+      .......+.+.....+...         
T Consensus       167 ~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~------~~~~~~~~~~~~~~~~~~~---------  230 (277)
T 3f3z_A          167 TKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPT------DSEVMLKIREGTFTFPEKD---------  230 (277)
T ss_dssp             CCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHCCCCCCHHH---------
T ss_pred             ccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCCC------HHHHHHHHHhCCCCCCchh---------
Confidence            45789999999998764 8999999999999999999999997652      2222222222111111100         


Q ss_pred             hhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccC
Q 013220          352 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~  420 (447)
                                                   ....++.+.+||.+||+.||++|||+.|+|+||||+...+
T Consensus       231 -----------------------------~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~h~~~~~~~~  270 (277)
T 3f3z_A          231 -----------------------------WLNVSPQAESLIRRLLTKSPKQRITSLQALEHEWFEKQLS  270 (277)
T ss_dssp             -----------------------------HTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTSHHHHHHHC
T ss_pred             -----------------------------hhcCCHHHHHHHHHHccCChhhCcCHHHHhcCHHHhcccc
Confidence                                         0123568899999999999999999999999999987543

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=1.4e-42  Score=343.45  Aligned_cols=281  Identities=26%  Similarity=0.429  Sum_probs=213.1

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.+.||+|+||+||+|++..+++.||+|++...   ....+.+.+|+++++.+      .|+||+++++++...  
T Consensus        25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~~--   96 (331)
T 4aaa_A           25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQL------RHENLVNLLEVCKKK--   96 (331)
T ss_dssp             GGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHC------CCTTBCCEEEEEEET--
T ss_pred             hhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhC------CCCCEeeEEEEeecC--
Confidence            7899999999999999999999999999999987533   23345678899999999      789999999998753  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                        ...++||||+ ++++..+....  ..+++..+..++.|++.||+|||++ ||+||||||+||++              
T Consensus        97 --~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~qi~~~l~~LH~~-~ivH~dlkp~Nil~--------------  157 (331)
T 4aaa_A           97 --KRWYLVFEFVDHTILDDLELFP--NGLDYQVVQKYLFQIINGIGFCHSH-NIIHRDIKPENILV--------------  157 (331)
T ss_dssp             --TEEEEEEECCSEEHHHHHHHST--TCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEE--------------
T ss_pred             --CEEEEEEecCCcchHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHHC-CEEccCcChheEEE--------------
Confidence              6899999999 55555554422  4589999999999999999999997 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                +..+.++|+|||.+......  
T Consensus       158 ----------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~  179 (331)
T 4aaa_A          158 ----------------------------------------------------------SQSGVVKLCDFGFARTLAAPGE  179 (331)
T ss_dssp             ----------------------------------------------------------CTTSCEEECCCTTC--------
T ss_pred             ----------------------------------------------------------cCCCcEEEEeCCCceeecCCcc
Confidence                                                                      34567999999999754322  


Q ss_pred             -cccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          270 -FAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       270 -~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                       .....|++.|+|||.+.+. .++.++|||||||++|+|++|..||...      .....+..+....+..+......  
T Consensus       180 ~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~--  251 (331)
T 4aaa_A          180 VYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGD------SDIDQLYHIMMCLGNLIPRHQEL--  251 (331)
T ss_dssp             ----CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCSCCHHHHHH--
T ss_pred             ccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCC------CcHHHHHHHHHHhCCCChhhhhH--
Confidence             2345789999999999875 6899999999999999999999999876      46677777777777776543211  


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                           +......................    .....++.+.+||.+||+.||++|||++|+|+||||+..
T Consensus       252 -----~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~f~~~  313 (331)
T 4aaa_A          252 -----FNKNPVFAGVRLPEIKEREPLER----RYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHHDFFQMD  313 (331)
T ss_dssp             -----HHHCGGGTTCCCCCCSSCCCHHH----HSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHHHHGG
T ss_pred             -----hhhccccccccCccccccchhhh----cccchhHHHHHHHHHHhccCcccCCCHHHHhcCchhccC
Confidence                 11111000000000000000000    112346789999999999999999999999999999864

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=3.1e-43  Score=365.40  Aligned_cols=255  Identities=27%  Similarity=0.425  Sum_probs=210.5

Q ss_pred             CccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH----hHHHHHHHHHHHHHhhcCCCCCcceeeeecc
Q 013220           30 GDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ----FAQAALHEIEVLSAVADGDPSNEKCVIRLID  105 (447)
Q Consensus        30 g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~----~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~  105 (447)
                      |.+.. ++|.+.+.||+|+||.||+|++..+++.||||++.....    ....+.+|+++++.+      .|+||+++++
T Consensus        11 ~~~~~-~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l------~HpnIv~l~~   83 (476)
T 2y94_A           11 GRVKI-GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLF------RHPHIIKLYQ   83 (476)
T ss_dssp             SCCEE-TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTC------CCTTBCCEEE
T ss_pred             CCcee-cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhC------CCCCCCcEEE
Confidence            44443 789999999999999999999999999999999875532    245788999999988      7999999999


Q ss_pred             cccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCC
Q 013220          106 HFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       106 ~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~  184 (447)
                      ++...    ..+++||||+ +++|.+++...  ..+++..++.++.||+.||+|||++ ||+||||||+||++       
T Consensus        84 ~~~~~----~~~~lv~E~~~gg~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~-givHrDLkp~NIll-------  149 (476)
T 2y94_A           84 VISTP----SDIFMVMEYVSGGELFDYICKN--GRLDEKESRRLFQQILSGVDYCHRH-MVVHRDLKPENVLL-------  149 (476)
T ss_dssp             EEECS----SEEEEEEECCSSEEHHHHTTSS--SSCCHHHHHHHHHHHHHHHHHHHTT-TEECSCCSGGGEEE-------
T ss_pred             EEEEC----CEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CCCcccccHHHEEE-------
Confidence            98753    6899999999 88999988643  4599999999999999999999997 99999999999999       


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                       +..+.+||+|||++.
T Consensus       150 -----------------------------------------------------------------~~~~~vkL~DFG~a~  164 (476)
T 2y94_A          150 -----------------------------------------------------------------DAHMNAKIADFGLSN  164 (476)
T ss_dssp             -----------------------------------------------------------------CTTCCEEECCCSSCE
T ss_pred             -----------------------------------------------------------------ecCCCeEEEeccchh
Confidence                                                                             445679999999997


Q ss_pred             cccc--ccccCCCCCCccChHHhhcCCC-CccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          265 RANK--QFAEEIQTRQYRAPEVILRAGY-SFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       265 ~~~~--~~~~~~gt~~y~aPE~l~~~~~-~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                      ....  .....+||+.|+|||++.+..+ +.++|||||||++|+|++|..||...+      .......+          
T Consensus       165 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~------~~~~~~~i----------  228 (476)
T 2y94_A          165 MMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDH------VPTLFKKI----------  228 (476)
T ss_dssp             ECCTTCCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSS------SHHHHHHH----------
T ss_pred             hccccccccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCC------HHHHHHHH----------
Confidence            6543  2345689999999999998766 689999999999999999999997542      11111111          


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                                                      .......+...+..+.+||.+||+.||++|||++|+++||||+..
T Consensus       229 --------------------------------~~~~~~~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~hp~~~~~  273 (476)
T 2y94_A          229 --------------------------------CDGIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIREHEWFKQD  273 (476)
T ss_dssp             --------------------------------HTTCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTCHHHHTT
T ss_pred             --------------------------------hcCCcCCCccCCHHHHHHHHHHcCCCchhCcCHHHHHhCHHhhhc
Confidence                                            111122334456789999999999999999999999999999864

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=6.2e-43  Score=337.93  Aligned_cols=253  Identities=23%  Similarity=0.393  Sum_probs=209.9

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH----hHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ----FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~----~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      .++|++.+.||+|+||+||+|++..++..||+|++.....    ..+.+.+|+++++.+      .|+||+++++++.. 
T Consensus        13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~-   85 (284)
T 2vgo_A           13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHL------RHPNILRMYNYFHD-   85 (284)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTC------CCTTBCCEEEEEEC-
T ss_pred             hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcC------CCCCEeeEEEEEEc-
Confidence            3789999999999999999999999999999998865432    235788999999999      78999999999875 


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                         ....++||||+ +++|.+.+...  ..+++..+..++.|++.||+|||++ ||+||||||+||++            
T Consensus        86 ---~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~Nil~------------  147 (284)
T 2vgo_A           86 ---RKRIYLMLEFAPRGELYKELQKH--GRFDEQRSATFMEELADALHYCHER-KVIHRDIKPENLLM------------  147 (284)
T ss_dssp             ---SSEEEEEECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTT-TEECCCCSGGGEEE------------
T ss_pred             ---CCEEEEEEEeCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CceecCCCHHHEEE------------
Confidence               36899999999 78999888754  3489999999999999999999997 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                  +....++|+|||++......
T Consensus       148 ------------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~  167 (284)
T 2vgo_A          148 ------------------------------------------------------------GYKGELKIADFGWSVHAPSL  167 (284)
T ss_dssp             ------------------------------------------------------------CTTCCEEECCCTTCEECSSS
T ss_pred             ------------------------------------------------------------cCCCCEEEecccccccCccc
Confidence                                                                        33567999999998654432


Q ss_pred             -cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          270 -FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       270 -~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                       .....|++.|+|||.+.+..++.++|||||||++|+|++|..||...+      .......+                 
T Consensus       168 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~------~~~~~~~~-----------------  224 (284)
T 2vgo_A          168 RRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPS------HTETHRRI-----------------  224 (284)
T ss_dssp             CBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSS------HHHHHHHH-----------------
T ss_pred             ccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCC------HhHHHHHH-----------------
Confidence             334578999999999999889999999999999999999999997542      11111111                 


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccC
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~  420 (447)
                                               ......++...+..+.+||.+||+.||.+|||++|+++||||+....
T Consensus       225 -------------------------~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~h~~~~~~~~  271 (284)
T 2vgo_A          225 -------------------------VNVDLKFPPFLSDGSKDLISKLLRYHPPQRLPLKGVMEHPWVKANSR  271 (284)
T ss_dssp             -------------------------HTTCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTCHHHHHHCC
T ss_pred             -------------------------hccccCCCCcCCHHHHHHHHHHhhcCHhhCCCHHHHhhCHHHHhhcc
Confidence                                     11122244455778999999999999999999999999999996543

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=9.9e-43  Score=337.33  Aligned_cols=262  Identities=28%  Similarity=0.406  Sum_probs=204.0

Q ss_pred             ccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecc
Q 013220           28 RVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLID  105 (447)
Q Consensus        28 ~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~  105 (447)
                      .-|++.  ++|.+.++||+|+||+||+|++..++..||+|++....  ...+.+.+|+++++.+      .|+||+++++
T Consensus        16 ~~g~i~--~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~~   87 (285)
T 3is5_A           16 FQGTID--DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSL------DHPNIIKIFE   87 (285)
T ss_dssp             ESSCHH--HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTC------CCTTBCCEEE
T ss_pred             CCCChh--hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhC------CCchHHhHHH
Confidence            345555  68999999999999999999999999999999877654  2346788999999999      7899999999


Q ss_pred             cccccCCCcceEEEEEecc-cccHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCC
Q 013220          106 HFKHAGPNGQHLCMVLEFL-GDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTID  182 (447)
Q Consensus       106 ~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~--~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~  182 (447)
                      ++..    ....++||||+ +++|.+.+...  ....+++..+..++.|++.||+|||++ ||+||||||+||++...  
T Consensus        88 ~~~~----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~-~ivH~dikp~NIl~~~~--  160 (285)
T 3is5_A           88 VFED----YHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQ-HVVHKDLKPENILFQDT--  160 (285)
T ss_dssp             EEEC----SSEEEEEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSGGGEEESSS--
T ss_pred             heec----CCeEEEEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhC-CEEECCCCHHHEEEecC--
Confidence            9874    36899999999 78998877543  235589999999999999999999997 99999999999999431  


Q ss_pred             CCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCc
Q 013220          183 PSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGN  262 (447)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~  262 (447)
                                                                                         +....++|+|||+
T Consensus       161 -------------------------------------------------------------------~~~~~~kl~Dfg~  173 (285)
T 3is5_A          161 -------------------------------------------------------------------SPHSPIKIIDFGL  173 (285)
T ss_dssp             -------------------------------------------------------------------STTCCEEECCCCC
T ss_pred             -------------------------------------------------------------------CCCCCEEEEeeec
Confidence                                                                               2245799999999


Q ss_pred             ccccccc--cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCH
Q 013220          263 ACRANKQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  340 (447)
Q Consensus       263 a~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~  340 (447)
                      +......  .....||+.|+|||.+. ..++.++|||||||++|+|++|..||...+       .......... .....
T Consensus       174 a~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~-------~~~~~~~~~~-~~~~~  244 (285)
T 3is5_A          174 AELFKSDEHSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTS-------LEEVQQKATY-KEPNY  244 (285)
T ss_dssp             CCC----------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSS-------HHHHHHHHHH-CCCCC
T ss_pred             ceecCCcccCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCC-------HHHHHhhhcc-CCccc
Confidence            9754332  33457899999999985 468899999999999999999999997652       1111111110 00000


Q ss_pred             HhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccc
Q 013220          341 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~  417 (447)
                                                           .......++.+.+||.+||+.||++|||++|+|+||||++
T Consensus       245 -------------------------------------~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~f~~  284 (285)
T 3is5_A          245 -------------------------------------AVECRPLTPQAVDLLKQMLTKDPERRPSAAQVLHHEWFKQ  284 (285)
T ss_dssp             -------------------------------------CC--CCCCHHHHHHHHHHTCSCTTTSCCHHHHHTSGGGGC
T ss_pred             -------------------------------------ccccCcCCHHHHHHHHHHccCChhhCcCHHHHhcCHHhhc
Confidence                                                 0001123568889999999999999999999999999985

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=7.7e-43  Score=363.64  Aligned_cols=265  Identities=29%  Similarity=0.434  Sum_probs=211.9

Q ss_pred             ccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeec
Q 013220           28 RVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLI  104 (447)
Q Consensus        28 ~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~  104 (447)
                      .-|.+.  ++|++.++||+|+||+||+|++..+++.||+|++....   .....+.+|+++++.+      .||||++++
T Consensus        16 ~~g~~~--~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l------~hpniv~~~   87 (486)
T 3mwu_A           16 FQGTFA--ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKL------DHPNIMKLF   87 (486)
T ss_dssp             TCCHHH--HHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHC------CCTTBCCEE
T ss_pred             ccCChh--cceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhC------CCCCcCeEE
Confidence            334444  68999999999999999999999999999999986543   2346788999999999      799999999


Q ss_pred             ccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCC
Q 013220          105 DHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP  183 (447)
Q Consensus       105 ~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~  183 (447)
                      +++..    ...+|+||||| +++|.+.+...  ..+++..+..++.||+.||+|||++ ||+||||||+||++...   
T Consensus        88 ~~~~~----~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~qi~~al~~lH~~-~ivH~Dlkp~Nil~~~~---  157 (486)
T 3mwu_A           88 EILED----SSSFYIVGELYTGGELFDEIIKR--KRFSEHDAARIIKQVFSGITYMHKH-NIVHRDLKPENILLESK---  157 (486)
T ss_dssp             EEEEC----SSEEEEEECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEESSS---
T ss_pred             EEEEc----CCEEEEEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEeccCchHHEEEecC---
Confidence            99875    36899999999 88998888654  3599999999999999999999997 99999999999999432   


Q ss_pred             CCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcc
Q 013220          184 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  263 (447)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a  263 (447)
                                                                                        .....+||+|||++
T Consensus       158 ------------------------------------------------------------------~~~~~~kl~Dfg~a  171 (486)
T 3mwu_A          158 ------------------------------------------------------------------EKDCDIKIIDFGLS  171 (486)
T ss_dssp             ------------------------------------------------------------------STTCCEEECSCSCT
T ss_pred             ------------------------------------------------------------------CCCCCEEEEECCcC
Confidence                                                                              23457999999999


Q ss_pred             cccccc--cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          264 CRANKQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       264 ~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                      ......  ....+||+.|+|||++.+ .++.++|||||||++|+|++|..||.+.+      ....+..+.......+. 
T Consensus       172 ~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~------~~~~~~~i~~~~~~~~~-  243 (486)
T 3mwu_A          172 TCFQQNTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKN------EYDILKRVETGKYAFDL-  243 (486)
T ss_dssp             TTBCCC----CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHTCCCSCS-
T ss_pred             eECCCCCccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHhCCCCCCC-
Confidence            754432  344579999999999876 58999999999999999999999997652      22222222211000000 


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                                                           +....+++.+.+||.+||+.||.+|||+.|+|+||||+.....
T Consensus       244 -------------------------------------~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~hp~~~~~~~~  286 (486)
T 3mwu_A          244 -------------------------------------PQWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPWIQKYSSE  286 (486)
T ss_dssp             -------------------------------------GGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHCHHHHHTCCC
T ss_pred             -------------------------------------cccCCCCHHHHHHHHHHcCCChhhCcCHHHHhcCHhhccCccc
Confidence                                                 0112346789999999999999999999999999999876543

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=6.4e-43  Score=356.89  Aligned_cols=257  Identities=24%  Similarity=0.349  Sum_probs=206.7

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      .++|++.+.||+|+||.||+|++..+++.||+|+++...    .....+.+|.+++..+      +|++|++++.+|...
T Consensus        60 ~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~------~hp~Iv~l~~~~~~~  133 (412)
T 2vd5_A           60 RDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNG------DRRWITQLHFAFQDE  133 (412)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHS------CTTTBCCEEEEEECS
T ss_pred             hhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhc------CCCCeeeEEEEEeeC
Confidence            478999999999999999999999999999999987543    2234578899999888      789999999998853


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                          ..+|+||||+ +++|.+++.... ..+++..++.++.||+.||+|||++ ||+||||||+|||+            
T Consensus       134 ----~~~~lVmE~~~gg~L~~~l~~~~-~~l~~~~~~~~~~qi~~aL~~LH~~-giiHrDLKp~NILl------------  195 (412)
T 2vd5_A          134 ----NYLYLVMEYYVGGDLLTLLSKFG-ERIPAEMARFYLAEIVMAIDSVHRL-GYVHRDIKPDNILL------------  195 (412)
T ss_dssp             ----SEEEEEECCCCSCBHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEE------------
T ss_pred             ----CEEEEEEcCCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CeeecccCHHHeee------------
Confidence                6899999999 899999886542 3589999999999999999999996 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                  +..+.+||+|||++......
T Consensus       196 ------------------------------------------------------------d~~g~vkL~DFGla~~~~~~  215 (412)
T 2vd5_A          196 ------------------------------------------------------------DRCGHIRLADFGSCLKLRAD  215 (412)
T ss_dssp             ------------------------------------------------------------CTTSCEEECCCTTCEECCTT
T ss_pred             ------------------------------------------------------------cCCCCEEEeechhheeccCC
Confidence                                                                        44678999999999765432


Q ss_pred             ----cccCCCCCCccChHHhhc-------CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCC
Q 013220          270 ----FAEEIQTRQYRAPEVILR-------AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKM  338 (447)
Q Consensus       270 ----~~~~~gt~~y~aPE~l~~-------~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~  338 (447)
                          ....+||+.|+|||++..       ..++.++|+|||||++|+|++|+.||...+      .......+.......
T Consensus       216 ~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~------~~~~~~~i~~~~~~~  289 (412)
T 2vd5_A          216 GTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADS------TAETYGKIVHYKEHL  289 (412)
T ss_dssp             SCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSS------HHHHHHHHHTHHHHC
T ss_pred             CccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCC------HHHHHHHHHhcccCc
Confidence                123589999999999973       468999999999999999999999997652      222222222100000


Q ss_pred             CHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCC---CChHHHhcCccc
Q 013220          339 PRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKR---PTAQQCLQHPWL  415 (447)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kR---pta~elL~hp~f  415 (447)
                                                           ..+..+..++.++.+||.+||+ +|++|   |+++|+++||||
T Consensus       290 -------------------------------------~~p~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~Hpff  331 (412)
T 2vd5_A          290 -------------------------------------SLPLVDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRTHPFF  331 (412)
T ss_dssp             -------------------------------------CCC----CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHTSGGG
T ss_pred             -------------------------------------CCCccccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhcCCCc
Confidence                                                 0001123457789999999999 99998   599999999999


Q ss_pred             cccc
Q 013220          416 SLRN  419 (447)
Q Consensus       416 ~~~~  419 (447)
                      +..+
T Consensus       332 ~~i~  335 (412)
T 2vd5_A          332 FGLD  335 (412)
T ss_dssp             TTCC
T ss_pred             CCCC
Confidence            8753

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=1.1e-42  Score=347.90  Aligned_cols=289  Identities=25%  Similarity=0.412  Sum_probs=216.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh------------HHhHHHHHHHHHHHHHhhcCCCCCcceeeee
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA------------AQFAQAALHEIEVLSAVADGDPSNEKCVIRL  103 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~------------~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~  103 (447)
                      ++|++.+.||+|+||+||+|.+.. +..||||++...            ....+.+.+|+++++.+      .|+||+++
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~   94 (362)
T 3pg1_A           22 SPYTVQRFISSGSYGAVCAGVDSE-GIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHF------HHPNILGL   94 (362)
T ss_dssp             CSCEEEEEEEEETTEEEEEEECTT-SCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHC------CCTTBCCC
T ss_pred             cceEEeEEeccCCCEEEEEEECCC-CCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhC------CCcCccce
Confidence            789999999999999999999865 899999987532            12236789999999999      79999999


Q ss_pred             cccccccC-CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCC
Q 013220          104 IDHFKHAG-PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTID  182 (447)
Q Consensus       104 ~~~~~~~~-~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~  182 (447)
                      ++++.... +....+|+||||+++++.+.+.... ..+++..+..++.||+.||+|||++ ||+||||||+||++     
T Consensus        95 ~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~Dlkp~NIl~-----  167 (362)
T 3pg1_A           95 RDIFVHFEEPAMHKLYLVTELMRTDLAQVIHDQR-IVISPQHIQYFMYHILLGLHVLHEA-GVVHRDLHPGNILL-----  167 (362)
T ss_dssp             SEEEEECCTTTCCEEEEEEECCSEEHHHHHHCTT-SCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEE-----
T ss_pred             eeeEEeccCCCcceEEEEEccCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHC-cCEecCCChHHEEE-----
Confidence            99986543 2445899999999888888876432 4589999999999999999999997 99999999999999     


Q ss_pred             CCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCc
Q 013220          183 PSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGN  262 (447)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~  262 (447)
                                                                                         +....++|+|||.
T Consensus       168 -------------------------------------------------------------------~~~~~~kl~Dfg~  180 (362)
T 3pg1_A          168 -------------------------------------------------------------------ADNNDITICDFNL  180 (362)
T ss_dssp             -------------------------------------------------------------------CTTCCEEECCTTC
T ss_pred             -------------------------------------------------------------------cCCCCEEEEecCc
Confidence                                                                               3456799999999


Q ss_pred             cccccc--ccccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCC
Q 013220          263 ACRANK--QFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMP  339 (447)
Q Consensus       263 a~~~~~--~~~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~  339 (447)
                      +.....  ......+|+.|+|||++.+ ..++.++|||||||++|+|++|..||...      .....+..+.+..+..+
T Consensus       181 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~------~~~~~~~~i~~~~~~~~  254 (362)
T 3pg1_A          181 AREDTADANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGS------TFYNQLNKIVEVVGTPK  254 (362)
T ss_dssp             ---------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCCCC
T ss_pred             ccccccccccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHcCCCC
Confidence            974432  2334578999999999987 56899999999999999999999999876      46778888888888877


Q ss_pred             HHhhhCCCCc--cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccc
Q 013220          340 RKIAIGGAQS--KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       340 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~  417 (447)
                      ..........  ..++...     ........+.       ......++.+.+||.+||+.||++|||++|+|+||||+.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-------~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~  322 (362)
T 3pg1_A          255 IEDVVMFSSPSARDYLRNS-----LSNVPARAWT-------AVVPTADPVALDLIAKMLEFNPQRRISTEQALRHPYFES  322 (362)
T ss_dssp             HHHHHHTSCHHHHHHTTTC-----CCCCCCCCHH-------HHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGTT
T ss_pred             hHHhhhccchhhhHHHHhh-----cccCChhhHH-------hhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHcCchhhh
Confidence            5432111100  0000000     0000000000       012334668999999999999999999999999999998


Q ss_pred             ccCCcc
Q 013220          418 RNSTRD  423 (447)
Q Consensus       418 ~~~~~~  423 (447)
                      ......
T Consensus       323 ~~~~~~  328 (362)
T 3pg1_A          323 LFDPLD  328 (362)
T ss_dssp             TCCGGG
T ss_pred             ccCccc
Confidence            754433

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=8e-43  Score=351.78  Aligned_cols=258  Identities=29%  Similarity=0.398  Sum_probs=203.2

Q ss_pred             CceEE--EEeecccCceEEEEEEeCCCCeEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIA--QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l--~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      +.|.+  .+.||+|+||.||+|++..++..||+|+++... ...+.+.+|+++++.+      .|+||+++++++...  
T Consensus        87 ~~~~~~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l------~hpnIv~~~~~~~~~--  158 (373)
T 2x4f_A           87 SFYTVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQL------DHANLIQLYDAFESK--  158 (373)
T ss_dssp             GTEEEEEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTC------CCTTBCCEEEEEECS--
T ss_pred             cceeeecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhC------CCCCCCeEEEEEEEC--
Confidence            45655  678999999999999999999999999887543 3456788999999999      789999999998753  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                        ...++||||+ +++|.+.+.... ..+++..+..++.||+.||+|||++ ||+||||||+||++..            
T Consensus       159 --~~~~lv~E~~~~~~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dlkp~NIll~~------------  222 (373)
T 2x4f_A          159 --NDIVLVMEYVDGGELFDRIIDES-YNLTELDTILFMKQICEGIRHMHQM-YILHLDLKPENILCVN------------  222 (373)
T ss_dssp             --SEEEEEEECCTTCEEHHHHHHTG-GGCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEEEE------------
T ss_pred             --CEEEEEEeCCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CcccccCCHHHEEEec------------
Confidence              6899999999 788888775432 3489999999999999999999996 9999999999999954            


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                +....+||+|||++......  
T Consensus       223 ----------------------------------------------------------~~~~~~kl~DFG~a~~~~~~~~  244 (373)
T 2x4f_A          223 ----------------------------------------------------------RDAKQIKIIDFGLARRYKPREK  244 (373)
T ss_dssp             ----------------------------------------------------------TTTTEEEECCCSSCEECCTTCB
T ss_pred             ----------------------------------------------------------CCCCcEEEEeCCCceecCCccc
Confidence                                                                      23467999999999765432  


Q ss_pred             cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          270 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      ....+||+.|+|||++.+..++.++|||||||++|+|++|..||...+      ....+..+.......+..        
T Consensus       245 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~------~~~~~~~i~~~~~~~~~~--------  310 (373)
T 2x4f_A          245 LKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDN------DAETLNNILACRWDLEDE--------  310 (373)
T ss_dssp             CCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSS------HHHHHHHHHHTCCCSCSG--------
T ss_pred             cccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHhccCCCChh--------
Confidence            334579999999999988889999999999999999999999997652      333333332211111100        


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                    ....+++++.+||.+||+.||.+|||++|+|+||||++..
T Consensus       311 ------------------------------~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~hp~~~~~~  350 (373)
T 2x4f_A          311 ------------------------------EFQDISEEAKEFISKLLIKEKSWRISASEALKHPWLSDHK  350 (373)
T ss_dssp             ------------------------------GGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHCHH
T ss_pred             ------------------------------hhccCCHHHHHHHHHHcCCChhhCCCHHHHhcCcCcCCCc
Confidence                                          0123466899999999999999999999999999999764

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=8.4e-43  Score=376.93  Aligned_cols=253  Identities=23%  Similarity=0.339  Sum_probs=212.9

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      .++|++.+.||+|+||.||+|++..+++.||||+++...    ...+.+..|.+++..+.     +|++|++++.+|.. 
T Consensus       340 ~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~-----~~~~i~~l~~~~~~-  413 (674)
T 3pfq_A          340 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPG-----KPPFLTQLHSCFQT-  413 (674)
T ss_dssp             CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTT-----CCTTBCCEEEECBC-
T ss_pred             ccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhcc-----CCCeEEEEEEEEEe-
Confidence            468999999999999999999999999999999987643    23456777888887764     78999999999875 


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                         ...+|+||||+ +++|..++...  ..+++..++.++.||+.||+|||++ ||+||||||+|||+            
T Consensus       414 ---~~~~~lV~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-gIiHrDLKp~NILl------------  475 (674)
T 3pfq_A          414 ---MDRLYFVMEYVNGGDLMYHIQQV--GRFKEPHAVFYAAEIAIGLFFLQSK-GIIYRDLKLDNVML------------  475 (674)
T ss_dssp             ---SSEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-SEECCCCCSTTEEE------------
T ss_pred             ---CCEEEEEEeCcCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeEeccCChhhEEE------------
Confidence               36899999999 88999988754  3599999999999999999999997 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc--
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--  267 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~--  267 (447)
                                                                                  +.++.+||+|||++....  
T Consensus       476 ------------------------------------------------------------~~~g~ikL~DFGla~~~~~~  495 (674)
T 3pfq_A          476 ------------------------------------------------------------DSEGHIKIADFGMCKENIWD  495 (674)
T ss_dssp             ------------------------------------------------------------CSSSCEEECCCTTCEECCCT
T ss_pred             ------------------------------------------------------------cCCCcEEEeecceeeccccC
Confidence                                                                        446789999999997532  


Q ss_pred             -cccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCC
Q 013220          268 -KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  346 (447)
Q Consensus       268 -~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  346 (447)
                       ......+||+.|+|||++.+..|+.++|||||||++|+|++|..||.+.+      .....                  
T Consensus       496 ~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~------~~~~~------------------  551 (674)
T 3pfq_A          496 GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGED------EDELF------------------  551 (674)
T ss_dssp             TCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHH------------------
T ss_pred             CcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCC------HHHHH------------------
Confidence             23345689999999999999999999999999999999999999997652      22121                  


Q ss_pred             CCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCCh-----HHHhcCccccccc
Q 013220          347 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA-----QQCLQHPWLSLRN  419 (447)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta-----~elL~hp~f~~~~  419 (447)
                                              ..++.....++..++.++.+||.+||+.||++||++     +|+++||||+..+
T Consensus       552 ------------------------~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~h~ff~~i~  605 (674)
T 3pfq_A          552 ------------------------QSIMEHNVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYID  605 (674)
T ss_dssp             ------------------------HHHHSSCCCCCTTSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHSSGGGSSCC
T ss_pred             ------------------------HHHHhCCCCCCccCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhcCccccCCC
Confidence                                    222223334566678899999999999999999998     9999999999754

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=6e-43  Score=369.40  Aligned_cols=260  Identities=27%  Similarity=0.375  Sum_probs=214.7

Q ss_pred             ccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           33 FNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        33 ~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      +..++|++.+.||+|+||.||+|++..+++.||+|++....    .....+.+|+++++.+      +|+||+++++++.
T Consensus       181 ~~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l------~hp~Iv~l~~~~~  254 (576)
T 2acx_A          181 VTKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKV------NSRFVVSLAYAYE  254 (576)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHC------CCTTBCCEEEEEE
T ss_pred             ccccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHc------CCCCEeeEEEEEe
Confidence            33478999999999999999999999999999999987543    2245678899999999      7899999999987


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCc
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                      .    ...+|+||||+ |++|..++.......+++..++.++.||+.||+|||++ ||+||||||+|||+          
T Consensus       255 ~----~~~l~lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~-gIvHrDLKPeNILl----------  319 (576)
T 2acx_A          255 T----KDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRE-RIVYRDLKPENILL----------  319 (576)
T ss_dssp             C----SSEEEEEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEE----------
T ss_pred             e----CCEEEEEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC-CEeccCCchheEEE----------
Confidence            5    36899999999 89999988765445599999999999999999999997 99999999999999          


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                    +..+.+||+|||++....
T Consensus       320 --------------------------------------------------------------d~~g~vKL~DFGla~~~~  337 (576)
T 2acx_A          320 --------------------------------------------------------------DDHGHIRISDLGLAVHVP  337 (576)
T ss_dssp             --------------------------------------------------------------CTTSCEEECCCTTCEECC
T ss_pred             --------------------------------------------------------------eCCCCeEEEecccceecc
Confidence                                                                          446789999999997654


Q ss_pred             c--ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          268 K--QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       268 ~--~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                      .  .....+||+.|+|||++.+..++.++|+|||||++|+|++|..||.......   ..   ..+.+.           
T Consensus       338 ~~~~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~---~~---~~i~~~-----------  400 (576)
T 2acx_A          338 EGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKI---KR---EEVERL-----------  400 (576)
T ss_dssp             TTCCEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCC---CH---HHHHHH-----------
T ss_pred             cCccccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccch---hH---HHHHHH-----------
Confidence            3  2345689999999999998889999999999999999999999997653211   11   111111           


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC-----ChHHHhcCccccccc
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRN  419 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp-----ta~elL~hp~f~~~~  419 (447)
                                                 +......++...+.++.+||.+||+.||++||     +++|+++||||+..+
T Consensus       401 ---------------------------i~~~~~~~p~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~HpfF~~i~  452 (576)
T 2acx_A          401 ---------------------------VKEVPEEYSERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEHPLFKKLN  452 (576)
T ss_dssp             ---------------------------HHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHTSGGGTTCC
T ss_pred             ---------------------------hhcccccCCccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHhChhhccCC
Confidence                                       11112234455677999999999999999999     899999999999754

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=1.5e-42  Score=335.50  Aligned_cols=260  Identities=22%  Similarity=0.343  Sum_probs=190.3

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHh--HH-HHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQF--AQ-AALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~--~~-~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      .++|++.++||+|+||+||+|++..+++.||+|+++.....  .. .+..+...++.+      .|+||+++++++... 
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~iv~~~~~~~~~-   78 (290)
T 3fme_A            6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTV------DCPFTVTFYGALFRE-   78 (290)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTC------CCTTBCCEEEEEECS-
T ss_pred             HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhC------CCCeEEEEeeeeecc-
Confidence            47999999999999999999999999999999988754321  22 222333334444      899999999998853 


Q ss_pred             CCcceEEEEEecccccHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          112 PNGQHLCMVLEFLGDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       112 ~~~~~~~lvmE~~~~~L~~~~~~~--~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                         ...++||||++++|.+++...  ....+++..+..++.|++.||+|||++.||+||||||+||++            
T Consensus        79 ---~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dlkp~Nil~------------  143 (290)
T 3fme_A           79 ---GDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLI------------  143 (290)
T ss_dssp             ---SSEEEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSCCCCCCCSGGGCEE------------
T ss_pred             ---CCEEEEEehhccchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEE------------
Confidence               679999999977887776542  234689999999999999999999994499999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                  +....++|+|||.+......
T Consensus       144 ------------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~  163 (290)
T 3fme_A          144 ------------------------------------------------------------NALGQVKMCDFGISGYLVDD  163 (290)
T ss_dssp             ------------------------------------------------------------CTTCCEEBCCC---------
T ss_pred             ------------------------------------------------------------CCCCCEEEeecCCccccccc
Confidence                                                                        34567999999999755433


Q ss_pred             c--ccCCCCCCccChHHh----hcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhh
Q 013220          270 F--AEEIQTRQYRAPEVI----LRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  343 (447)
Q Consensus       270 ~--~~~~gt~~y~aPE~l----~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  343 (447)
                      .  ....||+.|+|||.+    .+..++.++|||||||++|+|++|..||....     .....+.....  ...+.   
T Consensus       164 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~-----~~~~~~~~~~~--~~~~~---  233 (290)
T 3fme_A          164 VAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWG-----TPFQQLKQVVE--EPSPQ---  233 (290)
T ss_dssp             ------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCS-----CHHHHHHHHHH--SCCCC---
T ss_pred             ccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccC-----chHHHHHHHhc--cCCCC---
Confidence            2  234789999999997    45568999999999999999999999996532     12222221111  00000   


Q ss_pred             hCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          344 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                                                         ......+..+.+||.+||+.||++|||++|+|+||||+...+.
T Consensus       234 -----------------------------------~~~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~hp~f~~~~~~  276 (290)
T 3fme_A          234 -----------------------------------LPADKFSAEFVDFTSQCLKKNSKERPTYPELMQHPFFTLHESK  276 (290)
T ss_dssp             -----------------------------------CCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHHHHS
T ss_pred             -----------------------------------cccccCCHHHHHHHHHHhhcChhhCcCHHHHHhCcccccCccc
Confidence                                               0112346689999999999999999999999999999975433

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.9e-43  Score=349.70  Aligned_cols=251  Identities=26%  Similarity=0.428  Sum_probs=207.3

Q ss_pred             ccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH---------hHHHHHHHHHHHHHhhcCCCCCcc
Q 013220           28 RVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ---------FAQAALHEIEVLSAVADGDPSNEK   98 (447)
Q Consensus        28 ~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~---------~~~~~~~E~~~l~~l~~~~~~~~~   98 (447)
                      ..|++.  ++|++.+.||+|+||+||+|++..+++.||+|+++....         ....+.+|+++++.+      .|+
T Consensus        18 ~~~~~~--~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~   89 (335)
T 3dls_A           18 CEGEYS--QKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRV------EHA   89 (335)
T ss_dssp             HTTHHH--HHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTC------CCT
T ss_pred             CCcccc--cceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhC------CCC
Confidence            335544  689999999999999999999999999999998875431         234677899999999      789


Q ss_pred             eeeeecccccccCCCcceEEEEEecc-cc-cHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeE
Q 013220           99 CVIRLIDHFKHAGPNGQHLCMVLEFL-GD-SLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL  176 (447)
Q Consensus        99 ~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~-~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nil  176 (447)
                      ||+++++++..    ....++||||+ ++ +|.+++...  ..+++..+..++.||+.||+|||++ ||+||||||+||+
T Consensus        90 ~Iv~~~~~~~~----~~~~~lv~e~~~~g~~l~~~~~~~--~~l~~~~~~~i~~qi~~~L~~LH~~-~ivH~Dlkp~NIl  162 (335)
T 3dls_A           90 NIIKVLDIFEN----QGFFQLVMEKHGSGLDLFAFIDRH--PRLDEPLASYIFRQLVSAVGYLRLK-DIIHRDIKDENIV  162 (335)
T ss_dssp             TBCCEEEEEEC----SSEEEEEEECCTTSCBHHHHHHTC--CCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEE
T ss_pred             CEeeEEEEEee----CCEEEEEEEeCCCCccHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeEEeccCHHHEE
Confidence            99999999875    36899999998 44 888888654  3599999999999999999999997 9999999999999


Q ss_pred             eeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCccccee
Q 013220          177 LVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCK  256 (447)
Q Consensus       177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  256 (447)
                      +                                                                        +.++.+|
T Consensus       163 l------------------------------------------------------------------------~~~~~~k  170 (335)
T 3dls_A          163 I------------------------------------------------------------------------AEDFTIK  170 (335)
T ss_dssp             E------------------------------------------------------------------------CTTSCEE
T ss_pred             E------------------------------------------------------------------------cCCCcEE
Confidence            9                                                                        3457799


Q ss_pred             EeecCcccccccc--cccCCCCCCccChHHhhcCCC-CccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHH
Q 013220          257 VVDFGNACRANKQ--FAEEIQTRQYRAPEVILRAGY-SFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMME  333 (447)
Q Consensus       257 L~Dfg~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~-~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~  333 (447)
                      |+|||++......  ....+||+.|+|||++.+..+ +.++|||||||++|+|++|..||.....               
T Consensus       171 L~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~---------------  235 (335)
T 3dls_A          171 LIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEE---------------  235 (335)
T ss_dssp             ECCCTTCEECCTTCCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGG---------------
T ss_pred             EeecccceECCCCCceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHH---------------
Confidence            9999999765433  234578999999999998876 7899999999999999999999964310               


Q ss_pred             HhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCc
Q 013220          334 LIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP  413 (447)
Q Consensus       334 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp  413 (447)
                                                             ........+...++++.+||.+||+.||++|||++|+|+||
T Consensus       236 ---------------------------------------~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~ell~hp  276 (335)
T 3dls_A          236 ---------------------------------------TVEAAIHPPYLVSKELMSLVSGLLQPVPERRTTLEKLVTDP  276 (335)
T ss_dssp             ---------------------------------------GTTTCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHHCT
T ss_pred             ---------------------------------------HHhhccCCCcccCHHHHHHHHHHccCChhhCcCHHHHhcCc
Confidence                                                   00011112233467899999999999999999999999999


Q ss_pred             cccccc
Q 013220          414 WLSLRN  419 (447)
Q Consensus       414 ~f~~~~  419 (447)
                      ||+...
T Consensus       277 ~~~~~~  282 (335)
T 3dls_A          277 WVTQPV  282 (335)
T ss_dssp             TTTCCC
T ss_pred             cccCCc
Confidence            998643

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=5.5e-43  Score=347.43  Aligned_cols=260  Identities=25%  Similarity=0.395  Sum_probs=204.0

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH------HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA------QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~------~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      ++|++.+.||+|+||+||+|++..+++.||+|++....      ...+.+.+|+++++.+      +|+||+++++++..
T Consensus        26 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l------~hpniv~~~~~~~~   99 (345)
T 3hko_A           26 KKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKL------HHPNIARLYEVYED   99 (345)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHC------CCTTBCCEEEEEEC
T ss_pred             hheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhC------CCCCcceeehhhcc
Confidence            78999999999999999999999999999999886542      3346788999999999      78999999999875


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhc--------------------------------------cCCCCHHHHHHHHH
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSR--------------------------------------YKGLELNKVREICK  150 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~--------------------------------------~~~l~~~~~~~i~~  150 (447)
                          ....++||||| +++|.+.+....                                      ...+++..+..++.
T Consensus       100 ----~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  175 (345)
T 3hko_A          100 ----EQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMR  175 (345)
T ss_dssp             ----SSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHH
T ss_pred             ----CCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHH
Confidence                46899999999 889988774210                                      01135677889999


Q ss_pred             HHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhh
Q 013220          151 YILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANIS  230 (447)
Q Consensus       151 qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (447)
                      ||+.||+|||++ ||+||||||+||++..                                                   
T Consensus       176 qi~~~l~~LH~~-~ivH~Dlkp~NIll~~---------------------------------------------------  203 (345)
T 3hko_A          176 QIFSALHYLHNQ-GICHRDIKPENFLFST---------------------------------------------------  203 (345)
T ss_dssp             HHHHHHHHHHHT-TEECCCCCGGGEEESC---------------------------------------------------
T ss_pred             HHHHHHHHHHHC-CccccCCChhhEEEec---------------------------------------------------
Confidence            999999999997 9999999999999943                                                   


Q ss_pred             hhhcccCCCCCCCCCccCCCcccceeEeecCccccccc-------ccccCCCCCCccChHHhhc--CCCCccchhHhHHH
Q 013220          231 IRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-------QFAEEIQTRQYRAPEVILR--AGYSFSVDMWSFAC  301 (447)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~-------~~~~~~gt~~y~aPE~l~~--~~~~~~~DiwSlGv  301 (447)
                                         +....++|+|||.+.....       ......||+.|+|||.+.+  ..++.++|||||||
T Consensus       204 -------------------~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~  264 (345)
T 3hko_A          204 -------------------NKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGV  264 (345)
T ss_dssp             -------------------SSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHH
T ss_pred             -------------------CCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHHHHHHH
Confidence                               2234799999999975432       1234578999999999975  57899999999999


Q ss_pred             HHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCC
Q 013220          302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFS  381 (447)
Q Consensus       302 il~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (447)
                      ++|+|++|..||...+      .......+.......+.                                      ...
T Consensus       265 il~el~~g~~pf~~~~------~~~~~~~~~~~~~~~~~--------------------------------------~~~  300 (345)
T 3hko_A          265 LLHLLLMGAVPFPGVN------DADTISQVLNKKLCFEN--------------------------------------PNY  300 (345)
T ss_dssp             HHHHHHHSSCSSCCSS------HHHHHHHHHHCCCCTTS--------------------------------------GGG
T ss_pred             HHHHHHHCCCCCCCCC------hHHHHHHHHhcccccCC--------------------------------------ccc
Confidence            9999999999997652      22222222211000000                                      001


Q ss_pred             hhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccC
Q 013220          382 ETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       382 ~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~  420 (447)
                      ...+..+.+||.+||+.||.+|||+.|+|+||||+....
T Consensus       301 ~~~~~~~~~li~~~l~~~p~~Rps~~~~l~hp~~~~~~~  339 (345)
T 3hko_A          301 NVLSPLARDLLSNLLNRNVDERFDAMRALQHPWISQFSD  339 (345)
T ss_dssp             GGSCHHHHHHHHHHSCSCTTTSCCHHHHHHSHHHHTTSS
T ss_pred             ccCCHHHHHHHHHHcCCChhHCCCHHHHhcChhhccChH
Confidence            224668999999999999999999999999999997653

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=5.9e-43  Score=364.15  Aligned_cols=263  Identities=26%  Similarity=0.424  Sum_probs=211.9

Q ss_pred             cCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeec
Q 013220           29 VGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLI  104 (447)
Q Consensus        29 ~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~  104 (447)
                      .+..+. ++|++.+.||+|+||+||+|++..+++.||+|++....    .....+.+|+++++.+      +||||++++
T Consensus        20 ~~~~~~-~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l------~hpniv~~~   92 (484)
T 3nyv_A           20 STAIFS-DRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQL------DHPNIMKLY   92 (484)
T ss_dssp             CCCCHH-HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTC------CCTTBCCEE
T ss_pred             CCCccc-CceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhC------CCCCCCcEE
Confidence            344554 78999999999999999999999999999999876432    3356788999999999      799999999


Q ss_pred             ccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCC
Q 013220          105 DHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP  183 (447)
Q Consensus       105 ~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~  183 (447)
                      +++...    ...++||||| +++|.+.+...  ..+++..+..++.||+.||+|||++ ||+||||||+||++...   
T Consensus        93 ~~~~~~----~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~-~ivH~Dlkp~Nil~~~~---  162 (484)
T 3nyv_A           93 EFFEDK----GYFYLVGEVYTGGELFDEIISR--KRFSEVDAARIIRQVLSGITYMHKN-KIVHRDLKPENLLLESK---  162 (484)
T ss_dssp             EEEECS----SEEEEEECCCCSCBHHHHHHTC--SCCBHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEESSS---
T ss_pred             EEEEeC----CEEEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeeCCCCHHHEEEecC---
Confidence            998753    6899999999 88999888654  4589999999999999999999997 99999999999999431   


Q ss_pred             CCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcc
Q 013220          184 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  263 (447)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a  263 (447)
                                                                                        .....+||+|||++
T Consensus       163 ------------------------------------------------------------------~~~~~~kl~Dfg~a  176 (484)
T 3nyv_A          163 ------------------------------------------------------------------SKDANIRIIDFGLS  176 (484)
T ss_dssp             ------------------------------------------------------------------STTCCEEECCTTHH
T ss_pred             ------------------------------------------------------------------CCCCcEEEEeeeee
Confidence                                                                              23567999999999


Q ss_pred             cccccc--cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          264 CRANKQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       264 ~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                      ......  ....+||+.|+|||++.+ .++.++|||||||++|+|++|..||...+      ....+..+.......+. 
T Consensus       177 ~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~------~~~~~~~i~~~~~~~~~-  248 (484)
T 3nyv_A          177 THFEASKKMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGAN------EYDILKKVEKGKYTFEL-  248 (484)
T ss_dssp             HHBCCCCSHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHCCCCCCS-
T ss_pred             EEcccccccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCC------HHHHHHHHHcCCCCCCC-
Confidence            765433  234579999999999976 68999999999999999999999997652      22222222211000000 


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                           +....+++.+.+||.+||+.||.+|||++|+|+||||+...
T Consensus       249 -------------------------------------~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h~~~~~~~  289 (484)
T 3nyv_A          249 -------------------------------------PQWKKVSESAKDLIRKMLTYVPSMRISARDALDHEWIQTYT  289 (484)
T ss_dssp             -------------------------------------GGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTSHHHHHHT
T ss_pred             -------------------------------------cccccCCHHHHHHHHHHCCCChhHCcCHHHHhhChhhcccc
Confidence                                                 01123467899999999999999999999999999998654

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=9.8e-43  Score=341.58  Aligned_cols=268  Identities=25%  Similarity=0.354  Sum_probs=207.6

Q ss_pred             ccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccc
Q 013220           31 DLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDH  106 (447)
Q Consensus        31 ~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~  106 (447)
                      ..+. ++|++.+.||+|+||+||+|++..+++.||+|+++...    .....+.+|+++++.+      +|+||++++++
T Consensus         8 ~~~~-~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~~~   80 (311)
T 3ork_A            8 SHLS-DRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAAL------NHPAIVAVYDT   80 (311)
T ss_dssp             SEET-TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCC------CCTTBCCEEEE
T ss_pred             ceec-CcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcC------CCCCcceEEEe
Confidence            3443 79999999999999999999999999999999987542    3344677788877777      89999999999


Q ss_pred             ccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCC
Q 013220          107 FKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK  185 (447)
Q Consensus       107 ~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~  185 (447)
                      +......+...|+||||+ +++|.+++...  ..+++..+..++.|++.||+|||++ ||+||||||+||+++       
T Consensus        81 ~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~dlkp~Nil~~-------  150 (311)
T 3ork_A           81 GEAETPAGPLPYIVMEYVDGVTLRDIVHTE--GPMTPKRAIEVIADACQALNFSHQN-GIIHRDVKPANIMIS-------  150 (311)
T ss_dssp             EEEEETTEEEEEEEEECCCEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEEE-------
T ss_pred             eeccCCCCcccEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CCCcCCCCHHHEEEc-------
Confidence            887655556789999999 88999988754  3589999999999999999999997 999999999999993       


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccc
Q 013220          186 DPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR  265 (447)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~  265 (447)
                                                                                       ....+||+|||++..
T Consensus       151 -----------------------------------------------------------------~~~~~kl~Dfg~a~~  165 (311)
T 3ork_A          151 -----------------------------------------------------------------ATNAVKVMDFGIARA  165 (311)
T ss_dssp             -----------------------------------------------------------------TTSCEEECCCSCC--
T ss_pred             -----------------------------------------------------------------CCCCEEEeeccCccc
Confidence                                                                             356799999999975


Q ss_pred             cccc------cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCC
Q 013220          266 ANKQ------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMP  339 (447)
Q Consensus       266 ~~~~------~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~  339 (447)
                      ....      ....+||+.|+|||.+.+..++.++|||||||++|+|++|..||...+      .......... ....+
T Consensus       166 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~------~~~~~~~~~~-~~~~~  238 (311)
T 3ork_A          166 IADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDS------PVSVAYQHVR-EDPIP  238 (311)
T ss_dssp             ----------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHH-CCCCC
T ss_pred             ccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHhc-CCCCC
Confidence            4322      223468999999999999999999999999999999999999997542      1111111111 01111


Q ss_pred             HHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          340 RKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                      ...                                     .....+..+.+||.+||+.||++||++.++|.|+|++...
T Consensus       239 ~~~-------------------------------------~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~  281 (311)
T 3ork_A          239 PSA-------------------------------------RHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHN  281 (311)
T ss_dssp             HHH-------------------------------------HSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHT
T ss_pred             ccc-------------------------------------ccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHHhc
Confidence            000                                     1123466899999999999999999999999999999765


Q ss_pred             CCccc
Q 013220          420 STRDE  424 (447)
Q Consensus       420 ~~~~~  424 (447)
                      .....
T Consensus       282 ~~~~~  286 (311)
T 3ork_A          282 GEPPE  286 (311)
T ss_dssp             TCCCS
T ss_pred             CCCCC
Confidence            44433

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=1.5e-42  Score=340.16  Aligned_cols=264  Identities=26%  Similarity=0.406  Sum_probs=201.1

Q ss_pred             CceEEE-EeecccCceEEEEEEeCCCCeEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           36 GRYIAQ-RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        36 ~~y~l~-~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      ++|++. +.||+|+||+||+|++..+++.||||++.... .....+.+|++++..+.     +|+||+++++++...   
T Consensus        12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~-----~h~~i~~~~~~~~~~---   83 (316)
T 2ac3_A           12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQ-----GHRNVLELIEFFEEE---   83 (316)
T ss_dssp             TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTC-----CCTTBCCEEEEEEET---
T ss_pred             eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhc-----CCCCeeeEEEEEeeC---
Confidence            689996 67999999999999999999999999886543 23567889999998863     799999999998753   


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                       ...++||||+ +++|.+.+...  ..+++..+..++.|++.||+|||++ ||+||||||+||++...            
T Consensus        84 -~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH~~-~ivH~dlkp~Nil~~~~------------  147 (316)
T 2ac3_A           84 -DRFYLVFEKMRGGSILSHIHKR--RHFNELEASVVVQDVASALDFLHNK-GIAHRDLKPENILCEHP------------  147 (316)
T ss_dssp             -TEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEESCS------------
T ss_pred             -CEEEEEEEcCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHhC-CceeCCCCHHHEEEccC------------
Confidence             6899999999 78999988754  3589999999999999999999997 99999999999999431            


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc----
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----  268 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~----  268 (447)
                                                                               .....+||+|||++.....    
T Consensus       148 ---------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~  170 (316)
T 2ac3_A          148 ---------------------------------------------------------NQVSPVKICDFDLGSGIKLNGDC  170 (316)
T ss_dssp             ---------------------------------------------------------SSSCSEEECCTTCCC--------
T ss_pred             ---------------------------------------------------------CCcCceEEEEccCccccccCCcc
Confidence                                                                     1123489999999864321    


Q ss_pred             ------ccccCCCCCCccChHHhhc-----CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCch-----HHHHHHH
Q 013220          269 ------QFAEEIQTRQYRAPEVILR-----AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDE-----DHLALMM  332 (447)
Q Consensus       269 ------~~~~~~gt~~y~aPE~l~~-----~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~-----~~~~~~~  332 (447)
                            .....+||+.|+|||++.+     ..++.++|||||||++|+|++|..||............     .....+ 
T Consensus       171 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~-  249 (316)
T 2ac3_A          171 SPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNML-  249 (316)
T ss_dssp             -----------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHH-
T ss_pred             ccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHHHH-
Confidence                  1123468999999999975     45789999999999999999999999876432110000     000000 


Q ss_pred             HHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCCh----hhHHHHHHHHhhccccCCCCCCChHH
Q 013220          333 ELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSE----TDAREFAEFLVPLLDFTPEKRPTAQQ  408 (447)
Q Consensus       333 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~ll~~~L~~dP~kRpta~e  408 (447)
                                                           ...+......++.    .++..+.+||.+||+.||++|||++|
T Consensus       250 -------------------------------------~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e  292 (316)
T 2ac3_A          250 -------------------------------------FESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQ  292 (316)
T ss_dssp             -------------------------------------HHHHHHCCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred             -------------------------------------HHHHhccCcccCchhcccCCHHHHHHHHHHhhCChhhCCCHHH
Confidence                                                 0111111112221    24668999999999999999999999


Q ss_pred             HhcCcccccc
Q 013220          409 CLQHPWLSLR  418 (447)
Q Consensus       409 lL~hp~f~~~  418 (447)
                      +|+||||+..
T Consensus       293 ~l~hp~~~~~  302 (316)
T 2ac3_A          293 VLQHPWVQGC  302 (316)
T ss_dssp             HHHSTTCC--
T ss_pred             HhcChhhcCC
Confidence            9999999864

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=3.6e-42  Score=339.65  Aligned_cols=252  Identities=28%  Similarity=0.465  Sum_probs=205.5

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      .|...++||+|+||+||+|++..+++.||||++.... ...+.+.+|+++++.+      .|+||+++++++...    .
T Consensus        46 ~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~~~~~~~~~----~  115 (321)
T 2c30_A           46 LLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDY------QHFNVVEMYKSYLVG----E  115 (321)
T ss_dssp             HEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTC------CCTTBCCEEEEEEET----T
T ss_pred             hhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhC------CCCCcceEEEEEEEC----C
Confidence            4899999999999999999999899999999886543 2345688999999998      789999999998854    6


Q ss_pred             eEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          116 HLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       116 ~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      ..++||||+ +++|.+++..   ..+++..+..++.|++.||+|||++ ||+||||||+||++                 
T Consensus       116 ~~~lv~e~~~~~~L~~~l~~---~~l~~~~~~~i~~qi~~~L~~LH~~-~ivH~Dlkp~NIll-----------------  174 (321)
T 2c30_A          116 ELWVLMEFLQGGALTDIVSQ---VRLNEEQIATVCEAVLQALAYLHAQ-GVIHRDIKSDSILL-----------------  174 (321)
T ss_dssp             EEEEEECCCCSCBHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEE-----------------
T ss_pred             EEEEEEecCCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEE-----------------
Confidence            899999999 8899888753   3589999999999999999999997 99999999999999                 


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---cc
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FA  271 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~~  271 (447)
                                                                             +.++.++|+|||++......   ..
T Consensus       175 -------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~~~  199 (321)
T 2c30_A          175 -------------------------------------------------------TLDGRVKLSDFGFCAQISKDVPKRK  199 (321)
T ss_dssp             -------------------------------------------------------CTTCCEEECCCTTCEECCSSSCCBC
T ss_pred             -------------------------------------------------------CCCCcEEEeeeeeeeecccCccccc
Confidence                                                                   34567999999998765432   23


Q ss_pred             cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccc
Q 013220          272 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  351 (447)
Q Consensus       272 ~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  351 (447)
                      ..+||+.|+|||++.+..++.++|||||||++|+|++|..||...+      ....+..+..   ..+..          
T Consensus       200 ~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~------~~~~~~~~~~---~~~~~----------  260 (321)
T 2c30_A          200 SLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDS------PVQAMKRLRD---SPPPK----------  260 (321)
T ss_dssp             CCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC------HHHHHHHHHH---SSCCC----------
T ss_pred             cccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHhc---CCCCC----------
Confidence            4579999999999998889999999999999999999999997542      1111111111   10000          


Q ss_pred             hhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          352 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                .......+..+.+||.+||+.||++|||++|+|+||||....
T Consensus       261 --------------------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~hp~~~~~~  302 (321)
T 2c30_A          261 --------------------------LKNSHKVSPVLRDFLERMLVRDPQERATAQELLDHPFLLQTG  302 (321)
T ss_dssp             --------------------------CTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGGGCC
T ss_pred             --------------------------cCccccCCHHHHHHHHHHccCChhhCcCHHHHhcChhhccCC
Confidence                                      001123466889999999999999999999999999998654

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=2.5e-42  Score=350.18  Aligned_cols=255  Identities=24%  Similarity=0.395  Sum_probs=201.8

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      +.+|++.++||+|+||+||+|.+.. ++.||||++...   ....+.+.+|+++++.+.+    .|+||+++++++... 
T Consensus        55 ~~~y~~~~~LG~G~fg~Vy~~~~~~-~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~----~~~~iv~~~~~~~~~-  128 (390)
T 2zmd_A           55 GRIYSILKQIGSGGSSKVFQVLNEK-KQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQ----HSDKIIRLYDYEITD-  128 (390)
T ss_dssp             TEEEEEEEEEECCSSEEEEEEECTT-CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTT----TCTTBCCEEEEEECS-
T ss_pred             CCceEEEEEEccCCCeEEEEEEcCC-CCEEEEEEEecccccHHHHHHHHHHHHHHHHccc----CCCeEEEEEEEEecC-
Confidence            4679999999999999999999865 889999987643   3445678999999999963    479999999988753 


Q ss_pred             CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          112 PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       112 ~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                         ..+|+|||+.+++|.+++...  ..+++..+..++.||+.||+|||++ ||+||||||+|||+.             
T Consensus       129 ---~~~~lv~E~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~lH~~-~ivHrDlkp~NIll~-------------  189 (390)
T 2zmd_A          129 ---QYIYMVMECGNIDLNSWLKKK--KSIDPWERKSYWKNMLEAVHTIHQH-GIVHSDLKPANFLIV-------------  189 (390)
T ss_dssp             ---SEEEEEEECCSEEHHHHHHHC--SSCCHHHHHHHHHHHHHHHHHHHTT-TCCCCCCCGGGEEES-------------
T ss_pred             ---CEEEEEEecCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeecCCCHHHEEEE-------------
Confidence               679999996688999988754  3588999999999999999999996 999999999999992             


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                  +..+||+|||++......  
T Consensus       190 ------------------------------------------------------------~~~~kl~DFG~a~~~~~~~~  209 (390)
T 2zmd_A          190 ------------------------------------------------------------DGMLKLIDFGIANQMQPDTT  209 (390)
T ss_dssp             ------------------------------------------------------------SSCEEECCCSSSCCC-----
T ss_pred             ------------------------------------------------------------CCeEEEEecCccccccCCCc
Confidence                                                                        246999999999755422  


Q ss_pred             ---cccCCCCCCccChHHhhc-----------CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHh
Q 013220          270 ---FAEEIQTRQYRAPEVILR-----------AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI  335 (447)
Q Consensus       270 ---~~~~~gt~~y~aPE~l~~-----------~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~  335 (447)
                         ....+||+.|+|||++.+           ..++.++|||||||++|+|++|..||....     .   ....+..++
T Consensus       210 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~-----~---~~~~~~~~~  281 (390)
T 2zmd_A          210 SVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII-----N---QISKLHAII  281 (390)
T ss_dssp             ----CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCC-----C---HHHHHHHHH
T ss_pred             cccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhh-----H---HHHHHHHHh
Confidence               234579999999999975           368899999999999999999999996532     1   111222221


Q ss_pred             CCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          336 GKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       336 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      ....                                     ...++...+..+.+||.+||+.||++|||++|+|+||||
T Consensus       282 ~~~~-------------------------------------~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~hp~~  324 (390)
T 2zmd_A          282 DPNH-------------------------------------EIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYV  324 (390)
T ss_dssp             CTTS-------------------------------------CCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHH
T ss_pred             Cccc-------------------------------------cCCCCccchHHHHHHHHHHcccChhhCCCHHHHhhCcCc
Confidence            1100                                     011223335688999999999999999999999999999


Q ss_pred             cccc
Q 013220          416 SLRN  419 (447)
Q Consensus       416 ~~~~  419 (447)
                      +...
T Consensus       325 ~~~~  328 (390)
T 2zmd_A          325 QIQT  328 (390)
T ss_dssp             HSCC
T ss_pred             cccC
Confidence            8643

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=2.6e-42  Score=335.27  Aligned_cols=252  Identities=28%  Similarity=0.430  Sum_probs=208.9

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh----HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA----AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~----~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      .++|++.+.||+|+||+||+|++..+++.||+|++...    ....+.+.+|+++++.+      .|+||+++++++.. 
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~-   86 (294)
T 2rku_A           14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSL------AHQHVVGFHGFFED-   86 (294)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTC------CCTTBCCEEEEEEC-
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhC------CCCCEeeeeeeecc-
Confidence            37999999999999999999999999999999987654    23456788899999998      78999999999875 


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                         ....++||||+ +++|.+++...  ..+++..+..++.|++.||+|||++ ||+||||||+||++            
T Consensus        87 ---~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~-~i~H~dl~p~Nil~------------  148 (294)
T 2rku_A           87 ---NDFVFVVLELCRRRSLLELHKRR--KALTEPEARYYLRQIVLGCQYLHRN-RVIHRDLKLGNLFL------------  148 (294)
T ss_dssp             ---SSEEEEEEECCTTCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEE------------
T ss_pred             ---CCEEEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCChHhEEE------------
Confidence               36899999999 78998887654  3589999999999999999999997 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc-
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-  268 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~-  268 (447)
                                                                                  +..+.++|+|||.+..... 
T Consensus       149 ------------------------------------------------------------~~~~~~kl~dfg~~~~~~~~  168 (294)
T 2rku_A          149 ------------------------------------------------------------NEDLEVKIGDFGLATKVEYD  168 (294)
T ss_dssp             ------------------------------------------------------------CTTCCEEECCCTTCEECCST
T ss_pred             ------------------------------------------------------------cCCCCEEEEeccCceecccC
Confidence                                                                        3456799999999975432 


Q ss_pred             --ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCC
Q 013220          269 --QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  346 (447)
Q Consensus       269 --~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  346 (447)
                        ......|++.|+|||.+.+..++.++|||||||++|+|++|..||....      .....   ..             
T Consensus       169 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~------~~~~~---~~-------------  226 (294)
T 2rku_A          169 GERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSC------LKETY---LR-------------  226 (294)
T ss_dssp             TCCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSS------HHHHH---HH-------------
T ss_pred             ccccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHH---HH-------------
Confidence              2334578999999999998889999999999999999999999996542      11111   11             


Q ss_pred             CCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          347 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                +......++...+..+.+||.+||+.||++|||++|+|+||||+...
T Consensus       227 --------------------------~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~~~~~~~~  273 (294)
T 2rku_A          227 --------------------------IKKNEYSIPKHINPVAASLIQKMLQTDPTARPTINELLNDEFFTSGY  273 (294)
T ss_dssp             --------------------------HHTTCCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHHHHTSC
T ss_pred             --------------------------HhhccCCCccccCHHHHHHHHHHcccChhhCcCHHHHhhChheecCC
Confidence                                      11111223445567899999999999999999999999999998654

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=4.7e-42  Score=336.10  Aligned_cols=290  Identities=26%  Similarity=0.443  Sum_probs=212.8

Q ss_pred             CccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh-HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           30 GDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA-AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        30 g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      |..++ ++|++.+.||+|+||+||+|++..+++.||+|++... ....+.+.+|+++++.+      .|+||+++++++.
T Consensus         6 ~~~~~-~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~   78 (320)
T 2i6l_A            6 GFDLG-SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRL------DHDNIVKVFEILG   78 (320)
T ss_dssp             CEEET-TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTC------CCTTBCCEEEEEC
T ss_pred             cCccC-CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhc------CCCCeeEEEEecc
Confidence            55564 7999999999999999999999999999999977543 34456788999999999      7899999998875


Q ss_pred             ccC----------CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEee
Q 013220          109 HAG----------PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV  178 (447)
Q Consensus       109 ~~~----------~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~  178 (447)
                      ..+          ......++||||++++|.+++..   ..+++..+..++.|++.||+|||++ ||+||||||+||++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~Nil~~  154 (320)
T 2i6l_A           79 PSGSQLTDDVGSLTELNSVYIVQEYMETDLANVLEQ---GPLLEEHARLFMYQLLRGLKYIHSA-NVLHRDLKPANLFIN  154 (320)
T ss_dssp             TTSCBCCC----CCSCSEEEEEEECCSEEHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCSGGGEEEE
T ss_pred             ccccccccccccccccCceeEEeeccCCCHHHHhhc---CCccHHHHHHHHHHHHHHHHHHHhC-CEecCCCCHHHEEEc
Confidence            432          23468999999998899888753   4589999999999999999999996 999999999999994


Q ss_pred             ecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEe
Q 013220          179 STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVV  258 (447)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~  258 (447)
                      .                                                                       ....+||+
T Consensus       155 ~-----------------------------------------------------------------------~~~~~kl~  163 (320)
T 2i6l_A          155 T-----------------------------------------------------------------------EDLVLKIG  163 (320)
T ss_dssp             T-----------------------------------------------------------------------TTTEEEEC
T ss_pred             C-----------------------------------------------------------------------CCCeEEEc
Confidence            2                                                                       24579999


Q ss_pred             ecCccccccc------ccccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHH
Q 013220          259 DFGNACRANK------QFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALM  331 (447)
Q Consensus       259 Dfg~a~~~~~------~~~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~  331 (447)
                      |||.+.....      ......++..|+|||.+.+ ..++.++|||||||++|+|++|..||...      .....+..+
T Consensus       164 Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~------~~~~~~~~~  237 (320)
T 2i6l_A          164 DFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGA------HELEQMQLI  237 (320)
T ss_dssp             CCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHH
T ss_pred             cCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCC------CHHHHHHHH
Confidence            9999975432      1223457899999999876 57899999999999999999999999765      345555566


Q ss_pred             HHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          332 MELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       332 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                      .+..+..............+.+..     .........+.       .....++.++.+||.+||+.||++|||++|+|+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-------~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  305 (320)
T 2i6l_A          238 LESIPVVHEEDRQELLSVIPVYIR-----NDMTEPHKPLT-------QLLPGISREAVDFLEQILTFSPMDRLTAEEALS  305 (320)
T ss_dssp             HHHSCCCCHHHHHHHHTTSCHHHH-----HHTTSCCCCHH-------HHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             HHhcCCCchhhhhhhhhcCccccc-----ccccCCCCChh-------HhcchhhHHHHHHHHHHcCCCccccCCHHHHhC
Confidence            555554443321100000000000     00000000000       012345678999999999999999999999999


Q ss_pred             Cccccccc
Q 013220          412 HPWLSLRN  419 (447)
Q Consensus       412 hp~f~~~~  419 (447)
                      ||||+...
T Consensus       306 hp~~~~~~  313 (320)
T 2i6l_A          306 HPYMSIYS  313 (320)
T ss_dssp             SHHHHTTC
T ss_pred             Cccccccc
Confidence            99999654

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=3.4e-42  Score=362.28  Aligned_cols=258  Identities=26%  Similarity=0.371  Sum_probs=212.8

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH----hHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ----FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~----~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      .++|.+.+.||+|+||.||+|++..+++.||+|++.....    ....+.+|.++++.+      +|++|++++.+|...
T Consensus       184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l------~hp~Iv~l~~~~~~~  257 (543)
T 3c4z_A          184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKV------HSRFIVSLAYAFETK  257 (543)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHC------CCTTBCCEEEEEECS
T ss_pred             hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhc------CCCCEeeEEEEEeeC
Confidence            4789999999999999999999999999999999875532    235688899999999      789999999998753


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSR--YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~--~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                          ..+|+||||+ |++|...+....  ...+++..++.++.||+.||+|||++ ||+||||||+||++          
T Consensus       258 ----~~l~lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~-gIvHrDLKP~NILl----------  322 (543)
T 3c4z_A          258 ----TDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQR-NIIYRDLKPENVLL----------  322 (543)
T ss_dssp             ----SEEEEEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEE----------
T ss_pred             ----CEEEEEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHc-CCcccCCChHHEEE----------
Confidence                6899999999 889998886532  34589999999999999999999996 99999999999999          


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                    +..+.+||+|||++....
T Consensus       323 --------------------------------------------------------------~~~g~vkL~DFGla~~~~  340 (543)
T 3c4z_A          323 --------------------------------------------------------------DDDGNVRISDLGLAVELK  340 (543)
T ss_dssp             --------------------------------------------------------------CTTSCEEECCCTTCEECC
T ss_pred             --------------------------------------------------------------eCCCCEEEeecceeeecc
Confidence                                                                          446789999999997654


Q ss_pred             cc---cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhh
Q 013220          268 KQ---FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  344 (447)
Q Consensus       268 ~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (447)
                      ..   ....+||+.|+|||++.+..++.++|+|||||++|+|++|..||.......  ......                
T Consensus       341 ~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~--~~~~~~----------------  402 (543)
T 3c4z_A          341 AGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKV--ENKELK----------------  402 (543)
T ss_dssp             TTCCCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCC--CHHHHH----------------
T ss_pred             CCCcccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccch--hHHHHH----------------
Confidence            32   233589999999999999899999999999999999999999997653211  001111                


Q ss_pred             CCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCC-----hHHHhcCccccccc
Q 013220          345 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLRN  419 (447)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpt-----a~elL~hp~f~~~~  419 (447)
                                                ..+......++...+..+.+||.+||+.||++||+     ++++++||||+..+
T Consensus       403 --------------------------~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~Hpff~~i~  456 (543)
T 3c4z_A          403 --------------------------QRVLEQAVTYPDKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRTHPLFRDIS  456 (543)
T ss_dssp             --------------------------HHHHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHTSGGGTTCC
T ss_pred             --------------------------HHHhhcccCCCcccCHHHHHHHHHhccCCHhHCCCCcccCHHHHHcCccccCCC
Confidence                                      11222223355666789999999999999999996     58999999999754

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=1.1e-42  Score=342.83  Aligned_cols=268  Identities=23%  Similarity=0.344  Sum_probs=208.9

Q ss_pred             cCCCCCCCccccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH-------hHHHHHHHHHHHHH
Q 013220           16 IDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ-------FAQAALHEIEVLSA   88 (447)
Q Consensus        16 ~~~~~~~~~~~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~-------~~~~~~~E~~~l~~   88 (447)
                      ...+....+.|...++.+. ++|++.+.||+|+||+||+|++..+++.||+|++.....       ....+.+|+++++.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~-~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~  102 (320)
T 3a99_A           24 CNDLHATKLAPGKEKEPLE-SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKK  102 (320)
T ss_dssp             ----------------CCT-TTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHH
T ss_pred             HHHhhhhccCcccccCCcc-CceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHh
Confidence            3456667888999999996 799999999999999999999999999999998876532       22467789999999


Q ss_pred             hhcCCCCCcceeeeecccccccCCCcceEEEEEecc-c-ccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcc
Q 013220           89 VADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-G-DSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGII  166 (447)
Q Consensus        89 l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~-~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIi  166 (447)
                      +.+    .|+||+++++++...    ...++|||++ + ++|.+++...  ..+++..+..++.|++.||+|||++ ||+
T Consensus       103 l~~----~~~~i~~~~~~~~~~----~~~~lv~e~~~~~~~L~~~l~~~--~~l~~~~~~~i~~qi~~~L~~LH~~-~iv  171 (320)
T 3a99_A          103 VSS----GFSGVIRLLDWFERP----DSFVLILERPEPVQDLFDFITER--GALQEELARSFFWQVLEAVRHCHNC-GVL  171 (320)
T ss_dssp             HCS----SSCSBCCEEEEEECS----SEEEEEEECCSSEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT-TEE
T ss_pred             hcc----CCCCceEEEEEEecC----CcEEEEEEcCCCCccHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC-CcE
Confidence            954    579999999998753    6899999999 4 7899888754  3589999999999999999999996 999


Q ss_pred             cccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCc
Q 013220          167 HTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPER  246 (447)
Q Consensus       167 H~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (447)
                      ||||||+||+++.                                                                   
T Consensus       172 H~Dlkp~NIll~~-------------------------------------------------------------------  184 (320)
T 3a99_A          172 HRDIKDENILIDL-------------------------------------------------------------------  184 (320)
T ss_dssp             CCCCSGGGEEEET-------------------------------------------------------------------
T ss_pred             eCCCCHHHEEEeC-------------------------------------------------------------------
Confidence            9999999999942                                                                   


Q ss_pred             cCCCcccceeEeecCcccccccc-cccCCCCCCccChHHhhcCCC-CccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCc
Q 013220          247 CLDGIDMRCKVVDFGNACRANKQ-FAEEIQTRQYRAPEVILRAGY-SFSVDMWSFACTAFELATGDMLFAPKSGQGFCED  324 (447)
Q Consensus       247 ~~~~~~~~~kL~Dfg~a~~~~~~-~~~~~gt~~y~aPE~l~~~~~-~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~  324 (447)
                          ....+||+|||++...... .....||+.|+|||.+.+..+ +.++|||||||++|+|++|..||....       
T Consensus       185 ----~~~~~kL~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~-------  253 (320)
T 3a99_A          185 ----NRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE-------  253 (320)
T ss_dssp             ----TTTEEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH-------
T ss_pred             ----CCCCEEEeeCccccccccccccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChh-------
Confidence                2467999999999765433 334578999999999988776 688999999999999999999995321       


Q ss_pred             hHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC
Q 013220          325 EDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP  404 (447)
Q Consensus       325 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp  404 (447)
                           .                                          +......++...++.+.+||.+||+.||++||
T Consensus       254 -----~------------------------------------------~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp  286 (320)
T 3a99_A          254 -----E------------------------------------------IIRGQVFFRQRVSSECQHLIRWCLALRPSDRP  286 (320)
T ss_dssp             -----H------------------------------------------HHHCCCCCSSCCCHHHHHHHHHHTCSSGGGSC
T ss_pred             -----h------------------------------------------hhcccccccccCCHHHHHHHHHHccCChhhCc
Confidence                 0                                          00011112334567899999999999999999


Q ss_pred             ChHHHhcCcccccccC
Q 013220          405 TAQQCLQHPWLSLRNS  420 (447)
Q Consensus       405 ta~elL~hp~f~~~~~  420 (447)
                      |++|+++||||++...
T Consensus       287 s~~~ll~hp~~~~~~~  302 (320)
T 3a99_A          287 TFEEIQNHPWMQDVLL  302 (320)
T ss_dssp             CHHHHHTSGGGSSCCC
T ss_pred             CHHHHhcCHhhcCccC
Confidence            9999999999997654

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=6.2e-42  Score=342.10  Aligned_cols=253  Identities=27%  Similarity=0.371  Sum_probs=205.7

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh----HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA----AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~----~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|.+.+.||+|+||+||+|++..+++.||||++...    ....+.+.+|+++++.+      .|+||+++++++... 
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l------~hpniv~~~~~~~~~-  126 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKL------RHPNTIQYRGCYLRE-  126 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHC------CCTTBCCEEEEEEET-
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhC------CCCCEeeEEEEEEEC-
Confidence            4699999999999999999999999999999987532    23346788999999999      789999999998753 


Q ss_pred             CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          112 PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       112 ~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                         ...++||||+.+++.+.+.... ..+++..+..++.|++.||+|||++ ||+||||||+||+++             
T Consensus       127 ---~~~~lv~e~~~g~l~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dlkp~NIll~-------------  188 (348)
T 1u5q_A          127 ---HTAWLVMEYCLGSASDLLEVHK-KPLQEVEIAAVTHGALQGLAYLHSH-NMIHRDVKAGNILLS-------------  188 (348)
T ss_dssp             ---TEEEEEEECCSEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCSGGGEEEE-------------
T ss_pred             ---CeEEEEEecCCCCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhC-CeeeCCCCHHHEEEC-------------
Confidence               6899999999878888775433 4689999999999999999999997 999999999999993             


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccc
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA  271 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~  271 (447)
                                                                                 ..+.+||+|||++..... ..
T Consensus       189 -----------------------------------------------------------~~~~~kL~DfG~a~~~~~-~~  208 (348)
T 1u5q_A          189 -----------------------------------------------------------EPGLVKLGDFGSASIMAP-AN  208 (348)
T ss_dssp             -----------------------------------------------------------TTTEEEECCCTTCBSSSS-BC
T ss_pred             -----------------------------------------------------------CCCCEEEeeccCceecCC-CC
Confidence                                                                       356899999999976543 24


Q ss_pred             cCCCCCCccChHHhh---cCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          272 EEIQTRQYRAPEVIL---RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       272 ~~~gt~~y~aPE~l~---~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      ..+||+.|+|||++.   +..++.++|||||||++|+|++|..||...+      ....+..+.+  +..+         
T Consensus       209 ~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~------~~~~~~~~~~--~~~~---------  271 (348)
T 1u5q_A          209 SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN------AMSALYHIAQ--NESP---------  271 (348)
T ss_dssp             CCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC------HHHHHHHHHH--SCCC---------
T ss_pred             cccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHh--cCCC---------
Confidence            568999999999996   4568999999999999999999999997542      1111111111  0000         


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                   ...+...++.+.+||.+||+.||++|||++++|+||||....
T Consensus       272 -----------------------------~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~h~~~~~~~  313 (348)
T 1u5q_A          272 -----------------------------ALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLRER  313 (348)
T ss_dssp             -----------------------------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTCHHHHSCC
T ss_pred             -----------------------------CCCCCCCCHHHHHHHHHHcccChhhCcCHHHHhhChhhhccC
Confidence                                         001223466889999999999999999999999999997654

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=9e-43  Score=356.68  Aligned_cols=258  Identities=30%  Similarity=0.456  Sum_probs=197.4

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---------HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---------QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDH  106 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---------~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~  106 (447)
                      ++|.+.+.||+|+||+||+|.+..+++.||+|++....         .....+.+|+++++.+      +|+||++++++
T Consensus       135 ~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l------~hpniv~l~~~  208 (419)
T 3i6u_A          135 DEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKL------NHPCIIKIKNF  208 (419)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHC------CCTTBCCCCEE
T ss_pred             ccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhC------CCCCEeeEEEE
Confidence            68999999999999999999999999999999876542         1123578899999999      89999999998


Q ss_pred             ccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCC
Q 013220          107 FKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK  185 (447)
Q Consensus       107 ~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~  185 (447)
                      +..     ...++||||+ +++|.+.+...  ..+++..+..++.|++.||+|||++ ||+||||||+||++...     
T Consensus       209 ~~~-----~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~-~ivHrDlkp~NIll~~~-----  275 (419)
T 3i6u_A          209 FDA-----EDYYIVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLLAVQYLHEN-GIIHRDLKPENVLLSSQ-----  275 (419)
T ss_dssp             EES-----SEEEEEEECCTTCBGGGGTSSS--CCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEESSS-----
T ss_pred             Eec-----CceEEEEEcCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCChHhEEEecC-----
Confidence            753     3589999999 88888776543  4589999999999999999999996 99999999999999431     


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccc
Q 013220          186 DPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR  265 (447)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~  265 (447)
                                                                                      .....+||+|||++..
T Consensus       276 ----------------------------------------------------------------~~~~~~kl~DFG~a~~  291 (419)
T 3i6u_A          276 ----------------------------------------------------------------EEDCLIKITDFGHSKI  291 (419)
T ss_dssp             ----------------------------------------------------------------SSSCCEEECCSSTTTS
T ss_pred             ----------------------------------------------------------------CCcceEEEeeccccee
Confidence                                                                            2245699999999976


Q ss_pred             cccc--cccCCCCCCccChHHhhc---CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCH
Q 013220          266 ANKQ--FAEEIQTRQYRAPEVILR---AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  340 (447)
Q Consensus       266 ~~~~--~~~~~gt~~y~aPE~l~~---~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~  340 (447)
                      ....  ....+||+.|+|||++.+   ..++.++|||||||++|+|++|..||......     ......+....-..+.
T Consensus       292 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~-----~~~~~~i~~~~~~~~~  366 (419)
T 3i6u_A          292 LGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQ-----VSLKDQITSGKYNFIP  366 (419)
T ss_dssp             CC-----------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSS-----CCHHHHHHTTCCCCCH
T ss_pred             cCCCccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcch-----HHHHHHHhcCCCCCCc
Confidence            5433  234579999999999863   56789999999999999999999999765311     1111111100000000


Q ss_pred             HhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          341 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                     .       ....+++.+.+||.+||+.||++|||++|+|+||||++..
T Consensus       367 -------------------------------~-------~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~~~~~~  407 (419)
T 3i6u_A          367 -------------------------------E-------VWAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQDED  407 (419)
T ss_dssp             -------------------------------H-------HHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGCCHH
T ss_pred             -------------------------------h-------hhcccCHHHHHHHHHHccCChhHCcCHHHHhCCcccCChh
Confidence                                           0       0123466899999999999999999999999999998643

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=2e-42  Score=332.56  Aligned_cols=255  Identities=28%  Similarity=0.436  Sum_probs=200.8

Q ss_pred             CccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecc
Q 013220           30 GDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLID  105 (447)
Q Consensus        30 g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~  105 (447)
                      |++.. ++|++.+.||+|+||.||+|++..+++.||+|++....    ...+.+.+|+++++.+      .|+||+++++
T Consensus         6 g~~~~-~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~   78 (276)
T 2h6d_A            6 GRVKI-GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLF------RHPHIIKLYQ   78 (276)
T ss_dssp             -CCEE-TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTC------CCTTBCCEEE
T ss_pred             Cccee-ccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcC------CCCCEeEEEE
Confidence            44443 79999999999999999999999999999999887543    2245788899999998      7899999999


Q ss_pred             cccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCC
Q 013220          106 HFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       106 ~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~  184 (447)
                      ++..    ....++||||+ +++|.+.+...  ..+++..+..++.|++.||+|||++ ||+|+||||+||++       
T Consensus        79 ~~~~----~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~Nil~-------  144 (276)
T 2h6d_A           79 VIST----PTDFFMVMEYVSGGELFDYICKH--GRVEEMEARRLFQQILSAVDYCHRH-MVVHRDLKPENVLL-------  144 (276)
T ss_dssp             EEEC----SSEEEEEEECCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHH-CSSCCCCCGGGEEE-------
T ss_pred             EEec----CCeEEEEEeccCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC-CCccCCCChhhEEE-------
Confidence            9875    36899999999 78999988754  3489999999999999999999997 99999999999999       


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                       +....++|+|||.+.
T Consensus       145 -----------------------------------------------------------------~~~~~~~l~dfg~~~  159 (276)
T 2h6d_A          145 -----------------------------------------------------------------DAHMNAKIADFGLSN  159 (276)
T ss_dssp             -----------------------------------------------------------------CTTSCEEECCCCGGG
T ss_pred             -----------------------------------------------------------------CCCCCEEEeeccccc
Confidence                                                                             345679999999997


Q ss_pred             ccccc--cccCCCCCCccChHHhhcCCC-CccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          265 RANKQ--FAEEIQTRQYRAPEVILRAGY-SFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       265 ~~~~~--~~~~~gt~~y~aPE~l~~~~~-~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                      .....  .....+++.|+|||.+.+..+ +.++|||||||++|+|++|..||...+      .......+          
T Consensus       160 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~------~~~~~~~~----------  223 (276)
T 2h6d_A          160 MMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEH------VPTLFKKI----------  223 (276)
T ss_dssp             CCCC-------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHH----------
T ss_pred             ccCCCcceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCc------HHHHHHHh----------
Confidence            65432  234468999999999988765 689999999999999999999996542      11111111          


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                                                      .......+...+..+.+||.+||+.||++|||++|+++||||+..
T Consensus       224 --------------------------------~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~h~~~~~~  268 (276)
T 2h6d_A          224 --------------------------------RGGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFKQD  268 (276)
T ss_dssp             --------------------------------HHCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHSHHHHTT
T ss_pred             --------------------------------hcCcccCchhcCHHHHHHHHHHccCChhhCCCHHHHHhChhhccC
Confidence                                            111112334456789999999999999999999999999999864

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=2.6e-42  Score=332.42  Aligned_cols=270  Identities=22%  Similarity=0.314  Sum_probs=202.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.+.||+|+||+||+|++..+++.||+|+++..   ......+.+|+..+..+.     .|+||+++++++...  
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~-----~h~~iv~~~~~~~~~--   83 (289)
T 1x8b_A           11 TEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLG-----QHSHVVRYFSAWAED--   83 (289)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSC-----SCTTBCCEEEEEEET--
T ss_pred             chhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhC-----CCCCeeeeeeeeecC--
Confidence            6899999999999999999999999999999987743   234567788888888874     789999999998754  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRY--KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~--~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                        ...++||||+ +++|.+++.....  ..+++..+..++.||+.||+|||++ ||+||||||+||++............
T Consensus        84 --~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~ivH~Dikp~NIl~~~~~~~~~~~~~  160 (289)
T 1x8b_A           84 --DHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSM-SLVHMDIKPSNIFISRTSIPNAASEE  160 (289)
T ss_dssp             --TEEEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEC-----------
T ss_pred             --CeEEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhC-CEeecCCCHHHEEEcCCCCCcccccc
Confidence              6899999999 7899998865422  4589999999999999999999997 99999999999999542110000000


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                           ............++|+|||.+......
T Consensus       161 -----------------------------------------------------~~~~~~~~~~~~~kl~Dfg~~~~~~~~  187 (289)
T 1x8b_A          161 -----------------------------------------------------GDEDDWASNKVMFKIGDLGHVTRISSP  187 (289)
T ss_dssp             --------------------------------------------------------------CCCEEECCCTTCEETTCS
T ss_pred             -----------------------------------------------------cccccccCCceEEEEcccccccccCCc
Confidence                                                                 000000023457999999999766543


Q ss_pred             cccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          270 FAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                       ....||+.|+|||.+.+. .++.++|||||||++|+|++|..|+...         .....+.+  +.           
T Consensus       188 -~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~---------~~~~~~~~--~~-----------  244 (289)
T 1x8b_A          188 -QVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNG---------DQWHEIRQ--GR-----------  244 (289)
T ss_dssp             -CCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSS---------HHHHHHHT--TC-----------
T ss_pred             -cccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcch---------hHHHHHHc--CC-----------
Confidence             334689999999999876 5678999999999999999998776432         11111110  00           


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                  ...++...+..+.+||.+||+.||++|||+.|+|+||||+...
T Consensus       245 ----------------------------~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~  287 (289)
T 1x8b_A          245 ----------------------------LPRIPQVLSQEFTELLKVMIHPDPERRPSAMALVKHSVLLSAS  287 (289)
T ss_dssp             ----------------------------CCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTCTTC----
T ss_pred             ----------------------------CCCCCcccCHHHHHHHHHHhCCCcccCCCHHHHhhChHhhhhc
Confidence                                        0123344567899999999999999999999999999999643

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.2e-42  Score=340.39  Aligned_cols=261  Identities=27%  Similarity=0.437  Sum_probs=205.2

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC-
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN-  113 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~-  113 (447)
                      .++|++.+.||+|+||.||+|++..+++.||+|++.........+.+|+++++.+.     .|+||+++++++...... 
T Consensus        23 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~-----~h~~i~~~~~~~~~~~~~~   97 (326)
T 2x7f_A           23 AGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYS-----HHRNIATYYGAFIKKNPPG   97 (326)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSTTHHHHHHHHHHHHHC-----CSTTBCCEEEEEEECC--C
T ss_pred             CCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcccHHHHHHHHHHHHhcc-----CCCCeeeeeeEEeeccCcc
Confidence            47999999999999999999999999999999998766555678899999999985     689999999998764321 


Q ss_pred             -cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          114 -GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       114 -~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                       ....++||||+ +++|.+++.......+++..+..++.||+.||+|||++ ||+|+||||+||++              
T Consensus        98 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~ivH~dlkp~NIl~--------------  162 (326)
T 2x7f_A           98 MDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQH-KVIHRDIKGQNVLL--------------  162 (326)
T ss_dssp             CCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSGGGEEE--------------
T ss_pred             ccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCcHHHEEE--------------
Confidence             36899999999 77999998765445689999999999999999999997 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                +..+.++|+|||++......  
T Consensus       163 ----------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~  184 (326)
T 2x7f_A          163 ----------------------------------------------------------TENAEVKLVDFGVSAQLDRTVG  184 (326)
T ss_dssp             ----------------------------------------------------------CTTCCEEECCCTTTC-------
T ss_pred             ----------------------------------------------------------cCCCCEEEeeCcCceecCcCcc
Confidence                                                                      34567999999998765432  


Q ss_pred             -cccCCCCCCccChHHhh-----cCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhh
Q 013220          270 -FAEEIQTRQYRAPEVIL-----RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  343 (447)
Q Consensus       270 -~~~~~gt~~y~aPE~l~-----~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  343 (447)
                       .....|++.|+|||.+.     +..++.++|||||||++|+|++|..||....      ....+..+..  +..+    
T Consensus       185 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~------~~~~~~~~~~--~~~~----  252 (326)
T 2x7f_A          185 RRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMH------PMRALFLIPR--NPAP----  252 (326)
T ss_dssp             ------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSC------HHHHHHHHHH--SCCC----
T ss_pred             ccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCc------HHHHHHHhhc--Cccc----
Confidence             23457899999999997     4568899999999999999999999996542      1111111110  0000    


Q ss_pred             hCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          344 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                        ...+...+..+.+||.+||+.||++|||++++|+||||+...
T Consensus       253 ----------------------------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~hp~~~~~~  294 (326)
T 2x7f_A          253 ----------------------------------RLKSKKWSKKFQSFIESCLVKNHSQRPATEQLMKHPFIRDQP  294 (326)
T ss_dssp             ----------------------------------CCSCSCSCHHHHHHHHHHCCSSGGGSCCHHHHHTSHHHHCCT
T ss_pred             ----------------------------------cCCccccCHHHHHHHHHHhccChhhCCCHHHHhhChHHhhCc
Confidence                                              001223466899999999999999999999999999999754

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=2.8e-42  Score=342.13  Aligned_cols=252  Identities=28%  Similarity=0.422  Sum_probs=209.6

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh----HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA----AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~----~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      .++|.+.+.||+|+||.||+|++..+++.||+|++...    ....+.+.+|+++++.+      .|+||+++++++.. 
T Consensus        40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~-  112 (335)
T 2owb_A           40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSL------AHQHVVGFHGFFED-  112 (335)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTC------CCTTBCCEEEEEEC-
T ss_pred             CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhC------CCCCCCeEEEEEec-
Confidence            47899999999999999999999999999999987654    23456788899999998      78999999999875 


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                         ....++||||+ +++|.+++...  ..+++..+..++.||+.||+|||++ ||+||||||+||++            
T Consensus       113 ---~~~~~lv~e~~~~~~L~~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~-~ivH~dlkp~NIl~------------  174 (335)
T 2owb_A          113 ---NDFVFVVLELCRRRSLLELHKRR--KALTEPEARYYLRQIVLGCQYLHRN-RVIHRDLKLGNLFL------------  174 (335)
T ss_dssp             ---SSEEEEEECCCTTCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEE------------
T ss_pred             ---CCeEEEEEecCCCCCHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC-CCEecCCCchhEEE------------
Confidence               36899999999 78999887654  3589999999999999999999997 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc-
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-  268 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~-  268 (447)
                                                                                  +..+.++|+|||++..... 
T Consensus       175 ------------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~  194 (335)
T 2owb_A          175 ------------------------------------------------------------NEDLEVKIGDFGLATKVEYD  194 (335)
T ss_dssp             ------------------------------------------------------------CTTCCEEECCCTTCEECCST
T ss_pred             ------------------------------------------------------------cCCCCEEEeeccCceecccC
Confidence                                                                        3456799999999976532 


Q ss_pred             --ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCC
Q 013220          269 --QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  346 (447)
Q Consensus       269 --~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  346 (447)
                        ......|+..|+|||.+.+..++.++|||||||++|+|++|..||....      .......                
T Consensus       195 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~------~~~~~~~----------------  252 (335)
T 2owb_A          195 GERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSC------LKETYLR----------------  252 (335)
T ss_dssp             TCCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSS------HHHHHHH----------------
T ss_pred             cccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCC------HHHHHHH----------------
Confidence              2334578999999999999889999999999999999999999996542      1111111                


Q ss_pred             CCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          347 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                +......++...+..+.+||.+||+.||++|||++|+|+||||+...
T Consensus       253 --------------------------~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~~~~~~~~~  299 (335)
T 2owb_A          253 --------------------------IKKNEYSIPKHINPVAASLIQKMLQTDPTARPTINELLNDEFFTSGY  299 (335)
T ss_dssp             --------------------------HHHTCCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHHHHTSC
T ss_pred             --------------------------HhcCCCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhcCccccCCC
Confidence                                      11112223445567889999999999999999999999999998653

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=1.5e-42  Score=338.14  Aligned_cols=258  Identities=24%  Similarity=0.394  Sum_probs=207.4

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-----HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      ++|++.+.||+|+||.||+|.+..+++.||+|+++...     .....+.+|+++++.+      .|+||+++++++...
T Consensus         5 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~~   78 (305)
T 2wtk_C            5 GKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRL------RHKNVIQLVDVLYNE   78 (305)
T ss_dssp             CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTC------CCTTBCCEEEEEECC
T ss_pred             cceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhc------CCCCeeEEEEEEEcC
Confidence            68999999999999999999999999999999987653     2346788999999998      789999999988543


Q ss_pred             CCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          111 GPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       111 ~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                        +....++||||+.+++.+.+.......+++..+..++.|++.||+|||++ ||+||||||+||++             
T Consensus        79 --~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~-~i~H~dlkp~NIl~-------------  142 (305)
T 2wtk_C           79 --EKQKMYMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQ-GIVHKDIKPGNLLL-------------  142 (305)
T ss_dssp             -----CEEEEEECCSEEHHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEE-------------
T ss_pred             --CCCeEEEEehhccCCHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHC-CeeecCCCcccEEE-------------
Confidence              44689999999966687777665556699999999999999999999997 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc--
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--  268 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~--  268 (447)
                                                                                 +....++|+|||.+.....  
T Consensus       143 -----------------------------------------------------------~~~~~~kl~dfg~~~~~~~~~  163 (305)
T 2wtk_C          143 -----------------------------------------------------------TTGGTLKISALGVAEALHPFA  163 (305)
T ss_dssp             -----------------------------------------------------------CTTCCEEECCCTTCEECCTTC
T ss_pred             -----------------------------------------------------------cCCCcEEeeccccccccCccc
Confidence                                                                       3456799999999975432  


Q ss_pred             ---ccccCCCCCCccChHHhhcCC--CCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhh
Q 013220          269 ---QFAEEIQTRQYRAPEVILRAG--YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  343 (447)
Q Consensus       269 ---~~~~~~gt~~y~aPE~l~~~~--~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  343 (447)
                         ......|++.|+|||++.+..  ++.++|||||||++|+|++|..||...+      .......+            
T Consensus       164 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~------~~~~~~~i------------  225 (305)
T 2wtk_C          164 ADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDN------IYKLFENI------------  225 (305)
T ss_dssp             SSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHH------------
T ss_pred             cccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCch------HHHHHHHH------------
Confidence               123346899999999998654  3789999999999999999999997542      11111111            


Q ss_pred             hCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCCc
Q 013220          344 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR  422 (447)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~~  422 (447)
                                                    ......++...+..+.+||.+||+.||++|||++|+++||||+......
T Consensus       226 ------------------------------~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~~~~~~~~~~  274 (305)
T 2wtk_C          226 ------------------------------GKGSYAIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQHSWFRKKHPPA  274 (305)
T ss_dssp             ------------------------------HHCCCCCCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHSHHHHSCCCC-
T ss_pred             ------------------------------hcCCCCCCCccCHHHHHHHHHHccCChhhCCCHHHHhcCcccccCCCCc
Confidence                                          1111223445567899999999999999999999999999999765443

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=2.7e-42  Score=332.80  Aligned_cols=260  Identities=27%  Similarity=0.443  Sum_probs=206.6

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH-------hHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ-------FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~-------~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      ++|++.+.||+|+||+||+|++..+++.||+|+++....       ..+.+.+|+++++.+      .|+||+++++++.
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~   78 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREI------RHPNIITLHDIFE   78 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHC------CCTTBCCEEEEEE
T ss_pred             hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhC------CCCCeeehhheec
Confidence            689999999999999999999999999999998765421       246788999999999      7899999999987


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCc
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                      .    ....++||||+ +++|.+++...  ..+++..+..++.|++.||+|||++ ||+||||||+||++....      
T Consensus        79 ~----~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dl~p~Nil~~~~~------  145 (283)
T 3bhy_A           79 N----KTDVVLILELVSGGELFDFLAEK--ESLTEDEATQFLKQILDGVHYLHSK-RIAHFDLKPENIMLLDKN------  145 (283)
T ss_dssp             C----SSEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEESCSS------
T ss_pred             C----CCeEEEEEeecCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CccCCCCChHHEEEecCC------
Confidence            5    36899999999 88999988654  3589999999999999999999996 999999999999994310      


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                    .....++|+|||.+....
T Consensus       146 --------------------------------------------------------------~~~~~~kl~dfg~~~~~~  163 (283)
T 3bhy_A          146 --------------------------------------------------------------VPNPRIKLIDFGIAHKIE  163 (283)
T ss_dssp             --------------------------------------------------------------SSSCCEEECCCTTCEECC
T ss_pred             --------------------------------------------------------------CCCCceEEEecccceecc
Confidence                                                                          113469999999997654


Q ss_pred             c--ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          268 K--QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       268 ~--~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                      .  ......+++.|+|||.+.+..++.++|||||||++|+|++|..||...+      .......+.......+..    
T Consensus       164 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~------~~~~~~~~~~~~~~~~~~----  233 (283)
T 3bhy_A          164 AGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGET------KQETLTNISAVNYDFDEE----  233 (283)
T ss_dssp             --------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSS------HHHHHHHHHTTCCCCCHH----
T ss_pred             CCCcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcc------hHHHHHHhHhcccCCcch----
Confidence            3  2234578999999999998889999999999999999999999997642      222222211110000100    


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccC
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~  420 (447)
                                                        .....+..+.+||.+||+.||++|||+.|+|+||||+..+.
T Consensus       234 ----------------------------------~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~~  274 (283)
T 3bhy_A          234 ----------------------------------YFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIRR  274 (283)
T ss_dssp             ----------------------------------HHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHHHHH
T ss_pred             ----------------------------------hcccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHHHHH
Confidence                                              01223568899999999999999999999999999997653

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=6.9e-42  Score=333.22  Aligned_cols=263  Identities=22%  Similarity=0.331  Sum_probs=208.3

Q ss_pred             ccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEech----hHHhHHHHHHHHHHHHHhhcCCCCCcceeeee
Q 013220           28 RVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKS----AAQFAQAALHEIEVLSAVADGDPSNEKCVIRL  103 (447)
Q Consensus        28 ~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~----~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~  103 (447)
                      .+|++++ ++|++.+.||+|+||+||+|++..++..||+|++..    .....+.+.+|+++++.+      .|+||+++
T Consensus         4 ~~g~~~~-~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l------~hp~iv~~   76 (294)
T 4eqm_A            4 MIGKIIN-ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQL------SHQNIVSM   76 (294)
T ss_dssp             CCSSCEE-TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTC------CBTTBCCE
T ss_pred             chhhHhh-ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcC------CCCCCceE
Confidence            4688886 799999999999999999999999999999998743    234456788999999998      78999999


Q ss_pred             cccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCC
Q 013220          104 IDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTID  182 (447)
Q Consensus       104 ~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~  182 (447)
                      ++++..    ....++||||+ +++|.+++...  ..+++..+..++.|++.||+|||++ ||+||||||+||++     
T Consensus        77 ~~~~~~----~~~~~lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~Dlkp~Nil~-----  144 (294)
T 4eqm_A           77 IDVDEE----DDCYYLVMEYIEGPTLSEYIESH--GPLSVDTAINFTNQILDGIKHAHDM-RIVHRDIKPQNILI-----  144 (294)
T ss_dssp             EEEEEC----SSEEEEEEECCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEE-----
T ss_pred             EEeeee----CCeEEEEEeCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEE-----
Confidence            999874    46899999999 88999988754  3589999999999999999999996 99999999999999     


Q ss_pred             CCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCc
Q 013220          183 PSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGN  262 (447)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~  262 (447)
                                                                                         +....++|+|||+
T Consensus       145 -------------------------------------------------------------------~~~~~~kl~Dfg~  157 (294)
T 4eqm_A          145 -------------------------------------------------------------------DSNKTLKIFDFGI  157 (294)
T ss_dssp             -------------------------------------------------------------------CTTSCEEECCCSS
T ss_pred             -------------------------------------------------------------------CCCCCEEEEeCCC
Confidence                                                                               3456799999999


Q ss_pred             ccccccc----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHh-CC
Q 013220          263 ACRANKQ----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI-GK  337 (447)
Q Consensus       263 a~~~~~~----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~-g~  337 (447)
                      +......    ....+||+.|+|||.+.+..++.++|||||||++|+|++|..||...+      .   .....+.+ +.
T Consensus       158 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~------~---~~~~~~~~~~~  228 (294)
T 4eqm_A          158 AKALSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGET------A---VSIAIKHIQDS  228 (294)
T ss_dssp             STTC-------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSC------H---HHHHHHHHSSC
T ss_pred             ccccccccccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC------h---HHHHHHHhhcc
Confidence            9755432    223468999999999999999999999999999999999999997542      1   11111111 11


Q ss_pred             CCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccc
Q 013220          338 MPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~  417 (447)
                      .+..                                   ....+..+++.+.++|.+||+.||.+||+..+.+.+.|...
T Consensus       229 ~~~~-----------------------------------~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~  273 (294)
T 4eqm_A          229 VPNV-----------------------------------TTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSV  273 (294)
T ss_dssp             CCCH-----------------------------------HHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTS
T ss_pred             CCCc-----------------------------------chhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHH
Confidence            1100                                   00123445678999999999999999998888888887765


Q ss_pred             ccC
Q 013220          418 RNS  420 (447)
Q Consensus       418 ~~~  420 (447)
                      ...
T Consensus       274 ~~~  276 (294)
T 4eqm_A          274 LHE  276 (294)
T ss_dssp             SSS
T ss_pred             Hhh
Confidence            443

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=1.7e-42  Score=344.16  Aligned_cols=271  Identities=25%  Similarity=0.344  Sum_probs=187.0

Q ss_pred             ccCccccCCceEEEE-eecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHH-HHHhhcCCCCCcceeeeecc
Q 013220           28 RVGDLFNGGRYIAQR-KLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEV-LSAVADGDPSNEKCVIRLID  105 (447)
Q Consensus        28 ~~g~~~~~~~y~l~~-~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~-l~~l~~~~~~~~~~Iv~~~~  105 (447)
                      .....+. ++|.+.+ .||+|+||+||+|++..+++.||+|++.....    ...|+.. ++.+      .|+||+++++
T Consensus        21 ~~~~~~~-~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~e~~~~~~~~------~h~~i~~~~~   89 (336)
T 3fhr_A           21 PKKYAVT-DDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPK----ARQEVDHHWQAS------GGPHIVCILD   89 (336)
T ss_dssp             CBCSCGG-GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSHH----HHHHHHHHHHHT------TSTTBCCEEE
T ss_pred             CCCcccc-ceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcHH----HHHHHHHHHHhc------CCCChHHHHH
Confidence            3344444 7899966 59999999999999999999999999876543    2333333 3333      8899999999


Q ss_pred             cccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCC
Q 013220          106 HFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       106 ~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~  184 (447)
                      ++......+..+++||||+ +++|.+++.......+++..+..++.||+.||+|||++ ||+||||||+||++...    
T Consensus        90 ~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~-~ivH~dlkp~NIll~~~----  164 (336)
T 3fhr_A           90 VYENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSH-NIAHRDVKPENLLYTSK----  164 (336)
T ss_dssp             EEEEEETTEEEEEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEESCS----
T ss_pred             HHhhccCCCceEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEEec----
Confidence            9887554567899999999 78999998765545699999999999999999999997 99999999999999431    


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                       +....++|+|||++.
T Consensus       165 -----------------------------------------------------------------~~~~~~kl~Dfg~~~  179 (336)
T 3fhr_A          165 -----------------------------------------------------------------EKDAVLKLTDFGFAK  179 (336)
T ss_dssp             -----------------------------------------------------------------STTCCEEECCCTTCE
T ss_pred             -----------------------------------------------------------------CCCceEEEeccccce
Confidence                                                                             224569999999997


Q ss_pred             ccccc-cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhh
Q 013220          265 RANKQ-FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  343 (447)
Q Consensus       265 ~~~~~-~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  343 (447)
                      ..... .....+|+.|+|||++.+..++.++|||||||++|+|++|..||.........      ..+...+..      
T Consensus       180 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~------~~~~~~~~~------  247 (336)
T 3fhr_A          180 ETTQNALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAIS------PGMKRRIRL------  247 (336)
T ss_dssp             EC----------------------CHHHHHHHHHHHHHHHHHHHHSSCCC------------------------------
T ss_pred             eccccccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhh------hhHHHhhhc------
Confidence            55433 23457899999999998888899999999999999999999999765321110      000000000      


Q ss_pred             hCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          344 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                  ............++..+.+||.+||+.||++|||++|+|+||||+...
T Consensus       248 ----------------------------~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~  295 (336)
T 3fhr_A          248 ----------------------------GQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMNHPWINQSM  295 (336)
T ss_dssp             -------------------------------CCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHSHHHHTGG
T ss_pred             ----------------------------cccccCchhhccCCHHHHHHHHHHCCCChhHCcCHHHHhcCccccccc
Confidence                                        000000011134567899999999999999999999999999998754

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=5.4e-42  Score=334.80  Aligned_cols=258  Identities=26%  Similarity=0.426  Sum_probs=206.7

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      ++|++.+.||+|+||+||+|++..+++.||+|+++... .....+.+|+++++.+      .|+||+++++++..    .
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~----~   78 (304)
T 2jam_A            9 KTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKI------KHENIVTLEDIYES----T   78 (304)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHC------CCTTBCCEEEEEEC----S
T ss_pred             ccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhC------CCCCeeehhhhccc----C
Confidence            68999999999999999999999999999999887543 2345688999999999      78999999999875    3


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ...++||||+ +++|.+.+...  ..+++..+..++.|++.||+|||++ ||+||||||+||++...             
T Consensus        79 ~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dikp~NIl~~~~-------------  142 (304)
T 2jam_A           79 THYYLVMQLVSGGELFDRILER--GVYTEKDASLVIQQVLSAVKYLHEN-GIVHRDLKPENLLYLTP-------------  142 (304)
T ss_dssp             SEEEEEECCCCSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCSCCGGGCEESSS-------------
T ss_pred             CEEEEEEEcCCCccHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCCHHHEEEecC-------------
Confidence            6899999999 78999888654  3589999999999999999999997 99999999999999321             


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-ccc
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-FAE  272 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-~~~  272 (447)
                                                                              +....++|+|||.+...... ...
T Consensus       143 --------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~~  166 (304)
T 2jam_A          143 --------------------------------------------------------EENSKIMITDFGLSKMEQNGIMST  166 (304)
T ss_dssp             --------------------------------------------------------STTCCEEBCSCSTTCCCCCBTTHH
T ss_pred             --------------------------------------------------------CCCCCEEEccCCcceecCCCcccc
Confidence                                                                    23567999999998654432 233


Q ss_pred             CCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccch
Q 013220          273 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  352 (447)
Q Consensus       273 ~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  352 (447)
                      ..|++.|+|||.+.+..++.++|||||||++|+|++|..||...+      .......+.+.....+             
T Consensus       167 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~------~~~~~~~i~~~~~~~~-------------  227 (304)
T 2jam_A          167 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEET------ESKLFEKIKEGYYEFE-------------  227 (304)
T ss_dssp             HHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSC------HHHHHHHHHHCCCCCC-------------
T ss_pred             ccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCC------HHHHHHHHHcCCCCCC-------------
Confidence            468999999999998889999999999999999999999997542      2222222211100000             


Q ss_pred             hcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          353 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                               ......++..+.+||.+||+.||++|||++|+|+||||+...
T Consensus       228 -------------------------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~  269 (304)
T 2jam_A          228 -------------------------SPFWDDISESAKDFICHLLEKDPNERYTCEKALSHPWIDGNT  269 (304)
T ss_dssp             -------------------------TTTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTSHHHHSSC
T ss_pred             -------------------------ccccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCccccCCC
Confidence                                     012234567899999999999999999999999999998654

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=9.9e-42  Score=331.92  Aligned_cols=268  Identities=27%  Similarity=0.445  Sum_probs=206.9

Q ss_pred             CccccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceee
Q 013220           23 GYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVI  101 (447)
Q Consensus        23 ~~~~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv  101 (447)
                      .|.++..+...+ ++|++.+.||+|+||+||+|++..++..||+|++.... ...+.+.+|+++++.+      .|+||+
T Consensus         7 ~~~~~~~~~~~~-~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~   79 (302)
T 2j7t_A            7 EYEHVRRDLDPN-EVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATC------DHPYIV   79 (302)
T ss_dssp             ---CCBSSSCGG-GTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHC------CCTTBC
T ss_pred             hhcccccccCCc-cceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcC------CCCCEe
Confidence            455666665554 79999999999999999999999999999999876543 3356788999999998      789999


Q ss_pred             eecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeec
Q 013220          102 RLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVST  180 (447)
Q Consensus       102 ~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~  180 (447)
                      ++++++...    ...++||||+ +++|..++.... ..+++..+..++.|++.||+|||++ ||+||||||+||++   
T Consensus        80 ~~~~~~~~~----~~~~lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dlkp~Nil~---  150 (302)
T 2j7t_A           80 KLLGAYYHD----GKLWIMIEFCPGGAVDAIMLELD-RGLTEPQIQVVCRQMLEALNFLHSK-RIIHRDLKAGNVLM---  150 (302)
T ss_dssp             CEEEEEECC-----CEEEEEECCTTEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSGGGEEE---
T ss_pred             eeeeeeeeC----CeEEEEEEeCCCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHhcC-CcccCCCCHHHEEE---
Confidence            999998753    6899999999 778888775432 4589999999999999999999996 99999999999999   


Q ss_pred             CCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeec
Q 013220          181 IDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDF  260 (447)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Df  260 (447)
                                                                                           +....++|+||
T Consensus       151 ---------------------------------------------------------------------~~~~~~kl~Df  161 (302)
T 2j7t_A          151 ---------------------------------------------------------------------TLEGDIRLADF  161 (302)
T ss_dssp             ---------------------------------------------------------------------CTTSCEEECCC
T ss_pred             ---------------------------------------------------------------------CCCCCEEEEEC
Confidence                                                                                 33567999999


Q ss_pred             Ccccccc---cccccCCCCCCccChHHhh-----cCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHH
Q 013220          261 GNACRAN---KQFAEEIQTRQYRAPEVIL-----RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMM  332 (447)
Q Consensus       261 g~a~~~~---~~~~~~~gt~~y~aPE~l~-----~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~  332 (447)
                      |++....   .......|++.|+|||.+.     +..++.++|||||||++|+|++|..||...+      .......+.
T Consensus       162 g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~------~~~~~~~~~  235 (302)
T 2j7t_A          162 GVSAKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELN------PMRVLLKIA  235 (302)
T ss_dssp             HHHHHHHHHHHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSC------HHHHHHHHH
T ss_pred             CCCccccccccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCC------HHHHHHHHh
Confidence            9875332   1223457899999999984     5568899999999999999999999997542      111111111


Q ss_pred             HHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          333 ELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       333 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                      .  +..+                                     ....+...+..+.+||.+||+.||++|||++|+++|
T Consensus       236 ~--~~~~-------------------------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h  276 (302)
T 2j7t_A          236 K--SDPP-------------------------------------TLLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLEH  276 (302)
T ss_dssp             H--SCCC-------------------------------------CCSSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTTS
T ss_pred             c--cCCc-------------------------------------ccCCccccCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence            0  0000                                     001223446689999999999999999999999999


Q ss_pred             cccccccC
Q 013220          413 PWLSLRNS  420 (447)
Q Consensus       413 p~f~~~~~  420 (447)
                      |||+....
T Consensus       277 ~~~~~~~~  284 (302)
T 2j7t_A          277 PFVSSITS  284 (302)
T ss_dssp             TTTTTCCC
T ss_pred             hHHhhhcc
Confidence            99997654

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=2.8e-41  Score=328.10  Aligned_cols=256  Identities=28%  Similarity=0.437  Sum_probs=206.7

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh----------HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA----------AQFAQAALHEIEVLSAVADGDPSNEKCVIRLID  105 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~----------~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~  105 (447)
                      ++|++.+.||+|+||.||+|++..+++.||+|++...          ....+.+.+|+++++.+.     +|+||+++++
T Consensus        17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~-----~h~~i~~~~~   91 (298)
T 1phk_A           17 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVS-----GHPNIIQLKD   91 (298)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHT-----TCTTBCCEEE
T ss_pred             hccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhc-----CCCCEeeeee
Confidence            7899999999999999999999999999999987543          133457789999999994     5999999999


Q ss_pred             cccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCC
Q 013220          106 HFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       106 ~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~  184 (447)
                      ++..    ....++||||+ +++|.+++...  ..+++..+..++.|++.||+|||++ ||+|+||||+||++       
T Consensus        92 ~~~~----~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~Nil~-------  157 (298)
T 1phk_A           92 TYET----NTFFFLVFDLMKKGELFDYLTEK--VTLSEKETRKIMRALLEVICALHKL-NIVHRDLKPENILL-------  157 (298)
T ss_dssp             EEEC----SSEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEE-------
T ss_pred             eecc----CCeEEEEEeccCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCcceEEE-------
Confidence            9874    46899999999 78999988754  3589999999999999999999996 99999999999999       


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                       +..+.++|+|||.+.
T Consensus       158 -----------------------------------------------------------------~~~~~~kl~dfg~~~  172 (298)
T 1phk_A          158 -----------------------------------------------------------------DDDMNIKLTDFGFSC  172 (298)
T ss_dssp             -----------------------------------------------------------------CTTCCEEECCCTTCE
T ss_pred             -----------------------------------------------------------------cCCCcEEEecccchh
Confidence                                                                             345679999999997


Q ss_pred             cccc--ccccCCCCCCccChHHhh------cCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhC
Q 013220          265 RANK--QFAEEIQTRQYRAPEVIL------RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIG  336 (447)
Q Consensus       265 ~~~~--~~~~~~gt~~y~aPE~l~------~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g  336 (447)
                      ....  ......+++.|+|||++.      ...++.++|||||||++|+|++|..||...+      .......+.....
T Consensus       173 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~------~~~~~~~~~~~~~  246 (298)
T 1phk_A          173 QLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRK------QMLMLRMIMSGNY  246 (298)
T ss_dssp             ECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHTCC
T ss_pred             hcCCCcccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCcc------HHHHHHHHhcCCc
Confidence            6543  234457899999999986      3457899999999999999999999997542      2222222211100


Q ss_pred             CCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccc
Q 013220          337 KMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  416 (447)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~  416 (447)
                      ..+.                                      ......+..+.+||.+||+.||++|||++|+|+||||+
T Consensus       247 ~~~~--------------------------------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~~~  288 (298)
T 1phk_A          247 QFGS--------------------------------------PEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPFFQ  288 (298)
T ss_dssp             CCCT--------------------------------------TTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGC
T ss_pred             ccCc--------------------------------------ccccccCHHHHHHHHHHccCCcccCCCHHHHHhChHhh
Confidence            0000                                      01123466899999999999999999999999999999


Q ss_pred             ccc
Q 013220          417 LRN  419 (447)
Q Consensus       417 ~~~  419 (447)
                      ...
T Consensus       289 ~~~  291 (298)
T 1phk_A          289 QYV  291 (298)
T ss_dssp             TTC
T ss_pred             hcc
Confidence            654

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=2.4e-41  Score=339.89  Aligned_cols=253  Identities=29%  Similarity=0.481  Sum_probs=204.1

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---------HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---------QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDH  106 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---------~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~  106 (447)
                      ++|.+.+.||+|+||.||+|++..+++.||||++....         ...+.+.+|+.+++.+.     +|+||++++++
T Consensus        94 ~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-----~hp~iv~~~~~  168 (365)
T 2y7j_A           94 QKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVA-----GHPHIITLIDS  168 (365)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHT-----TCTTBCCEEEE
T ss_pred             hhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhc-----CCCCEeEEEEE
Confidence            68999999999999999999999899999999876432         22456788999999985     68999999999


Q ss_pred             ccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCC
Q 013220          107 FKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK  185 (447)
Q Consensus       107 ~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~  185 (447)
                      +...    ...++||||+ +++|.+.+...  ..+++..+..++.||+.||.|||+. ||+|+||||+||++        
T Consensus       169 ~~~~----~~~~lv~e~~~g~~L~~~l~~~--~~l~~~~~~~i~~qi~~~L~~LH~~-gi~H~Dlkp~NIl~--------  233 (365)
T 2y7j_A          169 YESS----SFMFLVFDLMRKGELFDYLTEK--VALSEKETRSIMRSLLEAVSFLHAN-NIVHRDLKPENILL--------  233 (365)
T ss_dssp             EEBS----SEEEEEECCCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEE--------
T ss_pred             EeeC----CEEEEEEEeCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEE--------
Confidence            8753    6899999999 78999888654  3589999999999999999999996 99999999999999        


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccc
Q 013220          186 DPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR  265 (447)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~  265 (447)
                                                                                      +.++.++|+|||++..
T Consensus       234 ----------------------------------------------------------------~~~~~ikl~DfG~~~~  249 (365)
T 2y7j_A          234 ----------------------------------------------------------------DDNMQIRLSDFGFSCH  249 (365)
T ss_dssp             ----------------------------------------------------------------CTTCCEEECCCTTCEE
T ss_pred             ----------------------------------------------------------------CCCCCEEEEecCcccc
Confidence                                                                            4467799999999876


Q ss_pred             ccc--ccccCCCCCCccChHHhhcC------CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCC
Q 013220          266 ANK--QFAEEIQTRQYRAPEVILRA------GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK  337 (447)
Q Consensus       266 ~~~--~~~~~~gt~~y~aPE~l~~~------~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~  337 (447)
                      ...  .....+||+.|+|||++.+.      .++.++|||||||++|+|++|..||...+      .......+......
T Consensus       250 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~------~~~~~~~i~~~~~~  323 (365)
T 2y7j_A          250 LEPGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRR------QILMLRMIMEGQYQ  323 (365)
T ss_dssp             CCTTCCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHTCCC
T ss_pred             cCCCcccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCC------HHHHHHHHHhCCCC
Confidence            543  23446799999999999743      57889999999999999999999997542      22222222211000


Q ss_pred             CCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccc
Q 013220          338 MPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  416 (447)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~  416 (447)
                      .+...                                      ....+..+.+||.+||+.||++|||++|+|+||||+
T Consensus       324 ~~~~~--------------------------------------~~~~~~~~~~li~~~L~~dP~~Rps~~ell~hp~f~  364 (365)
T 2y7j_A          324 FSSPE--------------------------------------WDDRSSTVKDLISRLLQVDPEARLTAEQALQHPFFE  364 (365)
T ss_dssp             CCHHH--------------------------------------HSSSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGC
T ss_pred             CCCcc--------------------------------------cccCCHHHHHHHHHHcCCChhHCcCHHHHhcCcccC
Confidence            00000                                      012356789999999999999999999999999997

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=6.3e-42  Score=328.76  Aligned_cols=254  Identities=24%  Similarity=0.326  Sum_probs=204.4

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      ++|++.+.||+|+||.||+|++..+++.||+|++....  ...+.+.+|+++++.+      .|+||+++++++..    
T Consensus         7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~----   76 (276)
T 2yex_A            7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKML------NHENVVKFYGHRRE----   76 (276)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTC------CCTTBCCEEEEEEE----
T ss_pred             cceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhc------CCCCceeeeeEEEc----
Confidence            68999999999999999999999999999999886443  3356788999999998      78999999998875    


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      +...++||||+ +++|.+.+...  ..+++..+..++.|++.||+|||++ ||+|+||||+||++               
T Consensus        77 ~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dl~p~Nil~---------------  138 (276)
T 2yex_A           77 GNIQYLFLEYCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYLHGI-GITHRDIKPENLLL---------------  138 (276)
T ss_dssp             TTEEEEEEECCTTEEGGGGSBTT--TBCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEE---------------
T ss_pred             CCEEEEEEEecCCCcHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCChHHEEE---------------
Confidence            36899999999 77888776533  3489999999999999999999996 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc----
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----  268 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~----  268 (447)
                                                                               +....++|+|||.+.....    
T Consensus       139 ---------------------------------------------------------~~~~~~kl~dfg~~~~~~~~~~~  161 (276)
T 2yex_A          139 ---------------------------------------------------------DERDNLKISDFGLATVFRYNNRE  161 (276)
T ss_dssp             ---------------------------------------------------------CTTCCEEECCCTTCEECEETTEE
T ss_pred             ---------------------------------------------------------ccCCCEEEeeCCCccccCCCcch
Confidence                                                                     3356799999999865432    


Q ss_pred             -ccccCCCCCCccChHHhhcCCC-CccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCC
Q 013220          269 -QFAEEIQTRQYRAPEVILRAGY-SFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  346 (447)
Q Consensus       269 -~~~~~~gt~~y~aPE~l~~~~~-~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  346 (447)
                       ......|++.|+|||.+.+..+ +.++|||||||++|+|++|..||.....     ..........   ...       
T Consensus       162 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-----~~~~~~~~~~---~~~-------  226 (276)
T 2yex_A          162 RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSD-----SCQEYSDWKE---KKT-------  226 (276)
T ss_dssp             CCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCT-----TSHHHHHHHT---TCT-------
T ss_pred             hcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCch-----HHHHHHHhhh---ccc-------
Confidence             1234578999999999987765 7899999999999999999999976531     1111111100   000       


Q ss_pred             CCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          347 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                    ........+..+.+||.+||+.||++|||++|+++||||+...
T Consensus       227 ------------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~~~~~  269 (276)
T 2yex_A          227 ------------------------------YLNPWKKIDSAPLALLHKILVENPSARITIPDIKKDRWYNKPL  269 (276)
T ss_dssp             ------------------------------TSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTTTTCCC
T ss_pred             ------------------------------ccCchhhcCHHHHHHHHHHCCCCchhCCCHHHHhcCccccChh
Confidence                                          0001123466889999999999999999999999999998754

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=8.4e-42  Score=341.81  Aligned_cols=257  Identities=24%  Similarity=0.357  Sum_probs=206.7

Q ss_pred             CCceEEEEeecccCceEEEEEEeC---CCCeEEEEEEechhH-----HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDT---RTSSYVALKIQKSAA-----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDH  106 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~---~~~~~vaiK~~~~~~-----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~  106 (447)
                      .++|++.+.||+|+||+||+|++.   .+++.||||+++...     .....+.+|+++++.+.     +|+||++++++
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~~iv~~~~~  127 (355)
T 1vzo_A           53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIR-----QSPFLVTLHYA  127 (355)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHH-----TCTTBCCEEEE
T ss_pred             ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHcc-----CCCceeEEEEE
Confidence            478999999999999999999884   578999999876432     23456778999999996     68999999998


Q ss_pred             ccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCC
Q 013220          107 FKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK  185 (447)
Q Consensus       107 ~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~  185 (447)
                      +...    ...++||||+ +++|.+++...  ..+++..+..++.||+.||+|||++ ||+||||||+||++        
T Consensus       128 ~~~~----~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-~ivH~Dlkp~NIll--------  192 (355)
T 1vzo_A          128 FQTE----TKLHLILDYINGGELFTHLSQR--ERFTEHEVQIYVGEIVLALEHLHKL-GIIYRDIKLENILL--------  192 (355)
T ss_dssp             EEET----TEEEEEECCCCSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEE--------
T ss_pred             EeeC----ceEEEEeecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEE--------
Confidence            8753    6899999999 88999988754  3589999999999999999999996 99999999999999        


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccc
Q 013220          186 DPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR  265 (447)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~  265 (447)
                                                                                      +..+.+||+|||++..
T Consensus       193 ----------------------------------------------------------------~~~~~~kl~DfG~a~~  208 (355)
T 1vzo_A          193 ----------------------------------------------------------------DSNGHVVLTDFGLSKE  208 (355)
T ss_dssp             ----------------------------------------------------------------CTTSCEEESCSSEEEE
T ss_pred             ----------------------------------------------------------------CCCCcEEEeeCCCCee
Confidence                                                                            4456799999999975


Q ss_pred             ccc----ccccCCCCCCccChHHhhcC--CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCC
Q 013220          266 ANK----QFAEEIQTRQYRAPEVILRA--GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMP  339 (447)
Q Consensus       266 ~~~----~~~~~~gt~~y~aPE~l~~~--~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~  339 (447)
                      ...    .....+||+.|+|||++.+.  .++.++|||||||++|+|++|..||.......   ..   ..+.       
T Consensus       209 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~---~~---~~~~-------  275 (355)
T 1vzo_A          209 FVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKN---SQ---AEIS-------  275 (355)
T ss_dssp             CCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCC---CH---HHHH-------
T ss_pred             cccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccc---hH---HHHH-------
Confidence            432    22335799999999999863  47899999999999999999999997553211   11   1111       


Q ss_pred             HHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC-----ChHHHhcCcc
Q 013220          340 RKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPW  414 (447)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp-----ta~elL~hp~  414 (447)
                                                     ..+......++...+..+.+||.+||+.||++||     |++|+++|||
T Consensus       276 -------------------------------~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~~  324 (355)
T 1vzo_A          276 -------------------------------RRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLF  324 (355)
T ss_dssp             -------------------------------HHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGG
T ss_pred             -------------------------------HHHhccCCCCCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCcc
Confidence                                           1111222334556677899999999999999999     9999999999


Q ss_pred             ccccc
Q 013220          415 LSLRN  419 (447)
Q Consensus       415 f~~~~  419 (447)
                      |+..+
T Consensus       325 f~~~~  329 (355)
T 1vzo_A          325 FQKIN  329 (355)
T ss_dssp             GTTCC
T ss_pred             hhcCC
Confidence            99754

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=1e-41  Score=330.84  Aligned_cols=258  Identities=26%  Similarity=0.407  Sum_probs=199.9

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC----
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG----  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~----  111 (447)
                      ++|++.+.||+|+||+||+|++..+++.||+|++.......+.+.+|+++++.+      .|+||+++++++....    
T Consensus         6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~~~~~~~   79 (303)
T 1zy4_A            6 SDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASL------NHQYVVRYYAAWLERRNFVK   79 (303)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEEHHHHHHHHHHHHHHTTC------CCTTBCCEEEEEEECCCCCC
T ss_pred             ccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEeccHHHHHHHHHHHHHHHhc------CchHHHHHHHHHHhhcchhh
Confidence            689999999999999999999999999999999877666677889999999998      7899999999876421    


Q ss_pred             -----CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCC
Q 013220          112 -----PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK  185 (447)
Q Consensus       112 -----~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~  185 (447)
                           ......++||||+ +++|.+++.... ..+++..+..++.|++.||+|||++ ||+||||||+||++        
T Consensus        80 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~-~i~H~dlkp~Nil~--------  149 (303)
T 1zy4_A           80 PMTAVKKKSTLFIQMEYCENGTLYDLIHSEN-LNQQRDEYWRLFRQILEALSYIHSQ-GIIHRDLKPMNIFI--------  149 (303)
T ss_dssp             ------CEEEEEEEEECCCSCBHHHHHHHSC-GGGCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEE--------
T ss_pred             hhcccccCCceEEEEecCCCCCHHHhhhccc-cccchHHHHHHHHHHHHHHHHHHhC-CeecccCCHHhEEE--------
Confidence                 2356899999999 789999886532 3477889999999999999999997 99999999999999        


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccc
Q 013220          186 DPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR  265 (447)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~  265 (447)
                                                                                      +.++.++|+|||.+..
T Consensus       150 ----------------------------------------------------------------~~~~~~kl~dfg~~~~  165 (303)
T 1zy4_A          150 ----------------------------------------------------------------DESRNVKIGDFGLAKN  165 (303)
T ss_dssp             ----------------------------------------------------------------CTTSCEEECCCCCCSC
T ss_pred             ----------------------------------------------------------------cCCCCEEEeeCcchhh
Confidence                                                                            3456799999999865


Q ss_pred             ccc-----------------ccccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHH
Q 013220          266 ANK-----------------QFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDH  327 (447)
Q Consensus       266 ~~~-----------------~~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~  327 (447)
                      ...                 ......|++.|+|||.+.+. .++.++|||||||++|+|++   ||...        ...
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~--------~~~  234 (303)
T 1zy4_A          166 VHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTG--------MER  234 (303)
T ss_dssp             TTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSH--------HHH
T ss_pred             cccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCc--------hhH
Confidence            432                 12334689999999999865 68999999999999999997   55321        111


Q ss_pred             HHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChH
Q 013220          328 LALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQ  407 (447)
Q Consensus       328 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~  407 (447)
                      ......+.....                                   .-...++...+..+.+||.+||+.||.+|||++
T Consensus       235 ~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~  279 (303)
T 1zy4_A          235 VNILKKLRSVSI-----------------------------------EFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGAR  279 (303)
T ss_dssp             HHHHHHHHSTTC-----------------------------------CCCTTCCTTTSHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             HHHHHhcccccc-----------------------------------ccCccccccchHHHHHHHHHHHhcCcccCcCHH
Confidence            111111110000                                   000113344567889999999999999999999


Q ss_pred             HHhcCccccccc
Q 013220          408 QCLQHPWLSLRN  419 (447)
Q Consensus       408 elL~hp~f~~~~  419 (447)
                      ++|+||||+...
T Consensus       280 ~ll~h~~~~~~~  291 (303)
T 1zy4_A          280 TLLNSGWLPVKH  291 (303)
T ss_dssp             HHHHSSCSCCCC
T ss_pred             HHhCCCCcCCCC
Confidence            999999998643

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.8e-41  Score=330.84  Aligned_cols=258  Identities=29%  Similarity=0.432  Sum_probs=204.5

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      .++|++.+.||+|+||+||+|.+..+++.||+|++.... ..+.+.+|+++++.+      .|+||+++++++...    
T Consensus        28 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~~----   96 (314)
T 3com_A           28 EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES-DLQEIIKEISIMQQC------DSPHVVKYYGSYFKN----   96 (314)
T ss_dssp             --CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS-CCHHHHHHHHHHHTC------CCTTBCCEEEEEEET----
T ss_pred             hhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH-HHHHHHHHHHHHHhC------CCCCCccEEEEEEeC----
Confidence            378999999999999999999999999999999887653 246788999999998      789999999998753    


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ...++||||+ +++|.+++... ...+++..+..++.|++.||+|||+. ||+|+||||+||++                
T Consensus        97 ~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lH~~-~i~H~dl~p~Nil~----------------  158 (314)
T 3com_A           97 TDLWIVMEYCGAGSVSDIIRLR-NKTLTEDEIATILQSTLKGLEYLHFM-RKIHRDIKAGNILL----------------  158 (314)
T ss_dssp             TEEEEEEECCTTEEHHHHHHHH-TCCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEE----------------
T ss_pred             CEEEEEeecCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhC-CCcCCCcCHHHEEE----------------
Confidence            6899999999 77999888643 24689999999999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---c
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---F  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~  270 (447)
                                                                              +..+.++|+|||.+......   .
T Consensus       159 --------------------------------------------------------~~~~~~kl~dfg~~~~~~~~~~~~  182 (314)
T 3com_A          159 --------------------------------------------------------NTEGHAKLADFGVAGQLTDTMAKR  182 (314)
T ss_dssp             --------------------------------------------------------CTTCCEEECCCTTCEECBTTBSCB
T ss_pred             --------------------------------------------------------CCCCCEEEeecccchhhhhhcccc
Confidence                                                                    34567999999999755432   2


Q ss_pred             ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          271 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      ....|++.|+|||.+.+..++.++|||||||++|+|++|..||....      ....   ...+....+.          
T Consensus       183 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~------~~~~---~~~~~~~~~~----------  243 (314)
T 3com_A          183 NTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIH------PMRA---IFMIPTNPPP----------  243 (314)
T ss_dssp             CCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSC------HHHH---HHHHHHSCCC----------
T ss_pred             CccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCC------hHHH---HHHHhcCCCc----------
Confidence            34578999999999998889999999999999999999999996542      1111   1111000000          


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCCc
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR  422 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~~  422 (447)
                                                ....+...+..+.+||.+||+.||.+|||+.++|+||||+......
T Consensus       244 --------------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~~~~~~~~~~~~  289 (314)
T 3com_A          244 --------------------------TFRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQHPFVRSAKGVS  289 (314)
T ss_dssp             --------------------------CCSSGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTTSHHHHTCCCGG
T ss_pred             --------------------------ccCCcccCCHHHHHHHHHHccCChhhCcCHHHHHhCHHHhcCCcch
Confidence                                      0011233466899999999999999999999999999999765443

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=1.3e-41  Score=335.07  Aligned_cols=258  Identities=31%  Similarity=0.474  Sum_probs=201.0

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---------HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---------QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDH  106 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---------~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~  106 (447)
                      ++|++.+.||+|+||.||+|++..+++.||||++....         .....+.+|+++++.+      .|+||++++++
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~   83 (322)
T 2ycf_A           10 DEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKL------NHPCIIKIKNF   83 (322)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHC------CCTTBCCEEEE
T ss_pred             hceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhC------CCCCCceEeeE
Confidence            68999999999999999999999999999999876432         1234578899999999      78999999998


Q ss_pred             ccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCC
Q 013220          107 FKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK  185 (447)
Q Consensus       107 ~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~  185 (447)
                      +...     ..++||||+ +++|.+.+...  ..+++..+..++.||+.||+|||++ ||+||||||+||++...     
T Consensus        84 ~~~~-----~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~dlkp~NIl~~~~-----  150 (322)
T 2ycf_A           84 FDAE-----DYYIVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLLAVQYLHEN-GIIHRDLKPENVLLSSQ-----  150 (322)
T ss_dssp             EESS-----SEEEEEECCTTEETHHHHSTT--CCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEESSS-----
T ss_pred             EcCC-----ceEEEEecCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCCHHHEEEecC-----
Confidence            8642     489999999 78998887643  4589999999999999999999997 99999999999999431     


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccc
Q 013220          186 DPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR  265 (447)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~  265 (447)
                                                                                      .....++|+|||++..
T Consensus       151 ----------------------------------------------------------------~~~~~~kl~Dfg~~~~  166 (322)
T 2ycf_A          151 ----------------------------------------------------------------EEDCLIKITDFGHSKI  166 (322)
T ss_dssp             ----------------------------------------------------------------SSSCCEEECCCTTCEE
T ss_pred             ----------------------------------------------------------------CCCCeEEEccCcccee
Confidence                                                                            2234699999999976


Q ss_pred             ccccc--ccCCCCCCccChHHhh---cCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCH
Q 013220          266 ANKQF--AEEIQTRQYRAPEVIL---RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  340 (447)
Q Consensus       266 ~~~~~--~~~~gt~~y~aPE~l~---~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~  340 (447)
                      .....  ....||+.|+|||++.   ...++.++|||||||++|+|++|..||......     ......+..  +..+ 
T Consensus       167 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-----~~~~~~~~~--~~~~-  238 (322)
T 2ycf_A          167 LGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQ-----VSLKDQITS--GKYN-  238 (322)
T ss_dssp             CCCCHHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCS-----SCHHHHHHH--TCCC-
T ss_pred             cccccccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchH-----HHHHHHHHh--Cccc-
Confidence            54332  2346899999999985   356889999999999999999999999765321     111111111  0000 


Q ss_pred             HhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          341 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                  ....       .....+..+.+||.+||+.||++|||++++|+||||+...
T Consensus       239 ----------------------------~~~~-------~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~h~~~~~~~  282 (322)
T 2ycf_A          239 ----------------------------FIPE-------VWAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQDED  282 (322)
T ss_dssp             ----------------------------CCHH-------HHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGCCHH
T ss_pred             ----------------------------cCch-------hhhhcCHHHHHHHHHHcccCHhhCCCHHHHhhCcCcCCHH
Confidence                                        0000       0123466889999999999999999999999999998753

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=3e-41  Score=324.80  Aligned_cols=257  Identities=23%  Similarity=0.347  Sum_probs=207.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.+.||+|+||+||+|++..+++.||+|++...   ....+.+.+|+++++.+      .|+||+++++++...  
T Consensus         6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~~--   77 (279)
T 2w5a_A            6 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLREL------KHPNIVRYYDRIIDR--   77 (279)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHC------CCTTBCCEEEEEEEG--
T ss_pred             hheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhc------CCCCCCeEEEEEecC--
Confidence            6899999999999999999999999999999987643   23456788999999999      789999999987643  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhhCC-----cccccCCCCCeEeeecCCCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSR--YKGLELNKVREICKYILTGLDYLHRELG-----IIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~--~~~l~~~~~~~i~~qil~aL~~lH~~~g-----IiH~Dikp~Nill~~~~~~~  184 (447)
                      .....++||||+ +++|.+++....  ...+++..+..++.|++.||+|||++ |     |+||||||+||++       
T Consensus        78 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~-~~~~~~ivH~dl~p~NIl~-------  149 (279)
T 2w5a_A           78 TNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRR-SDGGHTVLHRDLKPANVFL-------  149 (279)
T ss_dssp             GGTEEEEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH-C------CCCCCSGGGEEE-------
T ss_pred             CCceEEEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcc-cCCCCeeEEeccchhhEEE-------
Confidence            346899999999 779999886533  23489999999999999999999997 8     9999999999999       


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                       +....++|+|||.+.
T Consensus       150 -----------------------------------------------------------------~~~~~~kl~dfg~~~  164 (279)
T 2w5a_A          150 -----------------------------------------------------------------DGKQNVKLGDFGLAR  164 (279)
T ss_dssp             -----------------------------------------------------------------CSSSCEEECCCCHHH
T ss_pred             -----------------------------------------------------------------cCCCCEEEecCchhe
Confidence                                                                             345679999999987


Q ss_pred             cccccc---ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          265 RANKQF---AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       265 ~~~~~~---~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                      ......   ....|++.|+|||.+.+..++.++|||||||++|+|++|..||...+      .......+..  +..   
T Consensus       165 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~------~~~~~~~i~~--~~~---  233 (279)
T 2w5a_A          165 ILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFS------QKELAGKIRE--GKF---  233 (279)
T ss_dssp             HC---CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHH--TCC---
T ss_pred             eeccccccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccC------HHHHHHHHhh--ccc---
Confidence            554321   23468999999999999889999999999999999999999997542      1111111111  000   


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccC
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~  420 (447)
                                                          ..++...+..+.+||.+||+.||++|||++|+|+|+|+.+...
T Consensus       234 ------------------------------------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~~~~~~~  276 (279)
T 2w5a_A          234 ------------------------------------RRIPYRYSDELNEIITRMLNLKDYHRPSVEEILENPLILEHHH  276 (279)
T ss_dssp             ------------------------------------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTCCGGGS
T ss_pred             ------------------------------------ccCCcccCHHHHHHHHHHcCCCcccCCCHHHHHhChhhhhhcc
Confidence                                                1133445678999999999999999999999999999997654

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=3.2e-41  Score=333.55  Aligned_cols=263  Identities=20%  Similarity=0.253  Sum_probs=203.6

Q ss_pred             cCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           29 VGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        29 ~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      .|.++.+++|++.+.||+|+||+||+|++..+++.||||++..... .+.+.+|+++++.+.     +|+||+++++++.
T Consensus         2 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~E~~~l~~l~-----~h~~i~~~~~~~~   75 (330)
T 2izr_A            2 MGVLMVGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR-APQLHLEYRFYKQLG-----SGDGIPQVYYFGP   75 (330)
T ss_dssp             --CCEETTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS-SCCHHHHHHHHHHHC-----SCTTSCCEEEEEE
T ss_pred             CceEEEcCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc-hHHHHHHHHHHHHhh-----CCCCCCEEEEEEe
Confidence            3566667899999999999999999999999999999998875532 456889999999995     7899999999887


Q ss_pred             ccCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          109 HAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                      .    +...++||||++++|.+++... ...+++..+..++.|++.||+|||++ ||+||||||+||++.....      
T Consensus        76 ~----~~~~~lv~e~~~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~-~iiHrDlkp~Nill~~~~~------  143 (330)
T 2izr_A           76 C----GKYNAMVLELLGPSLEDLFDLC-DRTFSLKTVLMIAIQLISRMEYVHSK-NLIYRDVKPENFLIGRPGN------  143 (330)
T ss_dssp             E----TTEEEEEEECCCCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEECCGGG------
T ss_pred             c----CCccEEEEEeCCCCHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCHHHeeeccCCC------
Confidence            5    3689999999999999988754 24699999999999999999999997 9999999999999943100      


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                   .....++|+|||++.....
T Consensus       144 -------------------------------------------------------------~~~~~~kl~DFg~a~~~~~  162 (330)
T 2izr_A          144 -------------------------------------------------------------KTQQVIHIIDFALAKEYID  162 (330)
T ss_dssp             -------------------------------------------------------------TCTTSEEECCCTTCEESBC
T ss_pred             -------------------------------------------------------------CCCceEEEEEcccceeeec
Confidence                                                                         1122399999999976433


Q ss_pred             cc----------ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCC
Q 013220          269 QF----------AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKM  338 (447)
Q Consensus       269 ~~----------~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~  338 (447)
                      ..          ...+||+.|+|||++.+..++.++|||||||++|+|++|..||...+..   ........+.......
T Consensus       163 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~---~~~~~~~~i~~~~~~~  239 (330)
T 2izr_A          163 PETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD---TLKERYQKIGDTKRAT  239 (330)
T ss_dssp             TTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCS---SHHHHHHHHHHHHHHS
T ss_pred             CCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccc---cHHHHHHHHHhhhccC
Confidence            21          3457899999999999999999999999999999999999999865311   1111111111110000


Q ss_pred             CHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          339 PRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                      +..                               .      .....+ ++.+||..||+.||.+||+++++++
T Consensus       240 ~~~-------------------------------~------~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~  274 (330)
T 2izr_A          240 PIE-------------------------------V------LCENFP-EMATYLRYVRRLDFFEKPDYDYLRK  274 (330)
T ss_dssp             CHH-------------------------------H------HTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHH
T ss_pred             CHH-------------------------------H------HhccCh-HHHHHHHHHHhCCCCCCCCHHHHHH
Confidence            000                               0      011234 8999999999999999999988875

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=6.1e-41  Score=328.27  Aligned_cols=250  Identities=22%  Similarity=0.282  Sum_probs=202.9

Q ss_pred             ccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEech-hHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           33 FNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKS-AAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        33 ~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~-~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      +..++|++.++||+|+||+||+|++..+++.||+|.+.. +....+.+.+|+++++.+      .|+||+++++++... 
T Consensus         7 ~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~~~~~~~-   79 (310)
T 3s95_A            7 FRPSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCL------EHPNVLKFIGVLYKD-   79 (310)
T ss_dssp             ECGGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTC------CCTTBCCEEEEEEET-
T ss_pred             eChhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhC------CCcCcccEEEEEecC-
Confidence            445899999999999999999999999999999997644 345567889999999999      799999999998853 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                         ...++||||+ +++|.+++.... ..+++..+..++.|++.||+|||++ ||+||||||+||++             
T Consensus        80 ---~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~-~ivH~dlkp~Nil~-------------  141 (310)
T 3s95_A           80 ---KRLNFITEYIKGGTLRGIIKSMD-SQYPWSQRVSFAKDIASGMAYLHSM-NIIHRDLNSHNCLV-------------  141 (310)
T ss_dssp             ---TEEEEEEECCTTCBHHHHHHHCC-TTSCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSTTSEEE-------------
T ss_pred             ---CeeEEEEEecCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhC-CccCCCCCcCeEEE-------------
Confidence               6899999999 889999887532 4589999999999999999999997 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF  270 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~  270 (447)
                                                                                 +....+||+|||.+.......
T Consensus       142 -----------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~  162 (310)
T 3s95_A          142 -----------------------------------------------------------RENKNVVVADFGLARLMVDEK  162 (310)
T ss_dssp             -----------------------------------------------------------CTTSCEEECCCTTCEECC---
T ss_pred             -----------------------------------------------------------CCCCCEEEeecccceeccccc
Confidence                                                                       446679999999997543221


Q ss_pred             c-----------------cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHH
Q 013220          271 A-----------------EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMME  333 (447)
Q Consensus       271 ~-----------------~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~  333 (447)
                      .                 ..+||+.|+|||.+.+..++.++|||||||++|+|++|..||.............       
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~-------  235 (310)
T 3s95_A          163 TQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLN-------  235 (310)
T ss_dssp             -----------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBC-------
T ss_pred             ccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhh-------
Confidence            1                 3478999999999999999999999999999999999999987653211100000       


Q ss_pred             HhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          334 LIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       334 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                          .....  ....+...++.+.+||.+||+.||++|||++++++
T Consensus       236 ------------------------------------~~~~~--~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~  275 (310)
T 3s95_A          236 ------------------------------------VRGFL--DRYCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEH  275 (310)
T ss_dssp             ------------------------------------HHHHH--HHTCCTTCCTTHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ------------------------------------hhccc--cccCCCCCCHHHHHHHHHHccCChhhCcCHHHHHH
Confidence                                                00000  01133445668899999999999999999999987

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=4.4e-41  Score=327.99  Aligned_cols=254  Identities=30%  Similarity=0.442  Sum_probs=208.4

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      .++|++.+.||+|+||+||+|++..+++.||+|++....  ...+.+.+|+++++.+      .|+||+++++++...  
T Consensus        21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~~--   92 (303)
T 3a7i_A           21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQC------DSPYVTKYYGSYLKD--   92 (303)
T ss_dssp             GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHC------CCTTBCCEEEEEEET--
T ss_pred             HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhC------CCCCEeEEEEEEecC--
Confidence            367999999999999999999999999999999886542  3356788999999998      789999999998753  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                        ...++||||+ +++|.+++..   ..+++..+..++.|++.||+|||++ ||+|+||||+||++              
T Consensus        93 --~~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~Nil~--------------  152 (303)
T 3a7i_A           93 --TKLWIIMEYLGGGSALDLLEP---GPLDETQIATILREILKGLDYLHSE-KKIHRDIKAANVLL--------------  152 (303)
T ss_dssp             --TEEEEEEECCTTEEHHHHHTT---SCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEE--------------
T ss_pred             --CeEEEEEEeCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC-CCccCCCChheEEE--------------
Confidence              6899999999 7789888753   4589999999999999999999996 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                +..+.++|+|||.+......  
T Consensus       153 ----------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~  174 (303)
T 3a7i_A          153 ----------------------------------------------------------SEHGEVKLADFGVAGQLTDTQI  174 (303)
T ss_dssp             ----------------------------------------------------------CTTSCEEECCCTTCEECBTTBC
T ss_pred             ----------------------------------------------------------CCCCCEEEeecccceecCcccc
Confidence                                                                      34567999999999755432  


Q ss_pred             -cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          270 -FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       270 -~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                       .....|++.|+|||.+.+..++.++|||||||++|+|++|..||....      .......+.+  +            
T Consensus       175 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~------~~~~~~~~~~--~------------  234 (303)
T 3a7i_A          175 KRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELH------PMKVLFLIPK--N------------  234 (303)
T ss_dssp             CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC------HHHHHHHHHH--S------------
T ss_pred             ccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcC------HHHHHHHhhc--C------------
Confidence             234578999999999998889999999999999999999999996542      1111111100  0            


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                                                 ....++...+..+.+||.+||+.||++|||+.|+|+||||......
T Consensus       235 ---------------------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~~~~~~~~~  280 (303)
T 3a7i_A          235 ---------------------------NPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFILRNAKK  280 (303)
T ss_dssp             ---------------------------CCCCCCSSCCHHHHHHHHHHCCSSGGGSCCHHHHTTCHHHHHHCCC
T ss_pred             ---------------------------CCCCCccccCHHHHHHHHHHcCCChhhCcCHHHHhhChhhhcCCCc
Confidence                                       0111233456689999999999999999999999999999865443

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=8.9e-41  Score=324.29  Aligned_cols=263  Identities=17%  Similarity=0.209  Sum_probs=204.3

Q ss_pred             CccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           30 GDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        30 g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      |++++ ++|++.+.||+|+||+||+|++..+++.||+|++.... ....+.+|+++++.+.     +|++|+++++++..
T Consensus         5 ~~~~~-~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~e~~~~~~l~-----~~~~i~~~~~~~~~   77 (298)
T 1csn_A            5 NNVVG-VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS-DAPQLRDEYRTYKLLA-----GCTGIPNVYYFGQE   77 (298)
T ss_dssp             -CEET-TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT-TSCCHHHHHHHHHHTT-----TCTTCCCEEEEEEE
T ss_pred             Ccccc-cceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC-ccHHHHHHHHHHHHHh-----cCCCCCeEEeecCC
Confidence            55664 79999999999999999999999999999999876543 2456888999999985     67788888887764


Q ss_pred             cCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          110 AGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                          +...++||||++++|.+++.... ..+++..+..++.|++.||+|||++ ||+||||||+||++.....       
T Consensus        78 ----~~~~~lv~e~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~-~ivH~Dlkp~NIl~~~~~~-------  144 (298)
T 1csn_A           78 ----GLHNVLVIDLLGPSLEDLLDLCG-RKFSVKTVAMAAKQMLARVQSIHEK-SLVYRDIKPDNFLIGRPNS-------  144 (298)
T ss_dssp             ----TTEEEEEEECCCCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHTT-TEECCCCCGGGEEECCSSS-------
T ss_pred             ----CceeEEEEEecCCCHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHhC-CEecCCCCHHHEEeccCCC-------
Confidence                46899999999999999987542 4589999999999999999999996 9999999999999944210       


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                  .....++|+|||++......
T Consensus       145 ------------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~  164 (298)
T 1csn_A          145 ------------------------------------------------------------KNANMIYVVDFGMVKFYRDP  164 (298)
T ss_dssp             ------------------------------------------------------------TTTTCEEECCCTTCEESBCT
T ss_pred             ------------------------------------------------------------CCCCeEEEEECccccccccc
Confidence                                                                        12345999999999755432


Q ss_pred             ----------cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCC
Q 013220          270 ----------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMP  339 (447)
Q Consensus       270 ----------~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~  339 (447)
                                .....||+.|+|||.+.+..++.++|||||||++|+|++|..||...+..   ........+.......+
T Consensus       165 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~---~~~~~~~~~~~~~~~~~  241 (298)
T 1csn_A          165 VTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAA---TNKQKYERIGEKKQSTP  241 (298)
T ss_dssp             TTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSC---CHHHHHHHHHHHHHHSC
T ss_pred             cccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhcc---ccHHHHHHHHhhccCcc
Confidence                      23446899999999999989999999999999999999999999765321   11122222211110000


Q ss_pred             HHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          340 RKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                      .                              .       ......++.+.+||.+||+.||++|||++++++.
T Consensus       242 ~------------------------------~-------~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~  277 (298)
T 1csn_A          242 L------------------------------R-------ELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGL  277 (298)
T ss_dssp             H------------------------------H-------HHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHH
T ss_pred             H------------------------------H-------HHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHH
Confidence            0                              0       0112346789999999999999999999999754

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=7.7e-42  Score=339.58  Aligned_cols=278  Identities=21%  Similarity=0.336  Sum_probs=209.4

Q ss_pred             ccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhH------------------HHHHHHHHHHHHh
Q 013220           28 RVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFA------------------QAALHEIEVLSAV   89 (447)
Q Consensus        28 ~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~------------------~~~~~E~~~l~~l   89 (447)
                      ..++... ++|++.+.||+|+||.||+|++  +++.||+|++.......                  +.+.+|+++++.+
T Consensus        24 ~~~~~~~-~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l  100 (348)
T 2pml_X           24 KEKDKYI-NDYRIIRTLNQGKFNKIILCEK--DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDI  100 (348)
T ss_dssp             SSSCEEE-TTEEEEEEEECCSSCCEEEEEE--TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTC
T ss_pred             hhccccc-CceEEEEEEcCCCCeEEEEEEc--CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhC
Confidence            3355554 7999999999999999999998  89999999887654321                  7789999999999


Q ss_pred             hcCCCCCcceeeeecccccccCCCcceEEEEEecc-cccHHHH------HHhhccCCCCHHHHHHHHHHHHHHHHHHHh-
Q 013220           90 ADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRL------IKYSRYKGLELNKVREICKYILTGLDYLHR-  161 (447)
Q Consensus        90 ~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~------~~~~~~~~l~~~~~~~i~~qil~aL~~lH~-  161 (447)
                            .|+||+++++++...    ...++||||+ +++|.++      +.......+++..+..++.|++.||+|||+ 
T Consensus       101 ------~h~~i~~~~~~~~~~----~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~  170 (348)
T 2pml_X          101 ------KNEYCLTCEGIITNY----DEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNE  170 (348)
T ss_dssp             ------CCTTBCCCSEEEESS----SEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ------CCCCcceEEEEEeeC----CeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhcc
Confidence                  789999999998753    6899999999 7788876      443224568999999999999999999998 


Q ss_pred             hCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCC
Q 013220          162 ELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIEL  241 (447)
Q Consensus       162 ~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (447)
                      + ||+||||||+||++                                                                
T Consensus       171 ~-~i~H~dl~p~Nil~----------------------------------------------------------------  185 (348)
T 2pml_X          171 K-NICHRDVKPSNILM----------------------------------------------------------------  185 (348)
T ss_dssp             S-CEECCCCCGGGEEE----------------------------------------------------------------
T ss_pred             C-CEeecCCChHhEEE----------------------------------------------------------------
Confidence            7 99999999999999                                                                


Q ss_pred             CCCCccCCCcccceeEeecCccccccc-ccccCCCCCCccChHHhhcC-CCCc-cchhHhHHHHHHHHhhCCCCCCCCCC
Q 013220          242 PKPERCLDGIDMRCKVVDFGNACRANK-QFAEEIQTRQYRAPEVILRA-GYSF-SVDMWSFACTAFELATGDMLFAPKSG  318 (447)
Q Consensus       242 ~~~~~~~~~~~~~~kL~Dfg~a~~~~~-~~~~~~gt~~y~aPE~l~~~-~~~~-~~DiwSlGvil~~l~~g~~Pf~~~~~  318 (447)
                              +.+..++|+|||.+..... ......|+..|+|||.+.+. .++. ++|||||||++|+|++|..||...+.
T Consensus       186 --------~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~  257 (348)
T 2pml_X          186 --------DKNGRVKLSDFGESEYMVDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKIS  257 (348)
T ss_dssp             --------CTTSCEEECCCTTCEECBTTEECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSC
T ss_pred             --------cCCCcEEEeccccccccccccccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCc
Confidence                    3456799999999976433 33455789999999999887 5665 99999999999999999999976531


Q ss_pred             CCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhcccc
Q 013220          319 QGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDF  398 (447)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~  398 (447)
                           .......+.......+..    ...   +...              ...  ..........+..+.+||.+||+.
T Consensus       258 -----~~~~~~~i~~~~~~~~~~----~~~---~~~~--------------~~~--~~~~~~~~~~~~~l~~li~~~L~~  309 (348)
T 2pml_X          258 -----LVELFNNIRTKNIEYPLD----RNH---FLYP--------------LTN--KKSTCSNNFLSNEDIDFLKLFLRK  309 (348)
T ss_dssp             -----SHHHHHHHTSCCCCCCCS----SSS---STTT--------------TCC----------CCCHHHHHHHHHHCCS
T ss_pred             -----HHHHHHHHhccCcCCccc----hhh---hhcc--------------ccc--cccccchhhcCHHHHHHHHHHccC
Confidence                 122222211100000100    000   0000              000  000011234567899999999999


Q ss_pred             CCCCCCChHHHhcCccccccc
Q 013220          399 TPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       399 dP~kRpta~elL~hp~f~~~~  419 (447)
                      ||++|||++|+|+||||+...
T Consensus       310 dP~~Rps~~e~l~hp~f~~~~  330 (348)
T 2pml_X          310 NPAERITSEDALKHEWLADTN  330 (348)
T ss_dssp             SGGGSCCHHHHHTSGGGTTCC
T ss_pred             ChhhCCCHHHHhcCccccCCC
Confidence            999999999999999999754

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=4.8e-41  Score=325.40  Aligned_cols=257  Identities=30%  Similarity=0.469  Sum_probs=205.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.+.||+|+||+||+|++..+++.||+|++....   ...+.+.+|+++++.+      .|+||+++++++...  
T Consensus        22 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~~--   93 (287)
T 2wei_A           22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKL------DHPNIMKLFEILEDS--   93 (287)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTC------CCTTBCCEEEEEECS--
T ss_pred             hcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhc------cCCCccEEEEEEeCC--
Confidence            68999999999999999999999999999999876543   2356788999999998      789999999998753  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                        ...++||||+ +++|.+.+...  ..+++..+..++.|++.||+|||++ ||+|+||||+||++...           
T Consensus        94 --~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~-~i~H~dl~p~NIlv~~~-----------  157 (287)
T 2wei_A           94 --SSFYIVGELYTGGELFDEIIKR--KRFSEHDAARIIKQVFSGITYMHKH-NIVHRDLKPENILLESK-----------  157 (287)
T ss_dssp             --SEEEEEECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEESCS-----------
T ss_pred             --CeEEEEEEccCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCChhhEEEecC-----------
Confidence              6899999999 88998887654  3589999999999999999999997 99999999999999431           


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                .....++|+|||.+......  
T Consensus       158 ----------------------------------------------------------~~~~~~kL~Dfg~~~~~~~~~~  179 (287)
T 2wei_A          158 ----------------------------------------------------------EKDCDIKIIDFGLSTCFQQNTK  179 (287)
T ss_dssp             ----------------------------------------------------------STTCCEEECSTTGGGTBCCCSS
T ss_pred             ----------------------------------------------------------CCcccEEEeccCcceeecCCCc
Confidence                                                                      22456999999998755432  


Q ss_pred             cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          270 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      .....+++.|+|||.+.+ .++.++|||||||++|+|++|..||...+      .......+..  +..+..        
T Consensus       180 ~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~------~~~~~~~~~~--~~~~~~--------  242 (287)
T 2wei_A          180 MKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKN------EYDILKRVET--GKYAFD--------  242 (287)
T ss_dssp             CSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHH--CCCCCC--------
T ss_pred             cccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCC------HHHHHHHHHc--CCCCCC--------
Confidence            223357899999999876 48899999999999999999999997652      2222222111  110000        


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                  ......++..+.+||.+||+.||++|||++|+|+||||+...
T Consensus       243 ----------------------------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~hp~~~~~~  284 (287)
T 2wei_A          243 ----------------------------LPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPWIQKYS  284 (287)
T ss_dssp             ----------------------------SGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHSHHHHHHC
T ss_pred             ----------------------------chhhhhcCHHHHHHHHHHcccChhhCcCHHHHhcCHHHhccc
Confidence                                        000123466899999999999999999999999999998654

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=9e-42  Score=331.83  Aligned_cols=264  Identities=30%  Similarity=0.446  Sum_probs=185.0

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      .++|++.+.||+|+||+||+|++..+++.||+|++....  ...+.+.+|+++++.+      .|+||+++++++...  
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~~--   85 (303)
T 2vwi_A           14 RDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQC------HHPNIVSYYTSFVVK--   85 (303)
T ss_dssp             CCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCC------CCTTBCCEEEEEESS--
T ss_pred             hhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhc------CCCCEeeEEEEEeec--
Confidence            479999999999999999999998899999999876542  2345667788777777      799999999998754  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhh------ccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYS------RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK  185 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~------~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~  185 (447)
                        ...++||||+ +++|.+++...      ....+++..+..++.|++.||+|||++ ||+||||||+||++        
T Consensus        86 --~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~i~H~dl~p~Nil~--------  154 (303)
T 2vwi_A           86 --DELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN-GQIHRDVKAGNILL--------  154 (303)
T ss_dssp             --SCEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSGGGEEE--------
T ss_pred             --CCcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhC-CCCCCCCChhhEEE--------
Confidence              5799999999 88999888642      123489999999999999999999997 99999999999999        


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccc
Q 013220          186 DPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR  265 (447)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~  265 (447)
                                                                                      +.++.++|+|||.+..
T Consensus       155 ----------------------------------------------------------------~~~~~~kl~dfg~~~~  170 (303)
T 2vwi_A          155 ----------------------------------------------------------------GEDGSVQIADFGVSAF  170 (303)
T ss_dssp             ----------------------------------------------------------------CTTCCEEECCCHHHHH
T ss_pred             ----------------------------------------------------------------cCCCCEEEEeccchhe
Confidence                                                                            3456799999999865


Q ss_pred             cccc--------cccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhC
Q 013220          266 ANKQ--------FAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIG  336 (447)
Q Consensus       266 ~~~~--------~~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g  336 (447)
                      ....        .....||+.|+|||.+.+ ..++.++|||||||++|+|++|..||...+      ......   ....
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~------~~~~~~---~~~~  241 (303)
T 2vwi_A          171 LATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYP------PMKVLM---LTLQ  241 (303)
T ss_dssp             CC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSC------GGGHHH---HHHT
T ss_pred             eccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCc------hhhHHH---HHhc
Confidence            4321        223468999999999976 568999999999999999999999997653      111111   1111


Q ss_pred             CCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccc
Q 013220          337 KMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  416 (447)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~  416 (447)
                      ..+..+                            ... ..........+..+.+||.+||+.||++|||+.++++||||+
T Consensus       242 ~~~~~~----------------------------~~~-~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h~~~~  292 (303)
T 2vwi_A          242 NDPPSL----------------------------ETG-VQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLRHKFFQ  292 (303)
T ss_dssp             SSCCCT----------------------------TC------CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHTSTTC-
T ss_pred             cCCCcc----------------------------ccc-cccchhhhhhhHHHHHHHHHHccCChhhCcCHHHHhhChhhh
Confidence            111000                            000 000112234466899999999999999999999999999998


Q ss_pred             ccc
Q 013220          417 LRN  419 (447)
Q Consensus       417 ~~~  419 (447)
                      ...
T Consensus       293 ~~~  295 (303)
T 2vwi_A          293 KAK  295 (303)
T ss_dssp             ---
T ss_pred             cCC
Confidence            654

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=1.2e-40  Score=326.65  Aligned_cols=255  Identities=25%  Similarity=0.396  Sum_probs=199.4

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      +++|++.+.||+|+||.||+|++. +++.||+|++...   ....+.+.+|+++++.+.+    .|+||+++++++..  
T Consensus        27 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~----~~~~iv~~~~~~~~--   99 (313)
T 3cek_A           27 GRIYSILKQIGSGGSSKVFQVLNE-KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQ----HSDKIIRLYDYEIT--   99 (313)
T ss_dssp             TEEEEEEEEEECCSSEEEEEEECT-TCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGG----GCTTBCCEEEEEEC--
T ss_pred             cceEEEEEEecCCCCEEEEEEEcC-CCcEEEEEEeccccccccchHHHHHHHHHHHhccc----cCCceEEEEEEeec--
Confidence            578999999999999999999885 4889999987543   3445678999999999964    36899999998875  


Q ss_pred             CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          112 PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       112 ~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                        ....++|||+.+++|.+++...  ..+++..+..++.|++.||+|||++ ||+||||||+||++.             
T Consensus       100 --~~~~~lv~e~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~dlkp~NIl~~-------------  161 (313)
T 3cek_A          100 --DQYIYMVMECGNIDLNSWLKKK--KSIDPWERKSYWKNMLEAVHTIHQH-GIVHSDLKPANFLIV-------------  161 (313)
T ss_dssp             --SSEEEEEECCCSEEHHHHHHHC--SSCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEEE-------------
T ss_pred             --CCEEEEEEecCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CceecCCCcccEEEE-------------
Confidence              3689999997799999998754  3589999999999999999999997 999999999999992             


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                  ...++|+|||++......  
T Consensus       162 ------------------------------------------------------------~~~~kL~Dfg~~~~~~~~~~  181 (313)
T 3cek_A          162 ------------------------------------------------------------DGMLKLIDFGIANQMQPDTT  181 (313)
T ss_dssp             ------------------------------------------------------------TTEEEECCCSSSCC------
T ss_pred             ------------------------------------------------------------CCeEEEeeccccccccCccc
Confidence                                                                        246999999999754332  


Q ss_pred             ---cccCCCCCCccChHHhhc-----------CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHh
Q 013220          270 ---FAEEIQTRQYRAPEVILR-----------AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI  335 (447)
Q Consensus       270 ---~~~~~gt~~y~aPE~l~~-----------~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~  335 (447)
                         .....|++.|+|||.+.+           ..++.++|||||||++|+|++|..||....     ..   ...+....
T Consensus       182 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~-----~~---~~~~~~~~  253 (313)
T 3cek_A          182 SVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII-----NQ---ISKLHAII  253 (313)
T ss_dssp             --------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCC-----SH---HHHHHHHH
T ss_pred             cccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHH-----HH---HHHHHHHH
Confidence               123468999999999975           467899999999999999999999996542     11   11111111


Q ss_pred             CCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          336 GKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       336 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      ...                                     ....++...+..+.+||.+||+.||++|||++|+|+||||
T Consensus       254 ~~~-------------------------------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h~~~  296 (313)
T 3cek_A          254 DPN-------------------------------------HEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYV  296 (313)
T ss_dssp             CTT-------------------------------------SCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHH
T ss_pred             hcc-------------------------------------cccCCcccchHHHHHHHHHHccCCcccCcCHHHHhcCccc
Confidence            100                                     0011233345688999999999999999999999999999


Q ss_pred             cccc
Q 013220          416 SLRN  419 (447)
Q Consensus       416 ~~~~  419 (447)
                      +...
T Consensus       297 ~~~~  300 (313)
T 3cek_A          297 QIQT  300 (313)
T ss_dssp             HCC-
T ss_pred             cCCC
Confidence            9754

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=7.6e-41  Score=323.55  Aligned_cols=257  Identities=22%  Similarity=0.288  Sum_probs=202.2

Q ss_pred             cCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH--------hHHHHHHHHHHHHHhhcCCCCCccee
Q 013220           29 VGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ--------FAQAALHEIEVLSAVADGDPSNEKCV  100 (447)
Q Consensus        29 ~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~--------~~~~~~~E~~~l~~l~~~~~~~~~~I  100 (447)
                      ++.+. .++|++.+.||+|+||+||+|++..+++.||+|++.....        ..+.+.+|+++++.+      +|+||
T Consensus        13 ~~~~~-~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i   85 (287)
T 4f0f_A           13 LPTLA-DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNL------NHPNI   85 (287)
T ss_dssp             CCBCC-STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTC------CCTTB
T ss_pred             hhhhh-hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhC------CCCCc
Confidence            34444 5899999999999999999999999999999998753321        115788999999999      79999


Q ss_pred             eeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCC--cccccCCCCCeEe
Q 013220          101 IRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELG--IIHTDLKPENILL  177 (447)
Q Consensus       101 v~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~g--IiH~Dikp~Nill  177 (447)
                      +++++++...      .++||||+ +++|.+.+.... ..+++..+..++.|++.||+|||++ |  |+||||||+||++
T Consensus        86 ~~~~~~~~~~------~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~-~~~ivH~dikp~Nil~  157 (287)
T 4f0f_A           86 VKLYGLMHNP------PRMVMEFVPCGDLYHRLLDKA-HPIKWSVKLRLMLDIALGIEYMQNQ-NPPIVHRDLRSPNIFL  157 (287)
T ss_dssp             CCEEEEETTT------TEEEEECCTTCBHHHHHHCTT-SCCCHHHHHHHHHHHHHHHHHHHTS-SSCCBCSCCSGGGEEE
T ss_pred             hhhheeecCC------CeEEEEecCCCCHHHHHhccc-CCccHHHHHHHHHHHHHHHHHHHhC-CCCeecCCCCcceEEE
Confidence            9999998753      26999999 789988775433 4689999999999999999999996 9  9999999999999


Q ss_pred             eecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeE
Q 013220          178 VSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKV  257 (447)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL  257 (447)
                      .....                                                                   .....++|
T Consensus       158 ~~~~~-------------------------------------------------------------------~~~~~~kl  170 (287)
T 4f0f_A          158 QSLDE-------------------------------------------------------------------NAPVCAKV  170 (287)
T ss_dssp             SCCCT-------------------------------------------------------------------TCSCCEEE
T ss_pred             eccCC-------------------------------------------------------------------CCceeEEe
Confidence            43210                                                                   12335899


Q ss_pred             eecCcccccccccccCCCCCCccChHHhh--cCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHh
Q 013220          258 VDFGNACRANKQFAEEIQTRQYRAPEVIL--RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI  335 (447)
Q Consensus       258 ~Dfg~a~~~~~~~~~~~gt~~y~aPE~l~--~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~  335 (447)
                      +|||++...........||+.|+|||.+.  ...++.++|||||||++|+|++|..||...+.     ............
T Consensus       171 ~Dfg~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~-----~~~~~~~~~~~~  245 (287)
T 4f0f_A          171 ADFGLSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSY-----GKIKFINMIREE  245 (287)
T ss_dssp             CCCTTCBCCSSCEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCC-----CHHHHHHHHHHS
T ss_pred             CCCCccccccccccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccc-----cHHHHHHHHhcc
Confidence            99999987766666778999999999984  44578999999999999999999999975531     111111111110


Q ss_pred             CCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          336 GKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       336 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                      +.                                       ...++...++.+.+||.+||+.||++|||++|+++
T Consensus       246 ~~---------------------------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  282 (287)
T 4f0f_A          246 GL---------------------------------------RPTIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVK  282 (287)
T ss_dssp             CC---------------------------------------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CC---------------------------------------CCCCCcccCHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence            10                                       11234556778999999999999999999999985

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=5.8e-41  Score=328.48  Aligned_cols=256  Identities=25%  Similarity=0.411  Sum_probs=199.6

Q ss_pred             CccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH-------hHHHHHHHHHHHHHhhcCCCCCcceeee
Q 013220           30 GDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ-------FAQAALHEIEVLSAVADGDPSNEKCVIR  102 (447)
Q Consensus        30 g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~-------~~~~~~~E~~~l~~l~~~~~~~~~~Iv~  102 (447)
                      ++.+. ++|++.+.||+|+||+||+|++..+++.||+|++.....       ....+.+|++++..+....  .|+||++
T Consensus        26 ~~~~~-~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~--~h~~i~~  102 (312)
T 2iwi_A           26 REAFE-AEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGG--GHPGVIR  102 (312)
T ss_dssp             --------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSC--CCSSBCC
T ss_pred             hhhhh-hceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccC--CCCCeee
Confidence            45554 789999999999999999999999999999999865431       2335667999999986543  6999999


Q ss_pred             ecccccccCCCcceEEEEEec-c-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeec
Q 013220          103 LIDHFKHAGPNGQHLCMVLEF-L-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVST  180 (447)
Q Consensus       103 ~~~~~~~~~~~~~~~~lvmE~-~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~  180 (447)
                      +++++...    ...++|||+ + +++|.+++...  ..+++..+..++.|++.||+|||++ ||+||||||+||+++. 
T Consensus       103 ~~~~~~~~----~~~~~v~e~~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~Nil~~~-  174 (312)
T 2iwi_A          103 LLDWFETQ----EGFMLVLERPLPAQDLFDYITEK--GPLGEGPSRCFFGQVVAAIQHCHSR-GVVHRDIKDENILIDL-  174 (312)
T ss_dssp             EEEEC---------CEEEEECCSSEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHH-TEECCCCSGGGEEEET-
T ss_pred             EEEEEecC----CeEEEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeecCCChhhEEEeC-
Confidence            99998753    678999999 5 78999988754  3489999999999999999999997 9999999999999941 


Q ss_pred             CCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeec
Q 013220          181 IDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDF  260 (447)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Df  260 (447)
                                                                                            ....++|+||
T Consensus       175 ----------------------------------------------------------------------~~~~~kl~df  184 (312)
T 2iwi_A          175 ----------------------------------------------------------------------RRGCAKLIDF  184 (312)
T ss_dssp             ----------------------------------------------------------------------TTTEEEECCC
T ss_pred             ----------------------------------------------------------------------CCCeEEEEEc
Confidence                                                                                  3567999999


Q ss_pred             Cccccccc-ccccCCCCCCccChHHhhcCCCC-ccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCC
Q 013220          261 GNACRANK-QFAEEIQTRQYRAPEVILRAGYS-FSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKM  338 (447)
Q Consensus       261 g~a~~~~~-~~~~~~gt~~y~aPE~l~~~~~~-~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~  338 (447)
                      |++..... ......|+..|+|||.+.+..+. .++|||||||++|+|++|..||....                     
T Consensus       185 g~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~---------------------  243 (312)
T 2iwi_A          185 GSGALLHDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ---------------------  243 (312)
T ss_dssp             SSCEECCSSCBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH---------------------
T ss_pred             chhhhcccCcccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChH---------------------
Confidence            99976543 33445789999999999887664 58999999999999999999995320                     


Q ss_pred             CHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          339 PRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                                                       .+......++...+..+.+||.+||+.||++|||++|+|+||||+..
T Consensus       244 ---------------------------------~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~~~~~~~  290 (312)
T 2iwi_A          244 ---------------------------------EILEAELHFPAHVSPDCCALIRRCLAPKPSSRPSLEEILLDPWMQTP  290 (312)
T ss_dssp             ---------------------------------HHHHTCCCCCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHHSTTTCC-
T ss_pred             ---------------------------------HHhhhccCCcccCCHHHHHHHHHHccCChhhCcCHHHHhcChhhcCc
Confidence                                             01111122344556789999999999999999999999999999975


Q ss_pred             cC
Q 013220          419 NS  420 (447)
Q Consensus       419 ~~  420 (447)
                      ..
T Consensus       291 ~~  292 (312)
T 2iwi_A          291 AE  292 (312)
T ss_dssp             --
T ss_pred             hh
Confidence            43

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=1.5e-40  Score=318.69  Aligned_cols=248  Identities=22%  Similarity=0.354  Sum_probs=202.2

Q ss_pred             ccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           33 FNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        33 ~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      +..++|++.++||+|+||+||+|++. ++..||+|++.......+.+.+|+++++.+      .|+||+++++++...  
T Consensus         7 i~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~~--   77 (269)
T 4hcu_A            7 IDPSELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAMSEEDFIEEAEVMMKL------SHPKLVQLYGVCLEQ--   77 (269)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEET-TTEEEEEEEECTTSBCHHHHHHHHHHHHTC------CCTTBCCEEEEECSS--
T ss_pred             eChhhceeeheecCCCccEEEEEEec-CCCeEEEEEecccccCHHHHHHHHHHHHhC------CCCCEeeEEEEEecC--
Confidence            34578999999999999999999986 467799999887665567899999999999      789999999998753  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                        ...++||||+ +++|.+++.... ..+++..+..++.|++.||+|||++ ||+||||||+||++              
T Consensus        78 --~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~-~i~H~dikp~Nil~--------------  139 (269)
T 4hcu_A           78 --APICLVFEFMEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAYLEEA-CVIHRDLAARNCLV--------------  139 (269)
T ss_dssp             --SSEEEEEECCTTCBHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEE--------------
T ss_pred             --CceEEEEEeCCCCcHHHHHHhcC-cccCHHHHHHHHHHHHHHHHHHHhC-CeecCCcchheEEE--------------
Confidence              5799999999 789998886533 4589999999999999999999996 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                +....++|+|||.+......  
T Consensus       140 ----------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~  161 (269)
T 4hcu_A          140 ----------------------------------------------------------GENQVIKVSDFGMTRFVLDDQY  161 (269)
T ss_dssp             ----------------------------------------------------------CGGGCEEECCTTGGGGBCCHHH
T ss_pred             ----------------------------------------------------------cCCCCEEecccccccccccccc
Confidence                                                                      34567999999999755422  


Q ss_pred             --cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCC
Q 013220          270 --FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  346 (447)
Q Consensus       270 --~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  346 (447)
                        .....+|..|+|||.+.+..++.++|||||||++|+|++ |..||...+      .......+..   .         
T Consensus       162 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~------~~~~~~~~~~---~---------  223 (269)
T 4hcu_A          162 TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRS------NSEVVEDIST---G---------  223 (269)
T ss_dssp             HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC------HHHHHHHHHT---T---------
T ss_pred             ccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCC------HHHHHHHHhc---C---------
Confidence              223356778999999999999999999999999999999 999997542      1111111111   0         


Q ss_pred             CCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          347 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                   .....+...+..+.+||.+||+.||++|||++|+++|
T Consensus       224 -----------------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~  260 (269)
T 4hcu_A          224 -----------------------------FRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQ  260 (269)
T ss_dssp             -----------------------------CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -----------------------------ccCCCCCcCCHHHHHHHHHHccCCcccCcCHHHHHHH
Confidence                                         0111233446789999999999999999999999976

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=1e-40  Score=332.83  Aligned_cols=251  Identities=25%  Similarity=0.354  Sum_probs=201.3

Q ss_pred             CCceEEEEeecccCceEEEEEE-----eCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAY-----DTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~-----~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      .++|++.++||+|+||.||+|+     +..+++.||||+++...  ...+.+.+|+++++.+.     +|+||+++++++
T Consensus        21 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~hpniv~~~~~~   95 (359)
T 3vhe_A           21 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIG-----HHLNVVNLLGAC   95 (359)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHC-----CCTTBCCEEEEE
T ss_pred             ccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhc-----CCcceeeeeeee
Confidence            4899999999999999999998     56678999999987542  33457899999999995     789999999998


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhcc-------------------------------------------------
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSRY-------------------------------------------------  137 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~-------------------------------------------------  137 (447)
                      ...   +...++||||| +++|.+++.....                                                 
T Consensus        96 ~~~---~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (359)
T 3vhe_A           96 TKP---GGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKS  172 (359)
T ss_dssp             CST---TSCCEEEEECCTTEEHHHHHHTTTTSBCSCC-------------------------------------------
T ss_pred             ecC---CCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccc
Confidence            763   35689999999 8899998865431                                                 


Q ss_pred             ---------------CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCC
Q 013220          138 ---------------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGS  202 (447)
Q Consensus       138 ---------------~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~  202 (447)
                                     ..+++..+..++.||+.||+|||++ ||+||||||+||++                         
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~-~ivH~Dikp~NIll-------------------------  226 (359)
T 3vhe_A          173 LSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR-KCIHRDLAARNILL-------------------------  226 (359)
T ss_dssp             -----------CTTTTCBCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEE-------------------------
T ss_pred             cchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHC-CcccCCCChhhEEE-------------------------
Confidence                           1178889999999999999999997 99999999999999                         


Q ss_pred             CCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-----cccCCCCC
Q 013220          203 INGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-----FAEEIQTR  277 (447)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-----~~~~~gt~  277 (447)
                                                                     +....++|+|||++......     .....||+
T Consensus       227 -----------------------------------------------~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~  259 (359)
T 3vhe_A          227 -----------------------------------------------SEKNVVKICDFGLARDIYKDPDYVRKGDARLPL  259 (359)
T ss_dssp             -----------------------------------------------CGGGCEEECCCGGGSCTTSCTTCEEC--CEECG
T ss_pred             -----------------------------------------------cCCCcEEEEeccceeeecccccchhccccCCCc
Confidence                                                           34567999999999754322     22345788


Q ss_pred             CccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhccc
Q 013220          278 QYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH  356 (447)
Q Consensus       278 ~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  356 (447)
                      .|+|||++.+..++.++|||||||++|+|++ |..||.....     .. .+.......                     
T Consensus       260 ~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~-----~~-~~~~~~~~~---------------------  312 (359)
T 3vhe_A          260 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI-----DE-EFCRRLKEG---------------------  312 (359)
T ss_dssp             GGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC-----SH-HHHHHHHHT---------------------
T ss_pred             eeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccch-----hH-HHHHHHHcC---------------------
Confidence            9999999999999999999999999999998 9999976531     11 111111110                     


Q ss_pred             chhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          357 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                         .....+...++++.++|.+||+.||++|||++|+++|
T Consensus       313 -------------------~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~  349 (359)
T 3vhe_A          313 -------------------TRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  349 (359)
T ss_dssp             -------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -------------------CCCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHH
Confidence                               0112334456789999999999999999999999986

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=1.1e-40  Score=323.14  Aligned_cols=256  Identities=25%  Similarity=0.383  Sum_probs=199.8

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      +|.....||+|+||+||+|++..++..||+|.+.... ...+.+.+|+++++.+      .|+||+++++++...    .
T Consensus        23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~~----~   92 (295)
T 2clq_A           23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHL------KHKNIVQYLGSFSEN----G   92 (295)
T ss_dssp             TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTC------CCTTBCCEEEEEEET----T
T ss_pred             CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhC------CCCCEeeEeeEEEeC----C
Confidence            3444458999999999999999999999999876542 3456788999999999      789999999998753    6


Q ss_pred             eEEEEEecc-cccHHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          116 HLCMVLEFL-GDSLLRLIKYSRY-KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       116 ~~~lvmE~~-~~~L~~~~~~~~~-~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ..++||||+ +++|.+++..... ..+++..+..++.|++.||+|||++ ||+|+||||+||++..              
T Consensus        93 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~Nil~~~--------------  157 (295)
T 2clq_A           93 FIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDN-QIVHRDIKGDNVLINT--------------  157 (295)
T ss_dssp             EEEEEEECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEET--------------
T ss_pred             cEEEEEEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhC-CEEccCCChhhEEEEC--------------
Confidence            899999999 8899988865422 2467888999999999999999997 9999999999999942              


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---c
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---F  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~  270 (447)
                                                                               ....++|+|||.+......   .
T Consensus       158 ---------------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~  180 (295)
T 2clq_A          158 ---------------------------------------------------------YSGVLKISDFGTSKRLAGINPCT  180 (295)
T ss_dssp             ---------------------------------------------------------TTCCEEECCTTTCEESCC-----
T ss_pred             ---------------------------------------------------------CCCCEEEeecccccccCCCCCcc
Confidence                                                                     1457999999999765422   2


Q ss_pred             ccCCCCCCccChHHhhcCC--CCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          271 AEEIQTRQYRAPEVILRAG--YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~--~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      ....|++.|+|||.+.+..  ++.++|||||||++|+|++|..||....      ...........              
T Consensus       181 ~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~------~~~~~~~~~~~--------------  240 (295)
T 2clq_A          181 ETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELG------EPQAAMFKVGM--------------  240 (295)
T ss_dssp             CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGS------SHHHHHHHHHH--------------
T ss_pred             cccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCC------chhHHHHhhcc--------------
Confidence            3457899999999998754  7899999999999999999999996432      11110000000              


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                               ......++...+.++.+||.+||+.||++|||++|+|+||||+...
T Consensus       241 -------------------------~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~~~~~~~~~  286 (295)
T 2clq_A          241 -------------------------FKVHPEIPESMSAEAKAFILKCFEPDPDKRACANDLLVDEFLKVSS  286 (295)
T ss_dssp             -------------------------HCCCCCCCTTSCHHHHHHHHHTTCSSTTTSCCHHHHHTSGGGCC--
T ss_pred             -------------------------ccccccccccCCHHHHHHHHHHccCChhhCCCHHHHhcChhhhhcc
Confidence                                     0111224455677899999999999999999999999999999654

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=1.3e-40  Score=333.80  Aligned_cols=275  Identities=16%  Similarity=0.194  Sum_probs=206.2

Q ss_pred             cccccCcccc---CCceEEEEeecccCceEEEEEEeCCC-----CeEEEEEEechhHHhHHHHHHHHHHHHHhhc-----
Q 013220           25 HAVRVGDLFN---GGRYIAQRKLGWGQFSIVWLAYDTRT-----SSYVALKIQKSAAQFAQAALHEIEVLSAVAD-----   91 (447)
Q Consensus        25 ~~~~~g~~~~---~~~y~l~~~lG~G~~g~Vy~a~~~~~-----~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~-----   91 (447)
                      .++..|+++.   .++|++.++||+|+||+||+|.+..+     ++.||+|++....   ..+.+|+++++.+.+     
T Consensus        21 ~~~~~g~~i~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~e~~~~~~~~~~~~~~   97 (364)
T 3op5_A           21 EQFAVGEIITDMAAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDN---GPLFTELKFYQRAAKPEQIQ   97 (364)
T ss_dssp             CCCCTTCEEECTTCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTC---HHHHHHHHHHHHHCCHHHHH
T ss_pred             hhcCCCcEeeccCCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccc---hhHHHHHHHHHhhhhhHHHH
Confidence            3567777765   36999999999999999999988764     5889999877553   245556666665543     


Q ss_pred             ----CCCCCcceeeeecccccccCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCccc
Q 013220           92 ----GDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIH  167 (447)
Q Consensus        92 ----~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH  167 (447)
                          .....|+||+++++++.....+..+.++||||++++|.+++... ...+++..+..++.||+.||+|||++ ||+|
T Consensus        98 e~~~~~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~g~~L~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~-~iiH  175 (364)
T 3op5_A           98 KWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRFGSDLQKIYEAN-AKRFSRKTVLQLSLRILDILEYIHEH-EYVH  175 (364)
T ss_dssp             HHHHHTTCSCCCSCCEEEEEEEEETTEEEEEEEEECEEEEHHHHHHHT-TSCCCHHHHHHHHHHHHHHHHHHHHT-TEEC
T ss_pred             HHHHHhhccCCCCCeEEeeeeeccCCcceEEEEEeCCCCCHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHC-CeEE
Confidence                12347999999999988765455789999999999999988653 24699999999999999999999997 9999


Q ss_pred             ccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCcc
Q 013220          168 TDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERC  247 (447)
Q Consensus       168 ~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (447)
                      |||||+|||+..                                                                    
T Consensus       176 rDlkp~Nill~~--------------------------------------------------------------------  187 (364)
T 3op5_A          176 GDIKASNLLLNY--------------------------------------------------------------------  187 (364)
T ss_dssp             CCCCGGGEEEES--------------------------------------------------------------------
T ss_pred             ecCCHHHEEEec--------------------------------------------------------------------
Confidence            999999999953                                                                    


Q ss_pred             CCCcccceeEeecCcccccccc----------cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCC
Q 013220          248 LDGIDMRCKVVDFGNACRANKQ----------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKS  317 (447)
Q Consensus       248 ~~~~~~~~kL~Dfg~a~~~~~~----------~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~  317 (447)
                        +....+||+|||++......          ....+||+.|+|||++.+..++.++|||||||++|+|++|..||.+..
T Consensus       188 --~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~  265 (364)
T 3op5_A          188 --KNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNL  265 (364)
T ss_dssp             --SCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGT
T ss_pred             --CCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccc
Confidence              13567999999999654321          123458999999999999899999999999999999999999997542


Q ss_pred             CCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccc
Q 013220          318 GQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLD  397 (447)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~  397 (447)
                           .+.............                               .+..++.... .....+.++.+||..||+
T Consensus       266 -----~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~-~~~~~~~~~~~li~~cl~  308 (364)
T 3op5_A          266 -----KDPKYVRDSKIRYRE-------------------------------NIASLMDKCF-PAANAPGEIAKYMETVKL  308 (364)
T ss_dssp             -----TCHHHHHHHHHHHHH-------------------------------CHHHHHHHHS-CTTCCCHHHHHHHHHHHT
T ss_pred             -----cCHHHHHHHHHHhhh-------------------------------hHHHHHHHhc-ccccCHHHHHHHHHHHhc
Confidence                 111111111110000                               0111111111 113346789999999999


Q ss_pred             cCCCCCCChHHHhc
Q 013220          398 FTPEKRPTAQQCLQ  411 (447)
Q Consensus       398 ~dP~kRpta~elL~  411 (447)
                      .||++||+++++++
T Consensus       309 ~~p~~RP~~~~l~~  322 (364)
T 3op5_A          309 LDYTEKPLYENLRD  322 (364)
T ss_dssp             CCTTCCCCHHHHHH
T ss_pred             CCCCCCCCHHHHHH
Confidence            99999999998874

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=1.7e-40  Score=326.05  Aligned_cols=252  Identities=23%  Similarity=0.314  Sum_probs=195.2

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      .++|++.++||+|+||+||+|++  ++..||+|++...   ....+.+.+|+++++.+      .|+||+++++++... 
T Consensus        36 ~~~y~i~~~lG~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~~~~~~~-  106 (309)
T 3p86_A           36 WCDLNIKEKIGAGSFGTVHRAEW--HGSDVAVKILMEQDFHAERVNEFLREVAIMKRL------RHPNIVLFMGAVTQP-  106 (309)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEE--TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHC------CCTTBCCEEEEECST-
T ss_pred             hhHceeeeEeecCCCeEEEEEEE--CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhC------CCCCEeeEEEEEEEC-
Confidence            47899999999999999999976  5788999987643   23345788999999999      789999999998753 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHhhCC--cccccCCCCCeEeeecCCCCCCc
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSR-YKGLELNKVREICKYILTGLDYLHRELG--IIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~-~~~l~~~~~~~i~~qil~aL~~lH~~~g--IiH~Dikp~Nill~~~~~~~~~~  187 (447)
                         ...++||||+ +++|.+++.... ...+++..+..++.|++.||+|||++ |  |+||||||+||++          
T Consensus       107 ---~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~~~ivH~Dikp~NIll----------  172 (309)
T 3p86_A          107 ---PNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR-NPPIVHRNLKSPNLLV----------  172 (309)
T ss_dssp             ---TCCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTS-SSCCCCTTCCGGGEEE----------
T ss_pred             ---CceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcC-CCCEECCCCChhhEEE----------
Confidence               5789999999 889999886432 12388999999999999999999996 9  9999999999999          


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                    +..+.+||+|||++....
T Consensus       173 --------------------------------------------------------------~~~~~~kL~Dfg~a~~~~  190 (309)
T 3p86_A          173 --------------------------------------------------------------DKKYTVKVCDFGLSRLKA  190 (309)
T ss_dssp             --------------------------------------------------------------CTTCCEEECCCC------
T ss_pred             --------------------------------------------------------------eCCCcEEECCCCCCcccc
Confidence                                                                          445679999999996543


Q ss_pred             cc---cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhh
Q 013220          268 KQ---FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  344 (447)
Q Consensus       268 ~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (447)
                      ..   .....||+.|+|||.+.+..++.++|||||||++|+|++|..||...+      .......+. ..         
T Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~------~~~~~~~~~-~~---------  254 (309)
T 3p86_A          191 STFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLN------PAQVVAAVG-FK---------  254 (309)
T ss_dssp             -----------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSC------HHHHHHHHH-HS---------
T ss_pred             ccccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHH-hc---------
Confidence            32   234578999999999999999999999999999999999999997542      111111110 00         


Q ss_pred             CCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc--Cccccc
Q 013220          345 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ--HPWLSL  417 (447)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~--hp~f~~  417 (447)
                                                    .....++...+..+.+||.+||+.||++|||++++++  .++++.
T Consensus       255 ------------------------------~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~  299 (309)
T 3p86_A          255 ------------------------------CKRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKS  299 (309)
T ss_dssp             ------------------------------CCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC-
T ss_pred             ------------------------------CCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence                                          0112244566778999999999999999999999997  566654

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=2.2e-40  Score=327.45  Aligned_cols=249  Identities=20%  Similarity=0.306  Sum_probs=198.9

Q ss_pred             ccCCceEEEEeecccCceEEEEEEeCCCC---eEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           33 FNGGRYIAQRKLGWGQFSIVWLAYDTRTS---SYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        33 ~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~---~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      +..++|++.+.||+|+||+||+|++..++   ..||||+++..  ....+.+.+|+++++.+      .|+||+++++++
T Consensus        46 ~~~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~  119 (325)
T 3kul_A           46 IEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQF------DHPNIIRLEGVV  119 (325)
T ss_dssp             CCGGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTC------CCTTBCCEEEEE
T ss_pred             cChhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhC------CCCCCCcEEEEE
Confidence            34589999999999999999999987554   45999998753  34456788999999999      799999999998


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCC
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKD  186 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~  186 (447)
                      ..    +...++||||+ +++|.+++.... ..+++..+..++.|++.||+|||+. ||+||||||+||++         
T Consensus       120 ~~----~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~L~~LH~~-~ivH~Dlkp~NIll---------  184 (325)
T 3kul_A          120 TR----GRLAMIVTEYMENGSLDTFLRTHD-GQFTIMQLVGMLRGVGAGMRYLSDL-GYVHRDLAARNVLV---------  184 (325)
T ss_dssp             CG----GGCCEEEEECCTTCBHHHHHHTTT-TCSCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEE---------
T ss_pred             Ee----CCccEEEeeCCCCCcHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHC-CeeCCCCCcceEEE---------
Confidence            75    46899999999 889999886432 4589999999999999999999996 99999999999999         


Q ss_pred             cccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccc
Q 013220          187 PIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA  266 (447)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~  266 (447)
                                                                                     +..+.++|+|||++...
T Consensus       185 ---------------------------------------------------------------~~~~~~kl~Dfg~a~~~  201 (325)
T 3kul_A          185 ---------------------------------------------------------------DSNLVCKVSDFGLSRVL  201 (325)
T ss_dssp             ---------------------------------------------------------------CTTCCEEECCCSSCEEC
T ss_pred             ---------------------------------------------------------------CCCCCEEECCCCccccc
Confidence                                                                           44677999999999765


Q ss_pred             cccc------ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCC
Q 013220          267 NKQF------AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMP  339 (447)
Q Consensus       267 ~~~~------~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~  339 (447)
                      ....      ....+|..|+|||.+.+..++.++|||||||++|+|++ |..||...+      .......+..   .  
T Consensus       202 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~------~~~~~~~~~~---~--  270 (325)
T 3kul_A          202 EDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMT------NRDVISSVEE---G--  270 (325)
T ss_dssp             C----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSC------HHHHHHHHHT---T--
T ss_pred             ccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCC------HHHHHHHHHc---C--
Confidence            4321      12245678999999998889999999999999999998 999997542      2211111111   0  


Q ss_pred             HHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          340 RKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                          .....+..++..+.+||.+||+.||++|||++++++.
T Consensus       271 ------------------------------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~  307 (325)
T 3kul_A          271 ------------------------------------YRLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSV  307 (325)
T ss_dssp             ------------------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ------------------------------------CCCCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                                                0112344557789999999999999999999999863

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=1.6e-40  Score=326.91  Aligned_cols=261  Identities=21%  Similarity=0.316  Sum_probs=187.4

Q ss_pred             ccCCceEEEEeecccCceEEEEEEeCCCCe---EEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccc
Q 013220           33 FNGGRYIAQRKLGWGQFSIVWLAYDTRTSS---YVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDH  106 (447)
Q Consensus        33 ~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~---~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~  106 (447)
                      +..++|++.+.||+|+||+||+|++..++.   .||+|+++..   ....+.+.+|+++++.+      +|+||++++++
T Consensus        20 i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~   93 (323)
T 3qup_A           20 IPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEF------DHPHVAKLVGV   93 (323)
T ss_dssp             CC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTC------CCTTBCCCCEE
T ss_pred             cChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHC------CCCceehhhce
Confidence            345899999999999999999999877665   8999988754   23456788999999998      79999999999


Q ss_pred             ccccCCCc--ceEEEEEecc-cccHHHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeee
Q 013220          107 FKHAGPNG--QHLCMVLEFL-GDSLLRLIKYSRY----KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVS  179 (447)
Q Consensus       107 ~~~~~~~~--~~~~lvmE~~-~~~L~~~~~~~~~----~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~  179 (447)
                      +......+  ...++||||+ +++|.+++.....    ..+++..+..++.|++.||+|||++ ||+||||||+||++  
T Consensus        94 ~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~-~ivH~Dikp~NIli--  170 (323)
T 3qup_A           94 SLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSR-NFIHRDLAARNCML--  170 (323)
T ss_dssp             EECC-------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEE--
T ss_pred             eeccccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcC-CcccCCCCcceEEE--
Confidence            87642211  1349999999 8899988865431    1488999999999999999999997 99999999999999  


Q ss_pred             cCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEee
Q 013220          180 TIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVD  259 (447)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~D  259 (447)
                                                                                            +.++.+||+|
T Consensus       171 ----------------------------------------------------------------------~~~~~~kl~D  180 (323)
T 3qup_A          171 ----------------------------------------------------------------------AEDMTVCVAD  180 (323)
T ss_dssp             ----------------------------------------------------------------------CTTSCEEECC
T ss_pred             ----------------------------------------------------------------------cCCCCEEEee
Confidence                                                                                  3456799999


Q ss_pred             cCccccccccc-----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHH
Q 013220          260 FGNACRANKQF-----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMME  333 (447)
Q Consensus       260 fg~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~  333 (447)
                      ||++.......     ....+++.|+|||.+.+..++.++|||||||++|+|++ |..||...+      .......+..
T Consensus       181 fg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~------~~~~~~~~~~  254 (323)
T 3qup_A          181 FGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIE------NAEIYNYLIG  254 (323)
T ss_dssp             CCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC------GGGHHHHHHT
T ss_pred             ccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccC------hHHHHHHHhc
Confidence            99997543321     12345778999999999999999999999999999999 999997653      1111111110


Q ss_pred             HhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCC-------h
Q 013220          334 LIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-------A  406 (447)
Q Consensus       334 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpt-------a  406 (447)
                         .                                      .....+...++.+.+||.+||+.||++|||       +
T Consensus       255 ---~--------------------------------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l  293 (323)
T 3qup_A          255 ---G--------------------------------------NRLKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMEL  293 (323)
T ss_dssp             ---T--------------------------------------CCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHH
T ss_pred             ---C--------------------------------------CCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence               0                                      011234455678999999999999999999       7


Q ss_pred             HHHhcCccccccc
Q 013220          407 QQCLQHPWLSLRN  419 (447)
Q Consensus       407 ~elL~hp~f~~~~  419 (447)
                      +++++|||+....
T Consensus       294 ~~~l~~~~~~~~~  306 (323)
T 3qup_A          294 ENILGHLSVLSTS  306 (323)
T ss_dssp             HHHHHC-------
T ss_pred             HHHHHHhhhcCCC
Confidence            8888999998653

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=6.3e-41  Score=330.62  Aligned_cols=268  Identities=24%  Similarity=0.278  Sum_probs=199.8

Q ss_pred             ccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           33 FNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        33 ~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      +..++|++.++||+|+||+||+|++.  ++.||||++............|+.+++.+      .|+||+++++++.....
T Consensus        21 ~~~~~y~~~~~lg~G~~g~Vy~~~~~--~~~vavK~~~~~~~~~~~~~~E~~~l~~l------~hpniv~~~~~~~~~~~   92 (322)
T 3soc_A           21 FQSMPLQLLEVKARGRFGCVWKAQLL--NEYVAVKIFPIQDKQSWQNEYEVYSLPGM------KHENILQFIGAEKRGTS   92 (322)
T ss_dssp             ETTEEEEEEEEEECSTTCEEEEEEET--TEEEEEEEECGGGHHHHHHHHHHHTSTTC------CCTTBCCEEEEEEEECS
T ss_pred             cchhhchhhheecccCceEEEEEEEC--CCEEEEEEeecCchHHHHHHHHHHHHhcC------CCCCchhhcceeccCCC
Confidence            44589999999999999999999875  78999999887665555666688878777      79999999999987654


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhC----------CcccccCCCCCeEeeecC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHREL----------GIIHTDLKPENILLVSTI  181 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~----------gIiH~Dikp~Nill~~~~  181 (447)
                      ....+++||||+ +++|.+++...   .+++..+..++.|++.||+|||+ .          ||+||||||+||++    
T Consensus        93 ~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~qi~~al~~LH~-~~~~l~~~~~~~ivH~Dlkp~Nill----  164 (322)
T 3soc_A           93 VDVDLWLITAFHEKGSLSDFLKAN---VVSWNELCHIAETMARGLAYLHE-DIPGLKDGHKPAISHRDIKSKNVLL----  164 (322)
T ss_dssp             SSEEEEEEEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHTC-CEEEETTEEECEEECSCCSGGGEEE----
T ss_pred             CCceEEEEEecCCCCCHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHh-hccccccccCCCEEeCCCChHhEEE----
Confidence            456799999999 88999998653   48999999999999999999998 6          99999999999999    


Q ss_pred             CCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecC
Q 013220          182 DPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFG  261 (447)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg  261 (447)
                                                                                          +..+.+||+|||
T Consensus       165 --------------------------------------------------------------------~~~~~~kL~DFg  176 (322)
T 3soc_A          165 --------------------------------------------------------------------KNNLTACIADFG  176 (322)
T ss_dssp             --------------------------------------------------------------------CTTCCEEECCCT
T ss_pred             --------------------------------------------------------------------CCCCeEEEccCC
Confidence                                                                                345679999999


Q ss_pred             cccccccc-----cccCCCCCCccChHHhhcC-----CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHH
Q 013220          262 NACRANKQ-----FAEEIQTRQYRAPEVILRA-----GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALM  331 (447)
Q Consensus       262 ~a~~~~~~-----~~~~~gt~~y~aPE~l~~~-----~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~  331 (447)
                      ++......     ....+||+.|+|||++.+.     .++.++|||||||++|+|++|+.||.+........-.      
T Consensus       177 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~------  250 (322)
T 3soc_A          177 LALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFE------  250 (322)
T ss_dssp             TCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTH------
T ss_pred             cccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchh------
Confidence            99654322     2235789999999999863     3567899999999999999999999876432211000      


Q ss_pred             HHHhCCCC-H-HhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHH
Q 013220          332 MELIGKMP-R-KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQC  409 (447)
Q Consensus       332 ~~~~g~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~el  409 (447)
                      .. .+..+ . .+...               .........+...     .-....++++.+||.+||+.||++|||++|+
T Consensus       251 ~~-~~~~~~~~~~~~~---------------~~~~~~~~~~~~~-----~~~~~~~~~l~~li~~cl~~dP~~Rps~~el  309 (322)
T 3soc_A          251 EE-IGQHPSLEDMQEV---------------VVHKKKRPVLRDY-----WQKHAGMAMLCETIEECWDHDAEARLSAGCV  309 (322)
T ss_dssp             HH-HCSSCCHHHHHHH---------------HTTSCCCCCCCGG-----GGSSHHHHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             hh-hccCCchhhhhhh---------------hhcccCCCCcccc-----ccccchHHHHHHHHHHHccCChhhCcCHHHH
Confidence            00 00000 0 00000               0000000000000     0112346679999999999999999999999


Q ss_pred             hc
Q 013220          410 LQ  411 (447)
Q Consensus       410 L~  411 (447)
                      ++
T Consensus       310 l~  311 (322)
T 3soc_A          310 GE  311 (322)
T ss_dssp             HH
T ss_pred             HH
Confidence            86

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=1.7e-40  Score=322.71  Aligned_cols=262  Identities=21%  Similarity=0.300  Sum_probs=198.1

Q ss_pred             cCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           29 VGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        29 ~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      +++++. ++|++.++||+|+||+||+|++  +++.||+|++....  ...+..|.+++....    ..|+||+++++++.
T Consensus         2 ~~~~~~-~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~--~~~~~~e~~~~~~~~----l~h~niv~~~~~~~   72 (301)
T 3q4u_A            2 MQRTVA-RDITLLECVGKGRYGEVWRGSW--QGENVAVKIFSSRD--EKSWFRETELYNTVM----LRHENILGFIASDM   72 (301)
T ss_dssp             --CCCG-GGCEEEEEEEECSSEEEEEEEE--TTEEEEEEEECGGG--HHHHHHHHHHHHHTC----CCCTTBCCEEEEEE
T ss_pred             cccccc-CcEEEEEeeccCCCcEEEEEEE--CCEEEEEEEecccc--chhhHHHHHHHHHhh----ccCcCeeeEEEeec
Confidence            345565 7999999999999999999987  68899999987653  355667888777742    28999999999987


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH--------hhCCcccccCCCCCeEeee
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLH--------RELGIIHTDLKPENILLVS  179 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH--------~~~gIiH~Dikp~Nill~~  179 (447)
                      ........+++||||+ +++|.+++..   ..+++..+..++.|++.||+|||        ++ ||+||||||+||++  
T Consensus        73 ~~~~~~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~-~ivH~Dlkp~Nill--  146 (301)
T 3q4u_A           73 TSRHSSTQLWLITHYHEMGSLYDYLQL---TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP-AIAHRDLKSKNILV--  146 (301)
T ss_dssp             EEETTEEEEEEEECCCTTCBHHHHHTT---CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC-EEECSCCCGGGEEE--
T ss_pred             cccCCCceeEEehhhccCCCHHHHHhh---cccCHHHHHHHHHHHHHHHHHHHHhhhhccCCC-CeecCCCChHhEEE--
Confidence            7655667899999999 7899998843   35899999999999999999999        86 99999999999999  


Q ss_pred             cCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEee
Q 013220          180 TIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVD  259 (447)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~D  259 (447)
                                                                                            +....+||+|
T Consensus       147 ----------------------------------------------------------------------~~~~~~kl~D  156 (301)
T 3q4u_A          147 ----------------------------------------------------------------------KKNGQCCIAD  156 (301)
T ss_dssp             ----------------------------------------------------------------------CTTSCEEECC
T ss_pred             ----------------------------------------------------------------------cCCCCEEEee
Confidence                                                                                  3456799999


Q ss_pred             cCcccccccc-------cccCCCCCCccChHHhhcC------CCCccchhHhHHHHHHHHhhC----------CCCCCCC
Q 013220          260 FGNACRANKQ-------FAEEIQTRQYRAPEVILRA------GYSFSVDMWSFACTAFELATG----------DMLFAPK  316 (447)
Q Consensus       260 fg~a~~~~~~-------~~~~~gt~~y~aPE~l~~~------~~~~~~DiwSlGvil~~l~~g----------~~Pf~~~  316 (447)
                      ||++......       .....||+.|+|||++.+.      .++.++|||||||++|+|++|          ..||...
T Consensus       157 fg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~  236 (301)
T 3q4u_A          157 LGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDV  236 (301)
T ss_dssp             CTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTT
T ss_pred             CCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCcccccccccccccc
Confidence            9999654322       2234789999999999876      345799999999999999999          7777654


Q ss_pred             CCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhcc
Q 013220          317 SGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLL  396 (447)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L  396 (447)
                      ....  .....+.......+..+.                             .     .....+...+..+.+||.+||
T Consensus       237 ~~~~--~~~~~~~~~~~~~~~~~~-----------------------------~-----~~~~~~~~~~~~l~~li~~cl  280 (301)
T 3q4u_A          237 VPND--PSFEDMRKVVCVDQQRPN-----------------------------I-----PNRWFSDPTLTSLAKLMKECW  280 (301)
T ss_dssp             SCSS--CCHHHHHHHHTTSCCCCC-----------------------------C-----CGGGGGSHHHHHHHHHHHHHC
T ss_pred             CCCC--cchhhhhHHHhccCCCCC-----------------------------C-----ChhhccCccHHHHHHHHHHHh
Confidence            3211  111111111110000000                             0     000022346788999999999


Q ss_pred             ccCCCCCCChHHHhc
Q 013220          397 DFTPEKRPTAQQCLQ  411 (447)
Q Consensus       397 ~~dP~kRpta~elL~  411 (447)
                      +.||++|||++|+++
T Consensus       281 ~~dP~~Rps~~~i~~  295 (301)
T 3q4u_A          281 YQNPSARLTALRIKK  295 (301)
T ss_dssp             CSSGGGSCCHHHHHH
T ss_pred             hcChhhCCCHHHHHH
Confidence            999999999999985

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=6.3e-41  Score=340.30  Aligned_cols=285  Identities=23%  Similarity=0.342  Sum_probs=213.6

Q ss_pred             CccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           30 GDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        30 g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      |.+++ ++|++.+.||+|+||+||+|++..+++.||||++....  ...+.+.+|+++++.+      .|+||+++++++
T Consensus         4 ~~~~~-~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~hpnIv~~~~~~   76 (396)
T 4eut_A            4 QSTSN-HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKL------NHKNIVKLFAIE   76 (396)
T ss_dssp             EECSS-EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHC------CCTTBCCEEEEE
T ss_pred             CCCCC-CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhc------CCCCCCeEEEee
Confidence            34454 79999999999999999999999999999999987543  2345678999999999      789999999988


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCC
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSRY-KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK  185 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~-~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~  185 (447)
                      ...  +....++||||| +++|.+++..... ..+++..+..++.|++.||+|||++ ||+||||||+||++....    
T Consensus        77 ~~~--~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dlkp~NIll~~~~----  149 (396)
T 4eut_A           77 EET--TTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN-GIVHRNIKPGNIMRVIGE----  149 (396)
T ss_dssp             ECT--TTCCEEEEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEEEECT----
T ss_pred             ccC--CCCeeEEEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHC-CEEECCcCHHHEEEeecC----
Confidence            764  345789999999 8899998865432 2389999999999999999999997 999999999999984311    


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccc
Q 013220          186 DPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR  265 (447)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~  265 (447)
                                                                                      +....+||+|||.+..
T Consensus       150 ----------------------------------------------------------------~~~~~~kL~DFG~a~~  165 (396)
T 4eut_A          150 ----------------------------------------------------------------DGQSVYKLTDFGAARE  165 (396)
T ss_dssp             ----------------------------------------------------------------TSCEEEEECCGGGCEE
T ss_pred             ----------------------------------------------------------------CCceeEEEecCCCceE
Confidence                                                                            2345799999999976


Q ss_pred             cccc--cccCCCCCCccChHHhhc--------CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHh
Q 013220          266 ANKQ--FAEEIQTRQYRAPEVILR--------AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI  335 (447)
Q Consensus       266 ~~~~--~~~~~gt~~y~aPE~l~~--------~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~  335 (447)
                      ....  ....+||+.|+|||++.+        ..++.++|||||||++|+|++|..||......     ......+.+++
T Consensus       166 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~-----~~~~~~~~~~~  240 (396)
T 4eut_A          166 LEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGP-----RRNKEVMYKII  240 (396)
T ss_dssp             CCCGGGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCT-----TTCHHHHHHHH
T ss_pred             ccCCCccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcc-----cchHHHHHHHh
Confidence            5432  334579999999999875        45778999999999999999999999765321     22233344444


Q ss_pred             CCCCHHhhhCCCCcc-chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          336 GKMPRKIAIGGAQSK-DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       336 g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                      +..|........... ..+.               +...+.....+....+..+.+||.+||+.||++|||++|++++
T Consensus       241 ~~~p~~~~~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~  303 (396)
T 4eut_A          241 TGKPSGAISGVQKAENGPID---------------WSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAE  303 (396)
T ss_dssp             HSCCTTCCEEEECSTTCCEE---------------EESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHH
T ss_pred             cCCCcccchhheeccCCCcc---------------cCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHH
Confidence            333332211100000 0000               0001111223557788899999999999999999999998644

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.4e-40  Score=334.57  Aligned_cols=257  Identities=22%  Similarity=0.327  Sum_probs=203.1

Q ss_pred             CCceEEEEeecccCceEEEEEE-----eCCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAY-----DTRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~-----~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      .++|++.++||+|+||+||+|+     +..++..||||+++..  ......+.+|+.+++.+      +|+||+++++++
T Consensus        70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~hpnIv~~~~~~  143 (367)
T 3l9p_A           70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKF------NHQNIVRCIGVS  143 (367)
T ss_dssp             GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHC------CCTTBCCEEEEE
T ss_pred             HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhC------CCCCCCeEEEEE
Confidence            4789999999999999999998     4557889999987643  33445788899999999      799999999998


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhcc-----CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecC
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSRY-----KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTI  181 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~-----~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~  181 (447)
                      ...    ...++||||| +++|.+++.....     ..+++..+..++.||+.||+|||++ ||+||||||+|||+... 
T Consensus       144 ~~~----~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivHrDlkp~NIll~~~-  217 (367)
T 3l9p_A          144 LQS----LPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN-HFIHRDIAARNCLLTCP-  217 (367)
T ss_dssp             CSS----SSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEESCS-
T ss_pred             ecC----CCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhC-CeeCCCCChhhEEEecC-
Confidence            753    5779999999 8899999876432     3488999999999999999999997 99999999999999431 


Q ss_pred             CCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecC
Q 013220          182 DPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFG  261 (447)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg  261 (447)
                                                                                          .....+||+|||
T Consensus       218 --------------------------------------------------------------------~~~~~~kL~DFG  229 (367)
T 3l9p_A          218 --------------------------------------------------------------------GPGRVAKIGDFG  229 (367)
T ss_dssp             --------------------------------------------------------------------STTCCEEECCCH
T ss_pred             --------------------------------------------------------------------CCCceEEECCCc
Confidence                                                                                123469999999


Q ss_pred             ccccccc-----ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHh
Q 013220          262 NACRANK-----QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELI  335 (447)
Q Consensus       262 ~a~~~~~-----~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~  335 (447)
                      ++.....     ......+|+.|+|||++.+..++.++|||||||++|+|++ |..||...+      .......+..  
T Consensus       230 ~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~------~~~~~~~i~~--  301 (367)
T 3l9p_A          230 MARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKS------NQEVLEFVTS--  301 (367)
T ss_dssp             HHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC------HHHHHHHHHT--
T ss_pred             cccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHc--
Confidence            9964321     1223467889999999999999999999999999999998 999997652      1111111110  


Q ss_pred             CCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          336 GKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       336 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                      +                                       .....+...+..+.+||.+||+.||++|||+++++++.|+
T Consensus       302 ~---------------------------------------~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~  342 (367)
T 3l9p_A          302 G---------------------------------------GRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEY  342 (367)
T ss_dssp             T---------------------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             C---------------------------------------CCCCCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHH
Confidence            0                                       0111334456789999999999999999999999999887


Q ss_pred             ccc
Q 013220          416 SLR  418 (447)
Q Consensus       416 ~~~  418 (447)
                      -..
T Consensus       343 ~~~  345 (367)
T 3l9p_A          343 CTQ  345 (367)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            643

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=100.00  E-value=1e-40  Score=342.85  Aligned_cols=258  Identities=21%  Similarity=0.270  Sum_probs=193.2

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      ..+|.+.+.||+|+||+||.. ...+++.||||++....  .....+|+++++.+.     .|+||+++++++..    .
T Consensus        23 ~~~y~~~~~LG~G~~G~V~~~-~~~~~~~vAvK~~~~~~--~~~~~~E~~~l~~l~-----~HpnIv~l~~~~~~----~   90 (432)
T 3p23_A           23 KISFCPKDVLGHGAEGTIVYR-GMFDNRDVAVKRILPEC--FSFADREVQLLRESD-----EHPNVIRYFCTEKD----R   90 (432)
T ss_dssp             TEEEEEEEEEEECGGGCEEEE-EESSSSEEEEEEECTTT--EEECHHHHHHHHHSC-----CCTTBCCEEEEEEE----T
T ss_pred             cEEEecCCeeecCcCEEEEEE-EEeCCeEEEEEEECHHH--HHHHHHHHHHHHhcc-----CCCCcCeEEEEEec----C
Confidence            357999999999999996643 34578899999886543  234678999999884     79999999998875    3


Q ss_pred             ceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          115 QHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       115 ~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      ...|+|||||+++|.+++.... ....+..+..++.||+.||+|||++ ||+||||||+||++.....            
T Consensus        91 ~~~~lv~E~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~-~ivHrDlKp~NIll~~~~~------------  156 (432)
T 3p23_A           91 QFQYIAIELCAATLQEYVEQKD-FAHLGLEPITLLQQTTSGLAHLHSL-NIVHRDLKPHNILISMPNA------------  156 (432)
T ss_dssp             TEEEEEEECCSEEHHHHHHSSS-CCCCSSCHHHHHHHHHHHHHHHHHT-TCCCCCCSTTSEEECCCBT------------
T ss_pred             CEEEEEEECCCCCHHHHHHhcC-CCccchhHHHHHHHHHHHHHHHHHC-cCEeCCCCHHHEEEecCCC------------
Confidence            6899999999889999886543 2345556778999999999999996 9999999999999943210            


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-----
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-----  269 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-----  269 (447)
                                                                             +....++|+|||++......     
T Consensus       157 -------------------------------------------------------~~~~~~kL~DFG~a~~~~~~~~~~~  181 (432)
T 3p23_A          157 -------------------------------------------------------HGKIKAMISDFGLCKKLAVGRHSFS  181 (432)
T ss_dssp             -------------------------------------------------------TTBCCEEECCTTEEECC--------
T ss_pred             -------------------------------------------------------CCceeEEEecccceeeccCCCccee
Confidence                                                                   22456889999999765422     


Q ss_pred             -cccCCCCCCccChHHhhc---CCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhh
Q 013220          270 -FAEEIQTRQYRAPEVILR---AGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  344 (447)
Q Consensus       270 -~~~~~gt~~y~aPE~l~~---~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (447)
                       ....+||+.|+|||++.+   ..++.++|||||||++|+|++ |..||....       .....   ...+.....   
T Consensus       182 ~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~-------~~~~~---~~~~~~~~~---  248 (432)
T 3p23_A          182 RRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSL-------QRQAN---ILLGACSLD---  248 (432)
T ss_dssp             ----CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTT-------THHHH---HHTTCCCCT---
T ss_pred             eccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhh-------HHHHH---HHhccCCcc---
Confidence             234579999999999973   567889999999999999999 899985431       11111   111111100   


Q ss_pred             CCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          345 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                                                      ........+..+.+||.+||+.||.+|||++|+|+||||...
T Consensus       249 --------------------------------~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~hp~f~~~  290 (432)
T 3p23_A          249 --------------------------------CLHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLKHPFFWSL  290 (432)
T ss_dssp             --------------------------------TSCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHTSTTTCCH
T ss_pred             --------------------------------ccCccccccHHHHHHHHHHHhCCHhhCCCHHHHHhCccccCh
Confidence                                            000122345678899999999999999999999999999754

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=100.00  E-value=5.9e-40  Score=321.44  Aligned_cols=257  Identities=23%  Similarity=0.334  Sum_probs=184.5

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.+.||+|+||+||+|++..+++.||||++....   ...+.+..+..+++.+      .|+||+++++++...  
T Consensus        25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~i~~~~~~~~~~--   96 (318)
T 2dyl_A           25 NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSH------DCPYIVQCFGTFITN--   96 (318)
T ss_dssp             GGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTT------TCTTBCCEEEEEECS--
T ss_pred             ccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhc------CCCceeeEEEEEecC--
Confidence            68999999999999999999999999999999886542   2122333344455555      899999999998753  


Q ss_pred             CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          113 NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       113 ~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                        ...++||||+++.+..+.... ...+++..+..++.|++.||+|||++.||+|+||||+||++               
T Consensus        97 --~~~~lv~e~~~~~~~~l~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dlkp~Nil~---------------  158 (318)
T 2dyl_A           97 --TDVFIAMELMGTCAEKLKKRM-QGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILL---------------  158 (318)
T ss_dssp             --SEEEEEECCCSEEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCGGGEEE---------------
T ss_pred             --CcEEEEEeccCCcHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHhhCCEEeCCCCHHHEEE---------------
Confidence              689999999977776665442 35689999999999999999999982299999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--c
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--F  270 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--~  270 (447)
                                                                               +.+..++|+|||++......  .
T Consensus       159 ---------------------------------------------------------~~~~~~kl~dfg~~~~~~~~~~~  181 (318)
T 2dyl_A          159 ---------------------------------------------------------DERGQIKLCDFGISGRLVDDKAK  181 (318)
T ss_dssp             ---------------------------------------------------------CTTSCEEECCCTTC---------
T ss_pred             ---------------------------------------------------------CCCCCEEEEECCCchhccCCccc
Confidence                                                                     34567999999999654332  2


Q ss_pred             ccCCCCCCccChHHhh-----cCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          271 AEEIQTRQYRAPEVIL-----RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~-----~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                      ....+++.|+|||.+.     ...++.++|||||||++|+|++|..||....     .....+..+..   ..+..    
T Consensus       182 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-----~~~~~~~~~~~---~~~~~----  249 (318)
T 2dyl_A          182 DRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCK-----TDFEVLTKVLQ---EEPPL----  249 (318)
T ss_dssp             -----CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCC-----SHHHHHHHHHH---SCCCC----
T ss_pred             cccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCC-----ccHHHHHHHhc---cCCCC----
Confidence            3447899999999995     4568899999999999999999999997532     12222222211   10000    


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                      .......+..+.+||.+||+.||.+|||++|+|+||||+...
T Consensus       250 --------------------------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~  291 (318)
T 2dyl_A          250 --------------------------------LPGHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLEHSFIKRYE  291 (318)
T ss_dssp             --------------------------------CCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTSHHHHHHH
T ss_pred             --------------------------------CCccCCCCHHHHHHHHHHccCChhHCcCHHHHhhCHHHHhcc
Confidence                                            001123456899999999999999999999999999998654

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=3e-40  Score=320.89  Aligned_cols=262  Identities=22%  Similarity=0.298  Sum_probs=200.1

Q ss_pred             CCceEEEEeecccCceEEEEEE----eCCCCeEEEEEEechh-HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAY----DTRTSSYVALKIQKSA-AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~----~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      .++|++.++||+|+||+||+|+    +..+++.||+|++... ....+.+.+|+++++.+      .|+||+++++++..
T Consensus         9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~   82 (295)
T 3ugc_A            9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSL------QHDNIVKYKGVCYS   82 (295)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTC------CCTTBCCEEEEECH
T ss_pred             HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhC------CCCCEeeEEEEEec
Confidence            4899999999999999999998    5678999999987653 34456788999999999      78999999998865


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                      .  +...+++||||+ +++|.+++.... ..+++..+..++.|++.||+|||++ ||+||||||+||+++.         
T Consensus        83 ~--~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~Dikp~Nil~~~---------  149 (295)
T 3ugc_A           83 A--GRRNLKLIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTK-RYIHRDLATRNILVEN---------  149 (295)
T ss_dssp             H--HHTSCEEEEECCTTCBHHHHHHHCG-GGCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEEE---------
T ss_pred             C--CCCceEEEEEeCCCCCHHHHHHhcc-cccCHHHHHHHHHHHHHHHHHHhcC-CcccCCCCHhhEEEcC---------
Confidence            4  335689999999 889999886543 3489999999999999999999996 9999999999999943         


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                     ...++|+|||++.....
T Consensus       150 ---------------------------------------------------------------~~~~kl~Dfg~~~~~~~  166 (295)
T 3ugc_A          150 ---------------------------------------------------------------ENRVKIGDFGLTKVLPQ  166 (295)
T ss_dssp             ---------------------------------------------------------------TTEEEECCCCSCC----
T ss_pred             ---------------------------------------------------------------CCeEEEccCcccccccC
Confidence                                                                           56799999999975542


Q ss_pred             c------cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh
Q 013220          269 Q------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  342 (447)
Q Consensus       269 ~------~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (447)
                      .      .....++..|+|||.+.+..++.++|||||||++|+|++|..||....           .......+..+...
T Consensus       167 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~-----------~~~~~~~~~~~~~~  235 (295)
T 3ugc_A          167 DKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP-----------AEFMRMIGNDKQGQ  235 (295)
T ss_dssp             ---------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHH-----------HHHHHHHCTTCCTH
T ss_pred             CcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCCh-----------HHHHhhhcCccccc
Confidence            2      122346778999999999999999999999999999999999986431           11111111111000


Q ss_pred             hhCCCCccchhcccchhhhhhhcccCchhHHhh--hhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLV--DKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                      ..      .......+.  .....+...++++.+||.+||+.||++|||++|+++
T Consensus       236 ----------------~~------~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~  284 (295)
T 3ugc_A          236 ----------------MI------VFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLAL  284 (295)
T ss_dssp             ----------------HH------HHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             ----------------hh------HHHHHHHHhccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence                            00      000000111  122345566789999999999999999999999985

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=4.4e-40  Score=315.07  Aligned_cols=246  Identities=23%  Similarity=0.349  Sum_probs=200.1

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      .++|++.++||+|+||+||+|++. ++..||+|+++......+.+.+|+++++.+      .|+||+++++++..    .
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~----~   75 (268)
T 3sxs_A            7 REEITLLKELGSGQFGVVKLGKWK-GQYDVAVKMIKEGSMSEDEFFQEAQTMMKL------SHPKLVKFYGVCSK----E   75 (268)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECBTTBCHHHHHHHHHHHHHC------CCTTBCCEEEEECS----S
T ss_pred             hhheeeeeeeccCCCceEEEEEec-CceeEEEEEeccCCCcHHHHHHHHHHHHhC------CCCCEeeEEEEEcc----C
Confidence            589999999999999999999775 567899999887766667899999999999      78999999999864    3


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ...++||||+ +++|.+++.... ..+++..+..++.|++.||+|||++ ||+||||||+||++                
T Consensus        76 ~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~-~i~H~dikp~Nil~----------------  137 (268)
T 3sxs_A           76 YPIYIVTEYISNGCLLNYLRSHG-KGLEPSQLLEMCYDVCEGMAFLESH-QFIHRDLAARNCLV----------------  137 (268)
T ss_dssp             SSEEEEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHHT-TEEESSCSGGGEEE----------------
T ss_pred             CceEEEEEccCCCcHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCcCcceEEE----------------
Confidence            6799999999 888999886543 3589999999999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc---
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF---  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~---  270 (447)
                                                                              +....++|+|||.+.......   
T Consensus       138 --------------------------------------------------------~~~~~~~l~Dfg~~~~~~~~~~~~  161 (268)
T 3sxs_A          138 --------------------------------------------------------DRDLCVKVSDFGMTRYVLDDQYVS  161 (268)
T ss_dssp             --------------------------------------------------------CTTCCEEECCTTCEEECCTTCEEE
T ss_pred             --------------------------------------------------------CCCCCEEEccCccceecchhhhhc
Confidence                                                                    446679999999997544321   


Q ss_pred             -ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          271 -AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       271 -~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                       ....+|..|+|||.+.+..++.++|||||||++|+|++ |..||...+      .......+..   .           
T Consensus       162 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~------~~~~~~~~~~---~-----------  221 (268)
T 3sxs_A          162 SVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYT------NSEVVLKVSQ---G-----------  221 (268)
T ss_dssp             CCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSC------HHHHHHHHHT---T-----------
T ss_pred             ccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccC------hHHHHHHHHc---C-----------
Confidence             22345677999999998889999999999999999998 999996542      1111111110   0           


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                 .....+...++.+.+||.+||+.||++|||++|++++
T Consensus       222 ---------------------------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~  258 (268)
T 3sxs_A          222 ---------------------------HRLYRPHLASDTIYQIMYSCWHELPEKRPTFQQLLSS  258 (268)
T ss_dssp             ---------------------------CCCCCCTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             ---------------------------CCCCCCCcChHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                                       0011233346689999999999999999999999976

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=5.2e-40  Score=318.30  Aligned_cols=256  Identities=21%  Similarity=0.280  Sum_probs=193.6

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      +++|++.+.||+|+||+||+|++..+++.||+|+...... ...+.+|+++++.+.      |++++..+..+..   .+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~e~~~l~~l~------~~~~i~~~~~~~~---~~   77 (296)
T 4hgt_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK-HPQLHIESKIYKMMQ------GGVGIPTIRWCGA---EG   77 (296)
T ss_dssp             ---CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC----CCCHHHHHHHHHHHT------TSTTCCCEEEEEE---ET
T ss_pred             CCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc-chHHHHHHHHHHHhc------CCCCCCeeeeecC---CC
Confidence            4799999999999999999999999999999998665543 346888999999995      4444444444432   34


Q ss_pred             ceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          115 QHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       115 ~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      ...++||||++++|.+++.... ..+++..+..++.|++.||+|||++ ||+||||||+||++...              
T Consensus        78 ~~~~lv~e~~~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~-~ivH~Dlkp~NIl~~~~--------------  141 (296)
T 4hgt_A           78 DYNVMVMELLGPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIHSK-NFIHRDVKPDNFLMGLG--------------  141 (296)
T ss_dssp             TEEEEEEECCCCBHHHHHHHTT-SCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEECCG--------------
T ss_pred             CceEEEEEccCCCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHeeeecc--------------
Confidence            6899999999999999886433 4589999999999999999999997 99999999999999321              


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-----
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-----  269 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-----  269 (447)
                                                                             +....+||+|||.+......     
T Consensus       142 -------------------------------------------------------~~~~~~kL~Dfg~a~~~~~~~~~~~  166 (296)
T 4hgt_A          142 -------------------------------------------------------KKGNLVYIIDFGLAKKYRDARTHQH  166 (296)
T ss_dssp             -------------------------------------------------------GGTTCEEECCCTTCEECBCTTTCCB
T ss_pred             -------------------------------------------------------CCCCeEEEecCccceeccCcccCcc
Confidence                                                                   23567999999999755432     


Q ss_pred             -----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhh
Q 013220          270 -----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  344 (447)
Q Consensus       270 -----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (447)
                           .....||+.|+|||.+.+..++.++|||||||++|+|++|..||...+....   ...+..+....-..+.    
T Consensus       167 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~---~~~~~~~~~~~~~~~~----  239 (296)
T 4hgt_A          167 IPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATK---RQKYERISEKKMSTPI----  239 (296)
T ss_dssp             CCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSS---SSHHHHHHHHHHHSCH----
T ss_pred             CCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhh---hhhhhhhhcccccchh----
Confidence                 1244789999999999998999999999999999999999999986542211   1111111110000000    


Q ss_pred             CCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          345 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                       .......++.+.+||.+||+.||++|||++++++
T Consensus       240 ---------------------------------~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~  273 (296)
T 4hgt_A          240 ---------------------------------EVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQ  273 (296)
T ss_dssp             ---------------------------------HHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHH
T ss_pred             ---------------------------------hhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence                                             0011234668999999999999999999999985

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=3.9e-40  Score=318.51  Aligned_cols=248  Identities=21%  Similarity=0.309  Sum_probs=205.8

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      .++|++.++||+|+||+||+|.+..++..||+|++..+....+.+.+|+++++.+      .|+||+++++++..    .
T Consensus        12 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~----~   81 (288)
T 3kfa_A           12 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEI------KHPNLVQLLGVCTR----E   81 (288)
T ss_dssp             GGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCSTHHHHHHHHHHHHHHC------CCTTBCCEEEEECS----S
T ss_pred             ccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCHHHHHHHHHHHHHHHhC------CCCCEeeEEEEEcc----C
Confidence            4789999999999999999999999999999999887766678899999999999      78999999999875    3


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ...++||||+ +++|.+++.......+++..+..++.|++.||+|||++ ||+||||||+||++                
T Consensus        82 ~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~-~i~H~dikp~Nil~----------------  144 (288)
T 3kfa_A           82 PPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK-NFIHRDLAARNCLV----------------  144 (288)
T ss_dssp             SSEEEEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHH-TCCCSCCSGGGEEE----------------
T ss_pred             CCEEEEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHC-CccCCCCCcceEEE----------------
Confidence            6799999999 78999998765556689999999999999999999997 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc---
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF---  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~---  270 (447)
                                                                              +....++|+|||.+.......   
T Consensus       145 --------------------------------------------------------~~~~~~~l~Dfg~~~~~~~~~~~~  168 (288)
T 3kfa_A          145 --------------------------------------------------------GENHLVKVADFGLSRLMTGDTYTA  168 (288)
T ss_dssp             --------------------------------------------------------CGGGCEEECCCCGGGTSCSSSSEE
T ss_pred             --------------------------------------------------------cCCCCEEEccCccceeccCCcccc
Confidence                                                                    345679999999997654322   


Q ss_pred             -ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          271 -AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       271 -~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                       ....+|+.|+|||.+.+..++.++|||||||++|+|++ |..||...+      .......+...              
T Consensus       169 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~------~~~~~~~~~~~--------------  228 (288)
T 3kfa_A          169 HAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID------LSQVYELLEKD--------------  228 (288)
T ss_dssp             ETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC------GGGHHHHHHTT--------------
T ss_pred             ccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHhcc--------------
Confidence             22245778999999999999999999999999999999 999997653      11111111100              


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                 .....+...++.+.+||.+||+.||++|||++++++.
T Consensus       229 ---------------------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~  265 (288)
T 3kfa_A          229 ---------------------------YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQA  265 (288)
T ss_dssp             ---------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ---------------------------CCCCCCCCCCHHHHHHHHHHhCCChhhCcCHHHHHHH
Confidence                                       0112334456789999999999999999999999863

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=5.5e-40  Score=316.85  Aligned_cols=248  Identities=19%  Similarity=0.321  Sum_probs=199.0

Q ss_pred             cCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           34 NGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        34 ~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      ..++|++.++||+|+||+||+|.+. ++..||+|+++......+.+.+|+++++.+      .|+||+++++++..    
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~----   90 (283)
T 3gen_A           22 DPKDLTFLKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGSMSEDEFIEEAKVMMNL------SHEKLVQLYGVCTK----   90 (283)
T ss_dssp             CGGGEEEEEECC---CEEEEEEEET-TTEEEEEEEECTTSBCHHHHHHHHHHHHTC------CCTTBCCEEEEECS----
T ss_pred             CHHHHHhHhhcCCCCCceEEEEEEc-CCCeEEEEEecCCCCCHHHHHHHHHHHhcC------CCCCEeeEEEEEec----
Confidence            3479999999999999999999876 677899999987665567889999999999      78999999999874    


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      ....++||||+ +++|.+++.... ..+++..+..++.|++.||+|||++ ||+||||||+||++               
T Consensus        91 ~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~-~i~H~dikp~Nili---------------  153 (283)
T 3gen_A           91 QRPIFIITEYMANGCLLNYLREMR-HRFQTQQLLEMCKDVCEAMEYLESK-QFLHRDLAARNCLV---------------  153 (283)
T ss_dssp             SSSEEEEECCCTTCBHHHHHHCGG-GCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSSCSGGGEEE---------------
T ss_pred             CCCeEEEEeccCCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHHC-CccCCCCccceEEE---------------
Confidence            36799999999 889999886533 4589999999999999999999997 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---  269 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---  269 (447)
                                                                               +....++|+|||.+......   
T Consensus       154 ---------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~  176 (283)
T 3gen_A          154 ---------------------------------------------------------NDQGVVKVSDFGLSRYVLDDEYT  176 (283)
T ss_dssp             ---------------------------------------------------------CTTSCEEECSTTGGGGBCCHHHH
T ss_pred             ---------------------------------------------------------cCCCCEEEccccccccccccccc
Confidence                                                                     34567999999999755432   


Q ss_pred             -cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          270 -FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       270 -~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                       .....+|+.|+|||.+.+..++.++|||||||++|+|++ |..||...+      .......+.+..            
T Consensus       177 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~------~~~~~~~~~~~~------------  238 (283)
T 3gen_A          177 SSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFT------NSETAEHIAQGL------------  238 (283)
T ss_dssp             STTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSC------HHHHHHHHHTTC------------
T ss_pred             cccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccC------hhHHHHHHhccc------------
Confidence             222345778999999999899999999999999999998 999997542      222222111100            


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCc
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP  413 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp  413 (447)
                                                   ....+...++.+.+||.+||+.||++|||++++++|-
T Consensus       239 -----------------------------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L  275 (283)
T 3gen_A          239 -----------------------------RLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNI  275 (283)
T ss_dssp             -----------------------------CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHH
T ss_pred             -----------------------------CCCCCCcCCHHHHHHHHHHccCChhHCcCHHHHHHHH
Confidence                                         0112233466899999999999999999999999863

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=5.7e-40  Score=330.48  Aligned_cols=249  Identities=22%  Similarity=0.359  Sum_probs=200.1

Q ss_pred             CCceEEEEeecccCceEEEEEEeC-------CCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDT-------RTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLID  105 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~-------~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~  105 (447)
                      .++|++.+.||+|+||+||+|++.       .++..||+|+++..  ....+.+.+|+++++.+.     .|+||+++++
T Consensus        80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~hpnIv~~~~  154 (370)
T 2psq_A           80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIG-----KHKNIINLLG  154 (370)
T ss_dssp             GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSC-----CCTTBCCEEE
T ss_pred             HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhc-----CCCCEeeEEE
Confidence            478999999999999999999864       34678999998754  234567899999999995     6899999999


Q ss_pred             cccccCCCcceEEEEEecc-cccHHHHHHhhcc--------------CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccC
Q 013220          106 HFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRY--------------KGLELNKVREICKYILTGLDYLHRELGIIHTDL  170 (447)
Q Consensus       106 ~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~--------------~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Di  170 (447)
                      ++...    ..+|+||||+ +++|.+++.....              ..++...+..++.||+.||+|||++ ||+||||
T Consensus       155 ~~~~~----~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivHrDl  229 (370)
T 2psq_A          155 ACTQD----GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ-KCIHRDL  229 (370)
T ss_dssp             EECSS----SSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCC
T ss_pred             EEccC----CCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC-Ceecccc
Confidence            98753    6799999999 8899998875431              2478889999999999999999997 9999999


Q ss_pred             CCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCC
Q 013220          171 KPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDG  250 (447)
Q Consensus       171 kp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (447)
                      ||+||++                                                                        +
T Consensus       230 kp~NIll------------------------------------------------------------------------~  237 (370)
T 2psq_A          230 AARNVLV------------------------------------------------------------------------T  237 (370)
T ss_dssp             CGGGEEE------------------------------------------------------------------------C
T ss_pred             chhhEEE------------------------------------------------------------------------C
Confidence            9999999                                                                        4


Q ss_pred             cccceeEeecCcccccccc-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCc
Q 013220          251 IDMRCKVVDFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCED  324 (447)
Q Consensus       251 ~~~~~kL~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~  324 (447)
                      .++.+||+|||++......     .....+|+.|+|||++.+..++.++|||||||++|+|++ |..||...+      .
T Consensus       238 ~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~------~  311 (370)
T 2psq_A          238 ENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP------V  311 (370)
T ss_dssp             TTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC------G
T ss_pred             CCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCC------H
Confidence            4567999999999754432     122356789999999999999999999999999999998 999997653      1


Q ss_pred             hHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC
Q 013220          325 EDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP  404 (447)
Q Consensus       325 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp  404 (447)
                      ......+..  +                                       .....+...+..+.+||.+||+.||++||
T Consensus       312 ~~~~~~~~~--~---------------------------------------~~~~~~~~~~~~l~~li~~~l~~dP~~Rp  350 (370)
T 2psq_A          312 EELFKLLKE--G---------------------------------------HRMDKPANCTNELYMMMRDCWHAVPSQRP  350 (370)
T ss_dssp             GGHHHHHHT--T---------------------------------------CCCCCCTTSCHHHHHHHHHHTCSSGGGSC
T ss_pred             HHHHHHHhc--C---------------------------------------CCCCCCCCCCHHHHHHHHHHcCCChhhCc
Confidence            111111100  0                                       01123445677899999999999999999


Q ss_pred             ChHHHhcC
Q 013220          405 TAQQCLQH  412 (447)
Q Consensus       405 ta~elL~h  412 (447)
                      |+.|++++
T Consensus       351 t~~ell~~  358 (370)
T 2psq_A          351 TFKQLVED  358 (370)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            99999875

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=7.9e-40  Score=317.30  Aligned_cols=256  Identities=21%  Similarity=0.285  Sum_probs=197.0

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      +++|++.+.||+|+||+||+|++..+++.||+|++..... ...+.+|+++++.+.      |++++..+..+..   .+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~e~~~l~~l~------~~~~i~~~~~~~~---~~   77 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK-HPQLHIESKIYKMMQ------GGVGIPTIRWCGA---EG   77 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS-CCHHHHHHHHHHHHT------TSTTCCCEEEEEE---ET
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc-hhHHHHHHHHHHHhh------cCCCCCccccccC---CC
Confidence            4799999999999999999999999999999998765433 346889999999995      4444444443332   34


Q ss_pred             ceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          115 QHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       115 ~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      ...++||||++++|.+++.... ..+++..+..++.|++.||+|||++ ||+||||||+||+++..              
T Consensus        78 ~~~~lv~e~~~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~-~ivH~dlkp~NIl~~~~--------------  141 (296)
T 3uzp_A           78 DYNVMVMELLGPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIHSK-NFIHRDVKPDNFLMGLG--------------  141 (296)
T ss_dssp             TEEEEEEECCCCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEECCG--------------
T ss_pred             CceEEEEEecCCCHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHhC-CeeeCCCCHHHeEEecC--------------
Confidence            6899999999999999886433 4599999999999999999999997 99999999999999421              


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-----
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-----  269 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-----  269 (447)
                                                                             +....+||+|||.+......     
T Consensus       142 -------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~~~  166 (296)
T 3uzp_A          142 -------------------------------------------------------KKGNLVYIIDFGLAKKYRDARTHQH  166 (296)
T ss_dssp             -------------------------------------------------------GGTTCEEECCCTTCEECBCTTTCCB
T ss_pred             -------------------------------------------------------CCCCeEEEeeCCCcccccccccccc
Confidence                                                                   23567999999999755432     


Q ss_pred             -----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhh
Q 013220          270 -----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  344 (447)
Q Consensus       270 -----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (447)
                           .....||+.|+|||.+.+..++.++|||||||++|+|++|+.||...+...   .......+....-..+.    
T Consensus       167 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~---~~~~~~~~~~~~~~~~~----  239 (296)
T 3uzp_A          167 IPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAAT---KRQKYERISEKKMSTPI----  239 (296)
T ss_dssp             CCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSS---SSSHHHHHHHHHHHSCH----
T ss_pred             cccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchh---hhhhhhhhcccccCCch----
Confidence                 234478999999999999899999999999999999999999998653221   11111111111000000    


Q ss_pred             CCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          345 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                       .......++.+.+||.+||+.||++|||++++++
T Consensus       240 ---------------------------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~  273 (296)
T 3uzp_A          240 ---------------------------------EVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQ  273 (296)
T ss_dssp             ---------------------------------HHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHH
T ss_pred             ---------------------------------HHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHH
Confidence                                             0011334678999999999999999999999875

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=4.4e-40  Score=327.68  Aligned_cols=271  Identities=16%  Similarity=0.219  Sum_probs=199.3

Q ss_pred             ccccCcccc---CCceEEEEeecccCceEEEEEEeCC---CCeEEEEEEechhHH------------hHHHHHHHHHHHH
Q 013220           26 AVRVGDLFN---GGRYIAQRKLGWGQFSIVWLAYDTR---TSSYVALKIQKSAAQ------------FAQAALHEIEVLS   87 (447)
Q Consensus        26 ~~~~g~~~~---~~~y~l~~~lG~G~~g~Vy~a~~~~---~~~~vaiK~~~~~~~------------~~~~~~~E~~~l~   87 (447)
                      |+..|.++.   +++|++.++||+|+||+||+|++..   ++..||+|+......            ....+.+|+..++
T Consensus        24 ~l~~g~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~  103 (345)
T 2v62_A           24 PFPEGKVLDDMEGNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERK  103 (345)
T ss_dssp             -CCTTCEEECTTSCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             cCCCCCeeccccCceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhc
Confidence            455676664   3799999999999999999999987   788999998764321            1122445666666


Q ss_pred             HhhcCCCCCcceeeeecccccccCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCccc
Q 013220           88 AVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIH  167 (447)
Q Consensus        88 ~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH  167 (447)
                      .+      .|+||+++++++.....+....++||||++++|.+++....  .+++..+..++.||+.||+|||++ ||+|
T Consensus       104 ~l------~h~ni~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~~-~ivH  174 (345)
T 2v62_A          104 QL------DYLGIPLFYGSGLTEFKGRSYRFMVMERLGIDLQKISGQNG--TFKKSTVLQLGIRMLDVLEYIHEN-EYVH  174 (345)
T ss_dssp             TC------SCCCCCCEEEEEEEESSSCEEEEEEEECEEEEHHHHCBGGG--BCCHHHHHHHHHHHHHHHHHHHHT-TEEC
T ss_pred             cc------cccCcceeecccccccCCCcEEEEEEeccCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhC-CeeC
Confidence            66      89999999999987655568999999999889999886543  589999999999999999999997 9999


Q ss_pred             ccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCcc
Q 013220          168 TDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERC  247 (447)
Q Consensus       168 ~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (447)
                      |||||+||++..                                                                    
T Consensus       175 ~Dlkp~NIll~~--------------------------------------------------------------------  186 (345)
T 2v62_A          175 GDIKAANLLLGY--------------------------------------------------------------------  186 (345)
T ss_dssp             SCCSGGGEEEES--------------------------------------------------------------------
T ss_pred             CCcCHHHEEEcc--------------------------------------------------------------------
Confidence            999999999954                                                                    


Q ss_pred             CCCcccceeEeecCcccccccc----------cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCC
Q 013220          248 LDGIDMRCKVVDFGNACRANKQ----------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKS  317 (447)
Q Consensus       248 ~~~~~~~~kL~Dfg~a~~~~~~----------~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~  317 (447)
                        +....+||+|||++......          .....||+.|+|||++.+..++.++|||||||++|+|++|..||....
T Consensus       187 --~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~  264 (345)
T 2v62_A          187 --KNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNL  264 (345)
T ss_dssp             --SSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGT
T ss_pred             --CCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccc
Confidence              11237999999999654321          134478999999999999899999999999999999999999996432


Q ss_pred             CCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccc
Q 013220          318 GQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLD  397 (447)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~  397 (447)
                      .    ................+..+.                                .. .-....+..+.+||.+||+
T Consensus       265 ~----~~~~~~~~~~~~~~~~~~~~~--------------------------------~~-~~~~~~~~~l~~li~~~l~  307 (345)
T 2v62_A          265 K----DPVAVQTAKTNLLDELPQSVL--------------------------------KW-APSGSSCCEIAQFLVCAHS  307 (345)
T ss_dssp             T----CHHHHHHHHHHHHHTTTHHHH--------------------------------HH-SCTTSCCHHHHHHHHHHHT
T ss_pred             c----ccHHHHHHHHhhcccccHHHH--------------------------------hh-ccccccHHHHHHHHHHHhh
Confidence            1    111222222222222222110                                00 0011346689999999999


Q ss_pred             cCCCCCCChHHHhcC
Q 013220          398 FTPEKRPTAQQCLQH  412 (447)
Q Consensus       398 ~dP~kRpta~elL~h  412 (447)
                      .||++|||++++++.
T Consensus       308 ~dp~~Rps~~~l~~~  322 (345)
T 2v62_A          308 LAYDEKPNYQALKKI  322 (345)
T ss_dssp             CCTTCCCCHHHHHHH
T ss_pred             cCcccCCCHHHHHHH
Confidence            999999999999753

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=1.5e-40  Score=320.11  Aligned_cols=256  Identities=22%  Similarity=0.286  Sum_probs=206.9

Q ss_pred             cCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           29 VGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        29 ~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      +|..++ ++|++.+.||+|+||.||+|++..+++.||+|+++...   ..+.+|+++++.+      .|+||+++++++.
T Consensus         5 ~~~~~~-~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~e~~~l~~l------~h~~i~~~~~~~~   74 (284)
T 2a19_B            5 VDKRFG-MDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN---EKAEREVKALAKL------DHVNIVHYNGCWD   74 (284)
T ss_dssp             CCHHHH-HHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS---GGGHHHHHHHHHC------CCTTBCCEEEEEE
T ss_pred             ccchhc-cccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc---HHHHHHHHHHHhC------CCCCEEEEeeeEe
Confidence            355554 78999999999999999999999899999999887543   3567899999999      7899999999875


Q ss_pred             ccC------------CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCe
Q 013220          109 HAG------------PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENI  175 (447)
Q Consensus       109 ~~~------------~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Ni  175 (447)
                      ...            ......++||||+ +++|.+++.......+++..+..++.|++.||+|||++ ||+|+||||+||
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~i~H~dlkp~Ni  153 (284)
T 2a19_B           75 GFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSK-KLINRDLKPSNI  153 (284)
T ss_dssp             EEEEC---------CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGE
T ss_pred             ccccCcccccccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhC-CeeeccCCHHHE
Confidence            411            1245799999999 77999998765556699999999999999999999997 999999999999


Q ss_pred             EeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccce
Q 013220          176 LLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRC  255 (447)
Q Consensus       176 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (447)
                      ++..                                                                        ...+
T Consensus       154 l~~~------------------------------------------------------------------------~~~~  161 (284)
T 2a19_B          154 FLVD------------------------------------------------------------------------TKQV  161 (284)
T ss_dssp             EEEE------------------------------------------------------------------------TTEE
T ss_pred             EEcC------------------------------------------------------------------------CCCE
Confidence            9943                                                                        5679


Q ss_pred             eEeecCcccccccc--cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHH
Q 013220          256 KVVDFGNACRANKQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMME  333 (447)
Q Consensus       256 kL~Dfg~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~  333 (447)
                      +|+|||.+......  .....+++.|+|||.+.+..++.++|||||||++|+|++|..||...         .   ....
T Consensus       162 kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~---------~---~~~~  229 (284)
T 2a19_B          162 KIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFET---------S---KFFT  229 (284)
T ss_dssp             EECCCTTCEESSCCSCCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH---------H---HHHH
T ss_pred             EECcchhheeccccccccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhH---------H---HHHH
Confidence            99999998765432  33457899999999999989999999999999999999998887321         0   0000


Q ss_pred             HhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCc
Q 013220          334 LIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP  413 (447)
Q Consensus       334 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp  413 (447)
                      .+                                        ....++...+..+.+||.+||+.||++|||+.|+++|+
T Consensus       230 ~~----------------------------------------~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l  269 (284)
T 2a19_B          230 DL----------------------------------------RDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTL  269 (284)
T ss_dssp             HH----------------------------------------HTTCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             Hh----------------------------------------hcccccccCCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence            00                                        00012233456788999999999999999999999999


Q ss_pred             cccccc
Q 013220          414 WLSLRN  419 (447)
Q Consensus       414 ~f~~~~  419 (447)
                      |.-...
T Consensus       270 ~~~~~~  275 (284)
T 2a19_B          270 TVWKKS  275 (284)
T ss_dssp             HHHTC-
T ss_pred             HHHhhC
Confidence            876543

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=5.2e-40  Score=324.78  Aligned_cols=253  Identities=20%  Similarity=0.313  Sum_probs=196.7

Q ss_pred             ccCccccCCceEEEEeecccCceEEEEEEeCCCCeE----EEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceee
Q 013220           28 RVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSY----VALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVI  101 (447)
Q Consensus        28 ~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~----vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv  101 (447)
                      .+.+++..++|++.+.||+|+||+||+|++..+++.    ||+|.+....  ...+.+.+|+++++.+      +|+||+
T Consensus         7 ~~~~~l~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv   80 (327)
T 3poz_A            7 ALLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV------DNPHVC   80 (327)
T ss_dssp             CSSEECCGGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHC------CBTTBC
T ss_pred             HHHhhcCHHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhC------CCCCEe
Confidence            345677778999999999999999999998877665    4777664332  3456788999999999      789999


Q ss_pred             eecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeec
Q 013220          102 RLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVST  180 (447)
Q Consensus       102 ~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~  180 (447)
                      ++++++...     ..++||||+ +++|.+.+.... ..+++..+..++.|++.||+|||++ ||+||||||+||++.. 
T Consensus        81 ~~~~~~~~~-----~~~~v~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~-~ivH~Dikp~NIll~~-  152 (327)
T 3poz_A           81 RLLGICLTS-----TVQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEDR-RLVHRDLAARNVLVKT-  152 (327)
T ss_dssp             CEEEEEESS-----SEEEEEECCTTCBHHHHHHHST-TSCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEEE-
T ss_pred             EEEEEEecC-----CeEEEEEecCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhhC-CeeCCCCChheEEECC-
Confidence            999998753     477899999 889998886533 4589999999999999999999997 9999999999999943 


Q ss_pred             CCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeec
Q 013220          181 IDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDF  260 (447)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Df  260 (447)
                                                                                             .+.+||+||
T Consensus       153 -----------------------------------------------------------------------~~~~kl~Df  161 (327)
T 3poz_A          153 -----------------------------------------------------------------------PQHVKITDF  161 (327)
T ss_dssp             -----------------------------------------------------------------------TTEEEECCT
T ss_pred             -----------------------------------------------------------------------CCCEEEccC
Confidence                                                                                   567999999


Q ss_pred             Cccccccccc-----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHH
Q 013220          261 GNACRANKQF-----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMEL  334 (447)
Q Consensus       261 g~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~  334 (447)
                      |++.......     ....+|..|+|||.+.+..++.++|||||||++|+|++ |..||...+      .. .+......
T Consensus       162 g~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~------~~-~~~~~~~~  234 (327)
T 3poz_A          162 GLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP------AS-EISSILEK  234 (327)
T ss_dssp             THHHHHTTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC------GG-GHHHHHHT
T ss_pred             cceeEccCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCC------HH-HHHHHHHc
Confidence            9997554321     22345789999999999999999999999999999999 999997653      11 11111110


Q ss_pred             hCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          335 IGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       335 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                      .                                        .....+...+..+.+||.+||+.||++|||+.|++++
T Consensus       235 ~----------------------------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~  272 (327)
T 3poz_A          235 G----------------------------------------ERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE  272 (327)
T ss_dssp             T----------------------------------------CCCCCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHH
T ss_pred             C----------------------------------------CCCCCCccCCHHHHHHHHHHcCCChhhCCCHHHHHHH
Confidence            0                                        0112334456789999999999999999999999976

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.4e-40  Score=327.78  Aligned_cols=269  Identities=15%  Similarity=0.192  Sum_probs=201.8

Q ss_pred             cccccCcccc---CCceEEEEeecccCceEEEEEEeCC--------CCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCC
Q 013220           25 HAVRVGDLFN---GGRYIAQRKLGWGQFSIVWLAYDTR--------TSSYVALKIQKSAAQFAQAALHEIEVLSAVADGD   93 (447)
Q Consensus        25 ~~~~~g~~~~---~~~y~l~~~lG~G~~g~Vy~a~~~~--------~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~   93 (447)
                      .++..|+++.   +++|++.+.||+|+||+||+|++..        .++.||+|++...    ..+.+|+++++.+    
T Consensus        28 ~~l~~g~~i~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~----~~~~~E~~~l~~l----   99 (352)
T 2jii_A           28 EALPTGTVLTDKSGRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD----GRLFNEQNFFQRA----   99 (352)
T ss_dssp             CCCCTTCEEECTTSCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT----STHHHHHHHHHHH----
T ss_pred             hhCCCCceeecccCCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc----chHHHHHHHHHHh----
Confidence            3667788884   4799999999999999999999887        4889999998755    4588999999999    


Q ss_pred             CCCcceeeeeccccccc-----------C-CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh
Q 013220           94 PSNEKCVIRLIDHFKHA-----------G-PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR  161 (447)
Q Consensus        94 ~~~~~~Iv~~~~~~~~~-----------~-~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~  161 (447)
                        .|+||++++..+...           + ......++||||++++|.+++.......+++..+..++.||+.||+|||+
T Consensus       100 --~h~niv~~~~~~~~~~~~~i~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~  177 (352)
T 2jii_A          100 --AKPLQVNKWKKLYSTPLLAIPTCMGFGVHQDKYRFLVLPSLGRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHE  177 (352)
T ss_dssp             --CCHHHHHHHHHHTTCTTCSCCCCCEEEEETTTEEEEEEECCCEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             --cccchhhhhhhhccCCccCccchhhccccCCcEEEEEecCCCcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence              677777744332210           0 02468999999999999999976544569999999999999999999999


Q ss_pred             hCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCC
Q 013220          162 ELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIEL  241 (447)
Q Consensus       162 ~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (447)
                      + ||+||||||+||++..                                                              
T Consensus       178 ~-~ivH~Dikp~NIl~~~--------------------------------------------------------------  194 (352)
T 2jii_A          178 N-EYVHGNVTAENIFVDP--------------------------------------------------------------  194 (352)
T ss_dssp             T-TCBCSCCCGGGEEEET--------------------------------------------------------------
T ss_pred             C-CccCCCCCHHHEEEcC--------------------------------------------------------------
Confidence            7 9999999999999943                                                              


Q ss_pred             CCCCccCCCcccceeEeecCcccccccc----------cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCC
Q 013220          242 PKPERCLDGIDMRCKVVDFGNACRANKQ----------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDM  311 (447)
Q Consensus       242 ~~~~~~~~~~~~~~kL~Dfg~a~~~~~~----------~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~  311 (447)
                              +....++|+|||++......          .....||+.|+|||.+.+..++.++|||||||++|+|++|..
T Consensus       195 --------~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~  266 (352)
T 2jii_A          195 --------EDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFL  266 (352)
T ss_dssp             --------TEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCC
T ss_pred             --------CCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCC
Confidence                    11237999999999654321          123478999999999999899999999999999999999999


Q ss_pred             CCCCCCCCCCCCchHHHHHHHH-HhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHH
Q 013220          312 LFAPKSGQGFCEDEDHLALMME-LIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAE  390 (447)
Q Consensus       312 Pf~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  390 (447)
                      ||.....     ....+..... .....+. +.                                .........+..+.+
T Consensus       267 pf~~~~~-----~~~~~~~~~~~~~~~~~~-~~--------------------------------~~~~~~~~~~~~l~~  308 (352)
T 2jii_A          267 PWTNCLP-----NTEDIMKQKQKFVDKPGP-FV--------------------------------GPCGHWIRPSETLQK  308 (352)
T ss_dssp             TTGGGTT-----CHHHHHHHHHHHHHSCCC-EE--------------------------------CTTSCEECCCHHHHH
T ss_pred             CcccCCc-----CHHHHHHHHHhccCChhh-hh--------------------------------hhccccCCCcHHHHH
Confidence            9975421     1112221111 1111100 00                                000001123678999


Q ss_pred             HHhhccccCCCCCCChHHHhcC
Q 013220          391 FLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       391 ll~~~L~~dP~kRpta~elL~h  412 (447)
                      ||.+||+.||++|||++++++.
T Consensus       309 li~~~l~~dp~~Rps~~~l~~~  330 (352)
T 2jii_A          309 YLKVVMALTYEEKPPYAMLRNN  330 (352)
T ss_dssp             HHHHHHTCCTTCCCCHHHHHHH
T ss_pred             HHHHHHhCChhhCCCHHHHHHH
Confidence            9999999999999999999753

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=8.5e-40  Score=313.32  Aligned_cols=252  Identities=25%  Similarity=0.366  Sum_probs=189.6

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      .++|++.+.||+|+||+||+|++.  +..||+|+++...     ...+.+.+|+++++.+      .|+||+++++++..
T Consensus         6 ~~~~~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~   77 (271)
T 3dtc_A            6 FAELTLEEIIGIGGFGKVYRAFWI--GDEVAVKAARHDPDEDISQTIENVRQEAKLFAML------KHPNIIALRGVCLK   77 (271)
T ss_dssp             TTSEEEEEEEEEETTEEEEEEEET--TEEEEEEEC----------CHHHHHHHHHHHHHC------CCTTBCCEEEEECC
T ss_pred             hhheeeeeeeccCCCeEEEEEEEc--CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhc------CCCCEeeEEEEEec
Confidence            478999999999999999999874  7899999876543     2246788999999999      78999999999875


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCC---cccccCCCCCeEeeecCCCCC
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELG---IIHTDLKPENILLVSTIDPSK  185 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~g---IiH~Dikp~Nill~~~~~~~~  185 (447)
                      .    ...++||||+ +++|.+++..   ..+++..+..++.|++.||+|||++ |   |+||||||+||++......  
T Consensus        78 ~----~~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~i~~~l~~~l~~lH~~-~~~~i~H~dikp~Nil~~~~~~~--  147 (271)
T 3dtc_A           78 E----PNLCLVMEFARGGPLNRVLSG---KRIPPDILVNWAVQIARGMNYLHDE-AIVPIIHRDLKSSNILILQKVEN--  147 (271)
T ss_dssp             C------CEEEEECCTTEEHHHHHTS---SCCCHHHHHHHHHHHHHHHHHHHHS-SSSCCCCSCCSGGGEEESSCCSS--
T ss_pred             C----CceEEEEEcCCCCCHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHhC-CCCceeecCCchHHEEEeccccc--
Confidence            3    6789999999 8889887742   4589999999999999999999996 8   8999999999999542100  


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccc
Q 013220          186 DPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR  265 (447)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~  265 (447)
                                                                                    .+.....++|+|||.+..
T Consensus       148 --------------------------------------------------------------~~~~~~~~kl~Dfg~~~~  165 (271)
T 3dtc_A          148 --------------------------------------------------------------GDLSNKILKITDFGLARE  165 (271)
T ss_dssp             --------------------------------------------------------------SCCSSCCEEECCCCC---
T ss_pred             --------------------------------------------------------------ccccCcceEEccCCcccc
Confidence                                                                          001256799999999975


Q ss_pred             cccc-cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhh
Q 013220          266 ANKQ-FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  344 (447)
Q Consensus       266 ~~~~-~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (447)
                      .... .....||+.|+|||.+.+..++.++|||||||++|+|++|..||...+      .......+.  .+.       
T Consensus       166 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~------~~~~~~~~~--~~~-------  230 (271)
T 3dtc_A          166 WHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGID------GLAVAYGVA--MNK-------  230 (271)
T ss_dssp             ----------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSC------HHHHHHHHH--TSC-------
T ss_pred             cccccccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHhhh--cCC-------
Confidence            5433 234578999999999999999999999999999999999999997542      111111100  000       


Q ss_pred             CCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          345 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                     .....+...++.+.+||.+||+.||++|||+.|++++
T Consensus       231 -------------------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~  267 (271)
T 3dtc_A          231 -------------------------------LALPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQ  267 (271)
T ss_dssp             -------------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -------------------------------CCCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHHHH
Confidence                                           0112344557789999999999999999999999875

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=100.00  E-value=9.2e-40  Score=318.63  Aligned_cols=251  Identities=26%  Similarity=0.415  Sum_probs=194.5

Q ss_pred             cccccCccccCCceEEE-EeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeee
Q 013220           25 HAVRVGDLFNGGRYIAQ-RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRL  103 (447)
Q Consensus        25 ~~~~~g~~~~~~~y~l~-~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~  103 (447)
                      .++..|++++  +|.+. +.||+|+||.||+|.+..+++.||+|+++..    ....+|++++..+.     .|+||+++
T Consensus         8 ~~~~~~~~~~--~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~----~~~~~e~~~~~~~~-----~h~~i~~~   76 (299)
T 3m2w_A            8 LQIKKNAIID--DYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC----PKARREVELHWRAS-----QCPHIVRI   76 (299)
T ss_dssp             CCCBCSCGGG--TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS----HHHHHHHHHHHHHT-----TSTTBCCE
T ss_pred             ccCccccccc--chhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc----HHHHHHHHHHHHhc-----cCCCchhH
Confidence            3456778874  57776 7799999999999999999999999998754    34678888885553     89999999


Q ss_pred             cccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCC
Q 013220          104 IDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTID  182 (447)
Q Consensus       104 ~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~  182 (447)
                      ++++.....+....++||||+ +++|.+++.......+++..+..++.|++.||+|||++ ||+||||||+||++...  
T Consensus        77 ~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~i~H~dlkp~Nil~~~~--  153 (299)
T 3m2w_A           77 VDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI-NIAHRDVKPENLLYTSK--  153 (299)
T ss_dssp             EEEEEEEETTEEEEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEESSS--
T ss_pred             HhhhhhhcCCCceEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCHHHEEEecC--
Confidence            999886544567899999999 78999998765545699999999999999999999996 99999999999999431  


Q ss_pred             CCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCc
Q 013220          183 PSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGN  262 (447)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~  262 (447)
                                                                                         .....++|+|||+
T Consensus       154 -------------------------------------------------------------------~~~~~~kl~Dfg~  166 (299)
T 3m2w_A          154 -------------------------------------------------------------------RPNAILKLTDFGF  166 (299)
T ss_dssp             -------------------------------------------------------------------STTCCEEECCCTT
T ss_pred             -------------------------------------------------------------------CCCCcEEEecccc
Confidence                                                                               1246799999999


Q ss_pred             ccccccccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh
Q 013220          263 ACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  342 (447)
Q Consensus       263 a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (447)
                      +....                   +..++.++|||||||++|+|++|..||........             ....... 
T Consensus       167 a~~~~-------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~-------------~~~~~~~-  213 (299)
T 3m2w_A          167 AKETT-------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI-------------SPGMKTR-  213 (299)
T ss_dssp             CEECT-------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC--------------------CCSCCS-
T ss_pred             ccccc-------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhh-------------hHHHHHH-
Confidence            85432                   23467899999999999999999999976532110             0000000 


Q ss_pred             hhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCC----hhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFS----ETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                                                    +......++    ...+.++.+||.+||+.||++|||++|+|+||||+..
T Consensus       214 ------------------------------~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~hp~~~~~  263 (299)
T 3m2w_A          214 ------------------------------IRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQS  263 (299)
T ss_dssp             ------------------------------SCTTCCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHTG
T ss_pred             ------------------------------HhhccccCCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhcChhhccc
Confidence                                          000000111    2346789999999999999999999999999999875


Q ss_pred             c
Q 013220          419 N  419 (447)
Q Consensus       419 ~  419 (447)
                      .
T Consensus       264 ~  264 (299)
T 3m2w_A          264 T  264 (299)
T ss_dssp             G
T ss_pred             c
Confidence            4

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6.1e-40  Score=323.94  Aligned_cols=278  Identities=19%  Similarity=0.275  Sum_probs=206.0

Q ss_pred             cccCCCCCCCccccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCC
Q 013220           14 EGIDSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGD   93 (447)
Q Consensus        14 ~~~~~~~~~~~~~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~   93 (447)
                      +....+..+.+.|+.++..+. ++|++.++||+|+||+||+|++.  ++.||+|++.....  .....|.+++..+.   
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~~~--~~~~~e~~~~~~~~---   87 (337)
T 3mdy_A           16 EQSQSSGSGSGLPLLVQRTIA-KQIQMVKQIGKGRYGEVWMGKWR--GEKVAVKVFFTTEE--ASWFRETEIYQTVL---   87 (337)
T ss_dssp             HHHHHHCSCSSSCHHHHTTHH-HHCEEEEEEEEETTEEEEEEEET--TEEEEEEEEEGGGH--HHHHHHHHHHTSTT---
T ss_pred             cccccCCCCCCCCcccccccc-cceEEEeEeecCCCeEEEEEEEC--CceEEEEEEecccc--chhhhHHHHHHHHh---
Confidence            334456667788888888886 79999999999999999999875  89999998875543  34455655555542   


Q ss_pred             CCCcceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhC--------C
Q 013220           94 PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHREL--------G  164 (447)
Q Consensus        94 ~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~--------g  164 (447)
                       ..|+||+++++++..........++||||+ +++|.+++...   .+++..+..++.|++.||+|||+ .        |
T Consensus        88 -~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH~-~~~~~~~~~~  162 (337)
T 3mdy_A           88 -MRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKST---TLDAKSMLKLAYSSVSGLCHLHT-EIFSTQGKPA  162 (337)
T ss_dssp             -CCCTTBCCEEEEEEESCGGGCEEEEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHS-CBCSTTCBCC
T ss_pred             -hcCCCeeeEEEEEccCCCCCCceEEEEeccCCCcHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHH-hhhhhccCCC
Confidence             279999999999887644447899999999 78999998643   48999999999999999999998 5        9


Q ss_pred             cccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCC
Q 013220          165 IIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKP  244 (447)
Q Consensus       165 IiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (447)
                      |+||||||+||++                                                                   
T Consensus       163 ivH~Dikp~Nill-------------------------------------------------------------------  175 (337)
T 3mdy_A          163 IAHRDLKSKNILV-------------------------------------------------------------------  175 (337)
T ss_dssp             EECSCCCGGGEEE-------------------------------------------------------------------
T ss_pred             EEecccchHHEEE-------------------------------------------------------------------
Confidence            9999999999999                                                                   


Q ss_pred             CccCCCcccceeEeecCcccccccc-------cccCCCCCCccChHHhhcCCCCcc------chhHhHHHHHHHHhhC--
Q 013220          245 ERCLDGIDMRCKVVDFGNACRANKQ-------FAEEIQTRQYRAPEVILRAGYSFS------VDMWSFACTAFELATG--  309 (447)
Q Consensus       245 ~~~~~~~~~~~kL~Dfg~a~~~~~~-------~~~~~gt~~y~aPE~l~~~~~~~~------~DiwSlGvil~~l~~g--  309 (447)
                           +....+||+|||++......       ....+||+.|+|||++.+..++..      +|||||||++|+|++|  
T Consensus       176 -----~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~  250 (337)
T 3mdy_A          176 -----KKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCV  250 (337)
T ss_dssp             -----CTTSCEEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred             -----CCCCCEEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccC
Confidence                 34567999999999654322       124578999999999987766554      9999999999999999  


Q ss_pred             --------CCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCC
Q 013220          310 --------DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFS  381 (447)
Q Consensus       310 --------~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (447)
                              ..||.......  .....+.......+..+.                             ...     ...+
T Consensus       251 ~~~~~~~~~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~-----------------------------~~~-----~~~~  294 (337)
T 3mdy_A          251 SGGIVEEYQLPYHDLVPSD--PSYEDMREIVCIKKLRPS-----------------------------FPN-----RWSS  294 (337)
T ss_dssp             BTTBCCCCCCTTTTTSCSS--CCHHHHHHHHTTSCCCCC-----------------------------CCG-----GGGG
T ss_pred             cccccccccccHhhhcCCC--CchhhhHHHHhhhccCcc-----------------------------ccc-----cchh
Confidence                    45554332111  011111111100000000                             000     0011


Q ss_pred             hhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          382 ETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       382 ~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                      ...++++.+||.+||+.||++|||++|+++|
T Consensus       295 ~~~~~~l~~li~~~l~~dP~~Rps~~ell~~  325 (337)
T 3mdy_A          295 DECLRQMGKLMTECWAHNPASRLTALRVKKT  325 (337)
T ss_dssp             SHHHHHHHHHHHHHSCSSGGGSCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhhhChhhCCCHHHHHHH
Confidence            2567889999999999999999999999976

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=4.5e-40  Score=324.77  Aligned_cols=253  Identities=22%  Similarity=0.283  Sum_probs=199.4

Q ss_pred             ccCccccCCceEEEEeecccCceEEEEEEeCCCCeE----EEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceee
Q 013220           28 RVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSY----VALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVI  101 (447)
Q Consensus        28 ~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~----vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv  101 (447)
                      .+++++..++|++.+.||+|+||+||+|++..++..    ||+|.+....  .....+.+|+.+++.+      .|+||+
T Consensus         5 ~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv   78 (325)
T 3kex_A            5 VLARIFKETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSL------DHAHIV   78 (325)
T ss_dssp             CCCCBCCTTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTC------CCTTBC
T ss_pred             HHHhhcCHhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcC------CCCCcC
Confidence            356778789999999999999999999998887766    6777654332  2234677899999988      899999


Q ss_pred             eecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeec
Q 013220          102 RLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVST  180 (447)
Q Consensus       102 ~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~  180 (447)
                      ++++++..     ...++||||+ +++|.+.+.... ..+++..+..++.|++.||+|||++ ||+||||||+||++   
T Consensus        79 ~~~~~~~~-----~~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~Dikp~Nil~---  148 (325)
T 3kex_A           79 RLLGLCPG-----SSLQLVTQYLPLGSLLDHVRQHR-GALGPQLLLNWGVQIAKGMYYLEEH-GMVHRNLAARNVLL---  148 (325)
T ss_dssp             CEEEEECB-----SSEEEEEECCTTCBSHHHHHSSG-GGSCTTHHHHHHHHHHHHHHHHHHT-TCCCSCCSSTTEEE---
T ss_pred             eEEEEEcC-----CccEEEEEeCCCCCHHHHHHHcc-ccCCHHHHHHHHHHHHHHHHHHHhC-CCCCCccchheEEE---
Confidence            99998753     4689999999 889988886532 3588999999999999999999997 99999999999999   


Q ss_pred             CCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeec
Q 013220          181 IDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDF  260 (447)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Df  260 (447)
                                                                                           +..+.++|+||
T Consensus       149 ---------------------------------------------------------------------~~~~~~kl~Df  159 (325)
T 3kex_A          149 ---------------------------------------------------------------------KSPSQVQVADF  159 (325)
T ss_dssp             ---------------------------------------------------------------------SSSSCEEECSC
T ss_pred             ---------------------------------------------------------------------CCCCeEEECCC
Confidence                                                                                 44567999999


Q ss_pred             Cccccccccc-----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHH
Q 013220          261 GNACRANKQF-----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMEL  334 (447)
Q Consensus       261 g~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~  334 (447)
                      |++.......     ....+|..|+|||.+.+..++.++|||||||++|+|++ |..||.....      ......+.. 
T Consensus       160 g~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~------~~~~~~~~~-  232 (325)
T 3kex_A          160 GVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRL------AEVPDLLEK-  232 (325)
T ss_dssp             SGGGGSCCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCT------THHHHHHHT-
T ss_pred             CcccccCcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCH------HHHHHHHHc-
Confidence            9997654321     23357789999999999999999999999999999999 9999976531      111111110 


Q ss_pred             hCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          335 IGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       335 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                      .                                        .....+...+..+.+||.+||+.||++|||+++++++
T Consensus       233 ~----------------------------------------~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~  270 (325)
T 3kex_A          233 G----------------------------------------ERLAQPQICTIDVYMVMVKCWMIDENIRPTFKELANE  270 (325)
T ss_dssp             T----------------------------------------CBCCCCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHH
T ss_pred             C----------------------------------------CCCCCCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            0                                        0111233345578899999999999999999999976

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=100.00  E-value=6.4e-41  Score=357.96  Aligned_cols=297  Identities=25%  Similarity=0.331  Sum_probs=207.7

Q ss_pred             CCCccccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcc
Q 013220           21 KGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEK   98 (447)
Q Consensus        21 ~~~~~~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~   98 (447)
                      +|+|+|...|..+  ++|++.++||+|+||+||+|++..+++.||||++...  ....+.+.+|+++++.+      +|+
T Consensus         1 GGG~~p~~pg~~~--grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L------~Hp   72 (676)
T 3qa8_A            1 GGGRSPSLPTQTC--GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKL------NHP   72 (676)
T ss_dssp             ------------------CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHC------CBT
T ss_pred             CCCCCCCCCCCCC--CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhC------CCC
Confidence            4789999999998  6899999999999999999999999999999987643  34456788999999999      799


Q ss_pred             eeeeecccccccC--CCcceEEEEEecc-cccHHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCC
Q 013220           99 CVIRLIDHFKHAG--PNGQHLCMVLEFL-GDSLLRLIKYSR-YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPEN  174 (447)
Q Consensus        99 ~Iv~~~~~~~~~~--~~~~~~~lvmE~~-~~~L~~~~~~~~-~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~N  174 (447)
                      ||+++++++....  ..+...++||||| +++|.+++.... ...+++..+..++.|++.||+|||+. ||+||||||+|
T Consensus        73 nIV~l~~v~~~~~~~~~~~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~-gIVHrDLKP~N  151 (676)
T 3qa8_A           73 NVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHEN-RIIHRDLKPEN  151 (676)
T ss_dssp             TBCCEEECCTTTCCCCTTSSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHT-TBCCCCCCSTT
T ss_pred             CCCceeeeecccccccCCCeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC-CCccCCCCHHH
Confidence            9999999876522  1256789999999 889999887533 23588999999999999999999996 99999999999


Q ss_pred             eEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccc
Q 013220          175 ILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMR  254 (447)
Q Consensus       175 ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (447)
                      |++...                                                                     .....
T Consensus       152 ILl~~~---------------------------------------------------------------------g~~~~  162 (676)
T 3qa8_A          152 IVLQPG---------------------------------------------------------------------PQRLI  162 (676)
T ss_dssp             EEEECC---------------------------------------------------------------------SSSCE
T ss_pred             eEeecC---------------------------------------------------------------------CCcee
Confidence            999542                                                                     22346


Q ss_pred             eeEeecCcccccccc--cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHH
Q 013220          255 CKVVDFGNACRANKQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMM  332 (447)
Q Consensus       255 ~kL~Dfg~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~  332 (447)
                      ++|+|||.+......  .....||+.|+|||.+.+..++.++|||||||++|+|++|..||....      ..      .
T Consensus       163 vKL~DFG~a~~~~~~~~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~------~~------~  230 (676)
T 3qa8_A          163 HKIIDLGYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNW------QP------V  230 (676)
T ss_dssp             EEECSCCCCCBTTSCCCCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSC------HH------H
T ss_pred             EEEcccccccccccccccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCccc------ch------h
Confidence            899999999765433  334578999999999998899999999999999999999999997531      00      0


Q ss_pred             HHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          333 ELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       333 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                      ...+.....-    ......++....  .      ..+.........+....++.+.+||.+||+.||++|||++|+|+|
T Consensus       231 ~~~~~i~~~~----~~~~~~~~~l~g--~------~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL~h  298 (676)
T 3qa8_A          231 QWHGKVREKS----NEHIVVYDDLTG--A------VKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNV  298 (676)
T ss_dssp             HSSTTCC----------CCSCCCCSS--S------CCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCCCC
T ss_pred             hhhhhhhccc----chhhhhhhhhcc--c------cccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHhcC
Confidence            0000000000    000000000000  0      000001111123455678999999999999999999999999999


Q ss_pred             ccccccc
Q 013220          413 PWLSLRN  419 (447)
Q Consensus       413 p~f~~~~  419 (447)
                      |||+...
T Consensus       299 p~F~~l~  305 (676)
T 3qa8_A          299 GCFQALD  305 (676)
T ss_dssp             TTHHHHH
T ss_pred             HHHHHHH
Confidence            9999754

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=1.9e-40  Score=327.19  Aligned_cols=262  Identities=23%  Similarity=0.355  Sum_probs=182.0

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHH-HHHHhhcCCCCCcceeeeecccccccC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIE-VLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~-~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      .++|++.+.||+|+||.||+|.+..+++.||||+++...  .....+..|+. +++.+      .|+||+++++++... 
T Consensus        21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~------~h~niv~~~~~~~~~-   93 (327)
T 3aln_A           21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSS------DCPYIVQFYGALFRE-   93 (327)
T ss_dssp             SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSC------CCTTBCCEEEEEECS-
T ss_pred             HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcC------CCCcEeeeeeEEEeC-
Confidence            478999999999999999999999999999999886532  22334555555 44334      899999999998853 


Q ss_pred             CCcceEEEEEecccccHHHHHHhh---ccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          112 PNGQHLCMVLEFLGDSLLRLIKYS---RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       112 ~~~~~~~lvmE~~~~~L~~~~~~~---~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                         ...++||||+.++|.+++...   ....+++..+..++.|++.||.|||++.||+||||||+||+++          
T Consensus        94 ---~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~ivH~dlkp~NIll~----------  160 (327)
T 3aln_A           94 ---GDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLD----------  160 (327)
T ss_dssp             ---SEEEEEECCCSEEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHSCCCSCCCGGGEEEE----------
T ss_pred             ---CceEEEEeecCCChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCCEeECCCCHHHEEEc----------
Confidence               689999999977887776531   2356899999999999999999999944999999999999993          


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                    ..+.+||+|||++.....
T Consensus       161 --------------------------------------------------------------~~~~~kl~Dfg~~~~~~~  178 (327)
T 3aln_A          161 --------------------------------------------------------------RSGNIKLCDFGISGQLVD  178 (327)
T ss_dssp             --------------------------------------------------------------TTTEEEECCCSSSCC---
T ss_pred             --------------------------------------------------------------CCCCEEEccCCCceeccc
Confidence                                                                          356799999999976543


Q ss_pred             c--cccCCCCCCccChHHh----hcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh
Q 013220          269 Q--FAEEIQTRQYRAPEVI----LRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  342 (447)
Q Consensus       269 ~--~~~~~gt~~y~aPE~l----~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (447)
                      .  .....||+.|+|||.+    .+..++.++|||||||++|+|++|..||......        ...+.......+.. 
T Consensus       179 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--------~~~~~~~~~~~~~~-  249 (327)
T 3aln_A          179 SIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSV--------FDQLTQVVKGDPPQ-  249 (327)
T ss_dssp             ---------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC---------------CCCCCSCCCC-
T ss_pred             ccccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchH--------HHHHHHHhcCCCCC-
Confidence            2  2234789999999998    4556899999999999999999999999754210        00000000000000 


Q ss_pred             hhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccC
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~  420 (447)
                                                 +      ........+..+.+||.+||+.||++|||+.|+++||||.....
T Consensus       250 ---------------------------~------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~hp~~~~~~~  294 (327)
T 3aln_A          250 ---------------------------L------SNSEEREFSPSFINFVNLCLTKDESKRPKYKELLKHPFILMYEE  294 (327)
T ss_dssp             ---------------------------C------CCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHHHH
T ss_pred             ---------------------------C------CCcccccCCHHHHHHHHHHhhCChhhCcCHHHHHhChHHHHhHh
Confidence                                       0      00011234668999999999999999999999999999986543

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=1.2e-39  Score=314.54  Aligned_cols=246  Identities=19%  Similarity=0.288  Sum_probs=189.1

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCC---CeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRT---SSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~---~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      .++|++.+.||+|+||+||+|++..+   +..||+|+.+..  ....+.+.+|+.+++.+      .|+||+++++++..
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~   87 (281)
T 1mp8_A           14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQF------DHPHIVKLIGVITE   87 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTC------CCTTBCCEEEEECS
T ss_pred             hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhC------CCCccceEEEEEcc
Confidence            47999999999999999999988653   567999987643  33456788999999998      78999999998743


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                           ...++||||+ +++|.+++.... ..+++..+..++.|++.||+|||++ ||+||||||+||++..         
T Consensus        88 -----~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~Nil~~~---------  151 (281)
T 1mp8_A           88 -----NPVWIIMELCTLGELRSFLQVRK-YSLDLASLILYAYQLSTALAYLESK-RFVHRDIAARNVLVSS---------  151 (281)
T ss_dssp             -----SSCEEEEECCTTEEHHHHHHHTT-TTSCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEEE---------
T ss_pred             -----CccEEEEecCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhC-CeecccccHHHEEECC---------
Confidence                 4688999999 789999886543 3589999999999999999999996 9999999999999943         


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                     ...++|+|||++.....
T Consensus       152 ---------------------------------------------------------------~~~~kl~Dfg~~~~~~~  168 (281)
T 1mp8_A          152 ---------------------------------------------------------------NDCVKLGDFGLSRYMED  168 (281)
T ss_dssp             ---------------------------------------------------------------TTEEEECC---------
T ss_pred             ---------------------------------------------------------------CCCEEECccccccccCc
Confidence                                                                           56799999999976543


Q ss_pred             cc----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhh
Q 013220          269 QF----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  343 (447)
Q Consensus       269 ~~----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  343 (447)
                      ..    ....+++.|+|||.+.+..++.++|||||||++|+|++ |..||...+      .......+..          
T Consensus       169 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~------~~~~~~~i~~----------  232 (281)
T 1mp8_A          169 STYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVK------NNDVIGRIEN----------  232 (281)
T ss_dssp             ----------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCC------GGGHHHHHHT----------
T ss_pred             ccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCC------HHHHHHHHHc----------
Confidence            21    22346788999999999899999999999999999996 999997652      1222111110          


Q ss_pred             hCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          344 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                     ......+...+..+.+||.+||+.||++|||+.|++++
T Consensus       233 -------------------------------~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~  270 (281)
T 1mp8_A          233 -------------------------------GERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQ  270 (281)
T ss_dssp             -------------------------------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -------------------------------CCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                                           00112344567789999999999999999999999864

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=8.1e-40  Score=330.03  Aligned_cols=249  Identities=20%  Similarity=0.340  Sum_probs=200.8

Q ss_pred             cccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           32 LFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        32 ~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      .++.++|++.++||+|+||.||+|++..++..||+|+++..  ......+.+|+++++.+      .|+||+++++++..
T Consensus       110 ~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~hpniv~~~~~~~~  183 (377)
T 3cbl_A          110 VLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQY------SHPNIVRLIGVCTQ  183 (377)
T ss_dssp             BCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTC------CCTTBCCEEEEECS
T ss_pred             EEchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhC------CCCCEEEEEEEEec
Confidence            34557899999999999999999999989999999988754  23345788999999998      79999999999875


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                      .    ...++||||+ +++|.+++.... ..+++..+..++.|++.||+|||++ ||+||||||+||++           
T Consensus       184 ~----~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~-~ivHrDlkp~Nil~-----------  246 (377)
T 3cbl_A          184 K----QPIYIVMELVQGGDFLTFLRTEG-ARLRVKTLLQMVGDAAAGMEYLESK-CCIHRDLAARNCLV-----------  246 (377)
T ss_dssp             S----SSCEEEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEE-----------
T ss_pred             C----CCcEEEEEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CcCCcccCHHHEEE-----------
Confidence            3    5799999999 889999886533 3489999999999999999999997 99999999999999           


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                   +.+..+||+|||++.....
T Consensus       247 -------------------------------------------------------------~~~~~~kl~DfG~s~~~~~  265 (377)
T 3cbl_A          247 -------------------------------------------------------------TEKNVLKISDFGMSREEAD  265 (377)
T ss_dssp             -------------------------------------------------------------CTTCCEEECCGGGCEECTT
T ss_pred             -------------------------------------------------------------cCCCcEEECcCCCceecCC
Confidence                                                                         3456799999999975443


Q ss_pred             cccc-----CCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh
Q 013220          269 QFAE-----EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  342 (447)
Q Consensus       269 ~~~~-----~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (447)
                      ....     ..++..|+|||.+.+..++.++|||||||++|+|++ |..||...+      .. .+.......       
T Consensus       266 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~------~~-~~~~~~~~~-------  331 (377)
T 3cbl_A          266 GVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLS------NQ-QTREFVEKG-------  331 (377)
T ss_dssp             SEEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSC------HH-HHHHHHHTT-------
T ss_pred             CceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC------HH-HHHHHHHcC-------
Confidence            2211     124667999999998889999999999999999998 999997642      11 111111100       


Q ss_pred             hhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                       .....+...++++.+||.+||+.||++|||++++++
T Consensus       332 ---------------------------------~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~  367 (377)
T 3cbl_A          332 ---------------------------------GRLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQ  367 (377)
T ss_dssp             ---------------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ---------------------------------CCCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHH
Confidence                                             011234455778999999999999999999999975

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=1.9e-39  Score=334.96  Aligned_cols=248  Identities=22%  Similarity=0.297  Sum_probs=201.1

Q ss_pred             cccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           32 LFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        32 ~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      .++.++|++.++||+|+||.||+|.+.  +..||||+++... ..+.+.+|+++++.+      .|+||+++++++... 
T Consensus       189 ~i~~~~~~~~~~lG~G~fg~V~~~~~~--~~~vavK~~~~~~-~~~~~~~E~~~l~~l------~h~niv~~~~~~~~~-  258 (450)
T 1k9a_A          189 ALNMKELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKNDA-TAQAFLAEASVMTQL------RHSNLVQLLGVIVEE-  258 (450)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEET--TEEEEEEEESSCT-TSHHHHHHHHHHHTC------CCTTBCCEEEEEECT-
T ss_pred             ccChHHeEEEeeecCcCCeeEEEEEec--CCeEEEEEeCCch-HHHHHHHHHHHHHhc------cCCCEEEEEEEEEcC-
Confidence            345578999999999999999999874  7799999988664 467789999999999      789999999987653 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                        ...+++||||| +++|.+++.......+++..+..++.|++.||+|||++ ||+||||||+||++             
T Consensus       259 --~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~-~ivHrDlkp~Nill-------------  322 (450)
T 1k9a_A          259 --KGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN-NFVHRDLAARNVLV-------------  322 (450)
T ss_dssp             --TSCEEEEEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEE-------------
T ss_pred             --CCceEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CeeCCCCCHhhEEE-------------
Confidence              24799999999 88999998765544578999999999999999999997 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF  270 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~  270 (447)
                                                                                 +.+..+||+|||++.......
T Consensus       323 -----------------------------------------------------------~~~~~~kl~DfG~a~~~~~~~  343 (450)
T 1k9a_A          323 -----------------------------------------------------------SEDNVAKVSDFGLTKEASSTQ  343 (450)
T ss_dssp             -----------------------------------------------------------CTTSCEEECCCTTCEECC---
T ss_pred             -----------------------------------------------------------CCCCCEEEeeCCCcccccccc
Confidence                                                                       345679999999997654443


Q ss_pred             ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      ....++..|+|||.+.+..++.++|||||||++|+|++ |..||...+..      .....+.+  |             
T Consensus       344 ~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~------~~~~~i~~--~-------------  402 (450)
T 1k9a_A          344 DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK------DVVPRVEK--G-------------  402 (450)
T ss_dssp             ---CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTT------THHHHHHT--T-------------
T ss_pred             cCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH------HHHHHHHc--C-------------
Confidence            44467889999999999999999999999999999998 99999765311      11111110  0             


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                .+...+..++..+.+||.+||+.||++|||+.++++
T Consensus       403 --------------------------~~~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~  438 (450)
T 1k9a_A          403 --------------------------YKMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLRE  438 (450)
T ss_dssp             --------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             --------------------------CCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence                                      011244556778999999999999999999999975

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=5.1e-40  Score=316.52  Aligned_cols=247  Identities=22%  Similarity=0.287  Sum_probs=191.6

Q ss_pred             ccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           33 FNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        33 ~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      +..++|++.+.||+|+||+||+|.+.  +..||+|+++... ..+.+.+|+++++.+      .|+||+++++++...  
T Consensus        18 ~~~~~y~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~~-~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~~--   86 (278)
T 1byg_A           18 LNMKELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKNDA-TAQAFLAEASVMTQL------RHSNLVQLLGVIVEE--   86 (278)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEET--TEEEEEEECCCCC---HHHHHTHHHHTTC------CCTTBCCEEEEECCC--
T ss_pred             CChhhceEEeEEecCCCceEEEEEEc--CCEEEEEEecchh-HHHHHHHHHHHHHhC------CCCCEeeEEEEEEcC--
Confidence            34579999999999999999999874  8899999987654 356788999999998      789999999987542  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                       ....++||||+ +++|.+++.......+++..+..++.|++.||+|||++ ||+||||||+||++              
T Consensus        87 -~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dlkp~Nil~--------------  150 (278)
T 1byg_A           87 -KGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN-NFVHRDLAARNVLV--------------  150 (278)
T ss_dssp             ---CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEE--------------
T ss_pred             -CCceEEEEecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhC-CccccCCCcceEEE--------------
Confidence             34789999999 77999988765433478899999999999999999997 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccc
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA  271 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~  271 (447)
                                                                                +.+..++|+|||.+........
T Consensus       151 ----------------------------------------------------------~~~~~~~l~Dfg~~~~~~~~~~  172 (278)
T 1byg_A          151 ----------------------------------------------------------SEDNVAKVSDFGLTKEASSTQD  172 (278)
T ss_dssp             ----------------------------------------------------------CTTSCEEECCCCC---------
T ss_pred             ----------------------------------------------------------eCCCcEEEeecccccccccccc
Confidence                                                                      3456799999999976655545


Q ss_pred             cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          272 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       272 ~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      ...+++.|+|||.+.+..++.++|||||||++|+|++ |..||...+      .......+..   .             
T Consensus       173 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~------~~~~~~~~~~---~-------------  230 (278)
T 1byg_A          173 TGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP------LKDVVPRVEK---G-------------  230 (278)
T ss_dssp             ---CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSC------GGGHHHHHTT---T-------------
T ss_pred             CCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHhc---C-------------
Confidence            5567899999999999899999999999999999998 999997542      1111111100   0             


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                               .....+...+..+.++|.+||+.||++|||+.|+++
T Consensus       231 -------------------------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~  266 (278)
T 1byg_A          231 -------------------------YKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLRE  266 (278)
T ss_dssp             -------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -------------------------CCCCCcccCCHHHHHHHHHHhcCChhhCCCHHHHHH
Confidence                                     011233455778999999999999999999999985

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.4e-39  Score=325.90  Aligned_cols=249  Identities=23%  Similarity=0.353  Sum_probs=200.5

Q ss_pred             CCceEEEEeecccCceEEEEEEeCC-------CCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTR-------TSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLID  105 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~-------~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~  105 (447)
                      .++|.+.++||+|+||+||+|++..       .+..||+|+++..  ......+.+|+++++.+.     .|+||+++++
T Consensus        68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~hpnIv~~~~  142 (382)
T 3tt0_A           68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIG-----KHKNIINLLG  142 (382)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHC-----CCTTBCCEEE
T ss_pred             hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhc-----CCchhhhhee
Confidence            4799999999999999999998643       3468999998754  234567889999999995     7899999999


Q ss_pred             cccccCCCcceEEEEEecc-cccHHHHHHhhcc--------------CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccC
Q 013220          106 HFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRY--------------KGLELNKVREICKYILTGLDYLHRELGIIHTDL  170 (447)
Q Consensus       106 ~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~--------------~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Di  170 (447)
                      ++...    ...++||||+ +++|.+++.....              ..+++..+..++.||+.||+|||++ ||+||||
T Consensus       143 ~~~~~----~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dl  217 (382)
T 3tt0_A          143 ACTQD----GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK-KCIHRDL  217 (382)
T ss_dssp             EECSS----SSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCC
T ss_pred             eeccC----CceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC-CEecCCC
Confidence            98753    6789999999 8899999876431              3489999999999999999999997 9999999


Q ss_pred             CCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCC
Q 013220          171 KPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDG  250 (447)
Q Consensus       171 kp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (447)
                      ||+||++                                                                        +
T Consensus       218 kp~NIll------------------------------------------------------------------------~  225 (382)
T 3tt0_A          218 AARNVLV------------------------------------------------------------------------T  225 (382)
T ss_dssp             CGGGEEE------------------------------------------------------------------------C
T ss_pred             CcceEEE------------------------------------------------------------------------c
Confidence            9999999                                                                        3


Q ss_pred             cccceeEeecCcccccccc-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCc
Q 013220          251 IDMRCKVVDFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCED  324 (447)
Q Consensus       251 ~~~~~kL~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~  324 (447)
                      ....+||+|||++......     .....+|+.|+|||++.+..++.++|||||||++|+|++ |..||...+      .
T Consensus       226 ~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~------~  299 (382)
T 3tt0_A          226 EDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP------V  299 (382)
T ss_dssp             TTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC------H
T ss_pred             CCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCC------H
Confidence            4567999999999755432     223356788999999999999999999999999999999 999997552      1


Q ss_pred             hHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC
Q 013220          325 EDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP  404 (447)
Q Consensus       325 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp  404 (447)
                      ......+.+   .                                      .....+...+.++.+||.+||+.||++||
T Consensus       300 ~~~~~~~~~---~--------------------------------------~~~~~~~~~~~~l~~li~~~l~~dP~~Rp  338 (382)
T 3tt0_A          300 EELFKLLKE---G--------------------------------------HRMDKPSNCTNELYMMMRDCWHAVPSQRP  338 (382)
T ss_dssp             HHHHHHHHT---T--------------------------------------CCCCCCSSCCHHHHHHHHHHTCSSGGGSC
T ss_pred             HHHHHHHHc---C--------------------------------------CCCCCCccCCHHHHHHHHHHcCCChhhCc
Confidence            111111110   0                                      01112344567899999999999999999


Q ss_pred             ChHHHhcC
Q 013220          405 TAQQCLQH  412 (447)
Q Consensus       405 ta~elL~h  412 (447)
                      |++|++++
T Consensus       339 s~~ell~~  346 (382)
T 3tt0_A          339 TFKQLVED  346 (382)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            99999976

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=4.3e-40  Score=324.82  Aligned_cols=269  Identities=23%  Similarity=0.295  Sum_probs=207.3

Q ss_pred             ccCccccCCceEEEEeecccCceEEEEEE----eCCCCeEEEEEEechh-HHhHHHHHHHHHHHHHhhcCCCCCcceeee
Q 013220           28 RVGDLFNGGRYIAQRKLGWGQFSIVWLAY----DTRTSSYVALKIQKSA-AQFAQAALHEIEVLSAVADGDPSNEKCVIR  102 (447)
Q Consensus        28 ~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~----~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~  102 (447)
                      .+++++..++|++.++||+|+||+||+|+    +..+++.||+|++... ....+.+.+|+++++.+      .|+||++
T Consensus        15 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~   88 (327)
T 3lxl_A           15 QDPTIFEERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKAL------HSDFIVK   88 (327)
T ss_dssp             --CCBCCGGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTC------CCTTBCC
T ss_pred             ChhhhhchhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhc------CCCceeE
Confidence            56788888999999999999999999998    5678999999987654 34456789999999999      7899999


Q ss_pred             ecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecC
Q 013220          103 LIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTI  181 (447)
Q Consensus       103 ~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~  181 (447)
                      +++++...  +....++||||+ +++|.+++.... ..+++..+..++.|++.||+|||++ ||+||||||+||++..  
T Consensus        89 ~~~~~~~~--~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~-~ivH~Dikp~NIl~~~--  162 (327)
T 3lxl_A           89 YRGVSYGP--GRQSLRLVMEYLPSGCLRDFLQRHR-ARLDASRLLLYSSQICKGMEYLGSR-RCVHRDLAARNILVES--  162 (327)
T ss_dssp             EEEEEECS--SSCEEEEEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEEE--
T ss_pred             EEEEEecC--CCceEEEEEeecCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhC-CccCCCCChhhEEECC--
Confidence            99987643  456899999999 889999886543 3489999999999999999999996 9999999999999943  


Q ss_pred             CCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecC
Q 013220          182 DPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFG  261 (447)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg  261 (447)
                                                                                            ...++|+|||
T Consensus       163 ----------------------------------------------------------------------~~~~kl~Dfg  172 (327)
T 3lxl_A          163 ----------------------------------------------------------------------EAHVKIADFG  172 (327)
T ss_dssp             ----------------------------------------------------------------------TTEEEECCGG
T ss_pred             ----------------------------------------------------------------------CCCEEEcccc
Confidence                                                                                  5679999999


Q ss_pred             cccccccc------cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHh
Q 013220          262 NACRANKQ------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI  335 (447)
Q Consensus       262 ~a~~~~~~------~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~  335 (447)
                      .+......      .....+|..|+|||.+.+..++.++|||||||++|+|++|..||....        ..   .....
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~--------~~---~~~~~  241 (327)
T 3lxl_A          173 LAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPS--------AE---FLRMM  241 (327)
T ss_dssp             GCEECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHH--------HH---HHHHC
T ss_pred             cceecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCcccc--------ch---hhhhc
Confidence            99755422      223357888999999999889999999999999999999999986432        00   00000


Q ss_pred             CCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhh--hhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          336 GKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLV--DKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       336 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                      ....               .......        ....+.  .....+...++.+.+||.+||+.||++|||++|++++
T Consensus       242 ~~~~---------------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~  297 (327)
T 3lxl_A          242 GCER---------------DVPALSR--------LLELLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQ  297 (327)
T ss_dssp             C-------------------CCHHHH--------HHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             cccc---------------ccccHHH--------HHHHhhcccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            0000               0000000        000001  1123455667899999999999999999999999654

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=2.6e-39  Score=308.97  Aligned_cols=248  Identities=22%  Similarity=0.358  Sum_probs=201.5

Q ss_pred             ccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           33 FNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        33 ~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      +..++|++.+.||+|+||.||+|++. ++..||+|++.......+.+.+|+++++.+      .|+||+++++++...  
T Consensus         5 i~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~~~--   75 (267)
T 3t9t_A            5 IDPSELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAMSEEDFIEEAEVMMKL------SHPKLVQLYGVCLEQ--   75 (267)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTTBCHHHHHHHHHHHHTC------CCTTBCCEEEEECSS--
T ss_pred             EchhheeeeeEecCCCceeEEEEEec-CCCeEEEEEccccCCCHHHHHHHHHHHHhC------CCCCEeeEEEEEccC--
Confidence            34578999999999999999999986 577899999887765567899999999999      789999999998753  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                        ...++||||+ +++|.+++.... ..+++..+..++.|++.||+|||++ ||+||||||+||++              
T Consensus        76 --~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dl~p~Nili--------------  137 (267)
T 3t9t_A           76 --APICLVTEFMEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAYLEEA-CVIHRDLAARNCLV--------------  137 (267)
T ss_dssp             --SSCEEEECCCTTCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSSCCGGGEEE--------------
T ss_pred             --CCeEEEEeCCCCCcHHHHHhhCc-ccCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCchheEEE--------------
Confidence              5799999999 789998886543 4589999999999999999999997 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                +.+..++|+|||.+......  
T Consensus       138 ----------------------------------------------------------~~~~~~kl~dfg~~~~~~~~~~  159 (267)
T 3t9t_A          138 ----------------------------------------------------------GENQVIKVSDFGMTRFVLDDQY  159 (267)
T ss_dssp             ----------------------------------------------------------CGGGCEEECCTTGGGGBCCHHH
T ss_pred             ----------------------------------------------------------CCCCCEEEcccccccccccccc
Confidence                                                                      34567999999999755322  


Q ss_pred             --cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCC
Q 013220          270 --FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  346 (447)
Q Consensus       270 --~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  346 (447)
                        .....++..|+|||.+.+..++.++|||||||++|+|++ |..||...+      .......+..   ..        
T Consensus       160 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~------~~~~~~~i~~---~~--------  222 (267)
T 3t9t_A          160 TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRS------NSEVVEDIST---GF--------  222 (267)
T ss_dssp             HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC------HHHHHHHHHT---TC--------
T ss_pred             cccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCC------HHHHHHHHhc---CC--------
Confidence              223456788999999998899999999999999999999 899997542      1111111110   00        


Q ss_pred             CCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          347 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                    ....+...+..+.+||.+||+.||++|||+++++++
T Consensus       223 ------------------------------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~  258 (267)
T 3t9t_A          223 ------------------------------RLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQ  258 (267)
T ss_dssp             ------------------------------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ------------------------------cCCCCccCcHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                                          011233446688999999999999999999999874

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=1.6e-39  Score=316.23  Aligned_cols=268  Identities=23%  Similarity=0.343  Sum_probs=204.2

Q ss_pred             cccCccccCCceEEEEeecccCceEEEEEE----eCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCccee
Q 013220           27 VRVGDLFNGGRYIAQRKLGWGQFSIVWLAY----DTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCV  100 (447)
Q Consensus        27 ~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~----~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~I  100 (447)
                      +..+.+.. .+|++.++||+|+||.||+|+    +..+++.||+|+++...  ...+.+.+|+++++.+      .|+||
T Consensus        13 ~~~~~~~~-~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i   85 (302)
T 4e5w_A           13 VDPTHFEK-RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNL------YHENI   85 (302)
T ss_dssp             CCTTBCCG-GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTC------CCTTB
T ss_pred             cChhhhhh-hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhC------CCCCe
Confidence            34445444 789999999999999999998    66789999999887543  2346788999999999      78999


Q ss_pred             eeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeee
Q 013220          101 IRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVS  179 (447)
Q Consensus       101 v~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~  179 (447)
                      +++++++...  ....+++||||+ +++|.+++.... ..+++..+..++.|++.||+|||++ ||+||||||+||++..
T Consensus        86 ~~~~~~~~~~--~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dikp~Nil~~~  161 (302)
T 4e5w_A           86 VKYKGICTED--GGNGIKLIMEFLPSGSLKEYLPKNK-NKINLKQQLKYAVQICKGMDYLGSR-QYVHRDLAARNVLVES  161 (302)
T ss_dssp             CCEEEEEEC-----CCEEEEEECCTTCBHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEEE
T ss_pred             eeeeeEEecC--CCceEEEEEEeCCCCcHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHhhcC-CcccCCCchheEEEcC
Confidence            9999998864  345799999999 789999885543 4589999999999999999999997 9999999999999943


Q ss_pred             cCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEee
Q 013220          180 TIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVD  259 (447)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~D  259 (447)
                                                                                              ...++|+|
T Consensus       162 ------------------------------------------------------------------------~~~~kl~D  169 (302)
T 4e5w_A          162 ------------------------------------------------------------------------EHQVKIGD  169 (302)
T ss_dssp             ------------------------------------------------------------------------TTEEEECC
T ss_pred             ------------------------------------------------------------------------CCCEEECc
Confidence                                                                                    56799999


Q ss_pred             cCcccccccc------cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHH
Q 013220          260 FGNACRANKQ------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMME  333 (447)
Q Consensus       260 fg~a~~~~~~------~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~  333 (447)
                      ||.+......      .....+|..|+|||.+.+..++.++|||||||++|+|++|..|+...           ......
T Consensus       170 fg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~-----------~~~~~~  238 (302)
T 4e5w_A          170 FGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSP-----------MALFLK  238 (302)
T ss_dssp             CTTCEECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSH-----------HHHHHH
T ss_pred             ccccccccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcch-----------hhHHhh
Confidence            9999765432      22346788899999999988999999999999999999999987432           111222


Q ss_pred             HhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhh--hhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          334 LIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLV--DKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       334 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                      ..+......               ...        .....+.  .....+...++.+.+||.+||+.||.+|||++++++
T Consensus       239 ~~~~~~~~~---------------~~~--------~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  295 (302)
T 4e5w_A          239 MIGPTHGQM---------------TVT--------RLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIE  295 (302)
T ss_dssp             HHCSCCGGG---------------HHH--------HHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHH
T ss_pred             ccCCccccc---------------CHH--------HHHHHHhccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHH
Confidence            222211110               000        0000111  122345566789999999999999999999999985

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=4.2e-39  Score=314.67  Aligned_cols=251  Identities=25%  Similarity=0.348  Sum_probs=201.0

Q ss_pred             cCCceEEEEeecccCceEEEEEEe-----CCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccc
Q 013220           34 NGGRYIAQRKLGWGQFSIVWLAYD-----TRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDH  106 (447)
Q Consensus        34 ~~~~y~l~~~lG~G~~g~Vy~a~~-----~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~  106 (447)
                      ..++|++.+.||+|+||+||+|++     ..++..||+|+++...  ...+.+.+|+++++.+.     +|+||++++++
T Consensus        21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~~i~~~~~~   95 (313)
T 1t46_A           21 PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLG-----NHMNIVNLLGA   95 (313)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHC-----CCTTBCCEEEE
T ss_pred             ChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcc-----cCCCeeeEEEE
Confidence            357999999999999999999984     4578899999987543  33567889999999995     78999999999


Q ss_pred             ccccCCCcceEEEEEecc-cccHHHHHHhhcc----------------CCCCHHHHHHHHHHHHHHHHHHHhhCCccccc
Q 013220          107 FKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRY----------------KGLELNKVREICKYILTGLDYLHRELGIIHTD  169 (447)
Q Consensus       107 ~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~----------------~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~D  169 (447)
                      +...    ...++||||+ +++|.+++.....                ..+++..+..++.|++.||+|||++ ||+|||
T Consensus        96 ~~~~----~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~d  170 (313)
T 1t46_A           96 CTIG----GPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK-NCIHRD  170 (313)
T ss_dssp             ECSS----SSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSC
T ss_pred             EecC----CCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC-CeecCC
Confidence            8753    5789999999 7899998875432                1488999999999999999999997 999999


Q ss_pred             CCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCC
Q 013220          170 LKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLD  249 (447)
Q Consensus       170 ikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (447)
                      |||+||+++                                                                       
T Consensus       171 lkp~Nil~~-----------------------------------------------------------------------  179 (313)
T 1t46_A          171 LAARNILLT-----------------------------------------------------------------------  179 (313)
T ss_dssp             CSGGGEEEE-----------------------------------------------------------------------
T ss_pred             CccceEEEc-----------------------------------------------------------------------
Confidence            999999993                                                                       


Q ss_pred             CcccceeEeecCccccccccc-----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCC
Q 013220          250 GIDMRCKVVDFGNACRANKQF-----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCE  323 (447)
Q Consensus       250 ~~~~~~kL~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~  323 (447)
                       ....++|+|||.+.......     ....+|+.|+|||.+.+..++.++|||||||++|+|++ |..||....      
T Consensus       180 -~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~------  252 (313)
T 1t46_A          180 -HGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMP------  252 (313)
T ss_dssp             -TTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC------
T ss_pred             -CCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCccc------
Confidence             35679999999997654332     12345778999999999999999999999999999998 999997653      


Q ss_pred             chHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCC
Q 013220          324 DEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKR  403 (447)
Q Consensus       324 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kR  403 (447)
                      ............                                        .....+...+..+.+||.+||+.||.+|
T Consensus       253 ~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~l~~li~~~l~~dp~~R  292 (313)
T 1t46_A          253 VDSKFYKMIKEG----------------------------------------FRMLSPEHAPAEMYDIMKTCWDADPLKR  292 (313)
T ss_dssp             SSHHHHHHHHHT----------------------------------------CCCCCCTTSCHHHHHHHHHHTCSSGGGS
T ss_pred             chhHHHHHhccC----------------------------------------CCCCCcccCCHHHHHHHHHHcCCCchhC
Confidence            111111111100                                        0011233456789999999999999999


Q ss_pred             CChHHHhcC
Q 013220          404 PTAQQCLQH  412 (447)
Q Consensus       404 pta~elL~h  412 (447)
                      ||++|++++
T Consensus       293 ps~~ell~~  301 (313)
T 1t46_A          293 PTFKQIVQL  301 (313)
T ss_dssp             CCHHHHHHH
T ss_pred             cCHHHHHHH
Confidence            999999875

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.4e-39  Score=320.87  Aligned_cols=252  Identities=21%  Similarity=0.294  Sum_probs=184.9

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh-HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc---
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA-AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA---  110 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~---  110 (447)
                      +.+|++.+.||+|+||+||+|++..+++.||+|++... ....+.+.+|+.+++.+.     +|+||+++++++...   
T Consensus        27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-----~h~~iv~~~~~~~~~~~~  101 (337)
T 3ll6_A           27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLS-----GHPNIVQFCSAASIGKEE  101 (337)
T ss_dssp             TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHT-----TSTTBCCEEEEEEECTTT
T ss_pred             CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhc-----cCCChhhccccccccccc
Confidence            46899999999999999999999999999999976443 344567889999999994     599999999988432   


Q ss_pred             -CCCcceEEEEEecccccHHHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHHhhCC--cccccCCCCCeEeeecCCCCCC
Q 013220          111 -GPNGQHLCMVLEFLGDSLLRLIKYS-RYKGLELNKVREICKYILTGLDYLHRELG--IIHTDLKPENILLVSTIDPSKD  186 (447)
Q Consensus       111 -~~~~~~~~lvmE~~~~~L~~~~~~~-~~~~l~~~~~~~i~~qil~aL~~lH~~~g--IiH~Dikp~Nill~~~~~~~~~  186 (447)
                       ......+++||||++++|.+++... ....+++..+..++.||+.||+|||++ |  |+||||||+||++         
T Consensus       102 ~~~~~~~~~lv~e~~~g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~-~~~ivH~Dikp~NIl~---------  171 (337)
T 3ll6_A          102 SDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQ-KPPIIHRDLKVENLLL---------  171 (337)
T ss_dssp             STTSSEEEEEEEECCSEEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTS-SSCCBCCCCCGGGCEE---------
T ss_pred             cccCCceEEEEEEecCCCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC-CCCEEEccCCcccEEE---------
Confidence             1244679999999988998887642 234589999999999999999999996 9  9999999999999         


Q ss_pred             cccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccc
Q 013220          187 PIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA  266 (447)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~  266 (447)
                                                                                     +....++|+|||++...
T Consensus       172 ---------------------------------------------------------------~~~~~~kl~Dfg~~~~~  188 (337)
T 3ll6_A          172 ---------------------------------------------------------------SNQGTIKLCDFGSATTI  188 (337)
T ss_dssp             ---------------------------------------------------------------CTTSCEEBCCCTTCBCC
T ss_pred             ---------------------------------------------------------------CCCCCEEEecCccceec
Confidence                                                                           34567999999999765


Q ss_pred             ccccc---------------cCCCCCCccChHHh---hcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHH
Q 013220          267 NKQFA---------------EEIQTRQYRAPEVI---LRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHL  328 (447)
Q Consensus       267 ~~~~~---------------~~~gt~~y~aPE~l---~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~  328 (447)
                      .....               ...||+.|+|||++   .+..++.++|||||||++|+|++|..||.......        
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~--------  260 (337)
T 3ll6_A          189 SHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLR--------  260 (337)
T ss_dssp             SSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC---------------
T ss_pred             cccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHHH--------
Confidence            43211               33589999999998   45678899999999999999999999996542110        


Q ss_pred             HHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHH
Q 013220          329 ALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQ  408 (447)
Q Consensus       329 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~e  408 (447)
                       .......                                         .......+..+.+||.+||+.||++|||++|
T Consensus       261 -~~~~~~~-----------------------------------------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e  298 (337)
T 3ll6_A          261 -IVNGKYS-----------------------------------------IPPHDTQYTVFHSLIRAMLQVNPEERLSIAE  298 (337)
T ss_dssp             ------CC-----------------------------------------CCTTCCSSGGGHHHHHHHSCSSGGGSCCHHH
T ss_pred             -hhcCccc-----------------------------------------CCcccccchHHHHHHHHHccCChhhCcCHHH
Confidence             0000000                                         0011122346789999999999999999999


Q ss_pred             HhcCcc
Q 013220          409 CLQHPW  414 (447)
Q Consensus       409 lL~hp~  414 (447)
                      +++|.+
T Consensus       299 ~l~~l~  304 (337)
T 3ll6_A          299 VVHQLQ  304 (337)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999864

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.6e-39  Score=321.46  Aligned_cols=253  Identities=19%  Similarity=0.302  Sum_probs=195.7

Q ss_pred             ccCccccCCceEEEEeecccCceEEEEEEeCCCCeEE----EEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceee
Q 013220           28 RVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYV----ALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVI  101 (447)
Q Consensus        28 ~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~v----aiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv  101 (447)
                      .+.+++..++|++.++||+|+||+||+|++..+++.+    |+|.+...  ......+.+|+++++.+      .|+||+
T Consensus         7 ~~~~~l~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv   80 (327)
T 3lzb_A            7 ALLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV------DNPHVC   80 (327)
T ss_dssp             -CCEECCTTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTC------CBTTBC
T ss_pred             hhhcccCHhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhC------CCCCee
Confidence            4566777799999999999999999999998887765    55554322  23456788999999999      789999


Q ss_pred             eecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeec
Q 013220          102 RLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVST  180 (447)
Q Consensus       102 ~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~  180 (447)
                      ++++++...     ..++||+|+ +++|.+.+.... ..+++..+..++.||+.||+|||++ ||+||||||+||++.. 
T Consensus        81 ~~~~~~~~~-----~~~~v~~~~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dikp~NIl~~~-  152 (327)
T 3lzb_A           81 RLLGICLTS-----TVQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEDR-RLVHRDLAARNVLVKT-  152 (327)
T ss_dssp             CCCEEEESS-----SEEEEECCCSSCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEEE-
T ss_pred             EEEEEEecC-----CceEEEEecCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhhC-CCcCCCCCHHHEEEcC-
Confidence            999998753     478899999 889998886543 4589999999999999999999996 9999999999999943 


Q ss_pred             CCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeec
Q 013220          181 IDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDF  260 (447)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Df  260 (447)
                                                                                             ...++|+||
T Consensus       153 -----------------------------------------------------------------------~~~~kL~Df  161 (327)
T 3lzb_A          153 -----------------------------------------------------------------------PQHVKITDF  161 (327)
T ss_dssp             -----------------------------------------------------------------------TTEEEECCT
T ss_pred             -----------------------------------------------------------------------CCCEEEccC
Confidence                                                                                   567999999


Q ss_pred             Cccccccccc-----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHH
Q 013220          261 GNACRANKQF-----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMEL  334 (447)
Q Consensus       261 g~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~  334 (447)
                      |++.......     ....+|+.|+|||.+.+..++.++|||||||++|+|++ |..||...+      .... ......
T Consensus       162 G~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~------~~~~-~~~~~~  234 (327)
T 3lzb_A          162 GLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP------ASEI-SSILEK  234 (327)
T ss_dssp             TC----------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC------GGGH-HHHHHT
T ss_pred             cceeEccCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCC------HHHH-HHHHHc
Confidence            9997653221     22346778999999999999999999999999999999 999997653      1111 111110


Q ss_pred             hCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          335 IGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       335 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                      .                                        .....+...+..+.+||.+||+.||.+|||++|+++.
T Consensus       235 ~----------------------------------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  272 (327)
T 3lzb_A          235 G----------------------------------------ERLPQPPICTIDVYMIMRKCWMIDADSRPKFRELIIE  272 (327)
T ss_dssp             T----------------------------------------CCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             C----------------------------------------CCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence            0                                        0112334456789999999999999999999999863

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=1.6e-39  Score=317.73  Aligned_cols=248  Identities=23%  Similarity=0.348  Sum_probs=199.4

Q ss_pred             CCceEEEEeecccCceEEEEEEeC-----CCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDT-----RTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~-----~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      .++|++.+.||+|+||.||+|++.     .++..||+|+++..  ....+.+.+|+++++.+      .|+||+++++++
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~~~~   95 (314)
T 2ivs_A           22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQV------NHPHVIKLYGAC   95 (314)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTC------CCTTBCCEEEEE
T ss_pred             hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhC------CCCceeeEEEEE
Confidence            489999999999999999999873     45689999998754  23456788999999998      799999999998


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhcc----------------------CCCCHHHHHHHHHHHHHHHHHHHhhCC
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSRY----------------------KGLELNKVREICKYILTGLDYLHRELG  164 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~----------------------~~l~~~~~~~i~~qil~aL~~lH~~~g  164 (447)
                      ...    ...++||||+ +++|.+++.....                      ..+++..+..++.||+.||+|||++ |
T Consensus        96 ~~~----~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~  170 (314)
T 2ivs_A           96 SQD----GPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM-K  170 (314)
T ss_dssp             CSS----SSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             ecC----CceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC-C
Confidence            753    6799999999 7899998875432                      2378899999999999999999997 9


Q ss_pred             cccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCC
Q 013220          165 IIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKP  244 (447)
Q Consensus       165 IiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (447)
                      |+||||||+||++.                                                                  
T Consensus       171 ivH~dikp~NIli~------------------------------------------------------------------  184 (314)
T 2ivs_A          171 LVHRDLAARNILVA------------------------------------------------------------------  184 (314)
T ss_dssp             EECCCCSGGGEEEE------------------------------------------------------------------
T ss_pred             CcccccchheEEEc------------------------------------------------------------------
Confidence            99999999999993                                                                  


Q ss_pred             CccCCCcccceeEeecCcccccccc-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCC
Q 013220          245 ERCLDGIDMRCKVVDFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSG  318 (447)
Q Consensus       245 ~~~~~~~~~~~kL~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~  318 (447)
                            ....++|+|||++......     .....+|+.|+|||.+.+..++.++|||||||++|+|++ |..||...+ 
T Consensus       185 ------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~-  257 (314)
T 2ivs_A          185 ------EGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIP-  257 (314)
T ss_dssp             ------TTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC-
T ss_pred             ------CCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCC-
Confidence                  3567999999999754322     123356788999999999889999999999999999999 999997653 


Q ss_pred             CCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhcccc
Q 013220          319 QGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDF  398 (447)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~  398 (447)
                           .......+..  +                                       .....+...++.+.+||.+||+.
T Consensus       258 -----~~~~~~~~~~--~---------------------------------------~~~~~~~~~~~~~~~li~~~l~~  291 (314)
T 2ivs_A          258 -----PERLFNLLKT--G---------------------------------------HRMERPDNCSEEMYRLMLQCWKQ  291 (314)
T ss_dssp             -----GGGHHHHHHT--T---------------------------------------CCCCCCTTCCHHHHHHHHHHTCS
T ss_pred             -----HHHHHHHhhc--C---------------------------------------CcCCCCccCCHHHHHHHHHHccC
Confidence                 1111111110  0                                       01123345577899999999999


Q ss_pred             CCCCCCChHHHhcC
Q 013220          399 TPEKRPTAQQCLQH  412 (447)
Q Consensus       399 dP~kRpta~elL~h  412 (447)
                      ||++|||+++++++
T Consensus       292 dp~~Rps~~~l~~~  305 (314)
T 2ivs_A          292 EPDKRPVFADISKD  305 (314)
T ss_dssp             SGGGSCCHHHHHHH
T ss_pred             ChhhCcCHHHHHHH
Confidence            99999999999875

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=7.8e-40  Score=316.51  Aligned_cols=253  Identities=20%  Similarity=0.311  Sum_probs=196.1

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCC-------eEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTS-------SYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDH  106 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~-------~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~  106 (447)
                      .++|++.+.||+|+||+||+|++..++       ..||+|++.... ...+.+.+|+++++.+      .|+||++++++
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~   80 (289)
T 4fvq_A            7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKL------SHKHLVLNYGV   80 (289)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTS------CCTTBCCEEEE
T ss_pred             hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhC------CCCCEeEEEEE
Confidence            479999999999999999999887766       579999876543 4456788999999999      79999999999


Q ss_pred             ccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCC
Q 013220          107 FKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK  185 (447)
Q Consensus       107 ~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~  185 (447)
                      +...    ...++||||+ +++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+||++....... 
T Consensus        81 ~~~~----~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~L~~LH~~-~ivH~Dlkp~NIll~~~~~~~-  153 (289)
T 4fvq_A           81 CVCG----DENILVQEFVKFGSLDTYLKKNK-NCINILWKLEVAKQLAAAMHFLEEN-TLIHGNVCAKNILLIREEDRK-  153 (289)
T ss_dssp             ECCT----TCCEEEEECCTTCBHHHHHHHTG-GGCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEEEECCBGG-
T ss_pred             EEeC----CCCEEEEECCCCCCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHhhC-CeECCCcCcceEEEecCCccc-
Confidence            8853    5789999999 789999886543 3489999999999999999999997 999999999999996521000 


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccc
Q 013220          186 DPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR  265 (447)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~  265 (447)
                                                                                     ......++|+|||.+..
T Consensus       154 ---------------------------------------------------------------~~~~~~~kl~Dfg~~~~  170 (289)
T 4fvq_A          154 ---------------------------------------------------------------TGNPPFIKLSDPGISIT  170 (289)
T ss_dssp             ---------------------------------------------------------------GTBCCEEEECCCCSCTT
T ss_pred             ---------------------------------------------------------------ccccceeeeccCccccc
Confidence                                                                           01123499999999865


Q ss_pred             cccccccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhh
Q 013220          266 ANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  344 (447)
Q Consensus       266 ~~~~~~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (447)
                      .... ....+++.|+|||.+.+ ..++.++|||||||++|+|++|..|+....      .........            
T Consensus       171 ~~~~-~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~------~~~~~~~~~------------  231 (289)
T 4fvq_A          171 VLPK-DILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSAL------DSQRKLQFY------------  231 (289)
T ss_dssp             TSCH-HHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTS------CHHHHHHHH------------
T ss_pred             ccCc-cccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCcccc------chHHHHHHh------------
Confidence            4332 23457889999999987 678999999999999999999655543321      111111111            


Q ss_pred             CCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          345 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                    ......+...+..+.+||.+||+.||++|||++|+++|
T Consensus       232 ------------------------------~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~  269 (289)
T 4fvq_A          232 ------------------------------EDRHQLPAPKAAELANLINNCMDYEPDHRPSFRAIIRD  269 (289)
T ss_dssp             ------------------------------HTTCCCCCCSSCTTHHHHHHHSCSSGGGSCCHHHHHHH
T ss_pred             ------------------------------hccCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence                                          11112233345578899999999999999999999976

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=2.2e-39  Score=321.03  Aligned_cols=248  Identities=19%  Similarity=0.334  Sum_probs=199.2

Q ss_pred             CCceEEEEeecccCceEEEEEEeC-----CCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDT-----RTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~-----~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      .++|++.+.||+|+||.||+|++.     .+++.||+|+++..  ....+.+.+|+++++.+      .|+||+++++++
T Consensus        46 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~~~~  119 (343)
T 1luf_A           46 RNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEF------DNPNIVKLLGVC  119 (343)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTC------CCTTBCCEEEEE
T ss_pred             HHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhC------CCCCEEEEEEEE
Confidence            378999999999999999999886     35589999998754  23456788999999999      789999999998


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhc----------------------cCCCCHHHHHHHHHHHHHHHHHHHhhCC
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSR----------------------YKGLELNKVREICKYILTGLDYLHRELG  164 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~----------------------~~~l~~~~~~~i~~qil~aL~~lH~~~g  164 (447)
                      ..    ....++||||+ +++|.+++....                      ...+++..+..++.||+.||+|||++ |
T Consensus       120 ~~----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~-~  194 (343)
T 1luf_A          120 AV----GKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER-K  194 (343)
T ss_dssp             CS----SSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             cc----CCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            75    36799999999 789999886532                      14588999999999999999999997 9


Q ss_pred             cccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCC
Q 013220          165 IIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKP  244 (447)
Q Consensus       165 IiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (447)
                      |+||||||+||++                                                                   
T Consensus       195 ivH~Dlkp~NIl~-------------------------------------------------------------------  207 (343)
T 1luf_A          195 FVHRDLATRNCLV-------------------------------------------------------------------  207 (343)
T ss_dssp             CCCSCCSGGGEEE-------------------------------------------------------------------
T ss_pred             eecCCCCcceEEE-------------------------------------------------------------------
Confidence            9999999999999                                                                   


Q ss_pred             CccCCCcccceeEeecCcccccccc-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCC
Q 013220          245 ERCLDGIDMRCKVVDFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSG  318 (447)
Q Consensus       245 ~~~~~~~~~~~kL~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~  318 (447)
                           +.+..++|+|||++......     .....+|+.|+|||.+.+..++.++|||||||++|+|++ |..||...+ 
T Consensus       208 -----~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~-  281 (343)
T 1luf_A          208 -----GENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMA-  281 (343)
T ss_dssp             -----CGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC-
T ss_pred             -----CCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCC-
Confidence                 44668999999999654322     223467889999999999899999999999999999998 999997542 


Q ss_pred             CCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhcccc
Q 013220          319 QGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDF  398 (447)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~  398 (447)
                           .......+.+  +.                                       ....+...+..+.+||.+||+.
T Consensus       282 -----~~~~~~~~~~--~~---------------------------------------~~~~~~~~~~~l~~li~~~l~~  315 (343)
T 1luf_A          282 -----HEEVIYYVRD--GN---------------------------------------ILACPENCPLELYNLMRLCWSK  315 (343)
T ss_dssp             -----HHHHHHHHHT--TC---------------------------------------CCCCCTTCCHHHHHHHHHHTCS
T ss_pred             -----hHHHHHHHhC--CC---------------------------------------cCCCCCCCCHHHHHHHHHHccc
Confidence                 1111111110  00                                       0113345567899999999999


Q ss_pred             CCCCCCChHHHhcC
Q 013220          399 TPEKRPTAQQCLQH  412 (447)
Q Consensus       399 dP~kRpta~elL~h  412 (447)
                      ||++|||+.+++++
T Consensus       316 ~p~~Rps~~~~~~~  329 (343)
T 1luf_A          316 LPADRPSFCSIHRI  329 (343)
T ss_dssp             SGGGSCCHHHHHHH
T ss_pred             CcccCCCHHHHHHH
Confidence            99999999999864

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=2.5e-39  Score=309.26  Aligned_cols=246  Identities=16%  Similarity=0.196  Sum_probs=195.0

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      .++|++.+.||+|+||+||+|++.  +..||+|+++...   ...+.+.+|+++++.+      .|+||+++++++... 
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~--~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~~-   79 (271)
T 3kmu_A            9 FKQLNFLTKLNENHSGELWKGRWQ--GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIF------SHPNVLPVLGACQSP-   79 (271)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEET--TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCC------SCTTEECEEEEECTT-
T ss_pred             HHHhHHHHHhcCCCcceEEEEEEC--CeeEEEEEecccccCHHHHHHHHHHHHHHHhc------CCCchhheEEEEccC-
Confidence            378999999999999999999874  8899999887542   3345788888888888      799999999998764 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCC--cccccCCCCCeEeeecCCCCCCcc
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELG--IIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~g--IiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                       .....++||||+ +++|.+++.......+++..+..++.|++.||+|||++ |  |+||||||+||++           
T Consensus        80 -~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~~~i~H~dikp~Nil~-----------  146 (271)
T 3kmu_A           80 -PAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTL-EPLIPRHALNSRSVMI-----------  146 (271)
T ss_dssp             -TSSSCEEEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTS-SSCCTTCCCSGGGEEE-----------
T ss_pred             -CCCCeEeeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcC-CCceecCCCccceEEE-----------
Confidence             346889999999 78999999765444589999999999999999999996 9  9999999999999           


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                   +..+.++++||+++.... 
T Consensus       147 -------------------------------------------------------------~~~~~~~l~~~~~~~~~~-  164 (271)
T 3kmu_A          147 -------------------------------------------------------------DEDMTARISMADVKFSFQ-  164 (271)
T ss_dssp             -------------------------------------------------------------CTTSCEEEEGGGSCCTTS-
T ss_pred             -------------------------------------------------------------cCCcceeEEeccceeeec-
Confidence                                                                         335567888777764322 


Q ss_pred             ccccCCCCCCccChHHhhcCCCC---ccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          269 QFAEEIQTRQYRAPEVILRAGYS---FSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       269 ~~~~~~gt~~y~aPE~l~~~~~~---~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                       .....+|+.|+|||.+.+..++   .++|||||||++|+|++|..||...+      .......+.. .+         
T Consensus       165 -~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~------~~~~~~~~~~-~~---------  227 (271)
T 3kmu_A          165 -SPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLS------NMEIGMKVAL-EG---------  227 (271)
T ss_dssp             -CTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSC------HHHHHHHHHH-SC---------
T ss_pred             -ccCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccC------hHHHHHHHHh-cC---------
Confidence             2345789999999999876544   48999999999999999999997542      1111111110 00         


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                    .....+...+..+.+||.+||+.||++|||++|+++
T Consensus       228 ------------------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  263 (271)
T 3kmu_A          228 ------------------------------LRPTIPPGISPHVSKLMKICMNEDPAKRPKFDMIVP  263 (271)
T ss_dssp             ------------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ------------------------------CCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                                          011234456778999999999999999999999985

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.7e-39  Score=315.82  Aligned_cols=247  Identities=24%  Similarity=0.385  Sum_probs=190.5

Q ss_pred             ccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           33 FNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        33 ~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      +..++|++.+.||+|+||+||+|++.  ++.||+|.+.... ..+.+.+|+++++.+      .|+||+++++++.+   
T Consensus         5 i~~~~~~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~~-~~~~~~~E~~~l~~l------~hp~iv~~~~~~~~---   72 (307)
T 2eva_A            5 IDYKEIEVEEVVGRGAFGVVCKAKWR--AKDVAIKQIESES-ERKAFIVELRQLSRV------NHPNIVKLYGACLN---   72 (307)
T ss_dssp             CCGGGEEEEEEEECCSSSEEEEEEET--TEEEEEEECSSTT-HHHHHHHHHHHHHHC------CCTTBCCEEEBCTT---
T ss_pred             CCHhHeeeeeEeecCCCceEEEEEEC--CeeEEEEEecChh-HHHHHHHHHHHHhcC------CCCCcCeEEEEEcC---
Confidence            34578999999999999999999874  7889999887543 356788999999999      78999999998763   


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHh---hCCcccccCCCCCeEeeecCCCCCCc
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRY-KGLELNKVREICKYILTGLDYLHR---ELGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~-~~l~~~~~~~i~~qil~aL~~lH~---~~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                         ..++||||+ +++|.+++..... ..++...+..++.|++.||+|||+   + ||+||||||+||++..        
T Consensus        73 ---~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~-~ivH~dlkp~NIll~~--------  140 (307)
T 2eva_A           73 ---PVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPK-ALIHRDLKPPNLLLVA--------  140 (307)
T ss_dssp             ---TTEEEEECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSS-CCCCCCCSGGGEEEET--------
T ss_pred             ---CcEEEEEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCC-CeecCCCChhHEEEeC--------
Confidence               378999999 8899998865331 237888999999999999999999   6 9999999999999943        


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCccc-ceeEeecCccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDM-RCKVVDFGNACRA  266 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~kL~Dfg~a~~~  266 (447)
                                                                                      .. .+||+|||++...
T Consensus       141 ----------------------------------------------------------------~~~~~kl~Dfg~~~~~  156 (307)
T 2eva_A          141 ----------------------------------------------------------------GGTVLKICDFGTACDI  156 (307)
T ss_dssp             ----------------------------------------------------------------TTTEEEECCCCC----
T ss_pred             ----------------------------------------------------------------CCCEEEEccccccccc
Confidence                                                                            33 4799999999776


Q ss_pred             ccccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCC
Q 013220          267 NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  346 (447)
Q Consensus       267 ~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  346 (447)
                      ........||+.|+|||.+.+..++.++|||||||++|+|++|..||.....     ..  ..........         
T Consensus       157 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~-----~~--~~~~~~~~~~---------  220 (307)
T 2eva_A          157 QTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGG-----PA--FRIMWAVHNG---------  220 (307)
T ss_dssp             --------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCS-----SH--HHHHHHHHTT---------
T ss_pred             ccccccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCc-----cH--HHHHHHHhcC---------
Confidence            6555566799999999999998999999999999999999999999975421     11  1111111000         


Q ss_pred             CCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          347 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                   .....+...+..+.+||.+||+.||++|||+++++++
T Consensus       221 -----------------------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  257 (307)
T 2eva_A          221 -----------------------------TRPPLIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKI  257 (307)
T ss_dssp             -----------------------------CCCCCBTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -----------------------------CCCCcccccCHHHHHHHHHHhcCChhhCcCHHHHHHH
Confidence                                         0111233456789999999999999999999999874

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=3.1e-39  Score=316.09  Aligned_cols=252  Identities=26%  Similarity=0.367  Sum_probs=200.5

Q ss_pred             CCceEEEEeecccCceEEEEEEe-----CCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYD-----TRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~-----~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      .++|++.+.||+|+||+||+|++     ..+++.||+|+++...  ...+.+.+|+++++.+.     +|+||+++++++
T Consensus        26 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~hp~iv~~~~~~  100 (316)
T 2xir_A           26 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIG-----HHLNVVNLLGAC  100 (316)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHC-----CCTTBCCEEEEE
T ss_pred             hhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcc-----cCCCeeeEEEEE
Confidence            47999999999999999999984     4567999999987543  33457889999999995     689999999998


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhcc--------------CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCC
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSRY--------------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKP  172 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~--------------~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp  172 (447)
                      ...   +...++||||+ +++|.+++.....              ..+++..+..++.|++.||+|||++ ||+||||||
T Consensus       101 ~~~---~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~i~H~dikp  176 (316)
T 2xir_A          101 TKP---GGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR-KCIHRDLAA  176 (316)
T ss_dssp             CCT---TSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSG
T ss_pred             ecC---CCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC-CcccccCcc
Confidence            753   35689999999 7899998865432              1278899999999999999999997 999999999


Q ss_pred             CCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcc
Q 013220          173 ENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGID  252 (447)
Q Consensus       173 ~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (447)
                      +||++                                                                        +..
T Consensus       177 ~Nil~------------------------------------------------------------------------~~~  184 (316)
T 2xir_A          177 RNILL------------------------------------------------------------------------SEK  184 (316)
T ss_dssp             GGEEE------------------------------------------------------------------------CGG
T ss_pred             ceEEE------------------------------------------------------------------------CCC
Confidence            99999                                                                        345


Q ss_pred             cceeEeecCcccccccc-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchH
Q 013220          253 MRCKVVDFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDED  326 (447)
Q Consensus       253 ~~~kL~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~  326 (447)
                      ..++|+|||.+......     .....+|+.|+|||++.+..++.++|||||||++|+|++ |..||.....     ...
T Consensus       185 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~-----~~~  259 (316)
T 2xir_A          185 NVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI-----DEE  259 (316)
T ss_dssp             GCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCC-----SHH
T ss_pred             CCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccch-----hHH
Confidence            67999999999754322     122356789999999999999999999999999999998 9999976531     111


Q ss_pred             HHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCCh
Q 013220          327 HLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA  406 (447)
Q Consensus       327 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta  406 (447)
                      ....+..  +                                       .....+...+..+.++|.+||+.||.+|||+
T Consensus       260 ~~~~~~~--~---------------------------------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~  298 (316)
T 2xir_A          260 FCRRLKE--G---------------------------------------TRMRAPDYTTPEMYQTMLDCWHGEPSQRPTF  298 (316)
T ss_dssp             HHHHHHH--T---------------------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             HHHHhcc--C---------------------------------------ccCCCCCCCCHHHHHHHHHHcCCChhhCcCH
Confidence            1111111  0                                       0111334456789999999999999999999


Q ss_pred             HHHhcCc
Q 013220          407 QQCLQHP  413 (447)
Q Consensus       407 ~elL~hp  413 (447)
                      .|+++|-
T Consensus       299 ~ell~~L  305 (316)
T 2xir_A          299 SELVEHL  305 (316)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999873

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=2.8e-39  Score=332.25  Aligned_cols=273  Identities=23%  Similarity=0.337  Sum_probs=195.3

Q ss_pred             CccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           30 GDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        30 g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      +..++ +.|.+.+.||+|+||+||.+. ..+++.||||++..+.  .+.+.+|+++++.+.     +|+||+++++++..
T Consensus        10 ~~~l~-~~~~~~~~LG~G~~g~V~~~~-~~~g~~vAvK~~~~~~--~~~~~~E~~~l~~l~-----~HpnIv~~~~~~~~   80 (434)
T 2rio_A           10 EQSLK-NLVVSEKILGYGSSGTVVFQG-SFQGRPVAVKRMLIDF--CDIALMEIKLLTESD-----DHPNVIRYYCSETT   80 (434)
T ss_dssp             SCSCS-SCEEEEEEEEECSTTCEEEEE-ESSSSEEEEEEEEGGG--HHHHHHHHHHHHHHT-----TSTTBCCEEEEEEC
T ss_pred             hhhhh-heeeccCeEeeCCCeEEEEEE-EECCeEEEEEEEcHHH--HHHHHHHHHHHHhcc-----CCCCcCeEEEEEec
Confidence            33443 678889999999999998764 4578999999876543  356788999998764     79999999998874


Q ss_pred             cCCCcceEEEEEecccccHHHHHHhhccCC-----CCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCC
Q 013220          110 AGPNGQHLCMVLEFLGDSLLRLIKYSRYKG-----LELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~-----l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~  184 (447)
                          ...+|+|||||+++|.+++.......     ..+..+..++.||+.||+|||++ ||+||||||+||++...... 
T Consensus        81 ----~~~~~lv~E~~~gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivHrDLkp~NILl~~~~~~-  154 (434)
T 2rio_A           81 ----DRFLYIALELCNLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSL-KIIHRDLKPQNILVSTSSRF-  154 (434)
T ss_dssp             ----SSEEEEEECCCSEEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEECCHHH-
T ss_pred             ----CCeEEEEEecCCCCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHC-CccccCCChHhEEEecCccc-
Confidence                47899999999889999886543211     12234567999999999999996 99999999999999542000 


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                      .          ...........+||+|||++.
T Consensus       155 ------------------------------------------------~----------~~~~~~~~~~~~kL~DFG~a~  176 (434)
T 2rio_A          155 ------------------------------------------------T----------ADQQTGAENLRILISDFGLCK  176 (434)
T ss_dssp             ------------------------------------------------H----------SCCTTCCCSCEEEECCCTTCE
T ss_pred             ------------------------------------------------c----------cccccCCCceEEEEcccccce
Confidence                                                            0          000001235679999999997


Q ss_pred             ccccc-------cccCCCCCCccChHHhhc-------CCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHH
Q 013220          265 RANKQ-------FAEEIQTRQYRAPEVILR-------AGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLA  329 (447)
Q Consensus       265 ~~~~~-------~~~~~gt~~y~aPE~l~~-------~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~  329 (447)
                      .....       ....+||+.|+|||++.+       ..++.++|||||||++|+|++ |..||....       ... .
T Consensus       177 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~-------~~~-~  248 (434)
T 2rio_A          177 KLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKY-------SRE-S  248 (434)
T ss_dssp             ECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTT-------THH-H
T ss_pred             ecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCch-------hhH-H
Confidence            65432       123478999999999976       568999999999999999998 999996442       111 1


Q ss_pred             HHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHH
Q 013220          330 LMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQC  409 (447)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~el  409 (447)
                      .+..  +....                           ...      ....+...+.++.+||.+||+.||.+|||+.|+
T Consensus       249 ~i~~--~~~~~---------------------------~~~------~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ei  293 (434)
T 2rio_A          249 NIIR--GIFSL---------------------------DEM------KCLHDRSLIAEATDLISQMIDHDPLKRPTAMKV  293 (434)
T ss_dssp             HHHH--TCCCC---------------------------CCC------TTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             HHhc--CCCCc---------------------------ccc------cccccccchHHHHHHHHHHhhCChhhCCCHHHH
Confidence            1111  10000                           000      001234567889999999999999999999999


Q ss_pred             hcCcccccc
Q 013220          410 LQHPWLSLR  418 (447)
Q Consensus       410 L~hp~f~~~  418 (447)
                      |+||||...
T Consensus       294 l~hp~f~~~  302 (434)
T 2rio_A          294 LRHPLFWPK  302 (434)
T ss_dssp             HTSGGGSCH
T ss_pred             HhCCccCCc
Confidence            999999753

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3e-39  Score=320.65  Aligned_cols=255  Identities=19%  Similarity=0.282  Sum_probs=200.7

Q ss_pred             cCCceEEEEeecccCceEEEEEEe-----CCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccc
Q 013220           34 NGGRYIAQRKLGWGQFSIVWLAYD-----TRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDH  106 (447)
Q Consensus        34 ~~~~y~l~~~lG~G~~g~Vy~a~~-----~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~  106 (447)
                      ..++|++.+.||+|+||+||+|++     ..++..||+|+++...  ...+.+.+|+++++.+.     .|+||++++++
T Consensus        43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~hp~iv~~~~~  117 (344)
T 1rjb_A           43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLG-----SHENIVNLLGA  117 (344)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHC-----CCTTBCCEEEE
T ss_pred             CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhc-----CCCCeeeEEEE
Confidence            347899999999999999999986     3457789999987542  33567889999999995     68999999999


Q ss_pred             ccccCCCcceEEEEEecc-cccHHHHHHhhcc---------------------CCCCHHHHHHHHHHHHHHHHHHHhhCC
Q 013220          107 FKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRY---------------------KGLELNKVREICKYILTGLDYLHRELG  164 (447)
Q Consensus       107 ~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~---------------------~~l~~~~~~~i~~qil~aL~~lH~~~g  164 (447)
                      +...    ...++||||+ +++|.+++.....                     ..+++..+..++.||+.||+|||++ |
T Consensus       118 ~~~~----~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~  192 (344)
T 1rjb_A          118 CTLS----GPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK-S  192 (344)
T ss_dssp             ECSS----SSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             EeeC----CccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            8753    5799999999 8899998865432                     2378889999999999999999997 9


Q ss_pred             cccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCC
Q 013220          165 IIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKP  244 (447)
Q Consensus       165 IiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (447)
                      |+||||||+||++.                                                                  
T Consensus       193 ivH~Dikp~NIll~------------------------------------------------------------------  206 (344)
T 1rjb_A          193 CVHRDLAARNVLVT------------------------------------------------------------------  206 (344)
T ss_dssp             EEETTCSGGGEEEE------------------------------------------------------------------
T ss_pred             cccCCCChhhEEEc------------------------------------------------------------------
Confidence            99999999999993                                                                  


Q ss_pred             CccCCCcccceeEeecCccccccccc-----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCC
Q 013220          245 ERCLDGIDMRCKVVDFGNACRANKQF-----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSG  318 (447)
Q Consensus       245 ~~~~~~~~~~~kL~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~  318 (447)
                            ....++|+|||++.......     ....+|+.|+|||.+.+..++.++|||||||++|+|++ |..||...+.
T Consensus       207 ------~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~  280 (344)
T 1rjb_A          207 ------HGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPV  280 (344)
T ss_dssp             ------TTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC
T ss_pred             ------CCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCCc
Confidence                  35679999999997554321     22346788999999999999999999999999999998 9999976531


Q ss_pred             CCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhcccc
Q 013220          319 QGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDF  398 (447)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~  398 (447)
                            .......... +                                       .....+...++.+.+||.+||+.
T Consensus       281 ------~~~~~~~~~~-~---------------------------------------~~~~~~~~~~~~l~~li~~~l~~  314 (344)
T 1rjb_A          281 ------DANFYKLIQN-G---------------------------------------FKMDQPFYATEEIYIIMQSCWAF  314 (344)
T ss_dssp             ------SHHHHHHHHT-T---------------------------------------CCCCCCTTCCHHHHHHHHHHTCS
T ss_pred             ------HHHHHHHHhc-C---------------------------------------CCCCCCCCCCHHHHHHHHHHcCC
Confidence                  1111111110 0                                       01112344567899999999999


Q ss_pred             CCCCCCChHHHhcCcccc
Q 013220          399 TPEKRPTAQQCLQHPWLS  416 (447)
Q Consensus       399 dP~kRpta~elL~hp~f~  416 (447)
                      ||.+|||+.++++|..-.
T Consensus       315 dp~~Rps~~~l~~~l~~~  332 (344)
T 1rjb_A          315 DSRKRPSFPNLTSFLGCQ  332 (344)
T ss_dssp             SGGGSCCHHHHHHHHHHH
T ss_pred             CchhCcCHHHHHHHHHHH
Confidence            999999999999876543

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=2.3e-39  Score=318.33  Aligned_cols=259  Identities=22%  Similarity=0.357  Sum_probs=204.1

Q ss_pred             CCceEEEEeecccCceEEEEEEeC-----CCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDT-----RTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~-----~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      .++|++.+.||+|+||+||+|++.     .++..||+|++....  .....+.+|+++++.+      .|+||+++++++
T Consensus        24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~   97 (322)
T 1p4o_A           24 REKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEF------NCHHVVRLLGVV   97 (322)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGC------CCTTBCCEEEEE
T ss_pred             hhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhc------CCCCEeeeEEEE
Confidence            479999999999999999999876     357899999886542  3345688899999998      789999999998


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhc--------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEee
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSR--------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV  178 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~--------~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~  178 (447)
                      ..    ....++||||+ +++|.+++....        ...+++..+..++.|++.||+|||++ ||+||||||+||++ 
T Consensus        98 ~~----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~i~H~dikp~NIli-  171 (322)
T 1p4o_A           98 SQ----GQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN-KFVHRDLAARNCMV-  171 (322)
T ss_dssp             CS----SSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT-TCBCSCCSGGGEEE-
T ss_pred             cc----CCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC-CCccCCCccceEEE-
Confidence            74    36789999999 789999886532        13468899999999999999999997 99999999999999 


Q ss_pred             ecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEe
Q 013220          179 STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVV  258 (447)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~  258 (447)
                                                                                             +.++.++|+
T Consensus       172 -----------------------------------------------------------------------~~~~~~kl~  180 (322)
T 1p4o_A          172 -----------------------------------------------------------------------AEDFTVKIG  180 (322)
T ss_dssp             -----------------------------------------------------------------------CTTCCEEEC
T ss_pred             -----------------------------------------------------------------------cCCCeEEEC
Confidence                                                                                   345679999


Q ss_pred             ecCcccccccc-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHH
Q 013220          259 DFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMM  332 (447)
Q Consensus       259 Dfg~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~  332 (447)
                      |||++......     .....+|+.|+|||.+.+..++.++|||||||++|+|++ |..||...+      .......+.
T Consensus       181 Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~------~~~~~~~~~  254 (322)
T 1p4o_A          181 DFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLS------NEQVLRFVM  254 (322)
T ss_dssp             CTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSC------HHHHHHHHH
T ss_pred             cCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCC------HHHHHHHHH
Confidence            99999754322     122356888999999999999999999999999999999 899996542      111111111


Q ss_pred             HHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          333 ELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       333 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                      .  +.                                       ....+...+..+.+||.+||+.||++|||+.|+++|
T Consensus       255 ~--~~---------------------------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~  293 (322)
T 1p4o_A          255 E--GG---------------------------------------LLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISS  293 (322)
T ss_dssp             T--TC---------------------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             c--CC---------------------------------------cCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence            0  00                                       011234456789999999999999999999999977


Q ss_pred             ------cccccccCCcc
Q 013220          413 ------PWLSLRNSTRD  423 (447)
Q Consensus       413 ------p~f~~~~~~~~  423 (447)
                            +||+...-...
T Consensus       294 L~~~~~~~~~~~~~~~~  310 (322)
T 1p4o_A          294 IKEEMEPGFREVSFYYS  310 (322)
T ss_dssp             HGGGSCTTHHHHCSTTS
T ss_pred             HHHhhccCCcccccccc
Confidence                  77776554433

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=2.4e-39  Score=320.63  Aligned_cols=273  Identities=20%  Similarity=0.249  Sum_probs=208.5

Q ss_pred             CCCCCccccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcc
Q 013220           19 YRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEK   98 (447)
Q Consensus        19 ~~~~~~~~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~   98 (447)
                      ...+...|+.+++.++ ++|++.+.||+|+||+||+|++  +++.||+|++....  ...+.+|.++++.+.    ..|+
T Consensus        26 ~~~~~~~~~~~~~~~~-~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~--~~~~~~e~~~~~~~~----l~h~   96 (342)
T 1b6c_B           26 SGSGSGLPLLVQRTIA-RTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSRE--ERSWFREAEIYQTVM----LRHE   96 (342)
T ss_dssp             TTCCSSSCHHHHHHHH-HHCEEEEEEEEETTEEEEEEEE--TTEEEEEEEECGGG--HHHHHHHHHHHHHSC----CCCT
T ss_pred             cCCCCCCceeeccccc-ccEEEEeeecCCCCcEEEEEEE--cCccEEEEEeCchh--HHHHHHHHHHHHHhh----cCCC
Confidence            3456788999999997 7999999999999999999987  48999999987553  356778999888842    1899


Q ss_pred             eeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH--------hhCCccccc
Q 013220           99 CVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLH--------RELGIIHTD  169 (447)
Q Consensus        99 ~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH--------~~~gIiH~D  169 (447)
                      ||+++++++..........++||||+ +++|.+++...   .+++..+..++.|++.||+|||        +. ||+|||
T Consensus        97 ni~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~-~ivH~D  172 (342)
T 1b6c_B           97 NILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKP-AIAHRD  172 (342)
T ss_dssp             TBCCEEEEEECCCSSCCCEEEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC-EEECSC
T ss_pred             cEEEEEeeecccCCccceeEEEEeecCCCcHHHHHhcc---CccHHHHHHHHHHHHHHHHHHHHHHhhhcccC-CeeeCC
Confidence            99999999887643335899999999 77999988643   4899999999999999999999        75 999999


Q ss_pred             CCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCC
Q 013220          170 LKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLD  249 (447)
Q Consensus       170 ikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (447)
                      |||+||++                                                                        
T Consensus       173 lkp~NIll------------------------------------------------------------------------  180 (342)
T 1b6c_B          173 LKSKNILV------------------------------------------------------------------------  180 (342)
T ss_dssp             CSGGGEEE------------------------------------------------------------------------
T ss_pred             CCHHHEEE------------------------------------------------------------------------
Confidence            99999999                                                                        


Q ss_pred             CcccceeEeecCcccccccc-------cccCCCCCCccChHHhhcCC------CCccchhHhHHHHHHHHhhC-------
Q 013220          250 GIDMRCKVVDFGNACRANKQ-------FAEEIQTRQYRAPEVILRAG------YSFSVDMWSFACTAFELATG-------  309 (447)
Q Consensus       250 ~~~~~~kL~Dfg~a~~~~~~-------~~~~~gt~~y~aPE~l~~~~------~~~~~DiwSlGvil~~l~~g-------  309 (447)
                      +.+..++|+|||++......       .....||+.|+|||.+.+..      ++.++|||||||++|+|++|       
T Consensus       181 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~  260 (342)
T 1b6c_B          181 KKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIH  260 (342)
T ss_dssp             CTTSCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBC
T ss_pred             CCCCCEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcc
Confidence            34567999999999654432       23457899999999998652      33689999999999999999       


Q ss_pred             ---CCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHH
Q 013220          310 ---DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAR  386 (447)
Q Consensus       310 ---~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (447)
                         ..||........  ....+...... +.....+                            ..    . ......++
T Consensus       261 ~~~~~p~~~~~~~~~--~~~~~~~~~~~-~~~~~~~----------------------------~~----~-~~~~~~~~  304 (342)
T 1b6c_B          261 EDYQLPYYDLVPSDP--SVEEMRKVVCE-QKLRPNI----------------------------PN----R-WQSCEALR  304 (342)
T ss_dssp             CCCCCTTTTTSCSSC--CHHHHHHHHTT-SCCCCCC----------------------------CG----G-GGTSHHHH
T ss_pred             cccccCccccCcCcc--cHHHHHHHHHH-HHhCCCC----------------------------cc----c-ccchhHHH
Confidence               677765432110  11111111100 0000000                            00    0 01234567


Q ss_pred             HHHHHHhhccccCCCCCCChHHHhcC
Q 013220          387 EFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       387 ~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                      .+.+||.+||+.||++|||++|+++|
T Consensus       305 ~l~~li~~cl~~dp~~Rps~~~i~~~  330 (342)
T 1b6c_B          305 VMAKIMRECWYANGAARLTALRIKKT  330 (342)
T ss_dssp             HHHHHHHHHCCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHHhccChhhCCCHHHHHHH
Confidence            89999999999999999999999976

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=4.3e-39  Score=332.65  Aligned_cols=247  Identities=25%  Similarity=0.406  Sum_probs=201.5

Q ss_pred             ccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           33 FNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        33 ~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      +..++|++.++||+|+||+||+|.+. .+..||||+++......+.+.+|+++++.+      .|+||+++++++..   
T Consensus       185 i~~~~~~~~~~lG~G~fg~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~l~~~~~~---  254 (454)
T 1qcf_A          185 IPRESLKLEKKLGAGQFGEVWMATYN-KHTKVAVKTMKPGSMSVEAFLAEANVMKTL------QHDKLVKLHAVVTK---  254 (454)
T ss_dssp             CCGGGEEEEEEEECCSSEEEEEEEET-TTEEEEEEEECTTSBCHHHHHHHHHHHTTC------CCTTBCCEEEEECS---
T ss_pred             echHHeEEEEEcccCCceEEEEEEEC-CccEEEEEEecCCCccHHHHHHHHHHHhhC------CCCCEeeEEEEEeC---
Confidence            34578999999999999999999875 467899999987666677899999999999      78999999998752   


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                        ...++||||| +++|.+++.......+++..+..++.||+.||+|||++ ||+||||||+|||+              
T Consensus       255 --~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~-~ivHrDlkp~Nill--------------  317 (454)
T 1qcf_A          255 --EPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR-NYIHRDLRAANILV--------------  317 (454)
T ss_dssp             --SSCEEEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHT-TCCCSSCSGGGEEE--------------
T ss_pred             --CccEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC-CccCCCCCHHHEEE--------------
Confidence              4689999999 88999998754434588899999999999999999997 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                +....+||+|||++......  
T Consensus       318 ----------------------------------------------------------~~~~~~kl~DFG~a~~~~~~~~  339 (454)
T 1qcf_A          318 ----------------------------------------------------------SASLVCKIADFGLARVIEDNEY  339 (454)
T ss_dssp             ----------------------------------------------------------CTTCCEEECSTTGGGGBCCHHH
T ss_pred             ----------------------------------------------------------CCCCcEEEeeCCCceEcCCCce
Confidence                                                                      34567999999999765422  


Q ss_pred             --cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCC
Q 013220          270 --FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  346 (447)
Q Consensus       270 --~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  346 (447)
                        .....+|..|+|||++....++.++|||||||++|+|++ |..||.+.+      .......+..  +          
T Consensus       340 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~------~~~~~~~i~~--~----------  401 (454)
T 1qcf_A          340 TAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMS------NPEVIRALER--G----------  401 (454)
T ss_dssp             HTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC------HHHHHHHHHH--T----------
T ss_pred             eccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHc--C----------
Confidence              222345778999999998899999999999999999999 999997652      2222221111  0          


Q ss_pred             CCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          347 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                   .....+...++.+.+||.+||+.||++|||++++++
T Consensus       402 -----------------------------~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~  437 (454)
T 1qcf_A          402 -----------------------------YRMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQS  437 (454)
T ss_dssp             -----------------------------CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -----------------------------CCCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHH
Confidence                                         011233455778999999999999999999999975

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=2.3e-39  Score=319.63  Aligned_cols=261  Identities=21%  Similarity=0.318  Sum_probs=201.4

Q ss_pred             CccccCCceEEEEeecccCceEEEEEE-----eCCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeee
Q 013220           30 GDLFNGGRYIAQRKLGWGQFSIVWLAY-----DTRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIR  102 (447)
Q Consensus        30 g~~~~~~~y~l~~~lG~G~~g~Vy~a~-----~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~  102 (447)
                      .++. .++|++.+.||+|+||+||+|+     +..++..||+|++...  ......+.+|+.+++.+      .|+||++
T Consensus        25 ~~~~-~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~   97 (327)
T 2yfx_A           25 KEVP-RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKF------NHQNIVR   97 (327)
T ss_dssp             CBCC-GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHC------CCTTBCC
T ss_pred             ccCC-hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhC------CCCCCCe
Confidence            3444 3799999999999999999998     4567889999987532  34456788999999999      7999999


Q ss_pred             ecccccccCCCcceEEEEEecc-cccHHHHHHhhcc-----CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeE
Q 013220          103 LIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRY-----KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL  176 (447)
Q Consensus       103 ~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~-----~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nil  176 (447)
                      +++++...    ...++||||+ +++|.+++.....     ..+++..+..++.|++.||+|||++ ||+||||||+||+
T Consensus        98 ~~~~~~~~----~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~-~i~H~dlkp~NIl  172 (327)
T 2yfx_A           98 CIGVSLQS----LPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN-HFIHRDIAARNCL  172 (327)
T ss_dssp             EEEEECSS----SSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEE
T ss_pred             EEEEEcCC----CCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhC-CeecCcCCHhHEE
Confidence            99998753    5789999999 8899999876432     3488899999999999999999996 9999999999999


Q ss_pred             eeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCccccee
Q 013220          177 LVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCK  256 (447)
Q Consensus       177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  256 (447)
                      +...                                                                     .....++
T Consensus       173 i~~~---------------------------------------------------------------------~~~~~~k  183 (327)
T 2yfx_A          173 LTCP---------------------------------------------------------------------GPGRVAK  183 (327)
T ss_dssp             ESCS---------------------------------------------------------------------STTCCEE
T ss_pred             EecC---------------------------------------------------------------------CCcceEE
Confidence            9431                                                                     1245699


Q ss_pred             EeecCcccccccc-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHH
Q 013220          257 VVDFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLAL  330 (447)
Q Consensus       257 L~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~  330 (447)
                      |+|||++......     .....+++.|+|||.+.+..++.++|||||||++|+|++ |..||...+      .......
T Consensus       184 l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~------~~~~~~~  257 (327)
T 2yfx_A          184 IGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKS------NQEVLEF  257 (327)
T ss_dssp             ECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC------HHHHHHH
T ss_pred             ECccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcC------HHHHHHH
Confidence            9999998643221     223457889999999999899999999999999999998 999997542      1111111


Q ss_pred             HHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHh
Q 013220          331 MMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCL  410 (447)
Q Consensus       331 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL  410 (447)
                      +..  +                                       .....+...+..+.+||.+||+.||++|||+++++
T Consensus       258 ~~~--~---------------------------------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll  296 (327)
T 2yfx_A          258 VTS--G---------------------------------------GRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIIL  296 (327)
T ss_dssp             HHT--T---------------------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             Hhc--C---------------------------------------CCCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHH
Confidence            110  0                                       01112344567899999999999999999999999


Q ss_pred             cCcccccc
Q 013220          411 QHPWLSLR  418 (447)
Q Consensus       411 ~hp~f~~~  418 (447)
                      +|.|+-..
T Consensus       297 ~~l~~~~~  304 (327)
T 2yfx_A          297 ERIEYCTQ  304 (327)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99987643

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=9.5e-40  Score=320.34  Aligned_cols=256  Identities=25%  Similarity=0.342  Sum_probs=198.8

Q ss_pred             cCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEech-hHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           34 NGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKS-AAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        34 ~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~-~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      .+++|++.+.||+|+||.||+|++..+++.||+|++.. .....+.+.+|+++++.+      .|+||+++++++.....
T Consensus        27 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~~~~  100 (317)
T 2buj_A           27 DNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLF------NHPNILRLVAYCLRERG  100 (317)
T ss_dssp             TTEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTC------CCTTBCCCCEEEEEEET
T ss_pred             CCeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhc------CCCCeeeEEEEEEeccC
Confidence            46899999999999999999999999999999997653 334466788999999999      79999999999875444


Q ss_pred             CcceEEEEEecc-cccHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~--~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                      .....++||||+ +++|.+++...  ....+++..+..++.|++.||+|||++ ||+||||||+||++            
T Consensus       101 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~-~ivH~dlkp~NIl~------------  167 (317)
T 2buj_A          101 AKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAK-GYAHRDLKPTNILL------------  167 (317)
T ss_dssp             TEEEEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEE------------
T ss_pred             CCceeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCHHHEEE------------
Confidence            456899999999 77999888653  234589999999999999999999997 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                  +....++|+|||.+......
T Consensus       168 ------------------------------------------------------------~~~~~~kl~dfg~~~~~~~~  187 (317)
T 2buj_A          168 ------------------------------------------------------------GDEGQPVLMDLGSMNQACIH  187 (317)
T ss_dssp             ------------------------------------------------------------CTTSCEEECCCSSCEESCEE
T ss_pred             ------------------------------------------------------------cCCCCEEEEecCcchhcccc
Confidence                                                                        34567999999988644311


Q ss_pred             ------------cccCCCCCCccChHHhhcCC---CCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHH
Q 013220          270 ------------FAEEIQTRQYRAPEVILRAG---YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMEL  334 (447)
Q Consensus       270 ------------~~~~~gt~~y~aPE~l~~~~---~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~  334 (447)
                                  .....||+.|+|||.+.+..   ++.++|||||||++|+|++|..||.......     ........ 
T Consensus       188 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~-----~~~~~~~~-  261 (317)
T 2buj_A          188 VEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKG-----DSVALAVQ-  261 (317)
T ss_dssp             EESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTT-----SCHHHHHH-
T ss_pred             cccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhccc-----chhhHHhh-
Confidence                        11235799999999987543   6899999999999999999999995321000     00000000 


Q ss_pred             hCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCc
Q 013220          335 IGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP  413 (447)
Q Consensus       335 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp  413 (447)
                       .                                      ......+...+..+.+||.+||+.||.+|||+++++++-
T Consensus       262 -~--------------------------------------~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L  301 (317)
T 2buj_A          262 -N--------------------------------------QLSIPQSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQL  301 (317)
T ss_dssp             -C--------------------------------------C--CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             -c--------------------------------------cCCCCccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHh
Confidence             0                                      000112234567899999999999999999999999863

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=9.3e-39  Score=308.16  Aligned_cols=246  Identities=19%  Similarity=0.275  Sum_probs=196.0

Q ss_pred             CCceEEEEeecccCceEEEEEEeCC---CCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTR---TSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~---~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      .++|++.+.||+|+||+||+|++..   ++..||+|++...  ....+.+.+|+++++.+      .|+||+++++++..
T Consensus        11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~   84 (281)
T 3cc6_A           11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNL------DHPHIVKLIGIIEE   84 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHH------CCTTBCCEEEEECS
T ss_pred             ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhC------CCCCcceEEEEEcC
Confidence            4789999999999999999998543   3557999988754  34456789999999999      78999999998764


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                           ...++||||+ +++|.+++.... ..+++..+..++.|++.||+|||++ ||+||||||+||++..         
T Consensus        85 -----~~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dlkp~Nil~~~---------  148 (281)
T 3cc6_A           85 -----EPTWIIMELYPYGELGHYLERNK-NSLKVLTLVLYSLQICKAMAYLESI-NCVHRDIAVRNILVAS---------  148 (281)
T ss_dssp             -----SSCEEEEECCTTCBHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSGGGEEEEE---------
T ss_pred             -----CCCEEEEecCCCCCHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCccceEEECC---------
Confidence                 3468999999 789998886543 4589999999999999999999996 9999999999999943         


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                     +..++|+|||.+.....
T Consensus       149 ---------------------------------------------------------------~~~~kl~Dfg~~~~~~~  165 (281)
T 3cc6_A          149 ---------------------------------------------------------------PECVKLGDFGLSRYIED  165 (281)
T ss_dssp             ---------------------------------------------------------------TTEEEECCCCGGGCC--
T ss_pred             ---------------------------------------------------------------CCcEEeCccCCCccccc
Confidence                                                                           56799999999976543


Q ss_pred             cc----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhh
Q 013220          269 QF----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  343 (447)
Q Consensus       269 ~~----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  343 (447)
                      ..    ....+++.|+|||.+.+..++.++|||||||++|+|++ |..||....      .......+...         
T Consensus       166 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~------~~~~~~~~~~~---------  230 (281)
T 3cc6_A          166 EDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLE------NKDVIGVLEKG---------  230 (281)
T ss_dssp             -------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC------GGGHHHHHHHT---------
T ss_pred             ccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCC------hHHHHHHHhcC---------
Confidence            21    23356788999999998899999999999999999998 999997542      11121111110         


Q ss_pred             hCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          344 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                      .....+...++.+.+||.+||+.||++|||+.|++++
T Consensus       231 --------------------------------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~  267 (281)
T 3cc6_A          231 --------------------------------DRLPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCS  267 (281)
T ss_dssp             --------------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             --------------------------------CCCCCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHH
Confidence                                            0111234456789999999999999999999999875

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=2.6e-39  Score=338.01  Aligned_cols=247  Identities=21%  Similarity=0.318  Sum_probs=204.5

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      ..+|++.++||+|+||.||+|++..++..||||+++......+.+.+|+++++.+      .|+||+++++++...    
T Consensus       219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l------~hpniv~l~~~~~~~----  288 (495)
T 1opk_A          219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEI------KHPNLVQLLGVCTRE----  288 (495)
T ss_dssp             GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHC------CCTTBCCEEEEECSS----
T ss_pred             HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcccchHHHHHHHHHHHhc------CCCCEeeEEEEEecC----
Confidence            4679999999999999999999998899999999987766677899999999999      799999999998753    


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ..+++||||+ +++|.+++.......+++..+..++.||+.||+|||++ ||+||||||+|||+                
T Consensus       289 ~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~-~ivHrDlkp~NIll----------------  351 (495)
T 1opk_A          289 PPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK-NFIHRNLAARNCLV----------------  351 (495)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEE----------------
T ss_pred             CcEEEEEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCChhhEEE----------------
Confidence            6799999999 78999998765545689999999999999999999997 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc----
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----  269 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~----  269 (447)
                                                                              +....+||+|||++......    
T Consensus       352 --------------------------------------------------------~~~~~~kl~DFG~a~~~~~~~~~~  375 (495)
T 1opk_A          352 --------------------------------------------------------GENHLVKVADFGLSRLMTGDTYTA  375 (495)
T ss_dssp             --------------------------------------------------------CGGGCEEECCTTCEECCTTCCEEC
T ss_pred             --------------------------------------------------------CCCCcEEEeecccceeccCCceee
Confidence                                                                    44677999999999765432    


Q ss_pred             cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          270 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      .....++..|+|||.+.+..++.++|||||||++|+|++ |..||...+      .......+..   .           
T Consensus       376 ~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~------~~~~~~~~~~---~-----------  435 (495)
T 1opk_A          376 HAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID------LSQVYELLEK---D-----------  435 (495)
T ss_dssp             CTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC------GGGHHHHHHT---T-----------
T ss_pred             cCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHc---C-----------
Confidence            122345678999999998889999999999999999998 999997653      1111111110   0           


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                 .+...+..+++.+.+||.+||+.||++|||++++++
T Consensus       436 ---------------------------~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~  471 (495)
T 1opk_A          436 ---------------------------YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQ  471 (495)
T ss_dssp             ---------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ---------------------------CCCCCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHH
Confidence                                       011234456778999999999999999999999975

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=4.2e-39  Score=310.02  Aligned_cols=245  Identities=23%  Similarity=0.384  Sum_probs=198.9

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      .++|++.+.||+|+||+||+|++. ++..||+|+++......+.+.+|+++++.+      .|+||+++++++..     
T Consensus        12 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~-----   79 (279)
T 1qpc_A           12 RETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLKQGSMSPDAFLAEANLMKQL------QHQRLVRLYAVVTQ-----   79 (279)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTSSCHHHHHHHHHHHHHC------CCTTBCCEEEEECS-----
T ss_pred             HHhhhheeeecCCCCeEEEEEEEc-CCcEEEEEEecCCcccHHHHHHHHHHHHhC------CCcCcceEEEEEcC-----
Confidence            478999999999999999999875 567899999887665567899999999999      78999999998763     


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ...++||||+ +++|.+++.......+++..+..++.|++.||+|||++ ||+||||||+||++                
T Consensus        80 ~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~i~H~dikp~Nil~----------------  142 (279)
T 1qpc_A           80 EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER-NYIHRDLRAANILV----------------  142 (279)
T ss_dssp             SSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEE----------------
T ss_pred             CCcEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCCHhhEEE----------------
Confidence            3589999999 88999988654333589999999999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc---
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF---  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~---  270 (447)
                                                                              +....++|+|||.+.......   
T Consensus       143 --------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~~  166 (279)
T 1qpc_A          143 --------------------------------------------------------SDTLSCKIADFGLARLIEDNEYTA  166 (279)
T ss_dssp             --------------------------------------------------------CTTSCEEECCCTTCEECSSSCEEC
T ss_pred             --------------------------------------------------------cCCCCEEECCCcccccccCccccc
Confidence                                                                    345679999999997654321   


Q ss_pred             -ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          271 -AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       271 -~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                       ....++..|+|||.+.+..++.++|||||||++|+|++ |..||...+      .......+.+   .           
T Consensus       167 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~------~~~~~~~~~~---~-----------  226 (279)
T 1qpc_A          167 REGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMT------NPEVIQNLER---G-----------  226 (279)
T ss_dssp             CTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCC------HHHHHHHHHT---T-----------
T ss_pred             ccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccC------HHHHHHHHhc---c-----------
Confidence             22346788999999998889999999999999999999 999997542      1111111110   0           


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                 .....+...+..+.+||.+||+.||++|||++++++
T Consensus       227 ---------------------------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~  262 (279)
T 1qpc_A          227 ---------------------------YRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRS  262 (279)
T ss_dssp             ---------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ---------------------------cCCCCcccccHHHHHHHHHHhccChhhCCCHHHHHH
Confidence                                       001123345678999999999999999999999986

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=5.1e-39  Score=311.64  Aligned_cols=253  Identities=26%  Similarity=0.417  Sum_probs=189.0

Q ss_pred             ccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeec
Q 013220           28 RVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLI  104 (447)
Q Consensus        28 ~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~  104 (447)
                      ..|++.+ ++|++.++||+|+||+||+|++..   .||+|+++..   ....+.+.+|+++++.+      .|+||++++
T Consensus        17 ~~~ei~~-~~y~~~~~lG~G~~g~Vy~~~~~~---~vavK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~   86 (289)
T 3og7_A           17 DDWEIPD-GQITVGQRIGSGSFGTVYKGKWHG---DVAVKMLNVTAPTPQQLQAFKNEVGVLRKT------RHVNILLFM   86 (289)
T ss_dssp             -CCBCCT-TSCEEEEEEEECSSEEEEEEESSS---EEEEEEESCSSCCHHHHHHHHHHHHHHTTC------CCTTBCCEE
T ss_pred             CCCccCc-cceeeeeEecCCCCeEEEEEEEcC---ceEEEEEeccCCCHHHHHHHHHHHHHHHhC------CCCcEEEEE
Confidence            4567775 899999999999999999997643   5999987643   33456788999999998      789999999


Q ss_pred             ccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCC
Q 013220          105 DHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP  183 (447)
Q Consensus       105 ~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~  183 (447)
                      ++..     ....++||||+ +++|.+.+.... ..+++..+..++.|++.||+|||++ ||+||||||+||++.     
T Consensus        87 ~~~~-----~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~L~~lH~~-~i~H~Dlkp~Nil~~-----  154 (289)
T 3og7_A           87 GYST-----APQLAIVTQWCEGSSLYHHLHASE-TKFEMKKLIDIARQTARGMDYLHAK-SIIHRDLKSNNIFLH-----  154 (289)
T ss_dssp             EEEC-----SSSCEEEEECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEE-----
T ss_pred             eecc-----CCccEEEEEecCCCcHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHhC-CcccccCccceEEEC-----
Confidence            8643     24689999999 789988885432 4589999999999999999999996 999999999999993     


Q ss_pred             CCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcc
Q 013220          184 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  263 (447)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a  263 (447)
                                                                                         ....++|+|||++
T Consensus       155 -------------------------------------------------------------------~~~~~kl~Dfg~~  167 (289)
T 3og7_A          155 -------------------------------------------------------------------EDNTVKIGDFGLA  167 (289)
T ss_dssp             -------------------------------------------------------------------TTTEEEECCCC--
T ss_pred             -------------------------------------------------------------------CCCCEEEccceec
Confidence                                                                               3567999999998


Q ss_pred             ccccc-----ccccCCCCCCccChHHhh---cCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHh
Q 013220          264 CRANK-----QFAEEIQTRQYRAPEVIL---RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI  335 (447)
Q Consensus       264 ~~~~~-----~~~~~~gt~~y~aPE~l~---~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~  335 (447)
                      .....     ......||+.|+|||.+.   +..++.++|||||||++|+|++|..||....      ....+...... 
T Consensus       168 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~------~~~~~~~~~~~-  240 (289)
T 3og7_A          168 TEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNIN------NRDQIIEMVGR-  240 (289)
T ss_dssp             ----------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCC------CHHHHHHHHHH-
T ss_pred             cccccccccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccc------hHHHHHHHhcc-
Confidence            65432     223346899999999996   5568899999999999999999999997652      22222222211 


Q ss_pred             CCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          336 GKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       336 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                      +..+..                                   ........++.+.+||.+||+.||++|||++++++
T Consensus       241 ~~~~~~-----------------------------------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~  281 (289)
T 3og7_A          241 GSLSPD-----------------------------------LSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILA  281 (289)
T ss_dssp             TSCCCC-----------------------------------TTSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             cccCcc-----------------------------------hhhccccCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence            111100                                   00122345678999999999999999999999985

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=2e-38  Score=310.14  Aligned_cols=259  Identities=25%  Similarity=0.341  Sum_probs=192.8

Q ss_pred             ccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEech----hHHhHHHHHHHHHHHHHhhcCCCCCcceee
Q 013220           26 AVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKS----AAQFAQAALHEIEVLSAVADGDPSNEKCVI  101 (447)
Q Consensus        26 ~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~----~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv  101 (447)
                      ....|.... ++|++.+.||+|+||.||+|.+..++..||+|++..    .......+.+|+++++.+      .|+||+
T Consensus        23 ~~~~~~~~~-~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~   95 (310)
T 2wqm_A           23 RPDMGYNTL-ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQL------NHPNVI   95 (310)
T ss_dssp             CGGGTTSSG-GGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTC------CCTTBC
T ss_pred             CCCcccccc-cceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhC------CCCCEe
Confidence            334454443 689999999999999999999999999999998764    234456788999999999      789999


Q ss_pred             eecccccccCCCcceEEEEEecc-cccHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEee
Q 013220          102 RLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV  178 (447)
Q Consensus       102 ~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~--~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~  178 (447)
                      ++++++...    ...++||||+ +++|.+++...  ....+++..+..++.|++.||+|||++ ||+||||||+||++ 
T Consensus        96 ~~~~~~~~~----~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~-~i~H~dl~p~NIl~-  169 (310)
T 2wqm_A           96 KYYASFIED----NELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSR-RVMHRDIKPANVFI-  169 (310)
T ss_dssp             CEEEEEEET----TEEEEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEE-
T ss_pred             eEEEEEEcC----CcEEEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhC-CeeCCCCcHHHEEE-
Confidence            999998853    6899999999 77999888642  234589999999999999999999997 99999999999999 


Q ss_pred             ecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEe
Q 013220          179 STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVV  258 (447)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~  258 (447)
                                                                                             +..+.++|+
T Consensus       170 -----------------------------------------------------------------------~~~~~~kl~  178 (310)
T 2wqm_A          170 -----------------------------------------------------------------------TATGVVKLG  178 (310)
T ss_dssp             -----------------------------------------------------------------------CTTSCEEEC
T ss_pred             -----------------------------------------------------------------------cCCCCEEEE
Confidence                                                                                   345679999


Q ss_pred             ecCcccccccc---cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHh
Q 013220          259 DFGNACRANKQ---FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI  335 (447)
Q Consensus       259 Dfg~a~~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~  335 (447)
                      |||++......   .....+++.|+|||.+.+..++.++|||||||++|+|++|..||.....     ....+...... 
T Consensus       179 Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~-----~~~~~~~~~~~-  252 (310)
T 2wqm_A          179 DLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKM-----NLYSLCKKIEQ-  252 (310)
T ss_dssp             CC------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---C-----CHHHHHHHHHT-
T ss_pred             eccceeeecCCCccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccch-----hHHHHHHHhhc-
Confidence            99998654432   2234689999999999998899999999999999999999999975421     11111111100 


Q ss_pred             CCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          336 GKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       336 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                      +..+                                      .......+.++.+||.+||+.||++|||+++++++
T Consensus       253 ~~~~--------------------------------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~  291 (310)
T 2wqm_A          253 CDYP--------------------------------------PLPSDHYSEELRQLVNMCINPDPEKRPDVTYVYDV  291 (310)
T ss_dssp             TCSC--------------------------------------CCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ccCC--------------------------------------CCcccccCHHHHHHHHHHcCCChhhCCCHHHHHHH
Confidence            0000                                      00112346689999999999999999999999863

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=8e-39  Score=309.77  Aligned_cols=248  Identities=21%  Similarity=0.349  Sum_probs=198.6

Q ss_pred             CCceEEEE-eecccCceEEEEEEeC--CCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           35 GGRYIAQR-KLGWGQFSIVWLAYDT--RTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        35 ~~~y~l~~-~lG~G~~g~Vy~a~~~--~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      .++|.+.+ .||+|+||+||+|.+.  .++..||+|+++..  ....+.+.+|+++++.+      .|+||+++++++..
T Consensus         8 ~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~   81 (287)
T 1u59_A            8 RDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQL------DNPYIVRLIGVCQA   81 (287)
T ss_dssp             GGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHC------CCTTBCCEEEEEES
T ss_pred             HHHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhC------CCCCEeEEEEEecC
Confidence            46788877 9999999999999754  46788999998763  34466788999999999      78999999999843


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                           ...++||||+ +++|.+++... ...+++..+..++.|++.||+|||++ ||+||||||+||++..         
T Consensus        82 -----~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~Nili~~---------  145 (287)
T 1u59_A           82 -----EALMLVMEMAGGGPLHKFLVGK-REEIPVSNVAELLHQVSMGMKYLEEK-NFVHRDLAARNVLLVN---------  145 (287)
T ss_dssp             -----SSEEEEEECCTTEEHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEEE---------
T ss_pred             -----CCcEEEEEeCCCCCHHHHHHhC-CccCCHHHHHHHHHHHHHHHHHHHHC-CEeeCCCchheEEEcC---------
Confidence                 4689999999 77999887543 24589999999999999999999997 9999999999999943         


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                     ...++|+|||++.....
T Consensus       146 ---------------------------------------------------------------~~~~kl~Dfg~~~~~~~  162 (287)
T 1u59_A          146 ---------------------------------------------------------------RHYAKISDFGLSKALGA  162 (287)
T ss_dssp             ---------------------------------------------------------------TTEEEECCCTTCEECTT
T ss_pred             ---------------------------------------------------------------CCCEEECcccceeeecc
Confidence                                                                           56799999999976532


Q ss_pred             c------cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          269 Q------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       269 ~------~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                      .      .....+|+.|+|||.+.+..++.++|||||||++|+|++ |..||...+      .......+..  +     
T Consensus       163 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~------~~~~~~~i~~--~-----  229 (287)
T 1u59_A          163 DDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK------GPEVMAFIEQ--G-----  229 (287)
T ss_dssp             CSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC------THHHHHHHHT--T-----
T ss_pred             CcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCC------HHHHHHHHhc--C-----
Confidence            2      122345789999999998889999999999999999998 999997652      1111111110  0     


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcc
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW  414 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~  414 (447)
                                                        .....+...++.+.+||.+||+.||++|||+.+++++.+
T Consensus       230 ----------------------------------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~  268 (287)
T 1u59_A          230 ----------------------------------KRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMR  268 (287)
T ss_dssp             ----------------------------------CCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHH
T ss_pred             ----------------------------------CcCCCCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence                                              011234556778999999999999999999999998753

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1e-38  Score=312.77  Aligned_cols=252  Identities=25%  Similarity=0.351  Sum_probs=189.4

Q ss_pred             ccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeee
Q 013220           28 RVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRL  103 (447)
Q Consensus        28 ~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~  103 (447)
                      ..|..+  ++|++.+.||+|+||.||+|++..+++.||+|++....    ...+.+.+|+++++.+      .|+||+++
T Consensus        28 ~~~~~~--~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l------~hp~iv~~   99 (309)
T 2h34_A           28 REGTQF--GPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRL------QEPHVVPI   99 (309)
T ss_dssp             --------CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTC------CCTTBCCE
T ss_pred             CCCcEe--ccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhc------CCCCeeEE
Confidence            456666  68999999999999999999999999999999987542    2346788899999988      78999999


Q ss_pred             cccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCC
Q 013220          104 IDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTID  182 (447)
Q Consensus       104 ~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~  182 (447)
                      ++++...    ...++||||+ +++|.+++...  ..+++..+..++.|++.||+|||++ ||+||||||+||++     
T Consensus       100 ~~~~~~~----~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH~~-~i~H~dlkp~NIl~-----  167 (309)
T 2h34_A          100 HDFGEID----GQLYVDMRLINGVDLAAMLRRQ--GPLAPPRAVAIVRQIGSALDAAHAA-GATHRDVKPENILV-----  167 (309)
T ss_dssp             EEEEEET----TEEEEEEECCCCEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEE-----
T ss_pred             EEEEeeC----CeEEEEEEecCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-cCCcCCCChHHEEE-----
Confidence            9998753    6899999999 77999988754  3589999999999999999999996 99999999999999     


Q ss_pred             CCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCc
Q 013220          183 PSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGN  262 (447)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~  262 (447)
                                                                                         +.+..++|+|||+
T Consensus       168 -------------------------------------------------------------------~~~~~~kl~Dfg~  180 (309)
T 2h34_A          168 -------------------------------------------------------------------SADDFAYLVDFGI  180 (309)
T ss_dssp             -------------------------------------------------------------------CTTSCEEECSCCC
T ss_pred             -------------------------------------------------------------------cCCCCEEEecCcc
Confidence                                                                               3356799999999


Q ss_pred             ccccccc----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCC
Q 013220          263 ACRANKQ----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKM  338 (447)
Q Consensus       263 a~~~~~~----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~  338 (447)
                      +......    .....+++.|+|||.+.+..++.++|||||||++|+|++|..||...+       ...+....  ....
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-------~~~~~~~~--~~~~  251 (309)
T 2h34_A          181 ASATTDEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQ-------LSVMGAHI--NQAI  251 (309)
T ss_dssp             ----------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCH-------HHHHHHHH--HSCC
T ss_pred             CccccccccccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCch-------HHHHHHHh--ccCC
Confidence            8654432    223468999999999998889999999999999999999999997542       11111111  1111


Q ss_pred             CHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC-ChHHHhc
Q 013220          339 PRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-TAQQCLQ  411 (447)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp-ta~elL~  411 (447)
                      +.                                    ....+...+..+.+||.+||+.||++|| |++++++
T Consensus       252 ~~------------------------------------~~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~  289 (309)
T 2h34_A          252 PR------------------------------------PSTVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSA  289 (309)
T ss_dssp             CC------------------------------------GGGTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHH
T ss_pred             CC------------------------------------ccccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHH
Confidence            00                                    0012334566899999999999999999 7777764

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=2.9e-39  Score=318.05  Aligned_cols=262  Identities=23%  Similarity=0.305  Sum_probs=201.8

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh-HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA-AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      ++|++.+.||+|+||+||+|++. +++.||+|..... ....+.+.+|+++++.+      .|+||+++++++..    .
T Consensus        39 ~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~----~  107 (321)
T 2qkw_B           39 NNFDHKFLIGHGVFGKVYKGVLR-DGAKVALKRRTPESSQGIEEFETEIETLSFC------RHPHLVSLIGFCDE----R  107 (321)
T ss_dssp             CCCSCCCCSCBCSSSEEEEEECT-TCCEEEEEECCSCCSSHHHHHHHHHHGGGSC------CCTTBCCEEEECCC----T
T ss_pred             hccCccceeecCCCeeEEEEEEC-CCCEEEEEEecccChHHHHHHHHHHHHHHhC------CCCCEeeEEEEEcC----C
Confidence            68999999999999999999864 6889999976643 23356788999999888      78999999999874    3


Q ss_pred             ceEEEEEecc-cccHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSR--YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~--~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                      ...++||||+ +++|.+.+....  ...+++..+..++.|++.||+|||++ ||+||||||+||++              
T Consensus       108 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~-~ivH~dlkp~Nil~--------------  172 (321)
T 2qkw_B          108 NEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTR-AIIHRDVKSINILL--------------  172 (321)
T ss_dssp             TCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCSTTEEE--------------
T ss_pred             CeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCC-CeecCCCCHHHEEE--------------
Confidence            6899999999 789988775432  12488999999999999999999997 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                +.++.+||+|||++......  
T Consensus       173 ----------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~  194 (321)
T 2qkw_B          173 ----------------------------------------------------------DENFVPKITDFGISKKGTELDQ  194 (321)
T ss_dssp             ----------------------------------------------------------CTTCCEEECCCTTCEECSSSSC
T ss_pred             ----------------------------------------------------------CCCCCEEEeecccccccccccc
Confidence                                                                      44678999999999754321  


Q ss_pred             ---cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCC
Q 013220          270 ---FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  346 (447)
Q Consensus       270 ---~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  346 (447)
                         .....||+.|+|||.+.+..++.++|||||||++|+|++|+.||..........   ............        
T Consensus       195 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~---~~~~~~~~~~~~--------  263 (321)
T 2qkw_B          195 THLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVN---LAEWAVESHNNG--------  263 (321)
T ss_dssp             CCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCC---HHHHTHHHHTTT--------
T ss_pred             cccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHH---HHHHhhhccccc--------
Confidence               123357999999999999899999999999999999999999998664332211   111100000000        


Q ss_pred             CCccchhcccchhhhhhhcccCchhHHhhh--hcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcc
Q 013220          347 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVD--KYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW  414 (447)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~  414 (447)
                                 .           +...+..  ....+...+..+.+++.+||+.||++|||++|++++..
T Consensus       264 -----------~-----------~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~  311 (321)
T 2qkw_B          264 -----------Q-----------LEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLE  311 (321)
T ss_dssp             -----------C-----------CCSSSSSSCTTCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             -----------c-----------HHHhcChhhccccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHH
Confidence                       0           0000000  11245667889999999999999999999999998754

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=1.4e-38  Score=314.50  Aligned_cols=250  Identities=20%  Similarity=0.284  Sum_probs=198.8

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCe-----EEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSS-----YVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~-----~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      .++|++.+.||+|+||+||+|.+..++.     .||+|+++...  ...+.+.+|+++++.+.     .|+||+++++++
T Consensus        45 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~h~~iv~~~~~~  119 (333)
T 2i1m_A           45 RNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLG-----QHENIVNLLGAC  119 (333)
T ss_dssp             TTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHC-----CCTTBCCEEEEE
T ss_pred             HHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhc-----CCCCeeeEEEEE
Confidence            4789999999999999999999876654     79999887542  34567889999999995     689999999998


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhc------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCC
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSR------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPEN  174 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~------------~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~N  174 (447)
                      ...    ...++||||+ +++|.+++....            ...+++..+..++.|++.||+|||++ ||+||||||+|
T Consensus       120 ~~~----~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~Dlkp~N  194 (333)
T 2i1m_A          120 THG----GPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK-NCIHRDVAARN  194 (333)
T ss_dssp             CSS----SSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGG
T ss_pred             ecC----CceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC-CcccCCcccce
Confidence            753    5799999999 789999886532            23478999999999999999999997 99999999999


Q ss_pred             eEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccc
Q 013220          175 ILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMR  254 (447)
Q Consensus       175 ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (447)
                      |+++                                                                        ....
T Consensus       195 Il~~------------------------------------------------------------------------~~~~  202 (333)
T 2i1m_A          195 VLLT------------------------------------------------------------------------NGHV  202 (333)
T ss_dssp             CEEE------------------------------------------------------------------------GGGE
T ss_pred             EEEC------------------------------------------------------------------------CCCe
Confidence            9993                                                                        3567


Q ss_pred             eeEeecCccccccccc-----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHH
Q 013220          255 CKVVDFGNACRANKQF-----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHL  328 (447)
Q Consensus       255 ~kL~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~  328 (447)
                      ++|+|||++.......     ....+|+.|+|||.+.+..++.++|||||||++|+|++ |..||....      .....
T Consensus       203 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~------~~~~~  276 (333)
T 2i1m_A          203 AKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGIL------VNSKF  276 (333)
T ss_dssp             EEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC------SSHHH
T ss_pred             EEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccc------hhHHH
Confidence            9999999997543221     22345778999999999999999999999999999998 999997653      11111


Q ss_pred             HHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHH
Q 013220          329 ALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQ  408 (447)
Q Consensus       329 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~e  408 (447)
                      ..+....                                        .....+...+..+.+||.+||+.||.+|||++|
T Consensus       277 ~~~~~~~----------------------------------------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~  316 (333)
T 2i1m_A          277 YKLVKDG----------------------------------------YQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQ  316 (333)
T ss_dssp             HHHHHHT----------------------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHHHhcC----------------------------------------CCCCCCCCCCHHHHHHHHHHhccChhhCcCHHH
Confidence            1111100                                        001123344678999999999999999999999


Q ss_pred             HhcC
Q 013220          409 CLQH  412 (447)
Q Consensus       409 lL~h  412 (447)
                      ++++
T Consensus       317 l~~~  320 (333)
T 2i1m_A          317 ICSF  320 (333)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9873

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=1.6e-38  Score=314.61  Aligned_cols=249  Identities=22%  Similarity=0.365  Sum_probs=198.2

Q ss_pred             CCceEEEEeecccCceEEEEEEeC-------CCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDT-------RTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLID  105 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~-------~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~  105 (447)
                      .++|++.+.||+|+||+||+|++.       .++..||+|+++...  .....+.+|+++++.+.     .|+||+++++
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~hp~iv~~~~  108 (334)
T 2pvf_A           34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIG-----KHKNIINLLG  108 (334)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHC-----CCTTBCCEEE
T ss_pred             HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhh-----cCCCEeeEEE
Confidence            489999999999999999999875       356789999987542  34567889999999995     6899999999


Q ss_pred             cccccCCCcceEEEEEecc-cccHHHHHHhhcc--------------CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccC
Q 013220          106 HFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRY--------------KGLELNKVREICKYILTGLDYLHRELGIIHTDL  170 (447)
Q Consensus       106 ~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~--------------~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Di  170 (447)
                      ++...    ...++||||+ +++|.+++.....              ..+++..+..++.||+.||+|||++ ||+||||
T Consensus       109 ~~~~~----~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dl  183 (334)
T 2pvf_A          109 ACTQD----GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ-KCIHRDL  183 (334)
T ss_dssp             EECSS----SCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT-TEECSCC
T ss_pred             EEccC----CceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC-CeeCCCC
Confidence            98753    6799999999 7899998875431              2378899999999999999999997 9999999


Q ss_pred             CCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCC
Q 013220          171 KPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDG  250 (447)
Q Consensus       171 kp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (447)
                      ||+||++                                                                        +
T Consensus       184 kp~NIll------------------------------------------------------------------------~  191 (334)
T 2pvf_A          184 AARNVLV------------------------------------------------------------------------T  191 (334)
T ss_dssp             SGGGEEE------------------------------------------------------------------------C
T ss_pred             ccceEEE------------------------------------------------------------------------c
Confidence            9999999                                                                        3


Q ss_pred             cccceeEeecCcccccccc-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCc
Q 013220          251 IDMRCKVVDFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCED  324 (447)
Q Consensus       251 ~~~~~kL~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~  324 (447)
                      ....+||+|||++......     .....+|+.|+|||++.+..++.++|||||||++|+|++ |..||...+      .
T Consensus       192 ~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~------~  265 (334)
T 2pvf_A          192 ENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP------V  265 (334)
T ss_dssp             TTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC------H
T ss_pred             CCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCC------H
Confidence            4567999999999755432     222356788999999998889999999999999999999 999997542      1


Q ss_pred             hHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC
Q 013220          325 EDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP  404 (447)
Q Consensus       325 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp  404 (447)
                      ......+..  +                                       .....+...+..+.+||.+||+.||++||
T Consensus       266 ~~~~~~~~~--~---------------------------------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rp  304 (334)
T 2pvf_A          266 EELFKLLKE--G---------------------------------------HRMDKPANCTNELYMMMRDCWHAVPSQRP  304 (334)
T ss_dssp             HHHHHHHHH--T---------------------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSC
T ss_pred             HHHHHHHhc--C---------------------------------------CCCCCCccCCHHHHHHHHHHccCChhhCc
Confidence            111111110  0                                       01123344567899999999999999999


Q ss_pred             ChHHHhcC
Q 013220          405 TAQQCLQH  412 (447)
Q Consensus       405 ta~elL~h  412 (447)
                      |++|++++
T Consensus       305 s~~ell~~  312 (334)
T 2pvf_A          305 TFKQLVED  312 (334)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            99999976

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=5.4e-39  Score=322.08  Aligned_cols=212  Identities=18%  Similarity=0.278  Sum_probs=170.3

Q ss_pred             cCCceEEEEeecccCceEEEEE-----EeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           34 NGGRYIAQRKLGWGQFSIVWLA-----YDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        34 ~~~~y~l~~~lG~G~~g~Vy~a-----~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      ++++|.+.++||+|+||+||+|     .+..+++.||+|+++...  ...+..|+++++.+.+.   .|++|+++++++.
T Consensus        63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~e~~~~~~l~~~---~~~~iv~~~~~~~  137 (365)
T 3e7e_A           63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN--PWEFYIGTQLMERLKPS---MQHMFMKFYSAHL  137 (365)
T ss_dssp             SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC--HHHHHHHHHHHHHSCGG---GGGGBCCEEEEEE
T ss_pred             CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC--hhHHHHHHHHHHHhhhh---hhhhhhhhheeee
Confidence            3588999999999999999999     467789999999987643  45688899999988533   5899999999987


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhc---cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCC
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSR---YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~---~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~  184 (447)
                      ..    ...++||||| +++|.+++....   ...+++..+..++.||+.||+|||++ ||+||||||+|||+.......
T Consensus       138 ~~----~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~-~ivHrDiKp~NIll~~~~~~~  212 (365)
T 3e7e_A          138 FQ----NGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDC-EIIHGDIKPDNFILGNGFLEQ  212 (365)
T ss_dssp             CS----SCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTT-TEECCCCSGGGEEECGGGTCC
T ss_pred             cC----CCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhC-CeecCCCCHHHEEecccccCc
Confidence            53    6789999999 899999886432   24599999999999999999999996 999999999999995411000


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                   .........+||+|||++.
T Consensus       213 -------------------------------------------------------------~~~~~~~~~~kl~DFG~a~  231 (365)
T 3e7e_A          213 -------------------------------------------------------------DDEDDLSAGLALIDLGQSI  231 (365)
T ss_dssp             -------------------------------------------------------------------CTTEEECCCTTCE
T ss_pred             -------------------------------------------------------------cccccccCCEEEeeCchhh
Confidence                                                                         0001235789999999996


Q ss_pred             ccc-----cccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCC
Q 013220          265 RAN-----KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPK  316 (447)
Q Consensus       265 ~~~-----~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~  316 (447)
                      ...     ......+||+.|+|||++.+..++.++|||||||++|+|++|+.||...
T Consensus       232 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~  288 (365)
T 3e7e_A          232 DMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKN  288 (365)
T ss_dssp             EGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEE
T ss_pred             hhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccC
Confidence            432     2234567999999999999999999999999999999999999999644

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=1e-38  Score=329.65  Aligned_cols=252  Identities=25%  Similarity=0.399  Sum_probs=200.0

Q ss_pred             ccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           33 FNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        33 ~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      +..++|++.++||+|+||.||+|.+.. +..||||+++......+.+.+|+++++.+      .|+||+++++++..   
T Consensus       181 i~~~~~~~~~~lG~G~fg~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~E~~~l~~l------~hp~iv~~~~~~~~---  250 (452)
T 1fmk_A          181 IPRESLRLEVKLGQGCFGEVWMGTWNG-TTRVAIKTLKPGTMSPEAFLQEAQVMKKL------RHEKLVQLYAVVSE---  250 (452)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETT-TEEEEEEECCTTSSCHHHHHHHHHHHHHC------CCTTBCCEEEEECS---
T ss_pred             cChhHceeeeeecCCCCeEEEEEEECC-CceEEEEEeccCCCCHHHHHHHHHHHHhC------CCCCEeeEEEEEcC---
Confidence            334789999999999999999999865 46799999887655567899999999999      78999999998754   


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                        ...++||||+ +++|.+++.......+++..+..++.|++.||+|||++ ||+||||||+|||+              
T Consensus       251 --~~~~iv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~-~ivHrDlkp~Nill--------------  313 (452)
T 1fmk_A          251 --EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM-NYVHRDLRAANILV--------------  313 (452)
T ss_dssp             --SSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEE--------------
T ss_pred             --CceEEEehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CeeCCCCChhhEEE--------------
Confidence              4689999999 88999998654445689999999999999999999997 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                +....+||+|||++......  
T Consensus       314 ----------------------------------------------------------~~~~~~kl~DfG~a~~~~~~~~  335 (452)
T 1fmk_A          314 ----------------------------------------------------------GENLVCKVADFGLARLIEDNEY  335 (452)
T ss_dssp             ----------------------------------------------------------CGGGCEEECCCCTTC-------
T ss_pred             ----------------------------------------------------------CCCCCEEECCCccceecCCCce
Confidence                                                                      34567999999999755422  


Q ss_pred             --cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCC
Q 013220          270 --FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  346 (447)
Q Consensus       270 --~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  346 (447)
                        .....++..|+|||.+.+..++.++|||||||++|+|++ |..||.+.+      .......+..  +          
T Consensus       336 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~------~~~~~~~i~~--~----------  397 (452)
T 1fmk_A          336 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV------NREVLDQVER--G----------  397 (452)
T ss_dssp             -------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC------HHHHHHHHHT--T----------
T ss_pred             ecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHc--C----------
Confidence              122345788999999999999999999999999999999 999997642      1111111110  0          


Q ss_pred             CCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC--cccc
Q 013220          347 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH--PWLS  416 (447)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h--p~f~  416 (447)
                                                   .+...+...++.+.+||.+||+.||++|||++++++.  .++.
T Consensus       398 -----------------------------~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~  440 (452)
T 1fmk_A          398 -----------------------------YRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFT  440 (452)
T ss_dssp             -----------------------------CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTS
T ss_pred             -----------------------------CCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhc
Confidence                                         0112344567789999999999999999999999863  4554

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=1.9e-38  Score=310.66  Aligned_cols=254  Identities=23%  Similarity=0.294  Sum_probs=191.8

Q ss_pred             ccCCceEEEEeecccCceEEEEEEeCC---CCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccc
Q 013220           33 FNGGRYIAQRKLGWGQFSIVWLAYDTR---TSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDH  106 (447)
Q Consensus        33 ~~~~~y~l~~~lG~G~~g~Vy~a~~~~---~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~  106 (447)
                      +..++|.+.+.||+|+||+||+|++..   ++..||+|+++..   ....+.+.+|+++++.+      .|+||++++++
T Consensus        31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~  104 (313)
T 3brb_A           31 IDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDF------SHPNVIRLLGV  104 (313)
T ss_dssp             CCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTC------CCTTBCCCCEE
T ss_pred             cCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcC------CCCCeeeeeEE
Confidence            345899999999999999999997654   5668999987643   23356788999999999      79999999999


Q ss_pred             ccccCCC-cceEEEEEecc-cccHHHHHHhh----ccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeec
Q 013220          107 FKHAGPN-GQHLCMVLEFL-GDSLLRLIKYS----RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVST  180 (447)
Q Consensus       107 ~~~~~~~-~~~~~lvmE~~-~~~L~~~~~~~----~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~  180 (447)
                      +...... ....++||||+ +++|.+++...    ....+++..+..++.|++.||+|||++ ||+||||||+||++   
T Consensus       105 ~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~dikp~NIli---  180 (313)
T 3brb_A          105 CIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNR-NFLHRDLAARNCML---  180 (313)
T ss_dssp             EEC-------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTT-TCCCCCCSGGGEEE---
T ss_pred             EeeccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCcceEEE---
Confidence            8765322 13579999999 78999888532    224589999999999999999999997 99999999999999   


Q ss_pred             CCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeec
Q 013220          181 IDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDF  260 (447)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Df  260 (447)
                                                                                           +..+.++|+||
T Consensus       181 ---------------------------------------------------------------------~~~~~~kl~Df  191 (313)
T 3brb_A          181 ---------------------------------------------------------------------RDDMTVCVADF  191 (313)
T ss_dssp             ---------------------------------------------------------------------CTTSCEEECSC
T ss_pred             ---------------------------------------------------------------------cCCCcEEEeec
Confidence                                                                                 34567999999


Q ss_pred             Ccccccccc-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHH
Q 013220          261 GNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMEL  334 (447)
Q Consensus       261 g~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~  334 (447)
                      |++......     .....+++.|+|||.+.+..++.++|||||||++|+|++ |..||...+      .......+.. 
T Consensus       192 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~------~~~~~~~~~~-  264 (313)
T 3brb_A          192 GLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQ------NHEMYDYLLH-  264 (313)
T ss_dssp             SCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC------GGGHHHHHHT-
T ss_pred             CcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCC------HHHHHHHHHc-
Confidence            999754322     122356789999999999999999999999999999999 889997653      1111111110 


Q ss_pred             hCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          335 IGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       335 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                       +                                       .....+...+..+.+||.+||+.||++|||+.+++++
T Consensus       265 -~---------------------------------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~  302 (313)
T 3brb_A          265 -G---------------------------------------HRLKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQ  302 (313)
T ss_dssp             -T---------------------------------------CCCCCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             -C---------------------------------------CCCCCCccccHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence             0                                       0112334456789999999999999999999999875

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=1e-38  Score=315.06  Aligned_cols=249  Identities=22%  Similarity=0.295  Sum_probs=196.5

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEE--EEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYV--ALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~v--aiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      .++|++.+.||+|+||.||+|++..++..+  |+|.++..  ....+.+.+|+++++.+.     .|+||+++++++...
T Consensus        24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~-----~hp~iv~~~~~~~~~   98 (327)
T 1fvr_A           24 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLG-----HHPNIINLLGACEHR   98 (327)
T ss_dssp             GGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCC-----CCTTBCCEEEEEEET
T ss_pred             HHHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhcc-----CCCchhhhceeeeeC
Confidence            378999999999999999999998888765  89977642  233457888999998884     789999999998753


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhc--------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCe
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSR--------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENI  175 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~--------------~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Ni  175 (447)
                          ...++||||+ +++|.+++....              ...+++..+..++.||+.||+|||++ ||+||||||+||
T Consensus        99 ----~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~dlkp~NI  173 (327)
T 1fvr_A           99 ----GYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK-QFIHRDLAARNI  173 (327)
T ss_dssp             ----TEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGE
T ss_pred             ----CceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC-CccCCCCccceE
Confidence                6899999999 889999886532              23589999999999999999999996 999999999999


Q ss_pred             EeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccce
Q 013220          176 LLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRC  255 (447)
Q Consensus       176 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (447)
                      ++                                                                        +....+
T Consensus       174 l~------------------------------------------------------------------------~~~~~~  181 (327)
T 1fvr_A          174 LV------------------------------------------------------------------------GENYVA  181 (327)
T ss_dssp             EE------------------------------------------------------------------------CGGGCE
T ss_pred             EE------------------------------------------------------------------------cCCCeE
Confidence            99                                                                        345679


Q ss_pred             eEeecCcccccccc--cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHH
Q 013220          256 KVVDFGNACRANKQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMM  332 (447)
Q Consensus       256 kL~Dfg~a~~~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~  332 (447)
                      +|+|||++......  .....+++.|+|||.+.+..++.++|||||||++|+|++ |..||...+      ...    +.
T Consensus       182 kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~------~~~----~~  251 (327)
T 1fvr_A          182 KIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT------CAE----LY  251 (327)
T ss_dssp             EECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC------HHH----HH
T ss_pred             EEcccCcCccccccccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCc------HHH----HH
Confidence            99999998644322  223356889999999998889999999999999999998 999996542      111    11


Q ss_pred             HHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          333 ELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       333 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                      +.+..                                     ......+...+..+.+||.+||+.||++|||++|++++
T Consensus       252 ~~~~~-------------------------------------~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  294 (327)
T 1fvr_A          252 EKLPQ-------------------------------------GYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVS  294 (327)
T ss_dssp             HHGGG-------------------------------------TCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHhhc-------------------------------------CCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            11000                                     00112334456789999999999999999999999986

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=2.5e-38  Score=306.86  Aligned_cols=244  Identities=22%  Similarity=0.350  Sum_probs=194.4

Q ss_pred             CCceEEEE-eecccCceEEEEEE--eCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           35 GGRYIAQR-KLGWGQFSIVWLAY--DTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        35 ~~~y~l~~-~lG~G~~g~Vy~a~--~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      .++|++.+ .||+|+||+||+|.  +..+++.||+|+++...   ...+.+.+|+++++.+      .|+||+++++++.
T Consensus        15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~i~~~~~~~~   88 (291)
T 1xbb_A           15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQL------DNPYIVRMIGICE   88 (291)
T ss_dssp             GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTC------CCTTBCCEEEEEE
T ss_pred             chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhC------CCCCEEEEEEEEC
Confidence            57899999 99999999999994  45668999999887543   2356788999999999      7899999999883


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCc
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                      .     ...++||||+ +++|.+++...  ..+++..+..++.|++.||+|||++ ||+||||||+||++..        
T Consensus        89 ~-----~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~-~i~H~dikp~Nil~~~--------  152 (291)
T 1xbb_A           89 A-----ESWMLVMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLEES-NFVHRDLAARNVLLVT--------  152 (291)
T ss_dssp             S-----SSEEEEEECCTTEEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEEE--------
T ss_pred             C-----CCcEEEEEeCCCCCHHHHHHhC--cCCCHHHHHHHHHHHHHHHHHHHhC-CeEcCCCCcceEEEeC--------
Confidence            2     4689999999 78999988754  3489999999999999999999997 9999999999999943        


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                      +..++|+|||++....
T Consensus       153 ----------------------------------------------------------------~~~~kl~Dfg~~~~~~  168 (291)
T 1xbb_A          153 ----------------------------------------------------------------QHYAKISDFGLSKALR  168 (291)
T ss_dssp             ----------------------------------------------------------------TTEEEECCCTTCEECC
T ss_pred             ----------------------------------------------------------------CCcEEEccCCcceeec
Confidence                                                                            5679999999997553


Q ss_pred             ccc------ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCH
Q 013220          268 KQF------AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  340 (447)
Q Consensus       268 ~~~------~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~  340 (447)
                      ...      ....++..|+|||.+.+..++.++|||||||++|+|++ |..||...+      .......+..  +    
T Consensus       169 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~------~~~~~~~~~~--~----  236 (291)
T 1xbb_A          169 ADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK------GSEVTAMLEK--G----  236 (291)
T ss_dssp             TTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCC------HHHHHHHHHT--T----
T ss_pred             cCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCC------HHHHHHHHHc--C----
Confidence            221      12245688999999998889999999999999999999 999997642      1111111100  0    


Q ss_pred             HhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          341 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                         .....+...+..+.++|.+||+.||++|||+.++++
T Consensus       237 -----------------------------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~  272 (291)
T 1xbb_A          237 -----------------------------------ERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVEL  272 (291)
T ss_dssp             -----------------------------------CCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             -----------------------------------CCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                                               011234455778999999999999999999999985

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=4.4e-39  Score=316.75  Aligned_cols=271  Identities=25%  Similarity=0.332  Sum_probs=200.1

Q ss_pred             CccccccCc--cccCCceEEEEeecccCceEEEEEE----eCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCC
Q 013220           23 GYHAVRVGD--LFNGGRYIAQRKLGWGQFSIVWLAY----DTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDP   94 (447)
Q Consensus        23 ~~~~~~~g~--~~~~~~y~l~~~lG~G~~g~Vy~a~----~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~   94 (447)
                      ++....+|+  ++++..|++.++||+|+||+||+|.    +..+++.||+|+++...  ...+.+.+|+++++.+     
T Consensus        16 ~~~~~~pg~~~~~~~r~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-----   90 (318)
T 3lxp_A           16 EVLFQGPGDPTVFHKRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTL-----   90 (318)
T ss_dssp             --------CCCBCCGGGEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHC-----
T ss_pred             eeeecCCCCCceecHHHHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhC-----
Confidence            334445555  3554445999999999999998874    44578999999987643  3456789999999999     


Q ss_pred             CCcceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCC
Q 013220           95 SNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPE  173 (447)
Q Consensus        95 ~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~  173 (447)
                       .|+||+++++++...  +...+++||||+ +++|.+++..   ..+++..+..++.|++.||+|||+. ||+||||||+
T Consensus        91 -~h~~iv~~~~~~~~~--~~~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~i~~~l~~~l~~LH~~-~ivH~Dikp~  163 (318)
T 3lxp_A           91 -YHEHIIKYKGCCEDA--GAASLQLVMEYVPLGSLRDYLPR---HSIGLAQLLLFAQQICEGMAYLHAQ-HYIHRDLAAR  163 (318)
T ss_dssp             -CCTTBCCEEEEEEET--TTTEEEEEECCCTTCBHHHHGGG---SCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGG
T ss_pred             -CCcchhhEEEEEecC--CCceEEEEEecccCCcHHHHHhh---CCCCHHHHHHHHHHHHHHHHHHHhC-CccCCCCchh
Confidence             789999999998864  346899999999 7899988854   3489999999999999999999996 9999999999


Q ss_pred             CeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCccc
Q 013220          174 NILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDM  253 (447)
Q Consensus       174 Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (447)
                      ||++                                                                        +...
T Consensus       164 Nil~------------------------------------------------------------------------~~~~  171 (318)
T 3lxp_A          164 NVLL------------------------------------------------------------------------DNDR  171 (318)
T ss_dssp             GEEE------------------------------------------------------------------------CTTC
T ss_pred             eEEE------------------------------------------------------------------------cCCC
Confidence            9999                                                                        3456


Q ss_pred             ceeEeecCcccccccc------cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHH
Q 013220          254 RCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDH  327 (447)
Q Consensus       254 ~~kL~Dfg~a~~~~~~------~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~  327 (447)
                      .++|+|||.+......      .....+|..|+|||.+.+..++.++|||||||++|+|++|..||....          
T Consensus       172 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~----------  241 (318)
T 3lxp_A          172 LVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPP----------  241 (318)
T ss_dssp             CEEECCGGGCEECCTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHH----------
T ss_pred             CEEECCccccccccccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccc----------
Confidence            7999999999765432      223357888999999999889999999999999999999999996431          


Q ss_pred             HHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhh--hcCCChhhHHHHHHHHhhccccCCCCCCC
Q 013220          328 LALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVD--KYRFSETDAREFAEFLVPLLDFTPEKRPT  405 (447)
Q Consensus       328 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~ll~~~L~~dP~kRpt  405 (447)
                       .......+.......                       .......+..  ....+...+..+.+||.+||+.||++|||
T Consensus       242 -~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps  297 (318)
T 3lxp_A          242 -TKFLELIGIAQGQMT-----------------------VLRLTELLERGERLPRPDKCPAEVYHLMKNCWETEASFRPT  297 (318)
T ss_dssp             -HHHHHHHCSCCHHHH-----------------------HHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCC
T ss_pred             -hhhhhhhcccccchh-----------------------HHHHHHHHhcccCCCCCccccHHHHHHHHHHcCCCcccCcC
Confidence             001111111110000                       0000111111  12344566789999999999999999999


Q ss_pred             hHHHhc
Q 013220          406 AQQCLQ  411 (447)
Q Consensus       406 a~elL~  411 (447)
                      ++|+++
T Consensus       298 ~~ell~  303 (318)
T 3lxp_A          298 FENLIP  303 (318)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999984

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=1.4e-38  Score=314.66  Aligned_cols=279  Identities=20%  Similarity=0.239  Sum_probs=192.5

Q ss_pred             cCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC-C
Q 013220           34 NGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG-P  112 (447)
Q Consensus        34 ~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~-~  112 (447)
                      ..++|++.+.||+|+||+||+|++  +++.||+|++.....  ..+..|.+++...    ...|+||+++++.+.... .
T Consensus        11 ~~~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~--~~~~~e~~~~~~~----~~~h~~i~~~~~~~~~~~~~   82 (336)
T 3g2f_A           11 DLDNLKLLELIGRGRYGAVYKGSL--DERPVAVKVFSFANR--QNFINEKNIYRVP----LMEHDNIARFIVGDERVTAD   82 (336)
T ss_dssp             CTTSEEEEEEEEECSSEEEEEEEE--TTEEEEEEEEEGGGH--HHHHHHHHHHTST----TCCCTTBCCEEEEEEEECTT
T ss_pred             ChHHhheeeecccCCCeEEEEEEE--CCeEEEEEEeeccch--hhHHHHHHHHHHH----hccCcchhhheecccccccC
Confidence            347999999999999999999976  689999999875543  3344454444321    128999999998654422 2


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhC---------CcccccCCCCCeEeeecCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHREL---------GIIHTDLKPENILLVSTID  182 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~---------gIiH~Dikp~Nill~~~~~  182 (447)
                      +....++||||| +++|.+++...   ..++..+..++.||+.||+|||+ .         ||+||||||+||++     
T Consensus        83 ~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~qi~~~L~~LH~-~~~~~~~~~~~ivH~Dikp~Nill-----  153 (336)
T 3g2f_A           83 GRMEYLLVMEYYPNGSLXKYLSLH---TSDWVSSCRLAHSVTRGLAYLHT-ELPRGDHYKPAISHRDLNSRNVLV-----  153 (336)
T ss_dssp             SCEEEEEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHC-CBCCGGGCBCCEECSSCSGGGEEE-----
T ss_pred             CCceEEEEEecCCCCcHHHHHhhc---ccchhHHHHHHHHHHHHHHHHHh-hhccccccccceeecccccceEEE-----
Confidence            345789999999 88999988653   35888999999999999999998 6         99999999999999     


Q ss_pred             CCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCc
Q 013220          183 PSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGN  262 (447)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~  262 (447)
                                                                                         +..+.+||+|||+
T Consensus       154 -------------------------------------------------------------------~~~~~~kL~DFG~  166 (336)
T 3g2f_A          154 -------------------------------------------------------------------KNDGTCVISDFGL  166 (336)
T ss_dssp             -------------------------------------------------------------------CTTSCEEECCCTT
T ss_pred             -------------------------------------------------------------------cCCCcEEEeeccc
Confidence                                                                               3456799999999


Q ss_pred             ccccccc-----------cccCCCCCCccChHHhhc-------CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCc
Q 013220          263 ACRANKQ-----------FAEEIQTRQYRAPEVILR-------AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCED  324 (447)
Q Consensus       263 a~~~~~~-----------~~~~~gt~~y~aPE~l~~-------~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~  324 (447)
                      +......           ....+||+.|+|||++.+       ..++.++|||||||++|+|++|..||...........
T Consensus       167 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~  246 (336)
T 3g2f_A          167 SMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQM  246 (336)
T ss_dssp             CEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCC
T ss_pred             eeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHH
Confidence            9754321           223468999999999986       3456799999999999999999877765432211110


Q ss_pred             hHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC
Q 013220          325 EDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP  404 (447)
Q Consensus       325 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp  404 (447)
                      ..     ....+..+..            ........     .......+..........++.+.+||.+||+.||++||
T Consensus       247 ~~-----~~~~~~~~~~------------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rp  304 (336)
T 3g2f_A          247 AF-----QTEVGNHPTF------------EDMQVLVS-----REKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARL  304 (336)
T ss_dssp             TT-----HHHHCSSCCH------------HHHHHHHT-----TSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSC
T ss_pred             hh-----hcccCCCchH------------HHHHhhhc-----ccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCc
Confidence            00     0001111100            00000000     00000000001112234677899999999999999999


Q ss_pred             ChHHH------hcCcccccc
Q 013220          405 TAQQC------LQHPWLSLR  418 (447)
Q Consensus       405 ta~el------L~hp~f~~~  418 (447)
                      |++|+      +.++|-+..
T Consensus       305 s~~e~l~~L~~ll~~~~~~~  324 (336)
T 3g2f_A          305 TAQXAEERMAELMMIWERNK  324 (336)
T ss_dssp             CHHHHHHHHHHHHHCCCC--
T ss_pred             chHHHHHHHHHHHHHHHhcc
Confidence            99999      456777754

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=9.5e-39  Score=321.97  Aligned_cols=250  Identities=19%  Similarity=0.315  Sum_probs=189.9

Q ss_pred             ccccCCceEEEEeecccCceEEEEEEeC---CCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecc
Q 013220           31 DLFNGGRYIAQRKLGWGQFSIVWLAYDT---RTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLID  105 (447)
Q Consensus        31 ~~~~~~~y~l~~~lG~G~~g~Vy~a~~~---~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~  105 (447)
                      .-+..++|.+.+.||+|+||+||+|++.   .++..||||+++..  ....+.+.+|+++++.+      .|+||+++++
T Consensus        40 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~~~~  113 (373)
T 2qol_A           40 KELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQF------DHPNIIRLEG  113 (373)
T ss_dssp             CBCCGGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTC------CCTTBCCEEE
T ss_pred             hhcCHhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhC------CCCCCCeEEE
Confidence            3344578999999999999999999876   46778999988753  34456789999999998      7999999999


Q ss_pred             cccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCC
Q 013220          106 HFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       106 ~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~  184 (447)
                      ++...    ...++||||+ +++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+||++       
T Consensus       114 ~~~~~----~~~~lv~e~~~~~sL~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dlkp~NIll-------  180 (373)
T 2qol_A          114 VVTKS----KPVMIVTEYMENGSLDSFLRKHD-AQFTVIQLVGMLRGIASGMKYLSDM-GYVHRDLAARNILI-------  180 (373)
T ss_dssp             EECSS----SSCEEEEECCTTCBHHHHHHTTT-TCSCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEE-------
T ss_pred             EEeeC----CceEEEEeCCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHHC-CeeCCCCCcceEEE-------
Confidence            98753    6799999999 889999886432 4589999999999999999999996 99999999999999       


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                       +.++.+||+|||++.
T Consensus       181 -----------------------------------------------------------------~~~~~~kl~Dfg~a~  195 (373)
T 2qol_A          181 -----------------------------------------------------------------NSNLVCKVSDFGLGR  195 (373)
T ss_dssp             -----------------------------------------------------------------CTTCCEEECCC----
T ss_pred             -----------------------------------------------------------------cCCCCEEECcCcccc
Confidence                                                                             446779999999997


Q ss_pred             ccccccc------cCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCC
Q 013220          265 RANKQFA------EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGK  337 (447)
Q Consensus       265 ~~~~~~~------~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~  337 (447)
                      .......      ...++..|+|||.+.+..++.++|||||||++|+|++ |..||...+      .......+..   .
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~------~~~~~~~i~~---~  266 (373)
T 2qol_A          196 VLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMS------NQDVIKAVDE---G  266 (373)
T ss_dssp             ------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCC------HHHHHHHHHT---T
T ss_pred             ccccCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHc---C
Confidence            5543211      1134678999999999999999999999999999997 999996542      1111111100   0


Q ss_pred             CCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          338 MPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                            .....+...+..+.+||.+||+.||++|||+.++++
T Consensus       267 --------------------------------------~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~  302 (373)
T 2qol_A          267 --------------------------------------YRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVS  302 (373)
T ss_dssp             --------------------------------------EECCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             --------------------------------------CCCCCCccccHHHHHHHHHHhCcChhhCcCHHHHHH
Confidence                                                  011123345678999999999999999999999875

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=2.7e-39  Score=330.32  Aligned_cols=259  Identities=14%  Similarity=0.125  Sum_probs=191.5

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh----HHhHHHHHHHHHHHHHhhcCC----------CCCcceee
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA----AQFAQAALHEIEVLSAVADGD----------PSNEKCVI  101 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~----~~~~~~~~~E~~~l~~l~~~~----------~~~~~~Iv  101 (447)
                      ..|++.+.||+|+||+||+|++..+++.||||++...    ....+.+.+|+.+++.+.+..          ......++
T Consensus        78 ~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  157 (413)
T 3dzo_A           78 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLV  157 (413)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEE
T ss_pred             eeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhc
Confidence            3588999999999999999999999999999988732    223467889999998886421          00001111


Q ss_pred             eec------cccccc-CCCcceEEEEEecccccHHHHHHhh-----ccCCCCHHHHHHHHHHHHHHHHHHHhhCCccccc
Q 013220          102 RLI------DHFKHA-GPNGQHLCMVLEFLGDSLLRLIKYS-----RYKGLELNKVREICKYILTGLDYLHRELGIIHTD  169 (447)
Q Consensus       102 ~~~------~~~~~~-~~~~~~~~lvmE~~~~~L~~~~~~~-----~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~D  169 (447)
                      .+.      ..+... .......+++|+.++++|.+++...     ....+++..+..++.||+.||+|||++ ||+|||
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~iiHrD  236 (413)
T 3dzo_A          158 KDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY-GLVHTY  236 (413)
T ss_dssp             ECCC---------------CCSEEEEEECCSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT-TEECSC
T ss_pred             ccCCCCccccccCCCccccccceEEEeehhcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhC-CcccCC
Confidence            111      111110 0012357899998899999888522     123366778889999999999999996 999999


Q ss_pred             CCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCC
Q 013220          170 LKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLD  249 (447)
Q Consensus       170 ikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (447)
                      |||+|||+                                                                        
T Consensus       237 iKp~NILl------------------------------------------------------------------------  244 (413)
T 3dzo_A          237 LRPVDIVL------------------------------------------------------------------------  244 (413)
T ss_dssp             CCGGGEEE------------------------------------------------------------------------
T ss_pred             cccceEEE------------------------------------------------------------------------
Confidence            99999999                                                                        


Q ss_pred             CcccceeEeecCcccccccccccCCCCCCccChHHh----------hcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCC
Q 013220          250 GIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVI----------LRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQ  319 (447)
Q Consensus       250 ~~~~~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~l----------~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~  319 (447)
                      +.++.+||+|||++..........+| +.|+|||++          .+..++.++|||||||++|+|++|+.||...+..
T Consensus       245 ~~~~~~kL~DFG~a~~~~~~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~~~  323 (413)
T 3dzo_A          245 DQRGGVFLTGFEHLVRDGASAVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAAL  323 (413)
T ss_dssp             CTTCCEEECCGGGCEETTEEECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCCCTTGGG
T ss_pred             ecCCeEEEEeccceeecCCccccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCCCCCCcchh
Confidence            44567999999999877666666788 999999999          4445788999999999999999999999765311


Q ss_pred             CCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccC
Q 013220          320 GFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFT  399 (447)
Q Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~d  399 (447)
                      ..                                                ...++..    ...+++.+.+||.+||+.|
T Consensus       324 ~~------------------------------------------------~~~~~~~----~~~~~~~~~~li~~~l~~d  351 (413)
T 3dzo_A          324 GG------------------------------------------------SEWIFRS----CKNIPQPVRALLEGFLRYP  351 (413)
T ss_dssp             SC------------------------------------------------SGGGGSS----CCCCCHHHHHHHHHHTCSS
T ss_pred             hh------------------------------------------------HHHHHhh----cccCCHHHHHHHHHHccCC
Confidence            10                                                0001111    1123568999999999999


Q ss_pred             CCCCCChHHHhcCcccccccC
Q 013220          400 PEKRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       400 P~kRpta~elL~hp~f~~~~~  420 (447)
                      |++|||+.|+|+||||+....
T Consensus       352 P~~Rpt~~~~l~~~~~~~~~~  372 (413)
T 3dzo_A          352 KEDRLLPLQAMETPEYEQLRT  372 (413)
T ss_dssp             GGGSCCHHHHTTSHHHHHHHH
T ss_pred             hhhCcCHHHHHhCHHHHHHHH
Confidence            999999999999999987643

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6.6e-38  Score=310.59  Aligned_cols=249  Identities=18%  Similarity=0.301  Sum_probs=193.2

Q ss_pred             ccCCceEEEEeecccCceEEEEEEeCCC----CeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccc
Q 013220           33 FNGGRYIAQRKLGWGQFSIVWLAYDTRT----SSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDH  106 (447)
Q Consensus        33 ~~~~~y~l~~~lG~G~~g~Vy~a~~~~~----~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~  106 (447)
                      +..++|++.+.||+|+||+||+|++..+    +..||+|+++..  ......+.+|+++++.+      .|+||++++++
T Consensus        41 i~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~  114 (333)
T 1mqb_A           41 IHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQF------SHHNIIRLEGV  114 (333)
T ss_dssp             CCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTC------CCTTBCCEEEE
T ss_pred             CChHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhC------CCCCCCcEEEE
Confidence            3457899999999999999999987654    346999988753  23345788999999999      78999999999


Q ss_pred             ccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCC
Q 013220          107 FKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK  185 (447)
Q Consensus       107 ~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~  185 (447)
                      +..    ....++||||+ +++|.+++... ...+++..+..++.|++.||+|||++ ||+||||||+||++        
T Consensus       115 ~~~----~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dikp~NIl~--------  180 (333)
T 1mqb_A          115 ISK----YKPMMIITEYMENGALDKFLREK-DGEFSVLQLVGMLRGIAAGMKYLANM-NYVHRDLAARNILV--------  180 (333)
T ss_dssp             ECS----SSSEEEEEECCTTEEHHHHHHHT-TTCSCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEE--------
T ss_pred             Eec----CCCcEEEEeCCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhC-CeeCCCCChheEEE--------
Confidence            874    36899999999 77999888653 24589999999999999999999997 99999999999999        


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccc
Q 013220          186 DPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR  265 (447)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~  265 (447)
                                                                                      +.+..++|+|||.+..
T Consensus       181 ----------------------------------------------------------------~~~~~~kl~Dfg~~~~  196 (333)
T 1mqb_A          181 ----------------------------------------------------------------NSNLVCKVSDFGLSRV  196 (333)
T ss_dssp             ----------------------------------------------------------------CTTCCEEECCCCC---
T ss_pred             ----------------------------------------------------------------CCCCcEEECCCCcchh
Confidence                                                                            3456799999999976


Q ss_pred             ccccc------ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCC
Q 013220          266 ANKQF------AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKM  338 (447)
Q Consensus       266 ~~~~~------~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~  338 (447)
                      .....      ....+|..|+|||.+.+..++.++|||||||++|+|++ |..||...+      ....+..+..   . 
T Consensus       197 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~------~~~~~~~~~~---~-  266 (333)
T 1mqb_A          197 LEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELS------NHEVMKAIND---G-  266 (333)
T ss_dssp             --------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC------HHHHHHHHHT---T-
T ss_pred             hccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCC------HHHHHHHHHC---C-
Confidence            54321      12245778999999998899999999999999999998 999996542      1111111110   0 


Q ss_pred             CHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          339 PRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                           .....+...+..+.+||.+||+.||++|||+.+++++
T Consensus       267 -------------------------------------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~  303 (333)
T 1mqb_A          267 -------------------------------------FRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSI  303 (333)
T ss_dssp             -------------------------------------CCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHH
T ss_pred             -------------------------------------CcCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                                                 0111233456789999999999999999999999875

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6.6e-38  Score=304.07  Aligned_cols=247  Identities=20%  Similarity=0.257  Sum_probs=192.4

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCC---eEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTS---SYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~---~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      +|.+.++||+|+||+||+|++..++   ..||+|++...  ....+.+.+|+++++.+      +|+||+++++++... 
T Consensus        22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~~-   94 (298)
T 3pls_A           22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGL------NHPNVLALIGIMLPP-   94 (298)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTC------CCTTBCCCCEEECCS-
T ss_pred             EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhC------CCCCeeeEEEEEecC-
Confidence            4778899999999999999865443   47999987643  23456788999999999      799999999998753 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                        ....++||||+ +++|.+++... ...+++..+..++.|++.||+|||++ ||+||||||+||++             
T Consensus        95 --~~~~~~v~e~~~~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~-~i~H~dikp~Nili-------------  157 (298)
T 3pls_A           95 --EGLPHVLLPYMCHGDLLQFIRSP-QRNPTVKDLISFGLQVARGMEYLAEQ-KFVHRDLAARNCML-------------  157 (298)
T ss_dssp             --SSCCEEEECCCTTCBHHHHHHCT-TCCCBHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEE-------------
T ss_pred             --CCCcEEEEecccCCCHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCcceEEE-------------
Confidence              23458999999 88999988653 34588999999999999999999997 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc--
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--  268 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~--  268 (447)
                                                                                 +..+.++|+|||.+.....  
T Consensus       158 -----------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~  178 (298)
T 3pls_A          158 -----------------------------------------------------------DESFTVKVADFGLARDILDRE  178 (298)
T ss_dssp             -----------------------------------------------------------CTTCCEEECCTTSSCTTTTGG
T ss_pred             -----------------------------------------------------------cCCCcEEeCcCCCcccccCCc
Confidence                                                                       3456799999999964432  


Q ss_pred             -----ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhh
Q 013220          269 -----QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  343 (447)
Q Consensus       269 -----~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  343 (447)
                           ......+|+.|+|||.+.+..++.++|||||||++|+|++|..||....     ........+...         
T Consensus       179 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~-----~~~~~~~~~~~~---------  244 (298)
T 3pls_A          179 YYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHI-----DPFDLTHFLAQG---------  244 (298)
T ss_dssp             GGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS-----CGGGHHHHHHTT---------
T ss_pred             ccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccC-----CHHHHHHHhhcC---------
Confidence                 1223457889999999999899999999999999999999666654331     111111111100         


Q ss_pred             hCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          344 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                      .....+...++.+.+||.+||+.||.+|||++++++.
T Consensus       245 --------------------------------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~  281 (298)
T 3pls_A          245 --------------------------------RRLPQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVGE  281 (298)
T ss_dssp             --------------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             --------------------------------CCCCCCccchHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                                            0111334456789999999999999999999999863

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=8.3e-39  Score=309.36  Aligned_cols=258  Identities=22%  Similarity=0.285  Sum_probs=191.2

Q ss_pred             Ccccc-ccCccccCCceEEEEeecccCceEEEEEEeCC-CC--eEEEEEEechh----HHhHHHHHHHHHHHHHhhcCCC
Q 013220           23 GYHAV-RVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTR-TS--SYVALKIQKSA----AQFAQAALHEIEVLSAVADGDP   94 (447)
Q Consensus        23 ~~~~~-~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~-~~--~~vaiK~~~~~----~~~~~~~~~E~~~l~~l~~~~~   94 (447)
                      +..|. .+-..++.++|++.+.||+|+||+||+|++.. ++  ..||+|+++..    ....+.+.+|+++++.+     
T Consensus         4 g~~~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l-----   78 (291)
T 1u46_A            4 GEGPLQSLTCLIGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSL-----   78 (291)
T ss_dssp             -------CCEECCGGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHC-----
T ss_pred             CCccccccccccchhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhC-----
Confidence            34444 33345667899999999999999999998643 33  36899987643    23456788999999999     


Q ss_pred             CCcceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCC
Q 013220           95 SNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPE  173 (447)
Q Consensus        95 ~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~  173 (447)
                       .|+||+++++++...     ..++||||+ +++|.+.+.... ..+++..+..++.|++.||+|||++ ||+|+||||+
T Consensus        79 -~h~~i~~~~~~~~~~-----~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dikp~  150 (291)
T 1u46_A           79 -DHRNLIRLYGVVLTP-----PMKMVTELAPLGSLLDRLRKHQ-GHFLLGTLSRYAVQVAEGMGYLESK-RFIHRDLAAR  150 (291)
T ss_dssp             -CCTTBCCEEEEECSS-----SCEEEEECCTTCBHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGG
T ss_pred             -CCCCcccEEEEEccC-----CceeeEecccCCCHHHHHHhcc-CCcCHHHHHHHHHHHHHHHHHHHhC-CcccCCCchh
Confidence             789999999998753     388999999 789998886543 3589999999999999999999997 9999999999


Q ss_pred             CeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCccc
Q 013220          174 NILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDM  253 (447)
Q Consensus       174 Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (447)
                      ||++..                                                                        ..
T Consensus       151 Nili~~------------------------------------------------------------------------~~  158 (291)
T 1u46_A          151 NLLLAT------------------------------------------------------------------------RD  158 (291)
T ss_dssp             GEEEEE------------------------------------------------------------------------TT
T ss_pred             eEEEcC------------------------------------------------------------------------CC
Confidence            999943                                                                        56


Q ss_pred             ceeEeecCccccccccc------ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchH
Q 013220          254 RCKVVDFGNACRANKQF------AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDED  326 (447)
Q Consensus       254 ~~kL~Dfg~a~~~~~~~------~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~  326 (447)
                      .++|+|||++.......      ....+|..|+|||.+.+..++.++|||||||++|+|++ |..||...+      ...
T Consensus       159 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~------~~~  232 (291)
T 1u46_A          159 LVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLN------GSQ  232 (291)
T ss_dssp             EEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCC------HHH
T ss_pred             CEEEccccccccccccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCC------HHH
Confidence            79999999997654321      22356778999999998888999999999999999999 999997552      111


Q ss_pred             HHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCCh
Q 013220          327 HLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA  406 (447)
Q Consensus       327 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta  406 (447)
                      .+..+..   ..                                     .....+...+..+.++|.+||+.||++|||+
T Consensus       233 ~~~~~~~---~~-------------------------------------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~  272 (291)
T 1u46_A          233 ILHKIDK---EG-------------------------------------ERLPRPEDCPQDIYNVMVQCWAHKPEDRPTF  272 (291)
T ss_dssp             HHHHHHT---SC-------------------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             HHHHHHc---cC-------------------------------------CCCCCCcCcCHHHHHHHHHHccCCcccCcCH
Confidence            1111110   00                                     0011233456789999999999999999999


Q ss_pred             HHHhc
Q 013220          407 QQCLQ  411 (447)
Q Consensus       407 ~elL~  411 (447)
                      .++++
T Consensus       273 ~~l~~  277 (291)
T 1u46_A          273 VALRD  277 (291)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99997

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=2.6e-38  Score=329.04  Aligned_cols=256  Identities=18%  Similarity=0.285  Sum_probs=196.1

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      +++|++.++||+|+||.||+|++..+++.||||++..... ...+..|+++++.+.+     +.+|..+..++.    .+
T Consensus         6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~-~~~~~~E~~il~~L~~-----~~~i~~i~~~~~----~~   75 (483)
T 3sv0_A            6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK-HPQLLYESKIYRILQG-----GTGIPNVRWFGV----EG   75 (483)
T ss_dssp             TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS-SCCHHHHHHHHHHTTT-----STTCCCEEEEEE----ET
T ss_pred             CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc-cHHHHHHHHHHHHhcC-----CCCCCeEEEEEe----eC
Confidence            4799999999999999999999999999999998775543 3468889999999963     334444433333    34


Q ss_pred             ceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          115 QHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       115 ~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      ...++||||++++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+|||+...              
T Consensus        76 ~~~~lvme~~g~sL~~ll~~~~-~~l~~~~~~~i~~qi~~aL~yLH~~-gIvHrDIKP~NILl~~~--------------  139 (483)
T 3sv0_A           76 DYNVLVMDLLGPSLEDLFNFCS-RKLSLKTVLMLADQMINRVEFVHSK-SFLHRDIKPDNFLMGLG--------------  139 (483)
T ss_dssp             TEEEEEEECCCCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEECCG--------------
T ss_pred             CEEEEEEECCCCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHHC-CEeecccCcceEEEecC--------------
Confidence            6899999999999999987533 4599999999999999999999997 99999999999999421              


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc----
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF----  270 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~----  270 (447)
                                                                             +....+||+|||++.......    
T Consensus       140 -------------------------------------------------------~~~~~vkL~DFGla~~~~~~~~~~~  164 (483)
T 3sv0_A          140 -------------------------------------------------------RRANQVYIIDFGLAKKYRDTSTHQH  164 (483)
T ss_dssp             -------------------------------------------------------GGTTCEEECCCTTCEECBCTTTCCB
T ss_pred             -------------------------------------------------------CCCCeEEEEeCCcceeccCCccccc
Confidence                                                                   235679999999997654322    


Q ss_pred             ------ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhh
Q 013220          271 ------AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  344 (447)
Q Consensus       271 ------~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (447)
                            ...+||..|+|||++.+..++.++|||||||++|+|++|..||......   .....+..+....-..      
T Consensus       165 ~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~---~~~~~~~~i~~~~~~~------  235 (483)
T 3sv0_A          165 IPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAG---TKKQKYEKISEKKVAT------  235 (483)
T ss_dssp             CCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCS---SHHHHHHHHHHHHHHS------
T ss_pred             cccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccch---hHHHHHHHHhhccccc------
Confidence                  1457899999999999999999999999999999999999999765321   1111111111100000      


Q ss_pred             CCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          345 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                              ....       +....+.++.+||.+||+.||++||+++++++
T Consensus       236 ------------------------~~~~-------l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~  271 (483)
T 3sv0_A          236 ------------------------SIEA-------LCRGYPTEFASYFHYCRSLRFDDKPDYSYLKR  271 (483)
T ss_dssp             ------------------------CHHH-------HHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHH
T ss_pred             ------------------------cHHH-------HhcCCcHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence                                    0000       11233568999999999999999999988763

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=4.1e-39  Score=317.26  Aligned_cols=266  Identities=21%  Similarity=0.244  Sum_probs=200.8

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH--hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ--FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~--~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      .++|++.+.||+|+||+||+|++ .++..||+|++.....  ....+.+|+++++.+      .|+||+++++++...  
T Consensus        29 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~~--   99 (326)
T 3uim_A           29 SDNFSNKNILGRGGFGKVYKGRL-ADGTLVAVKRLKEERTQGGELQFQTEVEMISMA------VHRNLLRLRGFCMTP--   99 (326)
T ss_dssp             TTSSCSTTEEECCSSSEEEEECC-SSSCCEEEEECCC-----CCCHHHHHHHGGGTC------CCTTBCCCCEEECCS--
T ss_pred             hhccccceeEecCCCcEEEEEEe-cCCCEEEEEEeccccCchHHHHHHHHHHHHHhc------cCCCccceEEEEecC--
Confidence            47999999999999999999975 4688999998775432  223678899998888      799999999998753  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHhhC---CcccccCCCCCeEeeecCCCCCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRY--KGLELNKVREICKYILTGLDYLHREL---GIIHTDLKPENILLVSTIDPSKD  186 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~--~~l~~~~~~~i~~qil~aL~~lH~~~---gIiH~Dikp~Nill~~~~~~~~~  186 (447)
                        ...++||||+ +++|.+++.....  ..+++..+..++.|++.||+|||+ .   ||+||||||+||++         
T Consensus       100 --~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~-~~~~~ivH~Dlkp~Nil~---------  167 (326)
T 3uim_A          100 --TERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHD-HCDPKIIHRDVKAANILL---------  167 (326)
T ss_dssp             --SCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHH-SSSSCEECCCCSGGGEEE---------
T ss_pred             --CceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHh-CCCCCeEeCCCchhhEEE---------
Confidence              5789999999 8899998865432  248899999999999999999999 6   99999999999999         


Q ss_pred             cccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccc
Q 013220          187 PIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA  266 (447)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~  266 (447)
                                                                                     +....++|+|||.+...
T Consensus       168 ---------------------------------------------------------------~~~~~~kl~Dfg~~~~~  184 (326)
T 3uim_A          168 ---------------------------------------------------------------DEEFEAVVGDFGLAKLM  184 (326)
T ss_dssp             ---------------------------------------------------------------CTTCCEEECCCSSCEEC
T ss_pred             ---------------------------------------------------------------CCCCCEEeccCcccccc
Confidence                                                                           34567999999999754


Q ss_pred             ccc----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh
Q 013220          267 NKQ----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  342 (447)
Q Consensus       267 ~~~----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (447)
                      ...    .....||+.|+|||.+.+..++.++|||||||++|+|++|..||........ ........+.......    
T Consensus       185 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~~~~~~~~~~~~~~~~----  259 (326)
T 3uim_A          185 DYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLAND-DDVMLLDWVKGLLKEK----  259 (326)
T ss_dssp             CSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTT-SCSBHHHHHTTTTSSC----
T ss_pred             CcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccc-cchhHHHHHHHHhhch----
Confidence            322    2234589999999999988899999999999999999999999952210000 0000111100000000    


Q ss_pred             hhCCCCccchhcccchhhhhhhcccCchhHHh--hhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLL--VDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                                                ......  .....++...+..+.+|+.+||+.||.+|||++|+++|-.-
T Consensus       260 --------------------------~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~  308 (326)
T 3uim_A          260 --------------------------KLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEG  308 (326)
T ss_dssp             --------------------------CSTTSSCTTCTTSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHT
T ss_pred             --------------------------hhhhhcChhhccccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcC
Confidence                                      000000  00123456678899999999999999999999999988653

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=3.8e-38  Score=332.20  Aligned_cols=252  Identities=25%  Similarity=0.399  Sum_probs=203.5

Q ss_pred             ccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           33 FNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        33 ~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      +..++|++.++||+|+||.||+|.+.. +..||||+++......+.+.+|+++++.+      .|+||+++++++..   
T Consensus       264 i~~~~~~~~~~lG~G~fg~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~E~~~l~~l------~hpniv~~~~~~~~---  333 (535)
T 2h8h_A          264 IPRESLRLEVKLGQGCFGEVWMGTWNG-TTRVAIKTLKPGTMSPEAFLQEAQVMKKL------RHEKLVQLYAVVSE---  333 (535)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETT-TEEEEEEEECTTSSCHHHHHHHHHHHHHC------CCTTBCCEEEEECS---
T ss_pred             cchhhhhhheecccCCCeEEEEEEECC-CceEEEEEeCCCCCCHHHHHHHHHHHHhC------CCCCEeeEEEEEee---
Confidence            334789999999999999999999865 46799999887655567899999999999      78999999998754   


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                        ...++||||| +++|.+++.......+++..+..++.||+.||+|||++ ||+||||||+|||+              
T Consensus       334 --~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~-~ivHrDlkp~NIll--------------  396 (535)
T 2h8h_A          334 --EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM-NYVHRDLRAANILV--------------  396 (535)
T ss_dssp             --SSCEEEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEE--------------
T ss_pred             --ccceEeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CeeCCCCCHhhEEE--------------
Confidence              4689999999 88999998654445589999999999999999999997 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                +.+..+||+|||++......  
T Consensus       397 ----------------------------------------------------------~~~~~~kl~DFG~a~~~~~~~~  418 (535)
T 2h8h_A          397 ----------------------------------------------------------GENLVCKVADFGLARLIEDNEY  418 (535)
T ss_dssp             ----------------------------------------------------------CGGGCEEECCTTSTTTCCCHHH
T ss_pred             ----------------------------------------------------------cCCCcEEEcccccceecCCCce
Confidence                                                                      34567999999999755422  


Q ss_pred             --cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCC
Q 013220          270 --FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  346 (447)
Q Consensus       270 --~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  346 (447)
                        .....++..|+|||.+.+..++.++|||||||++|+|++ |..||.+..      ....+..+..  +          
T Consensus       419 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~------~~~~~~~i~~--~----------  480 (535)
T 2h8h_A          419 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV------NREVLDQVER--G----------  480 (535)
T ss_dssp             HTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCC------HHHHHHHHHT--T----------
T ss_pred             ecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHc--C----------
Confidence              222346788999999999999999999999999999999 999997542      1111111110  0          


Q ss_pred             CCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC--cccc
Q 013220          347 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH--PWLS  416 (447)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h--p~f~  416 (447)
                                                   .+...+..+++.+.+||.+||+.||++|||++++++.  .+|.
T Consensus       481 -----------------------------~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~  523 (535)
T 2h8h_A          481 -----------------------------YRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFT  523 (535)
T ss_dssp             -----------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSC
T ss_pred             -----------------------------CCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhh
Confidence                                         0112334557789999999999999999999999864  4544

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=8.7e-38  Score=303.69  Aligned_cols=247  Identities=18%  Similarity=0.233  Sum_probs=191.5

Q ss_pred             CceEEEEeecccCceEEEEEEeCCC---CeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRT---SSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~---~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      .+|++.+.||+|+||+||+|++..+   ...+|+|.+...  ....+.+.+|+++++.+      .|+||+++++++...
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l------~h~~iv~~~~~~~~~   98 (298)
T 3f66_A           25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDF------SHPNVLSLLGICLRS   98 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTC------CCTTBCCCCEEECCS
T ss_pred             eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhC------CCCCEeeeeeEEEcC
Confidence            5799999999999999999986543   346899987643  23456788999999999      789999999986542


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                         ....++||||+ +++|.+++... ...+++..+..++.|++.||+|||++ ||+||||||+||++            
T Consensus        99 ---~~~~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~ql~~~l~~lH~~-~i~H~dikp~Nil~------------  161 (298)
T 3f66_A           99 ---EGSPLVVLPYMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMKYLASK-KFVHRDLAARNCML------------  161 (298)
T ss_dssp             ---SSCCEEEEECCTTCBHHHHHHCT-TCCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEE------------
T ss_pred             ---CCceEEEEeCCCCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHhC-CccCCCCchheEEE------------
Confidence               35788999999 77999988643 24588999999999999999999996 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                  +..+.++|+|||.+......
T Consensus       162 ------------------------------------------------------------~~~~~~kl~Dfg~a~~~~~~  181 (298)
T 3f66_A          162 ------------------------------------------------------------DEKFTVKVADFGLARDMYDK  181 (298)
T ss_dssp             ------------------------------------------------------------CTTCCEEECSCGGGCCCSCG
T ss_pred             ------------------------------------------------------------CCCCCEEECccccccccccc
Confidence                                                                        44567999999999754322


Q ss_pred             -------cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          270 -------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       270 -------~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                             .....+|+.|+|||.+.+..++.++|||||||++|+|++ |..||.....      ......+.+  +     
T Consensus       182 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~------~~~~~~~~~--~-----  248 (298)
T 3f66_A          182 EYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNT------FDITVYLLQ--G-----  248 (298)
T ss_dssp             GGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCT------TTHHHHHHT--T-----
T ss_pred             chhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCH------HHHHHHHhc--C-----
Confidence                   223356788999999999999999999999999999999 5556654321      111111110  0     


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                        .....+...+..+.++|.+||+.||++|||++|+++.
T Consensus       249 ----------------------------------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~  285 (298)
T 3f66_A          249 ----------------------------------RRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSR  285 (298)
T ss_dssp             ----------------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ----------------------------------CCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                                              0011233446789999999999999999999999863

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=6.3e-38  Score=309.36  Aligned_cols=276  Identities=22%  Similarity=0.305  Sum_probs=199.2

Q ss_pred             CCCccccccCcccc--------CCceEEEEeecccCceEEEEEE----eCCCCeEEEEEEechh-HHhHHHHHHHHHHHH
Q 013220           21 KGGYHAVRVGDLFN--------GGRYIAQRKLGWGQFSIVWLAY----DTRTSSYVALKIQKSA-AQFAQAALHEIEVLS   87 (447)
Q Consensus        21 ~~~~~~~~~g~~~~--------~~~y~l~~~lG~G~~g~Vy~a~----~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~   87 (447)
                      ...|++..++..+.        .++|++.+.||+|+||.||+|+    +..+++.||+|++... ....+.+.+|+++++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~   97 (326)
T 2w1i_A           18 ENLYFQGAMGSAFEDRDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILK   97 (326)
T ss_dssp             -------------------CCCGGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhcccCccccCHHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHH
Confidence            33555555554432        3679999999999999999998    4668999999987653 334567889999999


Q ss_pred             HhhcCCCCCcceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcc
Q 013220           88 AVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGII  166 (447)
Q Consensus        88 ~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIi  166 (447)
                      .+      .|+||+++++++...  +....++||||+ +++|.+++.... ..+++..+..++.|++.||+|||++ ||+
T Consensus        98 ~l------~h~~iv~~~~~~~~~--~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~-~iv  167 (326)
T 2w1i_A           98 SL------QHDNIVKYKGVCYSA--GRRNLKLIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTK-RYI  167 (326)
T ss_dssp             TC------CCTTBCCEEEEECC------CCEEEECCCTTCBHHHHHHHST-TSSCHHHHHHHHHHHHHHHHHHHHT-TEE
T ss_pred             hC------CCCCeeeEEEEEEec--CCCceEEEEECCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhC-CEe
Confidence            99      789999999988754  335789999999 789999886543 3589999999999999999999996 999


Q ss_pred             cccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCc
Q 013220          167 HTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPER  246 (447)
Q Consensus       167 H~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (447)
                      ||||||+||++..                                                                   
T Consensus       168 H~dikp~NIli~~-------------------------------------------------------------------  180 (326)
T 2w1i_A          168 HRDLATRNILVEN-------------------------------------------------------------------  180 (326)
T ss_dssp             CSCCCGGGEEEEE-------------------------------------------------------------------
T ss_pred             ccCCCcceEEEcC-------------------------------------------------------------------
Confidence            9999999999943                                                                   


Q ss_pred             cCCCcccceeEeecCccccccccc------ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCC
Q 013220          247 CLDGIDMRCKVVDFGNACRANKQF------AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQG  320 (447)
Q Consensus       247 ~~~~~~~~~kL~Dfg~a~~~~~~~------~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~  320 (447)
                           ...++|+|||++.......      ....++..|+|||.+.+..++.++|||||||++|+|++|..||....   
T Consensus       181 -----~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~---  252 (326)
T 2w1i_A          181 -----ENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP---  252 (326)
T ss_dssp             -----TTEEEECCCTTCEECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHH---
T ss_pred             -----CCcEEEecCcchhhccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCH---
Confidence                 5679999999997654321      22356778999999998889999999999999999999999885321   


Q ss_pred             CCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhh--hcCCChhhHHHHHHHHhhcccc
Q 013220          321 FCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVD--KYRFSETDAREFAEFLVPLLDF  398 (447)
Q Consensus       321 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~ll~~~L~~  398 (447)
                              ....+..+..+..-                ..      ...+...+..  ....+...+.++.+||.+||+.
T Consensus       253 --------~~~~~~~~~~~~~~----------------~~------~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~  302 (326)
T 2w1i_A          253 --------AEFMRMIGNDKQGQ----------------MI------VFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNN  302 (326)
T ss_dssp             --------HHHHHHHCTTCCTH----------------HH------HHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCS
T ss_pred             --------HHHHHhhccccchh----------------hh------HHHHHHHhhcCCCCCCCCcccHHHHHHHHHHcCC
Confidence                    11111111111000                00      0000111111  1224456678999999999999


Q ss_pred             CCCCCCChHHHhc
Q 013220          399 TPEKRPTAQQCLQ  411 (447)
Q Consensus       399 dP~kRpta~elL~  411 (447)
                      ||++|||+.|+++
T Consensus       303 dP~~Rps~~el~~  315 (326)
T 2w1i_A          303 NVNQRPSFRDLAL  315 (326)
T ss_dssp             SGGGSCCHHHHHH
T ss_pred             ChhhCcCHHHHHH
Confidence            9999999999985

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=100.00  E-value=2.4e-38  Score=342.90  Aligned_cols=267  Identities=24%  Similarity=0.354  Sum_probs=212.3

Q ss_pred             CCccccCCCCCCCcc---ccccCccccCCceEEEEeecccCceEEEEEEeCC-CCeEEEEEEechh--HHhHHHHHHHHH
Q 013220           11 DDDEGIDSYRKGGYH---AVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTR-TSSYVALKIQKSA--AQFAQAALHEIE   84 (447)
Q Consensus        11 ~~~~~~~~~~~~~~~---~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~-~~~~vaiK~~~~~--~~~~~~~~~E~~   84 (447)
                      ...+.++.+|+..+.   ++..|+++. ++|++.+.||+|+||+||+|++.. +++.||||++...  ......+.+|++
T Consensus        53 ~~~~~~c~~c~~~~~~~~~~~~g~~~~-~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~  131 (681)
T 2pzi_A           53 GASEGWCPYCGSPYSFLPQLNPGDIVA-GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQ  131 (681)
T ss_dssp             CCSEEECTTTCCEEECSCSSCTTCEET-TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHG
T ss_pred             cccCCcCCCCCCccccCCCCCCCCEeC-CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHH
Confidence            345678888887543   567899997 799999999999999999999876 7899999987532  344557888999


Q ss_pred             HHHHhhcCCCCCcceeeeecccccccCCCcc-eEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhh
Q 013220           85 VLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ-HLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRE  162 (447)
Q Consensus        85 ~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~-~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~  162 (447)
                      +++.+      .|+||+++++++......+. ..|+||||+ +++|.+.+..    .+++..+..++.||+.||+|||++
T Consensus       132 ~l~~l------~hp~iv~~~~~~~~~~~~~~~~~~lv~E~~~g~~L~~~~~~----~l~~~~~~~~~~qi~~aL~~lH~~  201 (681)
T 2pzi_A          132 FLAEV------VHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQ----KLPVAEAIAYLLEILPALSYLHSI  201 (681)
T ss_dssp             GGGGC------CCTTBCCEEEEEEEECTTSCEEEEEEEECCCCEECC----C----CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhc------CCCCcCeEeeeEeecCCCCCceeEEEEEeCCCCcHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHC
Confidence            99988      79999999999887643222 379999999 7888776542    589999999999999999999997


Q ss_pred             CCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCC
Q 013220          163 LGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELP  242 (447)
Q Consensus       163 ~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (447)
                       ||+||||||+||++..                                                               
T Consensus       202 -giiHrDlkp~NIll~~---------------------------------------------------------------  217 (681)
T 2pzi_A          202 -GLVYNDLKPENIMLTE---------------------------------------------------------------  217 (681)
T ss_dssp             -TEECCCCSGGGEEECS---------------------------------------------------------------
T ss_pred             -CCeecccChHHeEEeC---------------------------------------------------------------
Confidence             9999999999999932                                                               


Q ss_pred             CCCccCCCcccceeEeecCcccccccccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCC
Q 013220          243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFC  322 (447)
Q Consensus       243 ~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~  322 (447)
                                ..+||+|||++...... ...+||+.|+|||++.+.. +.++|||||||++|+|++|..||........ 
T Consensus       218 ----------~~~kl~DFG~a~~~~~~-~~~~gt~~y~aPE~~~~~~-~~~sDi~slG~~l~~l~~g~~~~~~~~~~~~-  284 (681)
T 2pzi_A          218 ----------EQLKLIDLGAVSRINSF-GYLYGTPGFQAPEIVRTGP-TVATDIYTVGRTLAALTLDLPTRNGRYVDGL-  284 (681)
T ss_dssp             ----------SCEEECCCTTCEETTCC-SCCCCCTTTSCTTHHHHCS-CHHHHHHHHHHHHHHHHSCCCEETTEECSSC-
T ss_pred             ----------CcEEEEecccchhcccC-CccCCCccccCHHHHcCCC-CCceehhhhHHHHHHHHhCCCCCcccccccc-
Confidence                      26899999999766544 4567999999999997754 8899999999999999999888864321100 


Q ss_pred             CchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCC
Q 013220          323 EDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEK  402 (447)
Q Consensus       323 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~k  402 (447)
                                      +.                             ..        .....+..+.+||.+||+.||++
T Consensus       285 ----------------~~-----------------------------~~--------~~~~~~~~l~~li~~~l~~dP~~  311 (681)
T 2pzi_A          285 ----------------PE-----------------------------DD--------PVLKTYDSYGRLLRRAIDPDPRQ  311 (681)
T ss_dssp             ----------------CT-----------------------------TC--------HHHHHCHHHHHHHHHHTCSSGGG
T ss_pred             ----------------cc-----------------------------cc--------cccccCHHHHHHHhhhccCChhh
Confidence                            00                             00        00112457889999999999999


Q ss_pred             CCChHHHhcCcccccc
Q 013220          403 RPTAQQCLQHPWLSLR  418 (447)
Q Consensus       403 Rpta~elL~hp~f~~~  418 (447)
                      ||++.+.+.|+|+...
T Consensus       312 R~~~~~~l~~~l~~~~  327 (681)
T 2pzi_A          312 RFTTAEEMSAQLTGVL  327 (681)
T ss_dssp             SCSSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999998653

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=100.00  E-value=2.2e-39  Score=321.14  Aligned_cols=285  Identities=16%  Similarity=0.163  Sum_probs=195.4

Q ss_pred             ccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---------HhHHHHHHHHHHHHHhh------
Q 013220           26 AVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---------QFAQAALHEIEVLSAVA------   90 (447)
Q Consensus        26 ~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---------~~~~~~~~E~~~l~~l~------   90 (447)
                      |+..++.+..++|++.++||+|+||+||+|++  +++.||||++....         ...+.+.+|+++++.+.      
T Consensus        10 ~~~~~~~~~~~~y~~~~~lG~G~~g~V~~~~~--~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~   87 (336)
T 2vuw_A           10 PVPFSHCLPTEKLQRCEKIGEGVFGEVFQTIA--DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEV   87 (336)
T ss_dssp             CBCHHHHSCHHHHHTCEEEEEETTEEEEEEEE--TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCS
T ss_pred             CcchhhhcccccchheeeecccCceEEEEEEe--CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccc
Confidence            44555556568999999999999999999988  67999999887542         12367889999999986      


Q ss_pred             ---cCCCC-----------CcceeeeecccccccCC---------CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHH
Q 013220           91 ---DGDPS-----------NEKCVIRLIDHFKHAGP---------NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVR  146 (447)
Q Consensus        91 ---~~~~~-----------~~~~Iv~~~~~~~~~~~---------~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~  146 (447)
                         |++..           .|+||++++++|.....         ....+|+||||| ++++.+.+..   ..+++..++
T Consensus        88 ~~~h~niv~l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~---~~~~~~~~~  164 (336)
T 2vuw_A           88 CNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT---KLSSLATAK  164 (336)
T ss_dssp             SSBCCCBCCEEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT---TCCCHHHHH
T ss_pred             cccCCchhhhcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh---cCCCHHHHH
Confidence               22211           16777777777764211         246899999999 7765555432   458999999


Q ss_pred             HHHHHHHHHHHHHH-hhCCcccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhh
Q 013220          147 EICKYILTGLDYLH-RELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRA  225 (447)
Q Consensus       147 ~i~~qil~aL~~lH-~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (447)
                      .++.||+.||+||| ++ ||+||||||+|||+............                                    
T Consensus       165 ~i~~qi~~aL~~lH~~~-~ivHrDlKp~NILl~~~~~~~~~~~~------------------------------------  207 (336)
T 2vuw_A          165 SILHQLTASLAVAEASL-RFEHRDLHWGNVLLKKTSLKKLHYTL------------------------------------  207 (336)
T ss_dssp             HHHHHHHHHHHHHHHHH-CCBCSCCCGGGEEEEECSCSEEEEEE------------------------------------
T ss_pred             HHHHHHHHHHHHHHHhC-CEeECCCCHHHEEEeccCCcceeeec------------------------------------
Confidence            99999999999999 87 99999999999999653110000000                                    


Q ss_pred             hhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccccccCCCCCCccChHHhhcCCCCccchhHhHHHH-HH
Q 013220          226 VANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT-AF  304 (447)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvi-l~  304 (447)
                                      .............+||+|||+|......  ..+||+.|+|||++.+.. +.++|||||+++ .+
T Consensus       208 ----------------~~~~~~~~~~~~~vkL~DFG~a~~~~~~--~~~gt~~y~aPE~~~g~~-~~~~Diwsl~~~~~~  268 (336)
T 2vuw_A          208 ----------------NGKSSTIPSCGLQVSIIDYTLSRLERDG--IVVFCDVSMDEDLFTGDG-DYQFDIYRLMKKENN  268 (336)
T ss_dssp             ----------------TTEEEEEECTTEEEEECCCTTCBEEETT--EEECCCCTTCSGGGCCCS-SHHHHHHHHHHHHHT
T ss_pred             ----------------cCccccccCCCceEEEeeccccEecCCC--cEEEeecccChhhhcCCC-ccceehhhhhCCCCc
Confidence                            0000000012347999999999765543  347999999999998766 889999998777 67


Q ss_pred             HHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhh
Q 013220          305 ELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETD  384 (447)
Q Consensus       305 ~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (447)
                      .++.|..||....     ........+.........                            .       .......+
T Consensus       269 ~~~~g~~p~~~~~-----~~~~~~~~~~~~~~~~~~----------------------------~-------~~~~~~~~  308 (336)
T 2vuw_A          269 NRWGEYHPYSNVL-----WLHYLTDKMLKQMTFKTK----------------------------C-------NTPAMKQI  308 (336)
T ss_dssp             TCTTSCCTHHHHH-----HHHHHHHHHHHTCCCSSC----------------------------C-------CSHHHHHH
T ss_pred             ccccccCCCcchh-----hhhHHHHhhhhhhccCcc----------------------------c-------chhhhhhc
Confidence            7888998884210     000011111100000000                            0       00012356


Q ss_pred             HHHHHHHHhhccccCCCCCCChHHHh-cCcccc
Q 013220          385 AREFAEFLVPLLDFTPEKRPTAQQCL-QHPWLS  416 (447)
Q Consensus       385 ~~~l~~ll~~~L~~dP~kRpta~elL-~hp~f~  416 (447)
                      ++++.+||.+||++|     ||+|+| +||||+
T Consensus       309 s~~~~dli~~~L~~d-----sa~e~l~~Hp~f~  336 (336)
T 2vuw_A          309 KRKIQEFHRTMLNFS-----SATDLLCQHSLFK  336 (336)
T ss_dssp             HHHHHHHHHHGGGSS-----SHHHHHHHCGGGC
T ss_pred             CHHHHHHHHHHhccC-----CHHHHHhcCCCcC
Confidence            889999999999987     999999 999995

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=9.9e-38  Score=304.60  Aligned_cols=257  Identities=23%  Similarity=0.322  Sum_probs=196.7

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh-----HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA-----AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~-----~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      ..|...++||+|+||+||+|++  ++..||+|++...     ....+.+.+|+++++.+      .|+||+++++++...
T Consensus        31 ~~~~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~~i~~~~~~~~~~  102 (307)
T 2nru_A           31 PISVGGNKMGEGGFGVVYKGYV--NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKC------QHENLVELLGFSSDG  102 (307)
T ss_dssp             BTTTTCCEEEECSSEEEEEEES--SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHC------CCTTBCCEEEEECSS
T ss_pred             cccccCCccccCCCeEEEEEEE--CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhc------CCCCeEEEEEEEecC
Confidence            3455668999999999999976  5789999987542     23456788999999999      789999999998753


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSR-YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~-~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                          ...++||||+ +++|.+.+.... ...+++..+..++.|++.||+|||++ ||+||||||+||++           
T Consensus       103 ----~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~-~i~H~dlkp~Nili-----------  166 (307)
T 2nru_A          103 ----DDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHEN-HHIHRDIKSANILL-----------  166 (307)
T ss_dssp             ----SSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEE-----------
T ss_pred             ----CceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcC-CeecCCCCHHHEEE-----------
Confidence                6799999999 889998886432 34589999999999999999999996 99999999999999           


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                   +..+.++|+|||.+.....
T Consensus       167 -------------------------------------------------------------~~~~~~kl~Dfg~~~~~~~  185 (307)
T 2nru_A          167 -------------------------------------------------------------DEAFTAKISDFGLARASEK  185 (307)
T ss_dssp             -------------------------------------------------------------CTTCCEEECCCTTCEECCS
T ss_pred             -------------------------------------------------------------cCCCcEEEeeccccccccc
Confidence                                                                         3456799999999875443


Q ss_pred             c-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhh
Q 013220          269 Q-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  343 (447)
Q Consensus       269 ~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  343 (447)
                      .     .....||+.|+|||.+.+ .++.++|||||||++|+|++|..||.........      ..+.+.+.....   
T Consensus       186 ~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~------~~~~~~~~~~~~---  255 (307)
T 2nru_A          186 FAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQLL------LDIKEEIEDEEK---  255 (307)
T ss_dssp             CSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBT------THHHHHHHTTSC---
T ss_pred             ccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcchHHH------HHHHHHhhhhhh---
Confidence            2     223478999999999865 4789999999999999999999999865422111      111110000000   


Q ss_pred             hCCCCccchhcccchhhhhhhcccCchhHHhhh-hcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          344 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVD-KYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                               .+...+.. ....+...++.+.++|.+||+.||.+|||+++++++
T Consensus       256 -------------------------~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~  300 (307)
T 2nru_A          256 -------------------------TIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQL  300 (307)
T ss_dssp             -------------------------CHHHHSCSSCSCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHH
T ss_pred             -------------------------hhhhhccccccccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence                                     01111111 112455678899999999999999999999999864

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=7.6e-38  Score=315.43  Aligned_cols=247  Identities=18%  Similarity=0.238  Sum_probs=186.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCCC---CeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRT---SSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~---~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      .+|++.+.||+|+||+||+|++..+   +..||+|.++..  ....+.+.+|+++++.+      .|+||+++++++...
T Consensus        89 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l------~hpnIv~~~~~~~~~  162 (373)
T 3c1x_A           89 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDF------SHPNVLSLLGICLRS  162 (373)
T ss_dssp             EEEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTC------CCTTBCCCCEEECCC
T ss_pred             ceeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhC------CCCCcceEEEEEEcC
Confidence            4589999999999999999986533   356899987642  23456788899998888      799999999986542


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                         ....++||||+ +++|.+++.... ..+++..+..++.|++.||+|||++ ||+||||||+||++            
T Consensus       163 ---~~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~-~ivHrDlkp~NIll------------  225 (373)
T 3c1x_A          163 ---EGSPLVVLPYMKHGDLRNFIRNET-HNPTVKDLIGFGLQVAKGMKFLASK-KFVHRDLAARNCML------------  225 (373)
T ss_dssp             ---SSCCEEEEECCTTCBHHHHHHCTT-CCCBHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEE------------
T ss_pred             ---CCCeEEEEECCCCCCHHHHHhhcc-cCCCHHHHHHHHHHHHHHHHHHHHC-CEecCccchheEEE------------
Confidence               35788999999 789999886432 4578899999999999999999997 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                  +.++.+||+|||++......
T Consensus       226 ------------------------------------------------------------~~~~~~kL~DFG~a~~~~~~  245 (373)
T 3c1x_A          226 ------------------------------------------------------------DEKFTVKVADFGLARDMYDK  245 (373)
T ss_dssp             ------------------------------------------------------------CTTCCEEECCC---------
T ss_pred             ------------------------------------------------------------CCCCCEEEeecccccccccc
Confidence                                                                        44567999999999754321


Q ss_pred             -------cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          270 -------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       270 -------~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                             .....+|+.|+|||.+.+..++.++|||||||++|+|++ |..||...+..      .....+.+  +.    
T Consensus       246 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~------~~~~~~~~--~~----  313 (373)
T 3c1x_A          246 EFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF------DITVYLLQ--GR----  313 (373)
T ss_dssp             ------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSS------CHHHHHHT--TC----
T ss_pred             ccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHH------HHHHHHHc--CC----
Confidence                   122356788999999999999999999999999999999 67777654311      11111110  00    


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                         ....+...+..+.++|.+||+.||++|||++|++++
T Consensus       314 -----------------------------------~~~~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~  349 (373)
T 3c1x_A          314 -----------------------------------RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSR  349 (373)
T ss_dssp             -----------------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -----------------------------------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                                               111233456789999999999999999999999865

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=4.1e-37  Score=330.31  Aligned_cols=243  Identities=22%  Similarity=0.354  Sum_probs=192.3

Q ss_pred             CceEEEE-eecccCceEEEEEEe--CCCCeEEEEEEechhHH---hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           36 GRYIAQR-KLGWGQFSIVWLAYD--TRTSSYVALKIQKSAAQ---FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        36 ~~y~l~~-~lG~G~~g~Vy~a~~--~~~~~~vaiK~~~~~~~---~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      ..+.+.+ +||+|+||+||+|.+  ..+++.||||+++....   ..+.+.+|+++++.+      .|+||+++++++..
T Consensus       368 ~~~~l~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l------~hpnIv~l~~~~~~  441 (635)
T 4fl3_A          368 KLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQL------DNPYIVRMIGICEA  441 (635)
T ss_dssp             GGEEEEEEEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHC------CCTTBCCEEEEEES
T ss_pred             hhccccCCEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhC------CCCCEeeEEEEEec
Confidence            3455544 799999999999944  45678999999876432   346789999999999      78999999998853


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                           ...++||||| +++|.+++...  ..+++..+..++.||+.||+|||++ ||+||||||+|||++.         
T Consensus       442 -----~~~~lv~E~~~~g~L~~~l~~~--~~l~~~~~~~i~~qi~~~L~yLH~~-~iiHrDLkp~NILl~~---------  504 (635)
T 4fl3_A          442 -----ESWMLVMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLEES-NFVHRDLAARNVLLVT---------  504 (635)
T ss_dssp             -----SSEEEEEECCTTEEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEEE---------
T ss_pred             -----CCEEEEEEccCCCCHHHHHhhC--CCCCHHHHHHHHHHHHHHHHHHHHC-CEeCCCCChHhEEEeC---------
Confidence                 3588999999 88999988644  4589999999999999999999996 9999999999999943         


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                     ...+||+|||++.....
T Consensus       505 ---------------------------------------------------------------~~~~kL~DFGla~~~~~  521 (635)
T 4fl3_A          505 ---------------------------------------------------------------QHYAKISDFGLSKALRA  521 (635)
T ss_dssp             ---------------------------------------------------------------TTEEEECCTTHHHHTTC
T ss_pred             ---------------------------------------------------------------CCCEEEEEcCCcccccc
Confidence                                                                           56799999999975432


Q ss_pred             cc------ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          269 QF------AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       269 ~~------~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                      ..      ....+|..|+|||++.+..++.++|||||||++|+|++ |..||.+.+      .......+..  +     
T Consensus       522 ~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~------~~~~~~~i~~--~-----  588 (635)
T 4fl3_A          522 DENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK------GSEVTAMLEK--G-----  588 (635)
T ss_dssp             -------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC------HHHHHHHHHT--T-----
T ss_pred             CccccccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHc--C-----
Confidence            21      22245788999999999999999999999999999998 999997652      1111111110  0     


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                        .....+..++.++.+||.+||+.||++|||++++++
T Consensus       589 ----------------------------------~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~  624 (635)
T 4fl3_A          589 ----------------------------------ERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVEL  624 (635)
T ss_dssp             ----------------------------------CCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             ----------------------------------CCCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHH
Confidence                                              011234556778999999999999999999999974

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=3.9e-37  Score=329.39  Aligned_cols=252  Identities=21%  Similarity=0.360  Sum_probs=197.5

Q ss_pred             cCCceEEEE-eecccCceEEEEEEeC--CCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           34 NGGRYIAQR-KLGWGQFSIVWLAYDT--RTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        34 ~~~~y~l~~-~lG~G~~g~Vy~a~~~--~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      ..+++.+.+ +||+|+||.||+|.+.  .++..||||+++...  ...+.+.+|+++++.+      .|+||+++++++.
T Consensus       333 ~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l------~hpniv~l~~~~~  406 (613)
T 2ozo_A          333 KRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQL------DNPYIVRLIGVCQ  406 (613)
T ss_dssp             CTTSEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTC------CCTTBCCEEEEEE
T ss_pred             cccceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhC------CCCCEeeEEEEec
Confidence            345677777 8999999999999765  456789999987542  3456889999999998      7999999999986


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCc
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                      .     ..+++||||| +++|.+++... ...+++..+..++.||+.||+|||++ ||+||||||+|||+..        
T Consensus       407 ~-----~~~~lv~E~~~~g~L~~~l~~~-~~~l~~~~~~~i~~qi~~~L~~LH~~-~iiHrDlkp~NILl~~--------  471 (613)
T 2ozo_A          407 A-----EALMLVMEMAGGGPLHKFLVGK-REEIPVSNVAELLHQVSMGMKYLEEK-NFVHRNLAARNVLLVN--------  471 (613)
T ss_dssp             S-----SSEEEEEECCTTCBHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEEE--------
T ss_pred             c-----CCeEEEEEeCCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHHC-CEEcCcCCHHHEEEcC--------
Confidence            4     3589999999 88999888543 34589999999999999999999997 9999999999999943        


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                      ...+||+|||++....
T Consensus       472 ----------------------------------------------------------------~~~vkL~DFGla~~~~  487 (613)
T 2ozo_A          472 ----------------------------------------------------------------RHYAKISDFGLSKALG  487 (613)
T ss_dssp             ----------------------------------------------------------------TTEEEECCCSTTTTCC
T ss_pred             ----------------------------------------------------------------CCcEEEeeccCccccc
Confidence                                                                            5679999999997653


Q ss_pred             ccc------ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCH
Q 013220          268 KQF------AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  340 (447)
Q Consensus       268 ~~~------~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~  340 (447)
                      ...      ....+|..|+|||++.+..++.++|||||||++|+|++ |..||...+      ....+..+.+  |    
T Consensus       488 ~~~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~------~~~~~~~i~~--~----  555 (613)
T 2ozo_A          488 ADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK------GPEVMAFIEQ--G----  555 (613)
T ss_dssp             --------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC------SHHHHHHHHT--T----
T ss_pred             CCCceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCC------HHHHHHHHHc--C----
Confidence            221      11234678999999999999999999999999999998 999997653      2222111110  0    


Q ss_pred             HhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHH---hcCccccc
Q 013220          341 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQC---LQHPWLSL  417 (447)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~el---L~hp~f~~  417 (447)
                                                         .+...+..++..+.+||.+||+.||++|||++++   |++.|+..
T Consensus       556 -----------------------------------~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~  600 (613)
T 2ozo_A          556 -----------------------------------KRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSL  600 (613)
T ss_dssp             -----------------------------------CCCCCCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred             -----------------------------------CCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHh
Confidence                                               0112445567799999999999999999999998   45666654

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=2.8e-36  Score=325.01  Aligned_cols=246  Identities=19%  Similarity=0.288  Sum_probs=195.8

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCC---CeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRT---SSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~---~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      .++|++.+.||+|+||+||+|++..+   +..||+|..+..  ....+.+.+|+.+++.+      +|+||+++++++..
T Consensus       389 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l------~HpnIv~l~~~~~~  462 (656)
T 2j0j_A          389 RERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQF------DHPHIVKLIGVITE  462 (656)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHC------CCTTBCCEEEEECS
T ss_pred             cccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhC------CCCCCCeEEEEEec
Confidence            47899999999999999999987643   567999987643  23346788999999999      89999999998753


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                           ...++||||+ +++|.+++.... ..+++..+..++.|++.||+|||++ ||+||||||+||++..         
T Consensus       463 -----~~~~lv~E~~~~g~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~-givHrDikp~NILl~~---------  526 (656)
T 2j0j_A          463 -----NPVWIIMELCTLGELRSFLQVRK-FSLDLASLILYAYQLSTALAYLESK-RFVHRDIAARNVLVSS---------  526 (656)
T ss_dssp             -----SSCEEEEECCTTCBHHHHHHHTT-TTCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEEE---------
T ss_pred             -----CceEEEEEcCCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhC-CccccccchHhEEEeC---------
Confidence                 3589999999 789999886533 3588999999999999999999997 9999999999999943         


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                     ++.+||+|||++.....
T Consensus       527 ---------------------------------------------------------------~~~vkL~DFG~a~~~~~  543 (656)
T 2j0j_A          527 ---------------------------------------------------------------NDCVKLGDFGLSRYMED  543 (656)
T ss_dssp             ---------------------------------------------------------------TTEEEECCCCCCCSCCC
T ss_pred             ---------------------------------------------------------------CCCEEEEecCCCeecCC
Confidence                                                                           56799999999976543


Q ss_pred             cc----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhh
Q 013220          269 QF----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  343 (447)
Q Consensus       269 ~~----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  343 (447)
                      ..    ....+|+.|+|||.+.+..++.++|||||||++|+|++ |..||.+.+      ....+..+..          
T Consensus       544 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~------~~~~~~~i~~----------  607 (656)
T 2j0j_A          544 STYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVK------NNDVIGRIEN----------  607 (656)
T ss_dssp             ----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC------HHHHHHHHHH----------
T ss_pred             CcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCC------HHHHHHHHHc----------
Confidence            22    22346789999999999899999999999999999997 999997542      2221111111          


Q ss_pred             hCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          344 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                     ......+...+..+.+||.+||+.||++|||+.++++.
T Consensus       608 -------------------------------~~~~~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~  645 (656)
T 2j0j_A          608 -------------------------------GERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQ  645 (656)
T ss_dssp             -------------------------------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -------------------------------CCCCCCCccccHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence                                           01112345567789999999999999999999999853

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=100.00  E-value=3.4e-36  Score=292.35  Aligned_cols=234  Identities=15%  Similarity=0.087  Sum_probs=181.5

Q ss_pred             cccccCc-cccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh----HHhHHHHHHHHHHHHHhhcCCCCCcce
Q 013220           25 HAVRVGD-LFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA----AQFAQAALHEIEVLSAVADGDPSNEKC   99 (447)
Q Consensus        25 ~~~~~g~-~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~----~~~~~~~~~E~~~l~~l~~~~~~~~~~   99 (447)
                      .++..|+ ++ +++|++.+.||+|+||.||+|++..+++.||+|++...    ....+.+.+|++++..+      .|+|
T Consensus        20 ~~~~~g~~~~-~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l------~hp~   92 (286)
T 3uqc_A           20 VQLVPGARIA-NGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRI------DKPG   92 (286)
T ss_dssp             CCCCTTCEET-TTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTC------CCTT
T ss_pred             CcCCCCCEEe-cCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcC------CCCC
Confidence            3567899 55 48999999999999999999999999999999998754    23346788999999888      8999


Q ss_pred             eeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEee
Q 013220          100 VIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV  178 (447)
Q Consensus       100 Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~  178 (447)
                      |+++++++...    ...|+||||+ |++|.+++..    ......+..++.|++.||+|||++ ||+||||||+||+++
T Consensus        93 iv~~~~~~~~~----~~~~lv~e~~~g~~L~~~l~~----~~~~~~~~~i~~ql~~aL~~lH~~-givH~Dikp~NIll~  163 (286)
T 3uqc_A           93 VARVLDVVHTR----AGGLVVAEWIRGGSLQEVADT----SPSPVGAIRAMQSLAAAADAAHRA-GVALSIDHPSRVRVS  163 (286)
T ss_dssp             BCCEEEEEEET----TEEEEEEECCCEEEHHHHHTT----CCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSGGGEEEE
T ss_pred             cceeeEEEEEC----CcEEEEEEecCCCCHHHHHhc----CCChHHHHHHHHHHHHHHHHHHHC-CCccCCCCcccEEEc
Confidence            99999998754    6899999999 7899998843    245667889999999999999997 999999999999994


Q ss_pred             ecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEe
Q 013220          179 STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVV  258 (447)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~  258 (447)
                      .                                                                        ++.++|+
T Consensus       164 ~------------------------------------------------------------------------~g~~kl~  171 (286)
T 3uqc_A          164 I------------------------------------------------------------------------DGDVVLA  171 (286)
T ss_dssp             T------------------------------------------------------------------------TSCEEEC
T ss_pred             C------------------------------------------------------------------------CCCEEEE
Confidence            3                                                                        4567776


Q ss_pred             ecCcccccccccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCC
Q 013220          259 DFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKM  338 (447)
Q Consensus       259 Dfg~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~  338 (447)
                      +++                 |++       +++.++|||||||++|+|++|+.||...+.......              
T Consensus       172 ~~~-----------------~~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~--------------  213 (286)
T 3uqc_A          172 YPA-----------------TMP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAP--------------  213 (286)
T ss_dssp             SCC-----------------CCT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEE--------------
T ss_pred             ecc-----------------ccC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHH--------------
Confidence            443                 233       378899999999999999999999987642210000              


Q ss_pred             CHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          339 PRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                   .. ..      .........       .....+++.+.+||.+||+.||++| |+.|+++.
T Consensus       214 -------------~~-~~------~~~~~~~~~-------~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~  259 (286)
T 3uqc_A          214 -------------AE-RD------TAGQPIEPA-------DIDRDIPFQISAVAARSVQGDGGIR-SASTLLNL  259 (286)
T ss_dssp             -------------CC-BC------TTSCBCCHH-------HHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHH
T ss_pred             -------------HH-HH------hccCCCChh-------hcccCCCHHHHHHHHHHcccCCccC-CHHHHHHH
Confidence                         00 00      000000000       0123456789999999999999999 99999874

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=1.2e-36  Score=298.21  Aligned_cols=244  Identities=22%  Similarity=0.325  Sum_probs=187.3

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      .++|++.+.||+|+||+||+|++..   .||+|+++...   ...+.+.+|+++++.+      .|+||+++++++... 
T Consensus        32 ~~~~~~~~~lg~G~~g~V~~~~~~~---~~avk~~~~~~~~~~~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~~-  101 (319)
T 2y4i_B           32 FEQLEIGELIGKGRFGQVYHGRWHG---EVAIRLIDIERDNEDQLKAFKREVMAYRQT------RHENVVLFMGACMSP-  101 (319)
T ss_dssp             CSCEECCCBCCCSSSSEEEEEEESS---SEEEEECCCCSCCCCCCCCCCTTGGGGTTC------CCTTBCCCCEEEECS-
T ss_pred             HHHeEEeeEeccCCceEEEEEEEcC---eEEEEEeecCCCCHHHHHHHHHHHHHHhcC------CCCCEeEEEEEEecC-
Confidence            4789999999999999999998754   48999876432   2234577888888888      789999999998854 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                         ...++||||+ +++|.+++.... ..+++..+..++.|++.||+|||++ ||+||||||+||++.            
T Consensus       102 ---~~~~iv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~-~i~H~dlkp~NIl~~------------  164 (319)
T 2y4i_B          102 ---PHLAIITSLCKGRTLYSVVRDAK-IVLDVNKTRQIAQEIVKGMGYLHAK-GILHKDLKSKNVFYD------------  164 (319)
T ss_dssp             ---SCEEEECBCCCSEEHHHHTTSSC-CCCCSHHHHHHHHHHHHHHHHHHHT-TCCCCCCCSTTEEEC------------
T ss_pred             ---CceEEEeecccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhC-CccccCCChhhEEEe------------
Confidence               5799999999 789998886432 3589999999999999999999997 999999999999992            


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc---
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---  267 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~---  267 (447)
                                                                                   +..++|+|||++....   
T Consensus       165 -------------------------------------------------------------~~~~~l~Dfg~~~~~~~~~  183 (319)
T 2y4i_B          165 -------------------------------------------------------------NGKVVITDFGLFSISGVLQ  183 (319)
T ss_dssp             ---------------------------------------------------------------CCEECCCSCCC------
T ss_pred             -------------------------------------------------------------CCCEEEeecCCcccccccc
Confidence                                                                         3468999999875432   


Q ss_pred             -----cccccCCCCCCccChHHhhc---------CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHH
Q 013220          268 -----KQFAEEIQTRQYRAPEVILR---------AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMME  333 (447)
Q Consensus       268 -----~~~~~~~gt~~y~aPE~l~~---------~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~  333 (447)
                           .......|++.|+|||.+.+         ..++.++|||||||++|+|++|..||...+      .......+..
T Consensus       184 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~------~~~~~~~~~~  257 (319)
T 2y4i_B          184 AGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQP------AEAIIWQMGT  257 (319)
T ss_dssp             ----CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCC------HHHHHHHHHT
T ss_pred             ccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHhcc
Confidence                 12223358899999999974         347889999999999999999999997542      1111111100


Q ss_pred             HhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          334 LIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       334 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                        +..+.                                      ......+.++.+||.+||+.||++|||++++++.
T Consensus       258 --~~~~~--------------------------------------~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~  296 (319)
T 2y4i_B          258 --GMKPN--------------------------------------LSQIGMGKEISDILLFCWAFEQEERPTFTKLMDM  296 (319)
T ss_dssp             --TCCCC--------------------------------------CCCSSCCTTHHHHHHHHHCSSTTTSCCHHHHHHH
T ss_pred             --CCCCC--------------------------------------CCcCCCCHHHHHHHHHHhcCChhhCcCHHHHHHH
Confidence              00000                                      0111234578899999999999999999999863

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.95  E-value=2.2e-29  Score=266.83  Aligned_cols=184  Identities=17%  Similarity=0.134  Sum_probs=128.7

Q ss_pred             EEeecccCceEEEEEEeCCCCeEEEEEEechh-----------HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           41 QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA-----------AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        41 ~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~-----------~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      ....+.|++|.+..++....|+.|++|++..+           ....+.+.+|+++|+.+.     .|+||+++++++.+
T Consensus       239 ~~~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~-----~~~~i~~~~~~~ed  313 (569)
T 4azs_A          239 QNQPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPP-----AGFDAPAVLAHGEN  313 (569)
T ss_dssp             ECC-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCC-----TTCCCCCEEEEEEC
T ss_pred             hhccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcC-----CCCCeeEEEEEEEE
Confidence            34567888888888888888999999987543           344567999999999995     78999999999985


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                      .    ...||||||+ |++|.+.+...  ..+++.   .|+.||+.||+|+|++ |||||||||+|||+           
T Consensus       314 ~----~~~yLVMEyv~G~~L~d~i~~~--~~l~~~---~I~~QIl~AL~ylH~~-GIIHRDIKPeNILL-----------  372 (569)
T 4azs_A          314 A----QSGWLVMEKLPGRLLSDMLAAG--EEIDRE---KILGSLLRSLAALEKQ-GFWHDDVRPWNVMV-----------  372 (569)
T ss_dssp             S----SEEEEEEECCCSEEHHHHHHTT--CCCCHH---HHHHHHHHHHHHHHHT-TCEESCCCGGGEEE-----------
T ss_pred             C----CEEEEEEecCCCCcHHHHHHhC--CCCCHH---HHHHHHHHHHHHHHHC-CceeccCchHhEEE-----------
Confidence            4    7899999999 99999999754  346653   5889999999999997 99999999999999           


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                   +.++.+||+|||+|+....
T Consensus       373 -------------------------------------------------------------~~dg~vKL~DFGlAr~~~~  391 (569)
T 4azs_A          373 -------------------------------------------------------------DARQHARLIDFGSIVTTPQ  391 (569)
T ss_dssp             -------------------------------------------------------------CTTSCEEECCCTTEESCC-
T ss_pred             -------------------------------------------------------------CCCCCEEEeecccCeeCCC
Confidence                                                                         4467899999999976543


Q ss_pred             c---cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCC
Q 013220          269 Q---FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDML  312 (447)
Q Consensus       269 ~---~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~P  312 (447)
                      .   ....+||+.|+|||++.+. +..++|+||+|++++.+.++..+
T Consensus       392 ~~~~~~t~vGTp~YmAPE~l~g~-~~~~~d~~s~g~~~~~l~~~~~~  437 (569)
T 4azs_A          392 DCSWPTNLVQSFFVFVNELFAEN-KSWNGFWRSAPVHPFNLPQPWSN  437 (569)
T ss_dssp             --CCSHHHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred             CCccccCceechhhccHHHhCCC-CCCcccccccccchhhhccccch
Confidence            2   2345799999999999764 56789999999998877666444

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.89  E-value=1.1e-23  Score=221.74  Aligned_cols=179  Identities=17%  Similarity=0.162  Sum_probs=134.2

Q ss_pred             eEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---------HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           38 YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---------AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        38 y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---------~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      +...+.||+|+||+||+|.  ..+..+++|.....         ....+.+.+|+++++.+      +|+||+++..+..
T Consensus       338 ~~~~~~LG~G~fg~Vy~~~--~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l------~h~nIv~~~~~~~  409 (540)
T 3en9_A          338 KIPEHLIGKGAEADIKRDS--YLDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALV------KDFGIPAPYIFDV  409 (540)
T ss_dssp             ----------CCEEEEEEE--CSSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHG------GGGTCCCCCEEEE
T ss_pred             CCCCCEEeeCCCEEEEEEE--ECCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhc------CCCCcCceEEEEE
Confidence            3556789999999999994  45778888864321         11234578999999999      7889994444333


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCc
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                      .    ....|+||||+ +++|.+++..          +..++.|++.||+|||++ ||+||||||+|||+          
T Consensus       410 ~----~~~~~lVmE~~~ggsL~~~l~~----------~~~i~~qi~~aL~~LH~~-gIiHrDiKp~NILl----------  464 (540)
T 3en9_A          410 D----LDNKRIMMSYINGKLAKDVIED----------NLDIAYKIGEIVGKLHKN-DVIHNDLTTSNFIF----------  464 (540)
T ss_dssp             E----TTTTEEEEECCCSEEHHHHSTT----------CTHHHHHHHHHHHHHHHT-TEECTTCCTTSEEE----------
T ss_pred             e----CCccEEEEECCCCCCHHHHHHH----------HHHHHHHHHHHHHHHHHC-cCccCCCCHHHEEE----------
Confidence            2    24569999999 7999988753          468999999999999997 99999999999999          


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                    +.  .+||+|||++....
T Consensus       465 --------------------------------------------------------------~~--~~kL~DFGla~~~~  480 (540)
T 3en9_A          465 --------------------------------------------------------------DK--DLYIIDFGLGKISN  480 (540)
T ss_dssp             --------------------------------------------------------------SS--SEEECCCTTCEECC
T ss_pred             --------------------------------------------------------------CC--eEEEEECccCEECC
Confidence                                                                          33  79999999998765


Q ss_pred             ccc----------ccCCCCCCccChHHhhc--CCCCccchhHhHHHHHHHHhhCCCCC
Q 013220          268 KQF----------AEEIQTRQYRAPEVILR--AGYSFSVDMWSFACTAFELATGDMLF  313 (447)
Q Consensus       268 ~~~----------~~~~gt~~y~aPE~l~~--~~~~~~~DiwSlGvil~~l~~g~~Pf  313 (447)
                      ...          ...+||+.|+|||++..  ..|+..+|+||..+-..+.+.++-+|
T Consensus       481 ~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY  538 (540)
T 3en9_A          481 LDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARY  538 (540)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCC
T ss_pred             CccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence            421          24578999999999987  56788899999998888888777666

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.85  E-value=9.6e-22  Score=190.27  Aligned_cols=118  Identities=20%  Similarity=0.334  Sum_probs=92.5

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-------------------HhHHHHHHHHHHHHHhhcCCCC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-------------------QFAQAALHEIEVLSAVADGDPS   95 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-------------------~~~~~~~~E~~~l~~l~~~~~~   95 (447)
                      +..|.+.+.||+|+||.||+|++ .+++.||+|+++...                   .....+.+|+++++.+.     
T Consensus        89 ~~~~~~~~~iG~G~~g~Vy~~~~-~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~-----  162 (282)
T 1zar_A           89 GKVDAIGKLMGEGKESAVFNCYS-EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ-----  162 (282)
T ss_dssp             TSCSEEEEEEEECSSEEEEEEEE-TTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT-----
T ss_pred             CeEEEecCEeccCCCceEEEEEe-CCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc-----
Confidence            34566779999999999999999 889999999986432                   13456889999999994     


Q ss_pred             CcceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCC
Q 013220           96 NEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPEN  174 (447)
Q Consensus        96 ~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~N  174 (447)
                         | +++.+.+..     ...|+||||+ |++|.+ +.        ......++.|++.||+|||+. ||+||||||+|
T Consensus       163 ---~-~~v~~~~~~-----~~~~lvmE~~~g~~L~~-l~--------~~~~~~i~~qi~~~l~~lH~~-giiHrDlkp~N  223 (282)
T 1zar_A          163 ---G-LAVPKVYAW-----EGNAVLMELIDAKELYR-VR--------VENPDEVLDMILEEVAKFYHR-GIVHGDLSQYN  223 (282)
T ss_dssp             ---T-SSSCCEEEE-----ETTEEEEECCCCEEGGG-CC--------CSCHHHHHHHHHHHHHHHHHT-TEECSCCSTTS
T ss_pred             ---C-CCcCeEEec-----cceEEEEEecCCCcHHH-cc--------hhhHHHHHHHHHHHHHHHHHC-CCEeCCCCHHH
Confidence               2 344443322     3569999999 778876 31        123557999999999999996 99999999999


Q ss_pred             eEe
Q 013220          175 ILL  177 (447)
Q Consensus       175 ill  177 (447)
                      ||+
T Consensus       224 ILl  226 (282)
T 1zar_A          224 VLV  226 (282)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            999

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.77  E-value=1.9e-18  Score=164.73  Aligned_cols=134  Identities=18%  Similarity=0.180  Sum_probs=97.7

Q ss_pred             ccccCccccCC-ceEEEEeecccCceEEEEEEeCCCCeE--EEEEEechhHH-------------------------hHH
Q 013220           26 AVRVGDLFNGG-RYIAQRKLGWGQFSIVWLAYDTRTSSY--VALKIQKSAAQ-------------------------FAQ   77 (447)
Q Consensus        26 ~~~~g~~~~~~-~y~l~~~lG~G~~g~Vy~a~~~~~~~~--vaiK~~~~~~~-------------------------~~~   77 (447)
                      ++.+..+++.+ -|.+.+.||+|+||.||+|.+..++..  ||||+++....                         ...
T Consensus        36 ~~~l~~~~~~~~~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (258)
T 1zth_A           36 LKTLYKLSAKGYITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFI  115 (258)
T ss_dssp             HHHHHHHHHTTSEEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHH
T ss_pred             HHHHHHHHhCCCchhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHH
Confidence            33444455433 378999999999999999998777888  99998653211                         113


Q ss_pred             HHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEEEecccc------cHHHHHHhhccCCCCHHHHHHHHHH
Q 013220           78 AALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGD------SLLRLIKYSRYKGLELNKVREICKY  151 (447)
Q Consensus        78 ~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~~~------~L~~~~~~~~~~~l~~~~~~~i~~q  151 (447)
                      .+.+|+++++.+.+... .+|.++.   .        ...++||||+++      .|.+....     .++..+..++.|
T Consensus       116 ~~~~E~~~l~~l~~~~i-~~p~~~~---~--------~~~~lVmE~~g~~g~~~~~L~~~~~~-----~~~~~~~~i~~q  178 (258)
T 1zth_A          116 WTEKEFRNLERAKEAGV-SVPQPYT---Y--------MKNVLLMEFIGEDELPAPTLVELGRE-----LKELDVEGIFND  178 (258)
T ss_dssp             HHHHHHHHHHHHHHTTC-CCCCEEE---E--------ETTEEEEECCEETTEECCBHHHHGGG-----GGGSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC-CCCeEEE---c--------CCCEEEEEecCCCCCccccHHHHhhc-----cChHHHHHHHHH
Confidence            57889999999976532 2333332   1        246899999953      66654321     234567899999


Q ss_pred             HHHHHHHHH-hhCCcccccCCCCCeEe
Q 013220          152 ILTGLDYLH-RELGIIHTDLKPENILL  177 (447)
Q Consensus       152 il~aL~~lH-~~~gIiH~Dikp~Nill  177 (447)
                      ++.||.+|| +. ||+||||||+|||+
T Consensus       179 i~~~l~~lH~~~-givHrDlkp~NILl  204 (258)
T 1zth_A          179 VVENVKRLYQEA-ELVHADLSEYNIMY  204 (258)
T ss_dssp             HHHHHHHHHHTS-CEECSSCSTTSEEE
T ss_pred             HHHHHHHHHHHC-CEEeCCCCHHHEEE
Confidence            999999999 85 99999999999999

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.58  E-value=1.8e-15  Score=151.58  Aligned_cols=133  Identities=17%  Similarity=0.222  Sum_probs=87.8

Q ss_pred             ccccCccccC-CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH---------------hHH--------HHHH
Q 013220           26 AVRVGDLFNG-GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ---------------FAQ--------AALH   81 (447)
Q Consensus        26 ~~~~g~~~~~-~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~---------------~~~--------~~~~   81 (447)
                      .+.+-.+.+. --|.+.++||.|++|.||+|.+. +|+.||||+++....               ...        ....
T Consensus        84 ~LAL~~L~~rg~iY~I~~~IG~Gk~a~VY~a~d~-~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~k  162 (397)
T 4gyi_A           84 YLALHTHAARKDVYSVGSRIGVGKESDIMIVADE-KGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIK  162 (397)
T ss_dssp             HHHHHHHHHTTSCSEEEEEEEECSSEEEEEEECT-TCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCEEEecCEeeeCCceEEEEEECC-CCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            3333344442 33999999999999999999874 689999998653210               000        1234


Q ss_pred             HHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH
Q 013220           82 EIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLH  160 (447)
Q Consensus        82 E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH  160 (447)
                      |...|.++.+... .   +...+..        ...+|||||+ |..+..+        .....+..++.|++.+|.+||
T Consensus       163 E~~nL~rL~~~gv-~---vp~p~~~--------~~~~LVME~i~G~~L~~l--------~~~~~~~~l~~qll~~l~~lH  222 (397)
T 4gyi_A          163 EFAFMKALYEEGF-P---VPEPIAQ--------SRHTIVMSLVDALPMRQV--------SSVPDPASLYADLIALILRLA  222 (397)
T ss_dssp             HHHHHHHHHHTTC-S---CCCEEEE--------ETTEEEEECCSCEEGGGC--------CCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCC-C---CCeeeec--------cCceEEEEecCCccHhhh--------cccHHHHHHHHHHHHHHHHHH
Confidence            6666666643211 0   1111111        1236999999 6566432        122345678899999999999


Q ss_pred             hhCCcccccCCCCCeEeeec
Q 013220          161 RELGIIHTDLKPENILLVST  180 (447)
Q Consensus       161 ~~~gIiH~Dikp~Nill~~~  180 (447)
                      +. |||||||||.|||+...
T Consensus       223 ~~-gIVHrDLKp~NILl~~d  241 (397)
T 4gyi_A          223 KH-GLIHGDFNEFNILIREE  241 (397)
T ss_dssp             HT-TEECSCCSTTSEEEEEE
T ss_pred             HC-CCcCCCCCHHHEEEeCC
Confidence            96 99999999999999763

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.09  E-value=4.3e-10  Score=106.33  Aligned_cols=112  Identities=11%  Similarity=0.064  Sum_probs=80.8

Q ss_pred             CccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           30 GDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        30 g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      +..+.  .|.+...++.|+.+.||++...  +..+++|+..... .....+.+|.++++.+..     +..+.+++.+..
T Consensus        10 ~~~l~--~~~~~~~~~g~s~~~v~~~~~~--~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~-----~~~vP~v~~~~~   80 (263)
T 3tm0_A           10 KKLIE--KYRCVKDTEGMSPAKVYKLVGE--NENLYLKMTDSRYKGTTYDVEREKDMMLWLEG-----KLPVPKVLHFER   80 (263)
T ss_dssp             HHHHT--TSEEEECCSCCSSSEEEEEECS--SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTT-----TSCCCCEEEEEE
T ss_pred             HHHhc--cceeEeeccCCCCCeEEEEECC--CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhc-----CCCCCeEEEEEe
Confidence            44553  4999999999999999999753  6789999886532 223468899999999963     334555666554


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR  161 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~  161 (447)
                      .    ....|+||||+ |.++....       .+......++.++..+|+.||+
T Consensus        81 ~----~~~~~lv~e~i~G~~l~~~~-------~~~~~~~~~~~~l~~~l~~LH~  123 (263)
T 3tm0_A           81 H----DGWSNLLMSEADGVLCSEEY-------EDEQSPEKIIELYAECIRLFHS  123 (263)
T ss_dssp             E----TTEEEEEEECCSSEEHHHHC-------CTTTCHHHHHHHHHHHHHHHHH
T ss_pred             c----CCceEEEEEecCCeehhhcc-------CCcccHHHHHHHHHHHHHHHhC
Confidence            3    35789999999 66776542       1122335778899999999998

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=98.83  E-value=1.2e-08  Score=95.56  Aligned_cols=112  Identities=15%  Similarity=0.054  Sum_probs=71.6

Q ss_pred             cccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccc
Q 013220           27 VRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDH  106 (447)
Q Consensus        27 ~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~  106 (447)
                      ..+...+.  .|.+....+.|..+.||++.. .++..+++|+....  ....+..|.++++.+.+..    ..+.+++..
T Consensus        13 ~~l~~~~~--~~~~~~~~~gg~~~~v~~~~~-~~g~~~vlK~~~~~--~~~~~~~E~~~l~~l~~~~----~~vP~~~~~   83 (264)
T 1nd4_A           13 AAWVERLF--GYDWAQQTIGCSDAAVFRLSA-QGRPVLFVKTDLSG--ALNELQDEAARLSWLATTG----VPCAAVLDV   83 (264)
T ss_dssp             GGGTTTTT--TCEEEECSCTTSSCEEEEEEC-TTSCCEEEEEECSC--TTSCHHHHHHHHHHHHTTT----CCBCCEEEE
T ss_pred             HHHHHhcC--CCceEecccCCCCceEEEEec-CCCCeEEEEeCCcc--cchhhhHHHHHHHHHHhCC----CCCCeEEEe
Confidence            34455553  477655555666799999964 45678999987654  2356789999999996431    124445555


Q ss_pred             ccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh
Q 013220          107 FKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR  161 (447)
Q Consensus       107 ~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~  161 (447)
                      ...    +...++||||+ |.++.  .     ...+   ...++.++...|+.||+
T Consensus        84 ~~~----~~~~~~v~e~i~G~~l~--~-----~~~~---~~~~~~~l~~~l~~lh~  125 (264)
T 1nd4_A           84 VTE----AGRDWLLLGEVPGQDLL--S-----SHLA---PAEKVSIMADAMRRLHT  125 (264)
T ss_dssp             EEC----SSCEEEEEECCSSEETT--T-----SCCC---HHHHHHHHHHHHHHHTT
T ss_pred             ccC----CCCCEEEEEecCCcccC--c-----CcCC---HhHHHHHHHHHHHHHhC
Confidence            442    24689999999 66662  1     1112   12556677777777776

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.69  E-value=4.4e-08  Score=97.00  Aligned_cols=113  Identities=14%  Similarity=0.160  Sum_probs=74.9

Q ss_pred             eEEEEeecccCceEEEEEEeCCCCeEEEEEEec--hhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           38 YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQK--SAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        38 y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~--~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      ..-.+.|+.|.++.||+....  +..+++|+..  ...  .....+.+|.++++.+...    +..+.+++..+.+... 
T Consensus        40 ~~~~~~l~~G~sn~~y~v~~~--~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~----~vpvP~~~~~~~~~~~-  112 (359)
T 3dxp_A           40 PLSVEQFKGGQSNPTFKLVTP--GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGT----DVPVAKMYALCEDESV-  112 (359)
T ss_dssp             CCEEEECCC-CCSCEEEEECS--SCEEEEECCCC----------CHHHHHHHHHHHTTS----SSCCCCEEEEECCTTT-
T ss_pred             CceEEEcCCcccceEEEEEEC--CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcC----CCCCCcEEEECCCCCc-
Confidence            345678999999999999754  4678899765  332  2345788999999999752    2345666665543311 


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR  161 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~  161 (447)
                      ....++||||+ |..+.+.    ....++......++.++..+|+.||+
T Consensus       113 ~g~~~~vme~v~G~~l~~~----~~~~l~~~~~~~~~~~l~~~La~LH~  157 (359)
T 3dxp_A          113 IGRAFYIMEFVSGRVLWDQ----SLPGMSPAERTAIYDEMNRVIAAMHT  157 (359)
T ss_dssp             TSSCEEEEECCCCBCCCCT----TCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEEecCCeecCCC----ccccCCHHHHHHHHHHHHHHHHHHhC
Confidence            13578999999 5444321    12346777888899999999999997

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.67  E-value=4.5e-08  Score=94.69  Aligned_cols=106  Identities=17%  Similarity=0.101  Sum_probs=68.0

Q ss_pred             EeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEEE
Q 013220           42 RKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVL  121 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvm  121 (447)
                      +.++.|..+.||+..     ..+++|+.... .....+.+|.++++.+........|.++   ...... ......|+||
T Consensus        26 ~~~~~G~~n~v~~v~-----~~~vlR~~~~~-~~~~~~~~E~~~l~~l~~~~~v~vP~~~---~~~~~~-~~~~~~~~vm   95 (304)
T 3sg8_A           26 EISGEGNDCIAYEIN-----RDFIFKFPKHS-RGSTNLFNEVNILKRIHNKLPLPIPEVV---FTGMPS-ETYQMSFAGF   95 (304)
T ss_dssp             CEEEECSSEEEEEST-----TSEEEEEESSH-HHHHHHHHHHHHHHHHTTSSSSCCCCEE---EECCCC-SSCSCSCEEE
T ss_pred             EecCCCCcceEEEEC-----CEEEEEecCCc-chHHHHHHHHHHHHHHHhcCCCCCCceE---eecCCC-CCCCcceEEE
Confidence            358899999999873     46899987654 3456788999999998543222233332   221111 0112458899


Q ss_pred             ecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh
Q 013220          122 EFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR  161 (447)
Q Consensus       122 E~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~  161 (447)
                      +++ |..+.....    ..++..+...++.++...++.||+
T Consensus        96 ~~i~G~~l~~~~~----~~l~~~~~~~~~~~l~~~la~LH~  132 (304)
T 3sg8_A           96 TKIKGVPLTPLLL----NNLPKQSQNQAAKDLARFLSELHS  132 (304)
T ss_dssp             ECCCCEECCHHHH----HTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCeECCcccc----ccCCHHHHHHHHHHHHHHHHHHHc
Confidence            999 656544322    226667777778888888888875

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.14  E-value=3e-05  Score=73.02  Aligned_cols=102  Identities=14%  Similarity=0.147  Sum_probs=65.9

Q ss_pred             eecccCce-EEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEEE
Q 013220           43 KLGWGQFS-IVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVL  121 (447)
Q Consensus        43 ~lG~G~~g-~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvm  121 (447)
                      .+..|..+ .||+......+..+.+|+....  ....+..|.+.|+.+...     --|.+++.+..+    ....++||
T Consensus        31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~--~~~~~~~E~~~l~~l~~~-----vPVP~v~~~~~~----~~~~~lvm   99 (272)
T 4gkh_A           31 RDNVGQSGATIYRLYGKPNAPELFLKHGKGS--VANDVTDEMVRLNWLTAF-----MPLPTIKHFIRT----PDDAWLLT   99 (272)
T ss_dssp             EEECSSSSCEEEEEECCTTCCCEEEEEEETH--HHHHHHHHHHHHHHHTTT-----SCCCCEEEEEEE----TTEEEEEE
T ss_pred             EccCCCcCCeEEEEEecCCCeEEEEEECCCC--CHhHHHHHHHHHHHhccC-----CCcCeEEEEEEE----CCeEEEEE
Confidence            34445554 7999887777888999986644  345788899999999642     224455555443    25789999


Q ss_pred             ecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHh
Q 013220          122 EFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR  161 (447)
Q Consensus       122 E~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~  161 (447)
                      |++ |.++.+.....      ......+..++...|+.||+
T Consensus       100 e~l~G~~~~~~~~~~------~~~~~~~~~~l~~~L~~Lh~  134 (272)
T 4gkh_A          100 TAIPGKTAFQVLEEY------PDSGENIVDALAVFLRRLHS  134 (272)
T ss_dssp             ECCCSEEHHHHHHHC------GGGHHHHHHHHHHHHHHHHT
T ss_pred             EeeCCccccccccCC------HHHHHHHHHHHHHHHHHhcC
Confidence            999 66666554321      12233455666666666664

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.12  E-value=4.4e-05  Score=73.75  Aligned_cols=78  Identities=19%  Similarity=0.080  Sum_probs=51.2

Q ss_pred             EEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEE
Q 013220           41 QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMV  120 (447)
Q Consensus        41 ~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lv  120 (447)
                      .+.++.|....||+.     +..+++|+.... .....+..|.++|+.+.+......|.   .+.+...   .....++|
T Consensus        24 v~~l~~G~~n~v~~v-----g~~~VlR~~~~~-~~~~~~~~E~~~L~~L~~~~~v~VP~---~~~~~~~---~~g~~~~v   91 (306)
T 3tdw_A           24 VESLGEGFRNYAILV-----NGDWVFRFPKSQ-QGADELNKEIQLLPLLVGCVKVNIPQ---YVYIGKR---SDGNPFVG   91 (306)
T ss_dssp             EEEEEECSSEEEEEE-----TTTEEEEEESSH-HHHHHHHHHHHHHHHHTTTCSSBCCC---EEEEEEC---TTSCEEEE
T ss_pred             eeecCCCcceeEEEE-----CCEEEEEecCCc-hHHHHHHHHHHHHHHHHhcCCCCCCC---eEeeccc---CCCceEEE
Confidence            345788898999998     467889986543 33567899999999997532222233   3333221   22356799


Q ss_pred             Eecc-cccHHH
Q 013220          121 LEFL-GDSLLR  130 (447)
Q Consensus       121 mE~~-~~~L~~  130 (447)
                      ||++ |..+..
T Consensus        92 ~e~i~G~~l~~  102 (306)
T 3tdw_A           92 YRKVQGQILGE  102 (306)
T ss_dssp             EECCCSEECHH
T ss_pred             EeccCCeECch
Confidence            9999 655554

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=97.55  E-value=0.00011  Score=73.41  Aligned_cols=78  Identities=19%  Similarity=0.184  Sum_probs=47.9

Q ss_pred             EEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--------HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           39 IAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--------QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        39 ~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--------~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      .-.+.||.|..+.||++....++..+++|......        .....+..|.++++.+....   ...+.+++.+  + 
T Consensus        33 ~~~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~---~~~vP~~~~~--d-  106 (397)
T 2olc_A           33 LTCQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHV---PHLVPRVFYS--D-  106 (397)
T ss_dssp             CEEEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTC---GGGSCCEEEE--E-
T ss_pred             eEEEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhC---CCCcCeEEEE--c-
Confidence            34678999999999999766667889999754221        12345678999999886421   1123333322  1 


Q ss_pred             CCCcceEEEEEeccc
Q 013220          111 GPNGQHLCMVLEFLG  125 (447)
Q Consensus       111 ~~~~~~~~lvmE~~~  125 (447)
                         ....++|||+++
T Consensus       107 ---~~~~~lvmE~l~  118 (397)
T 2olc_A          107 ---TEMAVTVMEDLS  118 (397)
T ss_dssp             ---TTTTEEEECCCT
T ss_pred             ---CCccEEEEEeCC
Confidence               123579999993

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=97.34  E-value=0.0035  Score=60.48  Aligned_cols=78  Identities=21%  Similarity=0.256  Sum_probs=42.3

Q ss_pred             EEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeec-ccccccCCCcceEEE
Q 013220           41 QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLI-DHFKHAGPNGQHLCM  119 (447)
Q Consensus        41 ~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~-~~~~~~~~~~~~~~l  119 (447)
                      .+.|+.|..+.||+....  +..+++|+.....   .....|.++++.+..... ..|.++... +.+...  .+...++
T Consensus        37 ~~~l~gG~~n~~~~v~~~--~~~~vlk~~~~~~---~~~~~e~~~l~~L~~~g~-~vp~~~~~~~g~~~~~--~~~~~~~  108 (346)
T 2q83_A           37 IDVIQGNQMALVWKVHTD--SGAVCLKRIHRPE---KKALFSIFAQDYLAKKGM-NVPGILPNKKGSLYSK--HGSFLFV  108 (346)
T ss_dssp             EEECC----CEEEEEEET--TEEEEEEEECSCH---HHHHHHHHHHHHHHHHTC-SSCCBCCCTTSCSCEE--ETTEEEE
T ss_pred             eeeccccccCcEEEEEeC--CCCEEEEecCCCH---HHHHHHHHHHHHHHHcCC-CCCceeecCCCCEEEE--ECCEEEE
Confidence            345666778999999753  3458999887532   334567777777754321 333333311 101000  1246889


Q ss_pred             EEecc-cc
Q 013220          120 VLEFL-GD  126 (447)
Q Consensus       120 vmE~~-~~  126 (447)
                      +|+|+ |.
T Consensus       109 l~~~i~G~  116 (346)
T 2q83_A          109 VYDWIEGR  116 (346)
T ss_dssp             EEECCCCB
T ss_pred             EEEeecCc
Confidence            99999 53

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=97.22  E-value=0.00038  Score=68.22  Aligned_cols=86  Identities=12%  Similarity=0.059  Sum_probs=52.8

Q ss_pred             eEEEEee-cccCceEEEEEEeC---C---CCeEEEEEEechhHH----hHHHHHHHHHHHHHhhcCCCCCcceeeeeccc
Q 013220           38 YIAQRKL-GWGQFSIVWLAYDT---R---TSSYVALKIQKSAAQ----FAQAALHEIEVLSAVADGDPSNEKCVIRLIDH  106 (447)
Q Consensus        38 y~l~~~l-G~G~~g~Vy~a~~~---~---~~~~vaiK~~~~~~~----~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~  106 (447)
                      ....+.| +.|..+.+|+....   .   .+..+++|+......    ....+..|.++++.+....   ...+.+++..
T Consensus        22 v~~~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~---~vpvP~v~~~   98 (357)
T 3ats_A           22 VTVESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELT---DVPVPRVRWI   98 (357)
T ss_dssp             EEEEEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHC---CSCCCCEEEE
T ss_pred             eEEEEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcC---CCCCCcEEEE
Confidence            3445678 88999999998643   1   156889998664431    1356788999999997431   1224444444


Q ss_pred             ccccCCCcceEEEEEecc-ccc
Q 013220          107 FKHAGPNGQHLCMVLEFL-GDS  127 (447)
Q Consensus       107 ~~~~~~~~~~~~lvmE~~-~~~  127 (447)
                      ....... ...++|||++ |..
T Consensus        99 ~~~~~~~-g~~~~v~e~l~G~~  119 (357)
T 3ats_A           99 ETTGDVL-GTPFFLMDYVEGVV  119 (357)
T ss_dssp             ECSSTTT-SSCEEEEECCCCBC
T ss_pred             ccCCCcc-CCceEEEEecCCCC
Confidence            3322111 2457899999 533

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=96.64  E-value=0.008  Score=57.32  Aligned_cols=69  Identities=17%  Similarity=0.103  Sum_probs=44.0

Q ss_pred             EEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEE
Q 013220           41 QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMV  120 (447)
Q Consensus        41 ~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lv  120 (447)
                      .+.|+.|..+.+|+.      ..+++|+.............|.++++.+......  |.++   ....      ..-+++
T Consensus        23 i~~l~gG~tN~~~~~------~~~vlR~~~~~~~~~~~r~~E~~~l~~l~~~g~~--P~~~---~~~~------~~~~~v   85 (301)
T 3dxq_A           23 PLERLGGLTNLVFRA------GDLCLRIPGKGTEEYINRANEAVAAREAAKAGVS--PEVL---HVDP------ATGVMV   85 (301)
T ss_dssp             CEEEESCSSEEEEEE------TTEEEEEECC----CCCHHHHHHHHHHHHHTTSS--CCEE---EECT------TTCCEE
T ss_pred             eeEcCCcccccccee------eeEEEECCCCCccceeCHHHHHHHHHHHHHcCCC--CceE---EEEC------CCCEEE
Confidence            567888999999999      4688998765432222346799999988755421  4443   3221      224688


Q ss_pred             Eecc-cc
Q 013220          121 LEFL-GD  126 (447)
Q Consensus       121 mE~~-~~  126 (447)
                      +||+ ++
T Consensus        86 ~e~i~~g   92 (301)
T 3dxq_A           86 TRYIAGA   92 (301)
T ss_dssp             EECCTTC
T ss_pred             EeecCCC
Confidence            9999 54

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=96.10  E-value=0.015  Score=58.33  Aligned_cols=77  Identities=13%  Similarity=0.191  Sum_probs=43.1

Q ss_pred             EEEEeecccCceEEEEEEeCCCCeEEEEEEech-------h-HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           39 IAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKS-------A-AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        39 ~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~-------~-~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      .-.+.||.|..+.||++..  ++..+++|....       . .........|.+++..+...   ....+.+++.+..  
T Consensus        37 ~~i~~l~~G~~n~vyrv~~--~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~---~~~~vP~v~~~~~--  109 (420)
T 2pyw_A           37 LVIKEVGDGNLNFVFIVVG--SSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNL---SPDHVPEVYHFDR--  109 (420)
T ss_dssp             CEEEECCCSSSCEEEEEEC--SSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHH---SGGGSCCEEEEET--
T ss_pred             eEEEEccCCCcEEEEEEEc--CCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhh---CCCCCCeEEEECC--
Confidence            3457789999999999954  467899993211       0 10012233355555444221   1123444444321  


Q ss_pred             CCCcceEEEEEecc-cc
Q 013220          111 GPNGQHLCMVLEFL-GD  126 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~  126 (447)
                          ...++|||++ ++
T Consensus       110 ----~~~~lv~e~l~~g  122 (420)
T 2pyw_A          110 ----TMALIGMRYLEPP  122 (420)
T ss_dssp             ----TTTEEEECCCCTT
T ss_pred             ----CccEEEEeecCCc
Confidence                3468999999 65

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=95.73  E-value=0.018  Score=57.19  Aligned_cols=70  Identities=13%  Similarity=0.139  Sum_probs=42.0

Q ss_pred             EeecccCceEEEEEEeCC-------CCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           42 RKLGWGQFSIVWLAYDTR-------TSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        42 ~~lG~G~~g~Vy~a~~~~-------~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      +.|..|-...+|++....       .+..+++|+............+|.++++.+.....     ..+++..+.    ++
T Consensus        56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~~~~~~~~rE~~vl~~L~~~gv-----~P~ll~~~~----~g  126 (379)
T 3feg_A           56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAILAERSL-----GPQLYGVFP----EG  126 (379)
T ss_dssp             EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC---CCHHHHHHHHHHHHHHHHTTS-----SCCEEEEET----TE
T ss_pred             EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCccchHHHHHHHHHHHHHHHhcCC-----CCeEEEEcC----Cc
Confidence            467668889999997642       34789999875433334566789999999976543     133444432    22


Q ss_pred             ceEEEEEecc
Q 013220          115 QHLCMVLEFL  124 (447)
Q Consensus       115 ~~~~lvmE~~  124 (447)
                          +||||+
T Consensus       127 ----~v~e~i  132 (379)
T 3feg_A          127 ----RLEQYI  132 (379)
T ss_dssp             ----EEEECC
T ss_pred             ----cEEEEe
Confidence                899999

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=95.42  E-value=0.15  Score=48.60  Aligned_cols=81  Identities=9%  Similarity=0.016  Sum_probs=45.4

Q ss_pred             eEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeec-ccccccCCCcce
Q 013220           38 YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLI-DHFKHAGPNGQH  116 (447)
Q Consensus        38 y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~-~~~~~~~~~~~~  116 (447)
                      ..-.+.|+.|....+|+....  +..+++|+.... .....+..|.++++.+..... ..|.++... +.....  ....
T Consensus        24 ~~~~~~i~~G~~n~~~~v~~~--~g~~vlk~~~~~-~~~~~l~~e~~~l~~L~~~g~-~vP~~~~~~~g~~~~~--~~g~   97 (322)
T 2ppq_A           24 LTSYKGIAEGVENSNFLLHTT--KDPLILTLYEKR-VEKNDLPFFLGLMQHLAAKGL-SCPLPLPRKDGELLGE--LSGR   97 (322)
T ss_dssp             EEEEEEECC---EEEEEEEES--SCCEEEEEECC----CCHHHHHHHHHHHHHHTTC-CCCCBCCBTTCCSCEE--ETTE
T ss_pred             ceEeeccCCCcccceEEEEeC--CccEEEEEeCCC-CCHHHHHHHHHHHHHHHHCCC-CCCcccCCCCCCEEEE--ECCE
Confidence            344567888888999999754  236889987653 123456779999998875421 223333211 000000  1135


Q ss_pred             EEEEEecc
Q 013220          117 LCMVLEFL  124 (447)
Q Consensus       117 ~~lvmE~~  124 (447)
                      .+++|+++
T Consensus        98 ~~~l~~~l  105 (322)
T 2ppq_A           98 PAALISFL  105 (322)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEeC
Confidence            78999999

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=95.21  E-value=0.034  Score=54.57  Aligned_cols=71  Identities=14%  Similarity=0.126  Sum_probs=42.2

Q ss_pred             EEeecccCceEEEEEEeCC--------CCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           41 QRKLGWGQFSIVWLAYDTR--------TSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        41 ~~~lG~G~~g~Vy~a~~~~--------~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      .+.|+.|....+|+.....        .+..+++|+.............|.++++.+.....     +.+++..+.    
T Consensus        38 ~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~~~~~~~E~~~l~~L~~~g~-----~P~~~~~~~----  108 (369)
T 3c5i_A           38 VKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDELYNTISEFEVYKTMSKYKI-----APQLLNTFN----  108 (369)
T ss_dssp             EEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGGTSCHHHHHHHHHHHHHTTS-----SCCEEEEET----
T ss_pred             EEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccceecHHHHHHHHHHHHhcCC-----CCceEEecC----
Confidence            4567888889999997543        13688999876543222234679999999875431     223343321    


Q ss_pred             CcceEEEEEecc
Q 013220          113 NGQHLCMVLEFL  124 (447)
Q Consensus       113 ~~~~~~lvmE~~  124 (447)
                          -++||||+
T Consensus       109 ----~~~v~e~i  116 (369)
T 3c5i_A          109 ----GGRIEEWL  116 (369)
T ss_dssp             ----TEEEEECC
T ss_pred             ----CcEEEEEe
Confidence                25799998

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=95.17  E-value=0.096  Score=49.30  Aligned_cols=81  Identities=14%  Similarity=0.025  Sum_probs=56.0

Q ss_pred             ccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           31 DLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        31 ~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      ++. |.+..-.+.+|.|..+.||+.+. .+|+.|.+|+..... .....+..|.+.|+.+........|.++   ..   
T Consensus        11 ~l~-G~~v~~v~~~g~G~~~~vyrv~l-~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~---~~---   82 (288)
T 3f7w_A           11 ELT-GREVAAVAERGHSHRWHLYRVEL-ADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVA---GW---   82 (288)
T ss_dssp             HHH-CCCEEEEEEEEEETTEEEEEEEE-TTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEE---EE---
T ss_pred             Hhc-CCCeEEEEecCCCCCeEEEEEEE-CCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEE---ec---
Confidence            344 36788899999999999999975 457889999865432 2234678899999999754333333333   22   


Q ss_pred             cCCCcceEEEEEecc
Q 013220          110 AGPNGQHLCMVLEFL  124 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~  124 (447)
                           ..-++||||+
T Consensus        83 -----~~~~lv~e~l   92 (288)
T 3f7w_A           83 -----DDRTLAMEWV   92 (288)
T ss_dssp             -----ETTEEEEECC
T ss_pred             -----cCceEEEEee
Confidence                 1236889998

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=95.13  E-value=0.18  Score=48.18  Aligned_cols=76  Identities=13%  Similarity=0.098  Sum_probs=46.1

Q ss_pred             eecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC--CCcceEEEE
Q 013220           43 KLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG--PNGQHLCMV  120 (447)
Q Consensus        43 ~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~--~~~~~~~lv  120 (447)
                      .++ |....||+.... +++.+++|+..........+..|.++++.+..... .   +.+.+.. ....  ..+...+++
T Consensus        33 ~l~-g~~n~~y~v~~~-~g~~~vlK~~~~~~~~~~~~~~E~~~~~~L~~~g~-~---vp~~~~~-~g~~~~~~~g~~~~l  105 (328)
T 1zyl_A           33 PLN-SYENRVYQFQDE-DRRRFVVKFYRPERWTADQILEEHQFALQLVNDEV-P---VAAPVAF-NGQTLLNHQGFYFAV  105 (328)
T ss_dssp             EEC-CSSSEEEEECCT-TCCCEEEEEECTTTSCHHHHHHHHHHHHHHHHTTC-S---BCCCCCB-TTBSCEEETTEEEEE
T ss_pred             eec-CcccceEEEEcC-CCCEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCC-e---ecceeec-CCcEEEEECCEEEEE
Confidence            456 788899988542 45679999886433334567779999998875421 2   3333332 1000  012356889


Q ss_pred             Eeccc
Q 013220          121 LEFLG  125 (447)
Q Consensus       121 mE~~~  125 (447)
                      |++++
T Consensus       106 ~~~i~  110 (328)
T 1zyl_A          106 FPSVG  110 (328)
T ss_dssp             EECCC
T ss_pred             EEecC
Confidence            99993

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=95.05  E-value=0.1  Score=47.41  Aligned_cols=32  Identities=13%  Similarity=0.193  Sum_probs=26.5

Q ss_pred             cHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH
Q 013220          127 SLLRLIKYSRYKGLELNKVREICKYILTGLDYL  159 (447)
Q Consensus       127 ~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~l  159 (447)
                      +|.+++... ..+++++++..+++|.+.+|.-+
T Consensus        34 SL~eIL~~~-~~PlsEEqaWALc~Qc~~~L~~~   65 (229)
T 2yle_A           34 SLEEILRLY-NQPINEEQAWAVCYQCCGSLRAA   65 (229)
T ss_dssp             EHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHc-CCCcCHHHHHHHHHHHHHHHHhh
Confidence            677777654 47899999999999999988765

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=94.49  E-value=0.21  Score=50.78  Aligned_cols=72  Identities=13%  Similarity=0.141  Sum_probs=44.9

Q ss_pred             EEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEE
Q 013220           40 AQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCM  119 (447)
Q Consensus        40 l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~l  119 (447)
                      -.+.|+.|-...+|++.....+..+++|+........-....|.++++.+.....     ..+++..+.    ++    +
T Consensus       112 ~i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~idR~~E~~vl~~L~~~gl-----~P~ll~~~~----~G----~  178 (458)
T 2qg7_A          112 EFQIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEIINREREKKISCILYNKNI-----AKKIYVFFT----NG----R  178 (458)
T ss_dssp             EEEEECC--CEEEEEEEETTTTEEEEEEEECC-CCSCSCHHHHHHHHHHHTTSSS-----BCCEEEEET----TE----E
T ss_pred             EEEEcCCCeEeEEEEEEECCCCceEEEEECCCChhhhcCHHHHHHHHHHHHhcCC-----CCCEEEEeC----Ce----E
Confidence            3567888999999999875445789999875432111123589999999964331     244555442    22    4


Q ss_pred             EEecc
Q 013220          120 VLEFL  124 (447)
Q Consensus       120 vmE~~  124 (447)
                      ||||+
T Consensus       179 v~e~I  183 (458)
T 2qg7_A          179 IEEFM  183 (458)
T ss_dssp             EEECC
T ss_pred             EEEee
Confidence            99998

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=94.05  E-value=0.22  Score=47.80  Aligned_cols=98  Identities=19%  Similarity=0.200  Sum_probs=67.5

Q ss_pred             eEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceE
Q 013220           38 YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHL  117 (447)
Q Consensus        38 y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~  117 (447)
                      -.-.+.|+.|..+.+|+...  .+..+++|+....  ....+..|.+.|+.+.....   ..|.+.+.....    ....
T Consensus        38 i~~~~~l~gG~~n~~y~v~~--~~~~~vlK~~~~~--~~~~~~~E~~~L~~L~~~~~---v~VP~vl~~~~~----~g~~  106 (312)
T 3jr1_A           38 IKHKEKLYSGEMNEIWLIND--EVQTVFVKINERS--YRSMFRAEADQLALLAKTNS---INVPLVYGIGNS----QGHS  106 (312)
T ss_dssp             CCEEEEECCSSSSEEEEEES--SSCEEEEEEEEGG--GHHHHHHHHHHHHHHHHTTS---SBCCCEEEEEEC----SSEE
T ss_pred             eeeeEEeCCccceeeeEEEE--CCCeEEEEeCCcc--cHHHHHHHHHHHHHHHhhCC---CCcceEEEEeec----CCce
Confidence            34467789999999999975  4678889987643  25678899999999975422   234444444332    2478


Q ss_pred             EEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhh
Q 013220          118 CMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRE  162 (447)
Q Consensus       118 ~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~  162 (447)
                      ++|||++ |..+            +.    ..+.++..+|+.||+.
T Consensus       107 ~lvme~l~G~~~------------~~----~~~~~lG~~LA~LH~~  136 (312)
T 3jr1_A          107 FLLLEALNKSKN------------KQ----SSFTIFAEKIAQLHQI  136 (312)
T ss_dssp             EEEEECCCCCCC------------CT----THHHHHHHHHHHHHHC
T ss_pred             EEEEEeccCCCC------------Cc----hhHHHHHHHHHHHHcC
Confidence            9999999 4432            11    2356788889999984

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=94.02  E-value=0.19  Score=48.31  Aligned_cols=76  Identities=12%  Similarity=0.018  Sum_probs=36.0

Q ss_pred             EeecccCceE-EEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEE
Q 013220           42 RKLGWGQFSI-VWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMV  120 (447)
Q Consensus        42 ~~lG~G~~g~-Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lv  120 (447)
                      +.|+.|.... +|+... .++..+++|......  ...+..|+++++.+.... ..   +.+++..-..   .+   +++
T Consensus        24 ~~l~gg~s~~~~~r~~~-~~~~~~vlk~~~~~~--~~~~~~e~~~l~~L~~~g-~~---vP~v~~~d~~---~g---~ll   90 (333)
T 3csv_A           24 TPLAGDASSRRYQRLRS-PTGAKAVLMDWSPEE--GGDTQPFVDLAQYLRNLD-IS---APEIYAEEHA---RG---LLL   90 (333)
T ss_dssp             CC--------CCEEEEC-TTCCEEEEEECCTTT--TCCSHHHHHHHHHHHHTT-CB---CCCEEEEETT---TT---EEE
T ss_pred             eECCCCCCCceEEEEEc-CCCCeEEEEECCCCC--CccccHHHHHHHHHHhCC-CC---CCceeeecCC---CC---EEE
Confidence            3455454444 667643 225567777544321  134567888888886532 12   3333332111   22   689


Q ss_pred             Eeccc-ccHHH
Q 013220          121 LEFLG-DSLLR  130 (447)
Q Consensus       121 mE~~~-~~L~~  130 (447)
                      ||+++ ..+..
T Consensus        91 ~e~l~~~~l~~  101 (333)
T 3csv_A           91 IEDLGDALFTE  101 (333)
T ss_dssp             ECCCCSCBHHH
T ss_pred             EeeCCCcchHH
Confidence            99994 44543

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=93.97  E-value=0.18  Score=50.63  Aligned_cols=71  Identities=11%  Similarity=0.172  Sum_probs=46.4

Q ss_pred             EEEeecccCceEEEEEEeCC-------CCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           40 AQRKLGWGQFSIVWLAYDTR-------TSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        40 l~~~lG~G~~g~Vy~a~~~~-------~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      -.+.|+.|....||++....       .+..+++|+.... .....+..|.++++.+.....     ..++++.+.    
T Consensus        77 ~v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~-~~~~~li~E~~~l~~L~~~g~-----~P~l~~~~~----  146 (429)
T 1nw1_A           77 RISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP-ETESHLVAESVIFTLLSERHL-----GPKLYGIFS----  146 (429)
T ss_dssp             EEEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC-CCHHHHHHHHHHHHHHHHTTS-----SSCEEEEET----
T ss_pred             EEEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC-CcHHHHHHHHHHHHHHHhCCC-----CCcEEEEeC----
Confidence            45678889999999997642       2578999988431 111345579999999975432     233444332    


Q ss_pred             CcceEEEEEecc
Q 013220          113 NGQHLCMVLEFL  124 (447)
Q Consensus       113 ~~~~~~lvmE~~  124 (447)
                      +    .+||||+
T Consensus       147 ~----g~v~e~l  154 (429)
T 1nw1_A          147 G----GRLEEYI  154 (429)
T ss_dssp             T----EEEECCC
T ss_pred             C----CEEEEEe
Confidence            2    2889998

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=92.01  E-value=0.55  Score=45.35  Aligned_cols=73  Identities=11%  Similarity=0.123  Sum_probs=42.7

Q ss_pred             cccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc--CCCcceEEEEEe
Q 013220           45 GWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA--GPNGQHLCMVLE  122 (447)
Q Consensus        45 G~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~--~~~~~~~~lvmE  122 (447)
                      |.|....||+.... .+ .+++|+.....     ...|+++++.|.....   +.|.+.+......  ...+...+++|+
T Consensus        32 G~g~~N~vy~v~~~-~g-~~vLK~~~~~~-----~~~E~~~l~~L~~~g~---~~vp~pi~~~~G~~~~~~~g~~~~l~~  101 (339)
T 3i1a_A           32 GADTNAFAYQADSE-SK-SYFIKLKYGYH-----DEINLSIIRLLHDSGI---KEIIFPIHTLEAKLFQQLKHFKIIAYP  101 (339)
T ss_dssp             TSCSSCEEEEEECS-SC-EEEEEEEECSS-----CCHHHHHHHHHHHTTC---CSSCCCCCCTTSCSSEECSSEEEEEEE
T ss_pred             cCccccceEEEEeC-CC-CEEEEEecCcc-----chHHHHHHHHHHhcCC---cccccceecCCCCEEEEECCEEEEEEe
Confidence            44446899999753 34 89999876543     2568888888865422   2233333221100  001357899999


Q ss_pred             cc-ccc
Q 013220          123 FL-GDS  127 (447)
Q Consensus       123 ~~-~~~  127 (447)
                      |+ |..
T Consensus       102 ~i~G~~  107 (339)
T 3i1a_A          102 FIHAPN  107 (339)
T ss_dssp             CCCCCB
T ss_pred             ccCCCc
Confidence            99 543

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=83.77  E-value=3.1  Score=41.00  Aligned_cols=34  Identities=9%  Similarity=0.082  Sum_probs=23.0

Q ss_pred             CceEEEEeecccCceEEEEEEeCC-------CCeEEEEEEec
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTR-------TSSYVALKIQK   70 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~-------~~~~vaiK~~~   70 (447)
                      ++.. +++|..|-...+|++....       ....|++++.-
T Consensus        53 ~~l~-v~~lsGG~SN~~y~v~~~~~~~~~~~~~~~~llRi~g   93 (401)
T 3g15_A           53 DEFH-ISVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYG   93 (401)
T ss_dssp             GGCE-EEEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEE
T ss_pred             CCEE-EEEeCCccccceEEEEECCCCcccccCCCeEEEEeCC
Confidence            4555 4566668889999997543       23568888753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	447
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	1e-52
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	8e-27
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	8e-15
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	9e-27
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	1e-16
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	2e-25
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	4e-25
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	7e-25
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	2e-17
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	1e-24
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	2e-16
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	4e-24
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	3e-14
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	7e-24
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	1e-20
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	2e-23
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	4e-17
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	2e-23
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	5e-14
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	4e-23
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	6e-14
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	5e-23
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	4e-13
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	7e-23
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	1e-16
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	1e-22
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	1e-17
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	1e-22
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	7e-09
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	2e-22
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	2e-14
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	5e-22
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	7e-10
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	7e-22
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	2e-20
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	9e-22
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	2e-18
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	9e-22
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	1e-19
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	1e-21
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	2e-19
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	2e-21
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	1e-10
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	2e-21
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	2e-09
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	3e-21
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	1e-12
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	1e-20
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	1e-05
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	2e-20
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	4e-20
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	2e-20
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	1e-16
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	3e-20
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	9e-17
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	4e-20
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	1e-18
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	9e-20
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	1e-12
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	1e-19
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	1e-19
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	1e-19
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	2e-16
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-19
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	4e-18
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	2e-19
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	1e-13
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	3e-19
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	1e-06
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	3e-19
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	4e-07
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	4e-19
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	3e-14
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	2e-18
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	2e-12
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	2e-18
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	9e-10
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	5e-18
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	1e-09
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	6e-18
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	3e-14
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	6e-18
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	5e-09
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	7e-18
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	3e-12
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	8e-18
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	1e-05
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	2e-17
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	4e-17
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	9e-08
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	5e-17
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	1e-15
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	1e-16
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	2e-05
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	2e-16
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	3e-07
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	3e-16
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	1e-09
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	4e-16
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	1e-06
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	5e-15
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	4e-07
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	6e-15
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	7e-06
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	1e-14
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	8e-07
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	3e-14
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	3e-11
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-13
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	3e-08
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	5e-13
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	7e-09
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	6e-13
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	7e-05
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	1e-12
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	4e-08
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	2e-12
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	1e-06
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	4e-12
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	3e-06
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	8e-12
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	3e-11
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	3e-07

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  178 bits (452), Expect = 1e-52
 Identities = 109/392 (27%), Positives = 173/392 (44%), Gaps = 61/392 (15%)

Query: 24  YHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEI 83
           YH    G+ +   RYI  RKLGWG FS VWLA D   +++VA+KI +    + +AA  E 
Sbjct: 1   YHPAFKGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDE- 59

Query: 84  EVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELN 143
                            I+L+        +      +       LL    +    G+ + 
Sbjct: 60  -----------------IKLLQRVND--ADNTKEDSMGANHILKLLDHFNHKGPNGVHVV 100

Query: 144 KVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSI 203
            V E+    L  L   +   G                       ++     +L   +   
Sbjct: 101 MVFEVLGENLLALIKKYEHRG------------------IPLIYVKQISKQLLLGLDYMH 142

Query: 204 NGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA 263
                    I+   +K        N+ +                     ++ K+ D GNA
Sbjct: 143 RRCG-----IIHTDIKP------ENVLMEIVDS------------PENLIQIKIADLGNA 179

Query: 264 CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCE 323
           C  ++ +   IQTR+YR+PEV+L A +    D+WS AC  FEL TGD LF P  G  + +
Sbjct: 180 CWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTK 239

Query: 324 DEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSET 383
           D+DH+A ++EL+G++P  +   G  ++ +F+  G L+ I +LKFW L+ +L +KY+FS+ 
Sbjct: 240 DDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKD 299

Query: 384 DAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
           +A+E ++FL P+L   P KR  A   + HPWL
Sbjct: 300 EAKEISDFLSPMLQLDPRKRADAGGLVNHPWL 331

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (269), Expect = 8e-27
 Identities = 37/155 (23%), Positives = 65/155 (41%), Gaps = 11/155 (7%)

Query: 31  DLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVA 90
           +       +  + LG G    V   ++ RT    ALK+ +   +       E+E+     
Sbjct: 7   NAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKA----RREVELHWRA- 61

Query: 91  DGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREIC 149
               S    ++R++D +++     + L +V+E L G  L   I+    +     +  EI 
Sbjct: 62  ----SQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIM 117

Query: 150 KYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS 184
           K I   + YLH  + I H D+KPEN+L  S    +
Sbjct: 118 KSIGEAIQYLH-SINIAHRDVKPENLLYTSKRPNA 151

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (178), Expect = 8e-15
 Identities = 39/178 (21%), Positives = 58/178 (32%), Gaps = 45/178 (25%)

Query: 243 KPERCL---DGIDMRCKVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 297
           KPE  L      +   K+ DFG A     +        T  Y APEV+    Y  S DMW
Sbjct: 138 KPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMW 197

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S     + L  G   F    G             + +   M  +I               
Sbjct: 198 SLGVIMYILLCGYPPFYSNHG-------------LAISPGMKTRI--------------- 229

Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
              R+ + +F + +   V +         E    +  LL   P +R T  + + HPW+
Sbjct: 230 ---RMGQYEFPNPEWSEVSE---------EVKMLIRNLLKTEPTQRMTITEFMNHPWI 275

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (267), Expect = 9e-27
 Identities = 37/144 (25%), Positives = 69/144 (47%), Gaps = 12/144 (8%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGDPS 95
            +    +LG G F  V+ A +  TS   A K I   + +  +  + EI++L++       
Sbjct: 13  FWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASC------ 66

Query: 96  NEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTG 155
           +   +++L+D F +      +L +++EF     +  +     + L  ++++ +CK  L  
Sbjct: 67  DHPNIVKLLDAFYYEN----NLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDA 122

Query: 156 LDYLHRELGIIHTDLKPENILLVS 179
           L+YLH +  IIH DLK  NIL   
Sbjct: 123 LNYLH-DNKIIHRDLKAGNILFTL 145

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.7 bits (191), Expect = 1e-16
 Identities = 33/182 (18%), Positives = 62/182 (34%), Gaps = 53/182 (29%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAE---EIQTRQYRAPEVIL-----RAGYSFSV 294
           K    L  +D   K+ DFG + +  +        I T  + APEV++        Y +  
Sbjct: 137 KAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKA 196

Query: 295 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 354
           D+WS   T  E+A  +             + + + +++++                    
Sbjct: 197 DVWSLGITLIEMAEIEPPH---------HELNPMRVLLKIA------------------- 228

Query: 355 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
              +   + +   WS                  F +FL   L+   + R T  Q LQHP+
Sbjct: 229 -KSEPPTLAQPSRWS----------------SNFKDFLKKCLEKNVDARWTTSQLLQHPF 271

Query: 415 LS 416
           ++
Sbjct: 272 VT 273

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (259), Expect = 2e-25
 Identities = 39/196 (19%), Positives = 66/196 (33%), Gaps = 18/196 (9%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFA-EEIQTRQYRAPEVILRAGYSFSVDMWSFAC 301
           KP   L       K+ DFG + +     A   + TR Y +PE +    YS   D+WS   
Sbjct: 132 KPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGL 191

Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
           +  E+A G     P         E  L    ++ G             +       D + 
Sbjct: 192 SLVEMAVGRYPIPPPD-----AKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRP 246

Query: 362 IRRLKFWSLDRLLVDKYRF-SETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS 420
              +       +     +  S   + EF +F+   L   P +R   +Q + H ++     
Sbjct: 247 PMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIK---- 302

Query: 421 TRDETKNKSNVEKVDV 436
                  +S+ E+VD 
Sbjct: 303 -------RSDAEEVDF 311

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 4e-25
 Identities = 30/147 (20%), Positives = 61/147 (41%), Gaps = 15/147 (10%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI--QKSAAQFAQAALHEIEVLSAVADGDP 94
            +    +LG G   +V+      +   +A K+   +         + E++VL        
Sbjct: 7   DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHEC----- 61

Query: 95  SNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYIL 153
            N   ++     F   G     + + +E + G SL +++K  +   +    + ++   ++
Sbjct: 62  -NSPYIVGFYGAFYSDG----EISICMEHMDGGSLDQVLK--KAGRIPEQILGKVSIAVI 114

Query: 154 TGLDYLHRELGIIHTDLKPENILLVST 180
            GL YL  +  I+H D+KP NIL+ S 
Sbjct: 115 KGLTYLREKHKIMHRDVKPSNILVNSR 141

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 7e-25
 Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 13/156 (8%)

Query: 29  VGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI---QKSAAQFAQAALHEIEV 85
           VG   +G       ++G G F  V+   DT T+  VA      +K      Q    E E+
Sbjct: 2   VGMSNDGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEM 61

Query: 86  LSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNK 144
           L  +          ++R  D ++      + + +V E +   +L   +K  R+K +++  
Sbjct: 62  LKGL------QHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLK--RFKVMKIKV 113

Query: 145 VREICKYILTGLDYLHRE-LGIIHTDLKPENILLVS 179
           +R  C+ IL GL +LH     IIH DLK +NI +  
Sbjct: 114 LRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITG 149

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.0 bits (197), Expect = 2e-17
 Identities = 27/175 (15%), Positives = 53/175 (30%), Gaps = 48/175 (27%)

Query: 243 KPERCL-DGIDMRCKVVDFGNACRANKQFAEEIQ-TRQYRAPEVILRAGYSFSVDMWSFA 300
           K +     G     K+ D G A      FA+ +  T ++ APE+     Y  SVD+++F 
Sbjct: 141 KCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEM-YEEKYDESVDVYAFG 199

Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
               E+AT +  +          +  + A +   +    +                    
Sbjct: 200 MCMLEMATSEYPY---------SECQNAAQIYRRVTSGVKPA------------------ 232

Query: 361 RIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
                              F +    E  E +   +    ++R + +  L H + 
Sbjct: 233 ------------------SFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFF 269

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  102 bits (254), Expect = 1e-24
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 14/145 (9%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGDPS 95
            Y    +LG G F +V    +  T +  A K +        +    EI+ +S +      
Sbjct: 27  HYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVL------ 80

Query: 96  NEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILT 154
               ++ L D F+        + M+ EF+ G  L   +    +  +  ++  E  + +  
Sbjct: 81  RHPTLVNLHDAFED----DNEMVMIYEFMSGGELFEKV-ADEHNKMSEDEAVEYMRQVCK 135

Query: 155 GLDYLHRELGIIHTDLKPENILLVS 179
           GL ++H E   +H DLKPENI+  +
Sbjct: 136 GLCHMH-ENNYVHLDLKPENIMFTT 159

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 78.2 bits (192), Expect = 2e-16
 Identities = 36/188 (19%), Positives = 61/188 (32%), Gaps = 48/188 (25%)

Query: 243 KPERCL--DGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 298
           KPE  +         K++DFG     +  +       T ++ APEV       +  DMWS
Sbjct: 151 KPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWS 210

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
               ++ L +G   F  ++      D++ L  +      M                    
Sbjct: 211 VGVLSYILLSGLSPFGGEN------DDETLRNVKSCDWNMDDSA---------------- 248

Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 418
                     S                 +  +F+  LL   P  R T  Q L+HPWL+  
Sbjct: 249 ------FSGIS----------------EDGKDFIRKLLLADPNTRMTIHQALEHPWLTPG 286

Query: 419 NSTRDETK 426
           N+   +++
Sbjct: 287 NAPGRDSQ 294

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score =  100 bits (250), Expect = 4e-24
 Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 18/180 (10%)

Query: 9   SEDDDEGIDSYRKGGYHAVRV--GDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVAL 66
           ++ D    D ++K     V V  G +++   Y    +LG G F +V    +  T      
Sbjct: 2   NDYDKFYEDIWKKYVPQPVEVKQGSVYD--YYDILEELGSGAFGVVHRCVEKATGRVFVA 59

Query: 67  K-IQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL- 124
           K I            +EI +++ +      +   +I L D F+        + ++LEFL 
Sbjct: 60  KFINTPYPLDKYTVKNEISIMNQL------HHPKLINLHDAFED----KYEMVLILEFLS 109

Query: 125 GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS 184
           G  L   I  +    +   +V    +    GL ++H E  I+H D+KPENI+  +    S
Sbjct: 110 GGELFDRIA-AEDYKMSEAEVINYMRQACEGLKHMH-EHSIVHLDIKPENIMCETKKASS 167

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 71.6 bits (175), Expect = 3e-14
 Identities = 38/185 (20%), Positives = 57/185 (30%), Gaps = 46/185 (24%)

Query: 252 DMRCKVVDFGNACRANKQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATG 309
               K++DFG A + N          T ++ APE++ R    F  DMW+     + L +G
Sbjct: 165 ASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSG 224

Query: 310 DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWS 369
              FA +       D + L  +     +                               S
Sbjct: 225 LSPFAGED------DLETLQNVKRCDWEFDEDA----------------------FSSVS 256

Query: 370 LDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKS 429
                            E  +F+  LL   P KR T    L+HPWL   +S        S
Sbjct: 257 ----------------PEAKDFIKNLLQKEPRKRLTVHDALEHPWLKGDHSNLTSRIPSS 300

Query: 430 NVEKV 434
              K+
Sbjct: 301 RYNKI 305

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.2 bits (246), Expect = 7e-24
 Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 9/148 (6%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSS-YVALKI---QKSAAQFAQAALHEIEVLSAVADG 92
           +Y    ++G G +  V+ A D +    +VALK    Q        + + E+ VL  +   
Sbjct: 8   QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETF 67

Query: 93  DPSNEKCVIRLIDHFKHAGPNGQ-HLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKY 151
           +  N   V+RL D    +  + +  L +V E +   L   +      G+    ++++   
Sbjct: 68  EHPN---VVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQ 124

Query: 152 ILTGLDYLHRELGIIHTDLKPENILLVS 179
           +L GLD+LH    ++H DLKP+NIL+ S
Sbjct: 125 LLRGLDFLH-SHRVVHRDLKPQNILVTS 151

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.9 bits (222), Expect = 1e-20
 Identities = 42/175 (24%), Positives = 63/175 (36%), Gaps = 23/175 (13%)

Query: 243 KPERCLDGIDMRCKVVDFG--NACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP+  L     + K+ DFG              + T  YRAPEV+L++ Y+  VD+WS  
Sbjct: 143 KPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVG 202

Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
           C   E+     LF   S      D D L  ++++IG    +                  +
Sbjct: 203 CIFAEMFRRKPLFRGSS------DVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQ 256

Query: 361 RIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
            I                +F         + L+  L F P KR +A   L HP+ 
Sbjct: 257 PIE---------------KFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYF 296

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.8 bits (245), Expect = 2e-23
 Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 14/152 (9%)

Query: 30  GDLFN-GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI--QKSAAQFAQAALHEIEVL 86
           G +F+ G RY     +G G + +V  AYD      VA+K         + Q  L EI++L
Sbjct: 1   GQVFDVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKIL 60

Query: 87  SAVADGDPSNEKCVIRLIDHFKHAG-PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKV 145
                      + +I + D  +       + + +V   +G  L +L+K    + L  + +
Sbjct: 61  LRF------RHENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLK---TQHLSNDHI 111

Query: 146 REICKYILTGLDYLHRELGIIHTDLKPENILL 177
                 IL GL Y+H    ++H DLKP N+LL
Sbjct: 112 CYFLYQILRGLKYIH-SANVLHRDLKPSNLLL 142

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.3 bits (197), Expect = 4e-17
 Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 24/180 (13%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANK------QFAEEIQTRQYRAPEVILR-AGYSFSVD 295
           KP   L       K+ DFG A  A+          E + TR YRAPE++L   GY+ S+D
Sbjct: 136 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 195

Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WS  C   E+ +   +F  K         D L  ++ ++G             ++  + 
Sbjct: 196 IWSVGCILAEMLSNRPIFPGKH------YLDQLNHILGILGSPS----------QEDLNC 239

Query: 356 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
             +LK    L        +     F   D+ +  + L  +L F P KR   +Q L HP+L
Sbjct: 240 IINLKARNYLLSLPHKNKVPWNRLFPNADS-KALDLLDKMLTFNPHKRIEVEQALAHPYL 298

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 97.4 bits (242), Expect = 2e-23
 Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 23/152 (15%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI----------QKSAAQFAQAALHEIEVL 86
            Y  +  LG G  S+V       T    A+KI           +   +  +A L E+++L
Sbjct: 4   NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL 63

Query: 87  SAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKV 145
             V     S    +I+L D ++          +V + +    L   +       L   + 
Sbjct: 64  RKV-----SGHPNIIQLKDTYET----NTFFFLVFDLMKKGELFDYLT--EKVTLSEKET 112

Query: 146 REICKYILTGLDYLHRELGIIHTDLKPENILL 177
           R+I + +L  +  LH +L I+H DLKPENILL
Sbjct: 113 RKIMRALLEVICALH-KLNIVHRDLKPENILL 143

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 69.7 bits (170), Expect = 5e-14
 Identities = 41/181 (22%), Positives = 59/181 (32%), Gaps = 52/181 (28%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVIL------RAGYSFSV 294
           KPE  L   DM  K+ DFG +C+ +  ++  E   T  Y APE+I         GY   V
Sbjct: 137 KPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEV 196

Query: 295 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 354
           DMWS     + L  G   F                LM+ +I     +             
Sbjct: 197 DMWSTGVIMYTLLAGSPPF----------WHRKQMLMLRMIMSGNYQF------------ 234

Query: 355 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
                        +S                    + +   L   P+KR TA++ L HP+
Sbjct: 235 ------GSPEWDDYS----------------DTVKDLVSRFLVVQPQKRYTAEEALAHPF 272

Query: 415 L 415
            
Sbjct: 273 F 273

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 97.0 bits (241), Expect = 4e-23
 Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 16/145 (11%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI----QKSAAQFAQAALHEIEVLSAVADG 92
            +   R++G G F  V+ A D R S  VA+K      K + +  Q  + E+  L  +   
Sbjct: 16  LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKL--- 72

Query: 93  DPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYI 152
                   I+    +           +V+E+   S   L++  + K L+  ++  +    
Sbjct: 73  ---RHPNTIQYRGCYLR----EHTAWLVMEYCLGSASDLLEVHK-KPLQEVEIAAVTHGA 124

Query: 153 LTGLDYLHRELGIIHTDLKPENILL 177
           L GL YLH    +IH D+K  NILL
Sbjct: 125 LQGLAYLH-SHNMIHRDVKAGNILL 148

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.0 bits (171), Expect = 6e-14
 Identities = 35/205 (17%), Positives = 59/205 (28%), Gaps = 50/205 (24%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVIL---RAGYSFSVDMWSF 299
           K    L       K+ DFG+A          + T  + APEVIL      Y   VD+WS 
Sbjct: 142 KAGNILLSEPGLVKLGDFGSASIMAPAN-SFVGTPYWMAPEVILAMDEGQYDGKVDVWSL 200

Query: 300 ACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDL 359
             T  ELA                + + ++ +  +       +                 
Sbjct: 201 GITCIELAERKPPL---------FNMNAMSALYHIAQNESPAL----------------- 234

Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN 419
                               +SE     F  F+   L   P+ RPT++  L+H ++    
Sbjct: 235 ----------------QSGHWSE----YFRNFVDSCLQKIPQDRPTSEVLLKHRFVLRER 274

Query: 420 STRDETKNKSNVEKVDVGMSKLEIK 444
                       +     +  L+ +
Sbjct: 275 PPTVIMDLIQRTKDAVRELDNLQYR 299

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.0 bits (241), Expect = 5e-23
 Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 13/142 (9%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN 96
           +Y+    LG G+F IV    +T +      K  K           EI +L+         
Sbjct: 6   KYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIA------R 59

Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTG 155
            + ++ L + F+      + L M+ EF+ G  +   I  S ++ L   ++      +   
Sbjct: 60  HRNILHLHESFES----MEELVMIFEFISGLDIFERINTSAFE-LNEREIVSYVHQVCEA 114

Query: 156 LDYLHRELGIIHTDLKPENILL 177
           L +LH    I H D++PENI+ 
Sbjct: 115 LQFLH-SHNIGHFDIRPENIIY 135

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.8 bits (165), Expect = 4e-13
 Identities = 34/166 (20%), Positives = 53/166 (31%), Gaps = 46/166 (27%)

Query: 252 DMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATG 309
               K+++FG A   +    F       +Y APEV      S + DMWS     + L +G
Sbjct: 140 SSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSG 199

Query: 310 DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWS 369
              F  ++      ++  +  +M        +                        K  S
Sbjct: 200 INPFLAET------NQQIIENIMNAEYTFDEEA----------------------FKEIS 231

Query: 370 LDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
                            E  +F+  LL    + R TA + LQHPWL
Sbjct: 232 ----------------IEAMDFVDRLLVKERKSRMTASEALQHPWL 261

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.8 bits (238), Expect = 7e-23
 Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 16/144 (11%)

Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALK-IQKSAAQFAQAALHEIEVLSAVADGDP 94
            +Y    K+G G    V+ A D  T   VA++ +        +  ++EI V+        
Sbjct: 20  KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMREN----- 74

Query: 95  SNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYIL 153
                ++  +D +      G  L +V+E+L G SL  ++  +        ++  +C+  L
Sbjct: 75  -KNPNIVNYLDSYLV----GDELWVVMEYLAGGSLTDVVTETCMD---EGQIAAVCRECL 126

Query: 154 TGLDYLHRELGIIHTDLKPENILL 177
             L++LH    +IH D+K +NILL
Sbjct: 127 QALEFLH-SNQVIHRDIKSDNILL 149

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (192), Expect = 1e-16
 Identities = 40/186 (21%), Positives = 65/186 (34%), Gaps = 48/186 (25%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRA---NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSF 299
           K +  L G+D   K+ DFG   +      + +  + T  + APEV+ R  Y   VD+WS 
Sbjct: 143 KSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSL 202

Query: 300 ACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDL 359
              A E+  G+  +          +E+ L  +  +                         
Sbjct: 203 GIMAIEMIEGEPPY---------LNENPLRALYLIA-----------------------T 230

Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN 419
                L+            + S      F +FL   LD   EKR +A++ LQH +L +  
Sbjct: 231 NGTPELQNPE---------KLSA----IFRDFLNRCLDMDVEKRGSAKELLQHQFLKIAK 277

Query: 420 STRDET 425
                T
Sbjct: 278 PLSSLT 283

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.3 bits (236), Expect = 1e-22
 Identities = 44/178 (24%), Positives = 61/178 (34%), Gaps = 24/178 (13%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRAN---KQFAEEIQTRQYRAPEVILRA-GYSFSVDMWS 298
           KP   L   +   K+ DFG A       + +  ++ TR YRAPE++  A  Y   VDMW+
Sbjct: 127 KPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWA 186

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
             C   EL          S      D D L  + E +G    +         DY      
Sbjct: 187 VGCILAELLLRVPFLPGDS------DLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSF 240

Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
                   F +    L+D               +  L  F P  R TA Q L+  + S
Sbjct: 241 PGIPLHHIFSAAGDDLLD--------------LIQGLFLFNPCARITATQALKMKYFS 284

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.7 bits (198), Expect = 1e-17
 Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 18/142 (12%)

Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKI------QKSAAQFAQAALHEIEVLSAVADGDPS 95
             LG GQF+ V+ A D  T+  VA+K        ++     + AL EI++L  +      
Sbjct: 4   DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQEL------ 57

Query: 96  NEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTG 155
           +   +I L+D F H      ++ +V +F+   L  +I       L  + ++      L G
Sbjct: 58  SHPNIIGLLDAFGH----KSNISLVFDFMETDLEVII-KDNSLVLTPSHIKAYMLMTLQG 112

Query: 156 LDYLHRELGIIHTDLKPENILL 177
           L+YLH+   I+H DLKP N+LL
Sbjct: 113 LEYLHQH-WILHRDLKPNNLLL 133

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 94.8 bits (235), Expect = 1e-22
 Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 14/148 (9%)

Query: 35  GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA----AQFAQAALHEIEVLSAVA 90
             RY     LG+G  S V LA D R    VA+K+ ++       F      E +  +A+ 
Sbjct: 6   SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAAL- 64

Query: 91  DGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREIC 149
                N   ++ + D  +   P G    +V+E++ G +L  ++       +   +  E+ 
Sbjct: 65  -----NHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVH--TEGPMTPKRAIEVI 117

Query: 150 KYILTGLDYLHRELGIIHTDLKPENILL 177
                 L++ H + GIIH D+KP NI++
Sbjct: 118 ADACQALNFSH-QNGIIHRDVKPANIMI 144

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 54.4 bits (130), Expect = 7e-09
 Identities = 28/183 (15%), Positives = 51/183 (27%), Gaps = 50/183 (27%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ------TRQYRAPEVILRAGYSFSVDM 296
           KP   +       KV+DFG A           Q      T QY +PE           D+
Sbjct: 138 KPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDV 197

Query: 297 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 356
           +S  C  +E+ TG+  F           +  +++  + + + P                 
Sbjct: 198 YSLGCVLYEVLTGEPPF---------TGDSPVSVAYQHVREDPI---------------- 232

Query: 357 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
                       S     +           +    ++  L   PE R      ++   + 
Sbjct: 233 ----------PPSARHEGLSA---------DLDAVVLKALAKNPENRYQTAAEMRADLVR 273

Query: 417 LRN 419
           + N
Sbjct: 274 VHN 276

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.9 bits (233), Expect = 2e-22
 Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 16/147 (10%)

Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI--QKSAAQFAQAALHEIEVLSAVADGD 93
             +   + LG G +  V LA +  T   VA+KI   K A    +    EI +   +    
Sbjct: 5   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKML---- 60

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYI 152
             N + V++   H +     G    + LE+  G  L   I+     G+     +     +
Sbjct: 61  --NHENVVKFYGHRRE----GNIQYLFLEYCSGGELFDRIE--PDIGMPEPDAQRFFHQL 112

Query: 153 LTGLDYLHRELGIIHTDLKPENILLVS 179
           + G+ YLH  +GI H D+KPEN+LL  
Sbjct: 113 MAGVVYLH-GIGITHRDIKPENLLLDE 138

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (173), Expect = 2e-14
 Identities = 30/180 (16%), Positives = 48/180 (26%), Gaps = 51/180 (28%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRA-----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDM 296
           KPE  L       K+ DFG A         +   +   T  Y APE++ R  + +  VD+
Sbjct: 130 KPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDV 189

Query: 297 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 356
           WS       +  G++         + +  D      +   K                   
Sbjct: 190 WSCGIVLTAMLAGEL--------PWDQPSDSCQEYSDWKEKKT----------------- 224

Query: 357 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
                   L  W          +            L  +L   P  R T     +  W +
Sbjct: 225 -------YLNPWK---------KIDS----APLALLHKILVENPSARITIPDIKKDRWYN 264

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 93.8 bits (232), Expect = 5e-22
 Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 12/142 (8%)

Query: 35  GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDP 94
           G RY   RK+G G F  ++L  D      VA+K++    +  Q    E ++   +     
Sbjct: 6   GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQ-LHIESKIYKMM----- 59

Query: 95  SNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILT 154
                 I  I      G  G +  MV+E LG SL  L  +   +   L  V  +   +++
Sbjct: 60  -QGGVGIPTIRWC---GAEGDYNVMVMELLGPSLEDLFNFCS-RKFSLKTVLLLADQMIS 114

Query: 155 GLDYLHRELGIIHTDLKPENIL 176
            ++Y+H     IH D+KP+N L
Sbjct: 115 RIEYIH-SKNFIHRDVKPDNFL 135

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.5 bits (138), Expect = 7e-10
 Identities = 19/184 (10%), Positives = 41/184 (22%), Gaps = 53/184 (28%)

Query: 247 CLDGIDMRCKVVDFGNACRAN----------KQFAEEIQTRQYRAPEVILRAGYSFSVDM 296
            L        ++DFG A +            ++      T +Y +    L    S   D+
Sbjct: 137 GLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDL 196

Query: 297 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 356
            S          G                                           +   
Sbjct: 197 ESLGYVLMYFNLG----------------------------------------SLPWQGL 216

Query: 357 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQ---QCLQHP 413
               + ++ +  S  ++        +    EFA +L        + +P      Q  ++ 
Sbjct: 217 KAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNL 276

Query: 414 WLSL 417
           +   
Sbjct: 277 FHRQ 280

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.1 bits (233), Expect = 7e-22
 Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 17/164 (10%)

Query: 21  KGGYHAVRVGDLFNG--GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI---QKSAAQF 75
           + G++   V          Y   + +G G +  V  A D RT + VA+K       +  F
Sbjct: 1   RSGFYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELF 60

Query: 76  AQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP--NGQHLCMVLEFLGDSLLRLIK 133
           A+ A  E+ +L  +        + VI L+D F       +     +V+ F+G  L +L+K
Sbjct: 61  AKRAYRELRLLKHM------RHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMK 114

Query: 134 YSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
           + +   L  ++++ +   +L GL Y+H   GIIH DLKP N+ +
Sbjct: 115 HEK---LGEDRIQFLVYQMLKGLRYIH-AAGIIHRDLKPGNLAV 154

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.3 bits (223), Expect = 2e-20
 Identities = 53/204 (25%), Positives = 81/204 (39%), Gaps = 19/204 (9%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWSFAC 301
           KP       D   K++DFG A +A+ +    + TR YRAPEVIL    Y+ +VD+WS  C
Sbjct: 148 KPGNLAVNEDCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGC 207

Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
              E+ TG  LF            D L  +M++ G  P +        +      G  + 
Sbjct: 208 IMAEMITGKTLFKGSD------HLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPEL 261

Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL-SLRNS 420
            ++           D        +      L  +L    E+R TA + L HP+  SL ++
Sbjct: 262 EKK-----------DFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLHDT 310

Query: 421 TRDETKNKSNVEKVDVGMSKLEIK 444
             +    K +    DV  +  E K
Sbjct: 311 EDEPQVQKYDDSFDDVDRTLDEWK 334

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.7 bits (232), Expect = 9e-22
 Identities = 34/153 (22%), Positives = 70/153 (45%), Gaps = 14/153 (9%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN 96
            Y   + +G G F +V+ A    +   VA+K      +F      E++++  +      +
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKN---RELQIMRKL------D 71

Query: 97  EKCVIRLIDHFKHAG--PNGQHLCMVLEFLGDSLLRLIKY--SRYKGLELNKVREICKYI 152
              ++RL   F  +G   +  +L +VL+++ +++ R+ ++     + L +  V+     +
Sbjct: 72  HCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQL 131

Query: 153 LTGLDYLHRELGIIHTDLKPENILLVSTIDPSK 185
              L Y+H   GI H D+KP+N+LL       K
Sbjct: 132 FRSLAYIH-SFGICHRDIKPQNLLLDPDTAVLK 163

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.1 bits (207), Expect = 2e-18
 Identities = 45/178 (25%), Positives = 66/178 (37%), Gaps = 23/178 (12%)

Query: 243 KPER-CLDGIDMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWS 298
           KP+   LD      K+ DFG+A      +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 149 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWS 208

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
             C   EL  G  +F   S        D L  +++++G   R+                 
Sbjct: 209 AGCVLAELLLGQPIFPGDS------GVDQLVEIIKVLGTPTRE------------QIREM 250

Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
                  KF  +      K     T   E       LL++TP  R T  +   H +  
Sbjct: 251 NPNYTEFKFPQIKAHPWTKVFRPRTPP-EAIALCSRLLEYTPTARLTPLEACAHSFFD 307

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.0 bits (228), Expect = 9e-22
 Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 18/148 (12%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA----AQFAQAALHEIEVLSAVADG 92
            +   R LG G+F  V+LA + ++   +ALK+   A    A        E+E+ S +   
Sbjct: 7   DFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL--- 63

Query: 93  DPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKY 151
                  ++RL  +F  A      + ++LE+    ++ R ++  +    +  +       
Sbjct: 64  ---RHPNILRLYGYFHDAT----RVYLILEYAPLGTVYRELQ--KLSKFDEQRTATYITE 114

Query: 152 ILTGLDYLHRELGIIHTDLKPENILLVS 179
           +   L Y H    +IH D+KPEN+LL S
Sbjct: 115 LANALSYCH-SKRVIHRDIKPENLLLGS 141

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.8 bits (212), Expect = 1e-19
 Identities = 38/179 (21%), Positives = 60/179 (33%), Gaps = 49/179 (27%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRA-NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFAC 301
           KPE  L G     K+ DFG +  A + +      T  Y  PE+I    +   VD+WS   
Sbjct: 133 KPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 192

Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
             +E   G   F   +               E                          KR
Sbjct: 193 LCYEFLVGKPPFEANT-------------YQET------------------------YKR 215

Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS 420
           I R+           ++ F +       + +  LL   P +RP  ++ L+HPW++  +S
Sbjct: 216 ISRV-----------EFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSS 263

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.9 bits (232), Expect = 1e-21
 Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 8/176 (4%)

Query: 243 KPERCLDGIDMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
           KP   +   D   K++DFG A     +      + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 146 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 205

Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
           C   E+    +LF  +         D    ++E +G    +       +   +  +    
Sbjct: 206 CIMGEMVRHKILFPGRD------YIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 259

Query: 361 RIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
                     D L       ++  A +  + L  +L   P KR +    LQHP+++
Sbjct: 260 AGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYIN 315

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.3 bits (215), Expect = 2e-19
 Identities = 80/372 (21%), Positives = 137/372 (36%), Gaps = 35/372 (9%)

Query: 24  YHAVRVGDLFNG--GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ---FAQA 78
           +++V VGD       RY   + +G G   IV  AYD      VA+K      Q    A+ 
Sbjct: 3   FYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKR 62

Query: 79  ALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP--NGQHLCMVLEFLGDSLLRLIKYSR 136
           A  E+ ++  V      N K +I L++ F         Q + +V+E +  +L ++I+   
Sbjct: 63  AYRELVLMKCV------NHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQ--- 113

Query: 137 YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL 196
              L+  ++  +   +L G+ +LH   GIIH DLKP NI++ S  D +   +  GL    
Sbjct: 114 -MELDHERMSYLLYQMLCGIKHLHSA-GIIHRDLKPSNIVVKS--DCTLKILDFGLARTA 169

Query: 197 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCK 256
                      T      E  L    K  V   S+       +         D ID   K
Sbjct: 170 GTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNK 229

Query: 257 VVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPK 316
           V+             E++ T      + +     ++  +   +A   F     D LF   
Sbjct: 230 VI-------------EQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPAD 276

Query: 317 SGQGFCEDEDHLALMMELIGKMPRK-IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLV 375
           S     +      L+ +++   P K I++  A    Y +   D   +        D+ L 
Sbjct: 277 SEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDPAEVEAPPPQIYDKQL- 335

Query: 376 DKYRFSETDARE 387
           D+   +  + +E
Sbjct: 336 DEREHTIEEWKE 347

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 93.3 bits (231), Expect = 2e-21
 Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 15/146 (10%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI----QKSAAQFAQAALHEIEVLSAVADG 92
            +   R +G G F  V+      T    A+K     +    Q    AL+E  +LS V+ G
Sbjct: 5   DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG 64

Query: 93  DPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKY 151
           D      ++ +   F         L  +L+ + G  L   +   ++       +R     
Sbjct: 65  DCPF---IVCMSYAFHT----PDKLSFILDLMNGGDLHYHLS--QHGVFSEADMRFYAAE 115

Query: 152 ILTGLDYLHRELGIIHTDLKPENILL 177
           I+ GL+++H    +++ DLKP NILL
Sbjct: 116 IILGLEHMH-NRFVVYRDLKPANILL 140

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.1 bits (145), Expect = 1e-10
 Identities = 32/181 (17%), Positives = 50/181 (27%), Gaps = 52/181 (28%)

Query: 243 KPERCLDGIDMRCKVVDFGNACR-ANKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFA 300
           KP   L       ++ D G AC  + K+    + T  Y APEV+ +   Y  S D +S  
Sbjct: 134 KPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLG 193

Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
           C  F+L  G   F           +       E+                          
Sbjct: 194 CMLFKLLRGHSPF----------RQHKTKDKHEIDRMTLT-------------------- 223

Query: 361 RIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWL 415
                                ++ + E    L  LL     +R       AQ+  + P+ 
Sbjct: 224 ---------------MAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFF 268

Query: 416 S 416
            
Sbjct: 269 R 269

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 91.8 bits (227), Expect = 2e-21
 Identities = 32/183 (17%), Positives = 67/183 (36%), Gaps = 15/183 (8%)

Query: 35  GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDP 94
           G  Y   R++G G F +++   +   +  VA+K +   +  A     E      +     
Sbjct: 4   GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD-APQLRDEYRTYKLL----- 57

Query: 95  SNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILT 154
           +    +  +    +     G H  +V++ LG SL  L+     +   +  V    K +L 
Sbjct: 58  AGCTGIPNVYYFGQE----GLHNVLVIDLLGPSLEDLLD-LCGRKFSVKTVAMAAKQMLA 112

Query: 155 GLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR---SGLTPILERPEGSINGGSTSTM 211
            +  +H E  +++ D+KP+N L+      + + I     G+      P    +       
Sbjct: 113 RVQSIH-EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKK 171

Query: 212 TIV 214
            + 
Sbjct: 172 NLS 174

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 56.4 bits (135), Expect = 2e-09
 Identities = 21/146 (14%), Positives = 40/146 (27%), Gaps = 24/146 (16%)

Query: 243 KPERCLDGIDMRC-----KVVDFGNACRANKQFAEE----------IQTRQYRAPEVILR 287
           KP+  L G           VVDFG          ++            T +Y +    L 
Sbjct: 128 KPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLG 187

Query: 288 AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALM------MELIGKMPRK 341
              S   D+ +          G + +         +  + +          EL    P +
Sbjct: 188 REQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEE 247

Query: 342 IA--IGGAQSKDYFDRHGDLKRIRRL 365
               +  A++  +     D   ++ L
Sbjct: 248 FYKYMHYARNLAFDATP-DYDYLQGL 272

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.5 bits (224), Expect = 3e-21
 Identities = 33/149 (22%), Positives = 53/149 (35%), Gaps = 16/149 (10%)

Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI-------QKSAAQFAQAALHEIEVLSA 88
            +Y     LG G F  V+       +  VA+K                     E+ +L  
Sbjct: 4   SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKK 63

Query: 89  VADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREI 148
           V+ G       VIRL+D F+          ++LE            +    L+    R  
Sbjct: 64  VSSGFS----GVIRLLDWFER----PDSFVLILERPEPVQDLFDFITERGALQEELARSF 115

Query: 149 CKYILTGLDYLHRELGIIHTDLKPENILL 177
              +L  + + H   G++H D+K ENIL+
Sbjct: 116 FWQVLEAVRHCH-NCGVLHRDIKDENILI 143

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (159), Expect = 1e-12
 Identities = 28/170 (16%), Positives = 48/170 (28%), Gaps = 56/170 (32%)

Query: 248 LDGIDMRCKVVDFGNACRANKQFAEEIQ-TRQYRAPEVILRAGY-SFSVDMWSFACTAFE 305
           +D      K++DFG+          +   TR Y  PE I    Y   S  +WS     ++
Sbjct: 143 IDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYD 202

Query: 306 LATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRL 365
           +                             G +P                          
Sbjct: 203 MVC---------------------------GDIP-------------------------- 209

Query: 366 KFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
            F   + ++  +  F +  + E    +   L   P  RPT ++   HPW+
Sbjct: 210 -FEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWM 258

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (220), Expect = 1e-20
 Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 14/142 (9%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN 96
                 +LG GQF  VW+ Y     + VA+K  K  +    A L E  ++  +       
Sbjct: 14  TLKLVERLGAGQFGEVWMGYY-NGHTKVAVKSLKQGSMSPDAFLAEANLMKQL------Q 66

Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTG 155
            + ++RL           + + ++ E++   SL+  +K      L +NK+ ++   I  G
Sbjct: 67  HQRLVRLYAVVTQ-----EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEG 121

Query: 156 LDYLHRELGIIHTDLKPENILL 177
           + ++  E   IH DL+  NIL+
Sbjct: 122 MAFIE-ERNYIHRDLRAANILV 142

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 27/180 (15%), Positives = 49/180 (27%), Gaps = 52/180 (28%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWS 298
           +    L    + CK+ DFG A           +      ++ APE I    ++   D+WS
Sbjct: 136 RAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWS 195

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
           F     E+ T         G+       +  ++                          +
Sbjct: 196 FGILLTEIVTH--------GRIPYPGMTNPEVIQ-------------------------N 222

Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ--HPWLS 416
           L+R  R+                +    E  + +       PE RPT          + +
Sbjct: 223 LERGYRMVRP-------------DNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFT 269

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.2 bits (220), Expect = 2e-20
 Identities = 45/178 (25%), Positives = 66/178 (37%), Gaps = 23/178 (12%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRAN---KQFAEEIQTRQYRAPEVILRAGY-SFSVDMWS 298
           KP+  L   +   K+ DFG A       + +  E+ T  YRAPE++L   Y S +VD+WS
Sbjct: 129 KPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWS 188

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
             C   E+ T   LF   S      + D L  +   +G     +  G     DY      
Sbjct: 189 LGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPK 242

Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
             R    K                    +    L  +L + P KR +A+  L HP+  
Sbjct: 243 WARQDFSKVVP-------------PLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQ 287

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.0 bits (217), Expect = 4e-20
 Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 14/144 (9%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI---QKSAAQFAQAALHEIEVLSAVADGD 93
            +    K+G G + +V+ A +  T   VALK              A+ EI +L  +    
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKEL---- 58

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYIL 153
             N   +++L+D           L +V EFL   L + +  S   G+ L  ++     +L
Sbjct: 59  --NHPNIVKLLDVIHT----ENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLL 112

Query: 154 TGLDYLHRELGIIHTDLKPENILL 177
            GL + H    ++H DLKP+N+L+
Sbjct: 113 QGLAFCHSH-RVLHRDLKPQNLLI 135

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 88.8 bits (219), Expect = 2e-20
 Identities = 43/178 (24%), Positives = 69/178 (38%), Gaps = 23/178 (12%)

Query: 242 PKPERCLDGIDMRCKVVDFGNACRANK---QFAEEIQTRQYRAPEVILRAG-YSFSVDMW 297
            KP+  L   +   K+ DFG A        ++  EI T  YRAP+V++ +  YS ++D+W
Sbjct: 126 LKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIW 185

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S  C   E+  G  LF   S      + D L  +  ++G    K      +   Y     
Sbjct: 186 SVGCIFAEMVNGTPLFPGVS------EADQLMRIFRILGTPNSKNWPNVTELPKYDPNFT 239

Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
             + +    F              E       + L  +L   P +R TA+Q L+H + 
Sbjct: 240 VYEPLPWESFLK---------GLDE----SGIDLLSKMLKLDPNQRITAKQALEHAYF 284

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 78.0 bits (191), Expect = 1e-16
 Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 16/144 (11%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI---QKSAAQFAQAALHEIEVLSAVADGD 93
           +Y    K+G G + +V+ A +       ALK    +K         + EI +L  +    
Sbjct: 3   KYHGLEKIGEGTYGVVYKAQN-NYGETFALKKIRLEKEDEGIPSTTIREISILKEL---- 57

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYIL 153
                 +++L D         + L +V E L   L +L+      GLE    +     +L
Sbjct: 58  --KHSNIVKLYDVIHT----KKRLVLVFEHLDQDLKKLLDVCE-GGLESVTAKSFLLQLL 110

Query: 154 TGLDYLHRELGIIHTDLKPENILL 177
            G+ Y H +  ++H DLKP+N+L+
Sbjct: 111 NGIAYCH-DRRVLHRDLKPQNLLI 133

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.2 bits (220), Expect = 3e-20
 Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 18/183 (9%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWSFAC 301
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 148 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 207

Query: 302 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 361
              EL TG  LF            D L L++ L+G    ++ +    S+   +    L +
Sbjct: 208 IMAELLTGRTLFPGTD------HIDQLKLILRLVGTPGAEL-LKKISSESARNYIQSLTQ 260

Query: 362 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 421
           + ++ F ++                   + L  +L    +KR TA Q L H + +  +  
Sbjct: 261 MPKMNFANVFIGANP----------LAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHDP 310

Query: 422 RDE 424
            DE
Sbjct: 311 DDE 313

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.2 bits (194), Expect = 9e-17
 Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 15/145 (10%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI---QKSAAQFAQAALHEIEVLSAVADGD 93
           RY     +G G +  V  A+DT+T   VA+K       +   A+    E+ +L  +    
Sbjct: 19  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHM---- 74

Query: 94  PSNEKCVIRLIDHFKHAG--PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKY 151
               + VI L+D F  A        + +V   +G  L  ++K    + L  + V+ +   
Sbjct: 75  --KHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 129

Query: 152 ILTGLDYLHRELGIIHTDLKPENIL 176
           IL GL Y+H    IIH DLKP N+ 
Sbjct: 130 ILRGLKYIH-SADIIHRDLKPSNLA 153

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 88.7 bits (219), Expect = 4e-20
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 14/143 (9%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN 96
            Y   RKLG G++S V+ A +   +  V +KI K   +  +    EI++L  +       
Sbjct: 36  DYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKK--KKIKREIKILENL-----RG 88

Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGL 156
              +I L D  K   P  +   +V E + ++  +      Y+ L    +R     IL  L
Sbjct: 89  GPNIITLADIVKD--PVSRTPALVFEHVNNTDFK----QLYQTLTDYDIRFYMYEILKAL 142

Query: 157 DYLHRELGIIHTDLKPENILLVS 179
           DY H  +GI+H D+KP N+++  
Sbjct: 143 DYCH-SMGIMHRDVKPHNVMIDH 164

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 84.5 bits (208), Expect = 1e-18
 Identities = 37/176 (21%), Positives = 75/176 (42%), Gaps = 14/176 (7%)

Query: 243 KPERCL-DGIDMRCKVVDFGNAC--RANKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWS 298
           KP   + D    + +++D+G A      +++   + +R ++ PE+++    Y +S+DMWS
Sbjct: 156 KPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWS 215

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
             C    +      F         ++ D L  + +++G       I     +     +  
Sbjct: 216 LGCMLASMIFRKEPFFHGH-----DNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDI 270

Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
           L R  R K W       +++  S     E  +FL  LL +  + R TA++ ++HP+
Sbjct: 271 LGRHSR-KRWERFVHSENQHLVSP----EALDFLDKLLRYDHQSRLTAREAMEHPY 321

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.6 bits (214), Expect = 9e-20
 Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 20/149 (13%)

Query: 33  FNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI---QKSAAQFAQAALHEIEVLSAV 89
              G+    +++G G F  V+          VA+K+        Q  QA  +E+ VL   
Sbjct: 5   IPDGQITVGQRIGSGSFGTVYKGKWHGD---VAVKMLNVTAPTPQQLQAFKNEVGVLRKT 61

Query: 90  ADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREI 148
                     ++  + +          L +V ++  G SL   +     K  E+ K+ +I
Sbjct: 62  ------RHVNILLFMGYS-----TAPQLAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDI 109

Query: 149 CKYILTGLDYLHRELGIIHTDLKPENILL 177
            +    G+DYLH +  IIH DLK  NI L
Sbjct: 110 ARQTAQGMDYLHAK-SIIHRDLKSNNIFL 137

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (160), Expect = 1e-12
 Identities = 33/185 (17%), Positives = 61/185 (32%), Gaps = 50/185 (27%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANK-----QFAEEIQTRQYRAPEVIL---RAGYSFSV 294
           K        D+  K+ DFG A   ++     QF +   +  + APEVI    +  YSF  
Sbjct: 131 KSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQS 190

Query: 295 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 354
           D+++F    +EL TG + +          + ++   ++ ++G+                 
Sbjct: 191 DVYAFGIVLYELMTGQLPY---------SNINNRDQIIFMVGR----------------- 224

Query: 355 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
                             L  D  +      +     +   L    ++RP   Q L    
Sbjct: 225 ----------------GYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIE 268

Query: 415 LSLRN 419
           L  R+
Sbjct: 269 LLARS 273

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.3 bits (215), Expect = 1e-19
 Identities = 33/182 (18%), Positives = 62/182 (34%), Gaps = 24/182 (13%)

Query: 243 KPERCLDGIDMRCKVVDFGNA-------CRANKQFAEEIQTRQYRAPEVIL-RAGYSFSV 294
           K    L   D   K+ DFG A            ++   + T  YR PE++L    Y   +
Sbjct: 144 KAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPI 203

Query: 295 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 354
           D+W   C   E+ T   +    +      ++  LAL+ +L G +            + + 
Sbjct: 204 DLWGAGCIMAEMWTRSPIMQGNT------EQHQLALISQLCGSITP----------EVWP 247

Query: 355 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 414
              + +   +L+     +  V     +        + +  LL   P +R  +   L H +
Sbjct: 248 NVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDF 307

Query: 415 LS 416
             
Sbjct: 308 FW 309

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.9 bits (214), Expect = 1e-19
 Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 15/152 (9%)

Query: 36  GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI---QKSAAQFAQAALHEIEVLSAVADG 92
            +Y    K+G G F  V+ A   +T   VALK    +     F   AL EI++L  +   
Sbjct: 10  SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLL--- 66

Query: 93  DPSNEKCVIRLIDHFKHAGP----NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREI 148
                + V+ LI+  +            + +V +F    L  L+     K   L++++ +
Sbjct: 67  ---KHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVK-FTLSEIKRV 122

Query: 149 CKYILTGLDYLHRELGIIHTDLKPENILLVST 180
            + +L GL Y+HR   I+H D+K  N+L+   
Sbjct: 123 MQMLLNGLYYIHRN-KILHRDMKAANVLITRD 153

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.5 bits (213), Expect = 1e-19
 Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 22/178 (12%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRA---NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 298
           KP+  L   +   K+ +FG A       + ++ E+ T  YR P+V+  A  YS S+DMWS
Sbjct: 128 KPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWS 187

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
             C   ELA       P +     + +D L  +  L+G    +      +  DY      
Sbjct: 188 AGCIFAELANAGRPLFPGN-----DVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMY 242

Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 416
                 +             + +        + L  LL   P +R +A++ LQHP+ S
Sbjct: 243 PATTSLVNVVP---------KLNA----TGRDLLQNLLKCNPVQRISAEEALQHPYFS 287

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (189), Expect = 2e-16
 Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 15/144 (10%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI---QKSAAQFAQAALHEIEVLSAVADGD 93
           +Y    K+G G +  V+ A +  T   VALK             +AL EI +L  +    
Sbjct: 3   KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKEL---- 58

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYIL 153
               K ++RL D         + L +V EF    L +              V+     +L
Sbjct: 59  --KHKNIVRLHDVLHS----DKKLTLVFEFCDQDLKKYFDSCNGDLDP-EIVKSFLFQLL 111

Query: 154 TGLDYLHRELGIIHTDLKPENILL 177
            GL + H    ++H DLKP+N+L+
Sbjct: 112 KGLGFCHSR-NVLHRDLKPQNLLI 134

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.4 bits (211), Expect = 2e-19
 Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 18/150 (12%)

Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKI---QKSAAQFAQAALHEIEVLSAVADGDP 94
           Y     +G G +              +  K            Q  + E+ +L  +     
Sbjct: 6   YEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLREL----- 60

Query: 95  SNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSR--YKGLELNKVREICKY 151
                ++R  D           L +V+E+  G  L  +I       + L+   V  +   
Sbjct: 61  -KHPNIVRYYDRIID--RTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQ 117

Query: 152 ILTGLDYLHRE----LGIIHTDLKPENILL 177
           +   L   HR       ++H DLKP N+ L
Sbjct: 118 LTLALKECHRRSDGGHTVLHRDLKPANVFL 147

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.6 bits (201), Expect = 4e-18
 Identities = 40/176 (22%), Positives = 61/176 (34%), Gaps = 50/176 (28%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFA---EEIQTRQYRAPEVILRAGYSFSVDMWSF 299
           KP           K+ DFG A   N   +     + T  Y +PE + R  Y+   D+WS 
Sbjct: 141 KPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSL 200

Query: 300 ACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDL 359
            C  +EL      F   S               EL GK+                R G  
Sbjct: 201 GCLLYELCALMPPFTAFS-------------QKELAGKI----------------REGKF 231

Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 415
           +RI               YR+S+    E  E +  +L+     RP+ ++ L++P +
Sbjct: 232 RRI--------------PYRYSD----ELNEIITRMLNLKDYHRPSVEEILENPLI 269

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.8 bits (212), Expect = 2e-19
 Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 18/146 (12%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI----QKSAAQFAQAALHEIEVLSAVADG 92
            +   + LG G FS V LA +  TS   A+KI                 E +V+S +   
Sbjct: 9   DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL--- 65

Query: 93  DPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKY 151
              +    ++L   F+      + L   L +     LL+ I+  +    +    R     
Sbjct: 66  ---DHPFFVKLYFTFQD----DEKLYFGLSYAKNGELLKYIR--KIGSFDETCTRFYTAE 116

Query: 152 ILTGLDYLHRELGIIHTDLKPENILL 177
           I++ L+YLH   GIIH DLKPENILL
Sbjct: 117 IVSALEYLH-GKGIIHRDLKPENILL 141

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.9 bits (168), Expect = 1e-13
 Identities = 33/185 (17%), Positives = 56/185 (30%), Gaps = 59/185 (31%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQT-----RQYRAPEVILRAGYSFSVDMW 297
           KPE  L   DM  ++ DFG A   + +  +          QY +PE++       S D+W
Sbjct: 135 KPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLW 194

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           +  C  ++L  G   F             +  L+ + I K+                   
Sbjct: 195 ALGCIIYQLVAGLPPF----------RAGNEYLIFQKIIKL------------------- 225

Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQC------LQ 411
                              +Y F E    +  + +  LL     KR   ++         
Sbjct: 226 -------------------EYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKA 266

Query: 412 HPWLS 416
           HP+  
Sbjct: 267 HPFFE 271

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.5 bits (211), Expect = 3e-19
 Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 12/142 (8%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN 96
               + KLG GQ+  V+     + S  VA+K  K      +  L E  V+  +       
Sbjct: 18  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEI------K 71

Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTG 155
              +++L+              ++ EF+   +LL  ++    + +    +  +   I + 
Sbjct: 72  HPNLVQLLGVCTREP----PFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSA 127

Query: 156 LDYLHRELGIIHTDLKPENILL 177
           ++YL +    IH DL   N L+
Sbjct: 128 MEYLEK-KNFIHRDLAARNCLV 148

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.8 bits (113), Expect = 1e-06
 Identities = 32/173 (18%), Positives = 50/173 (28%), Gaps = 50/173 (28%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRAN----KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 298
               CL G +   KV DFG +           A      ++ APE +    +S   D+W+
Sbjct: 142 AARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWA 201

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
           F    +E+AT  M   P            L+ + EL+ K  R                  
Sbjct: 202 FGVLLWEIATYGMSPYP---------GIDLSQVYELLEKDYR------------------ 234

Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ 411
                                  E    +  E +     + P  RP+  +  Q
Sbjct: 235 -------------------MERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQ 268

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.5 bits (211), Expect = 3e-19
 Identities = 36/179 (20%), Positives = 69/179 (38%), Gaps = 18/179 (10%)

Query: 39  IAQRKLGWGQFSIVWLAYD--TRTSSYVALKI--QKSAAQFAQAALHEIEVLSAVADGDP 94
           IA  +LG G F  V        +    VA+K+  Q +     +  + E +++  +     
Sbjct: 12  IADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQL----- 66

Query: 95  SNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILT 154
            +   ++RLI   +      + L +V+E  G   L      + + + ++ V E+   +  
Sbjct: 67  -DNPYIVRLIGVCQ-----AEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSM 120

Query: 155 GLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTI 213
           G+ YL  +   +H DL   N+LLV+           GL+  L   +      S     +
Sbjct: 121 GMKYLEEK-NFVHRDLAARNVLLVN--RHYAKISDFGLSKALGADDSYYTARSAGKWPL 176

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (116), Expect = 4e-07
 Identities = 27/194 (13%), Positives = 48/194 (24%), Gaps = 55/194 (28%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ------TRQYRAPEVILRAGYSFSVDM 296
                L       K+ DFG +       +            ++ APE I    +S   D+
Sbjct: 136 AARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDV 195

Query: 297 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 356
           WS+  T +E  +                           G+ P K      +  +     
Sbjct: 196 WSYGVTMWEALSY--------------------------GQKPYK----KMKGPEVMAFI 225

Query: 357 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQ---QCLQHP 413
              KR+                        E    +     +  E RP      Q ++  
Sbjct: 226 EQGKRMECPPECP----------------PELYALMSDCWIYKWEDRPDFLTVEQRMRAC 269

Query: 414 WLSLRNSTRDETKN 427
           + SL +       +
Sbjct: 270 YYSLASKVEGHHHH 283

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 85.5 bits (211), Expect = 4e-19
 Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 16/152 (10%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI--QKSAAQFAQAALHEIEVLSAVADGDP 94
            Y  +  LG G FS V LA D RT   VA+K   +K+      +  +EI VL  +     
Sbjct: 10  IYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKI----- 64

Query: 95  SNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYIL 153
                ++ L D ++     G HL ++++ + G  L   I               +   +L
Sbjct: 65  -KHPNIVALDDIYES----GGHLYLIMQLVSGGELFDRIV--EKGFYTERDASRLIFQVL 117

Query: 154 TGLDYLHRELGIIHTDLKPENILLVSTIDPSK 185
             + YLH +LGI+H DLKPEN+L  S  + SK
Sbjct: 118 DAVKYLH-DLGIVHRDLKPENLLYYSLDEDSK 148

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 71.2 bits (174), Expect = 3e-14
 Identities = 44/199 (22%), Positives = 75/199 (37%), Gaps = 47/199 (23%)

Query: 248 LDGIDMRCKVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFE 305
               D +  + DFG +         +    T  Y APEV+ +  YS +VD WS    A+ 
Sbjct: 142 SLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYI 201

Query: 306 LATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRL 365
           L  G   F           +++ A + E I K   +                        
Sbjct: 202 LLCGYPPF----------YDENDAKLFEQILKAEYEF---------------------DS 230

Query: 366 KFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDET 425
            +W            S+       +F+  L++  PEKR T +Q LQHPW++  ++  D+ 
Sbjct: 231 PYWD---------DISD----SAKDFIRHLMEKDPEKRFTCEQALQHPWIA-GDTALDKN 276

Query: 426 KNKSNVEKVDVGMSKLEIK 444
            ++S  E++    +K + K
Sbjct: 277 IHQSVSEQIKKNFAKSKWK 295

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.8 bits (204), Expect = 2e-18
 Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 14/142 (9%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN 96
                + +G G+F  V L       + VA+K  K+ A  AQA L E  V++ +       
Sbjct: 8   ELKLLQTIGKGEFGDVMLG--DYRGNKVAVKCIKNDAT-AQAFLAEASVMTQL------R 58

Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTG 155
              +++L+            L +V E++   SL+  ++      L  + + +    +   
Sbjct: 59  HSNLVQLLGVIVE---EKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEA 115

Query: 156 LDYLHRELGIIHTDLKPENILL 177
           ++YL      +H DL   N+L+
Sbjct: 116 MEYLEGN-NFVHRDLAARNVLV 136

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (158), Expect = 2e-12
 Identities = 23/170 (13%), Positives = 41/170 (24%), Gaps = 46/170 (27%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
                L   D   KV DFG    A+          ++ APE +    +S   D+WSF   
Sbjct: 130 AARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGIL 189

Query: 303 AFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRI 362
            +E+ +   +               L  ++  + K  +                      
Sbjct: 190 LWEIYSFGRVP---------YPRIPLKDVVPRVEKGYK---------------------- 218

Query: 363 RRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 412
                              +       E +          RP+  Q  + 
Sbjct: 219 ---------------MDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQ 253

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.8 bits (204), Expect = 2e-18
 Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 14/142 (9%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN 96
               + KLG G F  VW+     T+  VA+K  K      +A L E +V+  +       
Sbjct: 18  SLRLEVKLGQGCFGEVWMGTWNGTT-RVAIKTLKPGTMSPEAFLQEAQVMKKL------R 70

Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTG 155
            + +++L           + + +V E++   SLL  +K    K L L ++ ++   I +G
Sbjct: 71  HEKLVQLYAVVSE-----EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASG 125

Query: 156 LDYLHRELGIIHTDLKPENILL 177
           + Y+ R +  +H DL+  NIL+
Sbjct: 126 MAYVER-MNYVHRDLRAANILV 146

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (137), Expect = 9e-10
 Identities = 30/180 (16%), Positives = 52/180 (28%), Gaps = 52/180 (28%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWS 298
           +    L G ++ CKV DFG A           Q      ++ APE  L   ++   D+WS
Sbjct: 140 RAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 199

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
           F     EL T         G+       +  ++ +                         
Sbjct: 200 FGILLTELTTK--------GRVPYPGMVNREVLDQ------------------------- 226

Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ--HPWLS 416
           ++R  R+                E       + +       PE+RPT +        + +
Sbjct: 227 VERGYRMPCPP---------ECPE----SLHDLMCQCWRKEPEERPTFEYLQAFLEDYFT 273

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.5 bits (203), Expect = 5e-18
 Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 16/145 (11%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI----QKSAAQFAQAALHEIEVLSAVADG 92
           ++   + LG G F  V L     + ++ A+KI    +    +  +  L+E  +L AV   
Sbjct: 42  QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAV--- 98

Query: 93  DPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYI 152
              N   +++L   FK    N     ++    G  +   ++  R         R     I
Sbjct: 99  ---NFPFLVKLEFSFKD---NSNLYMVMEYVAGGEMFSHLR--RIGRFSEPHARFYAAQI 150

Query: 153 LTGLDYLHRELGIIHTDLKPENILL 177
           +   +YLH  L +I+ DLKPEN+L+
Sbjct: 151 VLTFEYLH-SLDLIYRDLKPENLLI 174

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.5 bits (138), Expect = 1e-09
 Identities = 37/179 (20%), Positives = 51/179 (28%), Gaps = 53/179 (29%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L       +V DFG A R   +      T +  APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVL 227

Query: 303 AFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRI 362
            +E+A G   F            D    + E I                           
Sbjct: 228 IYEMAAGYPPF----------FADQPIQIYEKIVSGK----------------------- 254

Query: 363 RRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKR-----PTAQQCLQHPWLS 416
                           RF    + +  + L  LL     KR             H W +
Sbjct: 255 ---------------VRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 298

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.1 bits (202), Expect = 6e-18
 Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 17/145 (11%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQK----SAAQFAQAALHEIEVLSAVADG 92
            +I  + LG G F  V+LA   +T+ + A+K  K          +  + E  VLS     
Sbjct: 3   DFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLA--- 59

Query: 93  DPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKY 151
                  +  +   F+      ++L  V+E+L G  L+  I+       +L++       
Sbjct: 60  --WEHPFLTHMFCTFQT----KENLFFVMEYLNGGDLMYHIQ--SCHKFDLSRATFYAAE 111

Query: 152 ILTGLDYLHRELGIIHTDLKPENIL 176
           I+ GL +LH   GI++ DLK +NIL
Sbjct: 112 IILGLQFLH-SKGIVYRDLKLDNIL 135

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.9 bits (173), Expect = 3e-14
 Identities = 37/179 (20%), Positives = 52/179 (29%), Gaps = 52/179 (29%)

Query: 242 PKPERCLDGIDMRCKVVDFGNA---CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 298
            K +  L   D   K+ DFG        + +      T  Y APE++L   Y+ SVD WS
Sbjct: 129 LKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWS 188

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
           F    +E+  G   F           +D   L                            
Sbjct: 189 FGVLLYEMLIGQSPF---------HGQDEEEL---------------------------- 211

Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA-QQCLQHPWLS 416
                         + +D   +     +E  + LV L    PEKR        QHP   
Sbjct: 212 -----------FHSIRMDNPFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQHPLFR 259

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.3 bits (200), Expect = 6e-18
 Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 12/141 (8%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN 96
                +++G GQF +V L Y       VA+K  +  A   +  + E EV+  +      +
Sbjct: 6   ELTFVQEIGSGQFGLVHLGYW-LNKDKVAIKTIREGAMSEEDFIEEAEVMMKL------S 58

Query: 97  EKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGL 156
              +++L             +C+V EF+    L     ++        +  +C  +  G+
Sbjct: 59  HPKLVQLYGVCLE----QAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGM 114

Query: 157 DYLHRELGIIHTDLKPENILL 177
            YL  E  +IH DL   N L+
Sbjct: 115 AYLE-EACVIHRDLAARNCLV 134

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (131), Expect = 5e-09
 Identities = 29/174 (16%), Positives = 49/174 (28%), Gaps = 50/174 (28%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWS 298
               CL G +   KV DFG                    ++ +PEV   + YS   D+WS
Sbjct: 128 AARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWS 187

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
           F    +E+ +         G+   E+  +  ++                          D
Sbjct: 188 FGVLMWEVFSE--------GKIPYENRSNSEVVE-------------------------D 214

Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 412
           +    RL    L              +    + +       PE RP   + L+ 
Sbjct: 215 ISTGFRLYKPRL-------------ASTHVYQIMNHCWKERPEDRPAFSRLLRQ 255

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.1 bits (202), Expect = 7e-18
 Identities = 36/146 (24%), Positives = 57/146 (39%), Gaps = 16/146 (10%)

Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQK----SAAQFAQAALHEIEVLSAVADGD 93
           +   R LG G F  V L        Y A+K+ K       +  +    E  +LS V    
Sbjct: 6   FQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIV---- 61

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYIL 153
                 +IR+   F+      Q + M+++++    L  +     +       +     + 
Sbjct: 62  --THPFIIRMWGTFQD----AQQIFMIMDYIEGGELFSLLRKSQRFPN-PVAKFYAAEVC 114

Query: 154 TGLDYLHRELGIIHTDLKPENILLVS 179
             L+YLH    II+ DLKPENILL  
Sbjct: 115 LALEYLH-SKDIIYRDLKPENILLDK 139

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.1 bits (158), Expect = 3e-12
 Identities = 34/179 (18%), Positives = 52/179 (29%), Gaps = 53/179 (29%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 302
           KPE  L   +   K+ DFG A            T  Y APEV+    Y+ S+D WSF   
Sbjct: 131 KPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGIL 190

Query: 303 AFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRI 362
            +E+  G   F   +              M+                             
Sbjct: 191 IYEMLAGYTPFYDSN-------------TMKT---------------------------- 209

Query: 363 RRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKR-----PTAQQCLQHPWLS 416
                   +++L  + RF      +  + L  L+     +R        +    HPW  
Sbjct: 210 -------YEKILNAELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFK 261

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (201), Expect = 8e-18
 Identities = 34/167 (20%), Positives = 57/167 (34%), Gaps = 34/167 (20%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTR-----TSSYVALKI--QKSAAQFAQAALHEIEVLSAV 89
           R    + LG G F  V  A          +  VA+K+    +     +A + E++VLS +
Sbjct: 24  RLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYL 83

Query: 90  ADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYK---------- 138
                 N   ++ L+         G    ++ E+     LL  ++  R            
Sbjct: 84  -----GNHMNIVNLLGACTI----GGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAI 134

Query: 139 ------GLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVS 179
                  L+L  +      +  G+ +L      IH DL   NILL  
Sbjct: 135 MEDDELALDLEDLLSFSYQVAKGMAFLA-SKNCIHRDLAARNILLTH 180

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 30/174 (17%), Positives = 48/174 (27%), Gaps = 50/174 (28%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ-----YRAPEVILRAGYSFSVDMW 297
                L       K+ DFG A          ++        + APE I    Y+F  D+W
Sbjct: 172 AARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVW 231

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S+    +EL +         G          +   ++I +  R +               
Sbjct: 232 SYGIFLWELFSL--------GSSPYPGMPVDSKFYKMIKEGFRML--------------- 268

Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ 411
                                   E    E  + +    D  P KRPT +Q +Q
Sbjct: 269 ----------------------SPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQ 300

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.3 bits (197), Expect = 2e-17
 Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 19/151 (12%)

Query: 35  GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDP 94
               + Q  +G G+F  VW          VA+KI  S  +  ++   E E+   V     
Sbjct: 2   ARTIVLQESIGKGRFGEVWRGKWRGE--EVAVKIFSS--REERSWFREAEIYQTVM---- 53

Query: 95  SNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYIL 153
              + ++  I            L +V ++    SL   +       + +  + ++     
Sbjct: 54  LRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYL---NRYTVTVEGMIKLALSTA 110

Query: 154 TGLDYLHRE-------LGIIHTDLKPENILL 177
           +GL +LH E         I H DLK +NIL+
Sbjct: 111 SGLAHLHMEIVGTQGKPAIAHRDLKSKNILV 141

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.6 bits (193), Expect = 4e-17
 Identities = 26/140 (18%), Positives = 58/140 (41%), Gaps = 12/140 (8%)

Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNE 97
               ++LG GQF +V      R    VA+K+ K  +      + E +V+  +      + 
Sbjct: 6   LTFLKELGTGQFGVVKYGKW-RGQYDVAIKMIKEGSMSEDEFIEEAKVMMNL------SH 58

Query: 98  KCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLD 157
           + +++L           + + ++ E++ +  L           +  ++ E+CK +   ++
Sbjct: 59  EKLVQLYGVCTK----QRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAME 114

Query: 158 YLHRELGIIHTDLKPENILL 177
           YL  +   +H DL   N L+
Sbjct: 115 YLESK-QFLHRDLAARNCLV 133

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (121), Expect = 9e-08
 Identities = 26/174 (14%), Positives = 48/174 (27%), Gaps = 50/174 (28%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQ----FAEEIQTRQYRAPEVILRAGYSFSVDMWS 298
               CL       KV DFG +                  ++  PEV++ + +S   D+W+
Sbjct: 127 AARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWA 186

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
           F    +E+ +                           GKMP         + +  +    
Sbjct: 187 FGVLMWEIYSL--------------------------GKMP----YERFTNSETAEHIAQ 216

Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 412
             R+ R    S                 +    +        ++RPT +  L +
Sbjct: 217 GLRLYRPHLAS----------------EKVYTIMYSCWHEKADERPTFKILLSN 254

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.0 bits (194), Expect = 5e-17
 Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 19/150 (12%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKI-------QKSAAQFAQAALHEIEVLSAV 89
            Y    +LG GQF++V    +  T    A K                +    E+ +L  +
Sbjct: 11  YYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEI 70

Query: 90  ADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREIC 149
                     VI L + +++       + ++LE +    L      + + L   +  E  
Sbjct: 71  ------QHPNVITLHEVYEN----KTDVILILELVAGGELFDFLAEK-ESLTEEEATEFL 119

Query: 150 KYILTGLDYLHRELGIIHTDLKPENILLVS 179
           K IL G+ YLH  L I H DLKPENI+L+ 
Sbjct: 120 KQILNGVYYLH-SLQIAHFDLKPENIMLLD 148

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.2 bits (184), Expect = 1e-15
 Identities = 37/176 (21%), Positives = 64/176 (36%), Gaps = 46/176 (26%)

Query: 249 DGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFEL 306
           +    R K++DFG A + +   +F     T ++ APE++         DMWS     + L
Sbjct: 150 NVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYIL 209

Query: 307 ATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLK 366
            +G   F   +       ++ LA +  +  +   +                         
Sbjct: 210 LSGASPFLGDT------KQETLANVSAVNYEFEDEY------------------------ 239

Query: 367 FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR 422
                        FS T A    +F+  LL   P+KR T Q  LQHPW+  +++ +
Sbjct: 240 -------------FSNTSA-LAKDFIRRLLVKDPKKRMTIQDSLQHPWIKPKDTQQ 281

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (190), Expect = 1e-16
 Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 17/146 (11%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSY---VALKIQKSAA--QFAQAALHEIEVLSAVAD 91
           R    R +G GQF  V         +    VA+K  K+       +  L E   +     
Sbjct: 8   RIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQF-- 65

Query: 92  GDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKY 151
               +   +++LI            + +++E      LR     R   L+L  +      
Sbjct: 66  ----DHPHIVKLIGVITE-----NPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQ 116

Query: 152 ILTGLDYLHRELGIIHTDLKPENILL 177
           + T L YL      +H D+   N+L+
Sbjct: 117 LSTALAYLE-SKRFVHRDIAARNVLV 141

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 2e-05
 Identities = 22/174 (12%), Positives = 44/174 (25%), Gaps = 50/174 (28%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWS 298
                L   +   K+ DFG +         +        ++ APE I    ++ + D+W 
Sbjct: 135 AARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWM 194

Query: 299 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 358
           F    +E+                             G  P +    G ++ D   R  +
Sbjct: 195 FGVCMWEILMH--------------------------GVKPFQ----GVKNNDVIGRIEN 224

Query: 359 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 412
            +R+                             +     + P +RP   +    
Sbjct: 225 GERLPMPPNCP----------------PTLYSLMTKCWAYDPSRRPRFTELKAQ 262

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (190), Expect = 2e-16
 Identities = 28/170 (16%), Positives = 62/170 (36%), Gaps = 39/170 (22%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSS-----YVALKI--QKSAAQFAQAALHEIEVLSAV 89
                + LG G F  V  A     S       VA+K+  +K+ +   +A + E+++++ +
Sbjct: 38  NLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQL 97

Query: 90  ADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKG--------- 139
                 + + ++ L+     +G     + ++ E+     LL  ++  R K          
Sbjct: 98  -----GSHENIVNLLGACTLSG----PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYEN 148

Query: 140 ------------LELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
                       L    +      +  G+++L      +H DL   N+L+
Sbjct: 149 QKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE-FKSCVHRDLAARNVLV 197

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 3e-07
 Identities = 23/175 (13%), Positives = 39/175 (22%), Gaps = 50/175 (28%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ-----TRQYRAPEVILRAGYSFSVDMW 297
                L       K+ DFG A          ++       ++ APE +    Y+   D+W
Sbjct: 191 AARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVW 250

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S+    +E+ +         G          A   +LI    +                 
Sbjct: 251 SYGILLWEIFSL--------GVNPYPGIPVDANFYKLIQNGFK----------------- 285

Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 412
                                        E    +     F   KRP+       
Sbjct: 286 --------------------MDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSF 320

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.7 bits (188), Expect = 3e-16
 Identities = 31/147 (21%), Positives = 61/147 (41%), Gaps = 20/147 (13%)

Query: 39  IAQRKLGWGQFSIVWLAY--DTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGD 93
           +  ++LG G F  V   Y    +    VA+KI K+ A         L E  V+  +    
Sbjct: 10  LEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQL---- 65

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYI 152
             +   ++R+I   +      +   +V+E      L + ++  + + ++   + E+   +
Sbjct: 66  --DNPYIVRMIGICEA-----ESWMLVMEMAELGPLNKYLQ--QNRHVKDKNIIELVHQV 116

Query: 153 LTGLDYLHRELGIIHTDLKPENILLVS 179
             G+ YL      +H DL   N+LLV+
Sbjct: 117 SMGMKYLEES-NFVHRDLAARNVLLVT 142

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (135), Expect = 1e-09
 Identities = 26/186 (13%), Positives = 47/186 (25%), Gaps = 55/186 (29%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ------TRQYRAPEVILRAGYSFSVDM 296
                L       K+ DFG +                    ++ APE I    +S   D+
Sbjct: 134 AARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDV 193

Query: 297 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 356
           WSF    +E  +                           G+ P +    G +  +     
Sbjct: 194 WSFGVLMWEAFSY--------------------------GQKPYR----GMKGSEVTAML 223

Query: 357 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQ---CLQHP 413
              +R+                       RE  + +     +  E RP        L++ 
Sbjct: 224 EKGERMGCPAGCP----------------REMYDLMNLCWTYDVENRPGFAAVELRLRNY 267

Query: 414 WLSLRN 419
           +  + N
Sbjct: 268 YYDVVN 273

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.3 bits (187), Expect = 4e-16
 Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 16/146 (10%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSS---YVALKIQKSAA--QFAQAALHEIEVLSAVAD 91
               ++ +G G+F  V   +         +VA+K  KS    +  +  L E  ++     
Sbjct: 27  CVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQF-- 84

Query: 92  GDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKY 151
               +   VI L             + ++ EF+ +  L            + ++  + + 
Sbjct: 85  ----DHPNVIHLEGVVTK----STPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRG 136

Query: 152 ILTGLDYLHRELGIIHTDLKPENILL 177
           I  G+ YL   +  +H DL   NIL+
Sbjct: 137 IAAGMKYLAD-MNYVHRDLAARNILV 161

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.4 bits (112), Expect = 1e-06
 Identities = 26/191 (13%), Positives = 52/191 (27%), Gaps = 62/191 (32%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ--------YRAPEVILRAGYSFSV 294
                L   ++ CKV DFG +       ++   T          + APE I    ++ + 
Sbjct: 155 AARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSAS 214

Query: 295 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 354
           D+WS+    +E+ +         G+    D  +  + +  I +  R              
Sbjct: 215 DVWSYGIVMWEVMSY--------GERPYWDMTNQDV-INAIEQDYR-------------- 251

Query: 355 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQ------ 408
                                              + ++         RP   Q      
Sbjct: 252 -----------------------LPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLD 288

Query: 409 -CLQHPWLSLR 418
             +++P  SL+
Sbjct: 289 KMIRNPN-SLK 298

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (178), Expect = 5e-15
 Identities = 31/143 (21%), Positives = 47/143 (32%), Gaps = 19/143 (13%)

Query: 42  RKLGWGQFSIVWLAYDTRTSS---YVALKIQK----SAAQFAQAALHEIEVLSAVADGDP 94
            KLG G F +V        S     VA+K  K    S  +     + E+  + ++     
Sbjct: 14  EKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSL----- 68

Query: 95  SNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILT 154
            + + +IRL             + MV E      L            L  +      +  
Sbjct: 69  -DHRNLIRLYGVVLT-----PPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAE 122

Query: 155 GLDYLHRELGIIHTDLKPENILL 177
           G+ YL      IH DL   N+LL
Sbjct: 123 GMGYLE-SKRFIHRDLAARNLLL 144

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (116), Expect = 4e-07
 Identities = 26/178 (14%), Positives = 45/178 (25%), Gaps = 55/178 (30%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ------TRQYRAPEVILRAGYSFSVDM 296
                L       K+ DFG      +     +          + APE +    +S + D 
Sbjct: 138 AARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDT 197

Query: 297 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 356
           W F  T +E+ T                           G+ P            +   +
Sbjct: 198 WMFGVTLWEMFTY--------------------------GQEP------------WIGLN 219

Query: 357 GDLKRIRRLKFWSLDRLLVDKYRFSETD--AREFAEFLVPLLDFTPEKRPTAQQCLQH 412
           G            L ++  +  R    +   ++    +V      PE RPT       
Sbjct: 220 GS---------QILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDF 268

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.0 bits (178), Expect = 6e-15
 Identities = 32/165 (19%), Positives = 59/165 (35%), Gaps = 34/165 (20%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTS-------SYVALKI--QKSAAQFAQAALHEIEVLS 87
           R +  + LG G F  V LA             + VA+K+    +  +     + E+E++ 
Sbjct: 14  RLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMK 73

Query: 88  AVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLEL---- 142
            +        K +I L+            L +++E+    +L   ++  R  GLE     
Sbjct: 74  MI-----GKHKNIINLLGACTQ----DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNP 124

Query: 143 ----------NKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
                       +      +  G++YL      IH DL   N+L+
Sbjct: 125 SHNPEEQLSSKDLVSCAYQVARGMEYLA-SKKCIHRDLAARNVLV 168

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 7e-06
 Identities = 28/175 (16%), Positives = 49/175 (28%), Gaps = 51/175 (29%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEE-----IQTRQYRAPEVILRAGYSFSVDMW 297
                L   D   K+ DFG A   +     +         ++ APE +    Y+   D+W
Sbjct: 162 AARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVW 221

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           SF    +E+ T                           G  P      G   ++ F    
Sbjct: 222 SFGVLLWEIFTL--------------------------GGSP----YPGVPVEELFKLLK 251

Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 412
           +  R+ +    +                 E    +       P +RPT +Q ++ 
Sbjct: 252 EGHRMDKPSNCT----------------NELYMMMRDCWHAVPSQRPTFKQLVED 290

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 1e-14
 Identities = 32/160 (20%), Positives = 59/160 (36%), Gaps = 29/160 (18%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQK----SAAQFAQAALHEIEVLSAVADG 92
               Q  +G G F  V  A   +    +   I++    ++    +    E+EVL  +   
Sbjct: 11  DIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKL--- 67

Query: 93  DPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIK--------------YSRY 137
              +   +I L+   +H G    +L + +E+    +LL  ++               S  
Sbjct: 68  --GHHPNIINLLGACEHRG----YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTA 121

Query: 138 KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
             L   ++      +  G+DYL  +   IH DL   NIL+
Sbjct: 122 STLSSQQLLHFAADVARGMDYLS-QKQFIHRDLAARNILV 160

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 8e-07
 Identities = 25/187 (13%), Positives = 49/187 (26%), Gaps = 50/187 (26%)

Query: 243 KPERCLDGIDMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFA 300
                L G +   K+ DFG +       +        ++ A E +  + Y+ + D+WS+ 
Sbjct: 154 AARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYG 213

Query: 301 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 360
              +E+ +                    A + E + +  R                    
Sbjct: 214 VLLWEIVSLGGTP---------YCGMTCAELYEKLPQGYR-------------------- 244

Query: 361 RIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH--PWLSLR 418
                                     E  + +       P +RP+  Q L      L  R
Sbjct: 245 -----------------LEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEER 287

Query: 419 NSTRDET 425
            +  + T
Sbjct: 288 KTYVNTT 294

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (173), Expect = 3e-14
 Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 16/144 (11%)

Query: 38  YIAQRKLGWGQFSIVWLAYDTRTSSYVALKI----QKSAAQFAQAALHEIEVLSAVADGD 93
           +   + LG G F  V L  +  T  Y A+KI       A       + E  VL       
Sbjct: 7   FDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNT---- 62

Query: 94  PSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYIL 153
                 +  L   F+    + +   ++    G  L   +   R +     + R     I+
Sbjct: 63  --RHPFLTALKYAFQT---HDRLCFVMEYANGGELFFHLS--RERVFTEERARFYGAEIV 115

Query: 154 TGLDYLHRELGIIHTDLKPENILL 177
           + L+YLH    +++ D+K EN++L
Sbjct: 116 SALEYLH-SRDVVYRDIKLENLML 138

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (150), Expect = 3e-11
 Identities = 35/182 (19%), Positives = 58/182 (31%), Gaps = 56/182 (30%)

Query: 243 KPERCLDGIDMRCKVVDFGNA---CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSF 299
           K E  +   D   K+ DFG                 T +Y APEV+    Y  +VD W  
Sbjct: 132 KLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGL 191

Query: 300 ACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDL 359
               +E+  G + F          ++DH  L                             
Sbjct: 192 GVVMYEMMCGRLPF---------YNQDHERL----------------------------- 213

Query: 360 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPW 414
                      + +L+++ RF  T + E    L  LL   P++R       A++ ++H +
Sbjct: 214 ----------FELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRF 263

Query: 415 LS 416
             
Sbjct: 264 FL 265

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (168), Expect = 1e-13
 Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 19/149 (12%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTR---TSSYVALKIQKSA-----AQFAQAALHEIEVLSA 88
            +   + LG G +  V+L        T    A+K+ K A     A+  +    E +VL  
Sbjct: 25  NFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEH 84

Query: 89  VADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREI 148
           +          ++ L   F+        L ++L+++    L      R +  E      +
Sbjct: 85  I-----RQSPFLVTLHYAFQT----ETKLHLILDYINGGELFTHLSQRERFTEHEVQIYV 135

Query: 149 CKYILTGLDYLHRELGIIHTDLKPENILL 177
            + I+  L++LH +LGII+ D+K ENILL
Sbjct: 136 GE-IVLALEHLH-KLGIIYRDIKLENILL 162

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (125), Expect = 3e-08
 Identities = 29/184 (15%), Positives = 52/184 (28%), Gaps = 55/184 (29%)

Query: 244 PERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ----YRAPEVIL--RAGYSFSVDMW 297
            E  L   +    + DFG +        E          Y AP+++    +G+  +VD W
Sbjct: 157 LENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWW 216

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S     +EL TG   F          +++  A +   I K                    
Sbjct: 217 SLGVLMYELLTGASPFTVDG------EKNSQAEISRRILKSE------------------ 252

Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQH 412
                                 + +  +    + +  LL   P+KR       A +  +H
Sbjct: 253 --------------------PPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEH 292

Query: 413 PWLS 416
            +  
Sbjct: 293 LFFQ 296

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (163), Expect = 5e-13
 Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 18/142 (12%)

Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKI------QKSAAQFAQAALHEIEVLSAVADGDPS 95
           + LG G F  V+          V + +      + ++ +  +  L E  V+++V      
Sbjct: 15  KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV------ 68

Query: 96  NEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTG 155
           +   V RL+            + ++ + +    L          +    +   C  I  G
Sbjct: 69  DNPHVCRLLGICLT-----STVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 123

Query: 156 LDYLHRELGIIHTDLKPENILL 177
           ++YL     ++H DL   N+L+
Sbjct: 124 MNYLEDR-RLVHRDLAARNVLV 144

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (131), Expect = 7e-09
 Identities = 28/185 (15%), Positives = 47/185 (25%), Gaps = 51/185 (27%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ-----TRQYRAPEVILRAGYSFSVDMW 297
                L       K+ DFG A     +  E          ++ A E IL   Y+   D+W
Sbjct: 138 AARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVW 197

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           S+  T +EL T         G    +      +                           
Sbjct: 198 SYGVTVWELMTF--------GSKPYDGIPASEISSI------------------------ 225

Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 417
            L++  RL                     +    +V       + RP  ++ +       
Sbjct: 226 -LEKGERLPQP-------------PICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMA 271

Query: 418 RNSTR 422
           R+  R
Sbjct: 272 RDPQR 276

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (162), Expect = 6e-13
 Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 27/157 (17%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDT-----RTSSYVALKI--QKSAAQFAQAALHEIEVLSAV 89
           +    R+LG G F +V+             + VA+K   + ++ +     L+E  V+   
Sbjct: 21  KITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEF 80

Query: 90  ADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKG--------L 140
                 N   V+RL+         GQ   +++E +    L   ++  R            
Sbjct: 81  ------NCHHVVRLLGVVSQ----GQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPP 130

Query: 141 ELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
            L+K+ ++   I  G+ YL+     +H DL   N ++
Sbjct: 131 SLSKMIQMAGEIADGMAYLNAN-KFVHRDLAARNCMV 166

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 7e-05
 Identities = 21/175 (12%), Positives = 47/175 (26%), Gaps = 51/175 (29%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR-----QYRAPEVILRAGYSFSVDMW 297
               C+   D   K+ DFG      +        +     ++ +PE +    ++   D+W
Sbjct: 160 AARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVW 219

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           SF    +E+AT                            + P +    G  ++       
Sbjct: 220 SFGVVLWEIATL--------------------------AEQPYQ----GLSNEQVLRFVM 249

Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 412
           +   + +                         E +     + P+ RP+  + +  
Sbjct: 250 EGGLLDKPDNCP----------------DMLFELMRMCWQYNPKMRPSFLEIISS 288

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (161), Expect = 1e-12
 Identities = 21/142 (14%), Positives = 44/142 (30%), Gaps = 15/142 (10%)

Query: 41  QRKLGWGQFSIVWLAYDTRTSS---YVALKIQK--SAAQFAQAALHEIEVLSAVADGDPS 95
              +G G F  V+            + A+K     +        L E  ++         
Sbjct: 32  NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDF------ 85

Query: 96  NEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTG 155
           +   V+ L+        +     +VL ++    LR    +      +  +      +  G
Sbjct: 86  SHPNVLSLLGICLR---SEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKG 142

Query: 156 LDYLHRELGIIHTDLKPENILL 177
           + +L  +   +H DL   N +L
Sbjct: 143 MKFLASK-KFVHRDLAARNCML 163

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 4e-08
 Identities = 24/177 (13%), Positives = 49/177 (27%), Gaps = 53/177 (29%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ-------TRQYRAPEVILRAGYSFSVD 295
               C+       KV DFG A     +  + +          ++ A E +    ++   D
Sbjct: 157 AARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSD 216

Query: 296 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 355
           +WSF    +EL T         G     D +   + + L+                    
Sbjct: 217 VWSFGVLLWELMTR--------GAPPYPDVNTFDITVYLL-------------------- 248

Query: 356 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 412
               +R+ + ++                      E ++       E RP+  + +  
Sbjct: 249 --QGRRLLQPEYCP----------------DPLYEVMLKCWHPKAEMRPSFSELVSR 287

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (159), Expect = 2e-12
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDTRTSS----YVALKIQKSAA--QFAQAALHEIEVLSAVA 90
               Q+ +G G+F  V+      +S      VA+K  K+    +     L E  ++    
Sbjct: 8   CVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQF- 66

Query: 91  DGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICK 150
                +   +IRL           + + ++ E++ +  L      +     + ++  + +
Sbjct: 67  -----SHHNIIRLEGVISK----YKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLR 117

Query: 151 YILTGLDYLHRELGIIHTDLKPENILL 177
            I  G+ YL   +  +H DL   NIL+
Sbjct: 118 GIAAGMKYLAN-MNYVHRDLAARNILV 143

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 1e-06
 Identities = 24/175 (13%), Positives = 43/175 (24%), Gaps = 52/175 (29%)

Query: 243 KPERCLDGIDMRCKVVDFGNAC------RANKQFAEEIQTRQYRAPEVILRAGYSFSVDM 296
                L   ++ CKV DFG +        A    +      ++ APE I    ++ + D+
Sbjct: 137 AARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDV 196

Query: 297 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 356
           WSF    +E+ T                E     +M+ I    R                
Sbjct: 197 WSFGIVMWEVMTYGERP---------YWELSNHEVMKAINDGFR---------------- 231

Query: 357 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ 411
                                            + ++        +RP     + 
Sbjct: 232 ---------------------LPTPMDCPSAIYQLMMQCWQQERARRPKFADIVS 265

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (156), Expect = 4e-12
 Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 31/163 (19%)

Query: 37  RYIAQRKLGWGQFSIVWLAYD-----TRTSSYVALKI--QKSAAQFAQAALHEIEVLSAV 89
           R    + LG G F  V  A       T T   VA+K+  + +     +A + E+++L   
Sbjct: 14  RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH- 72

Query: 90  ADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKG--------- 139
                 +   V+ L+         G  L +++EF    +L   ++  R +          
Sbjct: 73  ----IGHHLNVVNLLGACTK---PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPED 125

Query: 140 -----LELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
                L L  +      +  G+++L      IH DL   NILL
Sbjct: 126 LYKDFLTLEHLICYSFQVAKGMEFLA-SRKCIHRDLAARNILL 167

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 3e-06
 Identities = 26/175 (14%), Positives = 45/175 (25%), Gaps = 50/175 (28%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ-----TRQYRAPEVILRAGYSFSVDMW 297
                L       K+ DFG A    K      +       ++ APE I    Y+   D+W
Sbjct: 161 AARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVW 220

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           SF    +E+ +      P                   + +  R                 
Sbjct: 221 SFGVLLWEIFSLGASPYP--------GVKIDEEFCRRLKEGTR----------------- 255

Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 412
                                R  +    E  + ++      P +RPT  + ++H
Sbjct: 256 --------------------MRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH 290

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 61.7 bits (149), Expect = 8e-12
 Identities = 24/138 (17%), Positives = 48/138 (34%), Gaps = 9/138 (6%)

Query: 42  RKLGWGQFSIVWLAYDTRTSSYVALKIQK-SAAQFAQAALHEIEVLSAVADGDPSNEKCV 100
           + +G G+ S V+  Y         +K  K     F +            +     + +  
Sbjct: 6   KLMGEGKESAVFNCYS-EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNE 64

Query: 101 IRLIDHFKHAGPNGQHLCMVLEFLGDSLL-RLIKYSRYKGLELNKVREICKYILTGLDYL 159
            R +   +        +  V  + G+++L  LI       + +    E+   IL  +   
Sbjct: 65  FRALQKLQGL-----AVPKVYAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKF 119

Query: 160 HRELGIIHTDLKPENILL 177
           +   GI+H DL   N+L+
Sbjct: 120 YHR-GIVHGDLSQYNVLV 136

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.8 bits (149), Expect = 3e-11
 Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 41/171 (23%)

Query: 37  RYIAQRKLGWGQFSIVWLAYDT-----RTSSYVALKI--QKSAAQFAQAALHEIEVLSAV 89
                R +G G F  V+ A           + VA+K+  ++++A        E  +++  
Sbjct: 14  NIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEF 73

Query: 90  ADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIK--------------- 133
                 +   +++L+         G+ +C++ E++    L   ++               
Sbjct: 74  ------DNPNIVKLLGVCAV----GKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDL 123

Query: 134 -------YSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 177
                        L   +   I + +  G+ YL      +H DL   N L+
Sbjct: 124 STRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER-KFVHRDLATRNCLV 173

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.8 bits (118), Expect = 3e-07
 Identities = 22/174 (12%), Positives = 40/174 (22%), Gaps = 51/174 (29%)

Query: 243 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ-----YRAPEVILRAGYSFSVDMW 297
               CL G +M  K+ DFG +         +          +  PE I    Y+   D+W
Sbjct: 167 ATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVW 226

Query: 298 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 357
           ++    +E+ +         G        H  ++  +                       
Sbjct: 227 AYGVVLWEIFSY--------GLQPYYGMAHEEVIYYVRDGNILAC--------------- 263

Query: 358 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ 411
                                   E    E    +       P  RP+     +
Sbjct: 264 -----------------------PENCPLELYNLMRLCWSKLPADRPSFCSIHR 294

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	447
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.85
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	97.88
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	97.2
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.0
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	95.77
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	95.36
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	94.66

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-55  Score=416.45  Aligned_cols=251  Identities=25%  Similarity=0.435  Sum_probs=212.9

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|++.+.||+|+||+||+|++..+++.||+|++....    ...+.+.+|+++++.+      +||||+++++++.+. 
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l------~hpnIv~~~~~~~~~-   78 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL------RHPNILRLYGYFHDA-   78 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTC------CCTTBCCEEEEEECS-
T ss_pred             hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhc------CCCCCCeEEEEEEEC-
Confidence            57999999999999999999999999999999886433    2345788999999999      899999999999854 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                         ..+|+||||| +++|.+.+...  ..+++..++.++.||+.||+|||++ ||+||||||+|||+             
T Consensus        79 ---~~~~ivmEy~~~g~L~~~l~~~--~~l~e~~~~~i~~qi~~al~~lH~~-~ivHrDiKp~Nill-------------  139 (263)
T d2j4za1          79 ---TRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCHSK-RVIHRDIKPENLLL-------------  139 (263)
T ss_dssp             ---SEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEE-------------
T ss_pred             ---CEEEEEEeecCCCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHC-Ceeeeeecccccee-------------
Confidence               6899999999 88999988754  3599999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-  269 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-  269 (447)
                                                                                 +.++.+||+|||+|...... 
T Consensus       140 -----------------------------------------------------------~~~~~~kl~DFG~a~~~~~~~  160 (263)
T d2j4za1         140 -----------------------------------------------------------GSAGELKIADFGWSVHAPSSR  160 (263)
T ss_dssp             -----------------------------------------------------------CTTSCEEECCCCSCSCCCCCC
T ss_pred             -----------------------------------------------------------cCCCCEeecccceeeecCCCc
Confidence                                                                       44677999999999765543 


Q ss_pred             cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          270 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      ....+||+.|+|||++.+..|+.++|||||||++|+|++|+.||.+.+      .......                   
T Consensus       161 ~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~------~~~~~~~-------------------  215 (263)
T d2j4za1         161 RTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANT------YQETYKR-------------------  215 (263)
T ss_dssp             CEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSS------HHHHHHH-------------------
T ss_pred             ccccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCC------HHHHHHH-------------------
Confidence            344579999999999999999999999999999999999999997542      1111111                   


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                             +....+.++..+++++.+||.+||+.||++|||++|+|+||||+..+
T Consensus       216 -----------------------i~~~~~~~p~~~s~~~~~li~~~L~~dp~~R~t~~eil~hp~~~~~s  262 (263)
T d2j4za1         216 -----------------------ISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANS  262 (263)
T ss_dssp             -----------------------HHTTCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTCHHHHHHC
T ss_pred             -----------------------HHcCCCCCCccCCHHHHHHHHHHccCCHhHCcCHHHHHcCcCcCCcC
Confidence                                   11222335556678999999999999999999999999999998643

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-53  Score=412.48  Aligned_cols=258  Identities=29%  Similarity=0.482  Sum_probs=213.6

Q ss_pred             cccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceeeeecc
Q 013220           27 VRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVIRLID  105 (447)
Q Consensus        27 ~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~  105 (447)
                      |..|+.-  ++|++.++||+|+||+||+|++..+++.||||+++... ...+.+.+|+++++.+      +||||+++++
T Consensus        13 ~~~~dp~--~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l------~HpnIv~~~~   84 (293)
T d1yhwa1          13 VSVGDPK--KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMREN------KNPNIVNYLD   84 (293)
T ss_dssp             SBSSCTT--TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHC------CCTTBCCEEE
T ss_pred             CCCCCcc--cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhC------CCCCEeeEeE
Confidence            3455542  68999999999999999999999999999999876543 3356789999999999      8999999999


Q ss_pred             cccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCC
Q 013220          106 HFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       106 ~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~  184 (447)
                      +|...    +.+|+||||| +++|.+++..   ..+++..++.++.||+.||+|||++ ||+||||||+|||+       
T Consensus        85 ~~~~~----~~~~ivmEy~~gg~L~~~~~~---~~l~~~~~~~i~~qi~~aL~yLH~~-~iiHrDiKp~NILl-------  149 (293)
T d1yhwa1          85 SYLVG----DELWVVMEYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHSN-QVIHRDIKSDNILL-------  149 (293)
T ss_dssp             EEEET----TEEEEEEECCTTCBHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEE-------
T ss_pred             EEEEC----CEEEEEEEecCCCcHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHHHC-CCcccCCcHHHeEE-------
Confidence            99864    6899999999 8899887754   3599999999999999999999996 99999999999999       


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                       +.++.+||+|||+|.
T Consensus       150 -----------------------------------------------------------------~~~~~vkl~DFG~a~  164 (293)
T d1yhwa1         150 -----------------------------------------------------------------GMDGSVKLTDFGFCA  164 (293)
T ss_dssp             -----------------------------------------------------------------CTTCCEEECCCTTCE
T ss_pred             -----------------------------------------------------------------CCCCcEeeccchhhe
Confidence                                                                             345779999999997


Q ss_pred             cccc---ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          265 RANK---QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       265 ~~~~---~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                      ....   .....+||+.|+|||++.+..|+.++|||||||++|+|++|..||.+.+      ....+..+... +..   
T Consensus       165 ~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~------~~~~~~~~~~~-~~~---  234 (293)
T d1yhwa1         165 QITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNEN------PLRALYLIATN-GTP---  234 (293)
T ss_dssp             ECCSTTCCBCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSC------HHHHHHHHHHH-CSC---
T ss_pred             eeccccccccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCC------HHHHHHHHHhC-CCC---
Confidence            6532   2345579999999999999999999999999999999999999997542      22222222111 000   


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccc
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~  417 (447)
                                                         ....+..+++.+.+||.+||+.||++|||++|+|+||||+.
T Consensus       235 -----------------------------------~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~Hp~~~~  275 (293)
T d1yhwa1         235 -----------------------------------ELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFLKI  275 (293)
T ss_dssp             -----------------------------------CCSSGGGSCHHHHHHHHHHTCSSTTTSCCHHHHTTCGGGGG
T ss_pred             -----------------------------------CCCCcccCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhCC
Confidence                                               11233456778999999999999999999999999999985

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-52  Score=418.77  Aligned_cols=329  Identities=44%  Similarity=0.848  Sum_probs=270.8

Q ss_pred             ccccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCC-----Ccc
Q 013220           24 YHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPS-----NEK   98 (447)
Q Consensus        24 ~~~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~-----~~~   98 (447)
                      ||||.+|+.++++||++.++||+|+||+||+|++..+++.||||+++.+....+.+.+|+++++.+.+....     .|+
T Consensus         1 ~~p~~~g~~~~~~rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~   80 (362)
T d1q8ya_           1 YHPAFKGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGAN   80 (362)
T ss_dssp             CCCCCTTCEETTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHT
T ss_pred             CCCCCCCCCccCCcEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccccchHHHHHHHHHHHHhcchhhhhhhhcCcC
Confidence            899999999998999999999999999999999999999999999998877777889999999999876532     578


Q ss_pred             eeeeecccccccCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEee
Q 013220           99 CVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV  178 (447)
Q Consensus        99 ~Iv~~~~~~~~~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~  178 (447)
                      ||+++++++....+.....++.++++++.............+++..++.++.||+.||+|||+..||+||||||+|||+.
T Consensus        81 ~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~  160 (362)
T d1q8ya_          81 HILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLME  160 (362)
T ss_dssp             TBCCCCEEEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEE
T ss_pred             ceEEEEEEeeeccccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhcCcccccCChhHeeee
Confidence            99999999877644333444444444556665555555567899999999999999999999834999999999999996


Q ss_pred             ecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEe
Q 013220          179 STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVV  258 (447)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~  258 (447)
                      .....                                                                  .....++++
T Consensus       161 ~~~~~------------------------------------------------------------------~~~~~~kl~  174 (362)
T d1q8ya_         161 IVDSP------------------------------------------------------------------ENLIQIKIA  174 (362)
T ss_dssp             EEETT------------------------------------------------------------------TTEEEEEEC
T ss_pred             ccCcc------------------------------------------------------------------cccceeeEe
Confidence            53110                                                                  112458999


Q ss_pred             ecCcccccccccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCC
Q 013220          259 DFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKM  338 (447)
Q Consensus       259 Dfg~a~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~  338 (447)
                      |||.+..........+||+.|+|||++.+..++.++||||+||++++|++|+.||...+..........+...+..+|..
T Consensus       175 dfg~s~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~~~lg~~  254 (362)
T d1q8ya_         175 DLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGEL  254 (362)
T ss_dssp             CCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSC
T ss_pred             ecccccccccccccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHHHHHHHhCCC
Confidence            99999877766677789999999999999999999999999999999999999999887666667888889999999999


Q ss_pred             CHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          339 PRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                      +..+.........++........+.................+....++++.|||.+||++||++||||+|+|+||||++.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~Hp~f~~~  334 (362)
T d1q8ya_         255 PSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDT  334 (362)
T ss_dssp             CHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCGGGTTC
T ss_pred             CHHHhhcccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhcCcccCCC
Confidence            99988887777788877777777777777778888888888888999999999999999999999999999999999954

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-54  Score=423.04  Aligned_cols=294  Identities=20%  Similarity=0.325  Sum_probs=211.4

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      +++|++.++||+|+||+||+|++..+++.||+|+++..  ......+.+|+++|+.+      +|||||+++++|.+.  
T Consensus         5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l------~HpnIv~l~~~~~~~--   76 (322)
T d1s9ja_           5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHEC------NSPYIVGFYGAFYSD--   76 (322)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGC------CCTTBCCEEEEEECS--
T ss_pred             ccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhC------CCCCCCcEEEEEEEC--
Confidence            47899999999999999999999999999999988643  33356788999999998      799999999999854  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                        .++|+||||| +++|.+++...  ..+++..++.++.|++.||.|||++.||+||||||+|||+              
T Consensus        77 --~~~~iVmEy~~gg~L~~~l~~~--~~l~~~~~~~~~~qil~aL~yLH~~~~IiHRDiKP~NILl--------------  138 (322)
T d1s9ja_          77 --GEISICMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILV--------------  138 (322)
T ss_dssp             --SEEEEEEECCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEE--------------
T ss_pred             --CEEEEEEEcCCCCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHhCCEEccccCHHHeeE--------------
Confidence              6899999999 88999988754  3499999999999999999999973399999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc-cc
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-QF  270 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~-~~  270 (447)
                                                                                +.++.+||+|||+|..... ..
T Consensus       139 ----------------------------------------------------------~~~~~vkl~DFGla~~~~~~~~  160 (322)
T d1s9ja_         139 ----------------------------------------------------------NSRGEIKLCDFGVSGQLIDSMA  160 (322)
T ss_dssp             ----------------------------------------------------------CTTCCEEECCCCCCHHHHHHTC
T ss_pred             ----------------------------------------------------------CCCCCEEEeeCCCccccCCCcc
Confidence                                                                      3467899999999975443 33


Q ss_pred             ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          271 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      ...+||+.|+|||++.+.+|+.++|||||||++|+|++|+.||.+.+     .............|..............
T Consensus       161 ~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (322)
T d1s9ja_         161 NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPD-----AKELELMFGCQVEGDAAETPPRPRTPGR  235 (322)
T ss_dssp             ---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCC-----TTHHHHHC--------------------
T ss_pred             ccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC-----HHHHHHHHHHHhcCCcccCCcccccccc
Confidence            45689999999999999999999999999999999999999998764     2222222222222222211000000000


Q ss_pred             chhcccchhhhhhhcccC-chhHHhhhhc-CCCh-hhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          351 DYFDRHGDLKRIRRLKFW-SLDRLLVDKY-RFSE-TDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~-~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                      .......  ......... ....+....+ ..+. ..+.++.+||.+||+.||++||||+|+|+||||+...
T Consensus       236 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~L~Hpf~~~~~  305 (322)
T d1s9ja_         236 PLSSYGM--DSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSD  305 (322)
T ss_dssp             ------------CCCCHHHHHHHHHTSCCCCCCBTTBCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHHHH
T ss_pred             ccccccc--ccccchhHHHHHhhhhccCCccCccccCCHHHHHHHHHHcCCChhHCcCHHHHhhCHhhCcCC
Confidence            0000000  000000000 0111111111 1221 2467899999999999999999999999999998644

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-53  Score=404.36  Aligned_cols=261  Identities=25%  Similarity=0.375  Sum_probs=209.8

Q ss_pred             cCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecc
Q 013220           29 VGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLID  105 (447)
Q Consensus        29 ~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~  105 (447)
                      +|...++..|++.++||+|+||+||+|++..++..||+|++....   ...+.+.+|+++++.+      +|||||++++
T Consensus         2 ~g~~~~gry~~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l------~HpnIv~~~~   75 (270)
T d1t4ha_           2 VGMSNDGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGL------QHPNIVRFYD   75 (270)
T ss_dssp             CEECTTSCEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTC------CCTTBCCEEE
T ss_pred             CCcCCCCCEEEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhC------CCCCeeeEEE
Confidence            355555433478899999999999999999999999999876542   3356788999999999      8999999999


Q ss_pred             cccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCC--cccccCCCCCeEeeecCC
Q 013220          106 HFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELG--IIHTDLKPENILLVSTID  182 (447)
Q Consensus       106 ~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~g--IiH~Dikp~Nill~~~~~  182 (447)
                      +|.....+...+|+||||| +++|.+++...  ..+++..++.++.||+.||+|||++ +  |+||||||+|||+..   
T Consensus        76 ~~~~~~~~~~~~~ivmE~~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~gl~yLH~~-~~~IiHrDiKp~NILl~~---  149 (270)
T d1t4ha_          76 SWESTVKGKKCIVLVTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITG---  149 (270)
T ss_dssp             EEEEESSSCEEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCSCCCGGGEEESS---
T ss_pred             EEeeccccCCEEEEEEeCCCCCcHHHHHhcc--ccccHHHHHHHHHHHHHHHHHHHHC-CCCEEeCCcChhhceeeC---
Confidence            9987655667899999999 88999988754  4599999999999999999999996 8  999999999999932   


Q ss_pred             CCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCc
Q 013220          183 PSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGN  262 (447)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~  262 (447)
                                                                                          ..+.+||+|||+
T Consensus       150 --------------------------------------------------------------------~~~~~Kl~DFGl  161 (270)
T d1t4ha_         150 --------------------------------------------------------------------PTGSVKIGDLGL  161 (270)
T ss_dssp             --------------------------------------------------------------------TTSCEEECCTTG
T ss_pred             --------------------------------------------------------------------CCCCEEEeecCc
Confidence                                                                                245799999999


Q ss_pred             ccccccc-cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHh-CCCCH
Q 013220          263 ACRANKQ-FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI-GKMPR  340 (447)
Q Consensus       263 a~~~~~~-~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~-g~~~~  340 (447)
                      |...... ....+||+.|+|||++.+ .|+.++|||||||++|+|++|+.||....      +...+..  .+. +..|.
T Consensus       162 a~~~~~~~~~~~~GT~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g~~Pf~~~~------~~~~~~~--~i~~~~~~~  232 (270)
T d1t4ha_         162 ATLKRASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQ------NAAQIYR--RVTSGVKPA  232 (270)
T ss_dssp             GGGCCTTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCS------SHHHHHH--HHTTTCCCG
T ss_pred             ceeccCCccCCcccCccccCHHHhCC-CCCCcCchhhHHHHHHHHHHCCCCCCCcc------cHHHHHH--HHHcCCCCc
Confidence            9754433 345689999999999865 59999999999999999999999996542      1111111  111 11111


Q ss_pred             HhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccc
Q 013220          341 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  416 (447)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~  416 (447)
                                                            .++...++++.+||.+||+.||++|||++|+|+||||+
T Consensus       233 --------------------------------------~~~~~~~~~~~~li~~~l~~dp~~R~s~~ell~Hp~fk  270 (270)
T d1t4ha_         233 --------------------------------------SFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQ  270 (270)
T ss_dssp             --------------------------------------GGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGC
T ss_pred             --------------------------------------ccCccCCHHHHHHHHHHccCCHhHCcCHHHHhCCcccC
Confidence                                                  11223456789999999999999999999999999996

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-53  Score=408.76  Aligned_cols=252  Identities=24%  Similarity=0.324  Sum_probs=204.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      ++|++.++||+|+||+||+|++..+++.||||++....  ...+.+.+|+++++.+      +||||+++++++...   
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l------~HpnIv~~~~~~~~~---   75 (271)
T d1nvra_           5 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKML------NHENVVKFYGHRREG---   75 (271)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTC------CCTTBCCEEEEEEET---
T ss_pred             cceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhC------CCCCEeeEeeeeccC---
Confidence            68999999999999999999999999999999876442  3345788999999999      899999999999864   


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                       ..+|+||||| +++|.+.+...  ..+++..++.++.||+.||+|||++ ||+||||||+|||+               
T Consensus        76 -~~~~ivmEy~~gg~L~~~l~~~--~~l~e~~~~~i~~qi~~al~ylH~~-~IiHrDiKp~NILl---------------  136 (271)
T d1nvra_          76 -NIQYLFLEYCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYLHGI-GITHRDIKPENLLL---------------  136 (271)
T ss_dssp             -TEEEEEEECCTTEEGGGGSBTT--TBCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEE---------------
T ss_pred             -ceeEEEEeccCCCcHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHc-CCccCcccHHHEEE---------------
Confidence             6899999999 88998887543  4599999999999999999999996 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc----
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----  268 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~----  268 (447)
                                                                               +..+.+||+|||+|.....    
T Consensus       137 ---------------------------------------------------------~~~~~~KL~DFG~a~~~~~~~~~  159 (271)
T d1nvra_         137 ---------------------------------------------------------DERDNLKISDFGLATVFRYNNRE  159 (271)
T ss_dssp             ---------------------------------------------------------CTTCCEEECCCTTCEECEETTEE
T ss_pred             ---------------------------------------------------------CCCCCEEEccchhheeeccCCcc
Confidence                                                                     3456799999999975432    


Q ss_pred             -ccccCCCCCCccChHHhhcCCC-CccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCC
Q 013220          269 -QFAEEIQTRQYRAPEVILRAGY-SFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  346 (447)
Q Consensus       269 -~~~~~~gt~~y~aPE~l~~~~~-~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  346 (447)
                       .....+||+.|+|||++.+..+ +.++|||||||++|+|++|+.||.....     ........ .  ....       
T Consensus       160 ~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~-----~~~~~~~~-~--~~~~-------  224 (271)
T d1nvra_         160 RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSD-----SCQEYSDW-K--EKKT-------  224 (271)
T ss_dssp             CCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSST-----TSHHHHHH-H--TTCT-------
T ss_pred             ccccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCCh-----HHHHHHHH-h--cCCC-------
Confidence             2345689999999999998876 5789999999999999999999976531     11111111 0  0000       


Q ss_pred             CCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccc
Q 013220          347 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~  417 (447)
                                                    .......+++++.+||.+||+.||++|||++|+|+||||+.
T Consensus       225 ------------------------------~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~hpwf~~  265 (271)
T d1nvra_         225 ------------------------------YLNPWKKIDSAPLALLHKILVENPSARITIPDIKKDRWYNK  265 (271)
T ss_dssp             ------------------------------TSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTTTTC
T ss_pred             ------------------------------CCCccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCHhhCc
Confidence                                          00011344678899999999999999999999999999985

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-52  Score=406.23  Aligned_cols=251  Identities=27%  Similarity=0.415  Sum_probs=210.4

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|++.+.||+|+||+||+|++..+++.||||++....    ...+.+.+|+++++.+      +||||++++++|.+. 
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l------~HpnIv~l~~~~~~~-   80 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL------DHPFFVKLYFTFQDD-   80 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHC------CSTTBCCEEEEEECS-
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHc------CCCCeeEEEEEEEEC-
Confidence            57999999999999999999999999999999987543    2345788999999999      899999999998853 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                         ..+|+||||| +++|.+++...  ..+++..++.++.|++.||+|||++ ||+||||||+|||+             
T Consensus        81 ---~~~~ivmEy~~gg~L~~~~~~~--~~l~e~~~~~~~~qi~~al~ylH~~-~iiHrDiKp~NIll-------------  141 (288)
T d1uu3a_          81 ---EKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFYTAEIVSALEYLHGK-GIIHRDLKPENILL-------------  141 (288)
T ss_dssp             ---SEEEEEECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEE-------------
T ss_pred             ---CEEEEEEEccCCCCHHHhhhcc--CCCCHHHHHHHHHHHHHHHHhhccc-cEEcCcCCcccccc-------------
Confidence               7899999999 88999887654  4599999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-  269 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-  269 (447)
                                                                                 +.++.+||+|||+|+..... 
T Consensus       142 -----------------------------------------------------------~~~~~vkl~DFG~a~~~~~~~  162 (288)
T d1uu3a_         142 -----------------------------------------------------------NEDMHIQITDFGTAKVLSPES  162 (288)
T ss_dssp             -----------------------------------------------------------CTTSCEEECCCTTCEECC---
T ss_pred             -----------------------------------------------------------CCCceEEecccccceecccCC
Confidence                                                                       44678999999999765421 


Q ss_pred             ----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          270 ----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       270 ----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                          ....+||+.|+|||++.+..|+.++|||||||++|+|++|..||.+.+      ......                
T Consensus       163 ~~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~------~~~~~~----------------  220 (288)
T d1uu3a_         163 KQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGN------EYLIFQ----------------  220 (288)
T ss_dssp             -------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHH----------------
T ss_pred             cccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcC------HHHHHH----------------
Confidence                234579999999999999999999999999999999999999997542      111111                


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHH------HhcCccccccc
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQ------CLQHPWLSLRN  419 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~e------lL~hp~f~~~~  419 (447)
                                                .+....+.++..+++.+.+||.+||+.||++|||++|      +++||||+..+
T Consensus       221 --------------------------~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~t~~e~~~~~~i~~Hpff~~i~  274 (288)
T d1uu3a_         221 --------------------------KIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVT  274 (288)
T ss_dssp             --------------------------HHHTTCCCCCTTCCHHHHHHHHTTSCSSGGGSTTSGGGTCHHHHHTSGGGTTCC
T ss_pred             --------------------------HHHcCCCCCCccCCHHHHHHHHHHccCCHhHCcCHHHHcCCHHHHcCCccCCCC
Confidence                                      1222233455667789999999999999999999998      57899998764

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=3.5e-52  Score=413.94  Aligned_cols=265  Identities=24%  Similarity=0.397  Sum_probs=217.5

Q ss_pred             cCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh-HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           29 VGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA-AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        29 ~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      -++++  ++|++.++||+|+||+||+|++..+++.||||++... ....+.+.+|+++++.+      +|||||+++++|
T Consensus        21 ~~~il--~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l------~HpnIv~~~~~~   92 (350)
T d1koaa2          21 HDHVL--DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVL------RHPTLVNLHDAF   92 (350)
T ss_dssp             CSCGG--GTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHT------CCTTBCCEEEEE
T ss_pred             CCCCc--cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhC------CCCCCCcEEEEE
Confidence            35566  5899999999999999999999999999999987654 33456788999999999      799999999999


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCC
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKD  186 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~  186 (447)
                      .+.    ..+|+||||| |++|.+.+.... ..+++..++.++.||+.||+|||++ ||+||||||+|||+..       
T Consensus        93 ~~~----~~~~ivmE~~~gg~L~~~l~~~~-~~l~e~~~~~i~~qi~~aL~ylH~~-~iiHrDiKp~NIll~~-------  159 (350)
T d1koaa2          93 EDD----NEMVMIYEFMSGGELFEKVADEH-NKMSEDEAVEYMRQVCKGLCHMHEN-NYVHLDLKPENIMFTT-------  159 (350)
T ss_dssp             EET----TEEEEEECCCCSCBHHHHHTCTT-SCBCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEESS-------
T ss_pred             EEC----CEEEEEEEcCCCCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhc-CCeeeeechhHeeecc-------
Confidence            854    7899999999 889998885432 4599999999999999999999996 9999999999999943       


Q ss_pred             cccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccc
Q 013220          187 PIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA  266 (447)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~  266 (447)
                                                                                     +..+.+||+|||+|...
T Consensus       160 ---------------------------------------------------------------~~~~~vkL~DFG~a~~~  176 (350)
T d1koaa2         160 ---------------------------------------------------------------KRSNELKLIDFGLTAHL  176 (350)
T ss_dssp             ---------------------------------------------------------------TTSCCEEECCCTTCEEC
T ss_pred             ---------------------------------------------------------------CCCCeEEEeecchheec
Confidence                                                                           23467999999999765


Q ss_pred             ccc--cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhh
Q 013220          267 NKQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  344 (447)
Q Consensus       267 ~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (447)
                      ...  ....+||+.|+|||++.+..|+.++|||||||++|+|++|+.||.+.+      ....+..+.......+..   
T Consensus       177 ~~~~~~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~------~~~~~~~i~~~~~~~~~~---  247 (350)
T d1koaa2         177 DPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGEN------DDETLRNVKSCDWNMDDS---  247 (350)
T ss_dssp             CTTSCEEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHTCCCSCCG---
T ss_pred             ccccccceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCC------HHHHHHHHHhCCCCCCcc---
Confidence            533  334589999999999999999999999999999999999999997652      333333333221111110   


Q ss_pred             CCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          345 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                                                         ....+++++.+||.+||+.||++|||++|+|+||||+..+..
T Consensus       248 -----------------------------------~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~hp~~~~~~~~  289 (350)
T d1koaa2         248 -----------------------------------AFSGISEDGKDFIRKLLLADPNTRMTIHQALEHPWLTPGNAP  289 (350)
T ss_dssp             -----------------------------------GGGGCCHHHHHHHHHHCCSSGGGSCCHHHHHHSTTTSCTTCC
T ss_pred             -----------------------------------cccCCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCCCCCC
Confidence                                               113356789999999999999999999999999999976543

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-52  Score=403.74  Aligned_cols=254  Identities=27%  Similarity=0.427  Sum_probs=209.3

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh-HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA-AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      +.|++.++||+|+||+||+|++..++..||||++... ....+.+.+|+++++.+      +|||||++++++...    
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l------~HpnIv~l~~~~~~~----   81 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASC------DHPNIVKLLDAFYYE----   81 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHC------CCTTBCCEEEEEEET----
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhC------CCCCCCeEEEEEeeC----
Confidence            5799999999999999999999999999999987653 34456888999999999      899999999999854    


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ..+|+||||| +++|.+++... ...+++..++.++.||+.||+|||++ ||+||||||+|||+                
T Consensus        82 ~~~~lvmEy~~~g~L~~~~~~~-~~~l~e~~~~~i~~qi~~gL~ylH~~-~ivHrDiKp~NIll----------------  143 (288)
T d2jfla1          82 NNLWILIEFCAGGAVDAVMLEL-ERPLTESQIQVVCKQTLDALNYLHDN-KIIHRDLKAGNILF----------------  143 (288)
T ss_dssp             TEEEEEEECCTTEEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEE----------------
T ss_pred             CeEEEEEecCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHC-CEEEeecChhheeE----------------
Confidence            6899999999 88998877543 24699999999999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc---cc
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QF  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~---~~  270 (447)
                                                                              +.++.+||+|||+|.....   ..
T Consensus       144 --------------------------------------------------------~~~~~~Kl~DFG~a~~~~~~~~~~  167 (288)
T d2jfla1         144 --------------------------------------------------------TLDGDIKLADFGVSAKNTRTIQRR  167 (288)
T ss_dssp             --------------------------------------------------------CTTSCEEECCCTTCEECHHHHHHH
T ss_pred             --------------------------------------------------------CCCCCEEEEechhhhccCCCcccc
Confidence                                                                    4456799999999965432   23


Q ss_pred             ccCCCCCCccChHHhh-----cCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          271 AEEIQTRQYRAPEVIL-----RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~-----~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                      ...+||+.|+|||++.     +..|+.++|||||||++|+|++|..||.+.+      ....+..+..  +..+      
T Consensus       168 ~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~------~~~~~~~i~~--~~~~------  233 (288)
T d2jfla1         168 DSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELN------PMRVLLKIAK--SEPP------  233 (288)
T ss_dssp             TCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSC------GGGHHHHHHH--SCCC------
T ss_pred             cccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCC------HHHHHHHHHc--CCCC------
Confidence            4568999999999984     4568999999999999999999999997653      2222222211  0000      


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                                                     ....+...++++.+||.+||+.||++|||++|+|+||||+..
T Consensus       234 -------------------------------~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~ell~hp~~~~~  275 (288)
T d2jfla1         234 -------------------------------TLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQHPFVTVD  275 (288)
T ss_dssp             -------------------------------CCSSGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTSGGGCCC
T ss_pred             -------------------------------CCCccccCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCCC
Confidence                                           011234557789999999999999999999999999999853

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-51  Score=409.25  Aligned_cols=303  Identities=30%  Similarity=0.467  Sum_probs=237.0

Q ss_pred             CCccccccCcc---ccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCC
Q 013220           22 GGYHAVRVGDL---FNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPS   95 (447)
Q Consensus        22 ~~~~~~~~g~~---~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~   95 (447)
                      +||++..+|.+   +. ++|++.++||+|+||+||+|++..+++.||||+++..   ....+.+.+|+++|+.+      
T Consensus         2 ~~~~~~~~~~~~~~~~-~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l------   74 (346)
T d1cm8a_           2 SGFYRQEVTKTAWEVR-AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHM------   74 (346)
T ss_dssp             CSBCCEECSSSEECCB-SSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHC------
T ss_pred             CCcEEEeccCceeecC-CcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhc------
Confidence            68999999997   53 8999999999999999999999999999999998643   34456788999999999      


Q ss_pred             CcceeeeecccccccCC--CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCC
Q 013220           96 NEKCVIRLIDHFKHAGP--NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPE  173 (447)
Q Consensus        96 ~~~~Iv~~~~~~~~~~~--~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~  173 (447)
                      +|+|||+++++|.....  ...++|+|||||+.++..++..   ..+++..++.++.||+.||+|||++ ||+||||||+
T Consensus        75 ~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~---~~l~~~~~~~~~~qi~~aL~~LH~~-~IiHrDiKp~  150 (346)
T d1cm8a_          75 RHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKH---EKLGEDRIQFLVYQMLKGLRYIHAA-GIIHRDLKPG  150 (346)
T ss_dssp             CBTTBCCCSEEECSCSSTTTCCCCEEEEECCSEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGG
T ss_pred             CCCCeeEEEEEeccCccccccceEEEEEecccccHHHHHHh---ccccHHHHHHHHHHHHHHHHHHHhC-CCcccccCcc
Confidence            78999999999876532  2346899999998888887754   3599999999999999999999996 9999999999


Q ss_pred             CeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCccc
Q 013220          174 NILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDM  253 (447)
Q Consensus       174 Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (447)
                      |||+                                                                        +.+.
T Consensus       151 NIL~------------------------------------------------------------------------~~~~  158 (346)
T d1cm8a_         151 NLAV------------------------------------------------------------------------NEDC  158 (346)
T ss_dssp             GEEE------------------------------------------------------------------------CTTC
T ss_pred             hhhc------------------------------------------------------------------------cccc
Confidence            9999                                                                        4467


Q ss_pred             ceeEeecCcccccccccccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHH
Q 013220          254 RCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMM  332 (447)
Q Consensus       254 ~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~  332 (447)
                      .+|++|||.|...+...+..+||+.|+|||++.+. .++.++|||||||++|+|++|..||.+.      +....+..+.
T Consensus       159 ~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~------~~~~~~~~~~  232 (346)
T d1cm8a_         159 ELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGS------DHLDQLKEIM  232 (346)
T ss_dssp             CEEECCCTTCEECCSSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHH
T ss_pred             ccccccccceeccCCccccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCC------ChHHHHHHHH
Confidence            89999999999888877888999999999999875 5689999999999999999999999876      5778888889


Q ss_pred             HHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          333 ELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       333 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                      ...+..+..+............    ...........+.       ......++.+.+||.+||+.||++||||+|+|+|
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-------~~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~H  301 (346)
T d1cm8a_         233 KVTGTPPAEFVQRLQSDEAKNY----MKGLPELEKKDFA-------SILTNASPLAVNLLEKMLVLDAEQRVTAGEALAH  301 (346)
T ss_dssp             HHHCCCCHHHHHTCSCHHHHHH----HHHSCCCCCCCGG-------GTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             hccCCCcHHHHhhhcchhhhhh----hccCCcccccchH-------HhccCCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence            9999998776533322111000    0000000000011       1223456788999999999999999999999999


Q ss_pred             cccccccCCccc
Q 013220          413 PWLSLRNSTRDE  424 (447)
Q Consensus       413 p~f~~~~~~~~~  424 (447)
                      |||+..+....+
T Consensus       302 p~f~~~~~~~~~  313 (346)
T d1cm8a_         302 PYFESLHDTEDE  313 (346)
T ss_dssp             GGGTTTC-----
T ss_pred             hhhCcCCCcccc
Confidence            999987654443

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.4e-52  Score=407.21  Aligned_cols=251  Identities=27%  Similarity=0.425  Sum_probs=215.9

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|++.++||+|+||+||+|++..+++.||||+++...    ...+.+.+|+++++.+      +||||+++++++... 
T Consensus         4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l------~HpnIv~~~~~~~~~-   76 (316)
T d1fota_           4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIV------THPFIIRMWGTFQDA-   76 (316)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSC------CBTTBCCEEEEEECS-
T ss_pred             hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhc------cCcChhheeeeEeeC-
Confidence            57999999999999999999999999999999987543    2346788999999999      899999999999854 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                         ..+|+||||| |+++...+...  ..+++..++.++.||+.||+|||++ ||+||||||+|||+             
T Consensus        77 ---~~~~ivmE~~~gg~l~~~~~~~--~~~~~~~~~~~~~qi~~al~~lH~~-~iiHrDiKp~NILl-------------  137 (316)
T d1fota_          77 ---QQIFMIMDYIEGGELFSLLRKS--QRFPNPVAKFYAAEVCLALEYLHSK-DIIYRDLKPENILL-------------  137 (316)
T ss_dssp             ---SEEEEEECCCCSCBHHHHHHHT--SSCCHHHHHHHHHHHHHHHHHHHTT-TEECCCCCGGGEEE-------------
T ss_pred             ---CeeeeEeeecCCcccccccccc--ccccccHHHHHHHHHHHhhhhhccC-cEEccccCchheeE-------------
Confidence               7999999999 88888877654  3488999999999999999999997 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF  270 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~  270 (447)
                                                                                 +.++.+||+|||+|.......
T Consensus       138 -----------------------------------------------------------~~~g~vkL~DFG~a~~~~~~~  158 (316)
T d1fota_         138 -----------------------------------------------------------DKNGHIKITDFGFAKYVPDVT  158 (316)
T ss_dssp             -----------------------------------------------------------CTTSCEEECCCSSCEECSSCB
T ss_pred             -----------------------------------------------------------cCCCCEEEecCccceEecccc
Confidence                                                                       446789999999998887777


Q ss_pred             ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          271 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      ...+||+.|+|||++.+..|+.++|||||||++|+|++|+.||.+.+      ......                     
T Consensus       159 ~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~------~~~~~~---------------------  211 (316)
T d1fota_         159 YTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSN------TMKTYE---------------------  211 (316)
T ss_dssp             CCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSS------HHHHHH---------------------
T ss_pred             ccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcC------HHHHHH---------------------
Confidence            77899999999999999999999999999999999999999997652      111111                     


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC-----ChHHHhcCccccccc
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRN  419 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp-----ta~elL~hp~f~~~~  419 (447)
                                           .+......++..+++++.++|.+||+.||.+|+     |++++|+||||+..+
T Consensus       212 ---------------------~i~~~~~~~p~~~s~~~~~li~~~L~~dp~~R~~~~r~t~~~il~Hp~f~~i~  264 (316)
T d1fota_         212 ---------------------KILNAELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEVV  264 (316)
T ss_dssp             ---------------------HHHHCCCCCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTSGGGSSCC
T ss_pred             ---------------------HHHcCCCCCCCCCCHHHHHHHHHHhhhCHHhccccchhhHHHHHcCcccccCC
Confidence                                 122223345566678899999999999999996     999999999999753

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.4e-52  Score=406.22  Aligned_cols=257  Identities=30%  Similarity=0.437  Sum_probs=197.1

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      ++|++.+.||+|+||+||+|++..+++.||||++....  .....+.+|+++++.+      +||||++++++|.+    
T Consensus         9 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l------~HpnIv~l~~~~~~----   78 (307)
T d1a06a_           9 DIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKI------KHPNIVALDDIYES----   78 (307)
T ss_dssp             GTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTC------CCTTBCCEEEEEEC----
T ss_pred             cceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhC------CCCCCCcEEEEEEE----
Confidence            67999999999999999999999999999999876543  2235678899999999      89999999999985    


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      ...+|+||||| |++|.+++...  ..+++..+..++.||+.||+|||++ ||+||||||+||++...            
T Consensus        79 ~~~~~lvmE~~~gg~L~~~l~~~--~~l~e~~~~~~~~qi~~al~ylH~~-~iiHrDiKp~Nil~~~~------------  143 (307)
T d1a06a_          79 GGHLYLIMQLVSGGELFDRIVEK--GFYTERDASRLIFQVLDAVKYLHDL-GIVHRDLKPENLLYYSL------------  143 (307)
T ss_dssp             SSEEEEEECCCCSCBHHHHHHTC--SCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEESSS------------
T ss_pred             CCEEEEEEeccCCCcHHHhhhcc--cCCCHHHHHHHHHHHHHHHHhhhhc-eeeeEEecccceeeccc------------
Confidence            36899999999 89999988653  4599999999999999999999996 99999999999999432            


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc--cc
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QF  270 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~--~~  270 (447)
                                                                               +.++.+||+|||+|.....  ..
T Consensus       144 ---------------------------------------------------------~~~~~vkl~DFG~a~~~~~~~~~  166 (307)
T d1a06a_         144 ---------------------------------------------------------DEDSKIMISDFGLSKMEDPGSVL  166 (307)
T ss_dssp             ---------------------------------------------------------STTCCEEECCC------------
T ss_pred             ---------------------------------------------------------CCCceEEEeccceeEEccCCCee
Confidence                                                                     2356799999999976543  23


Q ss_pred             ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          271 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      ...+||+.|+|||++.+..|+.++|||||||++|+|++|..||.+..      .......+.+.....            
T Consensus       167 ~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~------~~~~~~~i~~~~~~~------------  228 (307)
T d1a06a_         167 STACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDEN------DAKLFEQILKAEYEF------------  228 (307)
T ss_dssp             ------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHTTCCCC------------
T ss_pred             eeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCC------HHHHHHHHhccCCCC------------
Confidence            44689999999999999999999999999999999999999997642      222222221100000            


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                                                .......+++++.+||.+||+.||++|||++|+|+||||+..
T Consensus       229 --------------------------~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~hp~~~~~  270 (307)
T d1a06a_         229 --------------------------DSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQHPWIAGD  270 (307)
T ss_dssp             --------------------------CTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHSTTTTSS
T ss_pred             --------------------------CCccccCCCHHHHHHHHHHccCCHhHCcCHHHHhcCHhhCCC
Confidence                                      001223457789999999999999999999999999999853

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=5.7e-52  Score=412.75  Aligned_cols=264  Identities=26%  Similarity=0.409  Sum_probs=216.0

Q ss_pred             ccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccc
Q 013220           28 RVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDH  106 (447)
Q Consensus        28 ~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~  106 (447)
                      .-|.++  ++|++.++||+|+||+||+|++..+++.||||+++... .....+.+|+++++.+      +|||||+++++
T Consensus        23 ~~~~~~--d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l------~HpnIv~~~~~   94 (352)
T d1koba_          23 KQGSVY--DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQL------HHPKLINLHDA   94 (352)
T ss_dssp             BCSCGG--GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTC------CSTTBCCEEEE
T ss_pred             CCCCcc--cceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhC------CCCCCCcEEEE
Confidence            346666  57999999999999999999999999999999876543 3345778899999998      89999999999


Q ss_pred             ccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCC
Q 013220          107 FKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK  185 (447)
Q Consensus       107 ~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~  185 (447)
                      |..    ...+|+||||| |++|.+.+... ...+++..++.++.||+.||+|||++ ||+||||||+|||+..      
T Consensus        95 ~~~----~~~~~ivmE~~~gg~L~~~~~~~-~~~l~e~~~~~i~~qi~~aL~ylH~~-~iiHRDiKp~NILl~~------  162 (352)
T d1koba_          95 FED----KYEMVLILEFLSGGELFDRIAAE-DYKMSEAEVINYMRQACEGLKHMHEH-SIVHLDIKPENIMCET------  162 (352)
T ss_dssp             EEC----SSEEEEEEECCCCCBHHHHTTCT-TCCBCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEESS------
T ss_pred             EEE----CCEEEEEEEcCCCChHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHC-Ceeecccccccccccc------
Confidence            985    37899999999 88998876543 24589999999999999999999996 9999999999999943      


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccc
Q 013220          186 DPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR  265 (447)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~  265 (447)
                                                                                      ...+.+||+|||+|..
T Consensus       163 ----------------------------------------------------------------~~~~~vkL~DFGla~~  178 (352)
T d1koba_         163 ----------------------------------------------------------------KKASSVKIIDFGLATK  178 (352)
T ss_dssp             ----------------------------------------------------------------TTCCCEEECCCTTCEE
T ss_pred             ----------------------------------------------------------------cCCCeEEEeeccccee
Confidence                                                                            2356799999999976


Q ss_pred             cccc--cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhh
Q 013220          266 ANKQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  343 (447)
Q Consensus       266 ~~~~--~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  343 (447)
                      ....  .....||+.|+|||++.+..|+.++|||||||++|+|++|..||.+.+      ....+..+......++.   
T Consensus       179 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~------~~~~~~~i~~~~~~~~~---  249 (352)
T d1koba_         179 LNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGED------DLETLQNVKRCDWEFDE---  249 (352)
T ss_dssp             CCTTSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSS------HHHHHHHHHHCCCCCCS---
T ss_pred             cCCCCceeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHhCCCCCCc---
Confidence            5433  334579999999999999999999999999999999999999997652      33333333321111111   


Q ss_pred             hCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          344 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                         .....+++++.+||.+||+.||++|||++|+|+||||+...
T Consensus       250 -----------------------------------~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~Hp~~~~~~  290 (352)
T d1koba_         250 -----------------------------------DAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPWLKGDH  290 (352)
T ss_dssp             -----------------------------------STTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTSTTTSSCC
T ss_pred             -----------------------------------ccccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhCCCc
Confidence                                               12234577899999999999999999999999999998643

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-51  Score=398.67  Aligned_cols=288  Identities=26%  Similarity=0.413  Sum_probs=225.1

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCC-CeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRT-SSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~-~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      +++|+++++||+|+||+||+|++..+ ++.||||+++...   .....+.+|+++++.+...   +||||++++++|...
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~---~HpnIv~~~~~~~~~   82 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETF---EHPNVVRLFDVCTVS   82 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHT---CCTTBCCEEEEEEEE
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhc---CCCCcceeeeeeccc
Confidence            47999999999999999999999765 6789999876432   2234577899998888543   799999999998643


Q ss_pred             C-CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 G-PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~-~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                      . ....+++++||||.+.+..+........+++..++.++.|++.||+|||++ ||+||||||+|||+            
T Consensus        83 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~-~ivHrDiKp~NILi------------  149 (305)
T d1blxa_          83 RTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH-RVVHRDLKPQNILV------------  149 (305)
T ss_dssp             ECSSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEE------------
T ss_pred             ccccCceEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhC-CEEecCCCccEEEE------------
Confidence            2 244689999999966655555544556799999999999999999999997 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc--
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--  267 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~--  267 (447)
                                                                                  +..+.+||+|||++....  
T Consensus       150 ------------------------------------------------------------~~~~~~kl~dfg~~~~~~~~  169 (305)
T d1blxa_         150 ------------------------------------------------------------TSSGQIKLADFGLARIYSFQ  169 (305)
T ss_dssp             ------------------------------------------------------------CTTCCEEECSCCSCCCCCGG
T ss_pred             ------------------------------------------------------------cCCCCeeecchhhhhhhccc
Confidence                                                                        446789999999986543  


Q ss_pred             cccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          268 KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       268 ~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                      ......+||+.|+|||++.+.+|+.++|||||||++|+|++|+.||.+.      +....+..+.+..|..+........
T Consensus       170 ~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~------~~~~~~~~i~~~~~~~~~~~~~~~~  243 (305)
T d1blxa_         170 MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGS------SDVDQLGKILDVIGLPGEEDWPRDV  243 (305)
T ss_dssp             GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCCCCGGGSCTTC
T ss_pred             ccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCC------CHHHHHHHHHHhhCCCchhcccccc
Confidence            3345568999999999999999999999999999999999999999876      4677888888888877654321111


Q ss_pred             Cc-cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccC
Q 013220          348 QS-KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  420 (447)
Q Consensus       348 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~  420 (447)
                      .. ...+....         ...       ...+....++.+.+||.+||++||++||||+|+|+||||++...
T Consensus       244 ~~~~~~~~~~~---------~~~-------~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~e~L~Hpff~~i~~  301 (305)
T d1blxa_         244 ALPRQAFHSKS---------AQP-------IEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYFQDLER  301 (305)
T ss_dssp             SSCGGGSCCCC---------CCC-------GGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTCCC
T ss_pred             cchhhhhcccc---------ccc-------hhhccccCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhcCchh
Confidence            11 10110000         000       01133455778999999999999999999999999999997653

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-52  Score=397.90  Aligned_cols=252  Identities=23%  Similarity=0.359  Sum_probs=198.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.+.||+|+||+||+|++..+++.||+|++...   ....+.+.+|+++++.+      +||||+++++++.+.  
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l------~HpnIv~~~~~~~~~--   75 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLREL------KHPNIVRYYDRIIDR--   75 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSC------CCTTBCCEEEEEEC---
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHC------CCCCEeeEEEEEEeC--
Confidence            5799999999999999999999999999999987643   23356788999999998      899999999998754  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhhCC-----cccccCCCCCeEeeecCCCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELG-----IIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~--~~~~l~~~~~~~i~~qil~aL~~lH~~~g-----IiH~Dikp~Nill~~~~~~~  184 (447)
                      +...+|+||||| +++|.+++...  ....+++..++.++.||+.||+|||++ |     |+||||||+|||+       
T Consensus        76 ~~~~~~ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~-~~~~~~IiHrDiKp~NIll-------  147 (269)
T d2java1          76 TNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRR-SDGGHTVLHRDLKPANVFL-------  147 (269)
T ss_dssp             ---CEEEEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHH-CC---------CCGGGEEE-------
T ss_pred             CCCEEEEEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHh-cCCCCCEEeCcCchhhcCc-------
Confidence            345799999999 88999988543  234699999999999999999999996 6     9999999999999       


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                       +.++.+||+|||+|.
T Consensus       148 -----------------------------------------------------------------~~~~~vkl~DFG~a~  162 (269)
T d2java1         148 -----------------------------------------------------------------DGKQNVKLGDFGLAR  162 (269)
T ss_dssp             -----------------------------------------------------------------CTTSCEEECCHHHHH
T ss_pred             -----------------------------------------------------------------CCCCcEEEeecccee
Confidence                                                                             446789999999997


Q ss_pred             ccccc---cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHH
Q 013220          265 RANKQ---FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  341 (447)
Q Consensus       265 ~~~~~---~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~  341 (447)
                      .....   ....+||+.|+|||++.+..|+.++|||||||++|+|++|+.||...+      .......+..  +..   
T Consensus       163 ~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~------~~~~~~~i~~--~~~---  231 (269)
T d2java1         163 ILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFS------QKELAGKIRE--GKF---  231 (269)
T ss_dssp             HC-----------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHH--TCC---
T ss_pred             ecccCCCccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCC------HHHHHHHHHc--CCC---
Confidence            65432   234689999999999999999999999999999999999999997542      2211111111  110   


Q ss_pred             hhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccc
Q 013220          342 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  415 (447)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f  415 (447)
                                                          ..++...++++.+||.+||+.||++|||++|+|+|||+
T Consensus       232 ------------------------------------~~~~~~~s~~l~~li~~~L~~dp~~Rps~~ell~hp~i  269 (269)
T d2java1         232 ------------------------------------RRIPYRYSDELNEIITRMLNLKDYHRPSVEEILENPLI  269 (269)
T ss_dssp             ------------------------------------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTC
T ss_pred             ------------------------------------CCCCcccCHHHHHHHHHHcCCChhHCcCHHHHHhCCcC
Confidence                                                12344567789999999999999999999999999996

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-51  Score=399.48  Aligned_cols=259  Identities=28%  Similarity=0.443  Sum_probs=211.4

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-------HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-------QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-------~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      ++|++.++||+|+||+||+|++..+++.||||+++...       ...+.+.+|+++|+.+      +|||||+++++|.
T Consensus        10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l------~HpnIv~~~~~~~   83 (293)
T d1jksa_          10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEI------QHPNVITLHEVYE   83 (293)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHC------CCTTBCCEEEEEE
T ss_pred             cCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhC------CCCCCCcEEEEEE
Confidence            68999999999999999999999999999999876432       1246788999999999      8999999999998


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCc
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                      +.    ..+|+||||| +++|.+++...  ..+++..++.++.|++.||+|||++ ||+||||||+||++....      
T Consensus        84 ~~----~~~~iv~E~~~gg~L~~~i~~~--~~l~~~~~~~~~~qi~~al~yLH~~-~ivHrDiKp~Nill~~~~------  150 (293)
T d1jksa_          84 NK----TDVILILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSL-QIAHFDLKPENIMLLDRN------  150 (293)
T ss_dssp             CS----SEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEESCSS------
T ss_pred             EC----CEEEEEEEcCCCccccchhccc--cccchhHHHHHHHHHHHHHHhhhhc-ceeecccccceEEEecCC------
Confidence            54    7899999999 88999988754  3599999999999999999999996 999999999999995421      


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                    .....+||+|||++....
T Consensus       151 --------------------------------------------------------------~~~~~vkl~DfG~a~~~~  168 (293)
T d1jksa_         151 --------------------------------------------------------------VPKPRIKIIDFGLAHKID  168 (293)
T ss_dssp             --------------------------------------------------------------SSSCCEEECCCTTCEECT
T ss_pred             --------------------------------------------------------------CcccceEecchhhhhhcC
Confidence                                                                          123469999999997654


Q ss_pred             c--ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          268 K--QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       268 ~--~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                      .  ......||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+      ....+..+.+.....+..    
T Consensus       169 ~~~~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~------~~~~~~~i~~~~~~~~~~----  238 (293)
T d1jksa_         169 FGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDT------KQETLANVSAVNYEFEDE----  238 (293)
T ss_dssp             TSCBCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHTTCCCCCHH----
T ss_pred             CCccccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCC------HHHHHHHHHhcCCCCCch----
Confidence            3  3445688999999999999889999999999999999999999997652      222333322211111111    


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                        .+..++..+.+||.+||+.||++|||++|+|+||||+...
T Consensus       239 ----------------------------------~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~hp~~~~~~  278 (293)
T d1jksa_         239 ----------------------------------YFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWIKPKD  278 (293)
T ss_dssp             ----------------------------------HHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSTTTCC--
T ss_pred             ----------------------------------hcCCCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCCCC
Confidence                                              1123466889999999999999999999999999998654

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-51  Score=407.70  Aligned_cols=303  Identities=29%  Similarity=0.474  Sum_probs=227.1

Q ss_pred             CccccccCc-ccc-CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCc
Q 013220           23 GYHAVRVGD-LFN-GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNE   97 (447)
Q Consensus        23 ~~~~~~~g~-~~~-~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~   97 (447)
                      -||||.+|+ +++ -++|++.++||+|+||+||+|++..+++.||||++...   ......+.+|+++++.+      +|
T Consensus         2 ~~~~~~~~~~~f~i~~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l------~h   75 (355)
T d2b1pa1           2 QFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCV------NH   75 (355)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHC------CC
T ss_pred             CCEEEEeCCcceeecCCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhc------CC
Confidence            489999999 442 26899999999999999999999999999999998643   33445788999999999      88


Q ss_pred             ceeeeecccccccCC--CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCe
Q 013220           98 KCVIRLIDHFKHAGP--NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENI  175 (447)
Q Consensus        98 ~~Iv~~~~~~~~~~~--~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Ni  175 (447)
                      +||++++++|.....  +..++|+|||||.+++.+.+.    ..+++..++.++.||+.||+|||+. ||+||||||+||
T Consensus        76 pnIv~~~~~f~~~~~~~~~~~~~iv~Ey~~~~l~~~~~----~~~~~~~i~~~~~qil~gl~~LH~~-giiHrDlKP~Ni  150 (355)
T d2b1pa1          76 KNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQ----MELDHERMSYLLYQMLCGIKHLHSA-GIIHRDLKPSNI  150 (355)
T ss_dssp             TTBCCCSEEECSCCSTTTCCEEEEEEECCSEEHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGE
T ss_pred             CCeeEEEEEEecccccccCceeEEEEeccchHHHHhhh----cCCCHHHHHHHHHHHHHHHHHhhhc-ccccccCCcccc
Confidence            999999999976543  447999999999777766653    3589999999999999999999996 999999999999


Q ss_pred             EeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccce
Q 013220          176 LLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRC  255 (447)
Q Consensus       176 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (447)
                      |+                                                                        +.+..+
T Consensus       151 l~------------------------------------------------------------------------~~~~~~  158 (355)
T d2b1pa1         151 VV------------------------------------------------------------------------KSDCTL  158 (355)
T ss_dssp             EE------------------------------------------------------------------------CTTCCE
T ss_pred             cc------------------------------------------------------------------------ccccce
Confidence            99                                                                        446679


Q ss_pred             eEeecCcccccc--cccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHH
Q 013220          256 KVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMME  333 (447)
Q Consensus       256 kL~Dfg~a~~~~--~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~  333 (447)
                      +++|||.+....  ......++|+.|+|||++.+..++.++||||+||++|+|++|+.||.+.      +....+..+.+
T Consensus       159 kl~df~~~~~~~~~~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~------~~~~~~~~i~~  232 (355)
T d2b1pa1         159 KILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGR------DYIDQWNKVIE  232 (355)
T ss_dssp             EECCCCC---------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHH
T ss_pred             eeechhhhhccccccccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCC------CHHHHHHHHHH
Confidence            999999886544  3334557899999999999999999999999999999999999999876      47777788888


Q ss_pred             HhCCCCHHhhhCCCCc-cchhcccchhhhhhhcccCchhHHhhhh-----cCCChhhHHHHHHHHhhccccCCCCCCChH
Q 013220          334 LIGKMPRKIAIGGAQS-KDYFDRHGDLKRIRRLKFWSLDRLLVDK-----YRFSETDAREFAEFLVPLLDFTPEKRPTAQ  407 (447)
Q Consensus       334 ~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~ll~~~L~~dP~kRpta~  407 (447)
                      ..+..+.++....... ..+........      ...........     .......+..+.+||++||++||++||||+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~  306 (355)
T d2b1pa1         233 QLGTPCPEFMKKLQPTVRNYVENRPKYA------GLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVD  306 (355)
T ss_dssp             HHCCCCHHHHTTSCHHHHHHHHTSCCCC------CCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHH
T ss_pred             hccCCCHHHHHHhhhhHHHHhhcCcccc------ccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHH
Confidence            7877776654332211 11111111000      00111111000     011234577899999999999999999999


Q ss_pred             HHhcCcccccccC
Q 013220          408 QCLQHPWLSLRNS  420 (447)
Q Consensus       408 elL~hp~f~~~~~  420 (447)
                      |+|+||||+....
T Consensus       307 elL~Hpw~~~~~~  319 (355)
T d2b1pa1         307 DALQHPYINVWYD  319 (355)
T ss_dssp             HHHTSTTTGGGCC
T ss_pred             HHhcCcccCCCCC
Confidence            9999999997543

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-51  Score=406.08  Aligned_cols=250  Identities=26%  Similarity=0.420  Sum_probs=213.9

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|++.+.||+|+||.||+|++..+++.||||+++...    ...+.+.+|+++|+.+      +||||++++++|.+. 
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l------~hp~Iv~l~~~~~~~-   77 (337)
T d1o6la_           5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNT------RHPFLTALKYAFQTH-   77 (337)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSC------CCTTBCCEEEEEECS-
T ss_pred             HhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhC------CCCCEEEEEeeeccc-
Confidence            57999999999999999999999999999999987543    2345688999999998      899999999999854 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                         +.+|+||||| |++|.+.+...  ..+++..++.+++||+.||+|||++ ||+||||||+|||+             
T Consensus        78 ---~~~~iv~ey~~gg~L~~~~~~~--~~~~e~~~~~~~~qil~al~ylH~~-~iiHRDlKP~NILl-------------  138 (337)
T d1o6la_          78 ---DRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSALEYLHSR-DVVYRDIKLENLML-------------  138 (337)
T ss_dssp             ---SEEEEEEECCTTCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCGGGEEE-------------
T ss_pred             ---cccccceeccCCCchhhhhhcc--cCCcHHHHHHHHHHHhhhhhhhhhc-CccccccCHHHeEe-------------
Confidence               7899999999 89999988765  3599999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc--
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--  268 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~--  268 (447)
                                                                                 +.++.+||+|||+|+....  
T Consensus       139 -----------------------------------------------------------~~~g~vkl~DFG~a~~~~~~~  159 (337)
T d1o6la_         139 -----------------------------------------------------------DKDGHIKITDFGLCKEGISDG  159 (337)
T ss_dssp             -----------------------------------------------------------CTTSCEEECCCTTCBCSCCTT
T ss_pred             -----------------------------------------------------------cCCCCEEEeecccccccccCC
Confidence                                                                       4467899999999975432  


Q ss_pred             -ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          269 -QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       269 -~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                       .....+||+.|+|||++.+..|+.++|||||||++|+|++|+.||.+.+      .....                   
T Consensus       160 ~~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~------~~~~~-------------------  214 (337)
T d1o6la_         160 ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD------HERLF-------------------  214 (337)
T ss_dssp             CCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSS------HHHHH-------------------
T ss_pred             cccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcC------HHHHH-------------------
Confidence             3345689999999999999999999999999999999999999998653      11111                   


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC-----ChHHHhcCcccccc
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLR  418 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp-----ta~elL~hp~f~~~  418 (447)
                                             ..+....+.+|+.++.++.+||.+||++||++|+     +++|+++||||+..
T Consensus       215 -----------------------~~i~~~~~~~p~~~s~~~~dli~~~L~~dP~~R~~~~~~~~~eil~Hp~f~~i  267 (337)
T d1o6la_         215 -----------------------ELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSI  267 (337)
T ss_dssp             -----------------------HHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTTC
T ss_pred             -----------------------HHHhcCCCCCCccCCHHHHHHHHhhccCCchhhcccccccHHHHHcCcccccC
Confidence                                   1222233446667788999999999999999999     49999999999864

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-51  Score=403.43  Aligned_cols=257  Identities=25%  Similarity=0.400  Sum_probs=213.9

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      ++|++.+.||+|+||+||+|++..+++.||||+++........+.+|+++|+.+      +|+||++++++|.+.    .
T Consensus         5 ~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~~~~~~~Ei~il~~l------~HpnIv~~~~~~~~~----~   74 (321)
T d1tkia_           5 EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIA------RHRNILHLHESFESM----E   74 (321)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHS------CCTTBCCEEEEEEET----T
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcccHHHHHHHHHHHHhC------CCCCCCeEEEEEEEC----C
Confidence            689999999999999999999999999999999987766667788999999999      899999999999864    6


Q ss_pred             eEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          116 HLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       116 ~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      .+|+||||| |++|.+.+.... ..+++.+++.++.||+.||+|||++ ||+||||||+|||+..               
T Consensus        75 ~~~lvmE~~~gg~L~~~i~~~~-~~l~e~~~~~i~~qi~~al~yLH~~-~iiHrDlKp~NIll~~---------------  137 (321)
T d1tkia_          75 ELVMIFEFISGLDIFERINTSA-FELNEREIVSYVHQVCEALQFLHSH-NIGHFDIRPENIIYQT---------------  137 (321)
T ss_dssp             EEEEEECCCCCCBHHHHHTSSS-CCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEESS---------------
T ss_pred             EEEEEEecCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHc-CCCcccccccceeecC---------------
Confidence            899999999 889999886432 3589999999999999999999996 9999999999999943               


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--ccc
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FAE  272 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--~~~  272 (447)
                                                                             +....++|+|||++......  ...
T Consensus       138 -------------------------------------------------------~~~~~ikl~DFG~~~~~~~~~~~~~  162 (321)
T d1tkia_         138 -------------------------------------------------------RRSSTIKIIEFGQARQLKPGDNFRL  162 (321)
T ss_dssp             -------------------------------------------------------SSCCCEEECCCTTCEECCTTCEEEE
T ss_pred             -------------------------------------------------------CCceEEEEcccchhhccccCCcccc
Confidence                                                                   23457999999999765432  334


Q ss_pred             CCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccch
Q 013220          273 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  352 (447)
Q Consensus       273 ~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  352 (447)
                      .++|+.|+|||.+.+..|+.++|||||||++|+|++|..||...+      ....+..+....-.++...          
T Consensus       163 ~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~------~~~~~~~i~~~~~~~~~~~----------  226 (321)
T d1tkia_         163 LFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAET------NQQIIENIMNAEYTFDEEA----------  226 (321)
T ss_dssp             EESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSS------HHHHHHHHHHTCCCCCHHH----------
T ss_pred             cccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCC------HHHHHHHHHhCCCCCChhh----------
Confidence            578999999999999899999999999999999999999997652      3333333332211111110          


Q ss_pred             hcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          353 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                                                  ...+++++.+||.+||+.||++|||++|+|+||||+..
T Consensus       227 ----------------------------~~~~s~~~~~li~~~L~~dp~~R~s~~eil~hp~~~~~  264 (321)
T d1tkia_         227 ----------------------------FKEISIEAMDFVDRLLVKERKSRMTASEALQHPWLKQK  264 (321)
T ss_dssp             ----------------------------HTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHSC
T ss_pred             ----------------------------ccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhccC
Confidence                                        11346689999999999999999999999999999754

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-51  Score=408.02  Aligned_cols=251  Identities=27%  Similarity=0.410  Sum_probs=215.3

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|+++++||+|+||+||+|++..+++.||||++....    ...+.+.+|+++|+.+      +||||++++++|... 
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l------~hpnIv~~~~~~~~~-  113 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAV------NFPFLVKLEFSFKDN-  113 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTC------CCTTBCCEEEEEECS-
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHc------CCCcEeecccccccc-
Confidence            68999999999999999999999999999999886543    2345688999999998      899999999999854 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                         ..+++||||+ +++|...+...  ..+++..++.++.||+.||.|||++ |||||||||+|||+             
T Consensus       114 ---~~~~~v~e~~~~g~l~~~l~~~--~~l~e~~~~~i~~qi~~aL~yLH~~-~iiHRDIKP~NILl-------------  174 (350)
T d1rdqe_         114 ---SNLYMVMEYVAGGEMFSHLRRI--GRFSEPHARFYAAQIVLTFEYLHSL-DLIYRDLKPENLLI-------------  174 (350)
T ss_dssp             ---SEEEEEEECCTTCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEE-------------
T ss_pred             ---cccccccccccccchhhhHhhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CEecCcCCHHHccc-------------
Confidence               6899999999 88998888654  3599999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF  270 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~  270 (447)
                                                                                 +..+.+||+|||+|.......
T Consensus       175 -----------------------------------------------------------~~~g~ikL~DFG~a~~~~~~~  195 (350)
T d1rdqe_         175 -----------------------------------------------------------DQQGYIQVTDFGFAKRVKGRT  195 (350)
T ss_dssp             -----------------------------------------------------------CTTSCEEECCCTTCEECSSCB
T ss_pred             -----------------------------------------------------------CCCCCEEeeeceeeeeccccc
Confidence                                                                       446789999999998877776


Q ss_pred             ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          271 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      ...+||+.|+|||++.+..|+.++|||||||++|+|++|..||.+.+      ......                     
T Consensus       196 ~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~------~~~~~~---------------------  248 (350)
T d1rdqe_         196 WTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ------PIQIYE---------------------  248 (350)
T ss_dssp             CCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHH---------------------
T ss_pred             ccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcC------HHHHHH---------------------
Confidence            77889999999999999999999999999999999999999997542      111111                     


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC-----ChHHHhcCccccccc
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRN  419 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp-----ta~elL~hp~f~~~~  419 (447)
                                           .+....+.++..+++++.+||.+||+.||.+|+     |++|+++||||+..+
T Consensus       249 ---------------------~i~~~~~~~p~~~s~~~~~li~~~L~~dP~kR~~~~r~t~~ell~Hp~f~~~~  301 (350)
T d1rdqe_         249 ---------------------KIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTD  301 (350)
T ss_dssp             ---------------------HHHHCCCCCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTSGGGTTCC
T ss_pred             ---------------------HHhcCCCCCCccCCHHHHHHHHHHhhhCHHhccccccccHHHHHcCccccCCC
Confidence                                 122223335556678999999999999999995     999999999998753

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.7e-51  Score=395.40  Aligned_cols=284  Identities=27%  Similarity=0.460  Sum_probs=221.4

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.++||+|+||+||+|++..+++.||||+++...   ...+.+.+|+++++.+      +|+||++++++|...  
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l------~Hp~Iv~~~~~~~~~--   73 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKEL------NHPNIVKLLDVIHTE--   73 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTC------CCTTBCCEEEEEEET--
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhC------CCCcEEEeccccccc--
Confidence            58999999999999999999999999999999886543   2356788999999998      899999999999864  


Q ss_pred             CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          113 NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       113 ~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                        ..+|+|||||++.+..++.......+++..++.++.||+.||+|||++ |||||||||+|||+               
T Consensus        74 --~~~~iv~e~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~-~IiHrDiKpeNIl~---------------  135 (298)
T d1gz8a_          74 --NKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH-RVLHRDLKPQNLLI---------------  135 (298)
T ss_dssp             --TEEEEEEECCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEE---------------
T ss_pred             --cceeEEEeecCCchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcC-CEEccccCchheee---------------
Confidence              789999999977777766555556799999999999999999999996 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---  269 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---  269 (447)
                                                                               +.+..+||+|||.|......   
T Consensus       136 ---------------------------------------------------------~~~~~~kl~DFG~a~~~~~~~~~  158 (298)
T d1gz8a_         136 ---------------------------------------------------------NTEGAIKLADFGLARAFGVPVRT  158 (298)
T ss_dssp             ---------------------------------------------------------CTTSCEEECSTTHHHHHCCCSBC
T ss_pred             ---------------------------------------------------------cccCcceeccCCcceeccCCccc
Confidence                                                                     44567999999999755432   


Q ss_pred             cccCCCCCCccChHHhhcCCC-CccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          270 FAEEIQTRQYRAPEVILRAGY-SFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~~-~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      ....+||+.|+|||.+....+ +.++|||||||++|+|++|+.||.+.      +....+..+....+...+........
T Consensus       159 ~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~  232 (298)
T d1gz8a_         159 YTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGD------SEIDQLFRIFRTLGTPDEVVWPGVTS  232 (298)
T ss_dssp             TTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCCCCTTTSTTGGG
T ss_pred             ceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCC------CHHHHHHHHHHhcCCCchhhcccccc
Confidence            334579999999999887664 78999999999999999999999765      46677777777777766543211110


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCC
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  421 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~  421 (447)
                      ...+.      .............       .....++++.+||.+||+.||++|||++|+|+||||++....
T Consensus       233 ~~~~~------~~~~~~~~~~~~~-------~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~H~ff~~~~~p  292 (298)
T d1gz8a_         233 MPDYK------PSFPKWARQDFSK-------VVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKP  292 (298)
T ss_dssp             STTCC------TTSCCCCCCCHHH-------HSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTTCCCC
T ss_pred             ccccc------cccccccccchhh-------hccCCCHHHHHHHHHHccCChhHCcCHHHHhCCHhhccCCCC
Confidence            00000      0000000000000       112345688999999999999999999999999999976543

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=7.6e-51  Score=397.68  Aligned_cols=252  Identities=27%  Similarity=0.370  Sum_probs=205.0

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh----HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA----AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~----~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      .+|++.++||+|+||+||+|++..+++.||||++...    ....+.+.+|+++++.+      +|||||++++++... 
T Consensus        15 ~~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l------~HpnIv~~~~~~~~~-   87 (309)
T d1u5ra_          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKL------RHPNTIQYRGCYLRE-   87 (309)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTC------CCTTBCCEEEEEEET-
T ss_pred             HhcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHC------CCCCEeeEEEEEEEC-
Confidence            3699999999999999999999999999999987543    23345788999999999      899999999998854 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                         ..+|+||||| ++++.......  ..+++..++.++.||+.||+|||++ ||+||||||+|||+             
T Consensus        88 ---~~~~iv~E~~~~g~l~~~~~~~--~~l~e~~~~~i~~qi~~aL~yLH~~-~iiHrDiKp~NILl-------------  148 (309)
T d1u5ra_          88 ---HTAWLVMEYCLGSASDLLEVHK--KPLQEVEIAAVTHGALQGLAYLHSH-NMIHRDVKAGNILL-------------  148 (309)
T ss_dssp             ---TEEEEEEECCSEEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCSGGGEEE-------------
T ss_pred             ---CEEEEEEEecCCCchHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHhC-CEeccCCCcceEEE-------------
Confidence               6899999999 66665444432  4699999999999999999999997 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF  270 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~  270 (447)
                                                                                 +.++.+||+|||+|...... 
T Consensus       149 -----------------------------------------------------------~~~~~~Kl~DFG~a~~~~~~-  168 (309)
T d1u5ra_         149 -----------------------------------------------------------SEPGLVKLGDFGSASIMAPA-  168 (309)
T ss_dssp             -----------------------------------------------------------ETTTEEEECCCTTCBSSSSB-
T ss_pred             -----------------------------------------------------------CCCCCEEEeecccccccCCC-
Confidence                                                                       34678999999999765443 


Q ss_pred             ccCCCCCCccChHHhhc---CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          271 AEEIQTRQYRAPEVILR---AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~---~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                      ...+||+.|+|||++.+   ..|+.++|||||||++|+|++|..||.+..      ....+..+.+  +..+.       
T Consensus       169 ~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~------~~~~~~~i~~--~~~~~-------  233 (309)
T d1u5ra_         169 NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN------AMSALYHIAQ--NESPA-------  233 (309)
T ss_dssp             CCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC------HHHHHHHHHH--SCCCC-------
T ss_pred             CccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCC------HHHHHHHHHh--CCCCC-------
Confidence            45689999999999964   458999999999999999999999997542      2222222111  11110       


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                     ..+...++++.+||.+||+.||++|||++|+|+||||+...
T Consensus       234 -------------------------------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~Hp~~~~~~  274 (309)
T d1u5ra_         234 -------------------------------LQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLRER  274 (309)
T ss_dssp             -------------------------------CSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTCHHHHSCC
T ss_pred             -------------------------------CCCCCCCHHHHHHHHHHCcCChhHCcCHHHHHhCHHhcCCC
Confidence                                           01223467899999999999999999999999999998543

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-51  Score=403.66  Aligned_cols=265  Identities=27%  Similarity=0.409  Sum_probs=211.0

Q ss_pred             CccccCCceEEEEe-ecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           30 GDLFNGGRYIAQRK-LGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        30 g~~~~~~~y~l~~~-lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      +.++  ++|.+.++ ||+|+||+||+|++..+++.||||+++..    ..+.+|++++.++.     +||||++++++|.
T Consensus         7 ~~i~--~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~----~~~~~E~~~~~~~~-----~hpnIv~l~~~~~   75 (335)
T d2ozaa1           7 NAII--DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC----PKARREVELHWRAS-----QCPHIVRIVDVYE   75 (335)
T ss_dssp             SCGG--GTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECS----HHHHHHHHHHHHHT-----TSTTBCCEEEEEE
T ss_pred             CCcc--cCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECCc----HHHHHHHHHHHHhc-----CCCCCCeEEEEEe
Confidence            3444  57988765 99999999999999999999999998754    34678998876653     7999999999998


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCc
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                      +......++|+||||| |++|.+++.......+++..++.++.||+.||+|||++ ||+||||||+|||+...       
T Consensus        76 ~~~~~~~~~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~-~iiHRDiKp~NIll~~~-------  147 (335)
T d2ozaa1          76 NLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI-NIAHRDVKPENLLYTSK-------  147 (335)
T ss_dssp             EEETTEEEEEEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEESCS-------
T ss_pred             ecccCCCEEEEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHc-CCccccccccccccccc-------
Confidence            7554567899999999 88999998754445699999999999999999999996 99999999999999542       


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                    .....+||+|||+|....
T Consensus       148 --------------------------------------------------------------~~~~~~Kl~DFG~a~~~~  165 (335)
T d2ozaa1         148 --------------------------------------------------------------RPNAILKLTDFGFAKETT  165 (335)
T ss_dssp             --------------------------------------------------------------STTCCEEECCCTTCEECC
T ss_pred             --------------------------------------------------------------cccccccccccceeeecc
Confidence                                                                          234579999999997543


Q ss_pred             --cccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhC
Q 013220          268 --KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  345 (447)
Q Consensus       268 --~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (447)
                        ......+||+.|+|||++.+..|+.++|||||||++|+|++|+.||.+.+....      ...+...+          
T Consensus       166 ~~~~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~------~~~~~~~i----------  229 (335)
T d2ozaa1         166 SHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI------SPGMKTRI----------  229 (335)
T ss_dssp             CCCCCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC--------------CC----------
T ss_pred             CCCccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHH------HHHHHHHH----------
Confidence              334456899999999999998999999999999999999999999976642211      11111000          


Q ss_pred             CCCccchhcccchhhhhhhcccCchhHHhhhhcCCC----hhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          346 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFS----ETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                  ......++    ..+++++.+||.+||+.||++|||+.|+|+||||....
T Consensus       230 ----------------------------~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~hp~~~~~~  279 (335)
T d2ozaa1         230 ----------------------------RMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQST  279 (335)
T ss_dssp             ----------------------------CSCSSSCCTTHHHHSCHHHHHHHHHHSCSSTTTSCCHHHHHHSHHHHTTT
T ss_pred             ----------------------------hcCCCCCCCcccccCCHHHHHHHHHHccCChhHCcCHHHHHcCHHhhCCC
Confidence                                        00000111    23567899999999999999999999999999997543

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-50  Score=392.35  Aligned_cols=276  Identities=30%  Similarity=0.457  Sum_probs=213.4

Q ss_pred             EEEeecccCceEEEEEEeCCCCeEEEEEEechhHH------hHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           40 AQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ------FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        40 l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~------~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      .++.||+|+||+||+|++..+++.||||+++....      ..+.+.+|+++++.+      +|+|||+++++|...   
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l------~hpnIv~~~~~~~~~---   72 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQEL------SHPNIIGLLDAFGHK---   72 (299)
T ss_dssp             EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHC------CCTTBCCEEEEECCT---
T ss_pred             cceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhC------CCCCEeEEEeeeccC---
Confidence            46789999999999999999999999998765432      234688999999999      899999999999864   


Q ss_pred             cceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          114 GQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       114 ~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                       .++|+|||||.+.+...+.. ....+++..++.+++||+.||+|||++ ||+||||||+|||+                
T Consensus        73 -~~~~ivmE~~~~~~~~~~~~-~~~~l~~~~~~~~~~qil~aL~~lH~~-~iiHrDiKp~NIli----------------  133 (299)
T d1ua2a_          73 -SNISLVFDFMETDLEVIIKD-NSLVLTPSHIKAYMLMTLQGLEYLHQH-WILHRDLKPNNLLL----------------  133 (299)
T ss_dssp             -TCCEEEEECCSEEHHHHHTT-CCSSCCSSHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEE----------------
T ss_pred             -CceeehhhhhcchHHhhhhh-cccCCCHHHHHHHHHHHHHHHHHhhcc-ceecccCCcceEEe----------------
Confidence             67999999995554444433 234589999999999999999999996 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---c
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---F  270 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---~  270 (447)
                                                                              +..+.+||+|||.+......   .
T Consensus       134 --------------------------------------------------------~~~~~~KL~DFG~a~~~~~~~~~~  157 (299)
T d1ua2a_         134 --------------------------------------------------------DENGVLKLADFGLAKSFGSPNRAY  157 (299)
T ss_dssp             --------------------------------------------------------CTTCCEEECCCGGGSTTTSCCCCC
T ss_pred             --------------------------------------------------------cCCCccccccCccccccCCCcccc
Confidence                                                                    44678999999999765432   3


Q ss_pred             ccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 AEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      ...+||+.|+|||++.+. .|+.++|||||||++|+|++|..||.+.      ++.+.+..+.+.+|..+..........
T Consensus       158 ~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~------~~~~~l~~i~~~~~~~~~~~~~~~~~~  231 (299)
T d1ua2a_         158 THQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGD------SDLDQLTRIFETLGTPTEEQWPDMCSL  231 (299)
T ss_dssp             CCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHHHCCCCTTTSSSTTSS
T ss_pred             cceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCC------CHHHHHHHHHHhcCCCChhhccchhcc
Confidence            345799999999999754 5799999999999999999999999876      477788889998888775532222111


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                      ..... .      .......+..+       ....++++.+||.+||+.||++||||+|+|+||||++..
T Consensus       232 ~~~~~-~------~~~~~~~~~~~-------~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~Hp~f~~~p  287 (299)
T d1ua2a_         232 PDYVT-F------KSFPGIPLHHI-------FSAAGDDLLDLIQGLFLFNPCARITATQALKMKYFSNRP  287 (299)
T ss_dssp             TTCCC-C------CCCCCCCHHHH-------CTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSGGGTSSS
T ss_pred             chhhh-h------ccCCCCChHHh-------cccCCHHHHHHHHHHccCChhhCcCHHHHhCCHhhCCCC
Confidence            11100 0      00000011111       123467899999999999999999999999999999754

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=7.8e-50  Score=384.67  Aligned_cols=254  Identities=28%  Similarity=0.440  Sum_probs=209.0

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----------HhHHHHHHHHHHHHHhhcCCCCCcceeeeecc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----------QFAQAALHEIEVLSAVADGDPSNEKCVIRLID  105 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----------~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~  105 (447)
                      ++|++.+.||+|+||+||+|++..+++.||||++....          ...+.+.+|+++++.+.     .|+||+++++
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-----~hpnIv~~~~   77 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVS-----GHPNIIQLKD   77 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHT-----TCTTBCCEEE
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhc-----CCCCeEEEEe
Confidence            68999999999999999999999999999999875431          22346888999999995     5999999999


Q ss_pred             cccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCC
Q 013220          106 HFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       106 ~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~  184 (447)
                      +|.+.    ..+|+||||| +++|.+++...  ..+++..++.++.||+.||+|||++ ||+||||||+|||+       
T Consensus        78 ~~~~~----~~~~ivmE~~~~g~L~~~l~~~--~~l~e~~~~~~~~qi~~al~~lH~~-~ivHrDlkp~Nill-------  143 (277)
T d1phka_          78 TYETN----TFFFLVFDLMKKGELFDYLTEK--VTLSEKETRKIMRALLEVICALHKL-NIVHRDLKPENILL-------  143 (277)
T ss_dssp             EEECS----SEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEE-------
T ss_pred             ecccC----cceEEEEEcCCCchHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHc-CCcccccccceEEE-------
Confidence            99854    7899999999 88999998754  4599999999999999999999996 99999999999999       


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                       +.++.+||+|||++.
T Consensus       144 -----------------------------------------------------------------~~~~~~kl~DFG~a~  158 (277)
T d1phka_         144 -----------------------------------------------------------------DDDMNIKLTDFGFSC  158 (277)
T ss_dssp             -----------------------------------------------------------------CTTCCEEECCCTTCE
T ss_pred             -----------------------------------------------------------------cCCCCeEEccchhee
Confidence                                                                             446789999999997


Q ss_pred             cccc--ccccCCCCCCccChHHhhc------CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhC
Q 013220          265 RANK--QFAEEIQTRQYRAPEVILR------AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIG  336 (447)
Q Consensus       265 ~~~~--~~~~~~gt~~y~aPE~l~~------~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g  336 (447)
                      ..+.  .....+||+.|+|||.+.+      ..++.++||||+||++|+|++|+.||.+.+      .......+....-
T Consensus       159 ~~~~~~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~------~~~~~~~i~~~~~  232 (277)
T d1phka_         159 QLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRK------QMLMLRMIMSGNY  232 (277)
T ss_dssp             ECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHTCC
T ss_pred             EccCCCceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCC------HHHHHHHHHhCCC
Confidence            6543  3455689999999999963      246889999999999999999999997652      2222222222100


Q ss_pred             CCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccc
Q 013220          337 KMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  416 (447)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~  416 (447)
                      ..+                                      .......++++.+||.+||+.||++|||++|+|+||||+
T Consensus       233 ~~~--------------------------------------~~~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~h~~~~  274 (277)
T d1phka_         233 QFG--------------------------------------SPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPFFQ  274 (277)
T ss_dssp             CCC--------------------------------------TTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGC
T ss_pred             CCC--------------------------------------CcccccCCHHHHHHHHHHccCChhHCcCHHHHHcCHHHH
Confidence            000                                      001234577899999999999999999999999999998


Q ss_pred             c
Q 013220          417 L  417 (447)
Q Consensus       417 ~  417 (447)
                      .
T Consensus       275 ~  275 (277)
T d1phka_         275 Q  275 (277)
T ss_dssp             T
T ss_pred             H
Confidence            5

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-50  Score=396.15  Aligned_cols=250  Identities=30%  Similarity=0.457  Sum_probs=209.4

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHH-HhhcCCCCCcceeeeeccccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLS-AVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~-~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      ++|++.+.||+|+||+||+|++..+++.||||+++.+.    ...+.+..|..++. .+      +||||+++++++.+.
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~------~hp~Iv~~~~~~~~~   75 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAW------EHPFLTHMFCTFQTK   75 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHT------TCTTBCCEEEEEECS
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhC------CCCcEEEEEEEEccC
Confidence            57999999999999999999999999999999987543    22345667777665 45      899999999999854


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                          ..+|+||||| +++|.+++...  ..+++..++.++.||+.||+|||++ ||+||||||+|||+            
T Consensus        76 ----~~~yivmEy~~~g~L~~~i~~~--~~~~e~~~~~~~~qi~~al~ylH~~-~iiHrDikp~NiL~------------  136 (320)
T d1xjda_          76 ----ENLFFVMEYLNGGDLMYHIQSC--HKFDLSRATFYAAEIILGLQFLHSK-GIVYRDLKLDNILL------------  136 (320)
T ss_dssp             ----SEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCGGGEEE------------
T ss_pred             ----CceeEEEeecCCCcHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeeeccCcccceee------------
Confidence                6899999999 88999988754  3489999999999999999999997 99999999999999            


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc--
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--  267 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~--  267 (447)
                                                                                  +..+.+||+|||++....  
T Consensus       137 ------------------------------------------------------------~~~~~~kl~DFG~a~~~~~~  156 (320)
T d1xjda_         137 ------------------------------------------------------------DKDGHIKIADFGMCKENMLG  156 (320)
T ss_dssp             ------------------------------------------------------------CTTSCEEECCCTTCBCCCCT
T ss_pred             ------------------------------------------------------------cCCCceeccccchhhhcccc
Confidence                                                                        446789999999997543  


Q ss_pred             -cccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCC
Q 013220          268 -KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  346 (447)
Q Consensus       268 -~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  346 (447)
                       ......+||+.|+|||++.+..|+.++|||||||++|+|++|+.||.+.+      ......                 
T Consensus       157 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~------~~~~~~-----------------  213 (320)
T d1xjda_         157 DAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQD------EEELFH-----------------  213 (320)
T ss_dssp             TCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHH-----------------
T ss_pred             cccccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCC------HHHHHH-----------------
Confidence             22334579999999999999999999999999999999999999997652      111111                 


Q ss_pred             CCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChH-HHhcCcccccc
Q 013220          347 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQ-QCLQHPWLSLR  418 (447)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~-elL~hp~f~~~  418 (447)
                                               .+....+.+++.+++++.+||.+||+.||++|||+. |+++||||+..
T Consensus       214 -------------------------~i~~~~~~~p~~~s~~~~dli~~~L~~dP~~R~s~~~~l~~hpff~~~  261 (320)
T d1xjda_         214 -------------------------SIRMDNPFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQHPLFREI  261 (320)
T ss_dssp             -------------------------HHHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGGGSGGGTTC
T ss_pred             -------------------------HHHcCCCCCCccCCHHHHHHHHHhcccCCCCCcCHHHHHHhCchhccC
Confidence                                     122233345666788999999999999999999995 89999999875

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-49  Score=398.06  Aligned_cols=257  Identities=25%  Similarity=0.367  Sum_probs=208.7

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH----HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA----QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|++.+.||+|+||+||+|++..+++.||||++....    .....+.+|...++.+.+.   +|||||+++++|... 
T Consensus         4 ddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~---~hpnIv~l~~~~~~~-   79 (364)
T d1omwa3           4 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG---DCPFIVCMSYAFHTP-   79 (364)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSS---CCTTBCCEEEEEECS-
T ss_pred             HhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcC---CCCcEEEEEEEEEEC-
Confidence            67999999999999999999999999999999986543    2233455666666666433   799999999999854 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                         ..+|+||||| |++|.+++...  ..+++..++.++.||+.||+|||++ ||+||||||+|||+             
T Consensus        80 ---~~~~ivmE~~~gg~L~~~l~~~--~~~~e~~~~~~~~qi~~aL~ylH~~-~iiHrDlKP~NILl-------------  140 (364)
T d1omwa3          80 ---DKLSFILDLMNGGDLHYHLSQH--GVFSEADMRFYAAEIILGLEHMHNR-FVVYRDLKPANILL-------------  140 (364)
T ss_dssp             ---SEEEEEECCCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEE-------------
T ss_pred             ---CEEEEEEEecCCCcHHHHHHhc--ccccHHHHHHHHHHHHHHHHHHHHC-CccceeeccceeEE-------------
Confidence               6899999999 89999988755  3489999999999999999999996 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-  269 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-  269 (447)
                                                                                 +..+.+||+|||+|...... 
T Consensus       141 -----------------------------------------------------------~~~g~iKl~DFGla~~~~~~~  161 (364)
T d1omwa3         141 -----------------------------------------------------------DEHGHVRISDLGLACDFSKKK  161 (364)
T ss_dssp             -----------------------------------------------------------CSSSCEEECCCTTCEECSSSC
T ss_pred             -----------------------------------------------------------cCCCcEEEeeeceeeecCCCc
Confidence                                                                       44678999999999865543 


Q ss_pred             cccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          270 FAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      ....+||+.|+|||++.+ ..|+.++|||||||++|+|++|+.||...+...       ...+.+..             
T Consensus       162 ~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~-------~~~~~~~~-------------  221 (364)
T d1omwa3         162 PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKD-------KHEIDRMT-------------  221 (364)
T ss_dssp             CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSC-------HHHHHHHS-------------
T ss_pred             ccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHH-------HHHHHHhc-------------
Confidence            345689999999999975 568999999999999999999999997653211       11111111             


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCC-----hHHHhcCccccccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLRN  419 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpt-----a~elL~hp~f~~~~  419 (447)
                                               ......++..+++++.+||.+||+.||++|||     |+|+++||||+..+
T Consensus       222 -------------------------~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~~~a~eil~Hp~f~~i~  272 (364)
T d1omwa3         222 -------------------------LTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLD  272 (364)
T ss_dssp             -------------------------SSCCCCCCSSSCHHHHHHHHHHTCSSTTTSTTTSSSTHHHHHTSGGGTTCC
T ss_pred             -------------------------ccCCCCCCCCCCHHHHHHHHHHcccCHHHhCCCcccCHHHHHcCccccCCC
Confidence                                     11122345566789999999999999999999     79999999998754

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-50  Score=388.73  Aligned_cols=248  Identities=25%  Similarity=0.381  Sum_probs=205.7

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHH-------hHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQ-------FAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~-------~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      ++|++.+.||+|+||+||+|++..+++.||||++.....       ....+.+|+++++.+.+    .|+||++++++|.
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~----~h~nIv~~~~~~~   79 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS----GFSGVIRLLDWFE   79 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCS----SSCSBCCEEEEEE
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhcc----CCCCccEEEEEEe
Confidence            789999999999999999999999999999998865431       12346789999999953    5899999999998


Q ss_pred             ccCCCcceEEEEEecc-c-ccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCC
Q 013220          109 HAGPNGQHLCMVLEFL-G-DSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKD  186 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~-~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~  186 (447)
                      ..    +..++||||+ + +++.+++...  ..+++..++.++.||+.||+|||++ ||+||||||+|||+..       
T Consensus        80 ~~----~~~~lv~e~~~~~~~l~~~~~~~--~~l~e~~~~~~~~qi~~al~~lH~~-~iiHrDiKp~NIll~~-------  145 (273)
T d1xwsa_          80 RP----DSFVLILERPEPVQDLFDFITER--GALQEELARSFFWQVLEAVRHCHNC-GVLHRDIKDENILIDL-------  145 (273)
T ss_dssp             CS----SEEEEEEECCSSEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEET-------
T ss_pred             eC----CeEEEEEEeccCcchHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC-CCccccCcccceEEec-------
Confidence            54    6899999999 4 5677777654  4599999999999999999999996 9999999999999942       


Q ss_pred             cccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccc
Q 013220          187 PIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA  266 (447)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~  266 (447)
                                                                                      ....+||+|||+|...
T Consensus       146 ----------------------------------------------------------------~~~~vkl~DFG~a~~~  161 (273)
T d1xwsa_         146 ----------------------------------------------------------------NRGELKLIDFGSGALL  161 (273)
T ss_dssp             ----------------------------------------------------------------TTTEEEECCCTTCEEC
T ss_pred             ----------------------------------------------------------------CCCeEEECccccceec
Confidence                                                                            2357999999999755


Q ss_pred             ccc-cccCCCCCCccChHHhhcCCC-CccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhh
Q 013220          267 NKQ-FAEEIQTRQYRAPEVILRAGY-SFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  344 (447)
Q Consensus       267 ~~~-~~~~~gt~~y~aPE~l~~~~~-~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (447)
                      ... .+..+||+.|+|||++.+..+ +.++|||||||++|+|++|+.||...+                           
T Consensus       162 ~~~~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~---------------------------  214 (273)
T d1xwsa_         162 KDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE---------------------------  214 (273)
T ss_dssp             CSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH---------------------------
T ss_pred             ccccccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCch---------------------------
Confidence            433 355689999999999988765 577999999999999999999996421                           


Q ss_pred             CCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          345 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                 .+......++..+++++.+||.+||+.||++|||++|+|+||||++..
T Consensus       215 ---------------------------~i~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~hp~~~~~~  262 (273)
T d1xwsa_         215 ---------------------------EIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVL  262 (273)
T ss_dssp             ---------------------------HHHHCCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSCC
T ss_pred             ---------------------------HHhhcccCCCCCCCHHHHHHHHHHccCCHhHCcCHHHHhcCHhhCCCC
Confidence                                       111112224445677899999999999999999999999999998643

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=3.2e-49  Score=381.87  Aligned_cols=278  Identities=26%  Similarity=0.462  Sum_probs=214.1

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|++.++||+|+||+||+|++. +++.||||+++...   .....+.+|+.+++.+      +|+||+++++.|...  
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l------~hpnIv~~~~~~~~~--   72 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNN-YGETFALKKIRLEKEDEGIPSTTIREISILKEL------KHSNIVKLYDVIHTK--   72 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEET-TSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGC------CCTTBCCEEEEEECS--
T ss_pred             CCceeccEEecCCCcEEEEEEeC-CCCEEEEEEEehhhcChHHHHHHHHHHHHHHhC------CCCcEEeeeeecccC--
Confidence            58999999999999999999985 78999999886542   2346788999999999      799999999999854  


Q ss_pred             CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          113 NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       113 ~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                        ...+++||++++.+...+.... ..+++..++.++.||+.||+|||+. ||+||||||+|||+               
T Consensus        73 --~~~~i~~e~~~~~~~~~~~~~~-~~l~~~~~~~i~~qi~~~L~~LH~~-~IvHrDiKp~NIll---------------  133 (286)
T d1ob3a_          73 --KRLVLVFEHLDQDLKKLLDVCE-GGLESVTAKSFLLQLLNGIAYCHDR-RVLHRDLKPQNLLI---------------  133 (286)
T ss_dssp             --SCEEEEEECCSEEHHHHHHTST-TCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEE---------------
T ss_pred             --CceeEEEEeehhhhHHHHHhhc-CCcchhhhHHHHHHHHHHHHHhccC-cEEecCCCCceeeE---------------
Confidence              6899999999666665554432 5699999999999999999999996 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc---
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---  269 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~---  269 (447)
                                                                               +.++.+||+|||.+.....+   
T Consensus       134 ---------------------------------------------------------~~~~~~kl~DfG~a~~~~~~~~~  156 (286)
T d1ob3a_         134 ---------------------------------------------------------NREGELKIADFGLARAFGIPVRK  156 (286)
T ss_dssp             ---------------------------------------------------------CTTSCEEECCTTHHHHHCC----
T ss_pred             ---------------------------------------------------------cCCCCEEecccccceecccCccc
Confidence                                                                     44678999999999765433   


Q ss_pred             cccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          270 FAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      ....++++.|+|||.+.+. .++.++|||||||++|+|++|+.||.+.      +..+.+..+....|..+.........
T Consensus       157 ~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~  230 (286)
T d1ob3a_         157 YTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGV------SEADQLMRIFRILGTPNSKNWPNVTE  230 (286)
T ss_dssp             -----CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCCCCTTTSTTGGG
T ss_pred             cceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCC------CHHHHHHHHHHhhCCCChhhccchhh
Confidence            2334689999999999865 5689999999999999999999999765      46677777888887766433211110


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccc
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~  417 (447)
                      ....   ...        ......  ..........++.+.|||.+||+.||++||||+|+|+||||++
T Consensus       231 ~~~~---~~~--------~~~~~~--~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~Hp~f~~  286 (286)
T d1ob3a_         231 LPKY---DPN--------FTVYEP--LPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEHAYFKE  286 (286)
T ss_dssp             STTC---CTT--------CCCCCC--CCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGGC
T ss_pred             hhhc---ccc--------cccccC--cchhhhcccCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCc
Confidence            0000   000        000000  0001133445678999999999999999999999999999985

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.4e-49  Score=389.49  Aligned_cols=286  Identities=25%  Similarity=0.405  Sum_probs=221.0

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC--Cc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP--NG  114 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~--~~  114 (447)
                      +|+..++||+|+||+||+|++..+++.||||+++.+..   ...+|+++|+.+      +|+||++++++|.....  +.
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~---~~~~Ei~il~~l------~h~niv~~~~~~~~~~~~~~~   91 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR---FKNRELQIMRKL------DHCNIVRLRYFFYSSGEKKDE   91 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS---SCCHHHHHHHHC------CCTTBCCEEEEEEEC--CCSC
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccch---HHHHHHHHHHhc------CCCCCCcEEEEEEecCccCCc
Confidence            69999999999999999999999999999999876542   345799999999      79999999999876542  34


Q ss_pred             ceEEEEEecccccHHHHHHh--hccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          115 QHLCMVLEFLGDSLLRLIKY--SRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       115 ~~~~lvmE~~~~~L~~~~~~--~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      .++|+|||||++++...+..  .....+++..++.+++||+.||+|||++ ||+||||||+|||+..             
T Consensus        92 ~~~~lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~-~IiHrDiKp~NILl~~-------------  157 (350)
T d1q5ka_          92 VYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF-GICHRDIKPQNLLLDP-------------  157 (350)
T ss_dssp             CEEEEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT-TEECCCCCGGGEEECT-------------
T ss_pred             eEEEEEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhc-CCcccCCCcceEEEec-------------
Confidence            57999999997666555532  2234699999999999999999999996 9999999999999932             


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc--ccc
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQF  270 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~--~~~  270 (447)
                                                                                ....+||+|||++....  ...
T Consensus       158 ----------------------------------------------------------~~~~~kl~DFG~a~~~~~~~~~  179 (350)
T d1q5ka_         158 ----------------------------------------------------------DTAVLKLCDFGSAKQLVRGEPN  179 (350)
T ss_dssp             ----------------------------------------------------------TTCCEEECCCTTCEECCTTSCC
T ss_pred             ----------------------------------------------------------CCCceeEecccchhhccCCccc
Confidence                                                                      12468999999997543  334


Q ss_pred             ccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          271 AEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      ...+||+.|+|||.+.+. .|+.++|||||||++|+|++|..||...      +....+..+.+.+|..+.+........
T Consensus       180 ~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~------~~~~~l~~i~~~~g~~~~~~~~~~~~~  253 (350)
T d1q5ka_         180 VSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGD------SGVDQLVEIIKVLGTPTREQIREMNPN  253 (350)
T ss_dssp             CSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCS------SHHHHHHHHHHHHCCCCHHHHHHHCC-
T ss_pred             ccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCC------CHHHHHHHHHHHhCCChHHhhhhhccc
Confidence            456899999999998764 6899999999999999999999999766      467788888899999886654221111


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccccCCc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR  422 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~~~~  422 (447)
                      ....       .........+..      ......++++.+||.+||+.||++||||+|+|+||||++.....
T Consensus       254 ~~~~-------~~~~~~~~~~~~------~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~~~~  313 (350)
T d1q5ka_         254 YTEF-------KFPQIKAHPWTK------VFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRDPN  313 (350)
T ss_dssp             --CC-------CCCCCCCCCGGG------TSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGGCTT
T ss_pred             hhhc-------cccccccCchhh------hcccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhccccCCC
Confidence            0000       000000000000      01233466899999999999999999999999999999865443

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-48  Score=384.80  Aligned_cols=296  Identities=29%  Similarity=0.468  Sum_probs=221.5

Q ss_pred             Ccccc-CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccc
Q 013220           30 GDLFN-GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDH  106 (447)
Q Consensus        30 g~~~~-~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~  106 (447)
                      |+++. +.||++.++||+|+||+||+|++..+++.||||++...  ....+.+.+|+++|+.+      +|+||++++++
T Consensus         1 ~~~~~i~~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l------~hp~iv~~~~~   74 (345)
T d1pmea_           1 GQVFDVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRF------RHENIIGINDI   74 (345)
T ss_dssp             CCCCCCCTTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHC------CCTTBCCCCEE
T ss_pred             CCccCcCCCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHc------CCCCCCcEEEE
Confidence            44444 57899999999999999999999999999999988643  33456788999999999      78999999999


Q ss_pred             ccccCC-CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCC
Q 013220          107 FKHAGP-NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK  185 (447)
Q Consensus       107 ~~~~~~-~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~  185 (447)
                      +....- .....|++|++++++|.+++...   .+++..++.++.||+.||+|||++ ||+||||||+|||+        
T Consensus        75 ~~~~~~~~~~~~~l~~~~~~g~L~~~l~~~---~l~~~~i~~i~~qil~al~yLH~~-~iiHRDIKp~NILl--------  142 (345)
T d1pmea_          75 IRAPTIEQMKDVYLVTHLMGADLYKLLKTQ---HLSNDHICYFLYQILRGLKYIHSA-NVLHRDLKPSNLLL--------  142 (345)
T ss_dssp             ECCSSTTTCCCEEEEEECCCEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEE--------
T ss_pred             EeeccccccceEEEEEeecCCchhhhhhcC---CCCHHHHHHHHHHHHHHHHHHHHC-CCcCCCCCcceEEE--------
Confidence            876432 23456677666699999998643   599999999999999999999997 99999999999999        


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccc
Q 013220          186 DPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR  265 (447)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~  265 (447)
                                                                                      +..+.+||+|||++..
T Consensus       143 ----------------------------------------------------------------~~~~~~kl~DfG~a~~  158 (345)
T d1pmea_         143 ----------------------------------------------------------------NTTCDLKICDFGLARV  158 (345)
T ss_dssp             ----------------------------------------------------------------CTTCCEEECCCTTCEE
T ss_pred             ----------------------------------------------------------------CCCCCEEEcccCceee
Confidence                                                                            4467899999999965


Q ss_pred             ccc------ccccCCCCCCccChHHhhc-CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCC
Q 013220          266 ANK------QFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKM  338 (447)
Q Consensus       266 ~~~------~~~~~~gt~~y~aPE~l~~-~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~  338 (447)
                      ...      .....+||+.|+|||++.. ..++.++||||+||++|+|++|+.||...      +............+.+
T Consensus       159 ~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~------~~~~~~~~~~~~~~~~  232 (345)
T d1pmea_         159 ADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGK------HYLDQLNHILGILGSP  232 (345)
T ss_dssp             CCGGGCBCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCSC
T ss_pred             ccCCCccceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCC------CHHHHHHHHhhhccCC
Confidence            432      1234578999999999855 46789999999999999999999999776      3566667777777776


Q ss_pred             CHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          339 PRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                      ..............    .............+...       ....+.++.+||.+||+.||.+||||+|+|+||||++.
T Consensus       233 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-------~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~hpf~~~~  301 (345)
T d1pmea_         233 SQEDLNCIINLKAR----NYLLSLPHKNKVPWNRL-------FPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQY  301 (345)
T ss_dssp             CHHHHHTCCCHHHH----HHHHTSCCCCCCCHHHH-------CTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTT
T ss_pred             Chhhhhhhhhhhhh----cccccCCccCCCCHHHh-------CCCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhccC
Confidence            65543222111100    00000000000111111       12345678999999999999999999999999999977


Q ss_pred             cCCccc
Q 013220          419 NSTRDE  424 (447)
Q Consensus       419 ~~~~~~  424 (447)
                      ......
T Consensus       302 ~~~~~~  307 (345)
T d1pmea_         302 YDPSDE  307 (345)
T ss_dssp             CCGGGS
T ss_pred             CCCccC
Confidence            655443

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-48  Score=381.86  Aligned_cols=286  Identities=24%  Similarity=0.388  Sum_probs=215.4

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC-
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG-  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~-  111 (447)
                      ++|++.++||+|+||+||+|++..+++.||||++....   .....+.+|+++|+.+      +|+||+++++.+.... 
T Consensus        10 ~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l------~h~nii~~~~~~~~~~~   83 (318)
T d3blha1          10 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLL------KHENVVNLIEICRTKAS   83 (318)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHC------CCTTBCCEEEEEEC---
T ss_pred             CCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHh------cCCCccceEeeeecccc
Confidence            79999999999999999999999999999999875442   2345678999999999      7889999999876532 


Q ss_pred             ---CCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          112 ---PNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       112 ---~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                         ....++|+|||||++.+...... ....+++..++.++.|++.||+|||++ ||+||||||+|||+           
T Consensus        84 ~~~~~~~~~~iv~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~qil~~l~~lH~~-~ivHrDlKp~NILl-----------  150 (318)
T d3blha1          84 PYNRCKGSIYLVFDFCEHDLAGLLSN-VLVKFTLSEIKRVMQMLLNGLYYIHRN-KILHRDMKAANVLI-----------  150 (318)
T ss_dssp             -------CEEEEEECCCEEHHHHHTC-TTCCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEE-----------
T ss_pred             cccccCceEEEEEeccCCCccchhhh-cccccccHHHHHHHHHHHHHHHHhccC-CEEecCcCchheee-----------
Confidence               12457999999996666655543 235689999999999999999999996 99999999999999           


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc-
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN-  267 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~-  267 (447)
                                                                                   +.++.+||+|||++.... 
T Consensus       151 -------------------------------------------------------------~~~~~~kl~dfg~~~~~~~  169 (318)
T d3blha1         151 -------------------------------------------------------------TRDGVLKLADFGLARAFSL  169 (318)
T ss_dssp             -------------------------------------------------------------CTTSCEEECCCTTCEECCC
T ss_pred             -------------------------------------------------------------cCCCcEEeeecceeeeccc
Confidence                                                                         446779999999996443 


Q ss_pred             ------cccccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCH
Q 013220          268 ------KQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  340 (447)
Q Consensus       268 ------~~~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~  340 (447)
                            ......+||+.|+|||++.+. .|+.++|||||||++|+|++|+.||.+.      ++......+.+..+..+.
T Consensus       170 ~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~------~~~~~~~~i~~~~~~~~~  243 (318)
T d3blha1         170 AKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGN------TEQHQLALISQLCGSITP  243 (318)
T ss_dssp             -----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCCCCT
T ss_pred             ccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCC------CHHHHHHHHHHhcCCCCh
Confidence                  122334789999999999865 6899999999999999999999999765      578888889999988886


Q ss_pred             HhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccc
Q 013220          341 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  417 (447)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~  417 (447)
                      +............ ....    ...........+..     ...++.+.|||.+||++||++||||+|+|+||||+.
T Consensus       244 ~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~-----~~~~~~~~dLl~~mL~~dP~~R~sa~elL~Hpff~~  310 (318)
T d3blha1         244 EVWPNVDNYELYE-KLEL----VKGQKRKVKDRLKA-----YVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWS  310 (318)
T ss_dssp             TTSTTCCCC--------C----CSSCCBCHHHHHHH-----HHCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGSS
T ss_pred             hhccccchhhhhh-hhcc----cccccccchhhhcc-----ccCCHHHHHHHHHHCcCChhHCcCHHHHHcChhhcc
Confidence            6532222211110 0000    00000011111110     112457789999999999999999999999999984

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=8.9e-49  Score=386.02  Aligned_cols=302  Identities=24%  Similarity=0.369  Sum_probs=223.9

Q ss_pred             CCCCCCCccccccCccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCC
Q 013220           17 DSYRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSN   96 (447)
Q Consensus        17 ~~~~~~~~~~~~~g~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~   96 (447)
                      ++|....++++..|+.   ++|+++++||+|+||+||+|++..+++.||||+++...  .+.+.+|+++|+.+.     +
T Consensus        19 ~~~~~~~~~~~~~~~~---d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~--~~~~~~Ei~il~~l~-----~   88 (328)
T d3bqca1          19 REYWDYESHVVEWGNQ---DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK--KKKIKREIKILENLR-----G   88 (328)
T ss_dssp             HHHHCGGGCCCCCCCG---GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSSC--HHHHHHHHHHHHHHT-----T
T ss_pred             CccchhhhcccCCCCC---cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHHH--HHHHHHHHHHHHhcc-----C
Confidence            4454455667766643   68999999999999999999999999999999987543  356889999999995     6


Q ss_pred             cceeeeecccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCe
Q 013220           97 EKCVIRLIDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENI  175 (447)
Q Consensus        97 ~~~Iv~~~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Ni  175 (447)
                      |+||++++++|...  ....+++||||| +++|....     +.+++..++.+++||+.||+|||++ ||+||||||+||
T Consensus        89 hpnIv~~~~~~~~~--~~~~~~~v~e~~~~~~L~~~~-----~~l~e~~i~~i~~qil~aL~~LH~~-gIvHrDiKp~NI  160 (328)
T d3bqca1          89 GPNIITLADIVKDP--VSRTPALVFEHVNNTDFKQLY-----QTLTDYDIRFYMYEILKALDYCHSM-GIMHRDVKPHNV  160 (328)
T ss_dssp             STTBCCEEEEEECT--TTCSEEEEEECCCSCBGGGTT-----TSCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGE
T ss_pred             CCCCcEEEEEEEec--CCCceeEEEeecCCCcHHHHh-----cCCCHHHHHHHHHHHHHHHHHHhhc-ccccccccccce
Confidence            99999999998754  346799999999 67775432     4599999999999999999999996 999999999999


Q ss_pred             EeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccce
Q 013220          176 LLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRC  255 (447)
Q Consensus       176 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (447)
                      |+..                                                                       ....+
T Consensus       161 Li~~-----------------------------------------------------------------------~~~~v  169 (328)
T d3bqca1         161 MIDH-----------------------------------------------------------------------EHRKL  169 (328)
T ss_dssp             EEET-----------------------------------------------------------------------TTTEE
T ss_pred             EEcC-----------------------------------------------------------------------CCCee
Confidence            9943                                                                       13458


Q ss_pred             eEeecCcccccc--cccccCCCCCCccChHHhhcC-CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHH
Q 013220          256 KVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMM  332 (447)
Q Consensus       256 kL~Dfg~a~~~~--~~~~~~~gt~~y~aPE~l~~~-~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~  332 (447)
                      +|+|||.|....  ......++|+.|+|||.+.+. .++.++||||+||++|+|++|..||....     ........+.
T Consensus       170 kl~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~-----~~~~~~~~i~  244 (328)
T d3bqca1         170 RLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGH-----DNYDQLVRIA  244 (328)
T ss_dssp             EECCGGGCEECCTTCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCS-----SHHHHHHHHH
T ss_pred             eecccccceeccCCCcccccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCc-----hhHHHHHHHH
Confidence            999999997554  334556789999999998875 47999999999999999999999997653     3445556666


Q ss_pred             HHhCCCCHH-hh-hCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHh
Q 013220          333 ELIGKMPRK-IA-IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCL  410 (447)
Q Consensus       333 ~~~g~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL  410 (447)
                      ..+|..... +. .........+......     ..........  .......+++++.|||++||++||++||||+|+|
T Consensus       245 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L  317 (328)
T d3bqca1         245 KVLGTEDLYDYIDKYNIELDPRFNDILGR-----HSRKRWERFV--HSENQHLVSPEALDFLDKLLRYDHQSRLTAREAM  317 (328)
T ss_dssp             HHHCHHHHHHHHHHTTCCCCGGGGGTCCC-----CCCCCGGGGC--CTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred             HHHCCchhhhhhhhcccccCcccchhccc-----ccccchhhcc--cccccccCCHHHHHHHHHHccCChhHCcCHHHHh
Confidence            666643211 11 1111111111000000     0000011110  0012234567899999999999999999999999


Q ss_pred             cCccccccc
Q 013220          411 QHPWLSLRN  419 (447)
Q Consensus       411 ~hp~f~~~~  419 (447)
                      +||||+...
T Consensus       318 ~Hp~F~~v~  326 (328)
T d3bqca1         318 EHPYFYTVV  326 (328)
T ss_dssp             TSGGGTTSC
T ss_pred             cCcccCCCC
Confidence            999998643

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-48  Score=384.77  Aligned_cols=301  Identities=27%  Similarity=0.424  Sum_probs=229.3

Q ss_pred             Ccccccc-Ccccc-CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCc
Q 013220           23 GYHAVRV-GDLFN-GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNE   97 (447)
Q Consensus        23 ~~~~~~~-g~~~~-~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~   97 (447)
                      +|+.+.+ +++.+ .+||++.++||+|+||+||+|++..+++.||||+++..   ....+.+.+|+++|+.+      +|
T Consensus         3 ~~~~~~~~~~~~~~~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l------~h   76 (348)
T d2gfsa1           3 TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHM------KH   76 (348)
T ss_dssp             CEEEEECSSSEEEEETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHC------CC
T ss_pred             CcEEEecCCccccCCCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhc------CC
Confidence            4555555 55665 47999999999999999999999999999999998643   23345788999999999      78


Q ss_pred             ceeeeecccccccCC--CcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCe
Q 013220           98 KCVIRLIDHFKHAGP--NGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENI  175 (447)
Q Consensus        98 ~~Iv~~~~~~~~~~~--~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Ni  175 (447)
                      +||++++++|.....  +....+++|++++++|.+++..   +.+++..++.++.||+.||+|||++ ||+||||||+||
T Consensus        77 ~~iv~~~~~~~~~~~~~~~~~~~i~~~~~gg~L~~~~~~---~~l~e~~~~~i~~qil~aL~~LH~~-giiHrDiKp~NI  152 (348)
T d2gfsa1          77 ENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSA-DIIHRDLKPSNL  152 (348)
T ss_dssp             TTBCCCSEEECSCSSTTTCCCCEEEEECCSEEHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGE
T ss_pred             CCeeeEEEEEeeccccccCceEEEEEeecCCchhhhccc---ccccHHHHHHHHHHHHHHHHHHHhC-CCcccccCCccc
Confidence            999999998865431  2334555555559999988743   4599999999999999999999997 999999999999


Q ss_pred             EeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccce
Q 013220          176 LLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRC  255 (447)
Q Consensus       176 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (447)
                      |+                                                                        +.++.+
T Consensus       153 Li------------------------------------------------------------------------~~~~~~  160 (348)
T d2gfsa1         153 AV------------------------------------------------------------------------NEDCEL  160 (348)
T ss_dssp             EE------------------------------------------------------------------------CTTCCE
T ss_pred             cc------------------------------------------------------------------------cccccc
Confidence            99                                                                        446789


Q ss_pred             eEeecCcccccccccccCCCCCCccChHHhhcCC-CCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHH
Q 013220          256 KVVDFGNACRANKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMEL  334 (447)
Q Consensus       256 kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~l~~~~-~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~  334 (447)
                      +++|||.+...........|++.|+|||.+.+.. ++.++|||||||++|+|++|+.||.+.      +.......+...
T Consensus       161 kl~dfg~a~~~~~~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~------~~~~~~~~i~~~  234 (348)
T d2gfsa1         161 KILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT------DHIDQLKLILRL  234 (348)
T ss_dssp             EECCC----CCTGGGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHH
T ss_pred             cccccchhcccCcccccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCC------CHHHHHHHHHHh
Confidence            9999999988777777788999999999987764 589999999999999999999999876      467778888888


Q ss_pred             hCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcc
Q 013220          335 IGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW  414 (447)
Q Consensus       335 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~  414 (447)
                      .+..+.++........... ....   ........+...       ....++++.+||.+||+.||++||||+|+|+|||
T Consensus       235 ~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~-------~~~~s~~~~dli~~mL~~dP~~R~ta~elL~Hp~  303 (348)
T d2gfsa1         235 VGTPGAELLKKISSESARN-YIQS---LTQMPKMNFANV-------FIGANPLAVDLLEKMLVLDSDKRITAAQALAHAY  303 (348)
T ss_dssp             HCCCCHHHHTTCCCHHHHH-HHTT---SCCCCCCCHHHH-------STTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGG
T ss_pred             cCCCChHHhhhccchhhhh-hhhh---cccCCCcchhhh-------cCCCCHHHHHHHHHHCcCChhhCcCHHHHhcCHh
Confidence            8888776643322211000 0000   000000011111       1234668899999999999999999999999999


Q ss_pred             cccccCCc
Q 013220          415 LSLRNSTR  422 (447)
Q Consensus       415 f~~~~~~~  422 (447)
                      |++.....
T Consensus       304 f~~~~~~~  311 (348)
T d2gfsa1         304 FAQYHDPD  311 (348)
T ss_dssp             GTTTCCTT
T ss_pred             hCCCCCCc
Confidence            99865443

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-48  Score=372.43  Aligned_cols=280  Identities=28%  Similarity=0.408  Sum_probs=217.5

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++|+++++||+|+||+||+|++..+++.||||+++...   .....+.+|+++++.+      +|+||++++++|...  
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l------~h~niv~~~~~~~~~--   73 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKEL------KHKNIVRLHDVLHSD--   73 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTC------CCTTBCCEEEEEECS--
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhc------CcCCEEeeccccccc--
Confidence            58999999999999999999999999999999986432   3456788999999998      889999999999864  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                        ...++||+++ ++++..++..  .+.+++..++.++.|++.||+|||++ ||+||||||+|||+              
T Consensus        74 --~~~~iv~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~q~~~aL~~lH~~-~IvHrDiKP~NIli--------------  134 (292)
T d1unla_          74 --KKLTLVFEFCDQDLKKYFDSC--NGDLDPEIVKSFLFQLLKGLGFCHSR-NVLHRDLKPQNLLI--------------  134 (292)
T ss_dssp             --SEEEEEEECCSEEHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEE--------------
T ss_pred             --cceeEEeeecccccccccccc--ccccchhHHHHHHHHHHHHHHHhhcC-CEeeecccCccccc--------------
Confidence              6899999999 6666655543  35689999999999999999999996 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                +....+||+|||.+......  
T Consensus       135 ----------------------------------------------------------~~~~~~kl~DFG~a~~~~~~~~  156 (292)
T d1unla_         135 ----------------------------------------------------------NRNGELKLANFGLARAFGIPVR  156 (292)
T ss_dssp             ----------------------------------------------------------CTTCCEEECCCTTCEECCSCCS
T ss_pred             ----------------------------------------------------------ccCCceeeeecchhhcccCCCc
Confidence                                                                      34567999999999765433  


Q ss_pred             -cccCCCCCCccChHHhhcCC-CCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCC
Q 013220          270 -FAEEIQTRQYRAPEVILRAG-YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  347 (447)
Q Consensus       270 -~~~~~gt~~y~aPE~l~~~~-~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  347 (447)
                       .....++..|+|||.+.+.. ++.++|||||||++|+|++|+.||....     +....+..+....+...+.......
T Consensus       157 ~~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  231 (292)
T d1unla_         157 CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGN-----DVDDQLKRIFRLLGTPTEEQWPSMT  231 (292)
T ss_dssp             CCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCS-----SHHHHHHHHHHHHCCCCTTTCTTGG
T ss_pred             cceeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCC-----CHHHHHHHHHhhcCCCChhhhhhhh
Confidence             23346789999999998765 6899999999999999999999986543     4566677777777776654321111


Q ss_pred             CccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCcccccc
Q 013220          348 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  418 (447)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~  418 (447)
                      ...++.          ..   ................++.+.+||.+||+.||.+||||+|+|+||||++-
T Consensus       232 ~~~~~~----------~~---~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~Hp~f~~~  289 (292)
T d1unla_         232 KLPDYK----------PY---PMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFSDF  289 (292)
T ss_dssp             GSTTCC----------CC---CCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGSSC
T ss_pred             hccccc----------cc---ccccccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHhcChhhcCC
Confidence            111000          00   00000011112334456789999999999999999999999999999864

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-48  Score=376.21  Aligned_cols=247  Identities=22%  Similarity=0.320  Sum_probs=205.9

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      ++|++.++||+|+||+||+|++..+++.||||+++.+....+.+.+|+++++.+      +|||||++++++..    +.
T Consensus        17 ~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~E~~il~~l------~HpnIv~~~~~~~~----~~   86 (287)
T d1opja_          17 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEI------KHPNLVQLLGVCTR----EP   86 (287)
T ss_dssp             GGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCSCHHHHHHHHHHHHHC------CCTTBCCEEEEECS----SS
T ss_pred             HHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccchHHHHHHHHHHHHhC------CCCCEecCCccEee----CC
Confidence            689999999999999999999999999999999987766677899999999999      89999999999875    36


Q ss_pred             eEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          116 HLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       116 ~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      .+++||||| +++|..++.......+++..+..++.||+.||+|||++ ||+||||||+|||+                 
T Consensus        87 ~~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~-~iiHrDlKp~NILl-----------------  148 (287)
T d1opja_          87 PFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK-NFIHRDLAARNCLV-----------------  148 (287)
T ss_dssp             SCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEE-----------------
T ss_pred             eeEEEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHC-CcccCccccCeEEE-----------------
Confidence            899999999 88999988765556789999999999999999999997 99999999999999                 


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccc----
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF----  270 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~----  270 (447)
                                                                             +.++.+||+|||+|.......    
T Consensus       149 -------------------------------------------------------~~~~~~Kl~DFG~a~~~~~~~~~~~  173 (287)
T d1opja_         149 -------------------------------------------------------GENHLVKVADFGLSRLMTGDTYTAH  173 (287)
T ss_dssp             -------------------------------------------------------CGGGCEEECCCCCTTTCCSSSSEEE
T ss_pred             -------------------------------------------------------CCCCcEEEccccceeecCCCCceee
Confidence                                                                   446789999999997654322    


Q ss_pred             ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          271 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      ....|++.|+|||++.+..|+.++|||||||++|+|++|..||....      +...+...... +              
T Consensus       174 ~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~------~~~~~~~~i~~-~--------------  232 (287)
T d1opja_         174 AGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGI------DLSQVYELLEK-D--------------  232 (287)
T ss_dssp             TTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTC------CHHHHHHHHHT-T--------------
T ss_pred             ccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcc------hHHHHHHHHhc-C--------------
Confidence            22246889999999999999999999999999999999877765431      22222111110 0              


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                               ..+..+...++++.+||.+||+.||++|||++|+++
T Consensus       233 -------------------------~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ei~~  268 (287)
T d1opja_         233 -------------------------YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQ  268 (287)
T ss_dssp             -------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -------------------------CCCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHH
Confidence                                     012244556788999999999999999999999976

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3.6e-48  Score=372.86  Aligned_cols=259  Identities=25%  Similarity=0.362  Sum_probs=203.2

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh----HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA----AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~----~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|++.+.||+|+||+||+|++..+++.||||+++..    ......+.+|+++++.+      +||||+++++++....
T Consensus         7 drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~------~hpniv~~~~~~~~~~   80 (277)
T d1o6ya_           7 DRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAAL------NHPAIVAVYDTGEAET   80 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTC------CCTTBCCEEEEEEEEC
T ss_pred             ceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhc------CCCCCCcccceeeecc
Confidence            7899999999999999999999999999999998643    23455788999999998      8999999999998876


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                      ..+...|+||||| |++|...+...  ..+++.+++.++.||+.||+|||++ ||+||||||+|||+.            
T Consensus        81 ~~~~~~~lvmE~~~g~~L~~~~~~~--~~l~~~~~~~i~~qi~~al~~lH~~-~iiHrDiKP~NIll~------------  145 (277)
T d1o6ya_          81 PAGPLPYIVMEYVDGVTLRDIVHTE--GPMTPKRAIEVIADACQALNFSHQN-GIIHRDVKPANIMIS------------  145 (277)
T ss_dssp             SSSEEEEEEEECCCEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEE------------
T ss_pred             CCCceEEEEEECCCCCEehhhhccc--CCCCHHHHHHHHHHHHHHHHHHHhC-CccCccccCcccccC------------
Confidence            5667899999999 88998877654  3599999999999999999999996 999999999999993            


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc--
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--  268 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~--  268 (447)
                                                                                  ....++++|||.+.....  
T Consensus       146 ------------------------------------------------------------~~~~~~l~d~~~~~~~~~~~  165 (277)
T d1o6ya_         146 ------------------------------------------------------------ATNAVKVMDFGIARAIADSG  165 (277)
T ss_dssp             ------------------------------------------------------------TTSCEEECCCTTCEECC---
T ss_pred             ------------------------------------------------------------ccccceeehhhhhhhhcccc
Confidence                                                                        356789999998864332  


Q ss_pred             ----ccccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhh
Q 013220          269 ----QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  344 (447)
Q Consensus       269 ----~~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (447)
                          .....+||+.|+|||++.+..++.++|||||||++|+|++|+.||...+      .......+... +..+.    
T Consensus       166 ~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~------~~~~~~~~~~~-~~~~~----  234 (277)
T d1o6ya_         166 NSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDS------PVSVAYQHVRE-DPIPP----  234 (277)
T ss_dssp             -------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHC-CCCCG----
T ss_pred             ccccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcC------HHHHHHHHHhc-CCCCC----
Confidence                2334579999999999999899999999999999999999999997542      22111111110 00000    


Q ss_pred             CCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCccccccc
Q 013220          345 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  419 (447)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp~f~~~~  419 (447)
                                                       ......+++++.+||.+||+.||++||+..+.|.|+|.+.++
T Consensus       235 ---------------------------------~~~~~~~s~~l~~li~~~L~~dp~~R~~sa~~l~~~l~r~~n  276 (277)
T d1o6ya_         235 ---------------------------------SARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHN  276 (277)
T ss_dssp             ---------------------------------GGTSSSCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHC
T ss_pred             ---------------------------------chhccCCCHHHHHHHHHHccCCHhHCHhHHHHHHHHHHHHhC
Confidence                                             012234567899999999999999999666666788887644

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-48  Score=371.06  Aligned_cols=251  Identities=23%  Similarity=0.380  Sum_probs=204.5

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      .++|++.++||+|+||+||+|++. ++..||||+++......+.+.+|+++++.+      +|+|||++++++..     
T Consensus        12 ~~~~~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l------~HpnIv~~~g~~~~-----   79 (272)
T d1qpca_          12 RETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLKQGSMSPDAFLAEANLMKQL------QHQRLVRLYAVVTQ-----   79 (272)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTSSCHHHHHHHHHHHHHC------CCTTBCCEEEEECS-----
T ss_pred             HHHeEEeEEEecCCCcEEEEEEEC-CCCEEEEEEEccCcCCHHHHHHHHHHHHhC------CCCCEeEEEeeecc-----
Confidence            368999999999999999999875 578899999987766677899999999999      79999999998753     


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ..+++||||| +++|.+.+.......+++..+..++.||+.||+|||++ +|+||||||+|||+                
T Consensus        80 ~~~~iv~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~-~ivHrDiKp~NIll----------------  142 (272)
T d1qpca_          80 EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER-NYIHRDLRAANILV----------------  142 (272)
T ss_dssp             SSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEE----------------
T ss_pred             CCeEEEEEeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CcccCccchhheee----------------
Confidence            3578999999 88998877554444689999999999999999999997 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc----
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----  269 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~----  269 (447)
                                                                              +.++.+||+|||+|......    
T Consensus       143 --------------------------------------------------------~~~~~~Kl~DFGla~~~~~~~~~~  166 (272)
T d1qpca_         143 --------------------------------------------------------SDTLSCKIADFGLARLIEDNEYTA  166 (272)
T ss_dssp             --------------------------------------------------------CTTSCEEECCCTTCEECSSSCEEC
T ss_pred             --------------------------------------------------------ecccceeeccccceEEccCCcccc
Confidence                                                                    44678999999999765432    


Q ss_pred             cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCc
Q 013220          270 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  349 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (447)
                      .....||+.|+|||++.+..++.++|||||||++|+|++|..|+....     .....+..+..  +             
T Consensus       167 ~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~-----~~~~~~~~i~~--~-------------  226 (272)
T d1qpca_         167 REGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGM-----TNPEVIQNLER--G-------------  226 (272)
T ss_dssp             CTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTC-----CHHHHHHHHHT--T-------------
T ss_pred             ccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCC-----CHHHHHHHHHh--c-------------
Confidence            233468899999999998899999999999999999999655554321     11111111110  0             


Q ss_pred             cchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc--Ccccc
Q 013220          350 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ--HPWLS  416 (447)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~--hp~f~  416 (447)
                                                .++..+..+++++.+||.+||+.||++|||++|+++  |+||+
T Consensus       227 --------------------------~~~~~p~~~~~~l~~li~~cl~~~P~~Rpt~~ei~~~L~~~ft  269 (272)
T d1qpca_         227 --------------------------YRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFT  269 (272)
T ss_dssp             --------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             --------------------------CCCCCcccChHHHHHHHHHHcCCCHhHCcCHHHHHHHhhhhhh
Confidence                                      111234456778999999999999999999999998  89986

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-47  Score=363.98  Aligned_cols=248  Identities=21%  Similarity=0.353  Sum_probs=194.7

Q ss_pred             ccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           33 FNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        33 ~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      ++..+|++.++||+|+||+||+|++. ++..||||+++......+.+.+|+++++.+      +||||+++++++...  
T Consensus         2 idp~~~~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~i~~~~~~~~~~~~E~~~l~~l------~HpnIv~~~g~~~~~--   72 (263)
T d1sm2a_           2 IDPSELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAMSEEDFIEEAEVMMKL------SHPKLVQLYGVCLEQ--   72 (263)
T ss_dssp             BCCSCEEEEEEEECCSSCCEEEEEET-TTEEEEEEECCSSSSCHHHHHHHHHHHHHC------CCTTBCCEEEEECSS--
T ss_pred             CChHHcEEEEEEeeCCCeEEEEEEEC-CCCEEEEEEECCCcCcHHHHHHHHHHHHhc------CCCCcccccceeccC--
Confidence            44578999999999999999999876 467899999887766677899999999999      899999999998754  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                        ...++||||| +++|.+++.... ..+++..+..++.|++.||+|||++ +|+||||||+||++              
T Consensus        73 --~~~~lv~E~~~~g~L~~~l~~~~-~~~~~~~~~~i~~qia~gl~~lH~~-~iiHrDlKp~Nill--------------  134 (263)
T d1sm2a_          73 --APICLVFEFMEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAYLEEA-CVIHRDLAARNCLV--------------  134 (263)
T ss_dssp             --SSCEEEEECCTTCBHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHHHHHT-TCCCTTCSGGGEEE--------------
T ss_pred             --CceEEEEEecCCCcHHHHhhccc-cCCCHHHHHHHHHHHHHHHHhhhcc-ceeecccchhheee--------------
Confidence              5799999999 889998876433 4588999999999999999999997 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                +.++.+||+|||++......  
T Consensus       135 ----------------------------------------------------------~~~~~~Kl~DFGla~~~~~~~~  156 (263)
T d1sm2a_         135 ----------------------------------------------------------GENQVIKVSDFGMTRFVLDDQY  156 (263)
T ss_dssp             ----------------------------------------------------------CGGGCEEECSCC----------
T ss_pred             ----------------------------------------------------------cCCCCeEecccchheeccCCCc
Confidence                                                                      44678999999999754422  


Q ss_pred             --cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhC-CCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCC
Q 013220          270 --FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATG-DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  346 (447)
Q Consensus       270 --~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g-~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  346 (447)
                        .....||+.|+|||++.+..|+.++|||||||++|+|+++ ..||...      +....+..+..  +          
T Consensus       157 ~~~~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~------~~~~~~~~i~~--~----------  218 (263)
T d1sm2a_         157 TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR------SNSEVVEDIST--G----------  218 (263)
T ss_dssp             --------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSC------CHHHHHHHHHH--T----------
T ss_pred             eeecceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCC------CHHHHHHHHHh--c----------
Confidence              2234689999999999999999999999999999999995 5555432      12222222111  0          


Q ss_pred             CCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          347 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                   .+...+...++++.+||.+||+.||++|||++|+|+|
T Consensus       219 -----------------------------~~~~~p~~~~~~l~~li~~cl~~~p~~Rps~~~il~~  255 (263)
T d1sm2a_         219 -----------------------------FRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQ  255 (263)
T ss_dssp             -----------------------------CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -----------------------------CCCCCccccCHHHHHHHHHHccCCHhHCcCHHHHHHH
Confidence                                         0112344456789999999999999999999999986

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-47  Score=366.65  Aligned_cols=255  Identities=21%  Similarity=0.352  Sum_probs=203.9

Q ss_pred             ccCCceEEEE-eecccCceEEEEEEeCC--CCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           33 FNGGRYIAQR-KLGWGQFSIVWLAYDTR--TSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        33 ~~~~~y~l~~-~lG~G~~g~Vy~a~~~~--~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      +..++|.+.+ +||+|+||+||+|.+..  ++..||||+++..  ....+.+.+|+++++.+      +|||||++++++
T Consensus         5 l~~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l------~HpnIv~l~g~~   78 (285)
T d1u59a_           5 LKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQL------DNPYIVRLIGVC   78 (285)
T ss_dssp             CCGGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHC------CCTTBCCEEEEE
T ss_pred             ecccCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhC------CCCCEeeEeeee
Confidence            3346799988 59999999999997653  4568999988643  34456789999999999      899999999987


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCC
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKD  186 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~  186 (447)
                      ..     +.+|+||||| +++|.+++... ...+++..+..++.||+.||+|||++ ||+||||||+||+++        
T Consensus        79 ~~-----~~~~lvmE~~~~g~L~~~l~~~-~~~l~~~~~~~i~~qi~~gL~ylH~~-~iiHrDlKp~Nill~--------  143 (285)
T d1u59a_          79 QA-----EALMLVMEMAGGGPLHKFLVGK-REEIPVSNVAELLHQVSMGMKYLEEK-NFVHRDLAARNVLLV--------  143 (285)
T ss_dssp             ES-----SSEEEEEECCTTEEHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEE--------
T ss_pred             cc-----CeEEEEEEeCCCCcHHHHhhcc-ccCCCHHHHHHHHHHHHHHHHHHHhC-CeecCcCchhheeec--------
Confidence            53     3589999999 88998876543 24689999999999999999999997 999999999999994        


Q ss_pred             cccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccc
Q 013220          187 PIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA  266 (447)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~  266 (447)
                                                                                      ..+.+||+|||++...
T Consensus       144 ----------------------------------------------------------------~~~~~Kl~DFGla~~~  159 (285)
T d1u59a_         144 ----------------------------------------------------------------NRHYAKISDFGLSKAL  159 (285)
T ss_dssp             ----------------------------------------------------------------ETTEEEECCCTTCEEC
T ss_pred             ----------------------------------------------------------------cCCceeeccchhhhcc
Confidence                                                                            3578999999999754


Q ss_pred             ccc------cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCC
Q 013220          267 NKQ------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMP  339 (447)
Q Consensus       267 ~~~------~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~  339 (447)
                      ...      .....||+.|+|||++.+..++.++|||||||++|+|++ |..||.+.+      .......+.+  |   
T Consensus       160 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~------~~~~~~~i~~--~---  228 (285)
T d1u59a_         160 GADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK------GPEVMAFIEQ--G---  228 (285)
T ss_dssp             TTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC------THHHHHHHHT--T---
T ss_pred             cccccccccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCC------HHHHHHHHHc--C---
Confidence            322      223467899999999999999999999999999999997 899997652      2222221110  1   


Q ss_pred             HHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHH---hcCcccc
Q 013220          340 RKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQC---LQHPWLS  416 (447)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~el---L~hp~f~  416 (447)
                                                          .++..+..+++++.+||.+||+.||++|||+.++   |+|+|+.
T Consensus       229 ------------------------------------~~~~~p~~~~~~l~~li~~cl~~~p~~RPs~~~i~~~L~~~~~~  272 (285)
T d1u59a_         229 ------------------------------------KRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYS  272 (285)
T ss_dssp             ------------------------------------CCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ------------------------------------CCCCCCCcCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHH
Confidence                                                1123455667899999999999999999999888   6889987


Q ss_pred             ccc
Q 013220          417 LRN  419 (447)
Q Consensus       417 ~~~  419 (447)
                      ...
T Consensus       273 ~~~  275 (285)
T d1u59a_         273 LAS  275 (285)
T ss_dssp             HHT
T ss_pred             hhh
Confidence            543

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-47  Score=361.68  Aligned_cols=246  Identities=19%  Similarity=0.331  Sum_probs=203.8

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      -++|++.++||+|+||+||+|++. ++..||||+++......+.+.+|+++++.+      +|+||+++++++...    
T Consensus         3 ~~~~~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~l~~~~~~~~~~~~Ev~~~~~l------~HpnIv~~~g~~~~~----   71 (258)
T d1k2pa_           3 PKDLTFLKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGSMSEDEFIEEAKVMMNL------SHEKLVQLYGVCTKQ----   71 (258)
T ss_dssp             CCCCCCCCCCCEETTEEEEEEEET-TTEEEEEEEEESSSSCHHHHHHHHHHHHTC------CCTTBCCEEEEECCS----
T ss_pred             hHHCEEeEEEecCCCeEEEEEEEC-CCCEEEEEEECcCcCCHHHHHHHHHHHHhc------CCCceeeEEEEEeeC----
Confidence            367999999999999999999974 788999999987766678899999999999      899999999998754    


Q ss_pred             ceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCC
Q 013220          115 QHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT  193 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~  193 (447)
                      ..+++||||+ ++++..++.... ..+++..+..++.|++.||+|||++ ||+||||||+||++                
T Consensus        72 ~~~~iv~Ey~~~g~l~~~~~~~~-~~~~~~~~~~i~~qi~~gl~~LH~~-~iiH~dlk~~Nill----------------  133 (258)
T d1k2pa_          72 RPIFIITEYMANGCLLNYLREMR-HRFQTQQLLEMCKDVCEAMEYLESK-QFLHRDLAARNCLV----------------  133 (258)
T ss_dssp             SSEEEEEECCTTEEHHHHHHSGG-GCCCHHHHHHHHHHHHHHHHHHHHT-TBCCSCCSGGGEEE----------------
T ss_pred             CceEEEEEccCCCcHHHhhhccc-cCCcHHHHHHHHHHHHHHHHHHhhc-CcccccccceeEEE----------------
Confidence            6799999999 788888765443 4588999999999999999999997 99999999999999                


Q ss_pred             CCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc----
Q 013220          194 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----  269 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~----  269 (447)
                                                                              +....+||+|||++......    
T Consensus       134 --------------------------------------------------------~~~~~~kl~DfG~a~~~~~~~~~~  157 (258)
T d1k2pa_         134 --------------------------------------------------------NDQGVVKVSDFGLSRYVLDDEYTS  157 (258)
T ss_dssp             --------------------------------------------------------CTTCCEEECCCSSCCBCSSSSCCC
T ss_pred             --------------------------------------------------------cCCCcEEECcchhheeccCCCcee
Confidence                                                                    44678999999999654322    


Q ss_pred             cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCC
Q 013220          270 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  348 (447)
Q Consensus       270 ~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  348 (447)
                      .....||+.|+|||.+.+..++.++|||||||++|+|++ |+.||...+      .......+.+  +            
T Consensus       158 ~~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~------~~~~~~~i~~--~------------  217 (258)
T d1k2pa_         158 SVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFT------NSETAEHIAQ--G------------  217 (258)
T ss_dssp             CCCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSC------HHHHHHHHHT--T------------
T ss_pred             ecccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCC------HHHHHHHHHh--C------------
Confidence            223468999999999999999999999999999999998 899997652      2222221111  0            


Q ss_pred             ccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          349 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                 .+...+...++++.+||.+||+.||++|||++++|+|
T Consensus       218 ---------------------------~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  254 (258)
T d1k2pa_         218 ---------------------------LRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSN  254 (258)
T ss_dssp             ---------------------------CCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             ---------------------------CCCCCcccccHHHHHHHHHHccCCHhHCcCHHHHHHH
Confidence                                       0112344556789999999999999999999999987

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-47  Score=371.73  Aligned_cols=251  Identities=18%  Similarity=0.277  Sum_probs=200.0

Q ss_pred             cCCceEEEEeecccCceEEEEEEeCCCC-----eEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccc
Q 013220           34 NGGRYIAQRKLGWGQFSIVWLAYDTRTS-----SYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDH  106 (447)
Q Consensus        34 ~~~~y~l~~~lG~G~~g~Vy~a~~~~~~-----~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~  106 (447)
                      ..++|++.++||+|+||+||+|++..++     ..||+|.+...  ......+.+|+++++.+.     +|||||+++++
T Consensus        35 ~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-----~HpnIv~l~~~  109 (325)
T d1rjba_          35 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLG-----SHENIVNLLGA  109 (325)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHC-----CCTTBCCEEEE
T ss_pred             CHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhc-----CCCcEeEEEEE
Confidence            3468999999999999999999876543     36999987543  334557889999999885     79999999999


Q ss_pred             ccccCCCcceEEEEEecc-cccHHHHHHhhcc---------------------CCCCHHHHHHHHHHHHHHHHHHHhhCC
Q 013220          107 FKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRY---------------------KGLELNKVREICKYILTGLDYLHRELG  164 (447)
Q Consensus       107 ~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~---------------------~~l~~~~~~~i~~qil~aL~~lH~~~g  164 (447)
                      +...    ..+++||||| +++|.+++.....                     ..+++..++.++.|++.||+|||++ |
T Consensus       110 ~~~~----~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~-~  184 (325)
T d1rjba_         110 CTLS----GPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK-S  184 (325)
T ss_dssp             ECSS----SSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             EeeC----CeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC-C
Confidence            9854    6799999999 8999999865431                     2478889999999999999999997 9


Q ss_pred             cccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCC
Q 013220          165 IIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKP  244 (447)
Q Consensus       165 IiH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (447)
                      |+||||||+||++                                                                   
T Consensus       185 IiHRDlKp~Nill-------------------------------------------------------------------  197 (325)
T d1rjba_         185 CVHRDLAARNVLV-------------------------------------------------------------------  197 (325)
T ss_dssp             EEETTCSGGGEEE-------------------------------------------------------------------
T ss_pred             eeeccCchhcccc-------------------------------------------------------------------
Confidence            9999999999999                                                                   


Q ss_pred             CccCCCcccceeEeecCccccccccc-----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCC
Q 013220          245 ERCLDGIDMRCKVVDFGNACRANKQF-----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSG  318 (447)
Q Consensus       245 ~~~~~~~~~~~kL~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~  318 (447)
                           +..+.+||+|||+|+......     ....||+.|+|||++.+..|+.++|||||||++|+|++ |..||.+.+ 
T Consensus       198 -----~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~-  271 (325)
T d1rjba_         198 -----THGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIP-  271 (325)
T ss_dssp             -----ETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC-
T ss_pred             -----ccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCC-
Confidence                 446789999999997544322     23357899999999999999999999999999999997 899997653 


Q ss_pred             CCCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhcccc
Q 013220          319 QGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDF  398 (447)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~  398 (447)
                           ....+..+.+-  .                                      .++..+...++++.+||.+||+.
T Consensus       272 -----~~~~~~~~~~~--~--------------------------------------~~~~~p~~~~~~l~~li~~cl~~  306 (325)
T d1rjba_         272 -----VDANFYKLIQN--G--------------------------------------FKMDQPFYATEEIYIIMQSCWAF  306 (325)
T ss_dssp             -----CSHHHHHHHHT--T--------------------------------------CCCCCCTTCCHHHHHHHHHHTCS
T ss_pred             -----HHHHHHHHHhc--C--------------------------------------CCCCCCCcCCHHHHHHHHHHcCC
Confidence                 12222222110  0                                      01124455677999999999999


Q ss_pred             CCCCCCChHHHhcC
Q 013220          399 TPEKRPTAQQCLQH  412 (447)
Q Consensus       399 dP~kRpta~elL~h  412 (447)
                      ||++|||++|+++|
T Consensus       307 dP~~RPt~~ei~~~  320 (325)
T d1rjba_         307 DSRKRPSFPNLTSF  320 (325)
T ss_dssp             SGGGSCCHHHHHHH
T ss_pred             ChhHCcCHHHHHHH
Confidence            99999999999976

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-47  Score=365.33  Aligned_cols=249  Identities=27%  Similarity=0.426  Sum_probs=195.2

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechh---HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA---AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      .++|++.++||+|+||+||+|+..   ..||||+++..   ....+.+.+|+++++.+      +|||||+++++...  
T Consensus         7 ~~~~~~~~~lG~G~fg~Vy~~~~~---~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l------~HpnIv~~~~~~~~--   75 (276)
T d1uwha_           7 DGQITVGQRIGSGSFGTVYKGKWH---GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKT------RHVNILLFMGYSTA--   75 (276)
T ss_dssp             TTCCCCCSEEEECSSCEEEEEESS---SEEEEEECCCSSCCTTHHHHHHHHHHHHTTC------CCTTBCCEEEEECS--
T ss_pred             cccEEEEEEEeeCCCcEEEEEEEC---CEEEEEEEEcccCCHHHHHHHHHHHHHHHhC------CCCCEeeeeEEEec--
Confidence            478999999999999999999753   35999987643   34456788999999999      89999999997643  


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                         ..+++||||| +++|.+++.... ..+++..+..++.||+.||+|||++ |||||||||+|||+             
T Consensus        76 ---~~~~lv~Ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~gl~yLH~~-~ivHrDlKp~NiLl-------------  137 (276)
T d1uwha_          76 ---PQLAIVTQWCEGSSLYHHLHIIE-TKFEMIKLIDIARQTAQGMDYLHAK-SIIHRDLKSNNIFL-------------  137 (276)
T ss_dssp             ---SSCEEEEECCCEEEHHHHHHTSC-CCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEE-------------
T ss_pred             ---cEEEEEEecCCCCCHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHhcC-CEeccccCHHHEEE-------------
Confidence               4689999999 889999886433 4589999999999999999999997 99999999999999             


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc--
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--  268 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~--  268 (447)
                                                                                 +.++.+||+|||+|.....  
T Consensus       138 -----------------------------------------------------------~~~~~~Kl~DFGla~~~~~~~  158 (276)
T d1uwha_         138 -----------------------------------------------------------HEDLTVKIGDFGLATVKSRWS  158 (276)
T ss_dssp             -----------------------------------------------------------ETTSSEEECCCCCSCC-----
T ss_pred             -----------------------------------------------------------cCCCCEEEccccceeeccccC
Confidence                                                                       3467899999999965432  


Q ss_pred             ---ccccCCCCCCccChHHhhc---CCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh
Q 013220          269 ---QFAEEIQTRQYRAPEVILR---AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  342 (447)
Q Consensus       269 ---~~~~~~gt~~y~aPE~l~~---~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (447)
                         ......||+.|+|||++.+   .+|+.++|||||||++|+|++|+.||.+.+      ....+...... +..+..+
T Consensus       159 ~~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~------~~~~~~~~~~~-~~~~p~~  231 (276)
T d1uwha_         159 GSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNIN------NRDQIIFMVGR-GYLSPDL  231 (276)
T ss_dssp             -------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCC------CHHHHHHHHHH-TSCCCCG
T ss_pred             CcccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCC------hHHHHHHHHhc-CCCCCcc
Confidence               2234578999999999974   358999999999999999999999997652      22222222221 1111000


Q ss_pred             hhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCc
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP  413 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp  413 (447)
                                                         ...+..+++++.+||.+||+.||++|||++|++++-
T Consensus       232 -----------------------------------~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~il~~L  267 (276)
T d1uwha_         232 -----------------------------------SKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASI  267 (276)
T ss_dssp             -----------------------------------GGSCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             -----------------------------------hhccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHH
Confidence                                               013345577899999999999999999999999873

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-46  Score=363.60  Aligned_cols=252  Identities=25%  Similarity=0.385  Sum_probs=203.1

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      ++|++.++||+|+||+||+|++..+ ..||||+++......+.+.+|+.+++.+      +|+|||++++++..     +
T Consensus        17 ~~~~i~~~iG~G~fg~Vy~~~~~~~-~~vAiK~l~~~~~~~~~~~~E~~~l~~l------~h~nIv~~~g~~~~-----~   84 (285)
T d1fmka3          17 ESLRLEVKLGQGCFGEVWMGTWNGT-TRVAIKTLKPGTMSPEAFLQEAQVMKKL------RHEKLVQLYAVVSE-----E   84 (285)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTT-EEEEEEECCTTSSCHHHHHHHHHHHHHC------CCTTBCCEEEEECS-----S
T ss_pred             HHEEEeeEEeeCCCeEEEEEEECCC-CEEEEEEECcccCCHHHHHHHHHHHHhc------ccCCEeEEEEEEec-----C
Confidence            7899999999999999999998765 5699999987766677899999999999      89999999998753     3


Q ss_pred             eEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          116 HLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       116 ~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      .+++||||| +|++..++.......+++..+..++.||+.||+|||++ ||+||||||+|||+                 
T Consensus        85 ~~~lv~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~-~ivH~DlKp~NIll-----------------  146 (285)
T d1fmka3          85 PIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM-NYVHRDLRAANILV-----------------  146 (285)
T ss_dssp             SCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEE-----------------
T ss_pred             CeEEEEEecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhh-heecccccceEEEE-----------------
Confidence            578999999 88888887665555699999999999999999999996 99999999999999                 


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc----c
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----F  270 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~----~  270 (447)
                                                                             +.++.+||+|||++......    .
T Consensus       147 -------------------------------------------------------~~~~~~kl~DfGla~~~~~~~~~~~  171 (285)
T d1fmka3         147 -------------------------------------------------------GENLVCKVADFGLARLIEDNEYTAR  171 (285)
T ss_dssp             -------------------------------------------------------CGGGCEEECCCCTTC----------
T ss_pred             -------------------------------------------------------CCCCcEEEcccchhhhccCCCceee
Confidence                                                                   44678999999999754322    2


Q ss_pred             ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCcc
Q 013220          271 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  350 (447)
Q Consensus       271 ~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  350 (447)
                      ....||+.|+|||.+....++.++|||||||++|+|++|..||....     .....+..+.+  +              
T Consensus       172 ~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~-----~~~~~~~~i~~--~--------------  230 (285)
T d1fmka3         172 QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGM-----VNREVLDQVER--G--------------  230 (285)
T ss_dssp             ----CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC-----CHHHHHHHHHT--T--------------
T ss_pred             ccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCC-----CHHHHHHHHHh--c--------------
Confidence            23468999999999999999999999999999999999766664432     12222222111  0              


Q ss_pred             chhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc--Ccccccc
Q 013220          351 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ--HPWLSLR  418 (447)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~--hp~f~~~  418 (447)
                                               .+.+.+..+++++.+||.+||+.||++|||++++++  ++||+..
T Consensus       231 -------------------------~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~~~~~~  275 (285)
T d1fmka3         231 -------------------------YRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTST  275 (285)
T ss_dssp             -------------------------CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCS
T ss_pred             -------------------------CCCCCCcccCHHHHHHHHHHcccCHhHCcCHHHHHHHHhhhhcCC
Confidence                                     012345566789999999999999999999999998  8899753

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.5e-47  Score=363.05  Aligned_cols=248  Identities=22%  Similarity=0.366  Sum_probs=195.4

Q ss_pred             ceEEEE-eecccCceEEEEEEeC--CCCeEEEEEEechhH---HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           37 RYIAQR-KLGWGQFSIVWLAYDT--RTSSYVALKIQKSAA---QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        37 ~y~l~~-~lG~G~~g~Vy~a~~~--~~~~~vaiK~~~~~~---~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      .+.+.+ +||+|+||+||+|.+.  .+++.||||+++...   ...+.+.+|+++++.+      +|||||++++++.. 
T Consensus         7 ~~~le~k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l------~HpnIv~~~g~~~~-   79 (277)
T d1xbba_           7 LLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQL------DNPYIVRMIGICEA-   79 (277)
T ss_dssp             GEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTC------CCTTBCCEEEEEES-
T ss_pred             hCeecCCCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhC------CCCCCceEEEEecc-
Confidence            345554 6999999999999754  456889999886543   3346789999999999      89999999998853 


Q ss_pred             CCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCccc
Q 013220          111 GPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR  189 (447)
Q Consensus       111 ~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~  189 (447)
                          +..++||||| +++|.+++...  ..+++..+..++.||+.||+|||++ ||+||||||+|||++           
T Consensus        80 ----~~~~lvmE~~~~g~L~~~l~~~--~~l~~~~~~~i~~qi~~gl~ylH~~-~iiHrDlKp~Nill~-----------  141 (277)
T d1xbba_          80 ----ESWMLVMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLEES-NFVHRDLAARNVLLV-----------  141 (277)
T ss_dssp             ----SSEEEEEECCTTEEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEE-----------
T ss_pred             ----CCEEEEEEcCCCCcHHHHHhhc--cCCCHHHHHHHHHHHHHHHhhHHhC-CcccCCCcchhhccc-----------
Confidence                3578999999 88999988654  4599999999999999999999997 999999999999994           


Q ss_pred             CCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc
Q 013220          190 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  269 (447)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~  269 (447)
                                                                                   ..+.+||+|||++......
T Consensus       142 -------------------------------------------------------------~~~~~kl~DFGla~~~~~~  160 (277)
T d1xbba_         142 -------------------------------------------------------------TQHYAKISDFGLSKALRAD  160 (277)
T ss_dssp             -------------------------------------------------------------ETTEEEECCCTTCEECCTT
T ss_pred             -------------------------------------------------------------ccCcccccchhhhhhcccc
Confidence                                                                         3678999999999754322


Q ss_pred             ------cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh
Q 013220          270 ------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  342 (447)
Q Consensus       270 ------~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (447)
                            .....||+.|+|||.+.+..++.++|||||||++|+|++ |..||.+.+      .......+.+  |      
T Consensus       161 ~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~------~~~~~~~i~~--~------  226 (277)
T d1xbba_         161 ENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK------GSEVTAMLEK--G------  226 (277)
T ss_dssp             CSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCC------HHHHHHHHHT--T------
T ss_pred             ccccccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCC------HHHHHHHHHc--C------
Confidence                  122368999999999999999999999999999999997 899997652      1111111110  0      


Q ss_pred             hhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHH---hcCccccc
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQC---LQHPWLSL  417 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~el---L~hp~f~~  417 (447)
                                                       .++..+...++++.+||.+||+.||++|||++++   |+|+|+..
T Consensus       227 ---------------------------------~~~~~p~~~~~~~~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~~  271 (277)
T d1xbba_         227 ---------------------------------ERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDV  271 (277)
T ss_dssp             ---------------------------------CCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------CCCCCCcccCHHHHHHHHHHcCCCHhHCcCHHHHHHHhhCHHhhc
Confidence                                             1123455667899999999999999999999998   57777653

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-46  Score=366.15  Aligned_cols=247  Identities=19%  Similarity=0.304  Sum_probs=190.8

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCe---EEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSS---YVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~---~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      .++|++.+.||+|+||+||+|++..+++   .||||.+...  ....+.+.+|+++|+.+      +|||||++++++..
T Consensus        25 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~HpnIv~l~g~~~~   98 (299)
T d1jpaa_          25 ISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQF------DHPNVIHLEGVVTK   98 (299)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTC------CCTTBCCEEEEECS
T ss_pred             hhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhC------CCCCCccEEEEEee
Confidence            3689999999999999999999876654   6889976543  34456789999999999      89999999999875


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                      .    ..+++||||| +++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+|||+           
T Consensus        99 ~----~~~~iv~Ey~~~g~L~~~~~~~~-~~l~~~~~~~i~~qia~gl~yLH~~-~iiHrDlKp~NILl-----------  161 (299)
T d1jpaa_          99 S----TPVMIITEFMENGSLDSFLRQND-GQFTVIQLVGMLRGIAAGMKYLADM-NYVHRDLAARNILV-----------  161 (299)
T ss_dssp             S----SSCEEEEECCTTEEHHHHHHTTT-TCSCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEE-----------
T ss_pred             C----CEEEEEEEecCCCcceeeecccc-CCCCHHHHHHHHHHHHHHHHHHhhC-CCccCccccceEEE-----------
Confidence            3    6799999999 889998776432 4589999999999999999999996 99999999999999           


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                   +.++.+||+|||++.....
T Consensus       162 -------------------------------------------------------------~~~~~~Kl~DFGla~~~~~  180 (299)
T d1jpaa_         162 -------------------------------------------------------------NSNLVCKVSDFGLSRFLED  180 (299)
T ss_dssp             -------------------------------------------------------------CTTCCEEECCC--------
T ss_pred             -------------------------------------------------------------CCCCcEEECCcccceEccC
Confidence                                                                         4467899999999975432


Q ss_pred             c--------cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCC
Q 013220          269 Q--------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMP  339 (447)
Q Consensus       269 ~--------~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~  339 (447)
                      .        .....||+.|+|||.+.+..++.++|||||||++|+|++ |..||.+.+      ....+..+.+  +   
T Consensus       181 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~------~~~~~~~i~~--~---  249 (299)
T d1jpaa_         181 DTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMT------NQDVINAIEQ--D---  249 (299)
T ss_dssp             ---------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC------HHHHHHHHHT--T---
T ss_pred             CCCcceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCC------HHHHHHHHHc--C---
Confidence            2        112356899999999999999999999999999999998 899997652      2222211110  0   


Q ss_pred             HHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          340 RKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                          .+++.+..+++.+.+||.+||+.||++|||++|++++
T Consensus       250 ------------------------------------~~~~~~~~~~~~l~~li~~cl~~~P~~RPs~~ei~~~  286 (299)
T d1jpaa_         250 ------------------------------------YRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNT  286 (299)
T ss_dssp             ------------------------------------CCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHH
T ss_pred             ------------------------------------CCCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence                                                0112344567789999999999999999999999875

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-46  Score=366.14  Aligned_cols=256  Identities=25%  Similarity=0.360  Sum_probs=207.2

Q ss_pred             CceEEEEeecccCceEEEEEEe---CCCCeEEEEEEechh-----HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYD---TRTSSYVALKIQKSA-----AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~---~~~~~~vaiK~~~~~-----~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      ++|++.++||+|+||+||+|++   ..+++.||||+++..     ....+.+.+|+++++.+.     +|+||+++++.+
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~-----h~pnIv~~~~~~   98 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIR-----QSPFLVTLHYAF   98 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHH-----TCTTBCCEEEEE
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhcc-----CCCeEEEeeeee
Confidence            6799999999999999999986   446899999987543     233567889999999996     458999999998


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCC
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKD  186 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~  186 (447)
                      ...    ..++++|||+ +++|.+.+....  .+++..+..++.||+.||+|||++ ||+||||||+||++         
T Consensus        99 ~~~----~~~~~v~e~~~~~~L~~~i~~~~--~~~e~~~~~~~~Qi~~al~~lH~~-~ivHrDiKp~Nill---------  162 (322)
T d1vzoa_          99 QTE----TKLHLILDYINGGELFTHLSQRE--RFTEHEVQIYVGEIVLALEHLHKL-GIIYRDIKLENILL---------  162 (322)
T ss_dssp             EET----TEEEEEECCCCSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEE---------
T ss_pred             ccC----CceeeeeecccccHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHhhcC-CEEeccCCccceee---------
Confidence            864    6899999999 889999887654  478999999999999999999996 99999999999999         


Q ss_pred             cccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccc
Q 013220          187 PIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA  266 (447)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~  266 (447)
                                                                                     +.++.++|+|||++...
T Consensus       163 ---------------------------------------------------------------~~~~~vkL~DFG~a~~~  179 (322)
T d1vzoa_         163 ---------------------------------------------------------------DSNGHVVLTDFGLSKEF  179 (322)
T ss_dssp             ---------------------------------------------------------------CTTSCEEESCSSEEEEC
T ss_pred             ---------------------------------------------------------------cCCCCEEEeeccchhhh
Confidence                                                                           44678999999999754


Q ss_pred             ccc----cccCCCCCCccChHHhhcC--CCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCH
Q 013220          267 NKQ----FAEEIQTRQYRAPEVILRA--GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  340 (447)
Q Consensus       267 ~~~----~~~~~gt~~y~aPE~l~~~--~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~  340 (447)
                      ...    .....|++.|+|||.+.+.  .++.++|||||||++|+|++|..||...+...      ....+.        
T Consensus       180 ~~~~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~------~~~~i~--------  245 (322)
T d1vzoa_         180 VADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKN------SQAEIS--------  245 (322)
T ss_dssp             CGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCC------CHHHHH--------
T ss_pred             cccccccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHH------HHHHHH--------
Confidence            322    2335789999999999764  46789999999999999999999997764221      111111        


Q ss_pred             HhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC-----ChHHHhcCccc
Q 013220          341 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWL  415 (447)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp-----ta~elL~hp~f  415 (447)
                                                    .......+.++...++++.+||.+||++||++||     ||+|+|+||||
T Consensus       246 ------------------------------~~~~~~~~~~~~~~s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~Hpff  295 (322)
T d1vzoa_         246 ------------------------------RRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFF  295 (322)
T ss_dssp             ------------------------------HHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGG
T ss_pred             ------------------------------HhcccCCCCCcccCCHHHHHHHHHHcccCHHHcCCCCcccHHHHHcCHhh
Confidence                                          1111222345566788999999999999999999     58999999999


Q ss_pred             cccc
Q 013220          416 SLRN  419 (447)
Q Consensus       416 ~~~~  419 (447)
                      +..+
T Consensus       296 ~~i~  299 (322)
T d1vzoa_         296 QKIN  299 (322)
T ss_dssp             TTCC
T ss_pred             cCCC
Confidence            8765

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-46  Score=355.63  Aligned_cols=246  Identities=19%  Similarity=0.296  Sum_probs=191.2

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCC---CeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRT---SSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~---~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      .++|++.+.||+|+||.||+|++..+   +..||||.++..  ....+.+.+|+++++.+      +||||+++++++..
T Consensus         6 ~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l------~HpnIv~l~~~~~~   79 (273)
T d1mp8a_           6 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQF------DHPHIVKLIGVITE   79 (273)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTC------CCTTBCCEEEEECS
T ss_pred             HHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhC------CCCCEeeEEEEEec
Confidence            36899999999999999999987654   456889987543  33456789999999999      89999999998853


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                           ..+++||||| ++++..++.... ..+++..++.++.||+.||+|||++ ||+||||||+||++.          
T Consensus        80 -----~~~~iv~E~~~~g~l~~~~~~~~-~~l~~~~~~~~~~qi~~gl~ylH~~-~iiHrDlKp~NIll~----------  142 (273)
T d1mp8a_          80 -----NPVWIIMELCTLGELRSFLQVRK-YSLDLASLILYAYQLSTALAYLESK-RFVHRDIAARNVLVS----------  142 (273)
T ss_dssp             -----SSCEEEEECCTTEEHHHHHHHTT-TTSCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEE----------
T ss_pred             -----CeEEEEEEeccCCcHHhhhhccC-CCCCHHHHHHHHHHHHHHhhhhccc-Ceeccccchhheeec----------
Confidence                 4689999999 888888765433 4689999999999999999999996 999999999999994          


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                    ..+.+||+|||+|.....
T Consensus       143 --------------------------------------------------------------~~~~~Kl~DfG~a~~~~~  160 (273)
T d1mp8a_         143 --------------------------------------------------------------SNDCVKLGDFGLSRYMED  160 (273)
T ss_dssp             --------------------------------------------------------------ETTEEEECC---------
T ss_pred             --------------------------------------------------------------CCCcEEEccchhheeccC
Confidence                                                                          356799999999976543


Q ss_pred             c----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhh
Q 013220          269 Q----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  343 (447)
Q Consensus       269 ~----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  343 (447)
                      .    .....||+.|+|||++.+..++.++|||||||++|+|++ |..||...+      .......+..  +       
T Consensus       161 ~~~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~------~~~~~~~i~~--~-------  225 (273)
T d1mp8a_         161 STYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVK------NNDVIGRIEN--G-------  225 (273)
T ss_dssp             ----------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCC------GGGHHHHHHT--T-------
T ss_pred             CcceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCC------HHHHHHHHHc--C-------
Confidence            2    223467899999999999999999999999999999987 899997653      2222211110  0       


Q ss_pred             hCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          344 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                      ....++..+++.+.+||.+||+.||++|||++|+++|
T Consensus       226 --------------------------------~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ei~~~  262 (273)
T d1mp8a_         226 --------------------------------ERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQ  262 (273)
T ss_dssp             --------------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             --------------------------------CCCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence                                            1123455677899999999999999999999999976

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-46  Score=353.96  Aligned_cols=247  Identities=22%  Similarity=0.286  Sum_probs=194.5

Q ss_pred             cCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCC
Q 013220           34 NGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPN  113 (447)
Q Consensus        34 ~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~  113 (447)
                      .-++|++.++||+|+||.||+|++  ++..||||+++.+.. .+.+.+|+++++.+      +||||+++++++...   
T Consensus         5 ~~~~~~~~~~lG~G~fg~Vy~~~~--~~~~vAvK~i~~~~~-~~~~~~E~~~l~~l------~HpnIv~~~g~~~~~---   72 (262)
T d1byga_           5 NMKELKLLQTIGKGEFGDVMLGDY--RGNKVAVKCIKNDAT-AQAFLAEASVMTQL------RHSNLVQLLGVIVEE---   72 (262)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEE--TTEEEEEEECCCCC---HHHHHTHHHHTTC------CCTTBCCEEEEECCC---
T ss_pred             CHHHeEEeEEEecCCCeEEEEEEE--CCeEEEEEEECcHHH-HHHHHHHHHHHHhC------CCCCEeeEEEEEEec---
Confidence            346899999999999999999987  477899999976543 56789999999998      899999999988642   


Q ss_pred             cceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCC
Q 013220          114 GQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL  192 (447)
Q Consensus       114 ~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~  192 (447)
                      ...+|+||||+ +++|.+++.......+++..++.++.||+.||+|||++ +|+||||||+||++               
T Consensus        73 ~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~-~ivH~dlkp~Nil~---------------  136 (262)
T d1byga_          73 KGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN-NFVHRDLAARNVLV---------------  136 (262)
T ss_dssp             --CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEE---------------
T ss_pred             CCcEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccC-ceeccccchHhhee---------------
Confidence            24689999999 89999998655444589999999999999999999997 99999999999999               


Q ss_pred             CCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccccccc
Q 013220          193 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAE  272 (447)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~~~~  272 (447)
                                                                               +.++.+||+|||++.........
T Consensus       137 ---------------------------------------------------------~~~~~~kl~dfg~s~~~~~~~~~  159 (262)
T d1byga_         137 ---------------------------------------------------------SEDNVAKVSDFGLTKEASSTQDT  159 (262)
T ss_dssp             ---------------------------------------------------------CTTSCEEECCCCC----------
T ss_pred             ---------------------------------------------------------cCCCCEeecccccceecCCCCcc
Confidence                                                                     44678999999999876666666


Q ss_pred             CCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhhCCCCccc
Q 013220          273 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  351 (447)
Q Consensus       273 ~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  351 (447)
                      ..+|..|+|||++.+..++.++|||||||++|+|++ |..||...+      .......+..                  
T Consensus       160 ~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~------~~~~~~~i~~------------------  215 (262)
T d1byga_         160 GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP------LKDVVPRVEK------------------  215 (262)
T ss_dssp             --CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSC------GGGHHHHHTT------------------
T ss_pred             ccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCC------HHHHHHHHHc------------------
Confidence            678999999999999999999999999999999998 688876542      1111111100                  


Q ss_pred             hhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          352 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                             ..++.++...++++.+||.+||+.||++|||+.+++++
T Consensus       216 -----------------------~~~~~~~~~~~~~~~~li~~cl~~dP~~Rps~~~l~~~  253 (262)
T d1byga_         216 -----------------------GYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQ  253 (262)
T ss_dssp             -----------------------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -----------------------CCCCCCCccCCHHHHHHHHHHcccCHhHCcCHHHHHHH
Confidence                                   01223555667899999999999999999999999874

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-45  Score=358.13  Aligned_cols=250  Identities=20%  Similarity=0.316  Sum_probs=196.2

Q ss_pred             cccCCceEEEEeecccCceEEEEEEeCCCCe----EEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecc
Q 013220           32 LFNGGRYIAQRKLGWGQFSIVWLAYDTRTSS----YVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLID  105 (447)
Q Consensus        32 ~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~----~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~  105 (447)
                      ++...+|++.+.||+|+||+||+|++..+++    .||+|.++..  ....+.+.+|+++++.+      +|||||++++
T Consensus         5 ~~k~~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l------~HpnIv~l~g   78 (317)
T d1xkka_           5 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV------DNPHVCRLLG   78 (317)
T ss_dssp             ECCTTTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHC------CCTTBCCEEE
T ss_pred             cCCHHHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhC------CCCCEeeEEE
Confidence            3445679999999999999999999887765    5788876533  23456789999999999      8999999999


Q ss_pred             cccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCC
Q 013220          106 HFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS  184 (447)
Q Consensus       106 ~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~  184 (447)
                      ++...     ..+++|||+ +++|.+.+... ...+++..++.++.||+.||+|||++ ||+||||||+||+++      
T Consensus        79 ~~~~~-----~~~~v~e~~~~~~l~~~~~~~-~~~~~~~~~~~i~~qi~~gl~yLH~~-~iiHrDlKp~NIll~------  145 (317)
T d1xkka_          79 ICLTS-----TVQLITQLMPFGCLLDYVREH-KDNIGSQYLLNWCVQIAKGMNYLEDR-RLVHRDLAARNVLVK------  145 (317)
T ss_dssp             EEESS-----SEEEEEECCTTCBHHHHHHHT-SSSCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEE------
T ss_pred             EEecC-----CeeEEEEeccCCccccccccc-ccCCCHHHHHHHHHHHHHHHHHHHHc-CcccCcchhhcceeC------
Confidence            98753     467778888 88888877654 35699999999999999999999997 999999999999994      


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccc
Q 013220          185 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  264 (447)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~  264 (447)
                                                                                        ..+.+||+|||+|.
T Consensus       146 ------------------------------------------------------------------~~~~~kl~DFGla~  159 (317)
T d1xkka_         146 ------------------------------------------------------------------TPQHVKITDFGLAK  159 (317)
T ss_dssp             ------------------------------------------------------------------ETTEEEECCCSHHH
T ss_pred             ------------------------------------------------------------------CCCCeEeeccccce
Confidence                                                                              36789999999997


Q ss_pred             ccccc-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhCCC
Q 013220          265 RANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKM  338 (447)
Q Consensus       265 ~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~  338 (447)
                      .....     .....||+.|+|||++.+..|+.++|||||||++|+|++ |..||.+.+      .......+.+  |  
T Consensus       160 ~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~------~~~~~~~i~~--~--  229 (317)
T d1xkka_         160 LLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP------ASEISSILEK--G--  229 (317)
T ss_dssp             HTTTTCC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSC------GGGHHHHHHH--T--
T ss_pred             ecccccccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCC------HHHHHHHHHc--C--
Confidence            54322     122357999999999999999999999999999999998 788886542      1111111111  0  


Q ss_pred             CHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcCc
Q 013220          339 PRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP  413 (447)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~hp  413 (447)
                                                           .++..+...++.+.+||.+||+.||++|||+.|+++|.
T Consensus       230 -------------------------------------~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~eil~~l  267 (317)
T d1xkka_         230 -------------------------------------ERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEF  267 (317)
T ss_dssp             -------------------------------------CCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             -------------------------------------CCCCCCcccCHHHHHHHHHhCCCChhhCcCHHHHHHHH
Confidence                                                 11224455677899999999999999999999999884

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-45  Score=353.62  Aligned_cols=251  Identities=24%  Similarity=0.343  Sum_probs=191.2

Q ss_pred             CCceEEEEeecccCceEEEEEEeCC-----CCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTR-----TSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~-----~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      .++|++.++||+|+||.||+|++..     +++.||||+++...  ...+.+..|.+++..+.     +|++|+.+++++
T Consensus        12 ~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~-----~h~~iv~~~~~~   86 (299)
T d1ywna1          12 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIG-----HHLNVVNLLGAC   86 (299)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHC-----CCTTBCCEEEEE
T ss_pred             HHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhc-----CCCeEEEeeeee
Confidence            4689999999999999999998643     45789999886432  33456778888888875     788999999887


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhcc--------------CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCC
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSRY--------------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKP  172 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~--------------~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp  172 (447)
                      ...   +..+++||||| +++|.+++.....              ..+++..+..++.||+.||+|||++ ||+||||||
T Consensus        87 ~~~---~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~-~ivHrDlKp  162 (299)
T d1ywna1          87 TKP---GGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR-KCIHRDLAA  162 (299)
T ss_dssp             CST---TSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCG
T ss_pred             ccC---CCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhC-CCcCCcCCc
Confidence            653   45789999999 8999998865321              2478899999999999999999996 999999999


Q ss_pred             CCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcc
Q 013220          173 ENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGID  252 (447)
Q Consensus       173 ~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (447)
                      +|||+                                                                        +..
T Consensus       163 ~NILl------------------------------------------------------------------------~~~  170 (299)
T d1ywna1         163 RNILL------------------------------------------------------------------------SEK  170 (299)
T ss_dssp             GGEEE------------------------------------------------------------------------CGG
T ss_pred             cceeE------------------------------------------------------------------------CCC
Confidence            99999                                                                        446


Q ss_pred             cceeEeecCcccccccc-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhC-CCCCCCCCCCCCCCchH
Q 013220          253 MRCKVVDFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATG-DMLFAPKSGQGFCEDED  326 (447)
Q Consensus       253 ~~~kL~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g-~~Pf~~~~~~~~~~~~~  326 (447)
                      +.+||+|||+|+.....     ....+||+.|+|||++.+..++.++|||||||++|+|++| ..||...+      ...
T Consensus       171 ~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~------~~~  244 (299)
T d1ywna1         171 NVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK------IDE  244 (299)
T ss_dssp             GCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC------CSH
T ss_pred             CcEEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCC------HHH
Confidence            78999999999754322     2234789999999999999999999999999999999986 46776542      111


Q ss_pred             HHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCCh
Q 013220          327 HLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA  406 (447)
Q Consensus       327 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta  406 (447)
                      .+...... |                                       ..+..+...++++.+||.+||+.||++|||+
T Consensus       245 ~~~~~~~~-~---------------------------------------~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~  284 (299)
T d1ywna1         245 EFCRRLKE-G---------------------------------------TRMRAPDYTTPEMYQTMLDCWHGEPSQRPTF  284 (299)
T ss_dssp             HHHHHHHH-T---------------------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             HHHHHHhc-C---------------------------------------CCCCCCccCCHHHHHHHHHHcCCChhHCcCH
Confidence            11111110 0                                       1122445567789999999999999999999


Q ss_pred             HHHhcC
Q 013220          407 QQCLQH  412 (447)
Q Consensus       407 ~elL~h  412 (447)
                      +|+++|
T Consensus       285 ~eil~~  290 (299)
T d1ywna1         285 SELVEH  290 (299)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999987

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-44  Score=347.65  Aligned_cols=246  Identities=19%  Similarity=0.289  Sum_probs=190.5

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCC----eEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTS----SYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~----~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      +.|++.+.||+|+||+||+|.+..++    ..||||.+...  ......+.+|+++++.+      +|+|||++++++..
T Consensus         7 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l------~H~nIv~~~g~~~~   80 (283)
T d1mqba_           7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQF------SHHNIIRLEGVISK   80 (283)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTC------CCTTBCCEEEEECS
T ss_pred             HHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhc------CCCCEeeeeEEEec
Confidence            67999999999999999999876543    57999987543  23345688999999999      89999999999875


Q ss_pred             cCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcc
Q 013220          110 AGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI  188 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~  188 (447)
                      .    ..+++||||| ++++...+... ...+++..+..++.|++.||+|||++ +|+||||||+|||+           
T Consensus        81 ~----~~~~~v~e~~~~~~l~~~~~~~-~~~~~~~~~~~i~~~i~~gl~~lH~~-~iiHrDlKp~NILl-----------  143 (283)
T d1mqba_          81 Y----KPMMIITEYMENGALDKFLREK-DGEFSVLQLVGMLRGIAAGMKYLANM-NYVHRDLAARNILV-----------  143 (283)
T ss_dssp             S----SSEEEEEECCTTEEHHHHHHHT-TTCSCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEE-----------
T ss_pred             C----CceEEEEEecccCcchhhhhcc-cccccHHHHHHHHHHHHHhhhhcccc-ccccCccccceEEE-----------
Confidence            3    6799999999 77787766543 35689999999999999999999996 99999999999999           


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCccccccc
Q 013220          189 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  268 (447)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~  268 (447)
                                                                                   +.++.+||+|||+++....
T Consensus       144 -------------------------------------------------------------~~~~~~Kl~DFGla~~~~~  162 (283)
T d1mqba_         144 -------------------------------------------------------------NSNLVCKVSDFGLSRVLED  162 (283)
T ss_dssp             -------------------------------------------------------------CTTCCEEECCCCC------
T ss_pred             -------------------------------------------------------------CCCCeEEEcccchhhcccC
Confidence                                                                         4467899999999975432


Q ss_pred             c------cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHh
Q 013220          269 Q------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  342 (447)
Q Consensus       269 ~------~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  342 (447)
                      .      .....||+.|+|||++.+..++.++|||||||++|+|+++..||....     .....+..+..  |      
T Consensus       163 ~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~-----~~~~~~~~i~~--~------  229 (283)
T d1mqba_         163 DPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWEL-----SNHEVMKAIND--G------  229 (283)
T ss_dssp             -----------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC-----CHHHHHHHHHT--T------
T ss_pred             CCccceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccC-----CHHHHHHHHhc--c------
Confidence            2      122357899999999999999999999999999999999766654331     11111111110  0      


Q ss_pred             hhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          343 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                       .++..+...+..+.+||.+||+.||++|||++|+++
T Consensus       230 ---------------------------------~~~~~~~~~~~~l~~li~~cl~~~p~~RPt~~eil~  265 (283)
T d1mqba_         230 ---------------------------------FRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVS  265 (283)
T ss_dssp             ---------------------------------CCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             ---------------------------------CCCCCchhhHHHHHHHHHHHCcCCHhHCcCHHHHHH
Confidence                                             112244556778999999999999999999999986

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1e-44  Score=352.33  Aligned_cols=262  Identities=20%  Similarity=0.261  Sum_probs=198.7

Q ss_pred             CCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      |++|++.++||+|+||+||+|++..+++.||||++..... ...+..|+++++.+.     +|++|+.+..++.    .+
T Consensus         6 g~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~-~~~~~~E~~i~~~l~-----~~~~i~~~~~~~~----~~   75 (299)
T d1ckia_           6 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK-HPQLHIESKIYKMMQ-----GGVGIPTIRWCGA----EG   75 (299)
T ss_dssp             TTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTT-SCCHHHHHHHHHHST-----TSTTCCCEEEEEE----ET
T ss_pred             CCEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhcc-CHHHHHHHHHHHHcc-----CCCcccEEEEEEe----cC
Confidence            4789999999999999999999999999999998776543 346788999999995     3344555554444    34


Q ss_pred             ceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCCCCC
Q 013220          115 QHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP  194 (447)
Q Consensus       115 ~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~~~~  194 (447)
                      ...++||||+++++...+... ...+++..+..++.|++.||+|||++ ||+||||||+|||+...              
T Consensus        76 ~~~~ivme~~~~~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~-~iiHrDiKp~NIl~~~~--------------  139 (299)
T d1ckia_          76 DYNVMVMELLGPSLEDLFNFC-SRKFSLKTVLLLADQMISRIEYIHSK-NFIHRDVKPDNFLMGLG--------------  139 (299)
T ss_dssp             TEEEEEEECCCCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEECCG--------------
T ss_pred             CEEEEEEEEcCCchhhhhhhc-cCCCcHHHHHHHHHHHHHHHHHHHHC-CeeeccCCHhhcccccc--------------
Confidence            689999999988887766543 35699999999999999999999997 99999999999998442              


Q ss_pred             CcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-----
Q 013220          195 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-----  269 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-----  269 (447)
                                                                             +....++|+|||+|......     
T Consensus       140 -------------------------------------------------------~~~~~vkl~DFG~a~~~~~~~~~~~  164 (299)
T d1ckia_         140 -------------------------------------------------------KKGNLVYIIDFGLAKKYRDARTHQH  164 (299)
T ss_dssp             -------------------------------------------------------GGTTCEEECCCSSCEECBCTTTCCB
T ss_pred             -------------------------------------------------------CCCceeeeeccCcceeccccccccc
Confidence                                                                   23457999999999765322     


Q ss_pred             -----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhh
Q 013220          270 -----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  344 (447)
Q Consensus       270 -----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (447)
                           ....+||+.|+|||.+.+..++.++|||||||++|+|++|..||.........   ..........-..+     
T Consensus       165 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~---~~~~~~~~~~~~~~-----  236 (299)
T d1ckia_         165 IPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKR---QKYERISEKKMSTP-----  236 (299)
T ss_dssp             CCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC----------HHHHHHHHHHSC-----
T ss_pred             eeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHH---HHHHHhhcccCCCC-----
Confidence                 22347999999999999999999999999999999999999999765422110   00000000000000     


Q ss_pred             CCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChH---HHhcCccccc
Q 013220          345 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQ---QCLQHPWLSL  417 (447)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~---elL~hp~f~~  417 (447)
                                                      ........++++.+||.+||+.||++||+++   ++|+|+|.+.
T Consensus       237 --------------------------------~~~~~~~~p~~~~~li~~cl~~~p~~RP~~~~i~~~l~~~~~~~  280 (299)
T d1ckia_         237 --------------------------------IEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQ  280 (299)
T ss_dssp             --------------------------------HHHHTTTSCHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHHH
T ss_pred             --------------------------------hhHhccCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHHHc
Confidence                                            0001234567899999999999999999986   5578887654

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-45  Score=349.65  Aligned_cols=249  Identities=22%  Similarity=0.298  Sum_probs=190.0

Q ss_pred             cccCCceEEEEeecccCceEEEEEEeCC-C--CeEEEEEEechh----HHhHHHHHHHHHHHHHhhcCCCCCcceeeeec
Q 013220           32 LFNGGRYIAQRKLGWGQFSIVWLAYDTR-T--SSYVALKIQKSA----AQFAQAALHEIEVLSAVADGDPSNEKCVIRLI  104 (447)
Q Consensus        32 ~~~~~~y~l~~~lG~G~~g~Vy~a~~~~-~--~~~vaiK~~~~~----~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~  104 (447)
                      +++.++|++.++||+|+||+||+|+... +  ...||||+++.+    ....+.+.+|+++++.+      +|+||++++
T Consensus         4 ~i~~~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l------~H~nIv~~~   77 (273)
T d1u46a_           4 LIGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSL------DHRNLIRLY   77 (273)
T ss_dssp             ECCGGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHC------CCTTBCCEE
T ss_pred             EEchHHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhC------CCCCEEEEE
Confidence            4555789999999999999999997543 2  347899987643    23356789999999999      899999999


Q ss_pred             ccccccCCCcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCC
Q 013220          105 DHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP  183 (447)
Q Consensus       105 ~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~  183 (447)
                      +++..     ...++||||| ++++.+.+.... ..+++..+..++.|++.||+|||++ ||+||||||+||++.     
T Consensus        78 g~~~~-----~~~~lv~e~~~~~~l~~~~~~~~-~~l~~~~~~~~~~qi~~gl~ylH~~-~iiHrDikp~NIll~-----  145 (273)
T d1u46a_          78 GVVLT-----PPMKMVTELAPLGSLLDRLRKHQ-GHFLLGTLSRYAVQVAEGMGYLESK-RFIHRDLAARNLLLA-----  145 (273)
T ss_dssp             EEECS-----SSCEEEEECCTTCBHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEEE-----
T ss_pred             EEEee-----cchheeeeeecCcchhhhhhccc-CCCCHHHHHHHHHHHHHHHHHhhhC-CEeeeeecHHHhccc-----
Confidence            99864     3578999999 788887765433 4599999999999999999999997 999999999999994     


Q ss_pred             CCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcc
Q 013220          184 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  263 (447)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a  263 (447)
                                                                                         .+..+||+|||++
T Consensus       146 -------------------------------------------------------------------~~~~vkl~DfGl~  158 (273)
T d1u46a_         146 -------------------------------------------------------------------TRDLVKIGDFGLM  158 (273)
T ss_dssp             -------------------------------------------------------------------ETTEEEECCCTTC
T ss_pred             -------------------------------------------------------------------cccceeeccchhh
Confidence                                                                               3568999999999


Q ss_pred             ccccccc------ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCchHHHHHHHHHhC
Q 013220          264 CRANKQF------AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIG  336 (447)
Q Consensus       264 ~~~~~~~------~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~~~~~~~~~~~~g  336 (447)
                      .......      ....||..|+|||.+.+..++.++|||||||++|+|++ |..||.+.+      ....+..+.+- +
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~------~~~~~~~i~~~-~  231 (273)
T d1u46a_         159 RALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLN------GSQILHKIDKE-G  231 (273)
T ss_dssp             EECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCC------HHHHHHHHHTS-C
T ss_pred             hhcccCCCcceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcC------HHHHHHHHHhC-C
Confidence            7653321      22357889999999999999999999999999999997 899997652      22222222110 0


Q ss_pred             CCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          337 KMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                             ..+..+..++..+.+||.+||+.||++|||++|+++
T Consensus       232 ---------------------------------------~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~ei~~  267 (273)
T d1u46a_         232 ---------------------------------------ERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRD  267 (273)
T ss_dssp             ---------------------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ---------------------------------------CCCCCcccccHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence                                                   011234456778999999999999999999999863

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-43  Score=344.08  Aligned_cols=250  Identities=23%  Similarity=0.356  Sum_probs=195.5

Q ss_pred             ccCCceEEEEeecccCceEEEEEEeCCCC-------eEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeee
Q 013220           33 FNGGRYIAQRKLGWGQFSIVWLAYDTRTS-------SYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRL  103 (447)
Q Consensus        33 ~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~-------~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~  103 (447)
                      +..++|++.++||+|+||.||+|++..++       ..||||+++.+.  .....+.+|...+..+.     +|+|||++
T Consensus        10 i~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~-----~HpnIv~~   84 (299)
T d1fgka_          10 LPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIG-----KHKNIINL   84 (299)
T ss_dssp             CCGGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC-----CCTTBCCE
T ss_pred             ccHHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhc-----CCCeEEec
Confidence            34579999999999999999999865443       579999886543  34567888988888884     79999999


Q ss_pred             cccccccCCCcceEEEEEecc-cccHHHHHHhhc--------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccc
Q 013220          104 IDHFKHAGPNGQHLCMVLEFL-GDSLLRLIKYSR--------------YKGLELNKVREICKYILTGLDYLHRELGIIHT  168 (447)
Q Consensus       104 ~~~~~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~--------------~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~  168 (447)
                      ++++.+.    ..+++||||| +++|.+++....              ...+++..+..++.||+.||+|||++ +||||
T Consensus        85 ~~~~~~~----~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~-~ivHr  159 (299)
T d1fgka_          85 LGACTQD----GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK-KCIHR  159 (299)
T ss_dssp             EEEECSS----SSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHT-TCCCS
T ss_pred             ccccccC----CeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhC-CEEee
Confidence            9999854    6899999999 899999886543              13489999999999999999999997 99999


Q ss_pred             cCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccC
Q 013220          169 DLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCL  248 (447)
Q Consensus       169 Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (447)
                      ||||+|||+                                                                       
T Consensus       160 DiKp~NiLl-----------------------------------------------------------------------  168 (299)
T d1fgka_         160 DLAARNVLV-----------------------------------------------------------------------  168 (299)
T ss_dssp             CCSGGGEEE-----------------------------------------------------------------------
T ss_pred             eecccceee-----------------------------------------------------------------------
Confidence            999999999                                                                       


Q ss_pred             CCcccceeEeecCcccccccc-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCC
Q 013220          249 DGIDMRCKVVDFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFC  322 (447)
Q Consensus       249 ~~~~~~~kL~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~  322 (447)
                       +..+.+||+|||++......     .....+|+.|+|||.+.+..|+.++|||||||++|+|++ |..||...+     
T Consensus       169 -~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~-----  242 (299)
T d1fgka_         169 -TEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP-----  242 (299)
T ss_dssp             -CTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC-----
T ss_pred             -cCCCCeEeccchhhccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCC-----
Confidence             44678999999999755432     223468899999999999999999999999999999997 788886542     


Q ss_pred             CchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCC
Q 013220          323 EDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEK  402 (447)
Q Consensus       323 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~k  402 (447)
                       . ..+...+.. |                                       ..+..+..+++++.+||.+||+.||.+
T Consensus       243 -~-~~~~~~i~~-~---------------------------------------~~~~~p~~~~~~l~~li~~cl~~dP~~  280 (299)
T d1fgka_         243 -V-EELFKLLKE-G---------------------------------------HRMDKPSNCTNELYMMMRDCWHAVPSQ  280 (299)
T ss_dssp             -H-HHHHHHHHT-T---------------------------------------CCCCCCSSCCHHHHHHHHHHTCSSGGG
T ss_pred             -H-HHHHHHHHc-C---------------------------------------CCCCCCccchHHHHHHHHHHccCCHhH
Confidence             1 111111110 1                                       112244556778999999999999999


Q ss_pred             CCChHHHhc
Q 013220          403 RPTAQQCLQ  411 (447)
Q Consensus       403 Rpta~elL~  411 (447)
                      |||+.|+|+
T Consensus       281 Rps~~eil~  289 (299)
T d1fgka_         281 RPTFKQLVE  289 (299)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999986

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=3.1e-43  Score=341.08  Aligned_cols=261  Identities=18%  Similarity=0.231  Sum_probs=200.8

Q ss_pred             ccccCCceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccccc
Q 013220           31 DLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHA  110 (447)
Q Consensus        31 ~~~~~~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~  110 (447)
                      |++ |++|++.++||+|+||+||+|++..+++.||||++..... ...+.+|+++++.+.     ++++|+.++.++.. 
T Consensus         1 ~vi-g~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~-~~~~~~e~~~~~~l~-----~~~~i~~~~~~~~~-   72 (293)
T d1csna_           1 NVV-GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD-APQLRDEYRTYKLLA-----GCTGIPNVYYFGQE-   72 (293)
T ss_dssp             CEE-TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT-SCCHHHHHHHHHHTT-----TCTTCCCEEEEEEE-
T ss_pred             CCC-CCceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccC-cHHHHHHHHHHHHhc-----CCCCCCEEEEEeec-
Confidence            456 4799999999999999999999999999999998765432 456788999999996     45778888877764 


Q ss_pred             CCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccC
Q 013220          111 GPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS  190 (447)
Q Consensus       111 ~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~  190 (447)
                         +...++||||++++|.+++... ...++...+..++.|++.||+|||++ ||+||||||+|||+.....        
T Consensus        73 ---~~~~~~vme~~~~~l~~~~~~~-~~~~~~~~~~~i~~q~~~~l~~lH~~-giiHrDiKp~Nili~~~~~--------  139 (293)
T d1csna_          73 ---GLHNVLVIDLLGPSLEDLLDLC-GRKFSVKTVAMAAKQMLARVQSIHEK-SLVYRDIKPDNFLIGRPNS--------  139 (293)
T ss_dssp             ---TTEEEEEEECCCCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHTT-TEECCCCCGGGEEECCSSS--------
T ss_pred             ---CCccEEEEEecCCCHHHHHHhh-ccchhhHHHHHHHHHHHHHHHHHHHC-CceeccCCccceeecCccc--------
Confidence               4689999999999998887643 34699999999999999999999996 9999999999999954210        


Q ss_pred             CCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc-
Q 013220          191 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-  269 (447)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~-  269 (447)
                                                                                 .....++|+|||+|+..... 
T Consensus       140 -----------------------------------------------------------~~~~~vkl~DFG~a~~~~~~~  160 (293)
T d1csna_         140 -----------------------------------------------------------KNANMIYVVDFGMVKFYRDPV  160 (293)
T ss_dssp             -----------------------------------------------------------TTTTCEEECCCTTCEESBCTT
T ss_pred             -----------------------------------------------------------ccCCceEEcccceeEEcccCc
Confidence                                                                       12456999999999754321 


Q ss_pred             ---------cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCH
Q 013220          270 ---------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  340 (447)
Q Consensus       270 ---------~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~  340 (447)
                               ....+||+.|+|||.+.+..++.++|||||||++|+|++|..||.+....   ........+....-..+ 
T Consensus       161 ~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~---~~~~~~~~i~~~~~~~~-  236 (293)
T d1csna_         161 TKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAA---TNKQKYERIGEKKQSTP-  236 (293)
T ss_dssp             TCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSC---CHHHHHHHHHHHHHHSC-
T ss_pred             cccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccch---hHHHHHHHHHhccCCCC-
Confidence                     22347999999999999999999999999999999999999999765321   11111111111000000 


Q ss_pred             HhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc
Q 013220          341 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  411 (447)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~  411 (447)
                                                   ...       ....+++++.+++..|+..+|++||+.+.+.+
T Consensus       237 -----------------------------~~~-------l~~~~p~~l~~ii~~~~~~~~~~rP~y~~l~~  271 (293)
T d1csna_         237 -----------------------------LRE-------LCAGFPEEFYKYMHYARNLAFDATPDYDYLQG  271 (293)
T ss_dssp             -----------------------------HHH-------HTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHH
T ss_pred             -----------------------------hHH-------hcCCCCHHHHHHHHHHhcCCcccCcCHHHHHH
Confidence                                         000       12234568999999999999999998776643

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-44  Score=347.38  Aligned_cols=248  Identities=21%  Similarity=0.275  Sum_probs=196.0

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeE--EEEEEech--hHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccC
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSY--VALKIQKS--AAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAG  111 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~--vaiK~~~~--~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~  111 (447)
                      ++|++.++||+|+||+||+|++..++..  ||||.++.  .....+.+.+|+++|+.+.     +|+||+++++++... 
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~-----~HpnIv~~~~~~~~~-   83 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLG-----HHPNIINLLGACEHR-   83 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCC-----CCTTBCCEEEEEEET-
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhcc-----CCCCEeeEEEEEecC-
Confidence            6899999999999999999998887764  66776543  2334567899999999984     699999999998854 


Q ss_pred             CCcceEEEEEecc-cccHHHHHHhh--------------ccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeE
Q 013220          112 PNGQHLCMVLEFL-GDSLLRLIKYS--------------RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL  176 (447)
Q Consensus       112 ~~~~~~~lvmE~~-~~~L~~~~~~~--------------~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nil  176 (447)
                         ..+++||||| +++|.+++...              ....+++..+..++.||+.||.|+|++ +|+||||||+|||
T Consensus        84 ---~~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~-~iiHrDlkp~NIL  159 (309)
T d1fvra_          84 ---GYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK-QFIHRDLAARNIL  159 (309)
T ss_dssp             ---TEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEE
T ss_pred             ---CeeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcC-CccccccccceEE
Confidence               6899999999 89999988543              224589999999999999999999997 9999999999999


Q ss_pred             eeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCccccee
Q 013220          177 LVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCK  256 (447)
Q Consensus       177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  256 (447)
                      +                                                                        +....+|
T Consensus       160 ~------------------------------------------------------------------------~~~~~~k  167 (309)
T d1fvra_         160 V------------------------------------------------------------------------GENYVAK  167 (309)
T ss_dssp             E------------------------------------------------------------------------CGGGCEE
T ss_pred             E------------------------------------------------------------------------cCCCceE
Confidence            9                                                                        4467899


Q ss_pred             EeecCccccccccc--ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCC-CCCCCCCCCCCCCchHHHHHHHH
Q 013220          257 VVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGD-MLFAPKSGQGFCEDEDHLALMME  333 (447)
Q Consensus       257 L~Dfg~a~~~~~~~--~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~-~Pf~~~~~~~~~~~~~~~~~~~~  333 (447)
                      |+|||++.......  ....||..|+|||.+.+..++.++|||||||++|+|++|. .||.+.+      ....+..+.+
T Consensus       168 l~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~------~~~~~~~i~~  241 (309)
T d1fvra_         168 IADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT------CAELYEKLPQ  241 (309)
T ss_dssp             ECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC------HHHHHHHGGG
T ss_pred             EccccccccccccccccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCCC------HHHHHHHHHh
Confidence            99999997554332  2346899999999999999999999999999999999975 5665432      1111111100


Q ss_pred             HhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          334 LIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       334 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                               ..++..+..+++++.+||.+||+.||++|||++|+++|
T Consensus       242 -----------------------------------------~~~~~~~~~~~~~~~~li~~cl~~dP~~RPs~~eil~~  279 (309)
T d1fvra_         242 -----------------------------------------GYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVS  279 (309)
T ss_dssp             -----------------------------------------TCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -----------------------------------------cCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence                                                     01223455667899999999999999999999999987

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.8e-43  Score=342.67  Aligned_cols=246  Identities=19%  Similarity=0.324  Sum_probs=196.3

Q ss_pred             CceEEEEeecccCceEEEEEEeC-----CCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeeccccc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDT-----RTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFK  108 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~-----~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~  108 (447)
                      ++|++.++||+|+||+||+|++.     .+++.||||+++.+.  ...+.+.+|+++++.+      .|+||+++++++.
T Consensus        13 ~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l------~h~niv~~~~~~~   86 (301)
T d1lufa_          13 NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEF------DNPNIVKLLGVCA   86 (301)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTC------CCTTBCCEEEEEC
T ss_pred             HHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhc------CCCCcccceeeec
Confidence            67999999999999999999864     356889999886542  3456789999999999      8999999999987


Q ss_pred             ccCCCcceEEEEEecc-cccHHHHHHhhc----------------------cCCCCHHHHHHHHHHHHHHHHHHHhhCCc
Q 013220          109 HAGPNGQHLCMVLEFL-GDSLLRLIKYSR----------------------YKGLELNKVREICKYILTGLDYLHRELGI  165 (447)
Q Consensus       109 ~~~~~~~~~~lvmE~~-~~~L~~~~~~~~----------------------~~~l~~~~~~~i~~qil~aL~~lH~~~gI  165 (447)
                      ..    ...+++|||+ +++|.+++....                      ...++...+..++.|++.||+|||++ +|
T Consensus        87 ~~----~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~-~i  161 (301)
T d1lufa_          87 VG----KPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER-KF  161 (301)
T ss_dssp             SS----SSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             cC----CceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccC-Ce
Confidence            53    6899999999 889998885422                      12378889999999999999999996 99


Q ss_pred             ccccCCCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCC
Q 013220          166 IHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPE  245 (447)
Q Consensus       166 iH~Dikp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (447)
                      |||||||+|||+                                                                    
T Consensus       162 vHrDlKp~NILl--------------------------------------------------------------------  173 (301)
T d1lufa_         162 VHRDLATRNCLV--------------------------------------------------------------------  173 (301)
T ss_dssp             CCSCCSGGGEEE--------------------------------------------------------------------
T ss_pred             EeeEEcccceEE--------------------------------------------------------------------
Confidence            999999999999                                                                    


Q ss_pred             ccCCCcccceeEeecCcccccccc-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCC-CCCCCCCCC
Q 013220          246 RCLDGIDMRCKVVDFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGD-MLFAPKSGQ  319 (447)
Q Consensus       246 ~~~~~~~~~~kL~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~-~Pf~~~~~~  319 (447)
                          +.++.+||+|||+|......     .....+++.|+|||.+.+..|+.++|||||||++|+|++|. .||...+  
T Consensus       174 ----d~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~--  247 (301)
T d1lufa_         174 ----GENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMA--  247 (301)
T ss_dssp             ----CGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC--
T ss_pred             ----CCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCCCC--
Confidence                44678999999999644321     22346789999999999999999999999999999999986 5665442  


Q ss_pred             CCCCchHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccC
Q 013220          320 GFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFT  399 (447)
Q Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~d  399 (447)
                          ....+..+.+  +.                                       .+..+..++.++.+||.+||+.|
T Consensus       248 ----~~e~~~~v~~--~~---------------------------------------~~~~p~~~~~~~~~li~~cl~~~  282 (301)
T d1lufa_         248 ----HEEVIYYVRD--GN---------------------------------------ILACPENCPLELYNLMRLCWSKL  282 (301)
T ss_dssp             ----HHHHHHHHHT--TC---------------------------------------CCCCCTTCCHHHHHHHHHHTCSS
T ss_pred             ----HHHHHHHHHc--CC---------------------------------------CCCCCccchHHHHHHHHHHcCCC
Confidence                2222221110  11                                       11244556778999999999999


Q ss_pred             CCCCCChHHHhc
Q 013220          400 PEKRPTAQQCLQ  411 (447)
Q Consensus       400 P~kRpta~elL~  411 (447)
                      |++|||+.|+++
T Consensus       283 P~~RPt~~ev~~  294 (301)
T d1lufa_         283 PADRPSFCSIHR  294 (301)
T ss_dssp             GGGSCCHHHHHH
T ss_pred             hhHCcCHHHHHH
Confidence            999999999964

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-42  Score=338.93  Aligned_cols=249  Identities=25%  Similarity=0.364  Sum_probs=198.4

Q ss_pred             CCceEEEEeecccCceEEEEEEe-----CCCCeEEEEEEechh--HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYD-----TRTSSYVALKIQKSA--AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~-----~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      -++|++.++||+|+||.||+|++     ..+++.||||+++..  ......+.+|+++++.+.     +|+|||++++++
T Consensus        22 ~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~-----~HpnIv~~~g~~   96 (311)
T d1t46a_          22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLG-----NHMNIVNLLGAC   96 (311)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHC-----CCTTBCCEEEEE
T ss_pred             HHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhcc-----CCCCEEEEEEEE
Confidence            37899999999999999999975     356789999998754  334557889999999984     799999999998


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhcc----------------CCCCHHHHHHHHHHHHHHHHHHHhhCCcccccC
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSRY----------------KGLELNKVREICKYILTGLDYLHRELGIIHTDL  170 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~~----------------~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Di  170 (447)
                      ...    +.+++||||| +++|.+++.....                ..+++..+..++.||+.||+|||++ ||+||||
T Consensus        97 ~~~----~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~-~ivHrDL  171 (311)
T d1t46a_          97 TIG----GPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK-NCIHRDL  171 (311)
T ss_dssp             CSS----SSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCC
T ss_pred             eeC----CEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC-Ceeeccc
Confidence            753    6799999999 8899988864321                2488899999999999999999997 9999999


Q ss_pred             CCCCeEeeecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCC
Q 013220          171 KPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDG  250 (447)
Q Consensus       171 kp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (447)
                      ||+||++                                                                        +
T Consensus       172 Kp~NIl~------------------------------------------------------------------------~  179 (311)
T d1t46a_         172 AARNILL------------------------------------------------------------------------T  179 (311)
T ss_dssp             SGGGEEE------------------------------------------------------------------------E
T ss_pred             ccccccc------------------------------------------------------------------------c
Confidence            9999999                                                                        4


Q ss_pred             cccceeEeecCccccccccc-----ccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhh-CCCCCCCCCCCCCCCc
Q 013220          251 IDMRCKVVDFGNACRANKQF-----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCED  324 (447)
Q Consensus       251 ~~~~~kL~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~-g~~Pf~~~~~~~~~~~  324 (447)
                      ..+.++++|||.++......     ...+||+.|+|||.+.+..++.++|||||||++|+|++ |..||...+      .
T Consensus       180 ~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~------~  253 (311)
T d1t46a_         180 HGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMP------V  253 (311)
T ss_dssp             TTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC------S
T ss_pred             ccCcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCCC------H
Confidence            46789999999997554321     23467999999999999999999999999999999998 555554432      1


Q ss_pred             hHHHHHHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCC
Q 013220          325 EDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP  404 (447)
Q Consensus       325 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRp  404 (447)
                      ...+..+..- +.                                       ++..+...++.+.+||.+||+.||++||
T Consensus       254 ~~~~~~~i~~-~~---------------------------------------~~~~~~~~~~~l~~Li~~cl~~dP~~RP  293 (311)
T d1t46a_         254 DSKFYKMIKE-GF---------------------------------------RMLSPEHAPAEMYDIMKTCWDADPLKRP  293 (311)
T ss_dssp             SHHHHHHHHH-TC---------------------------------------CCCCCTTSCHHHHHHHHHHTCSSGGGSC
T ss_pred             HHHHHHHHhc-CC---------------------------------------CCCCcccccHHHHHHHHHHcCCChhHCc
Confidence            2222222211 00                                       1123344567899999999999999999


Q ss_pred             ChHHHhc
Q 013220          405 TAQQCLQ  411 (447)
Q Consensus       405 ta~elL~  411 (447)
                      |++|+|+
T Consensus       294 s~~~il~  300 (311)
T d1t46a_         294 TFKQIVQ  300 (311)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            9999986

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-43  Score=341.53  Aligned_cols=263  Identities=20%  Similarity=0.247  Sum_probs=190.9

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQ  115 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~  115 (447)
                      .+|.+.++||+|+||+||+|++  ++..||||+++.+..  +.+..|.+++....    .+|+||+++++++........
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~--~g~~vAvK~~~~~~~--~~~~~e~ei~~~~~----~~HpnIv~~~~~~~~~~~~~~   74 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSREE--RSWFREAEIYQTVM----LRHENILGFIAADNKDNGTWT   74 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE--TTEEEEEEEECGGGH--HHHHHHHHHHTSTT----CCCTTBCCEEEEEEEECSSSE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE--CCEEEEEEEECccch--hHHHHHHHHHHHhh----CCCCcCcceEEEEEeCCCcce
Confidence            6899999999999999999986  588999999876644  34445555443321    289999999999988765667


Q ss_pred             eEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhh-------CCcccccCCCCCeEeeecCCCCCCc
Q 013220          116 HLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRE-------LGIIHTDLKPENILLVSTIDPSKDP  187 (447)
Q Consensus       116 ~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~-------~gIiH~Dikp~Nill~~~~~~~~~~  187 (447)
                      .+|+||||| +++|.+++...   .++......++.|++.||+|+|+.       .||+||||||+|||+          
T Consensus        75 ~~~lv~Ey~~~g~L~~~l~~~---~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl----------  141 (303)
T d1vjya_          75 QLWLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILV----------  141 (303)
T ss_dssp             EEEEEEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEE----------
T ss_pred             EEEEEEecccCCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEE----------
Confidence            899999999 88999998643   488999999999999999999961       299999999999999          


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccc
Q 013220          188 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  267 (447)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~  267 (447)
                                                                                    +.++.+||+|||++....
T Consensus       142 --------------------------------------------------------------~~~~~~Kl~DFGl~~~~~  159 (303)
T d1vjya_         142 --------------------------------------------------------------KKNGTCCIADLGLAVRHD  159 (303)
T ss_dssp             --------------------------------------------------------------CTTSCEEECCCTTCEEEE
T ss_pred             --------------------------------------------------------------cCCCCeEEEecCcccccc
Confidence                                                                          446789999999997543


Q ss_pred             c-------ccccCCCCCCccChHHhhcCC------CCccchhHhHHHHHHHHhhCCCCCCCCCCCCCC-----CchHHHH
Q 013220          268 K-------QFAEEIQTRQYRAPEVILRAG------YSFSVDMWSFACTAFELATGDMLFAPKSGQGFC-----EDEDHLA  329 (447)
Q Consensus       268 ~-------~~~~~~gt~~y~aPE~l~~~~------~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~-----~~~~~~~  329 (447)
                      .       .....+||+.|+|||++.+..      ++.++|||||||++|+|++|..||.........     .......
T Consensus       160 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~  239 (303)
T d1vjya_         160 SATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVE  239 (303)
T ss_dssp             TTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHH
T ss_pred             CCCcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccchHH
Confidence            2       123457999999999997642      567899999999999999999887654322110     0000011


Q ss_pred             HHHHHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHH
Q 013220          330 LMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQC  409 (447)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~el  409 (447)
                      .+.+..-...         ..                 ..+..    . ..+.+....+.+|+.+||+.||++|||+.|+
T Consensus       240 ~~~~~~~~~~---------~~-----------------p~~~~----~-~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei  288 (303)
T d1vjya_         240 EMRKVVCEQK---------LR-----------------PNIPN----R-WQSCEALRVMAKIMRECWYANGAARLTALRI  288 (303)
T ss_dssp             HHHHHHTTSC---------CC-----------------CCCCG----G-GGGCHHHHHHHHHHHTTCCSSGGGSCCHHHH
T ss_pred             HHHHHHhccc---------cC-----------------CCCCc----c-cCChHHHHHHHHHHHHHcccCHhHCcCHHHH
Confidence            1111000000         00                 00000    0 0112345678999999999999999999999


Q ss_pred             hcC
Q 013220          410 LQH  412 (447)
Q Consensus       410 L~h  412 (447)
                      +++
T Consensus       289 ~~~  291 (303)
T d1vjya_         289 KKT  291 (303)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-42  Score=338.93  Aligned_cols=246  Identities=18%  Similarity=0.227  Sum_probs=192.4

Q ss_pred             eEEEEeecccCceEEEEEEeCCCC---eEEEEEEech--hHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           38 YIAQRKLGWGQFSIVWLAYDTRTS---SYVALKIQKS--AAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        38 y~l~~~lG~G~~g~Vy~a~~~~~~---~~vaiK~~~~--~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      +.+.++||+|+||+||+|++..++   ..||||.++.  .......+.+|+++++.+      +||||+++++++...  
T Consensus        29 ~~~~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l------~HpnIv~~~g~~~~~--  100 (311)
T d1r0pa_          29 VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDF------SHPNVLSLLGICLRS--  100 (311)
T ss_dssp             EEEEEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTC------CCTTBCCCCEEEEET--
T ss_pred             eccceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhC------CCCCEeEEeEEEEec--
Confidence            345788999999999999876543   4689998763  344567899999999999      899999999987643  


Q ss_pred             CcceEEEEEecc-cccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEeeecCCCCCCcccCC
Q 013220          113 NGQHLCMVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG  191 (447)
Q Consensus       113 ~~~~~~lvmE~~-~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~~~~~~~~~~~~~~  191 (447)
                       ....++||||| +++|.+++... ...++...+..++.|++.||.|||+. +|+||||||+|||+              
T Consensus       101 -~~~~~lv~E~~~~g~l~~~~~~~-~~~~~~~~~~~i~~qia~gL~~lH~~-~iiHrDLK~~NILl--------------  163 (311)
T d1r0pa_         101 -EGSPLVVLPYMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMKFLASK-KFVHRDLAARNCML--------------  163 (311)
T ss_dssp             -TTEEEEEEECCTTCBHHHHHHCT-TCCCBHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEE--------------
T ss_pred             -CCceEEEEEEeecCchhhhhccc-cccchHHHHHHHHHHHHHhhhhhccc-CcccCCccHHhEeE--------------
Confidence             24799999999 88888877543 34577888999999999999999996 99999999999999              


Q ss_pred             CCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEeecCcccccccc--
Q 013220          192 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  269 (447)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~Dfg~a~~~~~~--  269 (447)
                                                                                +....+||+|||++......  
T Consensus       164 ----------------------------------------------------------~~~~~~kL~DFG~~~~~~~~~~  185 (311)
T d1r0pa_         164 ----------------------------------------------------------DEKFTVKVADFGLARDMYDKEF  185 (311)
T ss_dssp             ----------------------------------------------------------CTTCCEEECSSGGGCCTTTTTC
T ss_pred             ----------------------------------------------------------CCCCCEEEecccchhhcccccc
Confidence                                                                      44678999999999754321  


Q ss_pred             -----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHhCCCCHHhhh
Q 013220          270 -----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  344 (447)
Q Consensus       270 -----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (447)
                           .....||+.|+|||.+....++.++|||||||++|+|++|..||.....     ..+....+.  .|        
T Consensus       186 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~-----~~~~~~~i~--~g--------  250 (311)
T d1r0pa_         186 DSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVN-----TFDITVYLL--QG--------  250 (311)
T ss_dssp             CCTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC-----------CHHHHH--TT--------
T ss_pred             ccceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCC-----HHHHHHHHH--cC--------
Confidence                 2224678999999999999999999999999999999998888865421     111111110  01        


Q ss_pred             CCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhcC
Q 013220          345 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  412 (447)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~h  412 (447)
                                                     .++..+..+++.+.+||.+||+.||++|||+.|+++|
T Consensus       251 -------------------------------~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~  287 (311)
T d1r0pa_         251 -------------------------------RRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSR  287 (311)
T ss_dssp             -------------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -------------------------------CCCCCcccCcHHHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence                                           1112344556789999999999999999999999988

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-43  Score=340.49  Aligned_cols=254  Identities=22%  Similarity=0.354  Sum_probs=202.1

Q ss_pred             CCceEEEEeecccCceEEEEEEeC-----CCCeEEEEEEechhH--HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           35 GGRYIAQRKLGWGQFSIVWLAYDT-----RTSSYVALKIQKSAA--QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        35 ~~~y~l~~~lG~G~~g~Vy~a~~~-----~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      -++|++.++||+|+||+||+|.+.     .++..||||+++...  .....+.+|+++++.+      +|+||+++++++
T Consensus        19 ~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l------~h~nIv~~~~~~   92 (308)
T d1p4oa_          19 REKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEF------NCHHVVRLLGVV   92 (308)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGC------CCTTBCCEEEEE
T ss_pred             HHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHc------CCCCEeeeeeEE
Confidence            379999999999999999999764     236789999887532  3344688999999999      889999999998


Q ss_pred             cccCCCcceEEEEEecc-cccHHHHHHhhc--------cCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEee
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSLLRLIKYSR--------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV  178 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L~~~~~~~~--------~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~  178 (447)
                      ...    ...++||||| +++|.+++....        ...++...+..++.|++.||+|||++ +|+||||||+|||+ 
T Consensus        93 ~~~----~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~-~ivHrDlk~~NiLl-  166 (308)
T d1p4oa_          93 SQG----QPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN-KFVHRDLAARNCMV-  166 (308)
T ss_dssp             CSS----SSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT-TCBCSCCSGGGEEE-
T ss_pred             ecC----CceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhC-CeeeceEcCCceee-
Confidence            743    6799999999 889998875432        12368888999999999999999997 99999999999999 


Q ss_pred             ecCCCCCCcccCCCCCCcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCccCCCcccceeEe
Q 013220          179 STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVV  258 (447)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~  258 (447)
                                                                                             +.++.+||+
T Consensus       167 -----------------------------------------------------------------------d~~~~~Kl~  175 (308)
T d1p4oa_         167 -----------------------------------------------------------------------AEDFTVKIG  175 (308)
T ss_dssp             -----------------------------------------------------------------------CTTCCEEEC
T ss_pred             -----------------------------------------------------------------------cCCceEEEe
Confidence                                                                                   456789999


Q ss_pred             ecCcccccccc-----cccCCCCCCccChHHhhcCCCCccchhHhHHHHHHHHhhCC-CCCCCCCCCCCCCchHHHHHHH
Q 013220          259 DFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGD-MLFAPKSGQGFCEDEDHLALMM  332 (447)
Q Consensus       259 Dfg~a~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~DiwSlGvil~~l~~g~-~Pf~~~~~~~~~~~~~~~~~~~  332 (447)
                      |||++......     .....+|+.|+|||.+.+..++.++|||||||++|+|++|. .||.+.+      .......+.
T Consensus       176 DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~------~~~~~~~i~  249 (308)
T d1p4oa_         176 DFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLS------NEQVLRFVM  249 (308)
T ss_dssp             CTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSC------HHHHHHHHH
T ss_pred             ecccceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCCC------HHHHHHHHH
Confidence            99999754322     22336789999999999999999999999999999999985 6775432      222221111


Q ss_pred             HHhCCCCHHhhhCCCCccchhcccchhhhhhhcccCchhHHhhhhcCCChhhHHHHHHHHhhccccCCCCCCChHHHhc-
Q 013220          333 ELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ-  411 (447)
Q Consensus       333 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~kRpta~elL~-  411 (447)
                      +  +                                       ..+..+...++.+.+||.+||+.||++|||++|+++ 
T Consensus       250 ~--~---------------------------------------~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~~il~~  288 (308)
T d1p4oa_         250 E--G---------------------------------------GLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISS  288 (308)
T ss_dssp             T--T---------------------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             h--C---------------------------------------CCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence            0  0                                       112234556778999999999999999999999997 


Q ss_pred             -----Ccccccc
Q 013220          412 -----HPWLSLR  418 (447)
Q Consensus       412 -----hp~f~~~  418 (447)
                           +|+|++.
T Consensus       289 L~~~~~~~~~~~  300 (308)
T d1p4oa_         289 IKEEMEPGFREV  300 (308)
T ss_dssp             HGGGSCTTHHHH
T ss_pred             HHHhcCCCCcCC
Confidence                 7777653

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.85  E-value=4.8e-22  Score=178.89  Aligned_cols=117  Identities=20%  Similarity=0.264  Sum_probs=86.6

Q ss_pred             eEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-------------------HhHHHHHHHHHHHHHhhcCCCCCcc
Q 013220           38 YIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-------------------QFAQAALHEIEVLSAVADGDPSNEK   98 (447)
Q Consensus        38 y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-------------------~~~~~~~~E~~~l~~l~~~~~~~~~   98 (447)
                      +.+.++||+|+||+||+|++. +++.||||+++...                   ........|.+.+..+      .+.
T Consensus         2 ~~vg~~IG~G~~g~Vy~a~~~-~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l------~~~   74 (191)
T d1zara2           2 DAIGKLMGEGKESAVFNCYSE-KFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKL------QGL   74 (191)
T ss_dssp             SEEEEEEEECSSEEEEEEEET-TTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHT------TTS
T ss_pred             chhCCEeeeCcceEEEEEECC-CCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHc------cCC
Confidence            467899999999999999875 68899999865321                   1112344577777777      455


Q ss_pred             eeeeecccccccCCCcceEEEEEecccccHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhhCCcccccCCCCCeEee
Q 013220           99 CVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV  178 (447)
Q Consensus        99 ~Iv~~~~~~~~~~~~~~~~~lvmE~~~~~L~~~~~~~~~~~l~~~~~~~i~~qil~aL~~lH~~~gIiH~Dikp~Nill~  178 (447)
                      +++..++..        ..+++|||+++...        ..++...+..++.|++.+|+|||++ ||+||||||+|||+.
T Consensus        75 ~v~~~~~~~--------~~~lvme~~~~~~~--------~~l~~~~~~~i~~ql~~~l~~lH~~-giiHrDiKP~NILv~  137 (191)
T d1zara2          75 AVPKVYAWE--------GNAVLMELIDAKEL--------YRVRVENPDEVLDMILEEVAKFYHR-GIVHGDLSQYNVLVS  137 (191)
T ss_dssp             SSCCEEEEE--------TTEEEEECCCCEEG--------GGCCCSCHHHHHHHHHHHHHHHHHT-TEECSCCSTTSEEEE
T ss_pred             CcceEEEec--------CCEEEEEeeccccc--------cchhhHHHHHHHHHHHHHHHHHhhC-CEEEccCChhheeee
Confidence            666655432        13699999944321        1245566788999999999999996 999999999999994

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.88  E-value=4.1e-05  Score=69.38  Aligned_cols=85  Identities=11%  Similarity=0.017  Sum_probs=55.6

Q ss_pred             CceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhH-HhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCc
Q 013220           36 GRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAA-QFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNG  114 (447)
Q Consensus        36 ~~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~  114 (447)
                      ..|+..+..+.++.+.||+..  ..+..+.+|...... .....+.+|.+.++.+...     --+.+++.....    +
T Consensus        14 ~~~~~~~~~~G~s~~~v~rv~--~~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~-----vpvP~vl~~~~~----~   82 (263)
T d1j7la_          14 EKYRCVKDTEGMSPAKVYKLV--GENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGK-----LPVPKVLHFERH----D   82 (263)
T ss_dssp             TTSEEEECSCCCSSSEEEEEE--CSSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTT-----SCCCCEEEEEEE----T
T ss_pred             hceEEEEcCCCCCCCcEEEEE--eCCCeEEEEEcCCCcccchhhHHHHHHHHHHHhcc-----CCCCcEEEEEec----C
Confidence            568888776656668999985  356677888765443 3344678899999988632     223444444332    3


Q ss_pred             ceEEEEEecc-cccHHHH
Q 013220          115 QHLCMVLEFL-GDSLLRL  131 (447)
Q Consensus       115 ~~~~lvmE~~-~~~L~~~  131 (447)
                      ...++||+++ |..+...
T Consensus        83 ~~~~lv~~~l~G~~~~~~  100 (263)
T d1j7la_          83 GWSNLLMSEADGVLCSEE  100 (263)
T ss_dssp             TEEEEEEECCSSEEHHHH
T ss_pred             CceEEEEEeccccccccc
Confidence            5789999999 6566443

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=97.20  E-value=0.00053  Score=66.17  Aligned_cols=76  Identities=20%  Similarity=0.200  Sum_probs=46.8

Q ss_pred             EEeecccCceEEEEEEeCCCCeEEEEEEechh--------HHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCC
Q 013220           41 QRKLGWGQFSIVWLAYDTRTSSYVALKIQKSA--------AQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGP  112 (447)
Q Consensus        41 ~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~--------~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~  112 (447)
                      .+.||.|....||+..+..+++.+++|.....        .........|.+.|+.+.....   ..+.+++.+  +   
T Consensus        31 ~~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p---~~vP~v~~~--d---  102 (392)
T d2pula1          31 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVP---HLVPRVFYS--D---  102 (392)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCG---GGSCCEEEE--E---
T ss_pred             EEEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCC---CCcceEEEE--c---
Confidence            56799999999999988777889999964321        1123346679999988864321   223333332  1   


Q ss_pred             CcceEEEEEeccc
Q 013220          113 NGQHLCMVLEFLG  125 (447)
Q Consensus       113 ~~~~~~lvmE~~~  125 (447)
                       ....++|||+++
T Consensus       103 -~~~~~lvmE~L~  114 (392)
T d2pula1         103 -TEMAVTVMEDLS  114 (392)
T ss_dssp             -TTTTEEEECCCT
T ss_pred             -CCCCEEEEeccC
Confidence             134578999993

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.00  E-value=0.0015  Score=58.22  Aligned_cols=86  Identities=16%  Similarity=0.107  Sum_probs=53.2

Q ss_pred             cCccccCCceEEEEeecccCc-eEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccc
Q 013220           29 VGDLFNGGRYIAQRKLGWGQF-SIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHF  107 (447)
Q Consensus        29 ~g~~~~~~~y~l~~~lG~G~~-g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~  107 (447)
                      +++.+.+.++   +.+..|.. +.||+... ..+..+.+|......  ...+..|.+.++.+..... .   +.+++...
T Consensus         6 ~~~~l~g~~~---~~~~~G~s~~~v~r~~~-~~~~~~vlK~~~~~~--~~~l~~E~~~l~~L~~~gv-p---vP~v~~~~   75 (255)
T d1nd4a_           6 WVERLFGYDW---AQQTIGCSDAAVFRLSA-QGRPVLFVKTDLSGA--LNELQDEAARLSWLATTGV-P---CAAVLDVV   75 (255)
T ss_dssp             GTTTTTTCEE---EECSCTTSSCEEEEEEC-TTSCCEEEEEECSCT--TSCHHHHHHHHHHHHTTTC-C---BCCEEEEE
T ss_pred             HHHhccCCce---EEcCCcccCCeEEEEEe-CCCCEEEEEeCCccC--HhHHHHHHHHHHHHHhcCC-C---CCceeeec
Confidence            4555555344   24455554 68999975 356678889765443  3467889999999875421 2   44444443


Q ss_pred             cccCCCcceEEEEEecc-cccH
Q 013220          108 KHAGPNGQHLCMVLEFL-GDSL  128 (447)
Q Consensus       108 ~~~~~~~~~~~lvmE~~-~~~L  128 (447)
                      .+    ....++||+++ |.++
T Consensus        76 ~~----~~~~~~v~~~i~G~~~   93 (255)
T d1nd4a_          76 TE----AGRDWLLLGEVPGQDL   93 (255)
T ss_dssp             EC----SSCEEEEEECCSSEET
T ss_pred             cc----ccceEEEEEeeecccc
Confidence            32    34688999999 5443

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=0.0067  Score=56.44  Aligned_cols=72  Identities=10%  Similarity=0.030  Sum_probs=45.4

Q ss_pred             ceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccccCCCcceEEEEEecc
Q 013220           49 FSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKHAGPNGQHLCMVLEFL  124 (447)
Q Consensus        49 ~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~~~~~~~~~~lvmE~~  124 (447)
                      -..||+++. .+|..|++|+..........+..|.+.+..|..... ..+..+..-+--..  ..+...+.+++++
T Consensus        35 EN~vy~v~~-~dg~~~VlK~~rp~~~s~~~i~~E~~~l~~L~~~gi-pv~~p~~~~g~~~~--~~~~~~~~l~~~~  106 (325)
T d1zyla1          35 ENRVYQFQD-EDRRRFVVKFYRPERWTADQILEEHQFALQLVNDEV-PVAAPVAFNGQTLL--NHQGFYFAVFPSV  106 (325)
T ss_dssp             SSEEEEECC-TTCCCEEEEEECTTTSCHHHHHHHHHHHHHHHHTTC-SBCCCCCBTTBSCE--EETTEEEEEEECC
T ss_pred             cceeEEEEc-CCCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCC-CCCCceecCCCeee--eeeeEEEEEEeec
Confidence            368999975 457889999987665566778899999999875432 11111111111100  1234678889988

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.36  E-value=0.021  Score=54.36  Aligned_cols=73  Identities=11%  Similarity=0.151  Sum_probs=48.1

Q ss_pred             ceEEEEeecccCceEEEEEEeCC-------CCeEEEEEEechhHHhHHHHHHHHHHHHHhhcCCCCCcceeeeecccccc
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTR-------TSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSNEKCVIRLIDHFKH  109 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~-------~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~Iv~~~~~~~~  109 (447)
                      ..++ ++|+.|-...+|++....       ....|.+++.-... ......+|.++++.+.....     ..+++.++..
T Consensus        44 ~l~v-~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g~~~-~~idr~~E~~i~~~ls~~gl-----~Pkll~~~~~  116 (395)
T d1nw1a_          44 HLRI-SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPE-TESHLVAESVIFTLLSERHL-----GPKLYGIFSG  116 (395)
T ss_dssp             GEEE-EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCC-CHHHHHHHHHHHHHHHHTTS-----SSCEEEEETT
T ss_pred             ceEE-EEcCCccccceEEEEeCCCCccccCCCCcEEEEecCCcc-hhhHHHHHHHHHHHHHhCCC-----CCeEEEEcCC
Confidence            3444 578889999999997643       24568888765322 23456689999999874332     3355555431


Q ss_pred             cCCCcceEEEEEecc
Q 013220          110 AGPNGQHLCMVLEFL  124 (447)
Q Consensus       110 ~~~~~~~~~lvmE~~  124 (447)
                              .+||||+
T Consensus       117 --------g~I~efi  123 (395)
T d1nw1a_         117 --------GRLEEYI  123 (395)
T ss_dssp             --------EEEECCC
T ss_pred             --------ceEEEEe
Confidence                    4788998

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.66  E-value=0.13  Score=46.71  Aligned_cols=53  Identities=9%  Similarity=0.046  Sum_probs=33.5

Q ss_pred             ceEEEEeecccCceEEEEEEeCCCCeEEEEEEechhHHhHHHHHHHHHHHHHhhcC
Q 013220           37 RYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADG   92 (447)
Q Consensus        37 ~y~l~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~~~   92 (447)
                      ...-.+.|..|--.+.|+.....  ..|++|+.... .....+..|++++..+...
T Consensus        19 ~~~~~~~i~~G~~N~ny~v~t~~--g~yVLri~~~~-~~~~~l~~~~~~l~~L~~~   71 (316)
T d2ppqa1          19 SLTSYKGIAEGVENSNFLLHTTK--DPLILTLYEKR-VEKNDLPFFLGLMQHLAAK   71 (316)
T ss_dssp             CEEEEEEECC---EEEEEEEESS--CCEEEEEECC----CCHHHHHHHHHHHHHHT
T ss_pred             CceEeecCCCCcccCeEEEEECC--CcEEEEEcCCC-CCHHHHHHHHHHHHhhhhc
Confidence            34445567778889999997643  35899987653 2345667788888888754