Citrus Sinensis ID: 013256

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------
MSSTLLEVTRAAHEEVERLERLVVKDLQTEPNSNKDRLVQSHRVRNMIDTITDTTERLIEIYADKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRHPSARVAVDASEDYENLLKEEPLVEFSGEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDVFSRPHEIPRKLKMTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWETEGQENGHVPAQHSELDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDKKHFAKGARGKEQNGVAPATQEVGNLKDIALMEAKMKKLCDLLSETIERTIQNVQKKQALTYEEMEAEREEQEETQVDTESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQVFSSLNCYNLLQDLGFLWINVFYEELCLHFKLN
ccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccccccccccccccccHHHHHHHHHcccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHccccccccHHHHHHHHHHccccccccccHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccHHHHHccccccccccccccccHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHHHHcccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcccccccccccHcccccEEcHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHcccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHcHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHcccccEEEEEEcccEEEcccHHHHHHcccEEEEEEEcc
MSSTLLEVTRAAHEEVERLERLVVKdlqtepnsnkdrlVQSHRVRNMIDTITDTTERLIEIYADKDNARKDEIAAlggqtatgtnvFSSFYDRLKEIREyhrrhpsarvaVDASEDYENllkeeplvefsgeeayGRYLDLHELYNQYINSKFGKEIEYSAYldvfsrpheiprklKMTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQgwetegqenghvpaqhseldldYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFltkhtpldkldkkhfakgargkeqngvapatqevgnLKDIALMEAKMKKLCDLLSETIERTIQNVQKKQALTYEEMEAEREeqeetqvdtesddeeqqiynplklpmgwdgkpipywlYKLHGLGQVFSSLNCYNLLQDLGFLWINVFYEELCLHFKLN
msstllevtraaheeverlerlvvkdlqtepnsnkdrlvqshrvrnmidtitdtteRLIEIYADKDNARKDEIAalggqtatgtnvfSSFYDRLKEIREyhrrhpsarvavdasEDYENLLKeeplvefsgEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDvfsrpheiprklkmTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWETEGQENGHVPAQHSELDLDYYSTVEELMEVGSERLKEELAakglksggtlQQRAERLfltkhtpldkldKKHFAKgargkeqngvapatqevgNLKDIALMEAKMKKLCDLLSETIERTIQNVQKKQALTYEEMEAEREEqeetqvdtesddeeQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQVFSSLNCYNLLQDLGFLWINVFYEELCLHFKLN
MSSTLLEVTRAAHeeverlerlvvKDLQTEPNSNKDRLVQSHRVRNMIDTITDTTERLIEIYADKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRHPSARVAVDASEDYENLLKEEPLVEFSGEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDVFSRPHEIPRKLKMTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWETEGQENGHVPAQHSELDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDKKHFAKGARGKEQNGVAPATQEVGNLKDIALMEAKMKKLCDLLSETIERTIQNVQKKQALtyeemeaereeqeetqvdtesddeeqQIYNPLKLPMGWDGKPIPYWLYKLHGLGQVFSSLNCYNLLQDLGFLWINVFYEELCLHFKLN
******************************************RVRNMIDTITDTTERLIEIYADKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRH***RVAVDA*EDYENLLKEEPLVEFSGEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDVFSRPHEIPRKLKMTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWET**************LDLDYYSTVEE*******************************F***********************************NLKDIALMEAKMKKLCDLLSETIERTIQ***********************************IYNPLKLPMGWDGKPIPYWLYKLHGLGQVFSSLNCYNLLQDLGFLWINVFYEELCLHFK**
*SSTLLEVTRAAHEEVERLERLVVKDL**********LVQSHRVRNMIDTITDTTERLIEIYADKDNARK****************FSSFYDRLKEIREYHRRH*********************LVEFSGEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDVFSRPHEIPRKLKMTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWV**************************DYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERL****************************************IALMEAKMKKLCDLLSETIERTIQNVQK************************************KLPMGWDGKPIPYWLYKLHGLGQVFSSLNCYNLLQDLGFLWINVFYEELCLHFKLN
MSSTLLEVTRAAHEEVERLERLVVKDLQTEPNSNKDRLVQSHRVRNMIDTITDTTERLIEIYADKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRHPSARVAVDASEDYENLLKEEPLVEFSGEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDVFSRPHEIPRKLKMTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWETEGQENGHVPAQHSELDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDKKHFAKGARGKEQNGVAPATQEVGNLKDIALMEAKMKKLCDLLSETIERTIQNVQKKQALTY***********************QQIYNPLKLPMGWDGKPIPYWLYKLHGLGQVFSSLNCYNLLQDLGFLWINVFYEELCLHFKLN
**STLLEVTRAAHEEVERLERLVVKDLQTEPNSNKDRLVQSHRVRNMIDTITDTTERLIEIYADKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRHPSARVAVDASEDYENLLKEEPLVEFSGEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDVFSRPHEIPRKLKMTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWE***************LDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDKKHFAK**************QEVGNLKDIALMEAKMKKLCDLLSETIERTIQNVQKKQALTYEEMEAEREE**************QQIYNPLKLPMGWDGKPIPYWLYKLHGLGQVFSSLNCYNLLQDLGFLWINVFYEELCLHFKLN
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MSSTLLEVTRAAHEEVERLERLVVKDLQTEPNSNKDRLVQSHRVRNMIDTITDTTERLIEIYADKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRHPSARVAVDASEDYENLLKEEPLVEFSGEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDVFSRPHEIPRKLKMTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWETEGQENGHVPAQHSELDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDKKHFAKGARGKEQNGVAPATQEVGNLKDIALMEAKMKKLCDLLSETIERTIQNVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIYNPLKLPMGWDGKPIPYWLYKLHGLGQVFSSLNCYNLLQDLGFLWINVFYEELCLHFKLN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query447 2.2.26 [Sep-21-2011]
Q9D554501 Splicing factor 3A subuni yes no 0.901 0.804 0.427 2e-79
Q12874501 Splicing factor 3A subuni yes no 0.901 0.804 0.427 5e-79
O46106503 Splicing factor 3A subuni yes no 0.910 0.809 0.408 7e-73
O59706492 Pre-mRNA-splicing factor yes no 0.865 0.786 0.310 2e-43
Q7T293467 Protein SDE2 homolog OS=D no no 0.149 0.143 0.477 3e-08
Q8K1J5448 Protein SDE2 homolog OS=M no no 0.181 0.180 0.419 4e-08
P19736530 Pre-mRNA-splicing factor yes no 0.219 0.184 0.316 4e-06
Q07G43468 Protein SDE2 homolog OS=X no no 0.161 0.153 0.486 1e-05
Q5BJN8448 Protein SDE2 homolog OS=R no no 0.181 0.180 0.432 0.0003
>sp|Q9D554|SF3A3_MOUSE Splicing factor 3A subunit 3 OS=Mus musculus GN=Sf3a3 PE=2 SV=2 Back     alignment and function desciption
 Score =  296 bits (758), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 183/428 (42%), Positives = 260/428 (60%), Gaps = 25/428 (5%)

Query: 4   TLLEVTRAAHEEVERLERLVVKDLQTEPNSNKDRLVQSHRVRNMIDTITDTTERLIEIYA 63
           T+LE  R  HEE ERL  ++ K++ T+ ++ +D++   HR R M D   + +  L ++Y 
Sbjct: 3   TILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYD 62

Query: 64  DKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRHPSARVAVDASEDYENLLK- 122
           DKD  RK+E+ A+     +G N F+ FY+RLK+I+E+HR+HP+  + V  S ++E LLK 
Sbjct: 63  DKDGLRKEELNAI-----SGPNEFAEFYNRLKQIKEFHRKHPN-EICVPMSVEFEELLKA 116

Query: 123 -EEP------LVEFSGEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDVFSRPHEIPRK 175
            E P      LVEF+ EE YGRYLDLH+ Y +YIN K  ++++Y  YL +F +  +IP++
Sbjct: 117 RENPSEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKE 176

Query: 176 LKMTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWETEGQE 235
            K   +Y+ Y+E LLEYL  +  R +PLQD + +F K+  DFE++W   T  GW  E   
Sbjct: 177 RK-NAEYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQTDFEKKWDNGTFPGWPKETSS 235

Query: 236 NGHVPAQHSELDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPL 295
                  H  LDL  +S+ EEL  +G +RLK  L A GLK GGTL++RA+RLF TK   L
Sbjct: 236 ALTHAGAH--LDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSL 293

Query: 296 DKLDKKHFAKGARGKEQNGVAPATQEVGNLKDIALMEAKMKKLCDLLSETIERTIQNVQK 355
           + LD   FAK  + K   G    T+     KDIA +EA++ +  ++L E  + T +NVQ+
Sbjct: 294 ESLDTSLFAKNPKSK---GTKRDTERN---KDIAFLEAQIYEYVEILGEQRQLTHENVQR 347

Query: 356 KQALTYEEMEAEREEQEETQVDTESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQV 415
           KQA T    E E EE+E+       D+E + IYNP  LP+GWDGKPIPYWLYKLHGL   
Sbjct: 348 KQART--GEEREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNIN 405

Query: 416 FSSLNCYN 423
           ++   C N
Sbjct: 406 YNCEICGN 413
Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex.
Mus musculus (taxid: 10090)
>sp|Q12874|SF3A3_HUMAN Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1 Back     alignment and function description
>sp|O46106|NOI_DROME Splicing factor 3A subunit 3 OS=Drosophila melanogaster GN=noi PE=1 SV=1 Back     alignment and function description
>sp|O59706|SAP61_SCHPO Pre-mRNA-splicing factor sap61 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sap61 PE=1 SV=1 Back     alignment and function description
>sp|Q7T293|SDE2_DANRE Protein SDE2 homolog OS=Danio rerio GN=sde2 PE=2 SV=2 Back     alignment and function description
>sp|Q8K1J5|SDE2_MOUSE Protein SDE2 homolog OS=Mus musculus GN=Sde2 PE=1 SV=1 Back     alignment and function description
>sp|P19736|PRP9_YEAST Pre-mRNA-splicing factor PRP9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP9 PE=1 SV=1 Back     alignment and function description
>sp|Q07G43|SDE2_XENTR Protein SDE2 homolog OS=Xenopus tropicalis GN=sde2 PE=2 SV=1 Back     alignment and function description
>sp|Q5BJN8|SDE2_RAT Protein SDE2 homolog OS=Rattus norvegicus GN=Sde2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query447
388519461429 unknown [Medicago truncatula] 0.939 0.979 0.770 0.0
357463887508 Splicing factor 3a [Medicago truncatula] 0.939 0.826 0.770 0.0
224118264509 predicted protein [Populus trichocarpa] 0.941 0.827 0.758 0.0
356509273509 PREDICTED: splicing factor 3A subunit 3- 0.941 0.827 0.784 1e-180
359490792509 PREDICTED: splicing factor 3A subunit 3- 0.941 0.827 0.768 1e-178
449455942508 PREDICTED: splicing factor 3A subunit 3- 0.939 0.826 0.761 1e-177
356516045509 PREDICTED: splicing factor 3A subunit 3- 0.941 0.827 0.773 1e-177
224135217495 predicted protein [Populus trichocarpa] 0.910 0.822 0.741 1e-174
297810717508 hypothetical protein ARALYDRAFT_487419 [ 0.939 0.826 0.718 1e-169
42567684504 splicing factor 3A subunit 3 [Arabidopsi 0.930 0.825 0.709 1e-164
>gi|388519461|gb|AFK47792.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/423 (77%), Positives = 363/423 (85%), Gaps = 3/423 (0%)

Query: 1   MSSTLLEVTRAAHEEVERLERLVVKDLQTEPNSNKDRLVQSHRVRNMIDTITDTTERLIE 60
           MSSTLLE TRAAHEEVERLER++VKDLQ EP SNKDRL QSHRVRNMI TIT TTERLI+
Sbjct: 1   MSSTLLEATRAAHEEVERLERVIVKDLQNEPTSNKDRLYQSHRVRNMIVTITSTTERLID 60

Query: 61  IYADKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRHPSARVAVDASEDYENL 120
           IY DKDNARKDEIAALGGQTATG N+FS+FYDRLKEIREYHR+HP+ARV VDA++D+E+L
Sbjct: 61  IYDDKDNARKDEIAALGGQTATGINLFSAFYDRLKEIREYHRKHPAARV-VDANDDFEDL 119

Query: 121 LKEEPLVEFSGEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDVFSRPHEIPRKLKMTR 180
           LKEEP +EFSGEEA+GRYLD++ELY QY+NSKFG+ IEYSAYLD+FS   +IPRK+K TR
Sbjct: 120 LKEEPKIEFSGEEAFGRYLDINELYQQYVNSKFGEPIEYSAYLDIFSETDKIPRKMKTTR 179

Query: 181 QYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWETEGQENGHVP 240
           QYREY++ LL+YL  FF RTEPLQDLDRIFSKV  +F E W T  + GWE   QENGHVP
Sbjct: 180 QYREYLKNLLQYLTSFFHRTEPLQDLDRIFSKVTTEFNENWATGRVLGWENVNQENGHVP 239

Query: 241 AQHSELDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDK 300
           AQH+ +DLDYYSTVEELMEVG ERLKE LAA GLK+GGT+QQRAERLFLTKHTPL+ LDK
Sbjct: 240 AQHTAIDLDYYSTVEELMEVGPERLKEALAALGLKTGGTIQQRAERLFLTKHTPLEMLDK 299

Query: 301 KHFAKGARGKEQNGVAPATQEVGNLKDIALMEAKMKKLCDLLSETIERTIQNVQKKQALT 360
           KHFAKGARG E+NGVA A Q+ GNLK+IALMEAKM KLCDLL ETI RT  N+ KKQALT
Sbjct: 300 KHFAKGARGSEKNGVAAAPQD-GNLKEIALMEAKMNKLCDLLDETITRTKDNIVKKQALT 358

Query: 361 YEEMEAEREEQEETQVDTESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQVFSSLN 420
           YEE+EAEREE+E  +     DD EQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQ F    
Sbjct: 359 YEEIEAEREEEETQEDSESEDD-EQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEI 417

Query: 421 CYN 423
           C N
Sbjct: 418 CGN 420

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357463887|ref|XP_003602225.1| Splicing factor 3a [Medicago truncatula] gi|355491273|gb|AES72476.1| Splicing factor 3a [Medicago truncatula] Back     alignment and taxonomy information
>gi|224118264|ref|XP_002317774.1| predicted protein [Populus trichocarpa] gi|222858447|gb|EEE95994.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356509273|ref|XP_003523375.1| PREDICTED: splicing factor 3A subunit 3-like [Glycine max] Back     alignment and taxonomy information
>gi|359490792|ref|XP_002268036.2| PREDICTED: splicing factor 3A subunit 3-like [Vitis vinifera] gi|302144037|emb|CBI23142.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449455942|ref|XP_004145709.1| PREDICTED: splicing factor 3A subunit 3-like [Cucumis sativus] gi|449507630|ref|XP_004163087.1| PREDICTED: LOW QUALITY PROTEIN: splicing factor 3A subunit 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356516045|ref|XP_003526707.1| PREDICTED: splicing factor 3A subunit 3-like [Glycine max] Back     alignment and taxonomy information
>gi|224135217|ref|XP_002322012.1| predicted protein [Populus trichocarpa] gi|222869008|gb|EEF06139.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297810717|ref|XP_002873242.1| hypothetical protein ARALYDRAFT_487419 [Arabidopsis lyrata subsp. lyrata] gi|297319079|gb|EFH49501.1| hypothetical protein ARALYDRAFT_487419 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42567684|ref|NP_196234.3| splicing factor 3A subunit 3 [Arabidopsis thaliana] gi|9759314|dbj|BAB09681.1| splicing factor 3a [Arabidopsis thaliana] gi|14532640|gb|AAK64048.1| putative splicing factor 3a [Arabidopsis thaliana] gi|21281056|gb|AAM44910.1| putative splicing factor 3a protein [Arabidopsis thaliana] gi|332003594|gb|AED90977.1| splicing factor 3A subunit 3 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query447
TAIR|locus:2152855504 ATO "ATROPOS" [Arabidopsis tha 0.930 0.825 0.647 1.1e-140
MGI|MGI:1922312501 Sf3a3 "splicing factor 3a, sub 0.899 0.802 0.403 2.7e-75
UNIPROTKB|Q4KLI7501 Sf3a3 "Protein Sf3a3" [Rattus 0.899 0.802 0.403 2.7e-75
UNIPROTKB|Q12874501 SF3A3 "Splicing factor 3A subu 0.899 0.802 0.403 3.5e-75
UNIPROTKB|E2QXU5501 SF3A3 "Uncharacterized protein 0.899 0.802 0.400 1.5e-74
UNIPROTKB|F1SV40501 SF3A3 "Uncharacterized protein 0.899 0.802 0.400 1.5e-74
UNIPROTKB|Q3SWY7501 SF3A3 "Splicing factor 3a, sub 0.899 0.802 0.400 2.5e-74
UNIPROTKB|Q5F387501 SF3A3 "Uncharacterized protein 0.899 0.802 0.393 2.2e-73
ZFIN|ZDB-GENE-040908-1501 sf3a3 "splicing factor 3a, sub 0.899 0.802 0.389 3.2e-72
FB|FBgn0014366503 noi "noisette" [Drosophila mel 0.908 0.807 0.384 1.1e-66
TAIR|locus:2152855 ATO "ATROPOS" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1376 (489.4 bits), Expect = 1.1e-140, P = 1.1e-140
 Identities = 274/423 (64%), Positives = 319/423 (75%)

Query:     1 MSSTLLEVTRAAHXXXXXXXXXXXKDLQTEPNSNKDRLVQSHRVRNMIDTITDTTERLIE 60
             MSSTLLE TR+ H           +DLQ EP S+KDRLVQ HRVR+MI++I  TTE+L+E
Sbjct:     1 MSSTLLEQTRSNHEEVERLERLVVEDLQKEPPSSKDRLVQGHRVRHMIESIMLTTEKLVE 60

Query:    61 IYADKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRHPSARVAVDASEDYENL 120
              Y DKD A  DEIAALGGQTATGTNVFS FYDRLKEIREYH+RHPS R+ VDA+EDYE  
Sbjct:    61 TYEDKDGAWDDEIAALGGQTATGTNVFSEFYDRLKEIREYHKRHPSGRL-VDANEDYEAR 119

Query:   121 LKEEPLVEFSGEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDVFSRPHEIPRKLKMTR 180
             LKEEP++ FSGEE  GRYLDLH++YNQYINSKFG+ +EYSAYLDVFS+P +IPRKLK++R
Sbjct:   120 LKEEPIIAFSGEEGNGRYLDLHDMYNQYINSKFGERVEYSAYLDVFSQPEKIPRKLKLSR 179

Query:   181 QYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWETEGQENGHVP 240
             QY +Y+E LLEYL+YFFQRTEPLQDLDRI SKV +DFEEQ+    +     EG +N  +P
Sbjct:   180 QYMKYMEALLEYLVYFFQRTEPLQDLDRILSKVCSDFEEQYADGIV-----EGLDNELIP 234

Query:   241 AQHSELDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDK 300
             +QH+ +DLDYYSTVEEL++VG E+LKE L A GLK GGT QQRAERLFLTKHTPL+KLDK
Sbjct:   235 SQHTVIDLDYYSTVEELVDVGPEKLKEALGALGLKVGGTPQQRAERLFLTKHTPLEKLDK 294

Query:   301 KHFAKGARGKEQNGVAPATQEVGNLKDIALMEAKMKKLCDLLSETIERTIQNVQKKQALX 360
             KHFA+     +QNG A +T E  N K+IAL EAK+KKLC+LL ETIERT QN+ KKQ+L 
Sbjct:   295 KHFARPPHNGKQNGDAKSTHESENAKEIALTEAKVKKLCNLLDETIERTKQNIVKKQSLT 354

Query:   361 XXXXXXXXXXXXXXXXXXXXXXXXXQIYNPLKLPMGWDGKPIPYWLYKLHGLGQVFSSLN 420
                                       IYNPLKLP+GWDGKPIPYWLYKLHGLGQ F    
Sbjct:   355 YEEMEGEREGEEANTELESDDEDGL-IYNPLKLPIGWDGKPIPYWLYKLHGLGQEFKCEI 413

Query:   421 CYN 423
             C N
Sbjct:   414 CGN 416
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0045694 "regulation of embryo sac egg cell differentiation" evidence=IMP
GO:0000741 "karyogamy" evidence=RCA
GO:0006312 "mitotic recombination" evidence=RCA
GO:0006406 "mRNA export from nucleus" evidence=RCA
GO:0009560 "embryo sac egg cell differentiation" evidence=RCA
GO:0009561 "megagametogenesis" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009933 "meristem structural organization" evidence=RCA
GO:0010074 "maintenance of meristem identity" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010182 "sugar mediated signaling pathway" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0016571 "histone methylation" evidence=RCA
GO:0016579 "protein deubiquitination" evidence=RCA
GO:0019915 "lipid storage" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0050826 "response to freezing" evidence=RCA
MGI|MGI:1922312 Sf3a3 "splicing factor 3a, subunit 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q4KLI7 Sf3a3 "Protein Sf3a3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q12874 SF3A3 "Splicing factor 3A subunit 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QXU5 SF3A3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SV40 SF3A3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SWY7 SF3A3 "Splicing factor 3a, subunit 3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F387 SF3A3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040908-1 sf3a3 "splicing factor 3a, subunit 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0014366 noi "noisette" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q12874SF3A3_HUMANNo assigned EC number0.42750.90150.8043yesno
O46106NOI_DROMENo assigned EC number0.40880.91050.8091yesno
Q9D554SF3A3_MOUSENo assigned EC number0.42750.90150.8043yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query447
pfam11931187 pfam11931, DUF3449, Domain of unknown function (DU 3e-34
COG5188470 COG5188, PRP9, Splicing factor 3a, subunit 3 [RNA 2e-32
pfam1329760 pfam13297, Telomere_Sde2_2, Telomere stability C-t 3e-27
pfam1210827 pfam12108, SF3a60_bindingd, Splicing factor SF3a60 9e-08
>gnl|CDD|221323 pfam11931, DUF3449, Domain of unknown function (DUF3449) Back     alignment and domain information 
 Score =  125 bits (317), Expect = 3e-34
 Identities = 52/94 (55%), Positives = 66/94 (70%), Gaps = 5/94 (5%)

Query: 329 ALMEAKMKKLCDLLSETIERTIQNVQKKQALTYEEMEAERE-----EQEETQVDTESDDE 383
           A +E K++KL +LL +  E TI+NV++KQALT EE +A  +       E+   D   DDE
Sbjct: 1   ARLEFKIEKLAELLKKEREDTIENVERKQALTEEERQASADESSEDASEDGSDDDSDDDE 60

Query: 384 EQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQVFS 417
           E+ IYNPL LP+GWDGKPIPYWLYKLHGLG+ F 
Sbjct: 61  EEPIYNPLNLPLGWDGKPIPYWLYKLHGLGKEFK 94

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 181 to 207 amino acids in length. This domain has two conserved sequence motifs: PIP and CEICG. The domain carries a zinc-finger domain of the C2H2-type. Length = 187
>gnl|CDD|227515 COG5188, PRP9, Splicing factor 3a, subunit 3 [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|205477 pfam13297, Telomere_Sde2_2, Telomere stability C-terminal Back     alignment and domain information
>gnl|CDD|192937 pfam12108, SF3a60_bindingd, Splicing factor SF3a60 binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 447
KOG2636497 consensus Splicing factor 3a, subunit 3 [RNA proce 100.0
COG5188470 PRP9 Splicing factor 3a, subunit 3 [RNA processing 100.0
PF11931196 DUF3449: Domain of unknown function (DUF3449); Int 100.0
PF1329760 Telomere_Sde2_2: Telomere stability C-terminal 99.59
PF1210828 SF3a60_bindingd: Splicing factor SF3a60 binding do 98.92
KOG2827322 consensus Uncharacterized conserved protein [Funct 98.54
PF1217127 zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi 94.57
PF1287425 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG 90.27
PF1287425 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG 88.03
smart0045135 ZnF_U1 U1-like zinc finger. Family of C2H2-type zi 87.65
PF0639736 Desulfoferrod_N: Desulfoferrodoxin, N-terminal dom 86.29
KOG4727193 consensus U1-like Zn-finger protein [General funct 83.63
>KOG2636 consensus Splicing factor 3a, subunit 3 [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-120  Score=917.98  Aligned_cols=421  Identities=47%  Similarity=0.736  Sum_probs=380.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHccCCCCC
Q 013256            3 STLLEVTRAAHEEVERLERLVVKDLQTEPNSNKDRLVQSHRVRNMIDTITDTTERLIEIYADKDNARKDEIAALGGQTAT   82 (447)
Q Consensus         3 ~~~LE~~R~~hEeiErlE~ai~~~l~~~p~t~k~~l~q~h~i~~~ld~~~~~~~~L~~~y~D~dg~r~~Ei~~l~g~~~~   82 (447)
                      +|+||+||++|||+|||+++||++++++|.+.|++|.+.|+|+.|++++.+.+.+|+++|+|+||+|+.||++|+|    
T Consensus         1 etlLEt~R~lhEE~ERl~~~ive~~~~~p~~~k~ri~~~hrv~~~~~~~~~ss~~l~~~yedkdg~r~~e~~~l~g----   76 (497)
T KOG2636|consen    1 ETLLETQRRLHEEMERLENAIVEREQANPPGKKDRINSEHRVRSFLERYRSSSIKLRKLYEDKDGLRKREIAALSG----   76 (497)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhHHhhHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHhcC----
Confidence            4799999999999999999999999999999999999999999999999999999999999999999999999998    


Q ss_pred             CCchHHHHHHHHHHHHHhhhhCCCCccccCchhhHHh----hhcc----CCCCcccccccCccccchHHHHHHHhcCCCC
Q 013256           83 GTNVFSSFYDRLKEIREYHRRHPSARVAVDASEDYEN----LLKE----EPLVEFSGEEAYGRYLDLHELYNQYINSKFG  154 (447)
Q Consensus        83 ~~~~f~~Fy~rL~~Ike~hr~~p~~~~~~~~~~~~~~----~~~~----~~~~~Fs~EE~yGryLDL~~~y~~ylNl~~~  154 (447)
                       +|+|++||++|++|++||+++|+. ++++....+..    ...+    .+.+.|||+|+||||||||++|.+||||+.+
T Consensus        77 -~n~f~EfY~rLk~I~~~hk~~p~e-~~~p~~v~~~~~~e~~~~~~~~~~~l~~Fs~ee~yGrfldL~d~y~kyinl~~~  154 (497)
T KOG2636|consen   77 -PNDFAEFYKRLKEINEFHKKHPDE-KDEPKSVRFLELYEARLSPEDENEVLVEFSGEEGYGRFLDLHDCYRKYINLKNV  154 (497)
T ss_pred             -chhHHHHHHHHHHHhHHHhcCccc-cccchhHHHHHHHHhhcCccccchhhHhhcccccccccccHHHHHHHHhhhhhh
Confidence             799999999999999999999986 33454444433    3333    2457899999999999999999999999999


Q ss_pred             CccchhHHHhhhcCCCCCcccccchhhHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhCCCCCCcccCc
Q 013256          155 KEIEYSAYLDVFSRPHEIPRKLKMTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWETEGQ  234 (447)
Q Consensus       155 ~~i~Yl~YL~~f~~f~~ip~~~K~~~~Y~~YL~~L~~YL~~F~~R~~PL~d~~~~~~~~~~~Fe~~W~~g~~~gW~~~~~  234 (447)
                      .+++|++||.+|++|.+||+ .+++..|+.||+.|.+||.+|+.|++||.|++++++.+.++|+.+|.+|.+|||....+
T Consensus       155 ~r~~Y~~yL~~fd~~~~ip~-~~k~~~Y~~Yi~~L~eYL~~F~~r~~Pl~d~~~ll~~~~~~f~~~~~aG~lpg~~~~et  233 (497)
T KOG2636|consen  155 ERVDYLEYLKNFDQLDDIPK-EKKNREYLNYIEELNEYLVSFIDRTEPLLDLDKLLAKVPKEFERAWAAGTLPGWKYKET  233 (497)
T ss_pred             hhhhHHHHHHHHhhhcccch-hhhhHHHHHHHHHHHHHHHHHHHhcccchhhHhHhcchhhHHHHHHHhCCCCCcccccc
Confidence            99999999999999999999 66699999999999999999999999999999999999999999999999999995432


Q ss_pred             CCCCCCCCCCccCccccchHHHHHhhchhhhhHHHHhcccCCCCchHHHHHHhhhhcCCCccchhhhhhhccCCCCCCCC
Q 013256          235 ENGHVPAQHSELDLDYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDKKHFAKGARGKEQNG  314 (447)
Q Consensus       235 ~~~~~~~~~~~~~~~~c~sceklf~~g~~~lk~~v~~~hLk~kkh~K~ra~rLf~~k~~~~e~~~~~~~ak~~~~~~~~~  314 (447)
                      ..+      ...++...+++++++++||+||++++.+.+++|||+..+||.|+|+|++++++.+++++|++..+.++   
T Consensus       234 ~~~------~~~dl~~~~s~Eel~~~g~erlk~al~alglk~gGt~~~ra~rlf~Tk~~~l~~L~~~~~~kn~s~~~---  304 (497)
T KOG2636|consen  234 FSA------KALDLSGASSVEELYCLGCERLKSALTALGLKCGGTLHERAQRLFSTKSKSLSHLDTKLFAKNPSKKG---  304 (497)
T ss_pred             ccc------cccccchhhHHHHHHhhchhHHHHHHHHHHHhcCCeecHHHHhhhhhcCcchhhhhhhhhccCcccch---
Confidence            221      12678899999999999999999999999999999999999999999999999999999998766541   


Q ss_pred             CCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHhhhhhhcCCCCchhhhhhcCCCCCC
Q 013256          315 VAPATQEVGNLKDIALMEAKMKKLCDLLSETIERTIQNVQKKQALTYEEMEAEREEQEETQVDTESDDEEQQIYNPLKLP  394 (447)
Q Consensus       315 ~~~~~~~~~~~k~ia~~E~~I~~l~e~L~~~~~~T~~nveRKqa~T~~Ere~E~e~~~~~~~~~e~~dee~~iyNPlnLP  394 (447)
                         ......+.++||+.|++|.+++.+|+++|.+|++||.|||++|+.|++.|.++ +.+..+++++|+++.||||+|||
T Consensus       305 ---~~~~~~~~keia~tEa~v~k~~~iL~eeR~~t~env~rKq~~ta~e~E~E~~e-q~~~~~e~~~de~~~~ynp~~lP  380 (497)
T KOG2636|consen  305 ---HRREKERNKEIARTEALVKKLLAILAEERKATRENVVRKQARTAEEREEEEEE-QSDSDEESDDDEEELIYNPKNLP  380 (497)
T ss_pred             ---hhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhh-hhccccccccchhhccCCcccCC
Confidence               23345668999999999999999999999999999999999999999877765 33344445566678999999999


Q ss_pred             CCCCCCCchhHHHHHhcCCceeeeeeccCcccchhhhHHHhhhhhhhhh
Q 013256          395 MGWDGKPIPYWLYKLHGLGQVFSSLNCYNLLQDLGFLWINVFYEELCLH  443 (447)
Q Consensus       395 LGwDGkPIPyWLYKLhGL~~ey~CEICGN~~Y~Gr~~~~~~f~~~~~~~  443 (447)
                      |||||||||||||||||||++|+||||||+||||||+|+|||.||--.|
T Consensus       381 LGwDGkPiPyWLyKLHGL~~ey~CEICGNy~Y~GrkaF~RHF~EwRH~h  429 (497)
T KOG2636|consen  381 LGWDGKPIPYWLYKLHGLDIEYNCEICGNYVYKGRKAFDRHFNEWRHAH  429 (497)
T ss_pred             CCCCCCcCchHHHhhcCCCcccceeeccCccccCcHHHHHHhHHHHHhh
Confidence            9999999999999999999999999999999999999999999996433

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification] Back     alignment and domain information
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF13297 Telomere_Sde2_2: Telomere stability C-terminal Back     alignment and domain information
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes Back     alignment and domain information
>KOG2827 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length Back     alignment and domain information
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A Back     alignment and domain information
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A Back     alignment and domain information
>smart00451 ZnF_U1 U1-like zinc finger Back     alignment and domain information
>PF06397 Desulfoferrod_N: Desulfoferrodoxin, N-terminal domain; InterPro: IPR004462 This domain is found as essentially the full length of desulforedoxin, a 37-residue homodimeric non-haem iron protein Back     alignment and domain information
>KOG4727 consensus U1-like Zn-finger protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query447
4dgw_A402 PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A 1e-57
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
2dt7_A38 Splicing factor 3A subunit 3; structure genomics, 3e-05
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae} Length = 402 Back     alignment and structure
 Score =  194 bits (493), Expect = 1e-57
 Identities = 65/435 (14%), Positives = 128/435 (29%), Gaps = 110/435 (25%)

Query: 1   MSSTLLEVTRAAHEEVERLERLVVKDLQTEPN---------------------------- 32
           +   LLE  R+  EE+E +E  + + +Q  P                             
Sbjct: 12  LEMNLLETRRSLLEEMEIIENAIAERIQRNPELYYHYIQESSKVFPDTKLPRSSLIAENK 71

Query: 33  ---------SNKDRLVQSHRVRNMIDTITDTTERLIEIYADKDNARKDEI-----AALGG 78
                      K  ++Q H +   +    +  +   +I   ++    D+        L  
Sbjct: 72  IYKFKKVKRKRKQIILQQHEINIFLRDYQEKQQTFNKINRPEETQEDDKDLPNFERKLQQ 131

Query: 79  QTATGTNVFSSFYDRLKEIREYHRRHPSARVAVDASEDYENLLKEEPL-VEFSGEEAYGR 137
                 N   +F   +   ++ +    S+      +    +  ++  L   F+ +E YG 
Sbjct: 132 LEKELKNEDENFELDINSKKDKYALFSSSSDPSRRTNILSDRARDLDLNEIFTRDEQYGE 191

Query: 138 YLDLHELYNQYINSKFGKEIEYSAYLDVF------SRPHEIPRKLKMTRQYREYIEKLLE 191
           Y++L + ++ ++N     +     +LD+        +    P   +   +Y  ++ KL +
Sbjct: 192 YMELEQFHSLWLNVIKRGDCSLLQFLDILELFLDDEKYLLTPPMDRKNDRYMAFLLKLSK 251

Query: 192 YLIYFFQRTEPLQDLDRIFSKVVADFEEQWVTSTLQGWETEGQENGHVPAQHSELDLDYY 251
           Y+  FF ++  L D   + + + +DFE  +   +L+                        
Sbjct: 252 YVETFFFKSYALLDAAAVENLIKSDFEHSYCRGSLRSEA--------------------- 290

Query: 252 STVEELMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDKKHFAKGARGKE 311
                                     G       R F T       L  K   K     E
Sbjct: 291 -------------------------KGIYCPFCSRWFKTSSVFESHLVGKIHKK----NE 321

Query: 312 QNGVAPATQEVGNLKDIALMEAKMKKLCDLLSETIERTIQNVQKKQALTYEEMEAEREEQ 371
                    E         +   +K L D  S T       V++K A T  E  AE +  
Sbjct: 322 SKRRNFVYSE-------YKLHRYLKYLNDEFSRTRS----FVERKLAFTANERMAEMDIL 370

Query: 372 EETQVDTESDDEEQQ 386
            +       D  E++
Sbjct: 371 TQKYEAPAYDSTEKE 385
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 38 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query447
4dgw_A402 PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A 100.0
2dt7_A38 Splicing factor 3A subunit 3; structure genomics, 98.96
1zr9_A124 Zinc finger protein 593; DNA binding, structural g 97.99
1zu1_A127 DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr 81.27
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=8.7e-76  Score=602.41  Aligned_cols=295  Identities=19%  Similarity=0.298  Sum_probs=250.7

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHhhCCC-------------------------------------ChhHHHHHHHH
Q 013256            1 MSSTLLEVTRAAHEEVERLERLVVKDLQTEPN-------------------------------------SNKDRLVQSHR   43 (447)
Q Consensus         1 Ms~~~LE~~R~~hEeiErlE~ai~~~l~~~p~-------------------------------------t~k~~l~q~h~   43 (447)
                      |+  +||+||++||||||||+|||+||+++|.                                     |+|++|+|||+
T Consensus        14 M~--~LE~qR~~hEElEriE~ais~r~~rnP~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~kk~krt~k~~l~qqHe   91 (402)
T 4dgw_A           14 MN--LLETRRSLLEEMEIIENAIAERIQRNPELYYHYIQESSKVFPDTKLPRSSLIAENKIYKFKKVKRKRKQIILQQHE   91 (402)
T ss_dssp             CC--HHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHTTSTTCCCCCHHHHHHTBSSSCBCCCCCHHHHHHHHHH
T ss_pred             eh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchhhccccccccccccccccchhhhhccccccHHHHHHHHHH
Confidence            55  9999999999999999999999999998                                     79999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcccchhhHHHHHHccCCCCCCCchHHHHHHHHHHHHHhhhhCCCC---ccccCchhhHHhh
Q 013256           44 VRNMIDTITDTTERLIEIYADKDNARKDEIAALGGQTATGTNVFSSFYDRLKEIREYHRRHPSA---RVAVDASEDYENL  120 (447)
Q Consensus        44 i~~~ld~~~~~~~~L~~~y~D~dg~r~~Ei~~l~g~~~~~~~~f~~Fy~rL~~Ike~hr~~p~~---~~~~~~~~~~~~~  120 (447)
                      |+.|||+|++++++|+++|+|      +||.  ++     +++|++||++|++|++||+++|+.   ++ ......|.+.
T Consensus        92 i~~fld~~~~~sk~L~~~y~d------~ei~--~~-----~~~f~~Fy~~L~~Ike~~~~~~~~~~~pi-~~~~~~y~~~  157 (402)
T 4dgw_A           92 INIFLRDYQEKQQTFNKINRP------EETQ--ED-----DKDLPNFERKLQQLEKELKNEDENFELDI-NSKKDKYALF  157 (402)
T ss_dssp             HHHHHHHHHHHHHHHHHHC---------------------------CHHHHHHHHHHTTSSCCCCCCCC-CSHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhhH------Hhhc--CC-----CchHHHHHHHHHHHHHhhhccccccccch-hhHHHHHHhh
Confidence            999999999999999999966      6664  23     588999999999999999996553   22 2333344432


Q ss_pred             hc---------------cC--CCCcccccccCccccchHHHHHHHhcCCCCCccchhHHHhhhcCCCCC------ccccc
Q 013256          121 LK---------------EE--PLVEFSGEEAYGRYLDLHELYNQYINSKFGKEIEYSAYLDVFSRPHEI------PRKLK  177 (447)
Q Consensus       121 ~~---------------~~--~~~~Fs~EE~yGryLDL~~~y~~ylNl~~~~~i~Yl~YL~~f~~f~~i------p~~~K  177 (447)
                      ..               ..  +++.|||||+||||||||.||.+||||+++++|+|++||++|++|.+|      |+++|
T Consensus       158 ~~~~~~~k~~~iLS~~~~~l~i~~~FSgEE~yGryLDL~~~y~~ylNl~~~~~l~Yl~YL~~F~~f~di~~~~~~p~~~k  237 (402)
T 4dgw_A          158 SSSSDPSRRTNILSDRARDLDLNEIFTRDEQYGEYMELEQFHSLWLNVIKRGDCSLLQFLDILELFLDDEKYLLTPPMDR  237 (402)
T ss_dssp             STTCSSSSSSCCSCGGGTTCCGGGTSCTTTGGGTCCCCHHHHHHHHHHHTSSCCCHHHHHHHHHGGGSSSHHHHSCSSCT
T ss_pred             ccccccccccccccchhcccccccccCcchhcCceecHHHHHHHHhCcCccccCcHHHHHHHHHHhccchhcccCChhhh
Confidence            21               11  134699999999999999999999999888999999999999999998      77789


Q ss_pred             chhhHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH-HHhhCCCCCCcccCcCCCCCCCCCCccCccccchHHH
Q 013256          178 MTRQYREYIEKLLEYLIYFFQRTEPLQDLDRIFSKVVADFEE-QWVTSTLQGWETEGQENGHVPAQHSELDLDYYSTVEE  256 (447)
Q Consensus       178 ~~~~Y~~YL~~L~~YL~~F~~R~~PL~d~~~~~~~~~~~Fe~-~W~~g~~~gW~~~~~~~~~~~~~~~~~~~~~c~scek  256 (447)
                      .+.+|++||++|++||++||.|++||+|+++++.+++++|++ +|++    ||+..             ..++||.+|+|
T Consensus       238 ~~~~Y~~YL~~L~~YL~sF~~Rt~PL~dld~~~~~~~~eFE~~~w~~----~~~~~-------------~~~l~C~~c~K  300 (402)
T 4dgw_A          238 KNDRYMAFLLKLSKYVETFFFKSYALLDAAAVENLIKSDFEHSYCRG----SLRSE-------------AKGIYCPFCSR  300 (402)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTGGGT----CCEET-------------TTEECBTTTTB
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHhhc----CCcCC-------------CcCeeehhhhh
Confidence            899999999999999999999999999999999999999999 9995    47531             13499999999


Q ss_pred             HHhhchhhhhHHHHhcccCCCCchHHHHHHhhhhcCCCccchhhhhhhccCCCCCCCCCCCcccccchhhHHHHHHHHHH
Q 013256          257 LMEVGSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDKKHFAKGARGKEQNGVAPATQEVGNLKDIALMEAKMK  336 (447)
Q Consensus       257 lf~~g~~~lk~~v~~~hLk~kkh~K~ra~rLf~~k~~~~e~~~~~~~ak~~~~~~~~~~~~~~~~~~~~k~ia~~E~~I~  336 (447)
                      +|+      +++||.+||+||+|+|+.++                                       .|.||++|++|+
T Consensus       301 ~Fs------~~~v~~~hL~GKkh~K~~~~---------------------------------------~k~iA~~E~~I~  335 (402)
T 4dgw_A          301 WFK------TSSVFESHLVGKIHKKNESK---------------------------------------RRNFVYSEYKLH  335 (402)
T ss_dssp             CBS------SHHHHHTTSSSHHHHHHHHH---------------------------------------SHHHHHHHHHHH
T ss_pred             hhc------cccccHHHhcccccchhHHH---------------------------------------HHHHHHHHHHHH
Confidence            999      99999999999999986432                                       478999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHhhhh
Q 013256          337 KLCDLLSETIERTIQNVQKKQALTYEEMEAEREEQEE  373 (447)
Q Consensus       337 ~l~e~L~~~~~~T~~nveRKqa~T~~Ere~E~e~~~~  373 (447)
                      +|+++|+++|++|++|||||||||++||++|++.+.+
T Consensus       336 ~l~~~L~~~~~~Tk~nVERKqa~T~~Ere~E~e~l~~  372 (402)
T 4dgw_A          336 RYLKYLNDEFSRTRSFVERKLAFTANERMAEMDILTQ  372 (402)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988644
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4 Back     alignment and structure
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query447
d1zr9a167 Zinc finger protein 593, ZNF593 {Human (Homo sapie 94.84
d1dxga_36 Desulforedoxin {Desulfovibrio gigas [TaxId: 879]} 93.67
d1dfxa236 Desulfoferrodoxin N-terminal domain {Desulfovibrio 92.74
d1vzia237 Desulfoferrodoxin N-terminal domain {Desulfoarculu 92.57
d2csha244 Zinc finger protein 297b {Human (Homo sapiens) [Ta 85.56
d1a1ia328 ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} 84.11
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.84  E-value=0.0013  Score=49.41  Aligned_cols=29  Identities=3%  Similarity=-0.056  Sum_probs=27.1

Q ss_pred             cccchHHHHHhhchhhhhHHHHhcccCCCCchHHH
Q 013256          249 DYYSTVEELMEVGSERLKEELAAKGLKSGGTLQQR  283 (447)
Q Consensus       249 ~~c~sceklf~~g~~~lk~~v~~~hLk~kkh~K~r  283 (447)
                      .||..|+|.|.      +++.+..|.++|+|++.-
T Consensus        16 fYCv~C~K~F~------se~~l~~H~ksKkHKrrv   44 (67)
T d1zr9a1          16 HRCLACARYFI------DSTNLKTHFRSKDHKKRL   44 (67)
T ss_dssp             SEETTTTEECS------SHHHHHHHTTCHHHHHHH
T ss_pred             EecccccCccC------CHHHHHHHHcccHHHHHH
Confidence            79999999999      999999999999998843
>d1dxga_ g.41.5.2 (A:) Desulforedoxin {Desulfovibrio gigas [TaxId: 879]} Back     information, alignment and structure
>d1dfxa2 g.41.5.2 (A:1-36) Desulfoferrodoxin N-terminal domain {Desulfovibrio desulfuricans [TaxId: 876]} Back     information, alignment and structure
>d1vzia2 g.41.5.2 (A:1-37) Desulfoferrodoxin N-terminal domain {Desulfoarculus baarsii (Desulfovibrio baarsii) [TaxId: 887]} Back     information, alignment and structure
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure