Citrus Sinensis ID: 013256

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------

MSSTLLEVTRAAHEEVERLERLVVKDLQTEPNSNKDRLVQSHRVRNMIDTITDTTERLIEIYADKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRHPSARVAVDASEDYENLLKEEPLVEFSGEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDVFSRPHEIPRKLKMTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWETEGQENGHVPAQHSELDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDKKHFAKGARGKEQNGVAPATQEVGNLKDIALMEAKMKKLCDLLSETIERTIQNVQKKQALTYEEMEAEREEQEETQVDTESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQVFSSLNCYNLLQDLGFLWINVFYEELCLHFKLN

ccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccccccccccccccccccccHHHHHHHHHcccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHccccccccHHHHHHHHHHccccccccccHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccccHHHccccccccccccccccccHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHHHHcccc

*SSTLLEVTRAAHEEVERLERLVVKDL**********LVQSHRVRNMIDTITDTTERLIEIYADKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRH***RVAVDA*EDYENLLKEEPLVEFSGEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDVFSRPHEIPRKLKMTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWE***************LDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLF***********************************NLKDIALMEAKMKKLCDLLSETIERTIQNVQK*******************************IYNPLKLPMGWDGKPIPYWLYKLHGLGQVFSSLNCYNLLQDLGFLWINVFYEELCLHFKLN

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MSSTLLEVTRAAHEEVERLERLVVKDLQTEPNSNKDRLVQSHRVRNMIDTITDTTERLIEIYADKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRHPSARVAVDASEDYENLLKEEPLVEFSGEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDVFSRPHEIPRKLKMTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWETEGQENGHVPAQHSELDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDKKHFAKGARGKEQNGVAPATQEVGNLKDIALMEAKMKKLCDLLSETIERTIQNVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIYNPLKLPMGWDGKPIPYWLYKLHGLGQVFSSLNCYNLLQDLGFLWINVFYEELCLHFKLN

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
Splicing factor 3A subunit 3	Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex.	probable	Q12874
Splicing factor 3A subunit 3	Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex.	probable	Q9D554
Splicing factor 3A subunit 3	Probable subunit of a splicing factor complex required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA (By similarity). Involved in male fertility.	probable	O46106

Prediction of Enzyme Commission Number

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 4DGW, chain A
Confidence level:very confident
Coverage over the Query: 2-62,90-232,246-285,325-373
View the alignment between query and template
View the model in PyMOL