Citrus Sinensis ID: 013239

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------
MVVSYQLRYSVCTLLILWLFVTANASTEKHELDSRFLKNEQLQSSNNSSMPERIEFDDEEWTHEHAVDNPDEIAATVDMAIRNSTERRKLGYFSCGTGNPIDDCWRCDSRWYLRRKRLADCAIGFGRNAIGGRDGRYYVVSDPGDDDAVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRYLAPENTFAKEVTKRVDTSTAVWRGWNWRSEGDMLLNGAYFTPSGAGSGASYARASSLGAKSSSSVGTLTSNAGALRCRRGRLC
ccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccccccccccccccHHHcccccccHHHHHHHHHHHHccccccEEcccccccccccccccccccccHHHHHHccccccccccccccccccccEEEEcccccccccccccHHHHHHHHccccEEEEEEEcEEEEEccEEEEccccCECcccEEEEEECcccEEEEEEEEEEEEccEEEccccccccccccccccccccccccccEEEEEccccEEEEcccccccccccEEEEEccEEEEEEcEEEccccccccccccccccccccEEEEEEEcccccccccccccccccEEEEECcEEEcccEEEECcccccCEEECccEEEcccccccccccccccccccCCcccCEECcccccccccccccccccccccccccccccccccccHHHHccccccccccccccc
***SYQLRYSVCTLLILWLFVTANASTEKHELDSRFLKN***************EFDDEEWTHEHAVDNPDEIAATVDMAIRNSTERRKLGYFSCGTGNPIDDCWRCDSRWYLRRKRLADCAIGFGRNAIGGRDGRYYVVSDPGDDDAVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRYLAPENTFAKEVTKRVDTSTAVWRGWNWRSEGDMLLNGAYFTPSGA*************************NAGALRCRR**LC
xxxxxxxxHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SSSSSSSSSSSSSSSSSSSSSSSSSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MVVSYQLRYSVCTLLILWLFVTANASTEKHELDSRFLKNEQLQSSNNSSMPERIEFDDEEWTHEHAVDNPDEIAATVDMAIRNSTERRKLGYFSCGTGNPIDDCWRCDSRWYLRRKRLADCAIGFGRNAIGGRDGRYYVVSDPGDDDAVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRYLAPENTFAKEVTKRVDTSTAVWRGWNWRSEGDMLLNGAYFTPSGAGSGASYARASSLGAKSSSSVGTLTSNAGALRCRRGRLC

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Probable pectate lyase 15 confidentQ944R1
Pectate lyase Involved in the degradation of pectin. May assist in the removal and modification of an existing pectin matrix in order to allow the deposition of newly synthesized walls polymers for a specialized function or to create an architecture that is extensible.probableO24554
Putative pectate lyase 14 probableQ9SVQ6

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
4.-.-.-Lyases.probable
4.2.-.-Carbon-oxygen lyases.probable
4.2.2.-Acting on polysaccharides.probable
4.2.2.2Pectate lyase.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1PXZ, chain A
Confidence level:very confident
Coverage over the Query: 98-440
View the alignment between query and template
View the model in PyMOL