Citrus Sinensis ID: 013239

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------
MVVSYQLRYSVCTLLILWLFVTANASTEKHELDSRFLKNEQLQSSNNSSMPERIEFDDEEWTHEHAVDNPDEIAATVDMAIRNSTERRKLGYFSCGTGNPIDDCWRCDSRWYLRRKRLADCAIGFGRNAIGGRDGRYYVVSDPGDDDAVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRYLAPENTFAKEVTKRVDTSTAVWRGWNWRSEGDMLLNGAYFTPSGAGSGASYARASSLGAKSSSSVGTLTSNAGALRCRRGRLC
ccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccccccccccHHHcccccccHHHHHHHHHHHHccccccEEccccccccccccccccccccHHHHHHHccccccccccccccccccccEEEEccccccccccccHHHHHHHHHccccEEEEEEEcEEEEEccEEEEccccEEEcccEEEEEEEcccEEEEEEEEEEEEccEEEccccccccccccccccccccccccccEEEEEccccEEEEcccccccccccEEEEEccEEEEEEcEEEccccccccccccccccccccEEEEEEEcccccccccccccccccEEEEEEcEEEcccEEEEEcccccEEEEEccEEEcccccccccccccccccccEEcccEEEEcccccccccccccccccccccccccccccccccccHHHHccccccccccccccc
cccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHccccccccccccccccccccHHHHHHHHHHHHHccccccccccccEEEEEEccccccccccccccEEEEEEEcccEEEEEcccEEEEEccEEEEEccccEccccEEEEEEcccEEEEEEEEEEEEEcEEEEEcccccccEEEcccccccccccccccEEEEEccccEEEEcccHHccccccEEEEcccEEEEEEccEEEEEEEccEEccccccHHHcccccEEEEccEEEEEEEcccEEcccEEEEEccEEccEEEEEEcccccccEEccccEEEccccccccEEEEEccccccccccccEEccccEEEcccEEEccccccccccccccccccccHHHHHHHHHccccccccccccc
MVVSYQLRYSVCTLLILWLFVTAnastekheldsrflkneqlqssnnssmperiefddeewthehavdnpdeIAATVDMAIRNsterrklgyfscgtgnpiddcwrcdsrwYLRRKRLADCAigfgrnaiggrdgryyvvsdpgdddavnpkpgtlrhaviqdrplwIVFKRDMVITLKQELIMNSFktidgrgvnvhiangaciTIQFITNVIIHginihdckptgnamvrsspshygwrtmadgdaisifgsshiwidhnslsncadGLIDAIMGSTAITVSNNYFTHHNevmllghsdsytrDKVMQVTIAYNHFGEGLiqrmprcrhgyfhvvnndYTHWVMYAIggsanptinsqgnrylapentfAKEVTKRVDTStavwrgwnwrsegdmllngayftpsgagsgasYARASslgakssssvgtltsnagalrcrrgrlc
MVVSYQLRYSVCTLLILWLFVTANASTEKHEldsrflkneqlqssnnssmpERIEFDDEEWTHEHAVDNPDEIAATVDMAIRNSTERRKLgyfscgtgnpiddcwRCDSRWYLRRKRLADcaigfgrnaiggrdgRYYVVSDPgdddavnpkpgtlrhaviqdrplwiVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRYLAPENTFakevtkrvdtstavwrgwnwrseGDMLLNGAYFTPSGAGSGASYARASSLgakssssvgtltsnagalrcrrgrlc
MVVSYQLRYSVCTLLILWLFVTANASTEKHELDSRFLKNEQLQSSNNSSMPERIEFDDEEWTHEHAVDNPDEIAATVDMAIRNSTERRKLGYFSCGTGNPIDDCWRCDSRWYLRRKRLADCAIGFGRNAIGGRDGRYYVVSDPGDDDAVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRYLAPENTFAKEVTKRVDTSTAVWRGWNWRSEGDMLLNGAYFTPsgagsgasyarasslgakssssVGTLTSNAGALRCRRGRLC
**VSYQLRYSVCTLLILWLFVTAN************************************************IAATVDMAIRNSTERRKLGYFSCGTGNPIDDCWRCDSRWYLRRKRLADCAIGFGRNAIGGRDGRYYVVSD***********GTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRYLAPENTFAKEVTKRVDTSTAVWRGWNWRSEGDMLLNGAYFT******************************************
******L**SVCTLLILWLFVTANASTEKHELDSRFLKN***************EFDDEEWTHEHAVDNPDEIAATVDM****************GTGNPIDDCWRCDSRWYLRRKRLADCAIGFGRNAIGGRDGRYYVVSDPGDDDAVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRYLAPENTFAKEVTKRVDTSTAVWRGWNWRSEGDMLLNGAYFTPSGAGSGASYARASSLGAKSSSSVGTLTSNAGALRCRR**LC
MVVSYQLRYSVCTLLILWLFVTANASTEKHELDSRFLKNEQ***********RIEFDDEEWTHEHAVDNPDEIAATVDMAIRNSTERRKLGYFSCGTGNPIDDCWRCDSRWYLRRKRLADCAIGFGRNAIGGRDGRYYVVSDPGDDDAVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRYLAPENTFAKEVTKRVDTSTAVWRGWNWRSEGDMLLNGAYFTPSGA*************************NAGALRCRRGRLC
***SYQLRYSVCTLLILWLFVTANASTEK****SRFLKNEQLQSSNNSSMPERIEFDDEEWTHEHAVDNPDEIAATVDMAIRNSTERRKLGYFSCGTGNPIDDCWRCDSRWYLRRKRLADCAIGFGRNAIGGRDGRYYVVSDPGDDDAVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRYLAPENTFAKEVTKRVDTSTAVWRGWNWRSEGDMLLNGAYFTPSG***************************************
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iiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVVSYQLRYSVCTLLILWLFVTANASTEKHELDSRFLKNEQLQSSNNSSMPERIEFDDEEWTHEHAVDNPDEIAATVDMAIRNSTERRKLGYFSCGTGNPIDDCWRCDSRWYLRRKRLADCAIGFGRNAIGGRDGRYYVVSDPGDDDAVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRYLAPENTFAKEVTKRVDTSTAVWRGWNWRSEGDMLLNGAYFTPSGAGSGASYARASSLGAKSSSSVGTLTSNAGALRCRRGRLC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query447 2.2.26 [Sep-21-2011]
Q944R1470 Probable pectate lyase 15 yes no 0.921 0.876 0.782 0.0
Q9M8Z8416 Probable pectate lyase 8 no no 0.870 0.935 0.848 0.0
Q9LJ42440 Probable pectate lyase 10 no no 0.984 1.0 0.758 0.0
Q940Q1431 Probable pectate lyase 1 no no 0.903 0.937 0.791 0.0
Q93WF1417 Probable pectate lyase 20 no no 0.870 0.932 0.853 0.0
Q9SVQ6438 Putative pectate lyase 14 no no 0.975 0.995 0.759 0.0
Q9LRM5452 Probable pectate lyase 9 no no 0.991 0.980 0.660 1e-174
Q9FXD8408 Probable pectate lyase 5 no no 0.847 0.928 0.734 1e-166
Q93Z25432 Probable pectate lyase 22 no no 0.852 0.881 0.710 1e-163
Q9C5M8408 Probable pectate lyase 18 no no 0.852 0.933 0.725 1e-161
>sp|Q944R1|PLY15_ARATH Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1 Back     alignment and function desciption
 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/418 (78%), Positives = 362/418 (86%), Gaps = 6/418 (1%)

Query: 35  RFLKNEQLQSSNNSSMPERIEFDDEEWTHEHAV-DNPD----EIAATVDMAIRNSTERRK 89
           R LK E+ QS N+S+M      D E    +HAV D+PD    E+A  V M+ +N T RRK
Sbjct: 54  RKLKTEEFQSLNSSTMAA-TRLDGEPQQQQHAVADDPDMVADEVAKLVQMSEQNRTARRK 112

Query: 90  LGYFSCGTGNPIDDCWRCDSRWYLRRKRLADCAIGFGRNAIGGRDGRYYVVSDPGDDDAV 149
           LG+FSCGTGNPIDDCWRCD  W+  RKRLADC IGFGRNAIGGRDGR+Y+V+DP D+D V
Sbjct: 113 LGFFSCGTGNPIDDCWRCDRNWHKNRKRLADCGIGFGRNAIGGRDGRFYIVTDPTDEDVV 172

Query: 150 NPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITIQF 209
           NPKPGTLRHAVIQ+ PLWIVFKRDMVI LKQELIMNSFKTID RG NVHIANGACITIQF
Sbjct: 173 NPKPGTLRHAVIQEEPLWIVFKRDMVIELKQELIMNSFKTIDARGSNVHIANGACITIQF 232

Query: 210 ITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCAD 269
           ITNVIIHG++IHDCKPTGNAMVRSSPSH+GWRTMADGDA+SIFGSSHIWIDHNSLS+CAD
Sbjct: 233 ITNVIIHGLHIHDCKPTGNAMVRSSPSHFGWRTMADGDAVSIFGSSHIWIDHNSLSHCAD 292

Query: 270 GLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRC 329
           GL+DA+MGSTAITVSNN+FTHHNEVMLLGHSDSYT+DK+MQVTIAYNHFGEGL+QRMPRC
Sbjct: 293 GLVDAVMGSTAITVSNNHFTHHNEVMLLGHSDSYTKDKLMQVTIAYNHFGEGLVQRMPRC 352

Query: 330 RHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRYLAPENTFAKEVTKRVDTSTAVWRGW 389
           RHGYFHVVNNDYTHW MYAIGGSA PTINSQGNRY AP + FAKEVTKRV+T  + W+ W
Sbjct: 353 RHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYAAPMDRFAKEVTKRVETDASEWKKW 412

Query: 390 NWRSEGDMLLNGAYFTPSGAGSGASYARASSLGAKSSSSVGTLTSNAGALRCRRGRLC 447
           NWRSEGD+LLNGA+F PSGAG+ ASY RASSL AK SS V T+TS AGAL CR+GR C
Sbjct: 413 NWRSEGDLLLNGAFFRPSGAGASASYGRASSLAAKPSSMVDTITSTAGALGCRKGRPC 470

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: 2
>sp|Q9M8Z8|PLY8_ARATH Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1 Back     alignment and function description
>sp|Q9LJ42|PLY10_ARATH Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2 Back     alignment and function description
>sp|Q940Q1|PLY1_ARATH Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2 Back     alignment and function description
>sp|Q93WF1|PLY20_ARATH Probable pectate lyase 20 OS=Arabidopsis thaliana GN=At5g48900 PE=2 SV=1 Back     alignment and function description
>sp|Q9SVQ6|PLY14_ARATH Putative pectate lyase 14 OS=Arabidopsis thaliana GN=At4g13210 PE=2 SV=2 Back     alignment and function description
>sp|Q9LRM5|PLY9_ARATH Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2 SV=1 Back     alignment and function description
>sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2 Back     alignment and function description
>sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1 Back     alignment and function description
>sp|Q9C5M8|PLY18_ARATH Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query447
255560225441 Pectate lyase precursor, putative [Ricin 0.984 0.997 0.810 0.0
62550728437 ripening-related pectate lyase [Mangifer 0.977 1.0 0.805 0.0
449529108444 PREDICTED: probable pectate lyase 15-lik 0.986 0.993 0.792 0.0
225464210445 PREDICTED: probable pectate lyase 15 [Vi 0.914 0.919 0.864 0.0
147833135445 hypothetical protein VITISV_008675 [Viti 0.914 0.919 0.864 0.0
357505415444 Pectate lyase 1-27 [Medicago truncatula] 0.975 0.981 0.789 0.0
297741911430 unnamed protein product [Vitis vinifera] 0.892 0.927 0.852 0.0
225433409432 PREDICTED: probable pectate lyase 15 [Vi 0.892 0.923 0.852 0.0
449442407449 PREDICTED: probable pectate lyase 15-lik 0.923 0.919 0.828 0.0
449432456447 PREDICTED: probable pectate lyase 15-lik 0.968 0.968 0.797 0.0
>gi|255560225|ref|XP_002521130.1| Pectate lyase precursor, putative [Ricinus communis] gi|223539699|gb|EEF41281.1| Pectate lyase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/448 (81%), Positives = 395/448 (88%), Gaps = 8/448 (1%)

Query: 1   MVVSYQLR-YSVCTLLILWLFVTANASTEKHELDSRFLKNEQLQSSNNSSMPERIEFDDE 59
           M V Y LR   +CTL+IL LFVT NASTE   L+SR  +    QSS+NS+M +       
Sbjct: 1   MAVPYSLRRLCICTLIILLLFVTVNASTE---LNSRLGEKTHFQSSDNSTMADG---SGG 54

Query: 60  EWTHEHAVDNPDEIAATVDMAIRNSTERRKLGYFSCGTGNPIDDCWRCDSRWYLRRKRLA 119
            W +EHAV++P++IA+ VD +IRNST RR LG+FSC TGNPIDDCWRCD  W L RKRLA
Sbjct: 55  AW-NEHAVEDPEDIASMVDESIRNSTARRNLGFFSCVTGNPIDDCWRCDPHWQLHRKRLA 113

Query: 120 DCAIGFGRNAIGGRDGRYYVVSDPGDDDAVNPKPGTLRHAVIQDRPLWIVFKRDMVITLK 179
           +C IGFGRNA+GGRDGRYYVV+D GDDD VNPKPGTLRHAVIQDRPLWIVFKRDMVITLK
Sbjct: 114 NCGIGFGRNAVGGRDGRYYVVTDSGDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVITLK 173

Query: 180 QELIMNSFKTIDGRGVNVHIANGACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYG 239
           QELIMNSFKTID RG NVHIANGACITIQF+TN+IIHG++IHDCKPTGNAMVRSSP+HYG
Sbjct: 174 QELIMNSFKTIDARGTNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHYG 233

Query: 240 WRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFTHHNEVMLLGH 299
           WRTMADGDAISIFGSSHIW+DHNSLSNCADGLIDAIMGSTAIT+SNNYFTHHNEVMLLGH
Sbjct: 234 WRTMADGDAISIFGSSHIWVDHNSLSNCADGLIDAIMGSTAITISNNYFTHHNEVMLLGH 293

Query: 300 SDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINS 359
           SDSYTRDK+MQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHW MYAIGGSA+PTINS
Sbjct: 294 SDSYTRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINS 353

Query: 360 QGNRYLAPENTFAKEVTKRVDTSTAVWRGWNWRSEGDMLLNGAYFTPSGAGSGASYARAS 419
           QGNRYLAP N FAKEVTKRV+TS  VW+ WNWRSEGD+LLNGAYFTPSGAG+ ASYARAS
Sbjct: 354 QGNRYLAPNNAFAKEVTKRVETSNNVWKHWNWRSEGDLLLNGAYFTPSGAGAAASYARAS 413

Query: 420 SLGAKSSSSVGTLTSNAGALRCRRGRLC 447
           SLGAKSSS VG +TS AGAL CRRGR C
Sbjct: 414 SLGAKSSSMVGAITSTAGALVCRRGRQC 441

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|62550728|gb|AAX88800.1| ripening-related pectate lyase [Mangifera indica] Back     alignment and taxonomy information
>gi|449529108|ref|XP_004171543.1| PREDICTED: probable pectate lyase 15-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225464210|ref|XP_002265100.1| PREDICTED: probable pectate lyase 15 [Vitis vinifera] gi|297744293|emb|CBI37263.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147833135|emb|CAN75298.1| hypothetical protein VITISV_008675 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357505415|ref|XP_003622996.1| Pectate lyase 1-27 [Medicago truncatula] gi|355498011|gb|AES79214.1| Pectate lyase 1-27 [Medicago truncatula] Back     alignment and taxonomy information
>gi|297741911|emb|CBI33346.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225433409|ref|XP_002285639.1| PREDICTED: probable pectate lyase 15 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449442407|ref|XP_004138973.1| PREDICTED: probable pectate lyase 15-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449432456|ref|XP_004134015.1| PREDICTED: probable pectate lyase 15-like [Cucumis sativus] gi|449487510|ref|XP_004157662.1| PREDICTED: probable pectate lyase 15-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query447
TAIR|locus:2093131440 AT3G24670 [Arabidopsis thalian 0.955 0.970 0.749 1.6e-180
TAIR|locus:2077622416 AT3G07010 [Arabidopsis thalian 0.870 0.935 0.802 2.1e-180
TAIR|locus:2005487470 AT4G13710 [Arabidopsis thalian 0.921 0.876 0.744 4.4e-180
TAIR|locus:2154384417 AT5G48900 [Arabidopsis thalian 0.870 0.932 0.807 1.5e-179
TAIR|locus:2197808431 AT1G04680 [Arabidopsis thalian 0.903 0.937 0.752 1.1e-176
TAIR|locus:2093761452 AT3G24230 [Arabidopsis thalian 0.968 0.957 0.659 7e-157
TAIR|locus:2008550408 AT1G67750 [Arabidopsis thalian 0.847 0.928 0.700 9.5e-153
TAIR|locus:2121914408 AT4G24780 [Arabidopsis thalian 0.852 0.933 0.688 1.5e-152
TAIR|locus:2161992432 AT5G63180 [Arabidopsis thalian 0.852 0.881 0.676 4.2e-150
TAIR|locus:2086656412 AT3G27400 [Arabidopsis thalian 0.854 0.927 0.651 2e-143
TAIR|locus:2093131 AT3G24670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1752 (621.8 bits), Expect = 1.6e-180, P = 1.6e-180
 Identities = 326/435 (74%), Positives = 361/435 (82%)

Query:    13 TLLILWLFVTANASTEKHELDSRFLKNEQLQSSNNSSMPERIEFDDEEWTHEHAVDNPDE 72
             TL+IL L +  N+ST   E +   L +    SS+NSS   ++  DD  W +EHAV NP+E
Sbjct:    14 TLIILALCI--NSSTMAQETED--LNSH---SSSNSSTANKLPNDDGAW-NEHAVKNPEE 65

Query:    73 IAATVDMAIRNSTERRKLGYFSCGTGNPIDDCWRCDSRWYLRRKRLADCAIGFGRNAIGG 132
             +AA VDM I+NSTERR+LG+FSC TGNPIDDCWRCD  W+LRRKRLA+CAIGFGRNAIGG
Sbjct:    66 VAAMVDMKIKNSTERRRLGFFSCATGNPIDDCWRCDRNWHLRRKRLANCAIGFGRNAIGG 125

Query:   133 RDGRYYVVSDPGDDDAVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDG 192
             RDGRYYVV+DP D DAVNP+PGTLRHAVIQDRPLWIVFKRDMVITL QELIMNSFKTIDG
Sbjct:   126 RDGRYYVVTDPSDHDAVNPRPGTLRHAVIQDRPLWIVFKRDMVITLTQELIMNSFKTIDG 185

Query:   193 RGVNVHIANGACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIF 252
             RGVNV IA GACITIQ++TN+IIHGIN+HDC+ TGNAMVRSSPSHYGWRTMADGDAISIF
Sbjct:   186 RGVNVAIAGGACITIQYVTNIIIHGINVHDCRRTGNAMVRSSPSHYGWRTMADGDAISIF 245

Query:   253 GSSHIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQVT 312
             GSSHIWIDHNSLSNCADGLIDAIMGSTAIT+SNNY THHNEVML+GHSDSYTRDK+MQVT
Sbjct:   246 GSSHIWIDHNSLSNCADGLIDAIMGSTAITISNNYMTHHNEVMLMGHSDSYTRDKLMQVT 305

Query:   313 IAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRYLAPENTFA 372
             IAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNR+LAP N FA
Sbjct:   306 IAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRFLAPGNPFA 365

Query:   373 KEVTKRVDTSTAVWRGWNWRSEGDMLLNGAYFTPXXXXXXXXXXXXXXXXXXXXXXVGTL 432
             KEVTKRV +    W+ WNWRS+GD++LNGAYFT                       V  L
Sbjct:   366 KEVTKRVGSWQGEWKQWNWRSQGDLMLNGAYFTKSGAAAPASYARASSLGAKPASVVSML 425

Query:   433 TSNAGALRCRRGRLC 447
             T ++GAL+CR G  C
Sbjct:   426 TYSSGALKCRIGMRC 440
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0030570 "pectate lyase activity" evidence=ISS
TAIR|locus:2077622 AT3G07010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005487 AT4G13710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154384 AT5G48900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197808 AT1G04680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093761 AT3G24230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008550 AT1G67750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121914 AT4G24780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161992 AT5G63180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086656 AT3G27400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P40973PLY_LILLO4, ., 2, ., 2, ., 20.55920.84340.8686N/Ano
Q944R1PLY15_ARATH4, ., 2, ., 2, ., 20.78220.92170.8765yesno
Q93Z25PLY22_ARATH4, ., 2, ., 2, ., 20.71010.85230.8819nono
Q9FXD8PLY5_ARATH4, ., 2, ., 2, ., 20.73490.84780.9289nono
O24554PLY_ZINEL4, ., 2, ., 2, ., 20.70630.84110.9376N/Ano
P24396PLY18_SOLLC4, ., 2, ., 2, ., 20.66140.85450.9455N/Ano
Q9LJ42PLY10_ARATH4, ., 2, ., 2, ., 20.75830.98431.0nono
Q9M8Z8PLY8_ARATH4, ., 2, ., 2, ., 20.84870.87020.9350nono
Q9C5M8PLY18_ARATH4, ., 2, ., 2, ., 20.72510.85230.9338nono
Q940Q1PLY1_ARATH4, ., 2, ., 2, ., 20.79120.90380.9373nono
Q93WF1PLY20_ARATH4, ., 2, ., 2, ., 20.85380.87020.9328nono
P15722PLY59_SOLLC4, ., 2, ., 2, ., 20.58760.81430.8106N/Ano
Q9SVQ6PLY14_ARATH4, ., 2, ., 2, ., 20.75940.97530.9954nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.20.976
4th Layer4.2.2.20.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query447
smart00656190 smart00656, Amb_all, Amb_all domain 2e-82
pfam00544200 pfam00544, Pec_lyase_C, Pectate lyase 1e-71
COG3866345 COG3866, PelB, Pectate lyase [Carbohydrate transpo 6e-26
>gnl|CDD|214765 smart00656, Amb_all, Amb_all domain Back     alignment and domain information 
 Score =  251 bits (644), Expect = 2e-82
 Identities = 109/206 (52%), Positives = 128/206 (62%), Gaps = 28/206 (13%)

Query: 173 DMVITLKQ--ELIMNSFKTIDGRGVNVHIANGACITIQFITNVIIHGINIHDCKPTGNAM 230
           D+ ITL     +I+NS KTIDGRG  V I  G  +TI+ ++NVII  + IHD KP     
Sbjct: 1   DVTITLDNAGTIIINSNKTIDGRGSKVEIKGG-GLTIKSVSNVIIRNLTIHDPKP----- 54

Query: 231 VRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCA---------DGLIDAIMGSTAI 281
                  YG     DGDAISI GSS++WIDH SLS C          DGLID   GST +
Sbjct: 55  ------VYGS----DGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYV 104

Query: 282 TVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDY 341
           T+SNNYF +H +VMLLGHSDS T D  M+VTIA+N+FG  L QR PR R GY HV NN Y
Sbjct: 105 TISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPRVRFGYVHVYNNYY 163

Query: 342 THWVMYAIGGSANPTINSQGNRYLAP 367
           T W  YAIGG    TI S+GN + AP
Sbjct: 164 TGWTSYAIGGRMGATILSEGNYFEAP 189

Length = 190
>gnl|CDD|215986 pfam00544, Pec_lyase_C, Pectate lyase Back     alignment and domain information
>gnl|CDD|226384 COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 447
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 100.0
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 100.0
smart00656190 Amb_all Amb_all domain. 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.85
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.1
PLN02218431 polygalacturonase ADPG 98.07
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.01
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.91
PLN02155394 polygalacturonase 97.89
PLN03003456 Probable polygalacturonase At3g15720 97.83
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.79
PLN02793443 Probable polygalacturonase 97.76
PLN02218431 polygalacturonase ADPG 97.64
PF0443156 Pec_lyase_N: Pectate lyase, N terminus; InterPro: 97.63
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 97.63
PLN03010409 polygalacturonase 97.62
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.52
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.49
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.46
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.35
PLN03003456 Probable polygalacturonase At3g15720 97.34
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.32
PLN02155394 polygalacturonase 97.29
PLN03010409 polygalacturonase 97.26
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.25
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.19
PLN02793443 Probable polygalacturonase 96.92
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 96.76
PLN02188404 polygalacturonase/glycoside hydrolase family prote 96.74
PLN02480343 Probable pectinesterase 96.7
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 96.31
PLN02197588 pectinesterase 96.22
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 95.97
smart00656190 Amb_all Amb_all domain. 95.92
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 95.11
PLN02416541 probable pectinesterase/pectinesterase inhibitor 94.49
PLN02176340 putative pectinesterase 94.34
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 93.67
PLN02497331 probable pectinesterase 93.6
PLN02506537 putative pectinesterase/pectinesterase inhibitor 93.49
PLN02432293 putative pectinesterase 93.48
PLN02682369 pectinesterase family protein 93.46
PLN02170529 probable pectinesterase/pectinesterase inhibitor 93.42
PLN02304379 probable pectinesterase 93.36
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 93.29
PLN02313587 Pectinesterase/pectinesterase inhibitor 93.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 92.89
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 92.79
PLN02488509 probable pectinesterase/pectinesterase inhibitor 92.73
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 92.69
PLN02773317 pectinesterase 92.6
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 92.5
PLN02301548 pectinesterase/pectinesterase inhibitor 92.38
PLN02314586 pectinesterase 92.31
PLN02916502 pectinesterase family protein 92.25
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 92.16
PLN02484587 probable pectinesterase/pectinesterase inhibitor 92.11
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 92.09
PLN02217670 probable pectinesterase/pectinesterase inhibitor 92.06
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 91.91
PLN02665366 pectinesterase family protein 91.64
PLN02634359 probable pectinesterase 91.5
PLN02468565 putative pectinesterase/pectinesterase inhibitor 91.47
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 90.88
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 89.97
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 89.77
PLN02671359 pectinesterase 89.25
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 88.68
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 88.19
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 87.53
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 81.78
PRK10531422 acyl-CoA thioesterase; Provisional 81.72
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.3e-56  Score=437.68  Aligned_cols=277  Identities=30%  Similarity=0.351  Sum_probs=225.3

Q ss_pred             CcccccC-------ccccCCCCeEEEEcCCCCCCCCCCCCcchhhhhcCCCCeEEEEeeceEEEeC------ceEEecCC
Q 013239          121 CAIGFGR-------NAIGGRDGRYYVVSDPGDDDAVNPKPGTLRHAVIQDRPLWIVFKRDMVITLK------QELIMNSF  187 (447)
Q Consensus       121 ~A~GFG~-------~ttGG~gG~vy~VT~~~D~~~~~~~pGtLR~Av~q~~P~~IVF~~~g~I~L~------~~L~I~Sn  187 (447)
                      ..+||+.       +||||.||.+++|++.+|          |..+++..+|.++|+-+.|+|.+.      .+|.+.||
T Consensus        33 ~~~GfA~~~~~~~~GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sN  102 (345)
T COG3866          33 SFAGFASNPAGSKTGTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSN  102 (345)
T ss_pred             cccccccccCCCCCCcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccc
Confidence            3567765       689999999999999999          899999999996666667889886      56778999


Q ss_pred             cEEEccCceEEEecCceEEEeccccEEEEceEEEeccCCCCcccccCCCCcCCcccCCCCeEEe-ecCceEEEEeeEeec
Q 013239          188 KTIDGRGVNVHIANGACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISI-FGSSHIWIDHNSLSN  266 (447)
Q Consensus       188 kTI~G~gA~~~I~~G~gi~i~~a~NVIIRnL~i~~~~pg~~~~i~~s~~~~g~r~~~d~DaIsI-~gs~nVWIDHcS~S~  266 (447)
                      |||.|.|++++|. |++|.|+.+.|||||||+|++...++            |    ..|+|+| .+++|||||||+|+.
T Consensus       103 kTivG~g~~a~~~-g~gl~i~~a~NVIirNltf~~~~~~d------------~----~~D~Isi~~~~~nIWIDH~tf~~  165 (345)
T COG3866         103 KTIVGSGADATLV-GGGLKIRDAGNVIIRNLTFEGFYQGD------------P----NYDAISIYDDGHNIWIDHNTFSG  165 (345)
T ss_pred             cEEEeeccccEEE-eceEEEEeCCcEEEEeeEEEeeccCC------------C----CCCcEEeccCCeEEEEEeeEecc
Confidence            9999999999998 88999999999999999999864221            1    2699999 679999999999999


Q ss_pred             --------CCCCeEEeeeCCceEEEEcceeccCCeeeEecCCCCc-cCCccceEEEEeeEecCCCcCCCceeccCeEEEE
Q 013239          267 --------CADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSY-TRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVV  337 (447)
Q Consensus       267 --------~~DGliDi~~gS~~ITISnn~f~~H~k~mLiG~sD~~-~~d~~~~VTihhN~F~~~~~qR~Pr~R~G~~Hvv  337 (447)
                              ..||++|+++++++||||||+|++|+|.+|+|.+|+. .+|++.+||+||||| +|+.||+||+|||.+||+
T Consensus       166 ~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~vHvy  244 (345)
T COG3866         166 GSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGMVHVY  244 (345)
T ss_pred             ccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCceEeeEEEEe
Confidence                    7999999999999999999999999999999999985 457899999999999 799999999999999999


Q ss_pred             cceeeCce--eeeeecCCCceEEEeccEEeCCCCccccceeeeccCCCCcccCCeeeccCceEEeceEEccCCCC-----
Q 013239          338 NNDYTHWV--MYAIGGSANPTINSQGNRYLAPENTFAKEVTKRVDTSTAVWRGWNWRSEGDMLLNGAYFTPSGAG-----  410 (447)
Q Consensus       338 NN~y~nw~--~Yaigg~~~~~I~segN~F~a~~~~~~k~vt~r~~~~~~~~~~w~w~s~Gd~~~nGa~f~~sg~~-----  410 (447)
                      ||||....  .||++-+..++|++|+|||+....+...--|++.   .++|.   .       -+|++|..++..     
T Consensus       245 NNYy~~~~~~g~a~~iG~~AkiyvE~NyF~~~~~~~~f~dt~~~---~GY~~---~-------d~gsy~~~s~~~~~~~~  311 (345)
T COG3866         245 NNYYEGNPKFGVAITIGTSAKIYVENNYFENGSEGLGFLDTKGT---SGYAN---Q-------DSGSYLNSSKSMSVRAG  311 (345)
T ss_pred             ccccccCcccceEEeeccceEEEEecceeccCCCCceeeecCCc---cceEE---e-------ccCceecccCCcccccC
Confidence            99999655  4566555559999999999997554321112222   12211   1       335555555433     


Q ss_pred             -CCCCCCCCCccccCCCCccccc-cccccc
Q 013239          411 -SGASYARASSLGAKSSSSVGTL-TSNAGA  438 (447)
Q Consensus       411 -~~~~y~~~~~~~~~~~s~v~~l-t~~aG~  438 (447)
                       ....+...++|++.|...|++. |+.||+
T Consensus       312 G~~w~ps~~Y~Ytvd~~~dVks~Vt~yAGa  341 (345)
T COG3866         312 GVTWNPSSYYSYTVDPPEDVKSFVTNYAGA  341 (345)
T ss_pred             CccCCCCCCcccccCChHHhhhhhhccccc
Confidence             2345677788999988877766 888884

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query447
1pxz_A346 1.7 Angstrom Crystal Structure Of Jun A 1, The Majo 2e-87
3zsc_A340 Catalytic Function And Substrate Recognition Of The 3e-16
1vbl_A416 Structure Of The Thermostable Pectate Lyase Pl 47 L 4e-14
1bn8_A420 Bacillus Subtilis Pectate Lyase Length = 420 6e-13
3krg_A399 Structural Insights Into Substrate Specificity And 1e-12
2bsp_A420 Bacillus Subtilis Pectate Lyase R279k Mutant Length 1e-12
2nzm_A399 Hexasaccharide I Bound To Bacillus Subtilis Pectate 4e-12
1ooc_A361 Mutations In The T1.5 Loop Of Pectate Lyase A Lengt 1e-11
1pcl_A355 Unusual Structural Features In The Parallel Beta-He 2e-11
1jrg_A361 Crystal Structure Of The R3 Form Of Pectate Lyase A 7e-11
2qx3_A330 Structure Of Pectate Lyase Ii From Xanthomonas Camp 9e-10
2qxz_A330 Pectate Lyase R236f From Xanthomonas Campestris Len 1e-09
2qy1_A330 Pectate Lyase A31g/r236f From Xanthomonas Campestri 1e-09
3vmv_A326 Crystal Structure Of Pectate Lyase Bsp165pela From 2e-07
1plu_A353 Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu 9e-05
2ewe_A353 Crystal Structure Of Pectate Lyase C R218k Mutant I 2e-04
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen Length = 346 Back     alignment and structure 
Iteration: 1

 Score =  319 bits (818), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 157/314 (50%), Positives = 214/314 (68%), Gaps = 14/314 (4%)
Query: 99  NPIDDCWRCDSRWYLRRKRLADCAIGFGRNAIGGRDGRYYVVSDPGDDDAVNPKPGTLRH 158
           NPID CWR DS W   R +LADCA+GFG + +GG+ G +Y V+   DD+ VNP PGTLR+
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTST-DDNPVNPTPGTLRY 60
Query: 159 AVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGA-CITIQFITNVIIHG 217
              +++ LWI+F ++M I LK  L +   KTIDGRG +VH+ NG  C+ ++ +++VI+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120
Query: 218 INIHDCKPT--GNAMVRSS----PSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGL 271
           ++IH C  +  G+ +V  S    P H       DGDAI++   ++ WIDHNSLS+C+DGL
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVH-----AQDGDAITMRNVTNAWIDHNSLSDCSDGL 175
Query: 272 IDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRH 331
           ID  +GST IT+SNN+F +H++VMLLGH D+Y  DK M+VT+A+N FG    QRMPR R+
Sbjct: 176 IDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARY 235
Query: 332 GYFHVVNNDYTHWVMYAIGGSANPTINSQGNRYLAPENTFAKEVTKRVD-TSTAVWRGWN 390
           G  HV NN+Y  W +YAIGGS+NPTI S+GN + AP  ++ KEVTKR+   S +    W 
Sbjct: 236 GLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWV 295
Query: 391 WRSEGDMLLNGAYF 404
           WRS  D  +NGAYF
Sbjct: 296 WRSTRDAFINGAYF 309
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima Length = 340 Back     alignment and structure
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 Length = 416 Back     alignment and structure
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase Length = 420 Back     alignment and structure
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase Length = 399 Back     alignment and structure
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant Length = 420 Back     alignment and structure
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase Length = 399 Back     alignment and structure
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A Length = 361 Back     alignment and structure
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases Length = 355 Back     alignment and structure
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi Length = 361 Back     alignment and structure
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 330 Back     alignment and structure
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 Length = 326 Back     alignment and structure
>pdb|1PLU|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion In The Putative Calcium Binding Site Length = 353 Back     alignment and structure
>pdb|2EWE|A Chain A, Crystal Structure Of Pectate Lyase C R218k Mutant In Complex With Pentagalacturonic Acid Length = 353 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query447
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 1e-137
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 1e-96
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 5e-88
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 9e-84
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 1e-82
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 2e-72
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 4e-72
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 1e-68
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 1e-68
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 4e-68
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 3e-59
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 2e-04
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 4e-04
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Length = 346 Back     alignment and structure
 Score =  397 bits (1021), Expect = e-137
 Identities = 162/345 (46%), Positives = 224/345 (64%), Gaps = 5/345 (1%)

Query: 99  NPIDDCWRCDSRWYLRRKRLADCAIGFGRNAIGGRDGRYYVVSDPGDDDAVNPKPGTLRH 158
           NPID CWR DS W   R +LADCA+GFG + +GG+ G +Y V+   DD+ VNP PGTLR+
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTST-DDNPVNPTPGTLRY 60

Query: 159 AVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIA-NGACITIQFITNVIIHG 217
              +++ LWI+F ++M I LK  L +   KTIDGRG +VH+   G C+ ++ +++VI+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 218 INIHDCKPTGNAMVRSSPSHYGWRTMA-DGDAISIFGSSHIWIDHNSLSNCADGLIDAIM 276
           ++IH C  +    V  S S       A DGDAI++   ++ WIDHNSLS+C+DGLID  +
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 277 GSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHV 336
           GST IT+SNN+F +H++VMLLGH D+Y  DK M+VT+A+N FG    QRMPR R+G  HV
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV 240

Query: 337 VNNDYTHWVMYAIGGSANPTINSQGNRYLAPENTFAKEVTKRVDTSTA-VWRGWNWRSEG 395
            NN+Y  W +YAIGGS+NPTI S+GN + AP  ++ KEVTKR+   +      W WRS  
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTR 300

Query: 396 DMLLNGAYFTPSGAGSGAS-YARASSLGAKSSSSVGTLTSNAGAL 439
           D  +NGAYF  SG     + Y    +   ++ ++   LT NAG +
Sbjct: 301 DAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGVV 345
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Length = 340 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Length = 361 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Length = 355 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Length = 326 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Length = 399 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Length = 330 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Length = 359 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Length = 416 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Length = 353 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Length = 359 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query447
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 100.0
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 100.0
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 100.0
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 100.0
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 100.0
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 100.0
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 100.0
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 100.0
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 100.0
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 100.0
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 98.52
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 98.5
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 98.18
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 98.16
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.13
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 98.1
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 98.02
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 98.0
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 98.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.98
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.97
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.97
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.9
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 97.89
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.81
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.8
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 97.77
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.76
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.73
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.72
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 97.71
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.65
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 97.54
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.51
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.36
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.34
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.28
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.24
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.24
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.23
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.21
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.15
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 96.96
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 96.86
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.69
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 96.61
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.57
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.41
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 96.34
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 96.32
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.29
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 96.24
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 96.2
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 95.89
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.84
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 95.78
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 95.65
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.6
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 95.46
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 95.28
2inu_A410 Insulin fructotransferase; right-handed parallel b 95.28
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 94.84
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 93.83
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 92.09
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 83.33
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 82.06
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 80.27
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
Probab=100.00  E-value=9.9e-104  Score=798.68  Aligned_cols=342  Identities=47%  Similarity=0.872  Sum_probs=326.9

Q ss_pred             CCccccccccCccccccccccccCcccccCccccCCCCeEEEEcCCCCCCCCCCCCcchhhhhcCCCCeEEEEeeceEEE
Q 013239           98 GNPIDDCWRCDSRWYLRRKRLADCAIGFGRNAIGGRDGRYYVVSDPGDDDAVNPKPGTLRHAVIQDRPLWIVFKRDMVIT  177 (447)
Q Consensus        98 ~n~id~cwr~~~~w~~~r~~lA~~A~GFG~~ttGG~gG~vy~VT~~~D~~~~~~~pGtLR~Av~q~~P~~IVF~~~g~I~  177 (447)
                      +||||+||||+|+|+.+||+||+||+|||++||||+||++|+||+++| ++++|+|||||+||++++||||||+++|+|+
T Consensus         1 ~~~~~~c~~~~~~w~~~~~~~~~~a~Gfg~~ttGG~gG~v~~VT~~~d-~~~~~~~GsLr~av~~~~P~~Ivf~~~g~I~   79 (346)
T 1pxz_A            1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCccchhhccCcchhhhhhhcccCCccccCCCcCCCCccEEEECChHH-cccccCcchhHHHhccCCCeEEEEcCCcEEe
Confidence            699999999999999999999999999999999999999999999876 6899999999999999999999999999999


Q ss_pred             eCceEEecCCcEEEccCceEEEec-CceEEEeccccEEEEceEEEeccCCCCccc-ccCCCCcCCcccCCCCeEEeecCc
Q 013239          178 LKQELIMNSFKTIDGRGVNVHIAN-GACITIQFITNVIIHGINIHDCKPTGNAMV-RSSPSHYGWRTMADGDAISIFGSS  255 (447)
Q Consensus       178 L~~~L~I~SnkTI~G~gA~~~I~~-G~gi~i~~a~NVIIRnL~i~~~~pg~~~~i-~~s~~~~g~r~~~d~DaIsI~gs~  255 (447)
                      |+++|.|.|||||+|||++++|.+ |+||+|++++|||||||+|+++.|.+++.| |+++.|+|++...++|||+|++++
T Consensus        80 l~~~l~V~sn~TI~G~ga~~~i~G~G~gi~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~g~~~~~~~DaI~i~~s~  159 (346)
T 1pxz_A           80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             cCccEEecCCeEEEccCCceEEeCCcceEEEEccCCEEEEeeEEEeeccCCCceEEeccCcccccccCCCCCEEEEecCc
Confidence            999999999999999999999985 689999999999999999999998887777 999999998888999999999999


Q ss_pred             eEEEEeeEeecCCCCeEEeeeCCceEEEEcceeccCCeeeEecCCCCccCCccceEEEEeeEecCCCcCCCceeccCeEE
Q 013239          256 HIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFH  335 (447)
Q Consensus       256 nVWIDHcS~S~~~DGliDi~~gS~~ITISnn~f~~H~k~mLiG~sD~~~~d~~~~VTihhN~F~~~~~qR~Pr~R~G~~H  335 (447)
                      |||||||+|+|+.||++|+++++++||||||+|++|+|+||+|++|+++.|+.++||||||||++++.+||||+|+|++|
T Consensus       160 nVwIDHcs~s~~~Dg~id~~~~s~~vTISnn~f~~H~k~~l~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r~g~~h  239 (346)
T 1pxz_A          160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVH  239 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEE
T ss_pred             eEEEEeeEEecCCCCcEeeccCcceEEEEeeEEecCCceeEECCCCccccCCceEEEEEeeEEeCCccccCccEecceEE
Confidence            99999999999999999999999999999999999999999999999888888999999999966899999999999999


Q ss_pred             EEcceeeCceeeeeecCCCceEEEeccEEeCCCCccccceeeeccCC-CCcccCCeeeccCceEEeceEEccCCCCCCC-
Q 013239          336 VVNNDYTHWVMYAIGGSANPTINSQGNRYLAPENTFAKEVTKRVDTS-TAVWRGWNWRSEGDMLLNGAYFTPSGAGSGA-  413 (447)
Q Consensus       336 vvNN~y~nw~~Yaigg~~~~~I~segN~F~a~~~~~~k~vt~r~~~~-~~~~~~w~w~s~Gd~~~nGa~f~~sg~~~~~-  413 (447)
                      ++||||++|.+|++++++++++++|||||++++++..|++++|.+++ +.+|++|+|+++||+|+||++|++||.+.+. 
T Consensus       240 v~NN~~~~~~~~~i~~~~~~~i~~egN~F~~~~~~~~k~v~~~~~~~~~~~~~~~~~~~~g~~~~nG~~~~~s~~~~~~~  319 (346)
T 1pxz_A          240 VANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETN  319 (346)
T ss_dssp             EESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCC
T ss_pred             EEeeEEEcccceEEeccCCceEEEECCEEECCCCCcccccEEEeccCCccccccccEecCCCeEEeceEecCCCCCccCC
Confidence            99999999999999999999999999999999999899999998776 6789999999999999999999999987654 


Q ss_pred             CCCCCCccccCCCCcccccccccccCC
Q 013239          414 SYARASSLGAKSSSSVGTLTSNAGALR  440 (447)
Q Consensus       414 ~y~~~~~~~~~~~s~v~~lt~~aG~l~  440 (447)
                      .|+++++|+++|+++|++||++||+|.
T Consensus       320 ~y~~~~~~~~~~~~~v~~~~~~aG~~~  346 (346)
T 1pxz_A          320 IYNSNEAFKVENGNAAPQLTKNAGVVT  346 (346)
T ss_dssp             CCCTTTCCCCCCGGGHHHHTTTCSSCC
T ss_pred             CCCcccccccCCHHHHHHHhhhccCCC
Confidence            599999999999999999999999994
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 447
d1pxza_346 b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark 1e-139
d1pe9a_361 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 1e-84
d1qcxa_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 8e-69
d1bn8a_399 b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [Ta 2e-67
d1idka_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 2e-60
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 2e-39
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 0.001
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

 Score =  401 bits (1031), Expect = e-139
 Identities = 162/345 (46%), Positives = 223/345 (64%), Gaps = 5/345 (1%)

Query: 99  NPIDDCWRCDSRWYLRRKRLADCAIGFGRNAIGGRDGRYYVVSDPGDDDAVNPKPGTLRH 158
           NPID CWR DS W   R +LADCA+GFG + +GG+ G +Y V+   DD+ VNP PGTLR+
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTST-DDNPVNPTPGTLRY 60

Query: 159 AVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAN-GACITIQFITNVIIHG 217
              +++ LWI+F ++M I LK  L +   KTIDGRG +VH+ N G C+ ++ +++VI+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 218 INIHDCKPTGNAMVRSSPS-HYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIM 276
           ++IH C  +    V  S S         DGDAI++   ++ WIDHNSLS+C+DGLID  +
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 277 GSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHV 336
           GST IT+SNN+F +H++VMLLGH D+Y  DK M+VT+A+N FG    QRMPR R+G  HV
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV 240

Query: 337 VNNDYTHWVMYAIGGSANPTINSQGNRYLAPENTFAKEVTKRVDTSTA-VWRGWNWRSEG 395
            NN+Y  W +YAIGGS+NPTI S+GN + AP  ++ KEVTKR+   +      W WRS  
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTR 300

Query: 396 DMLLNGAYFTPSGAG-SGASYARASSLGAKSSSSVGTLTSNAGAL 439
           D  +NGAYF  SG       Y    +   ++ ++   LT NAG +
Sbjct: 301 DAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGVV 345
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Length = 361 Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Length = 399 Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query447
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 100.0
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 100.0
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 100.0
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 100.0
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 100.0
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 100.0
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.13
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.02
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.9
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.9
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.88
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.71
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 97.65
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.57
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.52
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 97.47
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.44
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 97.41
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.33
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.8
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 96.77
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 96.68
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 96.64
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 96.48
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.7
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.7
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 95.55
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 95.34
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 95.13
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 94.07
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 93.93
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 93.86
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 93.84
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 92.75
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 90.81
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=100.00  E-value=1e-96  Score=744.22  Aligned_cols=342  Identities=47%  Similarity=0.867  Sum_probs=311.8

Q ss_pred             CCccccccccCccccccccccccCcccccCccccCCCCeEEEEcCCCCCCCCCCCCcchhhhhcCCCCeEEEEeeceEEE
Q 013239           98 GNPIDDCWRCDSRWYLRRKRLADCAIGFGRNAIGGRDGRYYVVSDPGDDDAVNPKPGTLRHAVIQDRPLWIVFKRDMVIT  177 (447)
Q Consensus        98 ~n~id~cwr~~~~w~~~r~~lA~~A~GFG~~ttGG~gG~vy~VT~~~D~~~~~~~pGtLR~Av~q~~P~~IVF~~~g~I~  177 (447)
                      .||||+||||||||+.+||+||+||+|||++||||+||+||+||+++| ++++|+|||||+|++|++||||||+++|+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~a~Gfg~~ttGG~gG~v~~Vt~l~D-~~~~~g~GsLr~a~~~~~pr~IvF~vsg~I~   79 (346)
T d1pxza_           1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCCcccccCCCCCHHHHHHhhhhccccccCCCcCCCCceEEEecChhh-ccccCCCccHHHHhhCCCCeEEEEeccEEEe
Confidence            499999999999999999999999999999999999999999999977 6788999999999999999999999999999


Q ss_pred             eCceEEecCCcEEEccCceEEEe-cCceEEEeccccEEEEceEEEeccCCCCcccccCC-CCcCCcccCCCCeEEeecCc
Q 013239          178 LKQELIMNSFKTIDGRGVNVHIA-NGACITIQFITNVIIHGINIHDCKPTGNAMVRSSP-SHYGWRTMADGDAISIFGSS  255 (447)
Q Consensus       178 L~~~L~I~SnkTI~G~gA~~~I~-~G~gi~i~~a~NVIIRnL~i~~~~pg~~~~i~~s~-~~~g~r~~~d~DaIsI~gs~  255 (447)
                      |+++|.|+|||||+|||+|++|. .|.+|.+..++|||||||+||++.+...+.+...+ .+.+.+...++|+|+|++++
T Consensus        80 l~~~L~v~sn~TI~G~ga~~~i~~~G~~i~i~~~~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~gDai~i~~s~  159 (346)
T d1pxza_          80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             ccceEEeCCCceEEccCCCceEeeecceEEEecCCEEEEeceEEecCcccCCcccccccccCccccccCCCceeeeecCc
Confidence            99999999999999999999987 35679999999999999999998766544432222 12223345789999999999


Q ss_pred             eEEEEeeEeecCCCCeEEeeeCCceEEEEcceeccCCeeeEecCCCCccCCccceEEEEeeEecCCCcCCCceeccCeEE
Q 013239          256 HIWIDHNSLSNCADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFH  335 (447)
Q Consensus       256 nVWIDHcS~S~~~DGliDi~~gS~~ITISnn~f~~H~k~mLiG~sD~~~~d~~~~VTihhN~F~~~~~qR~Pr~R~G~~H  335 (447)
                      |||||||+|+|+.||+||+++++++||||||+|++|+|++|+|+++....++.++||||||+|.++..+|+|++|+|++|
T Consensus       160 nvwIDH~s~s~~~D~~idi~~~s~~vTis~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~~r~~p~~r~g~~h  239 (346)
T d1pxza_         160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVH  239 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEE
T ss_pred             eEEEECcEeeccccCceeEecCCEEEEEEeeEEccCccccccCCCcccccCCCceEEEEccccCCCcccCCCccccceEE
Confidence            99999999999999999999999999999999999999999999988777788999999999988889999999999999


Q ss_pred             EEcceeeCceeeeeecCCCceEEEeccEEeCCCCccccceeeeccC-CCCcccCCeeeccCceEEeceEEccCCCCCC-C
Q 013239          336 VVNNDYTHWVMYAIGGSANPTINSQGNRYLAPENTFAKEVTKRVDT-STAVWRGWNWRSEGDMLLNGAYFTPSGAGSG-A  413 (447)
Q Consensus       336 vvNN~y~nw~~Yaigg~~~~~I~segN~F~a~~~~~~k~vt~r~~~-~~~~~~~w~w~s~Gd~~~nGa~f~~sg~~~~-~  413 (447)
                      ++||||++|..||++++.++++++|||||++++.+..|+++++... ...+|++|+|++++|+|+||++|.++|.... .
T Consensus       240 v~NN~~~n~~~~~~~~~~~~~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~nga~~~~sg~~~~~~  319 (346)
T d1pxza_         240 VANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETN  319 (346)
T ss_dssp             EESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCC
T ss_pred             EECcEeecCccEEEeccCceEEEEEeeEEECCCCccceeeecccccCCccccccceeeccCceeeccceeccCCCccccc
Confidence            9999999999999999999999999999999999999999988654 3456999999999999999999999987643 4


Q ss_pred             CCCCCCccccCCCCcccccccccccCC
Q 013239          414 SYARASSLGAKSSSSVGTLTSNAGALR  440 (447)
Q Consensus       414 ~y~~~~~~~~~~~s~v~~lt~~aG~l~  440 (447)
                      .|.++++|++.|++.|++|++.||||+
T Consensus       320 ~~~~~~~y~~~~as~V~~v~~~AGal~  346 (346)
T d1pxza_         320 IYNSNEAFKVENGNAAPQLTKNAGVVT  346 (346)
T ss_dssp             CCCTTTCCCCCCGGGHHHHTTTCSSCC
T ss_pred             cccCccccccCCHHHHHhhhccCCCCC
Confidence            688899999999999999999999995
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure