Citrus Sinensis ID: 013222

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------
Protein Sequence
MEENNYFDFSFQTQTRPSSNSVSVQEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPNTNTGNVPVPIRPSVTAMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPTGSYMMNQTQQSDGLFNRAKDEPRDDLFLESFLNSNS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccEEEccccccccEEEccccccccEEEEEEcccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccEEEEEEccccEcccccccHEHcccEEEccccccccEEEEccccccccEEEEEccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccHccccccccc
Coil and Loop (DISEMBL)
meennyfdfsfqtqtrpssnsvsvQEESVkrqqepwnfnkptkesdfstenpgvksefapmesfssdmasyqtnvqsnaapqsgnyghynqssaytreqkrsedgynwrkygqkqvkgsenprsyfkctfpdcpmkkkversldGQITEIVYkgshnhpkptstrrssssqsmqhstcansdlsdqsvgplgnthtdsfsmqnesstsfgeddfveqgsptsnpigdddenepdakrwkgendiegvigtgsrtvreprivvqttsdidilddgyrwrKYGQkvvkgnpnprsyykctttgcpvrkhverASHDMRAVITTYegkhnhdvpaargsgytltrplpntntgnvpvpirpsvtamashsnlsnysnslnntrfpsssgsqapyTAAMLQstgsygisgfakptgsymmnqtqqsdglfnrakdeprddlFLESFLNSNS
Flexible Loop (DISEMBL)
meennyfdfsfqtqtrpssnsVSVQEESvkrqqepwnfnkptkesdfstenpgVKSEFAPMESFSSDMASYQTNVQSNAapqsgnyghynqssaYTREQKRSEDGYNWRKYgqkqvkgsenprsyfKCTFPDCPMKKKVERSLDGQITEIvykgshnhpkptstrrssssqsMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSptsnpigdddenepdakrwkgendiegvigtgsrtvreprivvqttsdidilddgyrWRKYgqkvvkgnpnprsyykctttgcpvrkhveraSHDMRAVITtyegkhnhdvpaARGSGYTLTRPLPNTNTGNVPVPIRPSVTAMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPTGSYMMNQTQQSDGLFNRAKDEPRDDLFLesflnsns
Low Complexity Region (SEG)
MEENNYFDFSFQTQTRPssnsvsvqeesvKRQQEPWNFNKPTKESDFSTENPGVKSEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPtstrrssssqsmqhstCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPNTNTGNVPVPIRPSVTAMAshsnlsnysnslnnTRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPTGSYMMNQTQQSDGLFNRAKDEPRDDLFLESFLNSNS
Disordered region (IsUnstruct)
****************************************************************************************************************************YFKCTFPDCPM*********GQITEIVY********************************************************************************************EGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGK**************************************************************************************************************************
Disordered Region (DISOPRED)
******F**************************************************************************************************YNWRKYGQK****SENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDI***************IVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNH***********************************************************************************************************DLFL*SFLN***
Disordered Region (DISEMBL)
MEENNYFDFSF**********************EPWNFNKPT**********GVKSEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYG********NPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSH*************************DLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPNTNTGNVPVPIRPSVTAMASHSNLSNYSNSLNNTR*********PYTAAMLQSTGSYGISGFAKPTGSYMMNQTQQSDGLFNRAKDEPRDDLFLESFLNSNS
Disordered Region (DISPRO)
****************************************************************************************************RSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHN*************************************************************************************************VREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNH*********************************************************************STGSYGISGFAKPT************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEENNYFDFSFQTQTRPSSNSVSVQEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPNTNTGNVPVPIRPSVTAMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPTGSYMMNQTQQSDGLFNRAKDEPRDDLFLESFLNSNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	447	2.2.26 [Sep-21-2011]
Q8S8P5	519	Probable WRKY transcripti	yes	no	0.744	0.641	0.605	1e-106
Q9ZQ70	513	Probable WRKY transcripti	no	no	0.548	0.477	0.554	5e-74
Q9XI90	514	Probable WRKY transcripti	no	no	0.507	0.441	0.544	5e-69
Q9C5T3	309	Probable WRKY transcripti	no	no	0.407	0.588	0.588	6e-69
Q93WV0	557	Probable WRKY transcripti	no	no	0.519	0.416	0.535	3e-67
Q9FG77	687	Probable WRKY transcripti	no	no	0.519	0.337	0.498	2e-66
O22921	393	Probable WRKY transcripti	no	no	0.651	0.740	0.463	2e-65
O65590	568	Probable WRKY transcripti	no	no	0.523	0.411	0.509	4e-62
Q93WU7	423	Probable WRKY transcripti	no	no	0.451	0.477	0.543	3e-58
Q9SI37	487	WRKY transcription factor	no	no	0.586	0.537	0.431	3e-53

>sp|Q8S8P5|WRK33_ARATH Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2

 Score =  386 bits (991), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 224/370 (60%), Positives = 261/370 (70%), Gaps = 37/370 (10%)

Query: 90  NQSSAYT-REQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQIT 148
           NQ+ +Y  REQ++ EDGYNWRKYGQKQVKGSENPRSY+KCTFP+CP KKKVERSL+GQIT
Sbjct: 170 NQAVSYNGREQRKGEDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGQIT 229

Query: 149 EIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSDL-------SDQSVGPLGNTHTDSFSM 201
           EIVYKGSHNHPKP STRRSSSS S  HS   N+ L       SDQ         +DSF M
Sbjct: 230 EIVYKGSHNHPKPQSTRRSSSSSSTFHSAVYNASLDHNRQASSDQPNSNNSFHQSDSFGM 289

Query: 202 QNESST---SFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREP 258
           Q E +T   S G+D+F EQGS   +   +D  +EP+AKRWKG+N+  G  G GS+TVREP
Sbjct: 290 QQEDNTTSDSVGDDEF-EQGSSIVSRDEEDCGSEPEAKRWKGDNETNGGNGGGSKTVREP 348

Query: 259 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAV 318
           RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTT GCPVRKHVERASHDMRAV
Sbjct: 349 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERASHDMRAV 408

Query: 319 ITTYEGKHNHDVPAARGSGYTLTRPLPNTNTGNVPVPIRPSVTAMASHSNLSNYSNSLNN 378
           ITTYEGKHNHDVPAARGSGY   R   ++++    VPIRP+  A+A HSN          
Sbjct: 409 ITTYEGKHNHDVPAARGSGYATNRAPQDSSS----VPIRPA--AIAGHSNY--------- 453

Query: 379 TRFPSSSGSQAPYTAAMLQ----STGSYGISGFAKPTGSYMMNQTQQSDGLFNRAKDEPR 434
                ++ SQAPYT  ML     +TG +G +       S +  Q     G F+RAK+EP 
Sbjct: 454 -----TTSSQAPYTLQMLHNNNTNTGPFGYAMNNNNNNSNLQTQQNFVGGGFSRAKEEPN 508

Query: 435 DDL-FLESFL 443
           ++  F +SF+
Sbjct: 509 EETSFFDSFM 518

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQ70|WRKY3_ARATH Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1

 Score =  278 bits (712), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 142/256 (55%), Positives = 174/256 (67%), Gaps = 11/256 (4%)

Query: 100 KRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHP 159
           K ++DGYNWRKYGQKQVKGS+ PRSY+KCT P CP+KKKVERSLDGQ+TEI+YKG HNH 
Sbjct: 247 KPADDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVERSLDGQVTEIIYKGQHNHE 306

Query: 160 KPTSTRRSSSSQSMQHSTCANSDLSDQ---SVGPLGNTHTDSFSMQNESSTSFGEDDFVE 216
            P     ++ S       C +SD+++Q   S   L  +  D  + Q  ++    E    E
Sbjct: 307 LPQKRGNNNGS-------CKSSDIANQFQTSNSSLNKSKRDQETSQVTTTEQMSEASDSE 359

Query: 217 QGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYR 276
           +       +G+  E+EPD KR   E  +   + +  RTV EPRI+VQTTS++D+LDDGYR
Sbjct: 360 EVGNAETSVGERHEDEPDPKRRNTEVRVSEPVASSHRTVTEPRIIVQTTSEVDLLDDGYR 419

Query: 277 WRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGS 336
           WRKYGQKVVKGNP PRSYYKCTT  C VRKHVERA+ D +AV+TTYEGKHNHDVPAAR S
Sbjct: 420 WRKYGQKVVKGNPYPRSYYKCTTPDCGVRKHVERAATDPKAVVTTYEGKHNHDVPAARTS 479

Query: 337 GYTLTRPLPNTNTGNV 352
            + L RP    NT  V
Sbjct: 480 SHQL-RPNNQHNTSTV 494

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XI90|WRKY4_ARATH Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2

 Score =  261 bits (668), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 135/248 (54%), Positives = 166/248 (66%), Gaps = 21/248 (8%)

Query: 100 KRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHP 159
           K ++DGYNWRKYGQKQVKGSE PRSY+KCT P CP+KKKVERSLDGQ+TEI+YKG HNH 
Sbjct: 226 KPADDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSLDGQVTEIIYKGQHNHE 285

Query: 160 KPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGS 219
            P +T+R +   +   +  + ++    S   LG +    F   + + T   + + V Q +
Sbjct: 286 PPQNTKRGNKDNTANINGSSINNNRGSSE--LGASQ---FQTNSSNKTKREQHEAVSQAT 340

Query: 220 PTSN---------------PIGDDDENEPDAKRWKGENDI-EGVIGTGSRTVREPRIVVQ 263
            T +                + + DENEPD KR   E  I E       RTV EPRI+VQ
Sbjct: 341 TTEHLSEASDGEEVGNGETDVREKDENEPDPKRRSTEVRISEPAPAASHRTVTEPRIIVQ 400

Query: 264 TTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYE 323
           TTS++D+LDDGYRWRKYGQKVVKGNP PRSYYKCTT GC VRKHVERA+ D +AV+TTYE
Sbjct: 401 TTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYE 460

Query: 324 GKHNHDVP 331
           GKHNHD+P
Sbjct: 461 GKHNHDLP 468

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5T3|WRK26_ARATH Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2

 Score =  261 bits (668), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 139/236 (58%), Positives = 155/236 (65%), Gaps = 54/236 (22%)

Query: 100 KRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNH 158
           K S+DGYNWRKYGQKQVKGSENPRSYFKCT+P+C  KKKVE SL  GQ+ EIVYKGSHNH
Sbjct: 114 KTSDDGYNWRKYGQKQVKGSENPRSYFKCTYPNCLTKKKVETSLVKGQMIEIVYKGSHNH 173

Query: 159 PKPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQG 218
           PKP ST+RSSS+    H   +N D                           G+D      
Sbjct: 174 PKPQSTKRSSSTAIAAHQNSSNGD---------------------------GKD------ 200

Query: 219 SPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWR 278
                 IG+D   E +AKRWK E +           V+EPR+VVQTTSDIDILDDGYRWR
Sbjct: 201 ------IGED---ETEAKRWKREEN-----------VKEPRVVVQTTSDIDILDDGYRWR 240

Query: 279 KYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAAR 334
           KYGQKVVKGNPNPRSYYKCT TGC VRKHVERA  D ++VITTYEGKH H +P  R
Sbjct: 241 KYGQKVVKGNPNPRSYYKCTFTGCFVRKHVERAFQDPKSVITTYEGKHKHQIPTPR 296

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV0|WRK20_ARATH Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1

 Score =  256 bits (654), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 128/239 (53%), Positives = 166/239 (69%), Gaps = 7/239 (2%)

Query: 102 SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKP 161
           ++DGYNWRKYGQK VKGSE PRSY+KCT P+C +KK  ERS DGQIT+I+YKG+H+HPKP
Sbjct: 210 ADDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHPKP 269

Query: 162 TSTRRSSSSQSMQHSTC----ANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQ 217
              RR+S   + Q        +++   ++  G    ++ +  +   E       DD  E 
Sbjct: 270 QPGRRNSGGMAAQEERLDKYPSSTGRDEKGSGVYNLSNPNEQTGNPEVPPISASDDGGEA 329

Query: 218 GSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRW 277
            +   N   + D+++P +KR + E  +E  I    + +REPR+VVQT S++DILDDGYRW
Sbjct: 330 AASNRN-KDEPDDDDPFSKRRRMEGAME--ITPLVKPIREPRVVVQTLSEVDILDDGYRW 386

Query: 278 RKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGS 336
           RKYGQKVV+GNPNPRSYYKCT  GCPVRKHVERASHD +AVITTYEGKH+HDVP ++ S
Sbjct: 387 RKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERASHDPKAVITTYEGKHDHDVPTSKSS 445

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG77|WRKY2_ARATH Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1

 Score =  253 bits (646), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 139/279 (49%), Positives = 165/279 (59%), Gaps = 47/279 (16%)

Query: 102 SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKP 161
           +EDGYNWRKYGQK VKGSE PRSY+KCT P+C +KKKVERS +G ITEI+YKG+HNH KP
Sbjct: 272 AEDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERSREGHITEIIYKGAHNHLKP 331

Query: 162 TSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDF------- 214
              RRS                 D +   +   +T      NE++   G   F       
Sbjct: 332 PPNRRSGMQVDGTEQVEQQQQQRDSAATWVSCNNTQQQGGSNENNVEEGSTRFEYGNQSG 391

Query: 215 ---------VEQGSPT----SNPIGDDDENEPD--------------------------A 235
                     E G P     ++    +DE+E D                          +
Sbjct: 392 SIQAQTGGQYESGDPVVVVDASSTFSNDEDEDDRGTHGSVSLGYDGGGGGGGGEGDESES 451

Query: 236 KRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYY 295
           KR K E     + G+ +R +REPR+VVQTTSD+DILDDGYRWRKYGQKVVKGNPNPRSYY
Sbjct: 452 KRRKLEAFAAEMSGS-TRAIREPRVVVQTTSDVDILDDGYRWRKYGQKVVKGNPNPRSYY 510

Query: 296 KCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAAR 334
           KCT  GC VRKHVERASHD+++VITTYEGKHNHDVPAAR
Sbjct: 511 KCTAPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAAR 549

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O22921|WRK25_ARATH Probable WRKY transcription factor 25 OS=Arabidopsis thaliana GN=WRKY25 PE=1 SV=1

 Score =  250 bits (638), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 153/330 (46%), Positives = 193/330 (58%), Gaps = 39/330 (11%)

Query: 4   NNYFDFSFQTQTRPSSNSVSVQEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAPMES 63
           NN+ DF +Q Q++PS+ S ++QE                    +  ++   K E  P E 
Sbjct: 99  NNHSDFPWQLQSQPSNASSALQET-------------------YGVQDHEKKQEMIPNE- 138

Query: 64  FSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPR 123
                 + Q N QS    +      Y  S       + S DGY WRKYGQKQVK SENPR
Sbjct: 139 -----IATQNNNQSFGTERQIKIPAYMVS-------RNSNDGYGWRKYGQKQVKKSENPR 186

Query: 124 SYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSDL 183
           SYFKCT+PDC  KK VE + DGQITEI+YKG HNHPKP  T+R S S S+  S       
Sbjct: 187 SYFKCTYPDCVSKKIVETASDGQITEIIYKGGHNHPKPEFTKRPSQS-SLPSSVNGRRLF 245

Query: 184 SDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGEND 243
           +  SV  +   H  S      SS SF   D  ++   +     D++E +P+ KR K E +
Sbjct: 246 NPASV--VSEPHDQS----ENSSISFDYSDLEQKSFKSEYGEIDEEEEQPEMKRMKREGE 299

Query: 244 IEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCP 303
            EG+    S+ V+EPR+VVQT SDID+L DG+RWRKYGQKVVKGN NPRSYYKCT  GC 
Sbjct: 300 DEGMSIEVSKGVKEPRVVVQTISDIDVLIDGFRWRKYGQKVVKGNTNPRSYYKCTFQGCG 359

Query: 304 VRKHVERASHDMRAVITTYEGKHNHDVPAA 333
           V+K VER++ D RAV+TTYEG+HNHD+P A
Sbjct: 360 VKKQVERSAADERAVLTTYEGRHNHDIPTA 389

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O65590|WRK34_ARATH Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1

 Score =  239 bits (609), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 136/267 (50%), Positives = 165/267 (61%), Gaps = 33/267 (12%)

Query: 102 SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKP 161
           ++DGYNWRKYGQK VKGSE PRSY+KCT P+C  KKKVERS +G I EI+Y G H H KP
Sbjct: 177 ADDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEAKKKVERSREGHIIEIIYTGDHIHSKP 236

Query: 162 TSTRRSS-----SSQSMQ-----HSTCANSDLSDQSVGPLG-----NTHTDSFSMQNESS 206
              RRS      + Q MQ     +   A ++ + +   P+       +H+ S  +QN  +
Sbjct: 237 PPNRRSGIGSSGTGQDMQIDATEYEGFAGTNENIEWTSPVSAELEYGSHSGSMQVQN-GT 295

Query: 207 TSFG--------------EDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGS 252
             FG              EDD     S +    G+ +E+E  +KR K E       G+ +
Sbjct: 296 HQFGYGDAAADALYRDENEDDRTSHMSVSLTYDGEVEESE--SKRRKLEAYATETSGS-T 352

Query: 253 RTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERAS 312
           R  REPR+VVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT  GC V KHVERAS
Sbjct: 353 RASREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTANGCTVTKHVERAS 412

Query: 313 HDMRAVITTYEGKHNHDVPAARGSGYT 339
            D ++V+TTY GKH H VPAAR S + 
Sbjct: 413 DDFKSVLTTYIGKHTHVVPAARNSSHV 439

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WU7|WRK58_ARATH Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=2

 Score =  226 bits (575), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 126/232 (54%), Positives = 153/232 (65%), Gaps = 30/232 (12%)

Query: 100 KRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHP 159
           K ++DGYNWRKYGQK +KG E PRSY+KCT  +CP+KKKVERS DGQIT+I+YKG H+H 
Sbjct: 164 KPADDGYNWRKYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERSSDGQITQIIYKGQHDHE 223

Query: 160 KPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGS 219
           +P + R      S +             VG  G           ESS    +D    +  
Sbjct: 224 RPQNRRGGGGRDSTE-------------VGGAGQ--------MMESS----DDSGYRKDH 258

Query: 220 PTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRK 279
              +   +DDE+ P +K  +    I+GV  T  RTV EP+I+VQT S++D+LDDGYRWRK
Sbjct: 259 DDDDDDDEDDEDLPASKIRR----IDGV-STTHRTVTEPKIIVQTKSEVDLLDDGYRWRK 313

Query: 280 YGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVP 331
           YGQKVVKGNP+PRSYYKCTT  C VRKHVERAS D +AVITTYEGKHNHDVP
Sbjct: 314 YGQKVVKGNPHPRSYYKCTTPNCTVRKHVERASTDAKAVITTYEGKHNHDVP 365

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI37|WRKY1_ARATH WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1

 Score =  209 bits (533), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 133/308 (43%), Positives = 168/308 (54%), Gaps = 46/308 (14%)

Query: 56  SEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQ 115
           SE AP  S SS   S Q+  + N              S + RE K  EDGYNWRKYGQK 
Sbjct: 79  SEKAPKVSESSGALSLQSGSEGN--------------SPFIRE-KVMEDGYNWRKYGQKL 123

Query: 116 VKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTS------------ 163
           VKG+E  RSY++CT P+C  KK++ERS  GQ+ + VY G H+HPKP +            
Sbjct: 124 VKGNEFVRSYYRCTHPNCKAKKQLERSAGGQVVDTVYFGEHDHPKPLAGAVPINQDKRSD 183

Query: 164 --TRRSSSSQ-----SMQHSTCANS-DL------SDQSVGPLGNTHTDSFSMQNESSTSF 209
             T  S   Q     S+ +  C  S D+      S  SV  L  T           S   
Sbjct: 184 VFTAVSKGEQRIDIVSLIYKLCIVSYDIMFVEKTSGSSVQTLRQTEPPKIHGGLHVSVIP 243

Query: 210 GEDDFVEQGSPTSNPIGDD---DENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTS 266
             DD     S +S   GD+   D N P AKR K   +IE  +    R+  + RIVV T +
Sbjct: 244 PADDVKTDISQSSRITGDNTHKDYNSPTAKRRKKGGNIE--LSPVERSTNDSRIVVHTQT 301

Query: 267 DIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKH 326
             DI++DGYRWRKYGQK VKG+P PRSYY+C++ GCPV+KHVER+SHD + +ITTYEGKH
Sbjct: 302 LFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKH 361

Query: 327 NHDVPAAR 334
           +HD+P  R
Sbjct: 362 DHDMPPGR 369

Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	447
409923417	587	WRKY transcription factor 17 [Dimocarpus	0.982	0.747	0.771	0.0
224140533	534	predicted protein [Populus trichocarpa]	0.961	0.805	0.634	1e-151
259121399	579	WRKY transcription factor 17 [(Populus t	0.961	0.742	0.629	1e-149
255571505	558	transcription factor, putative [Ricinus	0.890	0.713	0.622	1e-145
225434421	603	PREDICTED: probable WRKY transcription f	0.977	0.724	0.584	1e-139
183979108	603	DNA-binding protein [Vitis thunbergii]	0.977	0.724	0.584	1e-139
225439574	552	PREDICTED: probable WRKY transcription f	0.919	0.744	0.605	1e-138
297735598	513	unnamed protein product [Vitis vinifera]	0.919	0.801	0.605	1e-138
356568170	540	PREDICTED: probable WRKY transcription f	0.959	0.794	0.587	1e-136
5917653	514	zinc-finger type transcription factor WR	0.941	0.819	0.578	1e-133

>gi|409923417|gb|AEO31478.2| WRKY transcription factor 17 [Dimocarpus longan]

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/447 (77%), Positives = 379/447 (84%), Gaps = 8/447 (1%)

Query: 2   EENNYFDFSFQTQTRPSSNSVSVQEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAPM 61
           EEN++FDFSFQTQ RPSS  VSV EES KRQQE WNFNKP+K+ DFS E  G+KSEFAP 
Sbjct: 146 EENSFFDFSFQTQPRPSSTIVSV-EESTKRQQESWNFNKPSKQPDFSVEKSGMKSEFAPT 204

Query: 62  ESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSEN 121
           +SFSS+MAS+Q+N+QSN APQSG Y HY+QS+ YTREQKR+EDGYNWRKYGQKQVKGSEN
Sbjct: 205 QSFSSEMASFQSNMQSNTAPQSG-YSHYSQSTQYTREQKRAEDGYNWRKYGQKQVKGSEN 263

Query: 122 PRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANS 181
           PRSY+KCT+PDCP KKKVERSLDGQITEIVYKGSHNHPKP STRRSSS  SMQ STCANS
Sbjct: 264 PRSYYKCTYPDCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSS-HSMQPSTCANS 322

Query: 182 DLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGE 241
           ++SDQSVG L N   +SFSMQ +SS SFGED + +QGSPTSNP  DDDENEP+AKRWKGE
Sbjct: 323 EISDQSVGALANAQNESFSMQGDSSASFGEDSY-DQGSPTSNPGADDDENEPEAKRWKGE 381

Query: 242 NDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTG 301
           NDIEG IGTGSR VREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTT G
Sbjct: 382 NDIEGAIGTGSRXVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTIG 441

Query: 302 CPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPN-TNTGNVPVPIRPSV 360
           CPVRKHVE ASHD RAVITTYEGKHNHDVPAARGSGYTLTRP PN   T  VP+PIRPSV
Sbjct: 442 CPVRKHVEXASHDTRAVITTYEGKHNHDVPAARGSGYTLTRPSPNPPTTSTVPIPIRPSV 501

Query: 361 TAMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQ-STGSYGISGFAKPTGSYMMNQT 419
           +AMA+HS+ S+YSNSL N R P+SS SQAP+T+ M Q S          +P  SY MNQ 
Sbjct: 502 SAMANHSHPSSYSNSLQNARLPTSS-SQAPFTSEMPQSSGSFGFSGFGGRPNNSY-MNQI 559

Query: 420 QQSDGLFNRAKDEPRDDLFLESFLNSN 446
           QQSD +F RAK+EPR+D F ESFLNSN
Sbjct: 560 QQSDNVFFRAKEEPREDSFFESFLNSN 586

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140533|ref|XP_002323637.1| predicted protein [Populus trichocarpa] gi|222868267|gb|EEF05398.1| predicted protein [Populus trichocarpa]

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 288/454 (63%), Positives = 347/454 (76%), Gaps = 24/454 (5%)

Query: 2   EENNYFDFSFQTQTRPSS----------NSVSVQEESVKRQQEPWNFNKPTKESDFSTEN 51
           EE NY DFSF TQTRP +          NSV+V E+S+KR+QE WNF++  K++DFS++ 
Sbjct: 94  EEKNYSDFSFPTQTRPPAISSSFFQSSSNSVTV-EKSLKRKQEEWNFDQ-LKQTDFSSDQ 151

Query: 52  P-GVKSEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRK 110
             GVKSEFAP +SFSS++   Q N+QS       ++  YNQS+ Y RE KRS+DGYNWRK
Sbjct: 152 KTGVKSEFAPEQSFSSELVPLQANMQSVNTAAQPSFNQYNQSAHYMRENKRSDDGYNWRK 211

Query: 111 YGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSS 170
           YGQKQVKGSENPRSY+KCT+P+CP KKKVERSLDGQITEIVYKGSHNHPK   + R SSS
Sbjct: 212 YGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGSHNHPK-LQSSRRSSS 270

Query: 171 QSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDE 230
           Q +Q S  A+S++SDQS+ P+     +S  MQ +SS S GED+F +  S  S    +D+ 
Sbjct: 271 QLVQPSGGASSEISDQSIAPI-----ESSMMQEDSSISLGEDEFDQSSSMNSGE--EDNA 323

Query: 231 NEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPN 290
           NEPDAKRW+G+N+ E ++G GSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPN
Sbjct: 324 NEPDAKRWQGQNENESILGAGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPN 383

Query: 291 PRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPNTNTG 350
           PRSYYKCT+ GCPVRKHVERAS D+RAVITTYEGKHNHDVPAARGSGY    P    +T 
Sbjct: 384 PRSYYKCTSVGCPVRKHVERASQDLRAVITTYEGKHNHDVPAARGSGYMNKAPSIANSTA 443

Query: 351 NVPVPIRPSVTAMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQSTGSYGISGFAKP 410
           N P+PIRPSV  MA+HSN ++Y NSL++TR   +SGSQAP+T  MLQ  GS+  S F K 
Sbjct: 444 NAPIPIRPSV--MANHSNQTSYPNSLHSTRSLPASGSQAPFTLEMLQGQGSFEYSSFGKQ 501

Query: 411 TGSYMMNQTQQSDGLFNRAKDEPRDDLFLESFLN 444
            G+Y MNQTQ S+G+F RAK+EP++D F + FLN
Sbjct: 502 NGTY-MNQTQYSEGVFPRAKEEPKNDSFFDPFLN 534

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259121399|gb|ACV92019.1| WRKY transcription factor 17 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 286/454 (62%), Positives = 344/454 (75%), Gaps = 24/454 (5%)

Query: 2   EENNYFDFSFQTQTRPSS----------NSVSVQEESVKRQQEPWNFNKPTKESDFSTEN 51
           +E NY DFSF TQTRP +          NSV+V E+S+KR+QE WNF++  K++DFS++ 
Sbjct: 139 QEKNYSDFSFPTQTRPPAISSSFFQSSSNSVTV-EKSLKRKQEEWNFDQ-LKQTDFSSDQ 196

Query: 52  P-GVKSEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRK 110
             GVKSEFAP +SFSS++   Q N+QS       ++  YNQS+ Y RE K+S+DGYNWRK
Sbjct: 197 KTGVKSEFAPEQSFSSELGPLQANMQSVNTAAQPSFNQYNQSAHYMRENKKSDDGYNWRK 256

Query: 111 YGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSS 170
           YGQKQVKGSENPRSY+KCT+P+CP KKKVERSLDGQITEIVYKGSHNHPK   + R SSS
Sbjct: 257 YGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGSHNHPK-LQSSRRSSS 315

Query: 171 QSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDE 230
           Q +Q S  A+S++SDQSV P+     +S  MQ +SS S GED+F +  S  S    +D+ 
Sbjct: 316 QLVQPSGGASSEISDQSVAPV-----ESSMMQEDSSISLGEDEFDQSSSMNSGE--EDNA 368

Query: 231 NEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPN 290
           NEPDAKRW+G+N+ E ++G GSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPN
Sbjct: 369 NEPDAKRWQGQNENESILGAGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPN 428

Query: 291 PRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPNTNTG 350
           PRSYYKCT+ GCPVRKHV RAS D+RAVITTYEGKHNHDVPAARGSGY    P     T 
Sbjct: 429 PRSYYKCTSVGCPVRKHVGRASQDLRAVITTYEGKHNHDVPAARGSGYMNKAPSITNITA 488

Query: 351 NVPVPIRPSVTAMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQSTGSYGISGFAKP 410
           N P+PIRPSV  MA+HSN ++Y NSL+ TR   +SG QAP+T  MLQS GS+  S F K 
Sbjct: 489 NAPIPIRPSV--MANHSNQTSYPNSLHGTRSLPASGIQAPFTLEMLQSQGSFEYSSFGKQ 546

Query: 411 TGSYMMNQTQQSDGLFNRAKDEPRDDLFLESFLN 444
            G+Y MNQTQ S+G+F RAK+EP++D F + FLN
Sbjct: 547 NGTY-MNQTQYSEGVFPRAKEEPKNDSFFDPFLN 579

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571505|ref|XP_002526700.1| transcription factor, putative [Ricinus communis] gi|223534000|gb|EEF35722.1| transcription factor, putative [Ricinus communis]

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 277/445 (62%), Positives = 334/445 (75%), Gaps = 47/445 (10%)

Query: 2   EENNYFDFSFQTQTRPS-SNSVSVQEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAP 60
           +E  Y DFSFQTQTRP  ++S S  E+ V                        VK EF P
Sbjct: 157 DEKTYSDFSFQTQTRPLLASSSSPSEKGV------------------------VKQEFTP 192

Query: 61  MESFSSDMASYQTNVQSNA-APQ-SGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKG 118
           ++SFSS+MA  Q+++Q+NA APQ   +Y HY+Q ++Y REQ+RS+DGYNWRKYGQKQVKG
Sbjct: 193 VQSFSSEMAPLQSSMQTNAVAPQPQPSYNHYSQPASYMREQRRSDDGYNWRKYGQKQVKG 252

Query: 119 SENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTC 178
           SENPRSY+KCT+P+CP KKKVERSLDGQITEIVYKGSHNHPKP +    SSSQ +Q +  
Sbjct: 253 SENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQA---RSSSQLIQLAAG 309

Query: 179 ANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRW 238
              ++SDQS  P+     +S +MQ +SS S G+D+F +Q SP SN  G++DENEP+AKR+
Sbjct: 310 GTQEISDQSFAPV-----ESVTMQEDSSLSIGDDEF-DQSSPISNSGGNEDENEPEAKRF 363

Query: 239 KGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT 298
           KG+N+ E ++  GSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT
Sbjct: 364 KGQNENESILAAGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT 423

Query: 299 TTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPNTNTGNVPVPIRP 358
           + GCPVRKHVERASHD RAVITTYEGKHNHDVPAARGSGY   R LP     ++P+PIRP
Sbjct: 424 SIGCPVRKHVERASHDTRAVITTYEGKHNHDVPAARGSGYASNR-LPVNANSSMPIPIRP 482

Query: 359 SVTAMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPTGSYMMNQ 418
           SVTA       +NYSNSLN+TR   SSG+QAP+T  MLQ TG+ G S F KP+ SY MNQ
Sbjct: 483 SVTAN------TNYSNSLNSTR---SSGNQAPFTLQMLQGTGNIGFSNFGKPSASY-MNQ 532

Query: 419 TQQSDGLFNRAKDEPRDDLFLESFL 443
           TQ ++ +F+ AK+EP+DD FL+SFL
Sbjct: 533 TQYTENVFSGAKEEPKDDSFLDSFL 557

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434421|ref|XP_002272040.1| PREDICTED: probable WRKY transcription factor 33-like [Vitis vinifera]

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 272/465 (58%), Positives = 329/465 (70%), Gaps = 28/465 (6%)

Query: 2   EENNYFDFSFQTQTRPSSNSVSV---------QEESVKRQQEPWNFNKPTKESDFSTENP 52
           E+ NY DFSFQ Q RPS+ S S+          E++++ QQ  W+F +PTK+  FS+E  
Sbjct: 143 EDKNYLDFSFQPQARPSTTSASMFQPSTTTITTEQALRGQQPAWSFQEPTKQDSFSSEKT 202

Query: 53  GVKSEFAPMESFSSDMASYQTNVQSNAAPQSG---NYGHYNQSSAYTREQKRSEDGYNWR 109
            VKSEF   +SFS ++A+ QTN QSN    +G   +YG Y+ SS   REQ+RSEDGYNWR
Sbjct: 203 TVKSEFGSYQSFSPEIATIQTNTQSNGNGNNGFQSDYGSYHASSQSIREQRRSEDGYNWR 262

Query: 110 KYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSS 169
           KYGQKQVKGSENPRSY+KCT+P+CP KKKVERSL+GQ+TEIVYKG+HNHPKP STRRSS 
Sbjct: 263 KYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLEGQVTEIVYKGTHNHPKPQSTRRSSL 322

Query: 170 SQS--MQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGD 227
           S S  +Q S   N+++ DQ     G    DS +    SS S G+DDF EQ S  S   GD
Sbjct: 323 SSSQTIQASNPPNNEVPDQPFVAHGTGQMDSVATPENSSISMGDDDF-EQSSQKSKSGGD 381

Query: 228 D-DENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVK 286
           D DE+EP+AKRWK E++ EG+   GSRTVREPR+VVQTTSDIDILDDGYRWRKYGQKVVK
Sbjct: 382 DFDEDEPEAKRWKKESENEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVK 441

Query: 287 GNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSG-YTLTRPLP 345
           GNPNPRSYYKCT  GCPVRKHVERASHD+RAVITTYEGKHNHDVPAARGSG +++ RPLP
Sbjct: 442 GNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSHSVNRPLP 501

Query: 346 -------NTNTGNVPVPIRPSVTAMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQS 398
                   T   N+P+ IRPS+    +H   ++ +N L + R P+S    AP+T  MLQS
Sbjct: 502 LPDTTAAATTNNNMPMAIRPSI---MTHLPNNSTTNPLRHVRHPTSEAQAAPFTLEMLQS 558

Query: 399 TGSYGISGFAKPTGSYMMNQTQQSDGLFNRAKDEPRDDLFLESFL 443
              +G S F     +Y MNQ Q  D +F+R K+EPRDD+  ES L
Sbjct: 559 PDGFGFSSFGNSMATY-MNQPQHQDNVFSRTKEEPRDDMLFESLL 602

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|183979108|emb|CAP08303.1| DNA-binding protein [Vitis thunbergii]

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 272/465 (58%), Positives = 328/465 (70%), Gaps = 28/465 (6%)

Query: 2   EENNYFDFSFQTQTRPSSNSVSV---------QEESVKRQQEPWNFNKPTKESDFSTENP 52
           E+ NY DFSFQ Q RPS+ S S+          E++++ QQ  W+F +PTK+  FS+E  
Sbjct: 143 EDKNYLDFSFQPQARPSTTSASMFQPSTTTITTEQALRGQQPAWSFQEPTKQDSFSSEKT 202

Query: 53  GVKSEFAPMESFSSDMASYQTNVQSNAAPQSG---NYGHYNQSSAYTREQKRSEDGYNWR 109
            VKSEF   +SFS ++A+ QTN QSN    +G   +YG Y+ SS   REQ+RSEDGYNWR
Sbjct: 203 TVKSEFGSYQSFSPEIATIQTNTQSNGNGNNGFQSDYGSYHASSQSIREQRRSEDGYNWR 262

Query: 110 KYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSS 169
           KYGQKQVKGSENPRSY+KCT+P+CP KKKVERSL+GQ+TEIVYKG+HNHPKP STRRSS 
Sbjct: 263 KYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLEGQVTEIVYKGTHNHPKPQSTRRSSL 322

Query: 170 SQS--MQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGD 227
           S S  +Q S   N+++ DQ     G    DS +    SS S G+DDF EQ S  S   GD
Sbjct: 323 SSSQTIQASNPPNNEVPDQPFVAHGTGQMDSVATPENSSISMGDDDF-EQSSQKSKSGGD 381

Query: 228 D-DENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVK 286
           D DE+EP+AKRWK E++ EG+   GSRTVREPR+VVQTTSDIDILDDGYRWRKYGQKVVK
Sbjct: 382 DFDEDEPEAKRWKKESENEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVK 441

Query: 287 GNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSG-YTLTRPLP 345
           GNPNPRSYYKCT  GCPVRKHVERASHD+RAVITTYEGKHNHDVPAARGSG +++ RPLP
Sbjct: 442 GNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSHSVNRPLP 501

Query: 346 -------NTNTGNVPVPIRPSVTAMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQS 398
                   T   N+P+ IRPS     +H   ++ +N L + R P+S    AP+T  MLQS
Sbjct: 502 LPDTTAAATTNNNMPMAIRPST---MTHLPNNSTTNPLRHVRHPTSEAQAAPFTLEMLQS 558

Query: 399 TGSYGISGFAKPTGSYMMNQTQQSDGLFNRAKDEPRDDLFLESFL 443
              +G S F     +Y MNQ Q  D +F+R K+EPRDD+  ES L
Sbjct: 559 PDGFGFSNFGNSMATY-MNQPQHQDNVFSRTKEEPRDDMLFESLL 602

Source: Vitis thunbergii

Species: Vitis thunbergii

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439574|ref|XP_002264974.1| PREDICTED: probable WRKY transcription factor 33-like [Vitis vinifera]

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 266/439 (60%), Positives = 320/439 (72%), Gaps = 28/439 (6%)

Query: 6   YFDFSFQTQTRPSSNSVSVQEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAPMESFS 65
           + D  FQ+QTRPS        E++K  Q PWN +KP K++ F  E  GVKSEFA ++S S
Sbjct: 141 FSDLLFQSQTRPSGG------EALK-TQAPWNSDKPEKQTHFPQEKTGVKSEFASLQSLS 193

Query: 66  SDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPRSY 125
            ++AS QTN+QSN  PQSG   H   S +Y REQ+RS+DGYNWRKYGQKQVKGSENPRSY
Sbjct: 194 PEIASIQTNMQSNNIPQSGRSHHAQPSESY-REQRRSDDGYNWRKYGQKQVKGSENPRSY 252

Query: 126 FKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSDLSD 185
           +KCTFP+CP KKKVERSL+G ITEIVYKG+H+HPKP   R SS S     +   NS++S 
Sbjct: 253 YKCTFPNCPTKKKVERSLEGHITEIVYKGTHSHPKPQPKRSSSQSFPSAST---NSEISG 309

Query: 186 QSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIE 245
            S+ P+GN + DS +    SS S GEDDF +Q SP S   G DDENE +AKRWKGE + E
Sbjct: 310 HSM-PIGNPYMDSMTTSENSSVSIGEDDF-DQNSPMSRS-GGDDENEREAKRWKGEYENE 366

Query: 246 GVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVR 305
            +  + SRTV+EPR+VVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT+ GCPVR
Sbjct: 367 AISASESRTVKEPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSIGCPVR 426

Query: 306 KHVERASHDMRAVITTYEGKHNHDVPAARGSG-YTLTRPLPNTNTGNVPVPIRPSVTAMA 364
           KHVER+S D+RAV+TTYEGKHNHDVPAARGSG + +T+PLPN +T  VP PIRPSV  M 
Sbjct: 427 KHVERSSKDIRAVLTTYEGKHNHDVPAARGSGSHFVTKPLPNNSTTTVPAPIRPSV--MT 484

Query: 365 SHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPTGSYMMNQTQQSDG 424
           +HSN +  +N+   TR P +S SQAP+T  MLQS GS+G SGF +             DG
Sbjct: 485 NHSNYTT-TNANPQTR-PPTSASQAPFTLEMLQSPGSFGFSGFGR---------MSHPDG 533

Query: 425 LFNRAKDEPRDDLFLESFL 443
           +F+R K+EP+DDLF   F 
Sbjct: 534 VFSRTKEEPKDDLFQSFFC 552

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735598|emb|CBI18092.3| unnamed protein product [Vitis vinifera]

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 266/439 (60%), Positives = 320/439 (72%), Gaps = 28/439 (6%)

Query: 6   YFDFSFQTQTRPSSNSVSVQEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAPMESFS 65
           + D  FQ+QTRPS        E++K  Q PWN +KP K++ F  E  GVKSEFA ++S S
Sbjct: 102 FSDLLFQSQTRPSGG------EALK-TQAPWNSDKPEKQTHFPQEKTGVKSEFASLQSLS 154

Query: 66  SDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPRSY 125
            ++AS QTN+QSN  PQSG   H   S +Y REQ+RS+DGYNWRKYGQKQVKGSENPRSY
Sbjct: 155 PEIASIQTNMQSNNIPQSGRSHHAQPSESY-REQRRSDDGYNWRKYGQKQVKGSENPRSY 213

Query: 126 FKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSDLSD 185
           +KCTFP+CP KKKVERSL+G ITEIVYKG+H+HPKP   R SS S     +   NS++S 
Sbjct: 214 YKCTFPNCPTKKKVERSLEGHITEIVYKGTHSHPKPQPKRSSSQSFPSAST---NSEISG 270

Query: 186 QSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIE 245
            S+ P+GN + DS +    SS S GEDDF +Q SP S   G DDENE +AKRWKGE + E
Sbjct: 271 HSM-PIGNPYMDSMTTSENSSVSIGEDDF-DQNSPMSR-SGGDDENEREAKRWKGEYENE 327

Query: 246 GVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVR 305
            +  + SRTV+EPR+VVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT+ GCPVR
Sbjct: 328 AISASESRTVKEPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSIGCPVR 387

Query: 306 KHVERASHDMRAVITTYEGKHNHDVPAARGSG-YTLTRPLPNTNTGNVPVPIRPSVTAMA 364
           KHVER+S D+RAV+TTYEGKHNHDVPAARGSG + +T+PLPN +T  VP PIRPSV  M 
Sbjct: 388 KHVERSSKDIRAVLTTYEGKHNHDVPAARGSGSHFVTKPLPNNSTTTVPAPIRPSV--MT 445

Query: 365 SHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPTGSYMMNQTQQSDG 424
           +HSN +  +N+   TR P +S SQAP+T  MLQS GS+G SGF +             DG
Sbjct: 446 NHSNYTT-TNANPQTR-PPTSASQAPFTLEMLQSPGSFGFSGFGR---------MSHPDG 494

Query: 425 LFNRAKDEPRDDLFLESFL 443
           +F+R K+EP+DDLF   F 
Sbjct: 495 VFSRTKEEPKDDLFQSFFC 513

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568170|ref|XP_003552286.1| PREDICTED: probable WRKY transcription factor 33-like [Glycine max]

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 262/446 (58%), Positives = 331/446 (74%), Gaps = 17/446 (3%)

Query: 2   EENNYFDFSFQTQTRPSSNSVSVQEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAPM 61
           +E NY DFSFQTQ + S N    Q+E +K+Q + W FN+PTK+SDFS+E    KSE+  +
Sbjct: 104 DEKNYSDFSFQTQIQSSLNMF--QQEPLKKQ-DMWKFNEPTKQSDFSSERTATKSEYPSI 160

Query: 62  ESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSEN 121
           + FSS+MA+ +  +QSN+ P SG Y  Y  +S   REQKR+EDG+NWRKYGQKQVKGSEN
Sbjct: 161 QKFSSEMAAGKPEIQSNSVPGSG-YFDYTSASLSVREQKRAEDGFNWRKYGQKQVKGSEN 219

Query: 122 PRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQH--STCA 179
           PRSY+KCT P+C +KKKVE++L+GQITEIVYKG HNHPK  STRR++S QS+    S+C 
Sbjct: 220 PRSYYKCTHPNCSVKKKVEKTLEGQITEIVYKGQHNHPKLQSTRRTNS-QSINQPSSSCT 278

Query: 180 NSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWK 239
           NS +SDQSV  LGN   D FS+Q +SS S GE++F EQ S TS   GD+D   PDAKRWK
Sbjct: 279 NSGISDQSVVTLGNPQMDHFSIQEDSSASVGEENF-EQTSQTSYSGGDEDNLGPDAKRWK 337

Query: 240 GENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTT 299
            +N  +G   +GSRTVREPR+VVQTTS+IDILDDG+RWRKYGQKVVKGNPN RSYYKCT 
Sbjct: 338 EDNKNDGYSVSGSRTVREPRVVVQTTSEIDILDDGFRWRKYGQKVVKGNPNARSYYKCTA 397

Query: 300 TGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSG-YTLTRPLPNTNTGNVPVPIRP 358
            GC VRKHVERA+HD++AVITTYEGKHNHDVPAARGSG Y + R   N+   ++P PIRP
Sbjct: 398 PGCSVRKHVERAAHDIKAVITTYEGKHNHDVPAARGSGNYYMNR---NSLNSSIPAPIRP 454

Query: 359 SVTAMASHSNLSNYSNSL-NNTRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPTGSYMMN 417
           S  A+  +SN S+++NSL NNTR P ++G+Q   +    ++ GS+G S   +   S+  +
Sbjct: 455 S--AVNCYSNSSSFTNSLYNNTRHP-ATGNQESCSLDKFKNPGSFGYSALNRSMSSH-TD 510

Query: 418 QTQQSDGLFNRAKDEPRDDLFLESFL 443
           Q Q +D   ++AKDE +DD FL+SFL
Sbjct: 511 QAQYTDAAHSKAKDERKDDSFLQSFL 536

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5917653|gb|AAD55974.1|AF121353_1 zinc-finger type transcription factor WRKY1 [Petroselinum crispum]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 263/455 (57%), Positives = 311/455 (68%), Gaps = 34/455 (7%)

Query: 2   EENNYFDFSFQTQTRPSSNSVS--------VQEESVKRQQEPWNFNKPTKESDFSTENPG 53
           E  N+ DFSF  QTRP+S++ S        + E+S+KR+Q  WNF +P K++DF  +N  
Sbjct: 80  ENQNFSDFSFPAQTRPASSTSSSFIPANTNLVEDSLKRKQGGWNFEEPAKKNDFLMDNAS 139

Query: 54  VKSEFAPMESFSSDMASYQTNVQSNAAPQSG--NYGHYNQSSAYTREQKRSEDGYNWRKY 111
           V S+ A ++  S +M     N+QSNAA QS   NY   +QSS   R+Q + +DGYNWRKY
Sbjct: 140 VTSDIATLQRISPEMTMNHANMQSNAALQSNLNNYAQSSQSSQTNRDQSKLDDGYNWRKY 199

Query: 112 GQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQ 171
           GQKQVKGSENPRSY+KCT+ +CP KKKVE + DG ITEIVYKG+HNHPKP ST+RSSS Q
Sbjct: 200 GQKQVKGSENPRSYYKCTYLNCPTKKKVETTFDGHITEIVYKGNHNHPKPQSTKRSSS-Q 258

Query: 172 SMQHS--TCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDD 229
           S Q+S  T   S L       L N  ++  +    SS SFGEDD  EQGS   N  GDDD
Sbjct: 259 SYQNSIGTMPESSL-------LENGRSEPVTTPENSSLSFGEDDLFEQGS--MNKPGDDD 309

Query: 230 ENEPDAKRWKGENDI-EGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGN 288
           ENEPD+KRWKGE +  E +   GSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGN
Sbjct: 310 ENEPDSKRWKGEYESNEPMSSLGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGN 369

Query: 289 PNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPNTN 348
           PNPRSYYKCT  GCPVRKHVERASHD+RAVITTYEGKHNHDVPA RGSG       P+ N
Sbjct: 370 PNPRSYYKCTQVGCPVRKHVERASHDLRAVITTYEGKHNHDVPAPRGSGSYPAVNRPSDN 429

Query: 349 TGNVPVPIRPSVTAMASHSNLSNYSNSLNNTRFPSSSGSQAPYTAAMLQSTGSYGISGFA 408
           T + P  IRP+          +NY N L N R   ++G QAP+T  MLQ   SY  SGF 
Sbjct: 430 TTSAPTAIRPT----------TNYLNPLQNPRAQPANG-QAPFTLEMLQRPRSYEFSGFT 478

Query: 409 KPTGSYMMNQTQQSDGLFNRAKDEPRDDLFLESFL 443
             + +Y +NQ QQ+ G F+ AKDEP  D F +SFL
Sbjct: 479 NTSNTYAINQNQQASGQFSTAKDEPDVDSFFDSFL 513

Source: Petroselinum crispum

Species: Petroselinum crispum

Genus: Petroselinum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	447
TAIR|locus:2057212	519	WRKY33 "AT2G38470" [Arabidopsi	0.753	0.649	0.557	5.6e-103
TAIR|locus:2063835	513	WRKY3 "WRKY DNA-binding protei	0.648	0.565	0.493	3.7e-71
TAIR|locus:2177596	687	WRKY2 "WRKY DNA-binding protei	0.342	0.222	0.561	5e-69
TAIR|locus:2014799	514	WRKY4 "WRKY DNA-binding protei	0.664	0.577	0.471	7.2e-68
TAIR|locus:2060805	393	WRKY25 "WRKY DNA-binding prote	0.635	0.722	0.47	8.7e-67
TAIR|locus:2102147	423	WRKY58 "WRKY DNA-binding prote	0.237	0.250	0.722	5.4e-65
TAIR|locus:2133852	557	WRKY20 [Arabidopsis thaliana (	0.519	0.416	0.518	3e-62
TAIR|locus:2131503	568	WRKY34 "WRKY DNA-binding prote	0.279	0.220	0.625	1.4e-59
TAIR|locus:2045049	487	ZAP1 "zinc-dependent activator	0.270	0.248	0.539	5.4e-55
TAIR|locus:2049852	429	TTG2 "TRANSPARENT TESTA GLABRA	0.559	0.582	0.436	2.5e-49

TAIR|locus:2057212 WRKY33 "AT2G38470" [Arabidopsis thaliana (taxid:3702)]

 Score = 963 (344.1 bits), Expect = 5.6e-103, Sum P(3) = 5.6e-103
 Identities = 204/366 (55%), Positives = 241/366 (65%)

Query:    90 NQSSAYT-REQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQIT 148
             NQ+ +Y  REQ++ EDGYNWRKYGQKQVKGSENPRSY+KCTFP+CP KKKVERSL+GQIT
Sbjct:   170 NQAVSYNGREQRKGEDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGQIT 229

Query:   149 EIVYKGSHNHPKPXXXXXXXXXXXXXXXXCANSDLSDQ----SVGPLGNT--H-TDSFSM 201
             EIVYKGSHNHPKP                  N+ L       S  P  N   H +DSF M
Sbjct:   230 EIVYKGSHNHPKPQSTRRSSSSSSTFHSAVYNASLDHNRQASSDQPNSNNSFHQSDSFGM 289

Query:   202 QNESST---SFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREP 258
             Q E +T   S G+D+F EQGS   +   +D  +EP+AKRWKG+N+  G  G GS+TVREP
Sbjct:   290 QQEDNTTSDSVGDDEF-EQGSSIVSRDEEDCGSEPEAKRWKGDNETNGGNGGGSKTVREP 348

Query:   259 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAV 318
             RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTT GCPVRKHVERASHDMRAV
Sbjct:   349 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERASHDMRAV 408

Query:   319 ITTYEGKHNHDVPAARGSGYTLTRPLPNTNTGNVPVPIRPSVTAMAXXXXXXXXXXXXXX 378
             ITTYEGKHNHDVPAARGSGY   R  P  ++    VPIRP+  A+A              
Sbjct:   409 ITTYEGKHNHDVPAARGSGYATNRA-PQDSSS---VPIRPA--AIAGHSNYTTSSQAPYT 462

Query:   379 TRFPSSSGSQAPYTAAMLQSTGSYGISGFAKPTGSYMMNQTQQSDGLFNRAKDEPRDDL- 437
              +   ++ +          +TG +G +       S +  Q     G F+RAK+EP ++  
Sbjct:   463 LQMLHNNNT----------NTGPFGYAMNNNNNNSNLQTQQNFVGGGFSRAKEEPNEETS 512

Query:   438 FLESFL 443
             F +SF+
Sbjct:   513 FFDSFM 518

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0010120 "camalexin biosynthetic process" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009408 "response to heat" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0010508 "positive regulation of autophagy" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

TAIR|locus:2063835 WRKY3 "WRKY DNA-binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 150/304 (49%), Positives = 188/304 (61%)

Query:    55 KSEFAPMESFSSDMASY-QTNVQSNAAPQ--SGNYGHYNQSSAYTREQKRSEDGYNWRKY 111
             ++    + SFSS   S  + +VQ  +  Q  +     +   S      K ++DGYNWRKY
Sbjct:   199 QASLTEIPSFSSAPRSQIRASVQETSQGQRETSEISVFEHRSQPQNADKPADDGYNWRKY 258

Query:   112 GQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPXXXXXXXXXX 171
             GQKQVKGS+ PRSY+KCT P CP+KKKVERSLDGQ+TEI+YKG HNH  P          
Sbjct:   259 GQKQVKGSDFPRSYYKCTHPACPVKKKVERSLDGQVTEIIYKGQHNHELPQKRGNNNGS- 317

Query:   172 XXXXXXCANSDLSDQ---SVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDD 228
                   C +SD+++Q   S   L  +  D  + Q  ++    E    E+       +G+ 
Sbjct:   318 ------CKSSDIANQFQTSNSSLNKSKRDQETSQVTTTEQMSEASDSEEVGNAETSVGER 371

Query:   229 DENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGN 288
              E+EPD KR   E  +   + +  RTV EPRI+VQTTS++D+LDDGYRWRKYGQKVVKGN
Sbjct:   372 HEDEPDPKRRNTEVRVSEPVASSHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGN 431

Query:   289 PNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPNTN 348
             P PRSYYKCTT  C VRKHVERA+ D +AV+TTYEGKHNHDVPAAR S + L RP    N
Sbjct:   432 PYPRSYYKCTTPDCGVRKHVERAATDPKAVVTTYEGKHNHDVPAARTSSHQL-RPNNQHN 490

Query:   349 TGNV 352
             T  V
Sbjct:   491 TSTV 494

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2177596 WRKY2 "WRKY DNA-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 439 (159.6 bits), Expect = 5.0e-69, Sum P(3) = 5.0e-69
 Identities = 91/162 (56%), Positives = 114/162 (70%)

Query:   197 DSFSMQNESSTSFGEDDFVEQGSPTSNPIGDD--------DENEPDAKRWKGENDIEGVI 248
             D   + + SST   ++D  ++G+  S  +G D        + +E ++KR K E     + 
Sbjct:   405 DPVVVVDASSTFSNDEDEDDRGTHGSVSLGYDGGGGGGGGEGDESESKRRKLEAFAAEMS 464

Query:   249 GTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHV 308
             G+ +R +REPR+VVQTTSD+DILDDGYRWRKYGQKVVKGNPNPRSYYKCT  GC VRKHV
Sbjct:   465 GS-TRAIREPRVVVQTTSDVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHV 523

Query:   309 ERASHDMRAVITTYEGKHNHDVPAARGSGYTLTRPLPNTNTG 350
             ERASHD+++VITTYEGKHNHDVPAAR S +       N N+G
Sbjct:   524 ERASHDLKSVITTYEGKHNHDVPAARNSSHGGGGDSGNGNSG 565

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009942 "longitudinal axis specification" evidence=IMP

GO:0030010 "establishment of cell polarity" evidence=IMP

TAIR|locus:2014799 WRKY4 "WRKY DNA-binding protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 147/312 (47%), Positives = 191/312 (61%)

Query:    42 TKESDFSTENPGVKSEFAP---MESFSSDMASYQTNVQSNAAPQSGNYGHY-NQSSAYTR 97
             T ++  +  N   ++E+ P   ++SFSS  A   T+    A  ++ +     ++S     
Sbjct:   164 TAQAVQANANMQPQTEYPPPSQVQSFSSGQAQIPTSAPLPAQRETSDVTIIEHRSQQPLN 223

Query:    98 EQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHN 157
               K ++DGYNWRKYGQKQVKGSE PRSY+KCT P CP+KKKVERSLDGQ+TEI+YKG HN
Sbjct:   224 VDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSLDGQVTEIIYKGQHN 283

Query:   158 HPKPXXXXXXXXXXXXXXXXCA-NSDLSDQSVGPLG---NTHTDSFSMQNESSTSFGEDD 213
             H  P                 + N++     +G      N+   +   Q+E+ +     +
Sbjct:   284 HEPPQNTKRGNKDNTANINGSSINNNRGSSELGASQFQTNSSNKTKREQHEAVSQATTTE 343

Query:   214 FVEQ---GSPTSN---PIGDDDENEPDAKRWKGENDI-EGVIGTGSRTVREPRIVVQTTS 266
              + +   G    N    + + DENEPD KR   E  I E       RTV EPRI+VQTTS
Sbjct:   344 HLSEASDGEEVGNGETDVREKDENEPDPKRRSTEVRISEPAPAASHRTVTEPRIIVQTTS 403

Query:   267 DIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKH 326
             ++D+LDDGYRWRKYGQKVVKGNP PRSYYKCTT GC VRKHVERA+ D +AV+TTYEGKH
Sbjct:   404 EVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKH 463

Query:   327 NHDVPAARGSGY 338
             NHD+PAA+ S +
Sbjct:   464 NHDLPAAKSSSH 475

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2060805 WRKY25 "WRKY DNA-binding protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 655 (235.6 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
 Identities = 141/300 (47%), Positives = 176/300 (58%)

Query:    35 PWNF-NKPTKESDFSTENPGVKSEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSS 93
             PW   ++P+  S    E  GV+      E   +++A+ Q N QS    +      Y  S 
Sbjct:   105 PWQLQSQPSNASSALQETYGVQDHEKKQEMIPNEIAT-QNNNQSFGTERQIKIPAYMVS- 162

Query:    94 AYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYK 153
                   + S DGY WRKYGQKQVK SENPRSYFKCT+PDC  KK VE + DGQITEI+YK
Sbjct:   163 ------RNSNDGYGWRKYGQKQVKKSENPRSYFKCTYPDCVSKKIVETASDGQITEIIYK 216

Query:   154 GSHNHPKPXXXXXXXXXXXXXXXXCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDD 213
             G HNHPKP                  N          +   H  S   +N SS SF   D
Sbjct:   217 GGHNHPKPEFTKRPSQSSLPSS---VNGRRLFNPASVVSEPHDQS---EN-SSISFDYSD 269

Query:   214 FVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDD 273
               ++   +     D++E +P+ KR K E + EG+    S+ V+EPR+VVQT SDID+L D
Sbjct:   270 LEQKSFKSEYGEIDEEEEQPEMKRMKREGEDEGMSIEVSKGVKEPRVVVQTISDIDVLID 329

Query:   274 GYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAA 333
             G+RWRKYGQKVVKGN NPRSYYKCT  GC V+K VER++ D RAV+TTYEG+HNHD+P A
Sbjct:   330 GFRWRKYGQKVVKGNTNPRSYYKCTFQGCGVKKQVERSAADERAVLTTYEGRHNHDIPTA 389

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2102147 WRKY58 "WRKY DNA-binding protein 58" [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 5.4e-65, Sum P(2) = 5.4e-65
 Identities = 78/108 (72%), Positives = 88/108 (81%)

Query:   227 DDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVK 286
             DDDE++ D    K    I+GV  T  RTV EP+I+VQT S++D+LDDGYRWRKYGQKVVK
Sbjct:   263 DDDEDDEDLPASKIRR-IDGV-STTHRTVTEPKIIVQTKSEVDLLDDGYRWRKYGQKVVK 320

Query:   287 GNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAAR 334
             GNP+PRSYYKCTT  C VRKHVERAS D +AVITTYEGKHNHDVPAAR
Sbjct:   321 GNPHPRSYYKCTTPNCTVRKHVERASTDAKAVITTYEGKHNHDVPAAR 368

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=IMP

TAIR|locus:2133852 WRKY20 [Arabidopsis thaliana (taxid:3702)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 124/239 (51%), Positives = 160/239 (66%)

Query:   102 SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKP 161
             ++DGYNWRKYGQK VKGSE PRSY+KCT P+C +KK  ERS DGQIT+I+YKG+H+HPKP
Sbjct:   210 ADDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHPKP 269

Query:   162 XXXXXXXXXXXXXXXXC----ANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQ 217
                                  +++   ++  G    ++ +  +   E       DD  E 
Sbjct:   270 QPGRRNSGGMAAQEERLDKYPSSTGRDEKGSGVYNLSNPNEQTGNPEVPPISASDDGGEA 329

Query:   218 GSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRW 277
              +   N   + D+++P +KR + E  +E  I    + +REPR+VVQT S++DILDDGYRW
Sbjct:   330 AASNRNK-DEPDDDDPFSKRRRMEGAME--ITPLVKPIREPRVVVQTLSEVDILDDGYRW 386

Query:   278 RKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGS 336
             RKYGQKVV+GNPNPRSYYKCT  GCPVRKHVERASHD +AVITTYEGKH+HDVP ++ S
Sbjct:   387 RKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERASHDPKAVITTYEGKHDHDVPTSKSS 445

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009961 "response to 1-aminocyclopropane-1-carboxylic acid" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2131503 WRKY34 "WRKY DNA-binding protein 34" [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 1.4e-59, Sum P(2) = 1.4e-59
 Identities = 80/128 (62%), Positives = 92/128 (71%)

Query:   211 EDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDI 270
             EDD     S +    G+ +E+E  +KR K E       G+ +R  REPR+VVQTTSDIDI
Sbjct:   314 EDDRTSHMSVSLTYDGEVEESE--SKRRKLEAYATETSGS-TRASREPRVVVQTTSDIDI 370

Query:   271 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDV 330
             LDDGYRWRKYGQKVVKGNPNPRSYYKCT  GC V KHVERAS D ++V+TTY GKH H V
Sbjct:   371 LDDGYRWRKYGQKVVKGNPNPRSYYKCTANGCTVTKHVERASDDFKSVLTTYIGKHTHVV 430

Query:   331 PAARGSGY 338
             PAAR S +
Sbjct:   431 PAARNSSH 438

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0009846 "pollen germination" evidence=IMP

TAIR|locus:2045049 ZAP1 "zinc-dependent activator protein-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
 Identities = 68/126 (53%), Positives = 87/126 (69%)

Query:   212 DDFVEQGSPTSNPIGDD---DENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDI 268
             DD     S +S   GD+   D N P AKR K   +IE  +    R+  + RIVV T +  
Sbjct:   246 DDVKTDISQSSRITGDNTHKDYNSPTAKRRKKGGNIE--LSPVERSTNDSRIVVHTQTLF 303

Query:   269 DILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNH 328
             DI++DGYRWRKYGQK VKG+P PRSYY+C++ GCPV+KHVER+SHD + +ITTYEGKH+H
Sbjct:   304 DIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDH 363

Query:   329 DVPAAR 334
             D+P  R
Sbjct:   364 DMPPGR 369

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2049852 TTG2 "TRANSPARENT TESTA GLABRA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 117/268 (43%), Positives = 151/268 (56%)

Query:    89 YNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQIT 148
             + +S   T ++  S DGYNWRKYGQKQVKGSE PRSY+KCT P CP+KKKVERS++GQ++
Sbjct:   152 FTESETSTGDRS-SVDGYNWRKYGQKQVKGSECPRSYYKCTHPKCPVKKKVERSVEGQVS 210

Query:   149 EIVYKGSHNHPKPX--XXXXXXXXXXXXXXXCANSDLSDQSVG--PLGNTHTDSFSMQNE 204
             EIVY+G HNH KP                     S  S+ S+G  P  N ++  ++ Q+ 
Sbjct:   211 EIVYQGEHNHSKPSCPLPRRASSSISSGFQKPPKSIASEGSMGQDPNNNLYSPLWNNQSN 270

Query:   205 SSTSFGEDDFVEQG---SPTSNPIGDDDENEPDAKR--WKGENDIEGVIGTGSRTVREPR 259
              ST     + + +G   +P    +     + P       K     EG +   SR+ R   
Sbjct:   271 DSTQ-NRTEKMSEGCVITPFEFAVPRSTNSNPGTSDSGCKSSQCDEGELDDPSRSKRRKN 329

Query:   260 I-------VVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERAS 312
                     V Q + + D L+DG+RWRKYGQKVV GN  PRSYY+CT+  C  RKHVERAS
Sbjct:   330 EKQSSEAGVSQGSVESDSLEDGFRWRKYGQKVVGGNAYPRSYYRCTSANCRARKHVERAS 389

Query:   313 HDMRAVITTYEGKHNHDVPAARGSGYTL 340
              D RA ITTYEGKHNH +  +  S  TL
Sbjct:   390 DDPRAFITTYEGKHNHHLLLSPPSSSTL 417

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010214 "seed coat development" evidence=IMP

GO:0009957 "epidermal cell fate specification" evidence=RCA;IMP

GO:0001708 "cell fate specification" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8S8P5	WRK33_ARATH	No assigned EC number	0.6054	0.7449	0.6416	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	447
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	3e-36
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	3e-34
smart00774	59	smart00774, WRKY, DNA binding domain	4e-34
smart00774	59	smart00774, WRKY, DNA binding domain	3e-30

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  127 bits (321), Expect = 3e-36
 Identities = 41/59 (69%), Positives = 48/59 (81%)

Query: 271 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHD 329
           LDDGY WRKYGQK VKG+P PRSYY+CT+ GCPV+K VER+S D + V  TYEG+HNH 
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHP 59

Length = 60

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  121 bits (307), Expect = 3e-34
 Identities = 42/60 (70%), Positives = 48/60 (80%), Gaps = 1/60 (1%)

Query: 102 SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPK 160
            +DGYNWRKYGQK VKGS  PRSY++CT P CP+KK+VERS  D QI EI Y+G HNHPK
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHPK 60

Length = 60

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  121 bits (306), Expect = 4e-34
 Identities = 38/59 (64%), Positives = 46/59 (77%), Gaps = 1/59 (1%)

Query: 271 LDDGYRWRKYGQKVVKGNPNPRSYYKCT-TTGCPVRKHVERASHDMRAVITTYEGKHNH 328
           LDDGY+WRKYGQKV+KG+P PRSYY+CT T GCP +K V+R+  D   V  TYEG+H H
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  111 bits (279), Expect = 3e-30
 Identities = 32/58 (55%), Positives = 42/58 (72%), Gaps = 2/58 (3%)

Query: 103 EDGYNWRKYGQKQVKGSENPRSYFKCTF-PDCPMKKKVERSL-DGQITEIVYKGSHNH 158
           +DGY WRKYGQK +KGS  PRSY++CT+   CP KK+V+RS  D  + E+ Y+G H H
Sbjct: 2   DDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	447
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.96
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.95
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.95
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.94
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	88.08
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	87.52
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	83.92

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.96  E-value=7.4e-31  Score=205.87  Aligned_cols=59  Identities=66%  Similarity=1.301  Sum_probs=52.6

Q ss_pred             CCCCchhhhcCccccCCCCCCCccccccCCCCCcchhhhhhcCCCCeEEEEEecccCCC
Q 013222          271 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHD  329 (447)
Q Consensus       271 ~dDGY~WRKYGQK~IkGn~~PRsYYrCt~~gC~arK~Vqr~~~D~~~~itTY~G~HnH~  329 (447)
                      |+|||+|||||||.|+|+++||+||||+..+|+|+|+|||+.+|+.+|+|||+|+|||+
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            58999999999999999999999999999999999999999999999999999999997

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.95  E-value=1.4e-29  Score=198.43  Aligned_cols=58  Identities=64%  Similarity=1.263  Sum_probs=56.5

Q ss_pred             CCCCchhhhcCccccCCCCCCCccccccC-CCCCcchhhhhhcCCCCeEEEEEecccCC
Q 013222          271 LDDGYRWRKYGQKVVKGNPNPRSYYKCTT-TGCPVRKHVERASHDMRAVITTYEGKHNH  328 (447)
Q Consensus       271 ~dDGY~WRKYGQK~IkGn~~PRsYYrCt~-~gC~arK~Vqr~~~D~~~~itTY~G~HnH  328 (447)
                      ++|||.|||||||.|+|+++||+||||+. +||+|+|+|||+++|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999998 99999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.95  E-value=2.2e-29  Score=197.59  Aligned_cols=59  Identities=61%  Similarity=1.217  Sum_probs=50.5

Q ss_pred             CCCCccccccCcccCCCCCCCCCcccCCCCCCcccccccccc-CCceeeeeeeCCCCCCC
Q 013222          102 SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPK  160 (447)
Q Consensus       102 ~dDGy~WRKYGQK~Ikgs~~pRsYYrCt~~~C~akK~Vqr~~-dg~~~~i~Y~G~HnH~~  160 (447)
                      ++|||+|||||||.|+|+++||+||||++.+|+|+|+|||+. |+.+++|+|+|+|||++
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k   60 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHPK   60 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence            489999999999999999999999999999999999999986 77889999999999985

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.94  E-value=3e-28  Score=190.99  Aligned_cols=57  Identities=56%  Similarity=1.154  Sum_probs=54.8

Q ss_pred             CCCCccccccCcccCCCCCCCCCcccCCC-CCCcccccccccc-CCceeeeeeeCCCCC
Q 013222          102 SEDGYNWRKYGQKQVKGSENPRSYFKCTF-PDCPMKKKVERSL-DGQITEIVYKGSHNH  158 (447)
Q Consensus       102 ~dDGy~WRKYGQK~Ikgs~~pRsYYrCt~-~~C~akK~Vqr~~-dg~~~~i~Y~G~HnH  158 (447)
                      .+|||.|||||||.|+|+++||+||||++ ++|+|+|+|||+. |+.+++|+|+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            48999999999999999999999999999 9999999999996 789999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.08  E-value=0.13  Score=38.54  Aligned_cols=48  Identities=31%  Similarity=0.712  Sum_probs=24.5

Q ss_pred             CCCCchhhhcCccccCCCCCCCccccccC---CCCCcchhhhhhcCCCCeEEEEEecccCC
Q 013222          271 LDDGYRWRKYGQKVVKGNPNPRSYYKCTT---TGCPVRKHVERASHDMRAVITTYEGKHNH  328 (447)
Q Consensus       271 ~dDGY~WRKYGQK~IkGn~~PRsYYrCt~---~gC~arK~Vqr~~~D~~~~itTY~G~HnH  328 (447)
                      +-|||+-++....      ....|++|+.   .+|+|+-.+.  .++ ..+ +...++|||
T Consensus        12 ~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~-~~~-~~~~~~HnH   62 (62)
T PF04500_consen   12 VYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGD-GRV-VRTNGEHNH   62 (62)
T ss_dssp             EETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----T-TEE-EE-S---SS
T ss_pred             EECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCC-CEE-EECCCccCC
Confidence            3489988776555      4568999984   3899988776  223 333 455599998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.52  E-value=0.14  Score=38.25  Aligned_cols=50  Identities=22%  Similarity=0.488  Sum_probs=25.1

Q ss_pred             ccCCCCccccccCcccCCCCCCCCCcccCCCC---CCccccccccccCCceeeeeeeCCCCC
Q 013222          100 KRSEDGYNWRKYGQKQVKGSENPRSYFKCTFP---DCPMKKKVERSLDGQITEIVYKGSHNH  158 (447)
Q Consensus       100 ~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCt~~---~C~akK~Vqr~~dg~~~~i~Y~G~HnH  158 (447)
                      .+.-|||.-++....      ..+.|++|+..   +|+|+-.+.  .++. ..+...++|||
T Consensus        10 ~L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~-~~~~~~~~HnH   62 (62)
T PF04500_consen   10 KLVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDG-RVVRTNGEHNH   62 (62)
T ss_dssp             EEEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TT-EEEE-S---SS
T ss_pred             EEEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCC-EEEECCCccCC
Confidence            356788887765544      44679999874   799977766  2222 33445599998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=83.92  E-value=0.53  Score=38.31  Aligned_cols=30  Identities=30%  Similarity=0.519  Sum_probs=24.8

Q ss_pred             CCCccccccccccCCceeeeeeeCCCCCCC
Q 013222          131 PDCPMKKKVERSLDGQITEIVYKGSHNHPK  160 (447)
Q Consensus       131 ~~C~akK~Vqr~~dg~~~~i~Y~G~HnH~~  160 (447)
                      -+|+|+-.|-+..+|....+.+..+|||+.
T Consensus        60 tgC~a~i~v~~~~~~~w~v~~~~~~HNH~L   89 (91)
T PF03101_consen   60 TGCKARINVKRRKDGKWRVTSFVLEHNHPL   89 (91)
T ss_pred             cCCCEEEEEEEccCCEEEEEECcCCcCCCC
Confidence            489999888887777766778999999974

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	447
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		3e-31
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		2e-27

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score =  133 bits (334), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 66/71 (92%)
Query: 262 VQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITT 321
           VQTTS++D+LDDGYRWRKYGQKVVKGNP PRSYYKCTT GC VRKHVERA+ D +AV+TT
Sbjct: 8   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 67
Query: 322 YEGKHNHDVPA 332
           YEGKHNHD+PA
Sbjct: 68  YEGKHNHDLPA 78

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 51/73 (69%), Positives = 64/73 (87%)
Query: 259 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAV 318
           RIVV T +  DI++DGYRWRKYGQK VKG+P PRSYY+C++ GCPV+KHVER+SHD + +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61
Query: 319 ITTYEGKHNHDVP 331
           ITTYEGKH+HD+P
Sbjct: 62  ITTYEGKHDHDMP 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	447
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	6e-49
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	1e-26
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	4e-46
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	3e-27
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  160 bits (407), Expect = 6e-49
 Identities = 59/77 (76%), Positives = 66/77 (85%)

Query: 256 REPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDM 315
                 VQTTS++D+LDDGYRWRKYGQKVVKGNP PRSYYKCTT GC VRKHVERA+ D 
Sbjct: 2   SSGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDP 61

Query: 316 RAVITTYEGKHNHDVPA 332
           +AV+TTYEGKHNHD+PA
Sbjct: 62  KAVVTTYEGKHNHDLPA 78

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  101 bits (254), Expect = 1e-26
 Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 103 EDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKP 161
           +DGY WRKYGQK VKG+  PRSY+KCT P C ++K VER+  D +     Y+G HNH  P
Sbjct: 18  DDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  153 bits (388), Expect = 4e-46
 Identities = 51/75 (68%), Positives = 64/75 (85%)

Query: 259 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAV 318
           RIVV T +  DI++DGYRWRKYGQK VKG+P PRSYY+C++ GCPV+KHVER+SHD + +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 319 ITTYEGKHNHDVPAA 333
           ITTYEGKH+HD+P  
Sbjct: 62  ITTYEGKHDHDMPPG 76

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  102 bits (257), Expect = 3e-27
 Identities = 34/61 (55%), Positives = 42/61 (68%), Gaps = 1/61 (1%)

Query: 103 EDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKP 161
            DGY WRKYGQK VKGS  PRSY++C+ P CP+KK VERS  D ++    Y+G H+H  P
Sbjct: 15  NDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74

Query: 162 T 162
            
Sbjct: 75  P 75

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 40/354 (11%), Positives = 89/354 (25%), Gaps = 110/354 (31%)

Query: 5   NYFDFSFQT--QTRPSS--NSVSVQEESVKRQQE-PWNFNKPTKESDFSTENPGVKSEFA 59
           N F+ S +    TR     + +S    +                +S    +    + +  
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRPQDL 318

Query: 60  PMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQK-RSEDGYNWRKYGQKQVK- 117
           P E            + +N  P+       +  +   R+     +   NW+     ++  
Sbjct: 319 PREV-----------LTTN--PR-----RLSIIAESIRDGLATWD---NWKHVNCDKLTT 357

Query: 118 ------GSENP---RSYFK-CT-FP-DCPMKKKVERSL----DGQITEIVYKGSHN---- 157
                     P   R  F   + FP    +   +   +          +V    H     
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 158 --HPKPTS---------TRRSSSSQSMQHSTCANS-------DLSDQSVGPLGN------ 193
              PK ++          +    ++   H +  +        D  D     L        
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477

Query: 194 -------THTDSFSMQNESSTSFGEDDFVEQ-----GSPTSNPIGDDD------------ 229
                   H +  ++       F    F+EQ      +  +      +            
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDF---RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534

Query: 230 -ENEPDAKRWKGENDIEG-VIGTGSRTVREP-----RIVVQTTSDIDILDDGYR 276
            +N+P  +R    N I   +       +        RI +    +  I ++ ++
Sbjct: 535 CDNDPKYERL--VNAILDFLPKIEENLICSKYTDLLRIALMAEDE-AIFEEAHK 585

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	447
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	99.96
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	99.96

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=1e-35  Score=242.26  Aligned_cols=76  Identities=67%  Similarity=1.280  Sum_probs=73.3

Q ss_pred             ceeeeeccCCcccCCCCchhhhcCccccCCCCCCCccccccCCCCCcchhhhhhcCCCCeEEEEEecccCCCCCCC
Q 013222          258 PRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAA  333 (447)
Q Consensus       258 ~rvvv~t~Se~d~~dDGY~WRKYGQK~IkGn~~PRsYYrCt~~gC~arK~Vqr~~~D~~~~itTY~G~HnH~~p~~  333 (447)
                      .||+|+|.+++++++|||+|||||||.|||+++||+||||+.+||+|+|+|||+.+|+.+++|||+|+|||+.|.+
T Consensus         1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~~   76 (76)
T 2ayd_A            1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPG   76 (76)
T ss_dssp             CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCCC
T ss_pred             CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCCC
Confidence            3799999999999999999999999999999999999999999999999999999999999999999999999853

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=1.7e-35  Score=241.97  Aligned_cols=75  Identities=79%  Similarity=1.297  Sum_probs=69.8

Q ss_pred             ceeeeeccCCcccCCCCchhhhcCccccCCCCCCCccccccCCCCCcchhhhhhcCCCCeEEEEEecccCCCCCC
Q 013222          258 PRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPA  332 (447)
Q Consensus       258 ~rvvv~t~Se~d~~dDGY~WRKYGQK~IkGn~~PRsYYrCt~~gC~arK~Vqr~~~D~~~~itTY~G~HnH~~p~  332 (447)
                      .+|+|+|.+++++++|||+|||||||.|||+++||+||||+.+||+|+|+|||+.+|+.+++|||+|+|||+.|+
T Consensus         4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A            4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999984

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=99.96  E-value=5.2e-30  Score=208.68  Aligned_cols=66  Identities=52%  Similarity=0.980  Sum_probs=61.5

Q ss_pred             eccccCCCCccccccCcccCCCCCCCCCcccCCCCCCcccccccccc-CCceeeeeeeCCCCCCCCC
Q 013222           97 REQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKPT  162 (447)
Q Consensus        97 ~~~~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCt~~~C~akK~Vqr~~-dg~~~~i~Y~G~HnH~~p~  162 (447)
                      .+..+++|||+|||||||.|||+++||+||||++++|+|+|+|||+. |+.+++|+|+|+|||+.|.
T Consensus         9 ~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            9 TLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             CSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            45678899999999999999999999999999999999999999986 6788999999999999885

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=99.96  E-value=6.1e-30  Score=209.17  Aligned_cols=66  Identities=52%  Similarity=0.965  Sum_probs=60.9

Q ss_pred             eccccCCCCccccccCcccCCCCCCCCCcccCCCCCCcccccccccc-CCceeeeeeeCCCCCCCCC
Q 013222           97 REQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKPT  162 (447)
Q Consensus        97 ~~~~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCt~~~C~akK~Vqr~~-dg~~~~i~Y~G~HnH~~p~  162 (447)
                      .+..+++|||+|||||||.|||+++||+||||++++|+|+|+|||+. |+.++.|+|+|+|||+.|.
T Consensus        12 s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A           12 SEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             CCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             CCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            34677899999999999999999999999999999999999999975 6788999999999999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	447
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	6e-37
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	2e-26

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  127 bits (321), Expect = 6e-37
 Identities = 59/71 (83%), Positives = 66/71 (92%)

Query: 262 VQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITT 321
           VQTTS++D+LDDGYRWRKYGQKVVKGNP PRSYYKCTT GC VRKHVERA+ D +AV+TT
Sbjct: 1   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 60

Query: 322 YEGKHNHDVPA 332
           YEGKHNHD+PA
Sbjct: 61  YEGKHNHDLPA 71

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 99.5 bits (248), Expect = 2e-26
 Identities = 35/67 (52%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query: 96  TREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKG 154
           T E    +DGY WRKYGQK VKG+  PRSY+KCT P C ++K VER+  D +     Y+G
Sbjct: 4   TSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEG 63

Query: 155 SHNHPKP 161
            HNH  P
Sbjct: 64  KHNHDLP 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	447
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	100.0
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	99.96

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=4.8e-35  Score=233.49  Aligned_cols=71  Identities=83%  Similarity=1.402  Sum_probs=68.7

Q ss_pred             eeccCCcccCCCCchhhhcCccccCCCCCCCccccccCCCCCcchhhhhhcCCCCeEEEEEecccCCCCCC
Q 013222          262 VQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPA  332 (447)
Q Consensus       262 v~t~Se~d~~dDGY~WRKYGQK~IkGn~~PRsYYrCt~~gC~arK~Vqr~~~D~~~~itTY~G~HnH~~p~  332 (447)
                      |+|.++++++||||+|||||||.|||+++||+||||+.+||+|+|+|||+.+|+.+++|||+|+|||+.|+
T Consensus         1 v~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           1 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             CccccccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            57889999999999999999999999999999999999999999999999999999999999999999884

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=1.1e-30  Score=208.26  Aligned_cols=66  Identities=52%  Similarity=0.965  Sum_probs=61.3

Q ss_pred             eccccCCCCccccccCcccCCCCCCCCCcccCCCCCCcccccccccc-CCceeeeeeeCCCCCCCCC
Q 013222           97 REQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKPT  162 (447)
Q Consensus        97 ~~~~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCt~~~C~akK~Vqr~~-dg~~~~i~Y~G~HnH~~p~  162 (447)
                      .+...+||||.|||||||.|||+++||+||||++++|+|+|+|||+. |+.+++|+|+|+|||+.|.
T Consensus         5 ~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           5 SEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             cccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            44667899999999999999999999999999999999999999986 6789999999999999874