Citrus Sinensis ID: 013300

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440------
Protein Sequence
MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVENGEDKNQTTNSQDKVSGVSGELNLLNTELTAKHGTTAALNEQKPTSVTAQAYHLSEIQGSSIPSTVNNNRSNFYTHRFASSNQESSSITNSQPSDFVGHFPLQQLNCASNARLSTAASNSPLWFMQTSKSFDINSQFSSNAMPTILPPVSSSSLFSAPMSYKTSVTLPSDNHSIPSFTVNGSRYWEAGGASNSNSVSSSSTELQSTSSFLESSIFPWGLADCSSSEKEGQINLIDSHPDDVKWPEYFQTPSLLMAAALQNQTSQSLYNEIKSETHILTDSSSGIWPQNQQQPLQNSDICAKEIQRLTATYGHI
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccHHHHHHHHcccccccHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccHHcccccccccHHHHHHHHHHHHHcccccccHccHHcccHccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHcccHHHHccccccccccccHHHccccccccccccccHcccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccHccccccccccHHHcccHHHHcccHHHHHHHHHccccccHHHHccccccEccccccccccccccccccccHcccHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mgrhsccykqklrkglwspeeDEKLLRHITKyghgcwssvpkqaglqrcgksCRLRWINylrpdlkrgtfsqQEENLIIELHAVLGNRWSQiaaqlpgrtdneIKNLWNSCLKKklrqrgidpvthkplsevengedknqttnsqdkvsgvsgeLNLLNTELTAkhgttaalneqkptsvtAQAYHLseiqgssipstvnnnrsnfythrfassnqesssitnsqpsdfvghfplqqlncasnarlstaasnsplwfmqtsksfdinsqfssnamptilppvsssslfsapmsyktsvtlpsdnhsipsftvngsryweaggasnsnsvsssstelqstssflessifpwgladcsssekegqinlidshpddvkwpeyfqtPSLLMAAALQNQTSQSLYNEIKSethiltdsssgiwpqnqqqplqnsdICAKEIQRLTATYGHI
Flexible Loop (DISEMBL)
mgrhsccykqklrkglwspeEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAqlpgrtdneiKNLWNSCLKkklrqrgidpvthkplsevengedknqttnsqdkvsgvSGELNLLNTELTAKHGttaalneqkpTSVTAQAYHLSEiqgssipstvnNNRSNFYTHRFASSNQESSSITNSQPSDFVGHFPLQQLNCASNARLSTAASNSPLWFMQTSKSFDINSQFSSNAMPTILPPVSSSSLFSAPMSYKTsvtlpsdnhsIPSFTVNGSRYWEAGGASNSNSVSSSSTELQSTSSFLESSIFPWGLADCSSSEKEGQINLIDSHPDDVKWPEYFQTPSLLMAAALQNQTSQSLYNEIKSETHILTDSSSGIWPQNQQQPLQNSDICAKEIQRLTATYGHI
Low Complexity Region (SEG)
MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVENGEDKNQTTNSQDKVSGVSGELNLLNTELTAKHGTTAALNEQKPTSVTAQAYHLSEIQGSSIPSTVNNNRSNFYTHRFAssnqesssitnsqPSDFVGHFPLQQLNCASNARLSTAASNSPLWFMQTSKSFDINSQFSSNAMPTILPPVSSSSLFSAPMSYKTSVTLPSDNHSIPSFTVNGSRYWEAGGAsnsnsvsssstelqstssflessIFPWGLADCSSSEKEGQINLIDSHPDDVKWPEYFQTPSLLMAAALQNQTSQSLYNEIKSETHILTDSSSGIWPQNQQQPLQNSDICAKEIQRLTATYGHI
Disordered region (IsUnstruct)
*****CCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL*****************************************************************************************************************VGHFPLQQLNCA*************LWF****************************************************************************************SIFPWGLADC********INLIDSHPDDVKWPEYFQTPSLLMAAAL*******************************************************
Disordered Region (DISOPRED)
*GRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKK*************************************************************************************************************************************************************************************************************************************SSIFPWGLADCSSS*************DDVKWPEYFQTPSLLM****************KSETHILTDSS****************ICAKEIQRLTATYG*I
Disordered Region (DISEMBL)
MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSE*******************VSGELNLLNTELTAKHGTTAALNEQKPTSVTAQAYHLSEIQGSSIPSTVNNNRSNFYTHRFA***********SQPSDFVGHFPLQQLNCASNARLSTAASNSPLWFMQTSKSFDINSQFSSNAMPTILPPVSSSSLFSAPMSYKTSVTLPSDNHSIPSFTVNGSRYWEAG********************FLESSIFPWGLADCSSSEKEGQINLIDSHPDDVKWPEYFQTPSLLMAAALQNQTSQSLYNEIKSETHILTDSSSGIWPQNQQQPLQNSDICAKEIQRLTATYGHI
Disordered Region (DISPRO)
***HSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLS**************************************************************************N***HR*******SSSITNSQPSDFVGHFPLQQLNCASNARLSTAASNSPLWFMQTSKSFDINSQFSSNAMPTILPPVSSSSLFSAPMSYKTSVTLPSDNHSIPSFTVNGSRYWEAG***********************SSIFPWGLADCSSSEKEGQINLIDSHPDDVKWPEYFQTPSLLMAAALQNQTSQSLYNEIKSETHILTDSSSGIWPQN*Q*PLQNSDICAKEIQRLTATYGHI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVENGEDKNQTTNSQDKVSGVSGELNLLNTELTAKHGTTAALNEQKPTSVTAQAYHLSEIQGSSIPSTVNNNRSNFYTHRFASSNQESSSITNSQPSDFVGHFPLQQLNCASNARLSTAASNSPLWFMQTSKSFDINSQFSSNAMPTILPPVSSSSLFSAPMSYKTSVTLPSDNHSIPSFTVNGSRYWEAGGASNSNSVSSSSTELQSTSSFLESSIFPWGLADCSSSEKEGQINLIDSHPDDVKWPEYFQTPSLLMAAALQNQTSQSLYNEIKSETHILTDSSSGIWPQNQQQPLQNSDICAKEIQRLTATYGHI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	446	2.2.26 [Sep-21-2011]
Q8LPH6	352	Transcription factor MYB8	no	no	0.289	0.366	0.875	2e-68
P20027	302	Myb-related protein Hv33	N/A	no	0.289	0.427	0.748	6e-55
P80073	421	Myb-related protein Pp2 O	N/A	no	0.293	0.311	0.694	2e-52
O49608	274	Transcription factor MYB3	no	no	0.338	0.551	0.569	5e-51
Q50EX6	294	Protein ODORANT1 OS=Petun	N/A	no	0.336	0.510	0.613	2e-50
Q9SZP1	282	Transcription repressor M	no	no	0.316	0.5	0.602	2e-49
P81393	232	Myb-related protein 308 O	N/A	no	0.320	0.616	0.578	8e-49
P20025	255	Myb-related protein Zm38	N/A	no	0.291	0.509	0.638	1e-48
Q9S9K9	257	Transcription factor MYB3	no	no	0.293	0.509	0.625	6e-48
Q8GWP0	360	Transcription factor MYB3	no	no	0.286	0.355	0.643	1e-47

>sp|Q8LPH6|MYB86_ARATH Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1

 Score =  259 bits (663), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 113/129 (87%), Positives = 121/129 (93%)

Query: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60
           MGRHSCC+KQKLRKGLWSPEEDEKLL +IT++GHGCWSSVPK AGLQRCGKSCRLRWINY
Sbjct: 1   MGRHSCCFKQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINY 60

Query: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120
           LRPDLKRG FSQ EE+LIIELHA LGNRWSQIA +LPGRTDNEIKN WNSCLKKKLR++G
Sbjct: 61  LRPDLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKLRRKG 120

Query: 121 IDPVTHKPL 129
           IDP THKPL
Sbjct: 121 IDPTTHKPL 129

Probable transcription factor.
Arabidopsis thaliana (taxid: 3702)

>sp|P20027|MYB3_HORVU Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB2 PE=2 SV=3

 Score =  215 bits (547), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 98/131 (74%), Positives = 110/131 (83%), Gaps = 2/131 (1%)

Query: 1   MGRHS--CCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWI 58
           MGR S     + K+RKGLWSPEEDEKL  HI ++G GCWSSVP+ A L RCGKSCRLRWI
Sbjct: 1   MGRPSSGAVGQPKVRKGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAALNRCGKSCRLRWI 60

Query: 59  NYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQ 118
           NYLRPDLKRG FSQQEE+ I+ LH +LGNRWSQIA+ LPGRTDNEIKN WNSC+KKKLRQ
Sbjct: 61  NYLRPDLKRGCFSQQEEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNSCIKKKLRQ 120

Query: 119 RGIDPVTHKPL 129
           +GIDP THKP+
Sbjct: 121 QGIDPATHKPM 131

Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.

Hordeum vulgare (taxid: 4513)

>sp|P80073|MYB2_PHYPA Myb-related protein Pp2 OS=Physcomitrella patens subsp. patens GN=PP2 PE=2 SV=1

 Score =  206 bits (525), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 91/131 (69%), Positives = 106/131 (80%)

Query: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60
           MGR  CC K  LR+G W+ EED+KL+ HIT  G  CW ++PK AGL RCGKSCRLRW NY
Sbjct: 1   MGRKPCCEKVGLRRGPWTSEEDQKLVSHITNNGLSCWRAIPKLAGLLRCGKSCRLRWTNY 60

Query: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120
           LRPDLKRG FS+ EENLI++LHA LGNRWS+IAAQLPGRTDNEIKN WN+ LKK+LR +G
Sbjct: 61  LRPDLKRGIFSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYWNTRLKKRLRSQG 120

Query: 121 IDPVTHKPLSE 131
           +DP TH PL +
Sbjct: 121 LDPNTHLPLED 131

Possible transcription activator.

Physcomitrella patens subsp. patens (taxid: 145481)

>sp|O49608|MYB32_ARATH Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1

 Score =  202 bits (513), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 86/151 (56%), Positives = 119/151 (78%)

Query: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60
           MGR  CC K    KG W+ EED+KL+ +I  +G GCW S+P+ AGLQRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKDHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINY 60

Query: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120
           LRPDLKRG F+ +E++LII+LH++LGN+WS IA +LPGRTDNEIKN WN+ +K+KL ++G
Sbjct: 61  LRPDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKLLRKG 120

Query: 121 IDPVTHKPLSEVENGEDKNQTTNSQDKVSGV 151
           IDP TH+P++E +  +D + ++ ++D +  +
Sbjct: 121 IDPATHRPINETKTSQDSSDSSKTEDPLVKI 151

Arabidopsis thaliana (taxid: 3702)

>sp|Q50EX6|ODO1_PETHY Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1

 Score =  200 bits (508), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 92/150 (61%), Positives = 113/150 (75%)

Query: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60
           MGR  CC K  ++KG W+ EED+KL+  I   G  CW +VPK AGL+RCGKSCRLRW NY
Sbjct: 1   MGRQPCCDKLGVKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNY 60

Query: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120
           LRPDLKRG  S  EE L+I+LH+ LGNRWS+IAA+LPGRTDNEIKN WN+ +KKKL + G
Sbjct: 61  LRPDLKRGLLSDAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMG 120

Query: 121 IDPVTHKPLSEVENGEDKNQTTNSQDKVSG 150
           IDPVTH+PL +  N  D+  T + Q+K +G
Sbjct: 121 IDPVTHEPLKKEANLSDQPTTESDQNKENG 150

R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development.

Petunia hybrida (taxid: 4102)

>sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1

 Score =  197 bits (500), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 85/141 (60%), Positives = 108/141 (76%)

Query: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60
           MGR  CC K    KG W+ EEDE+L+ +I  +G GCW S+PK AGL RCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120
           LRPDLKRG F+++E+ LII+LH++LGN+WS IA +LPGRTDNEIKN WN+ +++KL  RG
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRG 120

Query: 121 IDPVTHKPLSEVENGEDKNQT 141
           IDP +H+P+ E    +D   T
Sbjct: 121 IDPTSHRPIQESSASQDSKPT 141

Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate.

Arabidopsis thaliana (taxid: 3702)

>sp|P81393|MYB08_ANTMA Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1

 Score =  194 bits (494), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 88/152 (57%), Positives = 113/152 (74%), Gaps = 9/152 (5%)

Query: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60
           MGR  CC K    KG W+ EED++L+ +I  +G GCW S+PK AGL RCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120
           LRPDLKRG F+++E+ LII+LH++LGN+WS IA +LPGRTDNEIKN WN+ +++KL  RG
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRG 120

Query: 121 IDPVTHKPLSEVENGEDKNQTTNSQDKVSGVS 152
           IDP TH+ +         N  T SQD+V+ +S
Sbjct: 121 IDPTTHRSI---------NDGTASQDQVTTIS 143

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|P20025|MYB38_MAIZE Myb-related protein Zm38 OS=Zea mays PE=2 SV=1

 Score =  194 bits (492), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 83/130 (63%), Positives = 106/130 (81%)

Query: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60
           MGR  CC K    +G W+ EEDE+L+ +I  +G GCW S+PK AGL RCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNRGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120
           LRPDLKRG F+  E++LI++LH++LGN+WS IAA+LPGRTDNEIKN WN+ +++KL  RG
Sbjct: 61  LRPDLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHVRRKLLGRG 120

Query: 121 IDPVTHKPLS 130
           IDPVTH+P++
Sbjct: 121 IDPVTHRPIA 130

Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis.

Zea mays (taxid: 4577)

>sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1

 Score =  192 bits (487), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 82/131 (62%), Positives = 107/131 (81%)

Query: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60
           MGR  CC K  + KG W+ EED+ L+ +I K+G GCW S+P+ AGLQRCGKSCRLRW+NY
Sbjct: 1   MGRSPCCEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNY 60

Query: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120
           LRPDLKRG F+++E+ LII+LH++LGN+WS IA +LPGRTDNEIKN WN+ +K+KL  RG
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRG 120

Query: 121 IDPVTHKPLSE 131
           IDP +H+ ++E
Sbjct: 121 IDPNSHRLINE 131

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1

 Score =  191 bits (485), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 83/129 (64%), Positives = 103/129 (79%), Gaps = 1/129 (0%)

Query: 1   MGRHSCCYKQK-LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWIN 59
           MGR  CC + K ++KG W PEED+KL  +I + G+G W S+PK AGL RCGKSCRLRW+N
Sbjct: 1   MGRSPCCDQDKGVKKGPWLPEEDDKLTAYINENGYGNWRSLPKLAGLNRCGKSCRLRWMN 60

Query: 60  YLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQR 119
           YLRPD++RG FS  EE+ I+ LHA+LGN+WS+IA  LPGRTDNEIKN WN+ ++KKL Q 
Sbjct: 61  YLRPDIRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKKLLQM 120

Query: 120 GIDPVTHKP 128
           GIDPVTH+P
Sbjct: 121 GIDPVTHEP 129

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	446
224130802	464	predicted protein [Populus trichocarpa]	0.986	0.948	0.663	1e-166
224068318	464	predicted protein [Populus trichocarpa]	0.986	0.948	0.634	1e-157
225437752	451	PREDICTED: uncharacterized protein LOC10	0.973	0.962	0.654	1e-150
212960297	395	myb-like transcription factor [Betula lu	0.874	0.987	0.612	1e-138
147833906	439	hypothetical protein VITISV_020114 [Viti	0.970	0.986	0.576	1e-128
225450423	439	PREDICTED: uncharacterized protein LOC10	0.970	0.986	0.576	1e-128
356501821	434	PREDICTED: uncharacterized protein LOC10	0.939	0.965	0.561	1e-125
383290953	440	R2R3-MYB transcription factor MYB2 [Epim	0.968	0.981	0.566	1e-124
224124530	441	predicted protein [Populus trichocarpa]	0.961	0.972	0.543	1e-119
385843225	428	putative transcription factor [Populus t	0.937	0.976	0.538	1e-118

>gi|224130802|ref|XP_002320929.1| predicted protein [Populus trichocarpa] gi|222861702|gb|EEE99244.1| predicted protein [Populus trichocarpa]

 Score =  592 bits (1526), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 312/470 (66%), Positives = 362/470 (77%), Gaps = 30/470 (6%)

Query: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60
           MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY
Sbjct: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60

Query: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120
           LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG
Sbjct: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120

Query: 121 IDPVTHKPLSEVENGEDKN-QTTNSQDKVSGVSG-ELNLLNTELTAKHGTTAALNEQKPT 178
           IDPVTHKPLSEVENGEDKN   + +QDK S VS  ELNLL  + +   G  A L E++ +
Sbjct: 121 IDPVTHKPLSEVENGEDKNPPASGTQDKASAVSNTELNLLKADNSKSSG--ANLQEKRSS 178

Query: 179 SVTAQAYHLSEIQGSSIPSTVNNN-----------------RSNFYTHRFASSNQESSSI 221
            ++   Y L E + +S    +N N                   +F+  RF +S+ + S+ 
Sbjct: 179 PISPNGYQL-ERESTSGSKVMNGNGNNTNDHVNNNLMTPTSNKDFFLDRFTASHHQGST- 236

Query: 222 TNSQPSDFVGHFPLQQLNCASNARLSTAASNSPLWFMQTSKSFDINSQFSSNAMPTILPP 281
           +N QPSDFVGHFPLQQLN ASNARL+T +  S LW  QTSK+FD+NS+FSS A+P+ILPP
Sbjct: 237 SNCQPSDFVGHFPLQQLNYASNARLATNSIPS-LWLSQTSKAFDMNSEFSSTAIPSILPP 295

Query: 282 VSSSSLFSAPMSYKTSVTLPSDNHSIPSFTVNGSRYWEAG---GASNSNSVSSSSTELQS 338
             +SS  S  MSYK S+T+  DN S+PSFT N  R WE G     SNSN+VS+ STELQS
Sbjct: 296 AVTSSFHSTSMSYKPSITVSPDNPSLPSFTTNSCRLWETGTPRSNSNSNTVSNGSTELQS 355

Query: 339 TSSFLESSIFPWGLADCSSSEKEGQINLIDSHPDDVKWPEYFQTPSLLMAAALQNQTSQS 398
            SSF E++IF WGL +C S+EKE Q +L+ S  +D+KWPEY Q P LLMAAALQNQ  QS
Sbjct: 356 NSSFFENAIFSWGLGECGSAEKEAQNHLMGSQHEDIKWPEYLQNP-LLMAAALQNQNQQS 414

Query: 399 LYNEIKSETHILTDSSSGIWPQN--QQQPLQNSDICAKEIQRLTATYGHI 446
           LYNEIKSET ++T++SSG+WP N  QQQPLQN DIC ++IQR+TA+YG+I
Sbjct: 415 LYNEIKSETQVVTENSSGMWPHNHQQQQPLQNPDICPRDIQRITASYGYI 464

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068318|ref|XP_002302702.1| predicted protein [Populus trichocarpa] gi|222844428|gb|EEE81975.1| predicted protein [Populus trichocarpa]

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 298/470 (63%), Positives = 352/470 (74%), Gaps = 30/470 (6%)

Query: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60
           MGRHSCCYKQKLRKGLWSPEEDEKLL HITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY
Sbjct: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLSHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60

Query: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120
           LRPDLKRGTFS  EENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL+QRG
Sbjct: 61  LRPDLKRGTFSHLEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLKQRG 120

Query: 121 IDPVTHKPLSEVENGEDKN-QTTNSQDKVSGVSG-ELNLLNTELTAKHGTTAALNEQKPT 178
           IDPVTHKPLSEVE+GEDKN   + +QDK S VS  ELNLL  + +   G  A L E++ +
Sbjct: 121 IDPVTHKPLSEVEDGEDKNPAASRNQDKASAVSNTELNLLKADHSKPLG--ANLQEKRSS 178

Query: 179 SVTAQAYHLSEIQGSSIPS-----------------TVNNNRSNFYTHRFASSNQESSSI 221
           S++     L     SS  +                 T  +N+ +F+  RF +   E S+ 
Sbjct: 179 SISPHGNQLERESTSSFKAMNENNNNTNDHGNNNLMTPTSNK-DFFFDRFTAFLHEGST- 236

Query: 222 TNSQPSDFVGHFPLQQLNCASNARLSTAASNSPLWFMQTSKSFDINSQFSSNAMPTILPP 281
           +N  PS FVGHFPLQQLN ASNARL+T +  S LW  QTSK+F +N +FSS  +P+I PP
Sbjct: 237 SNCPPSGFVGHFPLQQLNYASNARLATNSIPS-LWLSQTSKAFGMNCEFSSTMIPSIPPP 295

Query: 282 VSSSSLFSAPMSYKTSVTLPSDNHSIPSFTVNGSRYWEAGG---ASNSNSVSSSSTELQS 338
             +SS  S+ M YK S+T+P DN S+PSFT N  R WE G     SNS++ S+ STELQS
Sbjct: 296 AVTSSFLSSSMGYKPSITVPPDNPSLPSFTTNSYRPWETGAPSNNSNSSTGSNGSTELQS 355

Query: 339 TSSFLESSIFPWGLADCSSSEKEGQINLIDSHPDDVKWPEYFQTPSLLMAAALQNQTSQS 398
            SSF E++IF WGL DCSS+EKE Q +LI S  +D++WPEY Q P LLMAA+LQNQ  QS
Sbjct: 356 NSSFFENTIFSWGLGDCSSTEKEAQNHLIGSQQEDIRWPEYLQNP-LLMAASLQNQNQQS 414

Query: 399 LYNEIKSETHILTDSSSGIWPQNQ--QQPLQNSDICAKEIQRLTATYGHI 446
           LYNEIK+ETH+LT++ SG+WP NQ  Q+PLQN DIC K++QR+TA+YG++
Sbjct: 415 LYNEIKTETHLLTENPSGMWPDNQQEQEPLQNPDICPKDMQRITASYGYV 464

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437752|ref|XP_002281027.1| PREDICTED: uncharacterized protein LOC100247039 [Vitis vinifera]

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 303/463 (65%), Positives = 354/463 (76%), Gaps = 29/463 (6%)

Query: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60
           MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY
Sbjct: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60

Query: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120
           LRPDLKRGTFS QEENLIIELH+VLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG
Sbjct: 61  LRPDLKRGTFSLQEENLIIELHSVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120

Query: 121 IDPVTHKPLSEVENGEDKNQTTNSQDKVSGVSGELNLLNTELTAKHGTTAALNEQKPTSV 180
           IDP THKPLSEVEN ED N  T+SQDK SGVS ELNLL  + +      AAL EQ+ +S+
Sbjct: 121 IDPNTHKPLSEVENREDSNPPTDSQDKASGVSSELNLLKVDNSKPE---AALLEQRSSSI 177

Query: 181 TAQAYHLSEIQGSSIPSTVNNNR--------------SNFYTHRFASSNQESSSITNSQP 226
             + Y + E++GSS   T+N+N                +F+  RF  S+QE+S  T  QP
Sbjct: 178 ATRGYGM-EVEGSSSSKTINSNNNNNSNSNLMSPTPNKDFFLDRFMISHQENS--TGCQP 234

Query: 227 SDFVGHFPLQQLNCASNARLSTAASNSPLWFMQTSKSFDINSQFSSNAMPTILPPVSSSS 286
           SD VG+   QQLN  SNARLS   +  PLWF Q+SK+ D+NS+FSSNA+ + +    +SS
Sbjct: 235 SDVVGYLAPQQLNYPSNARLSINPTQ-PLWFSQSSKTLDMNSEFSSNAV-SSVLSSVTSS 292

Query: 287 LFSAPMSYKTSVTLPSDNHSIPSFTVNGSRYWEA---GGASNSNSVSSSSTELQSTSSFL 343
           L  +PM YK S+   SDN SIPSFT++GSR+W+A     +SNS+S SSSS ELQS SSF 
Sbjct: 293 LLPSPMPYKPSIPFHSDNPSIPSFTLSGSRFWDAGASTNSSNSSSGSSSSAELQSNSSFF 352

Query: 344 ESSIFPWGLADCSSSEKEGQINLIDSHPDDVKWPEYFQTPSLLMAAALQNQTSQSLYNEI 403
           E+SIFPWGLADCS+S+K  QI++I+S P+D+KWPEY Q P  LMAAALQNQT Q LYNEI
Sbjct: 353 ENSIFPWGLADCSTSDKGAQIHIIESEPEDIKWPEYLQNP-FLMAAALQNQTPQPLYNEI 411

Query: 404 KSETHILTDSSSGIWPQNQQQPLQNSDICAKEIQRLTATYGHI 446
           KSETH +T++SS +W  +QQ   Q   + A +IQRL AT+GHI
Sbjct: 412 KSETHFITETSSAMWAHSQQ---QQEHLQAPDIQRLPATFGHI 451

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212960297|gb|ACJ38663.1| myb-like transcription factor [Betula luminifera]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 275/449 (61%), Positives = 323/449 (71%), Gaps = 59/449 (13%)

Query: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60
           MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY
Sbjct: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60

Query: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120
           LRPDLKRGTFSQ+EENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG
Sbjct: 61  LRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120

Query: 121 IDPVTHKPLSEVENG-EDKNQTTNSQDKVSGVSGELNLLNTELTAKHGTTAALNEQKPTS 179
           IDPVTHKP+SEVENG EDK+    S+DK+S VS ELNLL  E           + ++ + 
Sbjct: 121 IDPVTHKPISEVENGEEDKDTEAKSKDKMSVVSNELNLLKAE-----------SSRQESP 169

Query: 180 VTAQAYHLSEIQGSSIPSTVNNNRSNFYTHRFASSNQESSSITNSQPSDFVGHFPLQQLN 239
           + AQ Y L E+QG+++ +   NN    + H       + +S TN QPS+ VGHFPLQQLN
Sbjct: 170 IAAQGYPL-EVQGNNLMTPTANND---FLH-------QDTSTTNCQPSELVGHFPLQQLN 218

Query: 240 CASNARLSTAASNSPLWFMQTSKSFDINSQFSSNAMPTILPPVSSSSLFSAPMSYKTSVT 299
            ASNA      SN   WF Q+ KSFD+NS+F+S     +LP           + YK S+T
Sbjct: 219 YASNA----TNSNPTQWFTQSGKSFDMNSEFAS-----MLP---------NSIGYKPSLT 260

Query: 300 LPSDNHSIPSFTVNGSRYWEAGGASNSNSVSSSSTELQSTSSFLESSIFPWGLADCSSSE 359
            P+DN S+ SFTVNGSRYWE  GA    + +++S    S+SS LE+S+F WGLADC +S+
Sbjct: 261 FPADNVSMSSFTVNGSRYWEGSGA----AAATNSNSGSSSSSLLENSMFSWGLADCGTSD 316

Query: 360 KEGQINLIDSHPDDVKWPEYFQTPSLLMAAALQNQTSQSLYNEIKSETHILTD-SSSGIW 418
           KE Q +L     +D+KW EYF  P LLMAAALQNQT Q LYNEIKSETH++TD +S+ +W
Sbjct: 317 KETQTHLT----EDIKWAEYFNNP-LLMAAALQNQTPQCLYNEIKSETHLVTDTTSTAMW 371

Query: 419 PQN--QQQPLQNSDICAKEIQRLTATYGH 445
             +  QQ  LQ         +RL A +GH
Sbjct: 372 AHHNKQQGSLQTHS------ERLAAAFGH 394

Source: Betula luminifera

Species: Betula luminifera

Genus: Betula

Family: Betulaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833906|emb|CAN62191.1| hypothetical protein VITISV_020114 [Vitis vinifera]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 260/451 (57%), Positives = 314/451 (69%), Gaps = 18/451 (3%)

Query: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60
           MGRHSCCYKQKLRKGLWSPEEDEKLL HITKYGHGCWSSVPK AGLQRCGKSCRLRWINY
Sbjct: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLMHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINY 60

Query: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120
           LRPDLKRG FSQQEE+LIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSC+KKKLRQ+G
Sbjct: 61  LRPDLKRGAFSQQEESLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCIKKKLRQKG 120

Query: 121 IDPVTHKPLSEVENGEDKNQTTNSQDKVSGVSGELNLLNTELTAKHGTTAALNEQKPTSV 180
           IDP THKPL E ENG+DK     + DK +  + ELNL+  E   K  +TAA  EQ P  V
Sbjct: 121 IDPNTHKPLVEAENGQDK---LPNSDKSNEKANELNLVEAE-NLKPLSTAA--EQYPVEV 174

Query: 181 TAQAYHLSEIQGSSIPSTVNNNRSNFYTHRFASSNQESSSITNSQPSDFVGHFPLQQLNC 240
           +  +   S   G+++  T       F+  RF +S++  SS T+ +PS  VGHF  QQLN 
Sbjct: 175 SPSSKINSSSNGNNL--TXPQPTQEFFLDRFVTSHE--SSTTSCRPSGLVGHFSFQQLNY 230

Query: 241 ASNARLSTAASNSPLWFMQTSKSFDINSQFSSNAMPTILPPVSSSSLFSAPMSYKTSVTL 300
             N  LS    N+ L F   S+S +I S+FSS+  PTILP +  S++   P S K S++L
Sbjct: 231 GPNIGLSVNP-NATLSFNPNSRSPEIISEFSSSMTPTILPSM-LSTILPTPTSIKPSISL 288

Query: 301 PSDNHSIPSFTVNGSRYWEAG---GASNSNSVSSSSTELQSTSSFLESSIFPWGLADCSS 357
           PS N SI SF VNG + WE G     ++S++ S +S ELQS S+F E++ F  GLADC  
Sbjct: 289 PSSNPSIGSFDVNGVQNWEVGTFSNNASSSNGSRNSIELQSNSAFFENNFFSLGLADCGK 348

Query: 358 SEKEGQINLIDSHPDDVKWPEYFQTPSLLMAAALQNQTSQSLYNEIKSETHILTDSSSGI 417
           S+KE QI++++  P+D+KW EY  TP  L+   LQNQ+ Q +Y+E K   H  TD SS  
Sbjct: 349 SDKENQIHMLEGDPEDIKWSEYLHTP-FLLGTTLQNQSPQPIYSETKPGIHFTTDGSSTG 407

Query: 418 WPQNQQ-QPLQNS-DICAKEIQRLTATYGHI 446
           W QNQQ QP+Q S DI  K++QRL   +G I
Sbjct: 408 WHQNQQEQPIQASADIYTKDLQRLGVAFGQI 438

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450423|ref|XP_002276091.1| PREDICTED: uncharacterized protein LOC100240910 [Vitis vinifera]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 260/451 (57%), Positives = 314/451 (69%), Gaps = 18/451 (3%)

Query: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60
           MGRHSCCYKQKLRKGLWSPEEDEKLL HITKYGHGCWSSVPK AGLQRCGKSCRLRWINY
Sbjct: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLMHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINY 60

Query: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120
           LRPDLKRG FSQQEE+LIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSC+KKKLRQ+G
Sbjct: 61  LRPDLKRGAFSQQEESLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCIKKKLRQKG 120

Query: 121 IDPVTHKPLSEVENGEDKNQTTNSQDKVSGVSGELNLLNTELTAKHGTTAALNEQKPTSV 180
           IDP THKPL E ENG+DK     + DK +  + ELNL+  E   K  +TAA  EQ P  V
Sbjct: 121 IDPNTHKPLVEAENGQDK---LPNSDKSNEKANELNLVEAE-NLKPLSTAA--EQYPVEV 174

Query: 181 TAQAYHLSEIQGSSIPSTVNNNRSNFYTHRFASSNQESSSITNSQPSDFVGHFPLQQLNC 240
           +  +   S   G+++  T       F+  RF +S++  SS T+ +PS  VGHF  QQLN 
Sbjct: 175 SPSSKINSSSNGNNL--TPPQPTQEFFLDRFVTSHE--SSTTSCRPSGLVGHFSFQQLNY 230

Query: 241 ASNARLSTAASNSPLWFMQTSKSFDINSQFSSNAMPTILPPVSSSSLFSAPMSYKTSVTL 300
             N  LS    N+ L F   S+S +I S+FSS+  PTILP +  S++   P S K S++L
Sbjct: 231 GPNIGLSVNP-NATLSFNPNSRSPEIISEFSSSMTPTILPSM-LSTILPTPTSIKPSISL 288

Query: 301 PSDNHSIPSFTVNGSRYWEAG---GASNSNSVSSSSTELQSTSSFLESSIFPWGLADCSS 357
           PS N SI SF VNG + WE G     ++S++ S +S ELQS S+F E++ F  GLADC  
Sbjct: 289 PSSNPSIGSFDVNGVQNWEVGTFSNNASSSNGSRNSIELQSNSAFFENNFFSLGLADCGK 348

Query: 358 SEKEGQINLIDSHPDDVKWPEYFQTPSLLMAAALQNQTSQSLYNEIKSETHILTDSSSGI 417
           S+KE QI++++  P+D+KW EY  TP  L+   LQNQ+ Q +Y+E K   H  TD SS  
Sbjct: 349 SDKENQIHMLEGDPEDIKWSEYLHTP-FLLGTTLQNQSPQPIYSETKPGIHFTTDGSSTG 407

Query: 418 WPQNQQ-QPLQNS-DICAKEIQRLTATYGHI 446
           W QNQQ QP+Q S DI  K++QRL   +G I
Sbjct: 408 WHQNQQEQPIQASADIYTKDLQRLGVAFGQI 438

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501821|ref|XP_003519722.1| PREDICTED: uncharacterized protein LOC100782199 [Glycine max]

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 259/461 (56%), Positives = 329/461 (71%), Gaps = 42/461 (9%)

Query: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60
           MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY
Sbjct: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60

Query: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120
           LRPDLKRGTFSQ+EENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQ+G
Sbjct: 61  LRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQKG 120

Query: 121 IDPVTHKPLSEVENGEDKNQTTNSQDKVSGVSGELNLLNTELTAKHGTTAALNEQKPTSV 180
           IDPVTHKPLSEVENGE          K + VS ELNLL +E +    + +A  EQ+ TS+
Sbjct: 121 IDPVTHKPLSEVENGE----------KAAEVSNELNLLKSESSK---SDSASYEQR-TSI 166

Query: 181 TAQAYHLSEIQGS-----SIPSTVNNNRSN--FYTHRFASSNQESSSITNSQPSDFVGHF 233
           + +AY   E+ GS      I    NNN  N   +  RF SS+++ S  T+ QPSD +G+F
Sbjct: 167 SPKAY-APEMDGSCSSKIEINFVTNNNCYNKDLFLDRFMSSSRQESYTTSCQPSDLMGNF 225

Query: 234 PLQQLNCASNARLSTAASNSPLWFMQTSKSFDINSQFSSNAMPTILPPVSSSSLF--SAP 291
           P+ Q++ A+N +     SNS  WF QT +SFD+N++F  NA  T + P  +++LF  +  
Sbjct: 226 PI-QMSYATNDQCLPNDSNSSHWFSQTGRSFDMNTEFPFNAAVTSINPTPTTNLFLPNNS 284

Query: 292 MSYKTSVTLPSDNHSIPSFTVNGSRYWEAGGASNSNSVSSSSTELQSTSSFLESSIF-PW 350
             YK S+ +PSDN SIP     GS YWEA    ++++ S+SSTEL+S+S     +IF  W
Sbjct: 285 FCYKPSLAVPSDNVSIPY----GSHYWEA----SASNNSNSSTELRSSSPL---NIFSSW 333

Query: 351 GLADC-SSSEKEGQINLIDSH-PDDVKWPEYFQTPSLLMAAALQNQTSQSLYNEIKSETH 408
           GLADC +S+ KE QI+++++H  ++ KW EY   P  ++A+++QNQ  +SL N+IK+  H
Sbjct: 334 GLADCGTSTTKEAQIHMMENHNTEEAKWDEYLHNPISMLASSVQNQAPESLCNDIKTSMH 393

Query: 409 ILTDSSSGIWPQN---QQQPLQNSDICAKEIQRLTATYGHI 446
           ++ D+   + P N   QQ+  Q S   +K+IQ+L A +GH+
Sbjct: 394 LVPDTLGAMLPHNHTKQQEQSQTSSFFSKDIQKLRAAFGHM 434

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383290953|gb|AFH03054.1| R2R3-MYB transcription factor MYB2 [Epimedium sagittatum]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 257/454 (56%), Positives = 319/454 (70%), Gaps = 22/454 (4%)

Query: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60
           MGRHSCCYKQKLRKGLWSPEEDEKLLRHIT+YGHGCWSSVPKQAGLQRCGKSCRLRWINY
Sbjct: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITRYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60

Query: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120
           LRPDLKRGTFSQQEEN IIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSC+KKKLRQRG
Sbjct: 61  LRPDLKRGTFSQQEENHIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCIKKKLRQRG 120

Query: 121 IDPVTHKPLSEVENGEDKNQTTNSQDKVSGVSGELNLLNTELTAKHGTTAALNEQKPTSV 180
           IDP THKPLSEVEN E      N+++     S E+N+L  E       T+A  E KP   
Sbjct: 121 IDPNTHKPLSEVENEEK--LANNNKNSGESNSNEMNILTAE-------TSAPPEPKPPIY 171

Query: 181 TAQAYHLSEIQGSSIPS----TVNNNRSNFYTHRFASSNQESSSITNSQPSDFVGHFPLQ 236
           +   + +     S   +    TVN    +F+  RF +++  SS  T+ +PSD + +FPLQ
Sbjct: 172 SGNRFSVEGPSNSKFSNTNSITVNPTTKDFFLDRFIATHNTSS--TSCRPSDSLEYFPLQ 229

Query: 237 QLNCASNARLSTAASNSPLWFMQTSKSFDINSQFSSNAMPTILPPVSSSSLFSAPMSYKT 296
           QL+  SNA LS A  N  LWF Q  K F++N++F+SN+  ++LP V S+++    M +K+
Sbjct: 230 QLSYGSNAGLS-ATHNPVLWFNQNCKPFEMNTEFNSNSTSSVLPSV-STTILPTTMGFKS 287

Query: 297 SVTLPSDNHSIPSFTVNGSRYWEAGGA---SNSNSVSSSSTELQSTSSFLESSIFPWGLA 353
           S++LPSDN    +F ++G ++WEAG A   S SNS SSSS ELQS++S  E+++F WG A
Sbjct: 288 SLSLPSDNPPPTTFNMSGGQFWEAGNASNTSRSNSGSSSSIELQSSNSMFENNVFSWGSA 347

Query: 354 DCSSSEKEGQINLIDSHPDDVKWPEYFQTPSLLMAAALQNQTSQSLYNEIKSETHILTDS 413
           DCS  +KE QI+  ++ P+D+KW EY Q   L+ AA  Q+ T Q LYNEIKSE    ++ 
Sbjct: 348 DCSVPDKEAQIHPPEAEPEDIKWSEYLQNTFLMAAATSQSPTPQPLYNEIKSENQFTSNE 407

Query: 414 SSGIWPQNQQQPLQNSDICAKEIQRL-TATYGHI 446
           ++  W   QQQ LQ SD+  K+ QR   A +G I
Sbjct: 408 TTTPW-HQQQQQLQASDMYVKDFQRFAAAAFGQI 440

Source: Epimedium sagittatum

Species: Epimedium sagittatum

Genus: Epimedium

Family: Berberidaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124530|ref|XP_002330046.1| predicted protein [Populus trichocarpa] gi|222871471|gb|EEF08602.1| predicted protein [Populus trichocarpa]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 246/453 (54%), Positives = 307/453 (67%), Gaps = 24/453 (5%)

Query: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60
           MGRHSCCYKQKLRKGLWSPEEDEKLL +ITK+GHGCWSSVPKQA LQRCGKSCRLRWINY
Sbjct: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKQADLQRCGKSCRLRWINY 60

Query: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120
           LRPDLKRG FSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSC+KKKLRQRG
Sbjct: 61  LRPDLKRGAFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCIKKKLRQRG 120

Query: 121 IDPVTHKPLSEVENGEDKNQTT--NSQDKVSGVSGELNLLNTELTAKHGTTAALNEQKPT 178
           IDP THKPLSEVEN ++K Q T   S +KVS VS ELNL+            A   Q P 
Sbjct: 121 IDPNTHKPLSEVENCKEKQQPTADKSNEKVSNVSNELNLIE-----------AATLQPPA 169

Query: 179 SVTAQAYHLSEIQGSSIPSTVNNNRSN-FYTHRFASSNQESSSITNSQPSDFVGHFPLQQ 237
             ++   + S+ + SS  +  N   +  F+  RF +S++  SS  + +PSD +G+FP Q+
Sbjct: 170 ISSSSKINNSKDRNSSSSNMTNTPPTKEFFLDRFGTSHE--SSPASCRPSDLMGYFPFQK 227

Query: 238 LNCASNARLSTAASNSPLWFMQTSKSFDINSQFSSNAMPTILPPVSSSSLFSAPMSYKTS 297
           L+   +  LS    N+ L F   S S  I+ +F+S   P  + P  S+S+F  P+  K S
Sbjct: 228 LDYKPSIGLSMNP-NTTLCFNPNSSSEMISHEFNSCMTPPTILPSVSTSMFQTPIRVKPS 286

Query: 298 VTLPSD-NHSIPSFTVNGSRYWEA---GGASNSNSVSSSSTELQSTSSFLESSIFPWGLA 353
           V+LPSD N S+ S  VNG + WEA       + ++ SSSS ELQS ++F ESS F WGLA
Sbjct: 287 VSLPSDHNPSVGSCDVNGVQNWEASSFSNNGSGSNGSSSSIELQSNTNFYESSAFSWGLA 346

Query: 354 DCSSSEKEGQI-NLIDSHPDDVKWPEYFQTPSLLMAAALQNQTSQSLYNEIKSETHILTD 412
           +C  S +E  + +L +   +D+KW EY  T +  + + +QNQTSQ +Y+E+K ETH + +
Sbjct: 347 NCGKSGEESHLRSLENDTAEDIKWSEYLNT-TFFLGSTIQNQTSQHVYSEVKPETHFIAE 405

Query: 413 SSSGIW-PQNQQQPLQNSDICAKEIQRLTATYG 444
            SS  W P   QQ  Q +DI  K++QRL   +G
Sbjct: 406 GSSASWIPNQHQQASQPADIYTKDLQRLAVAFG 438

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|385843225|gb|AFI80906.1| putative transcription factor [Populus tomentosa]

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 244/453 (53%), Positives = 305/453 (67%), Gaps = 35/453 (7%)

Query: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60
           MGRHSCCYKQKLRKGLWSPEEDEKLL +ITK+G GCWSSVPK AGLQRCGKSCRLRWINY
Sbjct: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGLGCWSSVPKLAGLQRCGKSCRLRWINY 60

Query: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120
           LRPDLKRG FSQQEE+LIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSC+KKKLRQRG
Sbjct: 61  LRPDLKRGAFSQQEESLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCIKKKLRQRG 120

Query: 121 IDPVTHKPLSEVENGEDKNQTT--NSQDKVSGVSGELNLLNTELTAKHGTTAALNEQKPT 178
           IDP THK LSE E+G++K Q T   S +KVS VS ELNL+           AAL   KP 
Sbjct: 121 IDPNTHKSLSEAEDGKEKQQLTADKSNEKVSIVSNELNLIE---------AAAL---KPP 168

Query: 179 SVTAQAYHLSEIQGSSIPSTVNNNRSNFYTHRFASSNQESSSITNSQPSDFVGHFPLQQL 238
           +V++++        S++P T       F+  RF +S+ ESS+  +  PSD + +FP Q+L
Sbjct: 169 AVSSRS--------SNVPPT-----QEFFLDRFGTSH-ESSTTASCMPSDLMDYFPFQKL 214

Query: 239 NCASNARLSTAASNSPLWFMQTSKSFDINSQFSSNAMPTILPPVSSSSLFSAPMSYKTSV 298
           +      LS   + +  +   +S S  I+ +F+S+  P  + P  S+S+F  P+  K SV
Sbjct: 215 DYKPFIDLSMNPNTTLCFNPNSSSSEMISHEFNSSMTPPTILPSVSTSMFQTPICVKPSV 274

Query: 299 TLPSD-NHSIPSFTVNGSRYWEAGG---ASNSNSVSSSSTELQSTSSFLESSIFPWGLAD 354
           +LPSD N S+ S  VNG + WEA       + ++ SSSS ELQ  ++F ESS F WGLAD
Sbjct: 275 SLPSDHNPSVGSCDVNGVQNWEASSFSNNGSRSNGSSSSIELQRNTNFFESSAFSWGLAD 334

Query: 355 CSSSEKEGQI-NLIDSHPDDVKWPEYFQTPSLLMAAALQNQTSQSLYNEIKSETHILTDS 413
           C  S  E  + +L +   +D+KW EY  TP   + + +QNQTSQ +Y+E+K ETH +   
Sbjct: 335 CGKSSVEAHLRSLANETVEDIKWSEYVSTP-FFLGSTIQNQTSQHVYSEVKPETHFIAQG 393

Query: 414 SSGIWPQNQ-QQPLQNSDICAKEIQRLTATYGH 445
           SS  W QNQ QQ  Q +DI  K++QRL   +G 
Sbjct: 394 SSTSWLQNQHQQASQPADIYTKDLQRLAVAFGQ 426

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	446
TAIR|locus:2012375	366	MYB61 "AT1G09540" [Arabidopsis	0.336	0.409	0.833	9.3e-84
TAIR|locus:2133382	348	MYB55 "myb domain protein 55"	0.383	0.491	0.721	1.9e-79
TAIR|locus:2146804	352	MYB86 "myb domain protein 86"	0.358	0.454	0.736	2.6e-67
TAIR|locus:2027508	314	MYB50 "myb domain protein 50"	0.686	0.974	0.479	6.5e-67
TAIR|locus:2087725	307	MYB67 "myb domain protein 67"	0.450	0.654	0.511	1e-52
TAIR|locus:2195528	370	AtMYB103 "myb domain protein 1	0.286	0.345	0.687	2e-51
TAIR|locus:2149000	336	MYB9 "myb domain protein 9" [A	0.450	0.598	0.490	3.3e-51
TAIR|locus:2121259	282	MYB4 "myb domain protein 4" [A	0.316	0.5	0.602	4.2e-51
TAIR|locus:2131576	274	MYB32 "myb domain protein 32"	0.327	0.532	0.589	4.6e-50
TAIR|locus:2102152	388	MYB106 "myb domain protein 106	0.311	0.358	0.640	3.3e-49

TAIR|locus:2012375 MYB61 "AT1G09540" [Arabidopsis thaliana (taxid:3702)]

 Score = 696 (250.1 bits), Expect = 9.3e-84, Sum P(2) = 9.3e-84
 Identities = 125/150 (83%), Positives = 137/150 (91%)

Query:     1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60
             MGRHSCCYKQKLRKGLWSPEEDEKLL HIT +GHGCWSSVPK AGLQRCGKSCRLRWINY
Sbjct:     1 MGRHSCCYKQKLRKGLWSPEEDEKLLTHITNHGHGCWSSVPKLAGLQRCGKSCRLRWINY 60

Query:    61 LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120
             LRPDLKRG FS +EENLI+ELHAVLGNRWSQIA++LPGRTDNEIKNLWNS +KKKL+QRG
Sbjct:    61 LRPDLKRGAFSPEEENLIVELHAVLGNRWSQIASRLPGRTDNEIKNLWNSSIKKKLKQRG 120

Query:   121 IDPVTHKPLSEVENGEDKNQTTNSQDKVSG 150
             IDP THKP+SEVE+  DK++ T S +K SG
Sbjct:   121 IDPNTHKPISEVESFSDKDKPTTSNNKRSG 150

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0010214 "seed coat development" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0010089 "xylem development" evidence=IMP;RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0001944 "vasculature development" evidence=IMP

GO:0048364 "root development" evidence=IMP

TAIR|locus:2133382 MYB55 "myb domain protein 55" [Arabidopsis thaliana (taxid:3702)]

 Score = 679 (244.1 bits), Expect = 1.9e-79, Sum P(3) = 1.9e-79
 Identities = 137/190 (72%), Positives = 148/190 (77%)

Query:     1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAG------------LQR 48
             MGRHSCCYKQKLRKGLWSPEEDEKLLR+ITKYGHGCWSSVPKQAG            LQR
Sbjct:     1 MGRHSCCYKQKLRKGLWSPEEDEKLLRYITKYGHGCWSSVPKQAGTFLFIQIHLLFGLQR 60

Query:    49 CGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLW 108
             CGKSCRLRWINYLRPDLKRG FSQ EENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLW
Sbjct:    61 CGKSCRLRWINYLRPDLKRGAFSQDEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLW 120

Query:   109 NSCLKKKLRQRGIDPVTHKPLSEVENGEDKNQTTNSQDKVSGVSGELNLLNTELTAKHGT 168
             NSCLKKKLR RGIDPVTHK L+E+E G D    T   +K    S +  L+ T+ ++   T
Sbjct:   121 NSCLKKKLRLRGIDPVTHKLLTEIETGTDDK--TKPVEK----SQQTYLVETDGSSST-T 173

Query:   169 TAALNEQKPT 178
             T + N+   T
Sbjct:   174 TCSTNQNNNT 183

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2146804 MYB86 "myb domain protein 86" [Arabidopsis thaliana (taxid:3702)]

 Score = 653 (234.9 bits), Expect = 2.6e-67, Sum P(2) = 2.6e-67
 Identities = 120/163 (73%), Positives = 138/163 (84%)

Query:     1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60
             MGRHSCC+KQKLRKGLWSPEEDEKLL +IT++GHGCWSSVPK AGLQRCGKSCRLRWINY
Sbjct:     1 MGRHSCCFKQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINY 60

Query:    61 LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120
             LRPDLKRG FSQ EE+LIIELHA LGNRWSQIA +LPGRTDNEIKN WNSCLKKKLR++G
Sbjct:    61 LRPDLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKLRRKG 120

Query:   121 IDPVTHKPL--SEVENGEDKNQTTNSQDKVSGVSGELNLLNTE 161
             IDP THKPL  +E+++    +Q   S + V   +G +N L+ +
Sbjct:   121 IDPTTHKPLITNELQSLNVIDQKLTSSEVVKS-TGSINNLHDQ 162

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2027508 MYB50 "myb domain protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 153/319 (47%), Positives = 198/319 (62%)

Query:     1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60
             M RHSCCYKQKLRKGLWSPEEDEKLL +ITK+GHGCWSSVPK AGL+RCGKSCRLRWINY
Sbjct:     1 MKRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLERCGKSCRLRWINY 60

Query:    61 LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120
             LRPDLKRG FS +E+NLI+ELHAVLGNRWSQIAA+LPGRTDNEIKNLWNSC+KKKL ++G
Sbjct:    61 LRPDLKRGAFSSEEQNLIVELHAVLGNRWSQIAARLPGRTDNEIKNLWNSCIKKKLMKKG 120

Query:   121 IDPVTHKPLSEVENGEDKNQTTNSQDKVSGVSGELNL-LNTELTAKHGTTAALNEQKPTS 179
             IDP+THKPLSEV  G++ N++ N+    +  S E N  L  + T+     +A  +++  S
Sbjct:   121 IDPITHKPLSEV--GKETNRSDNNNS--TSFSSETNQDLFVKKTSDFAEYSAFQKEESNS 176

Query:   180 VTAQAYHLSEI--QGSSIPSTVNNNRSNFYTHRFAXXXXXXXXXXXXXPSDFVG--HFPL 235
             V+ +    S I  Q +    +V+N  + F T                  S   G  H  +
Sbjct:   177 VSLRNSLSSMIPTQFNIDDGSVSN--AGFDTQVCVKPSIILLPPPNNTSSTVSGQDHVNV 234

Query:   236 QQLNCASNARLSTAASNSPLWFMQTSKSFDINSQFSSNAMPTILPPVSSSSLFSAPMSYK 295
              + N  SN+  ++  +N  +  M+ S+ +   S FS+          +S+  F    S  
Sbjct:   235 SEPNWESNSGTTSHLNNPGMEEMKWSEEYLNESLFSTQVYVKSETDFNSNIAFPWSQSQA 294

Query:   296 TSVTLPSDNHSIPSFTVNG 314
               V  P D   + +F+  G
Sbjct:   295 CDV-FPKDLQRM-AFSFGG 311

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2087725 MYB67 "myb domain protein 67" [Arabidopsis thaliana (taxid:3702)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 109/213 (51%), Positives = 140/213 (65%)

Query:     1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60
             MG H CC K K+++GLWSPEEDEKLLR+IT +GH  WSSVPK AGLQRCGKSCRLRWINY
Sbjct:    12 MG-HRCCGKHKVKRGLWSPEEDEKLLRYITTHGHPSWSSVPKLAGLQRCGKSCRLRWINY 70

Query:    61 LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120
             LRPDL+RG+F+++EE +II++H +LGN+W+QIA  LPGRTDNE+KN WNSC+KKKL  +G
Sbjct:    71 LRPDLRRGSFNEEEEQIIIDVHRILGNKWAQIAKHLPGRTDNEVKNFWNSCIKKKLLSQG 130

Query:   121 IDPVTHKPL-SEVENGEDKNQTTNSQDKVSGVSGELNLLNTELTAKHGTTAALNEQKPTS 179
             +DP TH  + S   +    N      +K + +      L+   TA   T    N   PTS
Sbjct:   131 LDPSTHNLMPSHKRSSSSNNNNIPKPNKTTSIMKNPTDLDQSTTAFSIT----NINPPTS 186

Query:   180 VTAQAYHLSEIQGSSIPST----VNNNRSNFYT 208
                    L     ++IPS     +N+N S+  T
Sbjct:   187 TKPNK--LKSPNQTTIPSQTVIPINDNMSSTQT 217

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2195528 AtMYB103 "myb domain protein 103" [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 2.0e-51, Sum P(2) = 2.0e-51
 Identities = 88/128 (68%), Positives = 108/128 (84%)

Query:     1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60
             MG HSCC +QK+++GLWSPEEDEKL+R+IT +G+GCWS VP++AGLQRCGKSCRLRWINY
Sbjct:     1 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINY 60

Query:    61 LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120
             LRPD++RG FS +EE LII LH V+GNRW+ IA+ LPGRTDNEIKN WNS +KKK+R+  
Sbjct:    61 LRPDIRRGRFSPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPH 120

Query:   121 IDPVTHKP 128
                  H+P
Sbjct:   121 HHYSRHQP 128

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

GO:1901430 "positive regulation of syringal lignin biosynthetic process" evidence=IMP

TAIR|locus:2149000 MYB9 "myb domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 507 (183.5 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
 Identities = 102/208 (49%), Positives = 134/208 (64%)

Query:     1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60
             MGR  CC +  L+KG W+ EED+KL+ HI K+GHG W ++PKQAGL RCGKSCRLRW NY
Sbjct:     1 MGRSPCCDENGLKKGPWTQEEDDKLIDHIQKHGHGSWRALPKQAGLNRCGKSCRLRWTNY 60

Query:    61 LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120
             LRPD+KRG F+++EE  II LH++LGN+WS IA  LPGRTDNEIKN WN+ L+KKL Q G
Sbjct:    61 LRPDIKRGNFTEEEEQTIINLHSLLGNKWSSIAGNLPGRTDNEIKNYWNTHLRKKLLQMG 120

Query:   121 IDPVTHKPLSEVENGEDKNQTTNSQDKVSGVSGELNL-LNTELTAKHGTTAALNEQKPTS 179
             IDPVTH+P ++  N              +  +  LNL  N +L A   TT A  +   T 
Sbjct:   121 IDPVTHRPRTDHLN---VLAALPQLIAAANFNSLLNLNQNVQLDA---TTLAKAQLLHTM 174

Query:   180 VTAQAYHLSEIQGSSIPSTVNNNRSNFY 207
             +   + + +    S   ST+ N+ +N +
Sbjct:   175 IQVLSTNNNTTNPSFSSSTMQNSNTNLF 202

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2121259 MYB4 "myb domain protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 498 (180.4 bits), Expect = 4.2e-51, Sum P(2) = 4.2e-51
 Identities = 85/141 (60%), Positives = 108/141 (76%)

Query:     1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60
             MGR  CC K    KG W+ EEDE+L+ +I  +G GCW S+PK AGL RCGKSCRLRWINY
Sbjct:     1 MGRSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query:    61 LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120
             LRPDLKRG F+++E+ LII+LH++LGN+WS IA +LPGRTDNEIKN WN+ +++KL  RG
Sbjct:    61 LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRG 120

Query:   121 IDPVTHKPLSEVENGEDKNQT 141
             IDP +H+P+ E    +D   T
Sbjct:   121 IDPTSHRPIQESSASQDSKPT 141

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0010224 "response to UV-B" evidence=IEP;IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:2000762 "regulation of phenylpropanoid metabolic process" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

TAIR|locus:2131576 MYB32 "myb domain protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 86/146 (58%), Positives = 117/146 (80%)

Query:     1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60
             MGR  CC K    KG W+ EED+KL+ +I  +G GCW S+P+ AGLQRCGKSCRLRWINY
Sbjct:     1 MGRSPCCEKDHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINY 60

Query:    61 LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120
             LRPDLKRG F+ +E++LII+LH++LGN+WS IA +LPGRTDNEIKN WN+ +K+KL ++G
Sbjct:    61 LRPDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKLLRKG 120

Query:   121 IDPVTHKPLSEVENGEDKNQTTNSQD 146
             IDP TH+P++E +  +D + ++ ++D
Sbjct:   121 IDPATHRPINETKTSQDSSDSSKTED 146

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

TAIR|locus:2102152 MYB106 "myb domain protein 106" [Arabidopsis thaliana (taxid:3702)]

 Score = 493 (178.6 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
 Identities = 91/142 (64%), Positives = 109/142 (76%)

Query:     6 CCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDL 65
             CC K  L+KG W+PEED+KLL +I ++GHG W S+P++AGLQRCGKSCRLRW NYLRPD+
Sbjct:    49 CCDKAGLKKGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLQRCGKSCRLRWTNYLRPDI 108

Query:    66 KRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVT 125
             KRG F+ QEE  II+LHA+LGNRWS IA  LP RTDNEIKN WN+ LKK+L + GIDPVT
Sbjct:   109 KRGKFTVQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLIKMGIDPVT 168

Query:   126 HKPLSEV---ENGEDKNQTTNS 144
             HK  +E      G+ KN  T S
Sbjct:   169 HKHKNETLSSSTGQSKNAATLS 190

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0010091 "trichome branching" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00028224001 SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (451 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	446
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	0.0
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	1e-52
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	5e-15
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	3e-14
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	5e-12
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	8e-12
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-11
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	6e-11
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	5e-10
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-08
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	4e-05
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	0.002

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  618 bits (1594), Expect = 0.0
 Identities = 311/464 (67%), Positives = 346/464 (74%), Gaps = 23/464 (4%)

Query: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60
           MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY
Sbjct: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60

Query: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120
           LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG
Sbjct: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120

Query: 121 IDPVTHKPLSEVENGEDKNQTT--NSQDKVSGVSGELNLLNTELTAKHGTTAALNEQKPT 178
           IDP THKPLSEVENGEDKN  T   S    S VS ELNLL  +  +K             
Sbjct: 121 IDPNTHKPLSEVENGEDKNPPTDDKSDKASSVVSNELNLLKAD-NSKPLAALQEKRSSSI 179

Query: 179 SVTAQAYHLSEIQGSSIPSTVNNNRSN-----------FYTHRFASSNQESSSITNSQPS 227
           S       +     S I ++ NNN SN           F+  RF +S++ S+  T+ +PS
Sbjct: 180 SPAGYQLEVESSSSSKINNSNNNNHSNSNLMTPTPNKDFFLDRFTTSHESST--TSCRPS 237

Query: 228 DFVGHFPLQQLNCASNARLSTAASNSPLWFMQTSKSFDINSQFSSNAMPTILPPVSSSSL 287
           D VGHFP QQLN ASNARLST   N  LWF Q SKSF++NS+FSS+  P+ILPP  +SS 
Sbjct: 238 DLVGHFPFQQLNYASNARLST-NPNPTLWFSQNSKSFEMNSEFSSSMTPSILPPSVTSSF 296

Query: 288 FSAPMSYKTSVTLPSDNHSIPSFTVNGSRYWEAGGASN---SNSVSSSSTELQSTSSFLE 344
              PMSYK S++LPSDN SIPSFTVNG R WEAG  SN   S++ SSSS ELQS SSF E
Sbjct: 297 LPTPMSYKPSISLPSDNPSIPSFTVNGVRNWEAGAFSNNSNSSNGSSSSIELQSNSSFFE 356

Query: 345 SSIFPWGLADCSSSEKEGQINLIDSHPDDVKWPEYFQTPSLLMAAALQNQTSQSLYNEIK 404
           +SIF WGLADC  S+KE QI+L++S P+D+KWPEY Q P  LMAA LQNQT Q LYNEIK
Sbjct: 357 NSIFSWGLADCGKSDKEAQIHLLESDPEDIKWPEYLQNP-FLMAATLQNQTPQPLYNEIK 415

Query: 405 SETHILTDSSSGIWPQNQQQ--PLQNSDICAKEIQRLTATYGHI 446
            ETH +T+ SS +WP NQQQ  PLQN DI  K++QRLTA +G I
Sbjct: 416 PETHFITEGSSTMWPHNQQQQEPLQNPDIYTKDLQRLTAAFGQI 459

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  176 bits (448), Expect = 1e-52
 Identities = 83/145 (57%), Positives = 105/145 (72%), Gaps = 7/145 (4%)

Query: 6   CCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDL 65
           CC K  +++G W+ EEDE L+  I K G G W S+PK+AGL RCGKSCRLRW+NYLRP +
Sbjct: 17  CCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSV 76

Query: 66  KRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVT 125
           KRG  +  EE+LI+ LH +LGNRWS IA ++PGRTDNEIKN WN+ L+KKL ++GIDP T
Sbjct: 77  KRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQT 136

Query: 126 HKPLSEVENGEDKNQTTNSQDKVSG 150
           HKPL       D N     +++VSG
Sbjct: 137 HKPL-------DANNIHKPEEEVSG 154

Length = 249

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 68.3 bits (168), Expect = 5e-15
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61
          +G W+PEEDE L+  + K+G+G WS + K     R    C+ RW NYL
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPG-RTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 74.4 bits (183), Expect = 3e-14
 Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 1/106 (0%)

Query: 8   YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKR 67
            + K + G W   EDE L   + K G   WS V         GK    RW N+L P LK+
Sbjct: 14  MQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKK 72

Query: 68  GTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLK 113
             +S++E+  +I+L   LG +WS IA     RT  +    + + L+
Sbjct: 73  KNWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLE 118

Length = 512

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 60.2 bits (147), Expect = 5e-12
 Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 67  RGTFSQQEENLIIELHAVLGNR-WSQIAAQLPGRTDNEIKNLWNSCL 112
           RG ++ +E+ L+IE     GN  WS+IA  LPGRTDN+ KN WN+ L
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 59.5 bits (145), Expect = 8e-12
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRP 63
          KG W+ EEDE L+  + KYG   W  + K+    R  + CR RW N L+P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 58.0 bits (141), Expect = 2e-11
 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 17 WSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61
          W+ EEDE LL  + KYG   W  + K+    R  K CR RW N L
Sbjct: 2  WTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 57.3 bits (139), Expect = 6e-11
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 3/59 (5%)

Query: 17 WSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEE 75
          W+ EEDEKLL+ + KYG+  W  + ++  L R   +CR RW   LRP   RG ++++E+
Sbjct: 1  WTEEEDEKLLKLVEKYGND-WKQIAEE--LGRTPSACRDRWRRKLRPKRSRGPWTKEED 56

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 54.2 bits (131), Expect = 5e-10
 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 67  RGTFSQQEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCLKK 114
           +G ++++E+ L+IEL    G N W +IA +LPGRT  + +  W + LK 
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 69  TFSQQEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWN 109
            ++++E+ L++E     G N W +IA +LPGRT  + +  W 
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWR 42

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 70  FSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQ 118
           ++++E+  +++L    GN W QIA +L GRT +  ++ W   L+ K  +
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKRSR 48

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 17 WSPEEDEKLLRHITKYGHGCWS 38
          W+ EEDE L+  + KYG G W+
Sbjct: 3  WTDEEDEALVEGVEKYGVGNWA 24

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	446
PLN03091	459	hypothetical protein; Provisional	100.0
PLN03212	249	Transcription repressor MYB5; Provisional	100.0
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.78
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.72
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.59
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.57
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.52
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.42
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.32
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.31
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.3
PLN03212	249	Transcription repressor MYB5; Provisional	99.29
PLN03091	459	hypothetical protein; Provisional	99.18
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.15
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.14
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.01
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.97
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.81
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.81
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.09
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.7
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	97.55
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.51
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.39
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.38
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.01
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.86
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	96.84
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.77
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.56
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.37
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.32
PRK13923	170	putative spore coat protein regulator protein YlbO	96.19
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.15
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	95.6
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	95.44
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.34
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.21
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	95.18
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.03
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	94.76
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	93.74
PRK13923	170	putative spore coat protein regulator protein YlbO	93.49
KOG4282	345	consensus Transcription factor GT-2 and related pr	93.14
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	91.09
KOG2656	445	consensus DNA methyltransferase 1-associated prote	90.22
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	89.22
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	88.98
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	85.26
KOG4167	907	consensus Predicted DNA-binding protein, contains	85.18
KOG4167	907	consensus Predicted DNA-binding protein, contains	82.75
smart00595	89	MADF subfamily of SANT domain.	80.74

>PLN03091 hypothetical protein; Provisional

Probab=100.00  E-value=2.3e-129  Score=994.03  Aligned_cols=437  Identities=70%  Similarity=1.126  Sum_probs=403.0

Q ss_pred             CCCCcccccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCccCccCHHHHHHHHH
Q 013300            1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE   80 (446)
Q Consensus         1 mgR~~~~~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kLle   80 (446)
                      |||+.||+|++++||+||+|||++|+++|++||.++|..||+.++.+|+++|||+||.+||+|.+++++||+|||++|++
T Consensus         1 mgr~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLe   80 (459)
T PLN03091          1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE   80 (459)
T ss_pred             CCCCccCcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998778999999999999999999999999999999999


Q ss_pred             HHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhHHHHHhcCCCCCCCCCCcccccCCCCCCCCC--CCCCCCCccCccccc
Q 013300           81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVENGEDKNQTTN--SQDKVSGVSGELNLL  158 (446)
Q Consensus        81 lv~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkkklr~~g~~p~~~k~l~ele~k~~k~~~~~--~~~~s~~~~~el~ll  158 (446)
                      ++++||++|++||++|+|||+++||+||+.++|++++++++++.+++++.+.++.+++.....  ....+..+..|++++
T Consensus        81 L~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~t~kpl~e~E~~~d~~p~~~~~~~~~s~~~~~el~~~  160 (459)
T PLN03091         81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENGEDKNPPTDDKSDKASSVVSNELNLL  160 (459)
T ss_pred             HHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccccccccCCccccccccchhhhhhhhhhh
Confidence            999999999999999999999999999999999999999999999999999998887765332  223345788999999


Q ss_pred             chhhhcccCcccccccCCCCccccccccccccccCCCC-------------C-CCCCCCCCccccccccccCCCCCccCC
Q 013300          159 NTELTAKHGTTAALNEQKPTSVTAQAYHLSEIQGSSIP-------------S-TVNNNRSNFYTHRFASSNQESSSITNS  224 (446)
Q Consensus       159 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~f~~~~~~~~~~~~~  224 (446)
                      ..+.+ +|.++.  -..++++|++.+|. ++++.++++             + +...+++|||||||+.++|+ + +++|
T Consensus       161 ~~~~~-~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fld~~~~~~~~-~-~~~c  234 (459)
T PLN03091        161 KADNS-KPLAAL--QEKRSSSISPAGYQ-LEVESSSSSKINNSNNNNHSNSNLMTPTPNKDFFLDRFTTSHES-S-TTSC  234 (459)
T ss_pred             hhhcc-Cccccc--hhcccccccccccc-cccccccccccccccccCCccccccCCCCcchhhhhhhcccccc-C-ccCC
Confidence            99999 774432  24577888998887 666665444             3 66789999999999986664 3 8999


Q ss_pred             CCCCCcCCCCCcccccCCCCccCCCCCCCCceecccCCCccccccCCCCCCCccC-CCCCCCcccCCCCCCcccCCCCCC
Q 013300          225 QPSDFVGHFPLQQLNCASNARLSTAASNSPLWFMQTSKSFDINSQFSSNAMPTIL-PPVSSSSLFSAPMSYKTSVTLPSD  303 (446)
Q Consensus       225 ~ps~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~f~~~~~~~il-p~vs~s~l~~~~~~~k~~~~~p~d  303 (446)
                      +|||+++|||||+|||.++++++.+++ ++|||+|++++||||+||+++||++|| |+|++|+| +|+|||||+|+||+|
T Consensus       235 ~ps~~~~~f~~qql~y~~~~~~s~~~~-~~~~~~~~~~~~~~~~e~~~s~~~~~~~p~~~~s~~-~~~~~~k~~~~~p~~  312 (459)
T PLN03091        235 RPSDLVGHFPFQQLNYASNARLSTNPN-PTLWFSQNSKSFEMNSEFSSSMTPSILPPSVTSSFL-PTPMSYKPSISLPSD  312 (459)
T ss_pred             CCCccccccchhhcccccccccCcCCC-cceeeccCCCcccccccccccccccccCCCcccccc-cCccccccccCCCCC
Confidence            999999999999999999999999998 999999999999999999999999988 88999998 999999999999999


Q ss_pred             CCCCCccccCCccccccCCCCCCC---CCCCCccccccccccccCCCCCCccccCCCcccccccccCCCCCCCCCCcccc
Q 013300          304 NHSIPSFTVNGSRYWEAGGASNSN---SVSSSSTELQSTSSFLESSIFPWGLADCSSSEKEGQINLIDSHPDDVKWPEYF  380 (446)
Q Consensus       304 n~~~~~~~~~~~~~we~~~~~n~~---~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~e~~kw~e~~  380 (446)
                      |+++++|+|+|++|||+++++|++   ++|++|+|||++|+||||++|+||||||++++||+|+|+++.++|||||+|||
T Consensus       313 n~s~~s~~~~~~~~we~~~~sn~~~~~~~~~~s~e~qs~ss~f~n~~fsw~~~d~~~s~k~~q~h~~~~~~eeiKW~eyl  392 (459)
T PLN03091        313 NPSIPSFTVNGVRNWEAGAFSNNSNSSNGSSSSIELQSNSSFFENSIFSWGLADCGKSDKEAQIHLLESDPEDIKWPEYL  392 (459)
T ss_pred             CCCCCCcccCCccccccCCCCCCCCCCCCCCccccccccchhhccCcccccccccccchhhhhhhccccchhhcchHHHh
Confidence            999999999999999999999883   67778899999999999999999999999888999999999999999999999


Q ss_pred             cChhHHHHHHhhcccchhhhhhhccccccccCCCccccc--ccccCcccCcchhhhhhhHHHhhcCCC
Q 013300          381 QTPSLLMAAALQNQTSQSLYNEIKSETHILTDSSSGIWP--QNQQQPLQNSDICAKEIQRLTATYGHI  446 (446)
Q Consensus       381 ~~~~~~~~~~~q~~~~~~~~~~~k~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~kd~qr~~~~~g~~  446 (446)
                      |+|| |||+|+|||++|+||+|||+||||++||++++|+  ||||+++|++|||+||||||+|+||||
T Consensus       393 ~~~~-~~~~~~q~q~~q~ly~~ik~et~~~~~~~~~~w~~~q~~q~~~~~~d~~~kdlqr~~~~fg~~  459 (459)
T PLN03091        393 QNPF-LMAATLQNQTPQPLYNEIKPETHFITEGSSTMWPHNQQQQEPLQNPDIYTKDLQRLTAAFGQI  459 (459)
T ss_pred             cchh-hhhhhhhhcCchhhhhhccchhhccccccccccccccccccccccccccchHHHHHHHhhccC
Confidence            9999 9999999999999999999999999999999996  556777899999999999999999997

>PLN03212 Transcription repressor MYB5; Provisional

Probab=100.00  E-value=1.7e-34  Score=279.29  Aligned_cols=130  Identities=60%  Similarity=1.134  Sum_probs=124.3

Q ss_pred             CCcccccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCccCccCHHHHHHHHHHH
Q 013300            3 RHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELH   82 (446)
Q Consensus         3 R~~~~~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kLlelv   82 (446)
                      |..||.|++++|++||+|||++|+++|++||..+|..||+.++.+|+++|||+||.++|+|.+++++||+|||++|++++
T Consensus        14 ~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~   93 (249)
T PLN03212         14 TTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLH   93 (249)
T ss_pred             CCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999866899999999999999999999999999999999999


Q ss_pred             HHhCCChHHHhhhCCCCCHHHHHHHHHHHhHHHHHhcCCCCCCCCCCccc
Q 013300           83 AVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEV  132 (446)
Q Consensus        83 ~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkkklr~~g~~p~~~k~l~el  132 (446)
                      .+||++|+.||+.|+|||+++|||||+.++++++.+.++.+.+++++...
T Consensus        94 ~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~kp~~~~  143 (249)
T PLN03212         94 RLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLDAN  143 (249)
T ss_pred             HhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCCCCCCcc
Confidence            99999999999999999999999999999999999999999988876533

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=8.2e-33  Score=266.69  Aligned_cols=119  Identities=64%  Similarity=1.121  Sum_probs=111.4

Q ss_pred             cCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCccCccCHHHHHHHHHHHHHhCCC
Q 013300            9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR   88 (446)
Q Consensus         9 k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kLlelv~~yGnk   88 (446)
                      |+.+.||+||+|||++|+++|++||.++|..||+.++.+|++++||.||.|||+|++++|.||+|||++|+++|+.||++
T Consensus         4 k~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNr   83 (238)
T KOG0048|consen    4 NPELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNR   83 (238)
T ss_pred             CccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcH
Confidence            34466899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhhCCCCCHHHHHHHHHHHhHHHHHhcCCCCCCCC
Q 013300           89 WSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHK  127 (446)
Q Consensus        89 WskIAk~LpgRT~~qcKnRW~~iLkkklr~~g~~p~~~k  127 (446)
                      |+.||++|||||++.|||+|+..+|++++..+.++....
T Consensus        84 Ws~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~~~~~~~~  122 (238)
T KOG0048|consen   84 WSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMGIDPSTHR  122 (238)
T ss_pred             HHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcCCCCCccc
Confidence            999999999999999999999999999998875554433

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.78  E-value=1.8e-19  Score=191.70  Aligned_cols=108  Identities=24%  Similarity=0.489  Sum_probs=102.4

Q ss_pred             CCCCcccccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCccCccCHHHHHHHHH
Q 013300            1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE   80 (446)
Q Consensus         1 mgR~~~~~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kLle   80 (446)
                      ||||.+.+.|.+++|+||++||-+|+.+|.+||..+|.+|-..++ +|+..|||+||.+.|....|.+.|+-.||+.|++
T Consensus       347 I~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vP-nRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~  425 (939)
T KOG0049|consen  347 ITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVP-NRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLY  425 (939)
T ss_pred             hhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcC-CccHHHHHHHHHHHHHHhhccCceeecchHHHHH
Confidence            689999999999999999999999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             HHHHhC-CChHHHhhhCCCCCHHHHHHHHH
Q 013300           81 LHAVLG-NRWSQIAAQLPGRTDNEIKNLWN  109 (446)
Q Consensus        81 lv~~yG-nkWskIAk~LpgRT~~qcKnRW~  109 (446)
                      +|.+|| ++|.+||.+||.||..|.+.|=.
T Consensus       426 ~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~  455 (939)
T KOG0049|consen  426 AVKVYGKGNWAKCAMLLPKKTSRQLRRRRL  455 (939)
T ss_pred             HHHHHccchHHHHHHHccccchhHHHHHHH
Confidence            999999 89999999999999966544433

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.72  E-value=3.8e-18  Score=181.75  Aligned_cols=130  Identities=22%  Similarity=0.385  Sum_probs=115.3

Q ss_pred             CcccccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccc-----------------------------
Q 013300            4 HSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCR-----------------------------   54 (446)
Q Consensus         4 ~~~~~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR-----------------------------   54 (446)
                      |.+++.|+++|..|+.|||++|+.+...+|.-+|..||..++..|+..||.                             
T Consensus       243 W~n~l~P~~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~kL~alV~~  322 (939)
T KOG0049|consen  243 WYNELNPKWNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDTKLIALVKI  322 (939)
T ss_pred             HhhhcCCccchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence            677889999999999999999999999888888888888887557777775                             


Q ss_pred             -------------------------hhhhcccCCCCccCccCHHHHHHHHHHHHHhCC-ChHHHhhhCCCCCHHHHHHHH
Q 013300           55 -------------------------LRWINYLRPDLKRGTFSQQEENLIIELHAVLGN-RWSQIAAQLPGRTDNEIKNLW  108 (446)
Q Consensus        55 -------------------------~RW~n~L~P~lkrg~WT~EED~kLlelv~~yGn-kWskIAk~LpgRT~~qcKnRW  108 (446)
                                               .||.+.|+|.+++|+||.+||.+|+.+|.+||. .|.+|-..+|||++.|||.||
T Consensus       323 ~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY  402 (939)
T KOG0049|consen  323 TSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERY  402 (939)
T ss_pred             hhccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHH
Confidence                                     577788899999999999999999999999995 599999999999999999999


Q ss_pred             HHHhHHHHHhcCCCCCCCCCCcccc
Q 013300          109 NSCLKKKLRQRGIDPVTHKPLSEVE  133 (446)
Q Consensus       109 ~~iLkkklr~~g~~p~~~k~l~ele  133 (446)
                      .+.|....+...|.-.++..|.+..
T Consensus       403 ~nvL~~s~K~~rW~l~edeqL~~~V  427 (939)
T KOG0049|consen  403 TNVLNRSAKVERWTLVEDEQLLYAV  427 (939)
T ss_pred             HHHHHHhhccCceeecchHHHHHHH
Confidence            9999999999999888876665444

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.59  E-value=8e-16  Score=118.24  Aligned_cols=60  Identities=42%  Similarity=0.908  Sum_probs=55.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCccCccCHHHHHHH
Q 013300           17 WSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLI   78 (446)
Q Consensus        17 WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kL   78 (446)
                      ||+|||++|+++|.+|| .+|..||+.|+ .|++.+|+.||.++|.+.+++++||.+||.+|
T Consensus         1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYG-NDWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHT-S-HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHC-cCHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            99999999999999999 67999999998 89999999999999999999999999999987

...

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=1.2e-15  Score=159.90  Aligned_cols=148  Identities=24%  Similarity=0.480  Sum_probs=123.1

Q ss_pred             CCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCccCccCHHHHHHHHHHHHHhCCChHH
Q 013300           12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQ   91 (446)
Q Consensus        12 lkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kLlelv~~yGnkWsk   91 (446)
                      ++.|.|+-.||+.|..+|.+||.+.|.+|++.+. ..+++||+.||..+|+|.+++..|+.|||++||.+.+.+...|..
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~-~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrt   83 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLN-RKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRT   83 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHh-hcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccch
Confidence            4678999999999999999999999999999998 899999999999999999999999999999999999999999999


Q ss_pred             HhhhCCCCCHHHHHHHHHHHhHHHHHhcC-CCCCCCCCCcccccCCCCCCCCCCCCCCCCccCcccccchh
Q 013300           92 IAAQLPGRTDNEIKNLWNSCLKKKLRQRG-IDPVTHKPLSEVENGEDKNQTTNSQDKVSGVSGELNLLNTE  161 (446)
Q Consensus        92 IAk~LpgRT~~qcKnRW~~iLkkklr~~g-~~p~~~k~l~ele~k~~k~~~~~~~~~s~~~~~el~ll~~~  161 (446)
                      ||..| ||+.+||-.||..++........ -++..+..|...+............+.......|+.++..+
T Consensus        84 Ia~i~-gr~~~qc~eRy~~ll~~~~s~~~~~~~~~D~rLk~gE~ePn~e~~~aRpd~~dmdEde~eMl~ea  153 (617)
T KOG0050|consen   84 IADIM-GRTSQQCLERYNNLLDVYVSYHYHSEPYIDAKLKEGEIEPNQETNPARPDGFDMDEDEGEMLSEA  153 (617)
T ss_pred             HHHHh-hhhHHHHHHHHHHHHHHHHhhhcccccccccccCCCcCCCccccccccCCcccchHHHHHHHHHH
Confidence            99999 99999999999999987765443 34555555666665555555555555555555555554443

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.52  E-value=9.5e-15  Score=154.85  Aligned_cols=109  Identities=31%  Similarity=0.515  Sum_probs=104.0

Q ss_pred             ccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCccCccCHHHHHHHHHHHHHhCC
Q 013300            8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN   87 (446)
Q Consensus         8 ~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kLlelv~~yGn   87 (446)
                      +..+++.|.|+..||+.|+.+|+++|.++|..||..+. .|+++||+.||.++++|.++++.|+.|||+.|+.+..++|.
T Consensus        14 ~~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~   92 (512)
T COG5147          14 MQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT   92 (512)
T ss_pred             ccceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCc
Confidence            45678899999999999999999999999999999999 69999999999999999999999999999999999999999


Q ss_pred             ChHHHhhhCCCCCHHHHHHHHHHHhHHHHH
Q 013300           88 RWSQIAAQLPGRTDNEIKNLWNSCLKKKLR  117 (446)
Q Consensus        88 kWskIAk~LpgRT~~qcKnRW~~iLkkklr  117 (446)
                      +|+.||..+++|+..+|.+||...+.....
T Consensus        93 ~wstia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          93 QWSTIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhhhccccCccchHHHHHHHHHHhhhhhc
Confidence            999999999999999999999988877665

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.42  E-value=1.3e-13  Score=147.88  Aligned_cols=105  Identities=26%  Similarity=0.556  Sum_probs=94.6

Q ss_pred             CccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCC--ccCccCHHHHHHHHHHHH-------
Q 013300           13 RKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDL--KRGTFSQQEENLIIELHA-------   83 (446)
Q Consensus        13 kKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~l--krg~WT~EED~kLlelv~-------   83 (446)
                      .+|+||+||++.|..+|.++| ++|.+|++.|+  |.+..||+||.+|..+.-  +++.||.||+++|+.+|.       
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~  459 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL  459 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence            799999999999999999999 77999999997  999999999999999884  899999999999999995       


Q ss_pred             Hh-------C------------CChHHHhhhCCCCCHHHHHHHHHHHhHHHHHhcC
Q 013300           84 VL-------G------------NRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG  120 (446)
Q Consensus        84 ~y-------G------------nkWskIAk~LpgRT~~qcKnRW~~iLkkklr~~g  120 (446)
                      ++       |            =+|+.|++.+..|+..|||.+|+.++........
T Consensus       460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~  515 (607)
T KOG0051|consen  460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKR  515 (607)
T ss_pred             cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhcc
Confidence            33       1            1499999999999999999999999987765544

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.32  E-value=2.2e-12  Score=95.84  Aligned_cols=46  Identities=28%  Similarity=0.683  Sum_probs=41.7

Q ss_pred             cCccCHHHHHHHHHHHHHhCCC-hHHHhhhCC-CCCHHHHHHHHHHHh
Q 013300           67 RGTFSQQEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNSCL  112 (446)
Q Consensus        67 rg~WT~EED~kLlelv~~yGnk-WskIAk~Lp-gRT~~qcKnRW~~iL  112 (446)
                      |++||+|||++|+++|.+||.+ |..||..|+ +||..||++||+.++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5899999999999999999988 999999999 999999999998764

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.31  E-value=5.1e-13  Score=99.22  Aligned_cols=48  Identities=44%  Similarity=0.832  Sum_probs=43.4

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhccc
Q 013300           14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL   61 (446)
Q Consensus        14 KG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L   61 (446)
                      |++||+|||++|+++|.+||.++|..||..|+.+|++.||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            689999999999999999997779999999998999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.30  E-value=6e-13  Score=102.29  Aligned_cols=55  Identities=29%  Similarity=0.593  Sum_probs=46.0

Q ss_pred             cCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhHHHHHhcCCCCC
Q 013300           70 FSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPV  124 (446)
Q Consensus        70 WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkkklr~~g~~p~  124 (446)
                      ||+|||++|+++|.+||++|.+||+.|+.||..+|++||+..|++.+....|++.
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~e   55 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKE   55 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHH
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHH
Confidence            9999999999999999999999999997799999999999977766666666543

...

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.29  E-value=1.6e-12  Score=127.04  Aligned_cols=81  Identities=16%  Similarity=0.414  Sum_probs=71.1

Q ss_pred             ccCccccchhhhcccCCCCccCccCHHHHHHHHHHHHHhC-CChHHHhhhC-CCCCHHHHHHHHHHHhHHHHHhcCCCCC
Q 013300           47 QRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLG-NRWSQIAAQL-PGRTDNEIKNLWNSCLKKKLRQRGIDPV  124 (446)
Q Consensus        47 gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kLlelv~~yG-nkWskIAk~L-pgRT~~qcKnRW~~iLkkklr~~g~~p~  124 (446)
                      +|++.-|-.       +.+++++||+|||++|+++|++|| .+|..||+.+ ++|+..|||.||.+.|++.+++..|+.+
T Consensus        12 ~~~~pcc~K-------~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~E   84 (249)
T PLN03212         12 KKTTPCCTK-------MGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSD   84 (249)
T ss_pred             CCCCCCccc-------CCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChH
Confidence            566554533       478999999999999999999999 6899999998 5999999999999999999999999999


Q ss_pred             CCCCCccccc
Q 013300          125 THKPLSEVEN  134 (446)
Q Consensus       125 ~~k~l~ele~  134 (446)
                      ++..|.++..
T Consensus        85 ED~lLlel~~   94 (249)
T PLN03212         85 EEDLILRLHR   94 (249)
T ss_pred             HHHHHHHHHH
Confidence            9887776653

>PLN03091 hypothetical protein; Provisional

Probab=99.18  E-value=5.9e-12  Score=131.04  Aligned_cols=72  Identities=18%  Similarity=0.385  Sum_probs=66.0

Q ss_pred             CCCccCccCHHHHHHHHHHHHHhC-CChHHHhhhCC-CCCHHHHHHHHHHHhHHHHHhcCCCCCCCCCCccccc
Q 013300           63 PDLKRGTFSQQEENLIIELHAVLG-NRWSQIAAQLP-GRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVEN  134 (446)
Q Consensus        63 P~lkrg~WT~EED~kLlelv~~yG-nkWskIAk~Lp-gRT~~qcKnRW~~iLkkklr~~g~~p~~~k~l~ele~  134 (446)
                      ..+++++||+|||++|+++|++|| .+|..||+.++ +|+++|||.||.+.|++.+++..|+++++..|.++..
T Consensus        10 qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k   83 (459)
T PLN03091         10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHA   83 (459)
T ss_pred             CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHH
Confidence            578999999999999999999999 57999999984 9999999999999999999999999999987776554

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.15  E-value=8e-12  Score=121.14  Aligned_cols=70  Identities=14%  Similarity=0.288  Sum_probs=64.5

Q ss_pred             CCccCccCHHHHHHHHHHHHHhC-CChHHHhhhCC-CCCHHHHHHHHHHHhHHHHHhcCCCCCCCCCCcccc
Q 013300           64 DLKRGTFSQQEENLIIELHAVLG-NRWSQIAAQLP-GRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVE  133 (446)
Q Consensus        64 ~lkrg~WT~EED~kLlelv~~yG-nkWskIAk~Lp-gRT~~qcKnRW~~iLkkklr~~g~~p~~~k~l~ele  133 (446)
                      .+.+|+||.|||++|+++|++|| ++|..|++.++ +|+.++||-||.+.|++.++++.|+++++..+.++-
T Consensus         6 ~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH   77 (238)
T KOG0048|consen    6 ELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLH   77 (238)
T ss_pred             cccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHH
Confidence            44579999999999999999999 67999999999 999999999999999999999999999988776654

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.14  E-value=8.5e-11  Score=83.96  Aligned_cols=47  Identities=43%  Similarity=0.894  Sum_probs=44.2

Q ss_pred             cCccCHHHHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHHHHhH
Q 013300           67 RGTFSQQEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCLK  113 (446)
Q Consensus        67 rg~WT~EED~kLlelv~~yG-nkWskIAk~LpgRT~~qcKnRW~~iLk  113 (446)
                      +++||++||.+|+.++.+|| .+|..||..|++||..+|++||+.+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999997664

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.01  E-value=7.3e-10  Score=78.14  Aligned_cols=43  Identities=33%  Similarity=0.771  Sum_probs=41.3

Q ss_pred             ccCHHHHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHHHH
Q 013300           69 TFSQQEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSC  111 (446)
Q Consensus        69 ~WT~EED~kLlelv~~yG-nkWskIAk~LpgRT~~qcKnRW~~i  111 (446)
                      +||+|||.+|+.++.+|| .+|..||+.|++|+..+|++||..+
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 9999999999999999999999865

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.97  E-value=3.1e-10  Score=81.07  Aligned_cols=48  Identities=42%  Similarity=0.875  Sum_probs=44.6

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccC
Q 013300           14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLR   62 (446)
Q Consensus        14 KG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~   62 (446)
                      ++.||++||++|+.++.+||..+|..||..++ +|++.+|+.||.+.+.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHHcC
Confidence            47899999999999999999778999999999 9999999999998764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.81  E-value=2e-09  Score=75.88  Aligned_cols=44  Identities=43%  Similarity=0.853  Sum_probs=41.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcc
Q 013300           16 LWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY   60 (446)
Q Consensus        16 ~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~   60 (446)
                      +||++||++|+.++.+||..+|..||..++ +|++.+|+.||.++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~-~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC-CCCHHHHHHHHHHh
Confidence            599999999999999999778999999999 89999999999765

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.81  E-value=2.5e-09  Score=115.43  Aligned_cols=118  Identities=24%  Similarity=0.337  Sum_probs=94.0

Q ss_pred             CCccCCCHHHHHHHHHHHHHh----CC-------------------CCccccccccCcccCccccch---hhhcccCCCC
Q 013300           12 LRKGLWSPEEDEKLLRHITKY----GH-------------------GCWSSVPKQAGLQRCGKSCRL---RWINYLRPDL   65 (446)
Q Consensus        12 lkKG~WT~EEDe~LlelV~ky----G~-------------------~nW~kIAk~m~~gRt~kQCR~---RW~n~L~P~l   65 (446)
                      ++-+.|+.+||+.|-..|..|    |-                   +.|..|-..++ .|+...+..   |=.+.+.+  
T Consensus       306 ~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp-~R~~~siy~~~rR~y~~FE~--  382 (607)
T KOG0051|consen  306 INLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLP-YRDRKSIYHHLRRAYTPFEN--  382 (607)
T ss_pred             hhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcC-cccchhHHHHHHhcCCcccc--
Confidence            344899999999999999877    11                   12677778888 588888876   33333443  


Q ss_pred             ccCccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhHHH--HHhcCCCCCCCCCCcccc
Q 013300           66 KRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKK--LRQRGIDPVTHKPLSEVE  133 (446)
Q Consensus        66 krg~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkkk--lr~~g~~p~~~k~l~ele  133 (446)
                      ++|.||+||++.|..+|.++|+.|..|++.| ||.+..||+||+++++..  .....|+..+...|..+.
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V  451 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTV  451 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHH
Confidence            8999999999999999999999999999999 999999999999988776  355567666666665554

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.09  E-value=1.7e-06  Score=92.76  Aligned_cols=108  Identities=19%  Similarity=0.220  Sum_probs=95.2

Q ss_pred             CCcccccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCccCccCHHHHHHHHHHH
Q 013300            3 RHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELH   82 (446)
Q Consensus         3 R~~~~~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kLlelv   82 (446)
                      ||...+.+.++++.|+.|||+.|+.+-..+|.. |..||..++ +|+..+|.+||.+.+.+... ..|+..++...+..+
T Consensus        61 rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~-wstia~~~d-~rt~~~~~ery~~~~~~~~s-~~~s~~~~~~~f~k~  137 (512)
T COG5147          61 RWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ-WSTIADYKD-RRTAQQCVERYVNTLEDLSS-THDSKLQRRNEFDKI  137 (512)
T ss_pred             hhhhhhchhcccccccHHHHHHHHHHHHhcCch-hhhhccccC-ccchHHHHHHHHHHhhhhhc-cccccccchhhcccc
Confidence            777889999999999999999999999999965 999999999 99999999999999987655 889999999888889


Q ss_pred             HHhCCChHHHhhhCCCCCHHHHHHHHHHHhH
Q 013300           83 AVLGNRWSQIAAQLPGRTDNEIKNLWNSCLK  113 (446)
Q Consensus        83 ~~yGnkWskIAk~LpgRT~~qcKnRW~~iLk  113 (446)
                      ..|+..|.++......+-..-|.+++..+..
T Consensus       138 d~f~~~~~~~~~~~~~~~~~~~~N~~~~~~~  168 (512)
T COG5147         138 DPFNENSARRPDIYEDELLEREVNREASYRL  168 (512)
T ss_pred             CchhhhhhhhhhhhhcccchhhhhHHHHHHH
Confidence            9999889888887777777778887765443

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.70  E-value=2.4e-05  Score=61.28  Aligned_cols=49  Identities=12%  Similarity=0.326  Sum_probs=43.6

Q ss_pred             CccCCCHHHHHHHHHHHHHhCCCCc---cccccccCccc-Cccccchhhhccc
Q 013300           13 RKGLWSPEEDEKLLRHITKYGHGCW---SSVPKQAGLQR-CGKSCRLRWINYL   61 (446)
Q Consensus        13 kKG~WT~EEDe~LlelV~kyG~~nW---~kIAk~m~~gR-t~kQCR~RW~n~L   61 (446)
                      ++-.||+||.++++++|+.+|.++|   ..|+..|...| |..||+.+++.|.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            3567999999999999999998899   99999887566 9999999988774

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=97.55  E-value=3.7e-05  Score=82.14  Aligned_cols=69  Identities=22%  Similarity=0.429  Sum_probs=62.7

Q ss_pred             CccCccCHHHHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHHHHhHHHHHhcCCCCCCCCCCcccc
Q 013300           65 LKRGTFSQQEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVE  133 (446)
Q Consensus        65 lkrg~WT~EED~kLlelv~~yG-nkWskIAk~LpgRT~~qcKnRW~~iLkkklr~~g~~p~~~k~l~ele  133 (446)
                      ++.|.|+.-||+.|-.+|.+|| +.|++|+..+..++..||++||...+.+.+++-.|...++..+.-+-
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhla   74 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLA   74 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHH
Confidence            4678999999999999999999 77999999999999999999999999999999999988877665443

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.51  E-value=0.00026  Score=55.45  Aligned_cols=46  Identities=13%  Similarity=0.292  Sum_probs=40.3

Q ss_pred             cCccCHHHHHHHHHHHHHhCC-Ch---HHHhhhCC-CC-CHHHHHHHHHHHh
Q 013300           67 RGTFSQQEENLIIELHAVLGN-RW---SQIAAQLP-GR-TDNEIKNLWNSCL  112 (446)
Q Consensus        67 rg~WT~EED~kLlelv~~yGn-kW---skIAk~Lp-gR-T~~qcKnRW~~iL  112 (446)
                      +-.||+||..+++++++.||. +|   ..|++.|. .| |..||+.|.....
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            457999999999999999995 99   99999985 45 9999999987543

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.39  E-value=7.3e-05  Score=78.55  Aligned_cols=50  Identities=20%  Similarity=0.596  Sum_probs=46.4

Q ss_pred             CCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccC
Q 013300           12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLR   62 (446)
Q Consensus        12 lkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~   62 (446)
                      +-..-||.+|+-+|++++..||-|||..||.++| .|+..+|+++|.+++.
T Consensus        70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~fv  119 (438)
T KOG0457|consen   70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKHFV  119 (438)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHHHh
Confidence            4567799999999999999999999999999999 9999999999998764

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.38  E-value=0.00027  Score=74.43  Aligned_cols=47  Identities=23%  Similarity=0.447  Sum_probs=43.1

Q ss_pred             CccCccCHHHHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHHHH
Q 013300           65 LKRGTFSQQEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSC  111 (446)
Q Consensus        65 lkrg~WT~EED~kLlelv~~yG-nkWskIAk~LpgRT~~qcKnRW~~i  111 (446)
                      +-...||.+||.+||+++..|| ++|..||.+++.|+..+||.+|.++
T Consensus        70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~  117 (438)
T KOG0457|consen   70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKH  117 (438)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHH
Confidence            4456899999999999999999 9999999999999999999999743

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.01  E-value=0.00092  Score=62.44  Aligned_cols=53  Identities=17%  Similarity=0.343  Sum_probs=45.9

Q ss_pred             ccCccCHHHHHHHHHHHHHhC---C----ChHHHhhhCCCCCHHHHHHHHHHHhHHHHHhc
Q 013300           66 KRGTFSQQEENLIIELHAVLG---N----RWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQR  119 (446)
Q Consensus        66 krg~WT~EED~kLlelv~~yG---n----kWskIAk~LpgRT~~qcKnRW~~iLkkklr~~  119 (446)
                      +...||.|||.+|.+.|.+|-   +    -..++++.| +||..+|.=||+..+|+.+...
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~~   62 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEEA   62 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHHH
Confidence            457899999999999999883   2    278888889 9999999999999999887654

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.86  E-value=0.0011  Score=54.03  Aligned_cols=50  Identities=32%  Similarity=0.585  Sum_probs=35.3

Q ss_pred             cCccCHHHHHHHHHHHHH------hC--C------ChHHHhhhCC----CCCHHHHHHHHHHHhHHHH
Q 013300           67 RGTFSQQEENLIIELHAV------LG--N------RWSQIAAQLP----GRTDNEIKNLWNSCLKKKL  116 (446)
Q Consensus        67 rg~WT~EED~kLlelv~~------yG--n------kWskIAk~Lp----gRT~~qcKnRW~~iLkkkl  116 (446)
                      |..||.+|...||+++.+      ++  +      -|..||..|.    .||..||++||+++.+...
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk   68 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYK   68 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence            457999999999999877      22  1      3999999973    5999999999998554443

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=96.84  E-value=0.0038  Score=60.29  Aligned_cols=100  Identities=22%  Similarity=0.412  Sum_probs=73.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccccCc--ccCccccchhhhcccC----------------CCC-----ccCccCH
Q 013300           16 LWSPEEDEKLLRHITKYGHGCWSSVPKQAGL--QRCGKSCRLRWINYLR----------------PDL-----KRGTFSQ   72 (446)
Q Consensus        16 ~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~--gRt~kQCR~RW~n~L~----------------P~l-----krg~WT~   72 (446)
                      +|++++|-+|+.+|..-.  +-..|++-+..  .-|-..+.+||+..|.                |..     .+.+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            699999999999998754  46666664443  3356677889986652                221     4569999


Q ss_pred             HHHHHHHHHHHHhCC---ChHHHhhh----C-CCCCHHHHHHHHHHHhHHHHH
Q 013300           73 QEENLIIELHAVLGN---RWSQIAAQ----L-PGRTDNEIKNLWNSCLKKKLR  117 (446)
Q Consensus        73 EED~kLlelv~~yGn---kWskIAk~----L-pgRT~~qcKnRW~~iLkkklr  117 (446)
                      +||++|.........   .+.+|-..    | ++||+.++.++|+.+.+..+.
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL  131 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLL  131 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchh
Confidence            999999997765542   47777443    3 789999999999976666544

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.77  E-value=0.0017  Score=70.09  Aligned_cols=45  Identities=18%  Similarity=0.409  Sum_probs=42.4

Q ss_pred             ccCccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHH
Q 013300           66 KRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNS  110 (446)
Q Consensus        66 krg~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~  110 (446)
                      -++.||++|..+|++++..||..|.+||.++++||..||-.|+.+
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~  296 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLR  296 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHh
Confidence            457899999999999999999999999999999999999999964

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.56  E-value=0.0024  Score=68.01  Aligned_cols=45  Identities=20%  Similarity=0.331  Sum_probs=42.2

Q ss_pred             cCccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHH
Q 013300           67 RGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSC  111 (446)
Q Consensus        67 rg~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~i  111 (446)
                      ...||.+|..+|++.++.||..|.+||.+++.|+..||--||.++
T Consensus       279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            348999999999999999999999999999999999999999754

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.37  E-value=0.0015  Score=69.65  Aligned_cols=45  Identities=31%  Similarity=0.639  Sum_probs=41.7

Q ss_pred             CccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhc
Q 013300           13 RKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWIN   59 (446)
Q Consensus        13 kKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n   59 (446)
                      +...||.+|..+|+++|+.|| .+|.+||++++ +|+..||..|+.+
T Consensus       278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVg-tKt~EqCIl~FL~  322 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVG-TKTKEQCILHFLQ  322 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhh-hhHHHHHHHhC-CCCHHHHHHHHHc
Confidence            566899999999999999999 67999999999 9999999999874

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.32  E-value=0.0056  Score=49.27  Aligned_cols=50  Identities=12%  Similarity=0.341  Sum_probs=32.5

Q ss_pred             cCccCHHHHHHHHHHHHHhC-------CC--hHHHhhhCC-CCCHHHHHHHHHHHhHHHH
Q 013300           67 RGTFSQQEENLIIELHAVLG-------NR--WSQIAAQLP-GRTDNEIKNLWNSCLKKKL  116 (446)
Q Consensus        67 rg~WT~EED~kLlelv~~yG-------nk--WskIAk~Lp-gRT~~qcKnRW~~iLkkkl  116 (446)
                      |.+||.|||..|++.|+++.       ++  |.++++.-+ .+|-...|+||...|+.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            56899999999999997653       11  999999987 8999999999987776554

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.19  E-value=0.0068  Score=57.25  Aligned_cols=53  Identities=19%  Similarity=0.381  Sum_probs=43.7

Q ss_pred             CccCccCHHHHHHHHHHHHHhCCC-------hHHHhhhCCCCCHHHHHHHHHHHhHHHHHh
Q 013300           65 LKRGTFSQQEENLIIELHAVLGNR-------WSQIAAQLPGRTDNEIKNLWNSCLKKKLRQ  118 (446)
Q Consensus        65 lkrg~WT~EED~kLlelv~~yGnk-------WskIAk~LpgRT~~qcKnRW~~iLkkklr~  118 (446)
                      .+.+.||.|||.+|.+.|..|+..       ...++..| +||..+|..||+.++++.+..
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Yee   62 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQE   62 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHHH
Confidence            356789999999999999988732       56666777 899999999999999976543

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.15  E-value=0.0036  Score=67.74  Aligned_cols=46  Identities=26%  Similarity=0.619  Sum_probs=42.0

Q ss_pred             CCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhc
Q 013300           12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWIN   59 (446)
Q Consensus        12 lkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n   59 (446)
                      -.++.||.+|+-+|+++|.+|| .+|.+||.+++ +|+..||..++.+
T Consensus       251 ~~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg-~ks~eqCI~kFL~  296 (506)
T KOG1279|consen  251 SARPNWTEQETLLLLEAIEMYG-DDWNKVADHVG-TKSQEQCILKFLR  296 (506)
T ss_pred             cCCCCccHHHHHHHHHHHHHhc-ccHHHHHhccC-CCCHHHHHHHHHh
Confidence            3467899999999999999999 67999999999 9999999998764

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=95.60  E-value=0.0039  Score=58.34  Aligned_cols=50  Identities=28%  Similarity=0.619  Sum_probs=42.7

Q ss_pred             CCccCCCHHHHHHHHHHHHHh---CC---CCccccccccCcccCccccchhhhcccCC
Q 013300           12 LRKGLWSPEEDEKLLRHITKY---GH---GCWSSVPKQAGLQRCGKSCRLRWINYLRP   63 (446)
Q Consensus        12 lkKG~WT~EEDe~LlelV~ky---G~---~nW~kIAk~m~~gRt~kQCR~RW~n~L~P   63 (446)
                      .|...||.|||.+|.+.|-+|   |.   ....+|++.++  ||+..|.=||+.++..
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VRk   57 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVRK   57 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHHH
Confidence            467789999999999999998   21   24889999887  9999999999988863

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=95.44  E-value=0.0048  Score=50.30  Aligned_cols=47  Identities=23%  Similarity=0.603  Sum_probs=32.3

Q ss_pred             ccCCCHHHHHHHHHHHHH--h----C--C-----CCcccccccc---CcccCccccchhhhcc
Q 013300           14 KGLWSPEEDEKLLRHITK--Y----G--H-----GCWSSVPKQA---GLQRCGKSCRLRWINY   60 (446)
Q Consensus        14 KG~WT~EEDe~LlelV~k--y----G--~-----~nW~kIAk~m---~~gRt~kQCR~RW~n~   60 (446)
                      |..||.+|...|++++..  +    +  .     .-|..||..|   |..|++.||+.||.+.
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L   63 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL   63 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            357999999999999987  2    1  1     1399999976   4579999999999864

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.34  E-value=0.041  Score=44.27  Aligned_cols=49  Identities=29%  Similarity=0.556  Sum_probs=40.3

Q ss_pred             cCccCHHHHHHHHHHHHHhC----C-------------ChHHHhhhC-----CCCCHHHHHHHHHHHhHHH
Q 013300           67 RGTFSQQEENLIIELHAVLG----N-------------RWSQIAAQL-----PGRTDNEIKNLWNSCLKKK  115 (446)
Q Consensus        67 rg~WT~EED~kLlelv~~yG----n-------------kWskIAk~L-----pgRT~~qcKnRW~~iLkkk  115 (446)
                      ...||.+|.+.|++++.+|.    +             -|..|+..|     +.|+..+||.+|.++....
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~   72 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKA   72 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence            45799999999999998873    1             299999986     2499999999999866544

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.21  E-value=0.021  Score=58.81  Aligned_cols=46  Identities=30%  Similarity=0.490  Sum_probs=42.3

Q ss_pred             cCccCHHHHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHHHHh
Q 013300           67 RGTFSQQEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCL  112 (446)
Q Consensus        67 rg~WT~EED~kLlelv~~yG-nkWskIAk~LpgRT~~qcKnRW~~iL  112 (446)
                      -..|+.+|+.+|++....+| ++|..||.+++.|+...||.+|..+.
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y  109 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMY  109 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            34799999999999999999 99999999999999999999997554

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=95.18  E-value=0.0071  Score=48.67  Aligned_cols=51  Identities=22%  Similarity=0.396  Sum_probs=32.8

Q ss_pred             ccCCCHHHHHHHHHHHHHhCC------CC--ccccccccCcccCccccchhhhcccCCC
Q 013300           14 KGLWSPEEDEKLLRHITKYGH------GC--WSSVPKQAGLQRCGKSCRLRWINYLRPD   64 (446)
Q Consensus        14 KG~WT~EEDe~LlelV~kyG~------~n--W~kIAk~m~~gRt~kQCR~RW~n~L~P~   64 (446)
                      |.+||.|||+.|++.|..+..      ++  |.+++...+..++-..-|+||.+.|.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~   60 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR   60 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence            567999999999999976631      22  9999987765788888899999998764

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.03  E-value=0.0077  Score=61.88  Aligned_cols=48  Identities=17%  Similarity=0.482  Sum_probs=44.8

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccC
Q 013300           14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLR   62 (446)
Q Consensus        14 KG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~   62 (446)
                      ---|+.+|+-+|++.....|-+||..||..+| .|+...|+++|.+++.
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence            34599999999999999999999999999999 9999999999998775

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=94.76  E-value=0.074  Score=62.26  Aligned_cols=101  Identities=16%  Similarity=0.342  Sum_probs=78.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccch-------hhhc---------cc------------------
Q 013300           16 LWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRL-------RWIN---------YL------------------   61 (446)
Q Consensus        16 ~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~-------RW~n---------~L------------------   61 (446)
                      -|+.-+=..++.++.+||..+-..||..|. +++...++.       ||..         .+                  
T Consensus       826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~  904 (1033)
T PLN03142        826 TWSRRDFNAFIRACEKYGRNDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIG  904 (1033)
T ss_pred             cccHHHHHHHHHHHHHhCHhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            388888888899999999999999999998 788877762       2211         00                  


Q ss_pred             ----------------CCCCccCccCHHHHHHHHHHHHHhC-CChHHHhhh------------CCCCCHHHHHHHHHHHh
Q 013300           62 ----------------RPDLKRGTFSQQEENLIIELHAVLG-NRWSQIAAQ------------LPGRTDNEIKNLWNSCL  112 (446)
Q Consensus        62 ----------------~P~lkrg~WT~EED~kLlelv~~yG-nkWskIAk~------------LpgRT~~qcKnRW~~iL  112 (446)
                                      .+..++..+|+|||..|+-++.+|| ++|.+|-..            |..||+..|..|...++
T Consensus       905 ~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~  984 (1033)
T PLN03142        905 KKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLI  984 (1033)
T ss_pred             HHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHH
Confidence                            0222445699999999999999999 789998443            34799999999999888


Q ss_pred             HHHHH
Q 013300          113 KKKLR  117 (446)
Q Consensus       113 kkklr  117 (446)
                      +-..+
T Consensus       985 ~~~~~  989 (1033)
T PLN03142        985 RLIEK  989 (1033)
T ss_pred             HHHHH
Confidence            76644

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=93.74  E-value=0.019  Score=46.18  Aligned_cols=49  Identities=27%  Similarity=0.408  Sum_probs=39.2

Q ss_pred             CccCCCHHHHHHHHHHHHHhCC----------------CCcccccccc----CcccCccccchhhhccc
Q 013300           13 RKGLWSPEEDEKLLRHITKYGH----------------GCWSSVPKQA----GLQRCGKSCRLRWINYL   61 (446)
Q Consensus        13 kKG~WT~EEDe~LlelV~kyG~----------------~nW~kIAk~m----~~gRt~kQCR~RW~n~L   61 (446)
                      ++..||.+|.+.|+++|.+|..                ..|.+|+..+    +..|+..+|+.+|.+..
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            4678999999999999999821                2399999865    22699999999998753

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=93.49  E-value=0.02  Score=54.09  Aligned_cols=50  Identities=24%  Similarity=0.479  Sum_probs=40.3

Q ss_pred             CCCccCCCHHHHHHHHHHHHHhCCC------CccccccccCcccCccccchhhhcccC
Q 013300           11 KLRKGLWSPEEDEKLLRHITKYGHG------CWSSVPKQAGLQRCGKSCRLRWINYLR   62 (446)
Q Consensus        11 klkKG~WT~EEDe~LlelV~kyG~~------nW~kIAk~m~~gRt~kQCR~RW~n~L~   62 (446)
                      +.++..||.|||.+|-+.|-+|+..      ....++..+.  |++..|..||+-++.
T Consensus         2 k~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~--rt~aac~fRwNs~vr   57 (170)
T PRK13923          2 KTRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK--RTAAACGFRWNSVVR   57 (170)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--hhHHHHHhHHHHHHH
Confidence            3567899999999999999998643      2566666765  999999999976665

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=93.14  E-value=0.16  Score=51.88  Aligned_cols=52  Identities=21%  Similarity=0.388  Sum_probs=41.2

Q ss_pred             cCccCHHHHHHHHHHHHHh----------CCChHHHhhhCC----CCCHHHHHHHHHHHhHHHHHh
Q 013300           67 RGTFSQQEENLIIELHAVL----------GNRWSQIAAQLP----GRTDNEIKNLWNSCLKKKLRQ  118 (446)
Q Consensus        67 rg~WT~EED~kLlelv~~y----------GnkWskIAk~Lp----gRT~~qcKnRW~~iLkkklr~  118 (446)
                      ...|+.+|-..||++..+.          +..|..||+.|.    -||+.+||+||.++.++..+.
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~  119 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKE  119 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence            3789999999999998654          234999999652    399999999999977665443

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=91.09  E-value=0.43  Score=39.32  Aligned_cols=46  Identities=24%  Similarity=0.551  Sum_probs=35.6

Q ss_pred             ccCHHHHHHHHHHHHHh---CC----------ChHHHhhhCCC-----CCHHHHHHHHHHHhHH
Q 013300           69 TFSQQEENLIIELHAVL---GN----------RWSQIAAQLPG-----RTDNEIKNLWNSCLKK  114 (446)
Q Consensus        69 ~WT~EED~kLlelv~~y---Gn----------kWskIAk~Lpg-----RT~~qcKnRW~~iLkk  114 (446)
                      .||+++++.|++++.+.   |+          .|..|+..|..     .+..||++||..+.+.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~   64 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD   64 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence            49999999999998654   22          29999998732     5789999999865543

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=90.22  E-value=0.25  Score=52.15  Aligned_cols=56  Identities=23%  Similarity=0.367  Sum_probs=49.1

Q ss_pred             cCccCHHHHHHHHHHHHHhCCChHHHhhh-----CCC-CCHHHHHHHHHHHhHHHHHhcCCC
Q 013300           67 RGTFSQQEENLIIELHAVLGNRWSQIAAQ-----LPG-RTDNEIKNLWNSCLKKKLRQRGID  122 (446)
Q Consensus        67 rg~WT~EED~kLlelv~~yGnkWskIAk~-----Lpg-RT~~qcKnRW~~iLkkklr~~g~~  122 (446)
                      ...||.||-+-|.++++.|.-+|..||..     ++. ||-..+|+||+.+-++.++.+.-.
T Consensus       130 dn~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~s  191 (445)
T KOG2656|consen  130 DNSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARAPS  191 (445)
T ss_pred             cccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHccCCC
Confidence            35799999999999999999999999887     655 999999999999888887776544

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=89.22  E-value=0.39  Score=50.76  Aligned_cols=47  Identities=21%  Similarity=0.282  Sum_probs=43.0

Q ss_pred             CccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhHH
Q 013300           68 GTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKK  114 (446)
Q Consensus        68 g~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkk  114 (446)
                      .+|+.+|-+++..+....|..+..|+..||.|.+.|||.+|.+--|+
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~  412 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKV  412 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhh
Confidence            38999999999999999999999999999999999999999754443

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=88.98  E-value=0.8  Score=40.96  Aligned_cols=53  Identities=21%  Similarity=0.417  Sum_probs=41.5

Q ss_pred             CCccCccCHHHHHHHHHHHHHhCC----ChHHHhhh------------CCCCCHHHHHHHHHHHhHHHH
Q 013300           64 DLKRGTFSQQEENLIIELHAVLGN----RWSQIAAQ------------LPGRTDNEIKNLWNSCLKKKL  116 (446)
Q Consensus        64 ~lkrg~WT~EED~kLlelv~~yGn----kWskIAk~------------LpgRT~~qcKnRW~~iLkkkl  116 (446)
                      ..++..||+|||.-|+-++.+||-    .|.+|-..            |..||+..|..|-..+++-..
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~  114 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLIE  114 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHHH
Confidence            456789999999999999999995    69888665            246999999999998886543

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=85.26  E-value=2.1  Score=31.81  Aligned_cols=42  Identities=24%  Similarity=0.331  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhHH
Q 013300           72 QQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKK  114 (446)
Q Consensus        72 ~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkk  114 (446)
                      ++++..++.++...|-.|.+||+.+ |.+...|+.+....+++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~~   53 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARKK   53 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHhh
Confidence            4678888999999999999999999 89999999998876654

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=85.18  E-value=1.4  Score=49.92  Aligned_cols=44  Identities=16%  Similarity=0.289  Sum_probs=37.8

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhc
Q 013300           14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWIN   59 (446)
Q Consensus        14 KG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n   59 (446)
                      ..+||+.|-.++.+++..|. +++..|+++++ +++..||.+-|..
T Consensus       619 Sd~WTp~E~~lF~kA~y~~~-KDF~~v~km~~-~KtVaqCVeyYYt  662 (907)
T KOG4167|consen  619 SDKWTPLERKLFNKALYTYS-KDFIFVQKMVK-SKTVAQCVEYYYT  662 (907)
T ss_pred             cccccHHHHHHHHHHHHHhc-ccHHHHHHHhc-cccHHHHHHHHHH
Confidence            45799999999999999998 67999999998 8999999887754

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=82.75  E-value=4.4  Score=46.22  Aligned_cols=55  Identities=7%  Similarity=0.064  Sum_probs=45.2

Q ss_pred             hhhcccCCCC---ccCccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHH
Q 013300           56 RWINYLRPDL---KRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNS  110 (446)
Q Consensus        56 RW~n~L~P~l---krg~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~  110 (446)
                      ||..|+.-+.   ....||+.|-.++-+++..|...+-.|++.++++|-.+|-..|+.
T Consensus       605 ~~~~h~la~Y~Y~gSd~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYt  662 (907)
T KOG4167|consen  605 RLKCHPLANYHYAGSDKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYT  662 (907)
T ss_pred             CccccccceeeecCcccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHH
Confidence            4555544332   235899999999999999999999999999999999999887653

>smart00595 MADF subfamily of SANT domain

Probab=80.74  E-value=3  Score=33.93  Aligned_cols=26  Identities=27%  Similarity=0.505  Sum_probs=22.1

Q ss_pred             hHHHhhhCCCCCHHHHHHHHHHHhHHH
Q 013300           89 WSQIAAQLPGRTDNEIKNLWNSCLKKK  115 (446)
Q Consensus        89 WskIAk~LpgRT~~qcKnRW~~iLkkk  115 (446)
                      |.+||..|+. +..+|+.+|+.+....
T Consensus        30 W~~Ia~~l~~-~~~~~~~kw~~LR~~y   55 (89)
T smart00595       30 WEEIAEELGL-SVEECKKRWKNLRDRY   55 (89)
T ss_pred             HHHHHHHHCc-CHHHHHHHHHHHHHHH
Confidence            9999999955 9999999999865543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	446
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		3e-24
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		1e-23
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		6e-23
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		7e-23
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		7e-23
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		1e-12
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		2e-10
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		5e-10
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		1e-09
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		2e-09
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		4e-06
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		8e-06
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		1e-05

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  109 bits (273), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/105 (47%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
Query: 12  LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFS 71
           L KG W+ EED+K++  + KYG   W+ + K     R GK CR RW N+L P++K+ +++
Sbjct: 5   LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLK-GRLGKQCRERWHNHLNPEVKKSSWT 63
Query: 72  QQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116
           ++E+ +I E H VLGNRW++IA  LPGRTDN +KN WNS +K+K+
Sbjct: 64  EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/106 (45%), Positives = 75/106 (70%), Gaps = 1/106 (0%)
Query: 11  KLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTF 70
           +L KG W+ EED++++ H+ KYG   WS + K     R GK CR RW N+L P++K+ ++
Sbjct: 24  ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 82
Query: 71  SQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116
           +++E+ +I + H  LGNRW++IA  LPGRTDN +KN WNS +++K+
Sbjct: 83  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score =  105 bits (261), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/105 (45%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
Query: 12  LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFS 71
           L KG W+ EED+++++ + KYG   WS + K     R GK CR RW N+L P++K+ +++
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 72  QQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116
           ++E+ +I + H  LGNRW++IA  LPGRTDN IKN WNS +++K+
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score =  105 bits (261), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
Query: 12  LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFS 71
           L KG W+ EED+++++ + KYG   WS + K     R GK CR RW N+L P++K+ +++
Sbjct: 56  LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 114
Query: 72  QQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116
           ++E+ +I + H  LGNRW++IA  LPGRTDN IKN WNS +++K+
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score =  105 bits (261), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 48/106 (45%), Positives = 75/106 (70%), Gaps = 1/106 (0%)
Query: 11  KLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTF 70
           +L KG W+ EED+++++ + KYG   WS + K     R GK CR RW N+L P++K+ ++
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 59
Query: 71  SQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116
           +++E+ +I + H  LGNRW++IA  LPGRTDN IKN WNS +++K+
Sbjct: 60  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Query: 14  KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQ 73
           KG ++  ED+ +  ++ + G   W  +       R  K CR RW N+L P + +  ++ +
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 74  EENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116
           E+  I   +  LG++WS IA  +PGRTDN IKN WNS + K++
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 13  RKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQ 72
           +K  ++PEEDE L R + ++G   W  +       R  + CR RW NYL P +    ++ 
Sbjct: 10  KKQKFTPEEDEMLKRAVAQHGSD-WKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 73  QEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLW 108
           +E+ L+++     G +W+ IA   PGRTD  IKN W
Sbjct: 68  EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 18  SPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENL 77
           + EED KL + + +YG   W  +  Q  + R  + CR RW NY+ P L+   +S +E+ L
Sbjct: 5   TEEEDLKLQQLVMRYGAKDWIRIS-QLMITRNPRQCRERWNNYINPALRTDPWSPEEDML 63
Query: 78  IIELHAVLGNRWSQIAAQLPGRTDNEIKNLW 108
           + + +A  G +W++I+  L  R+DN I+N W
Sbjct: 64  LDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 41/52 (78%)
Query: 65  LKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116
           +K+ +++++E+ +I + H  LGNRW++IA  LPGRTDN IKN WNS +++K+
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 42/53 (79%)
Query: 64  DLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116
           ++K+ +++++E+ ++ + H  LGNRW++IA  LPGRTDN IKN WNS +++K+
Sbjct: 2   EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPD 64
          L KG W+ EED++L++ + KYG   WS + K     R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPD 64
          L KG W+ EED+++++ + KYG   WS + K     R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPD 64
          L KG W+ EED++++  + KYG   WS + K     R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	446
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	7e-69
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	1e-67
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	3e-67
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	2e-59
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	5e-56
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	8e-32
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	5e-53
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	7e-27
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	4e-22
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	5e-05
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	2e-20
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	9e-07
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	1e-14
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	5e-05
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	1e-10
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	4e-04
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	6e-09
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	3e-07
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	2e-07
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	3e-07
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	7e-07
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	1e-06
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	2e-06
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	2e-06
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	2e-06
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	1e-05
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	3e-05
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	3e-04
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	8e-05
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	5e-04

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  213 bits (544), Expect = 7e-69
 Identities = 48/106 (45%), Positives = 75/106 (70%), Gaps = 1/106 (0%)

Query: 11  KLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTF 70
           +L KG W+ EED+++++ + KYG   WS + K     R GK CR RW N+L P++K+ ++
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 59

Query: 71  SQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116
           +++E+ +I + H  LGNRW++IA  LPGRTDN IKN WNS +++K+
Sbjct: 60  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  210 bits (537), Expect = 1e-67
 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 1/121 (0%)

Query: 14  KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQ 73
           KG ++  ED+ +  ++ + G   W  +       R  K CR RW N+L P + +  ++ +
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 74  EENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVE 133
           E+  I   +  LG++WS IA  +PGRTDN IKN WNS + K++           P    +
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPDRSKK 120

Query: 134 N 134
            
Sbjct: 121 R 121

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  209 bits (535), Expect = 3e-67
 Identities = 48/108 (44%), Positives = 75/108 (69%), Gaps = 1/108 (0%)

Query: 9   KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRG 68
             +L KG W+ EED++++ H+ KYG   WS + K     R GK CR RW N+L P++K+ 
Sbjct: 22  NPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKT 80

Query: 69  TFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116
           +++++E+ +I + H  LGNRW++IA  LPGRTDN +KN WNS +++K+
Sbjct: 81  SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  189 bits (482), Expect = 2e-59
 Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 2/119 (1%)

Query: 9   KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRG 68
            +  +K  ++PEEDE L R + ++G   W  +       R  + CR RW NYL P +   
Sbjct: 6   LKAAKKQKFTPEEDEMLKRAVAQHGSD-WKMIAATFP-NRNARQCRDRWKNYLAPSISHT 63

Query: 69  TFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHK 127
            ++ +E+ L+++     G +W+ IA   PGRTD  IKN W +   K    +    + H 
Sbjct: 64  PWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQMLEHH 122

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  181 bits (462), Expect = 5e-56
 Identities = 48/106 (45%), Positives = 75/106 (70%), Gaps = 1/106 (0%)

Query: 11  KLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTF 70
           +L KG W+ EED+++++ + KYG   WS + K     R GK CR RW N+L P++K+ ++
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 113

Query: 71  SQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116
           +++E+ +I + H  LGNRW++IA  LPGRTDN IKN WNS +++K+
Sbjct: 114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  118 bits (297), Expect = 8e-32
 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 2/102 (1%)

Query: 12  LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFS 71
           L K  W+ EEDEKL + + + G   W  +       R    C+ RW   L P+L +G ++
Sbjct: 4   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWT 62

Query: 72  QQEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCL 112
           ++E+  +I+L    G  RWS IA  L GR   + +  W++ L
Sbjct: 63  KEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 104

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  172 bits (438), Expect = 5e-53
 Identities = 32/106 (30%), Positives = 58/106 (54%), Gaps = 1/106 (0%)

Query: 14  KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQ 73
           K  ++ EED KL + + +YG   W  + +     R  + CR RW NY+ P L+   +S +
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPE 59

Query: 74  EENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQR 119
           E+ L+ + +A  G +W++I+  L  R+DN I+N W    + + + +
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQ 105

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score =  101 bits (253), Expect = 7e-27
 Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPD 64
          L KG W+ EED++L++ + KYG   WS + K     R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 88.5 bits (220), Expect = 4e-22
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFS 71
           + G+W   EDE L   + KYG   WS +      ++  K C+ RW  +L P +K+  +S
Sbjct: 7  GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWS 65

Query: 72 QQEE 75
              
Sbjct: 66 GPSS 69

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 40.3 bits (95), Expect = 5e-05
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 62  RPDLKRGTFSQQEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCL 112
               K G +   E+ ++       G N+WS+IA+ L  ++  + K  W   L
Sbjct: 4   GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWL 55

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 83.4 bits (207), Expect = 2e-20
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPD 64
          L K  W+ EEDEKL + + + G   W  +       R    C+ RW   L P+
Sbjct: 1  LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 44.5 bits (106), Expect = 9e-07
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 65  LKRGTFSQQEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCLK 113
           L +  ++++E+  + +L    G + W  IA  LP RTD + ++ W   L 
Sbjct: 1   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 67.6 bits (166), Expect = 1e-14
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLK 66
              K  W+ EEDE+L   + ++G   W  +       R  + C+ RW+  L     
Sbjct: 4  GSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 39.9 bits (94), Expect = 5e-05
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 62  RPDLKRGTFSQQEENLIIELHAVLGNR-WSQIAAQLPGRTD 101
                +  ++ +E+  +  L    G + W  +A+  P RTD
Sbjct: 3   SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTD 43

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 55.8 bits (135), Expect = 1e-10
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 13 RKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQ-RCGKSCRLRWINYLR 62
          ++  W  EED+ L   + KYG G WS +        R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 66  KRGTFSQQEENLIIELHAVLGN-RWSQIAAQLP--GRTDNEIKNLWNSCLKKK 115
           KR  +  +E+  +       G   WS+I        RT   +K+ W +  K K
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 51.4 bits (123), Expect = 6e-09
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 3/58 (5%)

Query: 10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKR 67
             +K  WS EE+EKLL          W ++    G  R    C   +   L    +R
Sbjct: 5  SSGKKTEWSREEEEKLLHLAKLMPTQ-WRTIAPIIG--RTAAQCLEHYEFLLDKAAQR 59

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 46.4 bits (110), Expect = 3e-07
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 65  LKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120
            K+  +S++EE  ++ L  ++  +W  I A + GRT  +    +   L K  ++  
Sbjct: 7   GKKTEWSREEEEKLLHLAKLMPTQWRTI-APIIGRTAAQCLEHYEFLLDKAAQRDS 61

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 50.8 bits (121), Expect = 3e-08
 Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 9/103 (8%)

Query: 2   GRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQ---RCGKSCRLRWI 58
           G H     Q+  +  +S  E E L++ + K G G W  V   A      R     + +W 
Sbjct: 1   GSHMLEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWK 60

Query: 59  NYLR-----PDLKRGTFSQQEENL-IIELHAVLGNRWSQIAAQ 95
             +      P  +RG    QE    ++  H     +  Q   Q
Sbjct: 61  TLVHTAKISPQQRRGEPVPQELLNRVLNAHGYWTQQQMQQLQQ 103

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 9e-08
 Identities = 56/444 (12%), Positives = 122/444 (27%), Gaps = 136/444 (30%)

Query: 63  PDLKRGTFSQQE-ENLIIELHAVLGNR---W------SQIAAQLPGRTDNEIKNL-WNSC 111
            D+ +   S++E +++I+   AV G     W       ++  +          N  +   
Sbjct: 39  QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR--INYKF--- 93

Query: 112 LKKKLRQRGIDPVTHKPLSEVENGEDKNQTTNSQDKVSGVSGELNLLNTELTAKHGTTAA 171
           L   ++     P     +      E +++  N     +    + N+   +   K     A
Sbjct: 94  LMSPIKTEQRQP----SMMTRMYIEQRDRLYNDNQVFA----KYNVSRLQPYLK--LRQA 143

Query: 172 LNEQKP--------------TSVTAQAYHLSEIQ------------GS-SIPSTVNNNRS 204
           L E +P              T V        ++Q             + + P TV     
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 205 NFYTHRFASSNQESSSITNSQPSDFVGHFPLQQLNCASNARLSTAASNSPL--------- 255
               ++   +    S  +++          +  +     A L     + P          
Sbjct: 204 KLL-YQIDPNWTSRSDHSSNIK------LRIHSI----QAELRRLLKSKPYENCLLVLLN 252

Query: 256 -WFMQTSKSFDINSQ---------------------FSSNAMPTILPPVSSSSLFSAPMS 293
               +   +F+++ +                      S +     L P    SL    + 
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 294 YKTSVTLPSDNHSI-P--------SFTVNGSR--YWEAGGASNSNSVSSSSTELQSTSS- 341
            +    LP +  +  P        S     +    W+        ++  SS  +   +  
Sbjct: 313 CRPQ-DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 342 ---FLESSIFP-------------WGLADCSSSEKEGQIN------LIDSHPDDVKWPEY 379
              F   S+FP             W   D   S+    +N      L++  P +      
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWF--DVIKSDVMVVVNKLHKYSLVEKQPKE----ST 425

Query: 380 FQTPSLLMAAALQNQTSQSLYNEI 403
              PS+ +   ++ +   +L+  I
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSI 449

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 3e-06
 Identities = 78/546 (14%), Positives = 138/546 (25%), Gaps = 211/546 (38%)

Query: 10  QKLRKGLWSPEEDEKLLRHITKYG-HGCWSSVPKQAGLQRCGKSC----RLR-------- 56
            KLR+ L         LR        G         G    GK+                
Sbjct: 138 LKLRQALLE-------LRPAKNVLIDG-------VLG---SGKTWVALDVCLSYKVQCKM 180

Query: 57  -----WINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTD---------N 102
                W+N     LK           ++E+   L     QI      R+D         +
Sbjct: 181 DFKIFWLN-----LKN----CNSPETVLEM---LQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 103 EIK--------------------NLWNS---------CLKKKL---RQRGI------DPV 124
            I+                    N+ N+         C  K L   R + +         
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC--KILLTTRFKQVTDFLSAATT 286

Query: 125 THKPLSEVENGEDKNQTTNSQDKVSGVSGELNLLNTELTAKHGTTAALNEQKPTSVTAQA 184
           TH  L         ++               +LL      K      L+  +P  +  + 
Sbjct: 287 THISLDHHSMTLTPDEV-------------KSLL-----LK-----YLD-CRPQDLPREV 322

Query: 185 -----YHLSEIQGSSIPSTVNNNRSNFYTHRFASSNQE--SSSITNSQPSDFVGHF---- 233
                  LS I   SI         + + H           SS+   +P+++   F    
Sbjct: 323 LTTNPRRLSII-AESIRD--GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

Query: 234 --------PLQQLNCASNARLSTAASNSPLWF-MQTSKSFDINSQFSSNAMPTILPPVSS 284
                   P   L              S +WF +  S    + ++    ++    P  S+
Sbjct: 380 VFPPSAHIPTILL--------------SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425

Query: 285 SSL------FSAPM------------SYKTSVTLPSDNHSIPSFTVNGSRYWEAG----G 322
            S+          +             Y    T  SD+   P   ++   Y   G     
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY--LDQYFYSHIGHHLKN 483

Query: 323 ASNSNSVSSSSTELQSTSSFLESSIFPWGLADCSSSEKEGQINLIDSHPDDVKWPEYFQT 382
             +   ++           FLE  I     A  +S       +++++      +  Y   
Sbjct: 484 IEHPERMTLFRMVFLDF-RFLEQKIRHDSTAWNASG------SILNTLQQLKFYKPYICD 536

Query: 383 PSLLMAAALQNQTSQSLYNEI-----KSETHILTDSSSGIWPQNQQQPLQNSD-----IC 432
                     +   + L N I     K E +++    + +     +  L   D       
Sbjct: 537 ---------NDPKYERLVNAILDFLPKIEENLICSKYTDL----LRIALMAEDEAIFEEA 583

Query: 433 AKEIQR 438
            K++QR
Sbjct: 584 HKQVQR 589

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 9  KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQ-RCGKSCRLRWINYLRPDL 65
              +K  W+ EE E +   + KYG G W+++ K      R     + RW    R  +
Sbjct: 6  TNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 13 RKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQ-RCGKSCRLRWINYLRPDL 65
          +K  W+ EE E +   + KYG G W+++ K      R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 45.5 bits (108), Expect = 7e-07
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 9  KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQ-RCGKSCRLRWINYLRPDL 65
           +  ++  W  EED+ L   + KYG G WS +        R     + RW    +  L
Sbjct: 5  HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL 62

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 13 RKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61
              W+ +E+  LL  +   G G W  V  Q    +  + C   ++ Y 
Sbjct: 7  GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYF 54

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 46.3 bits (109), Expect = 2e-06
 Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 9/97 (9%)

Query: 9   KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQA---GLQRCGKSCRLRWINYLR--- 62
            Q+  +  ++  E E L+  +   G G W  V  +A      R     + +W   +    
Sbjct: 26  GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85

Query: 63  --PDLKRGTFSQQEENL-IIELHAVLGNRWSQIAAQL 96
             P  +RG    QE    ++   A      S     L
Sbjct: 86  IAPQQRRGAPVPQELLDRVLAAQAYWSVDSSGRIVTL 122

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 45.0 bits (106), Expect = 2e-06
 Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 9/81 (11%)

Query: 17 WSPEEDEKLLRHITKYGHGCWSSVPKQA---GLQRCGKSCRLRWINYLR-----PDLKRG 68
          +S  E E L+  +   G G W  V  +A      R     + +W   +      P  +RG
Sbjct: 3  FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 69 TFSQQEENL-IIELHAVLGNR 88
              Q+    ++  HA    +
Sbjct: 63 EPVPQDLLDRVLAAHAYWSQQ 83

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 45.6 bits (107), Expect = 2e-06
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 9/91 (9%)

Query: 9   KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQ---RCGKSCRLRWINYLR--- 62
            Q+  +  +S  E E L+  +   G G W  V  +A      R     + +W   +    
Sbjct: 12  SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 71

Query: 63  --PDLKRGTFSQQE-ENLIIELHAVLGNRWS 90
             P  +RG    Q+  + ++  HA    +  
Sbjct: 72  IAPQQRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 10/44 (22%), Positives = 18/44 (40%)

Query: 17 WSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60
          W  +E+  L+      G G W+ +    G  R  + CR  ++  
Sbjct: 12 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 8  YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKR 67
             +   G ++PEE EKL     K+G   W+++    G  R   S + R    ++     
Sbjct: 17 QGDRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAALG--RSASSVKDRC-RLMKDTCNT 72

Query: 68 G 68
          G
Sbjct: 73 G 73

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 66  KRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQ 118
             G ++ +E   + EL    GN W+ I A L GR+ + +K+     +K     
Sbjct: 22  HVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRC-RLMKDTCNT 72

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 40.3 bits (94), Expect = 8e-05
 Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 1/87 (1%)

Query: 54  RLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLK 113
                +  R +L    ++++E     +     G  WS IA  +  +T ++ KN + +  K
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFN-YK 61

Query: 114 KKLRQRGIDPVTHKPLSEVENGEDKNQ 140
           K+     I       + +  N   K +
Sbjct: 62  KRQNLDEILQQHKLKMEKERNARRKKK 88

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 40.7 bits (94), Expect = 5e-04
 Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 15/103 (14%)

Query: 13  RKGLWSPEEDEKLLRHITK-----YGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKR 67
            K  ++ EEDE +L  + K       H  +  +         G S R R+  YL   L+ 
Sbjct: 7   NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEI-SHYVPNHTGNSIRHRFRVYLSKRLEY 65

Query: 68  GTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNS 110
                +   L+ +     GN                IK  +++
Sbjct: 66  VYEVDKFGKLVRDDD---GNLIKT------KVLPPSIKRKFSA 99

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	446
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	100.0
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.98
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.97
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.97
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.96
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.83
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.81
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.71
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.68
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.66
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.65
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.64
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.64
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.63
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.63
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.63
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.61
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.59
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.58
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.56
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.55
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.54
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.53
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.53
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.51
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.51
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.51
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.48
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.47
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.47
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.46
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.45
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.45
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.44
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.43
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.43
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.42
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.42
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.11
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.36
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.36
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.35
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.29
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.29
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.27
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.21
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.2
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.82
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.18
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.17
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.16
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.15
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.14
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.1
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.9
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.86
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.84
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.79
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.62
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.61
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.56
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.41
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.36
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.31
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.21
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.21
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.19
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.16
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	97.99
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.96
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.96
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.83
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.93
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.69
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.66
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.48
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.41
2crg_A	70	Metastasis associated protein MTA3; transcription	97.38
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.21
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.11
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.02
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	96.7
2crg_A	70	Metastasis associated protein MTA3; transcription	96.7
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	96.67
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	96.61
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.29
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	95.69
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	94.63
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	93.78
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	92.37
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	91.14
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	88.17
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	87.56
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	86.59

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=100.00  E-value=1.9e-33  Score=245.52  Aligned_cols=114  Identities=43%  Similarity=0.884  Sum_probs=103.2

Q ss_pred             CCCcccccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCccCccCHHHHHHHHHH
Q 013300            2 GRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIEL   81 (446)
Q Consensus         2 gR~~~~~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kLlel   81 (446)
                      .||..+++|.+++|+||+|||++|+++|.+||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||++|+++
T Consensus        15 ~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~   93 (128)
T 1h8a_C           15 HRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQA   93 (128)
T ss_dssp             -------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHH
T ss_pred             HHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHH
Confidence            58999999999999999999999999999999888999999999 99999999999999999999999999999999999


Q ss_pred             HHHhCCChHHHhhhCCCCCHHHHHHHHHHHhHHHH
Q 013300           82 HAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL  116 (446)
Q Consensus        82 v~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkkkl  116 (446)
                      |.+||++|+.||+.|+|||+++||+||+.++++++
T Consensus        94 ~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~  128 (128)
T 1h8a_C           94 HKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV  128 (128)
T ss_dssp             HHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred             HHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999999887753

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.98  E-value=6e-33  Score=234.23  Aligned_cols=105  Identities=46%  Similarity=0.930  Sum_probs=99.6

Q ss_pred             CCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCccCccCHHHHHHHHHHHHHhCCChH
Q 013300           11 KLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWS   90 (446)
Q Consensus        11 klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kLlelv~~yGnkWs   90 (446)
                      .+++|+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||++|.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~   79 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA   79 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence            47899999999999999999999888999999998 99999999999999999999999999999999999999999999


Q ss_pred             HHhhhCCCCCHHHHHHHHHHHhHHHH
Q 013300           91 QIAAQLPGRTDNEIKNLWNSCLKKKL  116 (446)
Q Consensus        91 kIAk~LpgRT~~qcKnRW~~iLkkkl  116 (446)
                      .||+.|+|||+++||+||+.++++++
T Consensus        80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~  105 (105)
T 1gv2_A           80 EIAKLLPGRTDNAIKNHWNSTMRRKV  105 (105)
T ss_dssp             HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999988753

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.97  E-value=1.1e-32  Score=234.52  Aligned_cols=104  Identities=31%  Similarity=0.603  Sum_probs=100.4

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCccCccCHHHHHHHHHHHHHhCCChHHHh
Q 013300           14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIA   93 (446)
Q Consensus        14 KG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kLlelv~~yGnkWskIA   93 (446)
                      ||+||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.+++|+||+|||.+|+++|.+||++|..||
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia   79 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS   79 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence            68999999999999999999889999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCHHHHHHHHHHHhHHHHHh
Q 013300           94 AQLPGRTDNEIKNLWNSCLKKKLRQ  118 (446)
Q Consensus        94 k~LpgRT~~qcKnRW~~iLkkklr~  118 (446)
                      +.|+|||+++||+||+.++++..+.
T Consensus        80 ~~l~gRt~~~~k~rw~~l~r~~~~~  104 (107)
T 2k9n_A           80 KFLKNRSDNNIRNRWMMIARHRAKH  104 (107)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence            9999999999999999999887654

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.97  E-value=2.5e-32  Score=239.83  Aligned_cols=110  Identities=33%  Similarity=0.623  Sum_probs=104.6

Q ss_pred             CccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCccCccCHHHHHHHHHHHHHhCCChHHH
Q 013300           13 RKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQI   92 (446)
Q Consensus        13 kKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kLlelv~~yGnkWskI   92 (446)
                      .||+||+|||++|+++|.+||.++|..||..|+ +|++.|||+||.++|+|.+++|+||+|||++|+++|.+||++|+.|
T Consensus         1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I   79 (131)
T 3zqc_A            1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI   79 (131)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence            379999999999999999999989999999999 9999999999999999999999999999999999999999999999


Q ss_pred             hhhCCCCCHHHHHHHHHHHhHHHHHhcCCCC
Q 013300           93 AAQLPGRTDNEIKNLWNSCLKKKLRQRGIDP  123 (446)
Q Consensus        93 Ak~LpgRT~~qcKnRW~~iLkkklr~~g~~p  123 (446)
                      |++|+|||+++||+||+.+|++.+....++.
T Consensus        80 a~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~  110 (131)
T 3zqc_A           80 AKLIPGRTDNAIKNRWNSSISKRISTNSNHK  110 (131)
T ss_dssp             TTTSTTCCHHHHHHHHHHTTGGGCCCCTTSC
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHhhcCCCcc
Confidence            9999999999999999999999877665444

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.97  E-value=6.3e-32  Score=236.07  Aligned_cols=106  Identities=33%  Similarity=0.633  Sum_probs=101.0

Q ss_pred             ccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCccCccCHHHHHHHHHHHHHhCC
Q 013300            8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN   87 (446)
Q Consensus         8 ~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kLlelv~~yGn   87 (446)
                      .++..+||+||+|||++|+++|.+||. +|..||+.|+ +|+++|||+||.++|+|.+++++||+|||++|+++|.+||+
T Consensus         5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~   82 (126)
T 3osg_A            5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR   82 (126)
T ss_dssp             C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence            467789999999999999999999996 8999999999 99999999999999999999999999999999999999999


Q ss_pred             ChHHHhhhCCCCCHHHHHHHHHHHhHHH
Q 013300           88 RWSQIAAQLPGRTDNEIKNLWNSCLKKK  115 (446)
Q Consensus        88 kWskIAk~LpgRT~~qcKnRW~~iLkkk  115 (446)
                      +|.+||+.|+|||+++||+||+.++++.
T Consensus        83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           83 QWAIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999999887764

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.97  E-value=3.1e-31  Score=238.96  Aligned_cols=113  Identities=43%  Similarity=0.870  Sum_probs=108.0

Q ss_pred             CCcccccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCccCccCHHHHHHHHHHH
Q 013300            3 RHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELH   82 (446)
Q Consensus         3 R~~~~~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kLlelv   82 (446)
                      ||..+++|.+++|+||+|||++|+++|.+||..+|..||+.|+ +|++.||++||.++|+|.+++++||+|||.+|++++
T Consensus        47 Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~  125 (159)
T 1h89_C           47 RWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH  125 (159)
T ss_dssp             HHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHH
T ss_pred             HHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHH
Confidence            7888899999999999999999999999999878999999998 999999999999999999999999999999999999


Q ss_pred             HHhCCChHHHhhhCCCCCHHHHHHHHHHHhHHHH
Q 013300           83 AVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL  116 (446)
Q Consensus        83 ~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkkkl  116 (446)
                      .+||++|++||+.|+|||+++||+||+.++++++
T Consensus       126 ~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~  159 (159)
T 1h89_C          126 KRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV  159 (159)
T ss_dssp             HHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred             HHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999999887653

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.96  E-value=7e-31  Score=236.71  Aligned_cols=122  Identities=27%  Similarity=0.583  Sum_probs=77.3

Q ss_pred             CCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCccCccCHHHHHHHHHHHHHhCC-ChH
Q 013300           12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN-RWS   90 (446)
Q Consensus        12 lkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kLlelv~~yGn-kWs   90 (446)
                      +++++||+|||++|+++|.+||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||. +|.
T Consensus         4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~   82 (159)
T 1h89_C            4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS   82 (159)
T ss_dssp             ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence            5699999999999999999999889999999999 99999999999999999999999999999999999999995 799


Q ss_pred             HHhhhCCCCCHHHHHHHHHHHhHHHHHhcCCCCCCCCCCccccc
Q 013300           91 QIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVEN  134 (446)
Q Consensus        91 kIAk~LpgRT~~qcKnRW~~iLkkklr~~g~~p~~~k~l~ele~  134 (446)
                      .||+.|+|||+.|||+||+.+|++.+++..|++.++..|.++..
T Consensus        83 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~  126 (159)
T 1h89_C           83 VIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHK  126 (159)
T ss_dssp             HHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHH
Confidence            99999999999999999999999988888888888877766553

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.83  E-value=3.2e-22  Score=174.50  Aligned_cols=95  Identities=23%  Similarity=0.538  Sum_probs=68.2

Q ss_pred             cccccCcccCccccchhhhcccCCCCccCccCHHHHHHHHHHHHHhCC-ChHHHhhhCCCCCHHHHHHHHHHHhHHHHHh
Q 013300           40 VPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN-RWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQ  118 (446)
Q Consensus        40 IAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kLlelv~~yGn-kWskIAk~LpgRT~~qcKnRW~~iLkkklr~  118 (446)
                      ||+.|+ +|++.||++||.++|+|.+++|+||+|||++|+++|.+||. +|.+||..|+|||+.||++||+.+|++.+.+
T Consensus         1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~   79 (128)
T 1h8a_C            1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK   79 (128)
T ss_dssp             ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred             CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence            788898 99999999999999999999999999999999999999995 7999999999999999999999999998888


Q ss_pred             cCCCCCCCCCCcccccC
Q 013300          119 RGIDPVTHKPLSEVENG  135 (446)
Q Consensus       119 ~g~~p~~~k~l~ele~k  135 (446)
                      ..|+++++..|.++...
T Consensus        80 ~~WT~eEd~~L~~~~~~   96 (128)
T 1h8a_C           80 TSWTEEEDRIIYQAHKR   96 (128)
T ss_dssp             SCCCHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHH
Confidence            88998888877766543

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=3.8e-21  Score=152.26  Aligned_cols=67  Identities=28%  Similarity=0.643  Sum_probs=64.3

Q ss_pred             ccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCccCccCHHHH
Q 013300            8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEE   75 (446)
Q Consensus         8 ~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED   75 (446)
                      ..+.+++|+||+|||++|+++|.+||.++|..||..|+ +|+++|||+||.++|+|.+++++||+|||
T Consensus         3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            35788999999999999999999999889999999999 99999999999999999999999999997

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.71  E-value=6.5e-18  Score=162.70  Aligned_cols=105  Identities=20%  Similarity=0.279  Sum_probs=91.8

Q ss_pred             CCCCccCCCHHHHHHHHHHHHHhCCCC-----ccccccccCcccCccccchhhhcccCCCCc------------------
Q 013300           10 QKLRKGLWSPEEDEKLLRHITKYGHGC-----WSSVPKQAGLQRCGKSCRLRWINYLRPDLK------------------   66 (446)
Q Consensus        10 ~klkKG~WT~EEDe~LlelV~kyG~~n-----W~kIAk~m~~gRt~kQCR~RW~n~L~P~lk------------------   66 (446)
                      +.++|++||+|||++|+++|.++|..+     |.+||+.|+ |||+.|||+||+.+|.+.+.                  
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn   82 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN   82 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence            467899999999999999999998643     999999999 99999999999999999986                  


Q ss_pred             -----------cCccCHHHHHHHHHHHHH-h--------------------------------CC---------------
Q 013300           67 -----------RGTFSQQEENLIIELHAV-L--------------------------------GN---------------   87 (446)
Q Consensus        67 -----------rg~WT~EED~kLlelv~~-y--------------------------------Gn---------------   87 (446)
                                 +.+||.|||-.|...+.+ |                                |.               
T Consensus        83 ~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  162 (246)
T 1ign_A           83 LIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRT  162 (246)
T ss_dssp             BCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CC
T ss_pred             ceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhcc
Confidence                       899999999999999877 2                                11               


Q ss_pred             ----------ChHHHhhhCCCCCHHHHHHHHHHHhHHH
Q 013300           88 ----------RWSQIAAQLPGRTDNEIKNLWNSCLKKK  115 (446)
Q Consensus        88 ----------kWskIAk~LpgRT~~qcKnRW~~iLkkk  115 (446)
                                .|.+||+.+|+||.+++|+||+..|+..
T Consensus       163 ~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          163 QSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             ccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                      5999999999999999999999887654

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.68  E-value=1.9e-17  Score=133.62  Aligned_cols=58  Identities=22%  Similarity=0.354  Sum_probs=47.2

Q ss_pred             chhhhcccCCCCccCccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHh
Q 013300           54 RLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCL  112 (446)
Q Consensus        54 R~RW~n~L~P~lkrg~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iL  112 (446)
                      --||.++|+|++++++||+|||++|+++|++||++|++||+.| |||+++||+||+.+.
T Consensus        10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~   67 (73)
T 2llk_A           10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK   67 (73)
T ss_dssp             ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred             CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence            3589999999999999999999999999999999999999999 999999999998643

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.66  E-value=1.4e-17  Score=146.06  Aligned_cols=83  Identities=22%  Similarity=0.385  Sum_probs=77.9

Q ss_pred             ccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccc----CcccCccccchhhhcccC-----CCCccC-ccCHHHHHH
Q 013300            8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQA----GLQRCGKSCRLRWINYLR-----PDLKRG-TFSQQEENL   77 (446)
Q Consensus         8 ~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m----~~gRt~kQCR~RW~n~L~-----P~lkrg-~WT~EED~k   77 (446)
                      .+++.++++||+|||+.|+++|.+||.++|..|++.+    + +||..+|++||.++|+     |.++++ +|++||+.+
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r   89 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR   89 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence            4577889999999999999999999988999999985    5 8999999999999998     999999 999999999


Q ss_pred             HHHHHHHhCCChHH
Q 013300           78 IIELHAVLGNRWSQ   91 (446)
Q Consensus        78 Llelv~~yGnkWsk   91 (446)
                      |++++..+|++|.+
T Consensus        90 v~~~h~~~gn~~~~  103 (121)
T 2juh_A           90 VLAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHccchhc
Confidence            99999999999976

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.65  E-value=2e-16  Score=126.04  Aligned_cols=65  Identities=23%  Similarity=0.326  Sum_probs=59.4

Q ss_pred             cCCCCccCccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhHHHHHhcCCCCCCC
Q 013300           61 LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTH  126 (446)
Q Consensus        61 L~P~lkrg~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkkklr~~g~~p~~~  126 (446)
                      ++|.+++++||+|||++|+++|.+||++|..||++|+|||++|||+||+.++++.++. ++++...
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~   67 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETP   67 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCcc
Confidence            5789999999999999999999999999999999999999999999999999888776 6666544

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=2.2e-16  Score=123.54  Aligned_cols=60  Identities=22%  Similarity=0.371  Sum_probs=57.2

Q ss_pred             ccCCCCccCccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhHHHHHhcC
Q 013300           60 YLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG  120 (446)
Q Consensus        60 ~L~P~lkrg~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkkklr~~g  120 (446)
                      +|+|.+++++||+|||++|+++|++||++|.+||+ |+|||++|||+||+.+|++.+++..
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence            79999999999999999999999999999999999 8899999999999999999988654

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.64  E-value=8.2e-17  Score=123.64  Aligned_cols=57  Identities=25%  Similarity=0.521  Sum_probs=54.1

Q ss_pred             cCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCc
Q 013300            9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLK   66 (446)
Q Consensus         9 k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lk   66 (446)
                      .+.+++++||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|+++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence            4788999999999999999999999878999999999 99999999999999999875

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.63  E-value=1.1e-16  Score=140.61  Aligned_cols=79  Identities=22%  Similarity=0.335  Sum_probs=73.2

Q ss_pred             cCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccc----CcccCccccchhhhccc-----CCCCccCccCHHH-HHHH
Q 013300            9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQA----GLQRCGKSCRLRWINYL-----RPDLKRGTFSQQE-ENLI   78 (446)
Q Consensus         9 k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m----~~gRt~kQCR~RW~n~L-----~P~lkrg~WT~EE-D~kL   78 (446)
                      +.+.++++||+|||+.|+++|++||.++|..|++.+    . +||..+|++||.+++     +|.++++.|+++| +.+|
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v  104 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV  104 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence            456789999999999999999999998999999964    5 899999999999999     8999999999999 8999


Q ss_pred             HHHHHHhCCC
Q 013300           79 IELHAVLGNR   88 (446)
Q Consensus        79 lelv~~yGnk   88 (446)
                      ++++..||++
T Consensus       105 ~~~h~~~g~~  114 (122)
T 2roh_A          105 LAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHhhH
Confidence            9999999974

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.63  E-value=8.9e-17  Score=120.17  Aligned_cols=52  Identities=46%  Similarity=0.924  Sum_probs=49.7

Q ss_pred             CCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCC
Q 013300           12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPD   64 (446)
Q Consensus        12 lkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~   64 (446)
                      +++|+||+|||++|+++|.+||.++|..||+.|+ +|++.|||+||.++|+|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            5799999999999999999999878999999999 999999999999999985

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=1.9e-16  Score=125.18  Aligned_cols=65  Identities=20%  Similarity=0.389  Sum_probs=61.4

Q ss_pred             CCCCccCccCHHHHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHHHHhHHHHHhcCCCCCCC
Q 013300           62 RPDLKRGTFSQQEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTH  126 (446)
Q Consensus        62 ~P~lkrg~WT~EED~kLlelv~~yG-nkWskIAk~LpgRT~~qcKnRW~~iLkkklr~~g~~p~~~  126 (446)
                      .|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.|||+||+.+|++.+++..|++.++
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            4678999999999999999999999 8999999999999999999999999999999999988775

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.61  E-value=1.5e-16  Score=118.81  Aligned_cols=52  Identities=33%  Similarity=0.669  Sum_probs=48.3

Q ss_pred             CCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCC
Q 013300           12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPD   64 (446)
Q Consensus        12 lkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~   64 (446)
                      +++++||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            5789999999999999999999878999999999 999999999999999985

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.59  E-value=3.3e-16  Score=123.65  Aligned_cols=65  Identities=23%  Similarity=0.381  Sum_probs=59.3

Q ss_pred             cccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCc-ccCccccchhhhcccCCCCccCccC
Q 013300            7 CYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGL-QRCGKSCRLRWINYLRPDLKRGTFS   71 (446)
Q Consensus         7 ~~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~-gRt~kQCR~RW~n~L~P~lkrg~WT   71 (446)
                      ..+++.++++||+|||++|+++|.+||.++|..||..|+. +|++.||++||.++|+|.+.++..+
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            3467788999999999999999999998899999999976 8999999999999999999987653

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.58  E-value=8.8e-16  Score=117.87  Aligned_cols=55  Identities=20%  Similarity=0.422  Sum_probs=51.2

Q ss_pred             CCCCccCccCHHHHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHHHHhHHHH
Q 013300           62 RPDLKRGTFSQQEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCLKKKL  116 (446)
Q Consensus        62 ~P~lkrg~WT~EED~kLlelv~~yG-nkWskIAk~LpgRT~~qcKnRW~~iLkkkl  116 (446)
                      +|.+++++||+|||++|+++|.+|| ++|.+||+.|+|||+.|||+||+.+|++.+
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i   58 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS   58 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence            5788999999999999999999999 699999999999999999999999887643

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.56  E-value=2.9e-15  Score=111.77  Aligned_cols=50  Identities=28%  Similarity=0.555  Sum_probs=46.1

Q ss_pred             CccCccCHHHHHHHHHHHHHhCC-ChHHHhhhCCCCCHHHHHHHHHHHhHH
Q 013300           65 LKRGTFSQQEENLIIELHAVLGN-RWSQIAAQLPGRTDNEIKNLWNSCLKK  114 (446)
Q Consensus        65 lkrg~WT~EED~kLlelv~~yGn-kWskIAk~LpgRT~~qcKnRW~~iLkk  114 (446)
                      +++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||+.+|++
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            47899999999999999999997 999999999999999999999998864

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.55  E-value=5.3e-15  Score=116.74  Aligned_cols=60  Identities=23%  Similarity=0.309  Sum_probs=54.5

Q ss_pred             cCCCCccCccCHHHHHHHHHHHHHhC-CChHHHhhhCC--CCCHHHHHHHHHHHhHHHHHhcC
Q 013300           61 LRPDLKRGTFSQQEENLIIELHAVLG-NRWSQIAAQLP--GRTDNEIKNLWNSCLKKKLRQRG  120 (446)
Q Consensus        61 L~P~lkrg~WT~EED~kLlelv~~yG-nkWskIAk~Lp--gRT~~qcKnRW~~iLkkklr~~g  120 (446)
                      ..+..++++||+|||++|+++|.+|| ++|..||+.|+  |||+.|||+||+.+|++.+.+..
T Consensus         4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~   66 (69)
T 1ity_A            4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSD   66 (69)
T ss_dssp             TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCC
Confidence            45667899999999999999999999 79999999999  99999999999999998766543

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.54  E-value=5.4e-15  Score=110.44  Aligned_cols=50  Identities=32%  Similarity=0.675  Sum_probs=46.8

Q ss_pred             CccCccCHHHHHHHHHHHHHhCC-ChHHHhhhCCCCCHHHHHHHHHHHhHH
Q 013300           65 LKRGTFSQQEENLIIELHAVLGN-RWSQIAAQLPGRTDNEIKNLWNSCLKK  114 (446)
Q Consensus        65 lkrg~WT~EED~kLlelv~~yGn-kWskIAk~LpgRT~~qcKnRW~~iLkk  114 (446)
                      +++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||+.+|++
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            57899999999999999999996 699999999999999999999988864

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.53  E-value=2.2e-15  Score=116.21  Aligned_cols=55  Identities=20%  Similarity=0.503  Sum_probs=51.6

Q ss_pred             cCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCC
Q 013300            9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPD   64 (446)
Q Consensus         9 k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~   64 (446)
                      .+.+++++||+|||++|+++|.+||.++|.+||+.|+ +|++.|||+||.++|.+.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence            3678999999999999999999999888999999999 999999999999999864

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.53  E-value=9.8e-15  Score=109.68  Aligned_cols=49  Identities=24%  Similarity=0.378  Sum_probs=46.4

Q ss_pred             ccCccCHHHHHHHHHHHHHhC-CChHHHhhhCC--CCCHHHHHHHHHHHhHH
Q 013300           66 KRGTFSQQEENLIIELHAVLG-NRWSQIAAQLP--GRTDNEIKNLWNSCLKK  114 (446)
Q Consensus        66 krg~WT~EED~kLlelv~~yG-nkWskIAk~Lp--gRT~~qcKnRW~~iLkk  114 (446)
                      ++++||+|||++|+++|.+|| ++|..||..|+  |||+.|||+||+.+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            478999999999999999999 79999999999  99999999999998864

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=1.2e-15  Score=119.44  Aligned_cols=59  Identities=24%  Similarity=0.320  Sum_probs=54.6

Q ss_pred             cccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCccC
Q 013300            7 CYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRG   68 (446)
Q Consensus         7 ~~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg   68 (446)
                      +++|.+++++||+|||++|+++|++||. +|.+||+ ++ +|++.|||+||.++|+|.++++
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence            6789999999999999999999999996 8999999 77 7999999999999999877664

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.51  E-value=3.1e-15  Score=117.44  Aligned_cols=56  Identities=27%  Similarity=0.520  Sum_probs=49.4

Q ss_pred             CCCccCCCHHHHHHHHHHHHHhCCCCccccccccC-cccCccccchhhhcccCCCCc
Q 013300           11 KLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAG-LQRCGKSCRLRWINYLRPDLK   66 (446)
Q Consensus        11 klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~-~gRt~kQCR~RW~n~L~P~lk   66 (446)
                      ..+|++||+|||++|+++|.+||.++|..||+.++ .+|++.|||+||.++++|.++
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            35789999999999999999999989999999754 289999999999999998764

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.51  E-value=1.7e-14  Score=111.14  Aligned_cols=52  Identities=19%  Similarity=0.318  Sum_probs=48.7

Q ss_pred             CCCCccCccCHHHHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHHHHhH
Q 013300           62 RPDLKRGTFSQQEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCLK  113 (446)
Q Consensus        62 ~P~lkrg~WT~EED~kLlelv~~yG-nkWskIAk~LpgRT~~qcKnRW~~iLk  113 (446)
                      .+.+.+++||+|||++|+++|++|| ++|.+||++|++||+.|||+||+.+|.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence            3578899999999999999999999 899999999999999999999998774

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.48  E-value=3.7e-14  Score=111.28  Aligned_cols=51  Identities=22%  Similarity=0.419  Sum_probs=46.3

Q ss_pred             CccCccCHHHHHHHHHHHHHhC-CChHHHhhhCC--CCCHHHHHHHHHHHhHHH
Q 013300           65 LKRGTFSQQEENLIIELHAVLG-NRWSQIAAQLP--GRTDNEIKNLWNSCLKKK  115 (446)
Q Consensus        65 lkrg~WT~EED~kLlelv~~yG-nkWskIAk~Lp--gRT~~qcKnRW~~iLkkk  115 (446)
                      .++++||+|||++|+++|.+|| ++|.+||+.++  |||+.|||+||++++|+.
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g   62 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   62 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence            4789999999999999999999 68999999965  999999999999988754

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=5.5e-15  Score=118.12  Aligned_cols=60  Identities=25%  Similarity=0.412  Sum_probs=55.7

Q ss_pred             cCCCCccCCCHHHHHHHHHHHHHhCC-----CCccccccccCcccCccccchhhhcccCCCCccCc
Q 013300            9 KQKLRKGLWSPEEDEKLLRHITKYGH-----GCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGT   69 (446)
Q Consensus         9 k~klkKG~WT~EEDe~LlelV~kyG~-----~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~   69 (446)
                      ++.+++++||+|||++|+++|.+||.     .+|..||+.|+ +|++.|||+||++||.+.++.|.
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence            68899999999999999999999996     68999999999 99999999999999998777664

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=2.9e-14  Score=113.91  Aligned_cols=58  Identities=17%  Similarity=0.257  Sum_probs=53.2

Q ss_pred             CCCCccCccCHHHHHHHHHHHHHhC------CChHHHhhhCCCCCHHHHHHHHHHHhHHHHHhc
Q 013300           62 RPDLKRGTFSQQEENLIIELHAVLG------NRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQR  119 (446)
Q Consensus        62 ~P~lkrg~WT~EED~kLlelv~~yG------nkWskIAk~LpgRT~~qcKnRW~~iLkkklr~~  119 (446)
                      +|.+++++||+|||++|+++|.+||      ++|.+||++|+|||+.|||+||+.+|++.++..
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g   66 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG   66 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence            5788999999999999999999999      789999999999999999999999888766543

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.46  E-value=1.6e-14  Score=108.49  Aligned_cols=50  Identities=28%  Similarity=0.547  Sum_probs=46.6

Q ss_pred             CccCCCHHHHHHHHHHHHHhCCCCccccccccCc-ccCccccchhhhcccC
Q 013300           13 RKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGL-QRCGKSCRLRWINYLR   62 (446)
Q Consensus        13 kKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~-gRt~kQCR~RW~n~L~   62 (446)
                      ++|+||+|||++|+++|.+||.++|..||..|+. +|++.||++||.+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            5899999999999999999998899999999875 6999999999999875

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.45  E-value=2e-14  Score=110.31  Aligned_cols=52  Identities=19%  Similarity=0.431  Sum_probs=47.9

Q ss_pred             CCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhccc
Q 013300           10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL   61 (446)
Q Consensus        10 ~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L   61 (446)
                      ..+.+++||+|||++|+++|.+||.++|..||+.|+.+|+++|||+||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            3467899999999999999999998899999999986799999999999875

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.45  E-value=1.1e-13  Score=106.28  Aligned_cols=50  Identities=24%  Similarity=0.401  Sum_probs=46.2

Q ss_pred             CCCccCccCHHHHHHHHHHHHHhC-CChHHHhhhCC-CCCHHHHHHHHHHHh
Q 013300           63 PDLKRGTFSQQEENLIIELHAVLG-NRWSQIAAQLP-GRTDNEIKNLWNSCL  112 (446)
Q Consensus        63 P~lkrg~WT~EED~kLlelv~~yG-nkWskIAk~Lp-gRT~~qcKnRW~~iL  112 (446)
                      ..+.+++||+|||++|+++|++|| ++|.+||++|+ +||+.|||+||..++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            346789999999999999999999 89999999999 999999999998754

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.44  E-value=2.7e-14  Score=115.21  Aligned_cols=62  Identities=21%  Similarity=0.298  Sum_probs=48.3

Q ss_pred             CCCcccccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCcc
Q 013300            2 GRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKR   67 (446)
Q Consensus         2 gR~~~~~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkr   67 (446)
                      +|+.+++.|++++|+||+|||++|+++|.+||.. |..||+.|  +|++.||++||. .|....+.
T Consensus        11 ~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l--gRt~~q~knRw~-~L~~~~~~   72 (73)
T 2llk_A           11 RENLYFQGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL--GRSASSVKDRCR-LMKDTCNT   72 (73)
T ss_dssp             --------CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH--TSCHHHHHHHHH-HCSCCCSC
T ss_pred             cceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh--CCCHHHHHHHHH-HHHHHccC
Confidence            5899999999999999999999999999999955 99999999  699999999997 45555444

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.43  E-value=2.2e-14  Score=125.11  Aligned_cols=75  Identities=19%  Similarity=0.346  Sum_probs=68.2

Q ss_pred             CCCCccCccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhHHHHHhcCCCCCCCCCCcccccCC
Q 013300           62 RPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVENGE  136 (446)
Q Consensus        62 ~P~lkrg~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkkklr~~g~~p~~~k~l~ele~k~  136 (446)
                      .+..++|+||+|||++|+++|.+||.+|..||+.|+||+..||++||++.|.+.+.+..|+++++..|.++..+-
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~   80 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEY   80 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHH
Confidence            346789999999999999999999999999999999999999999999999999999999999988887776443

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.43  E-value=2.2e-14  Score=125.73  Aligned_cols=88  Identities=20%  Similarity=0.347  Sum_probs=66.3

Q ss_pred             CCcccccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCccCccCHHHHHHHHHHH
Q 013300            3 RHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELH   82 (446)
Q Consensus         3 R~~~~~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kLlelv   82 (446)
                      ||.+++.|.+++|+||+|||++|+++|.+|| ..|..||+.|+ ||++.||+.||.++|++.+..++|+.+--    ...
T Consensus        43 Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~~----~p~  116 (131)
T 3zqc_A           43 RWFNHLDPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEIL----LPD  116 (131)
T ss_dssp             HHHHHTSTTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCCC----CCC
T ss_pred             HHhhccCccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCccccc----Cch
Confidence            7888999999999999999999999999999 56999999999 99999999999999999999998876531    001


Q ss_pred             HHhCCChHHHhhhC
Q 013300           83 AVLGNRWSQIAAQL   96 (446)
Q Consensus        83 ~~yGnkWskIAk~L   96 (446)
                      ...+.+|..|++.|
T Consensus       117 ~~kk~~~~~i~k~~  130 (131)
T 3zqc_A          117 RSKKRKAADVPKKL  130 (131)
T ss_dssp             CC------------
T ss_pred             hhhhhhhhhcchhc
Confidence            12235677777765

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.42  E-value=2.2e-14  Score=120.65  Aligned_cols=71  Identities=23%  Similarity=0.525  Sum_probs=64.4

Q ss_pred             CCccCccCHHHHHHHHHHHHHhCC-ChHHHhhhCCCCCHHHHHHHHHHHhHHHHHhcCCCCCCCCCCccccc
Q 013300           64 DLKRGTFSQQEENLIIELHAVLGN-RWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVEN  134 (446)
Q Consensus        64 ~lkrg~WT~EED~kLlelv~~yGn-kWskIAk~LpgRT~~qcKnRW~~iLkkklr~~g~~p~~~k~l~ele~  134 (446)
                      ++++|+||+|||++|+++|.+||. +|..||+.|+||++.||++||...|.+.+.+..|+++++..|.++..
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~   72 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHK   72 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHH
Confidence            478999999999999999999996 79999999999999999999999999888888888888877776654

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.42  E-value=2.6e-14  Score=113.73  Aligned_cols=59  Identities=20%  Similarity=0.332  Sum_probs=54.1

Q ss_pred             cccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCcc
Q 013300            7 CYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKR   67 (446)
Q Consensus         7 ~~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkr   67 (446)
                      ...|.+++++||+|||++|+++|.+||. +|..||+.|+ +|++.||+.||.++|.+.++.
T Consensus         2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence            3568899999999999999999999995 8999999999 999999999999999876655

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.11  E-value=2e-14  Score=119.25  Aligned_cols=57  Identities=21%  Similarity=0.248  Sum_probs=53.4

Q ss_pred             cccCCCCccCccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhHHH
Q 013300           59 NYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKK  115 (446)
Q Consensus        59 n~L~P~lkrg~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkkk  115 (446)
                      ..++|.+++++||+|||++|+++|.+||++|..||..|+|||++|||+||+.++++.
T Consensus         8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A            8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            356788999999999999999999999999999999999999999999999888764

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.36  E-value=3.4e-13  Score=115.69  Aligned_cols=79  Identities=24%  Similarity=0.327  Sum_probs=67.7

Q ss_pred             cccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccccc----CcccCccccchhhhccc-----CCCCccCccCHHHHHH
Q 013300            7 CYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQA----GLQRCGKSCRLRWINYL-----RPDLKRGTFSQQEENL   77 (446)
Q Consensus         7 ~~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m----~~gRt~kQCR~RW~n~L-----~P~lkrg~WT~EED~k   77 (446)
                      -.+++.++++||+|||++|+++|.+||.++|..|++.+    + +||..+|++||.+.+     +|.+++|.-+++|-..
T Consensus         6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~-~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~   84 (105)
T 2aje_A            6 EDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDAD-HRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLN   84 (105)
T ss_dssp             ---CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTT-CCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHH
Confidence            45677899999999999999999999998999999965    5 899999999999998     6999999888777665


Q ss_pred             -HHHHHHHhC
Q 013300           78 -IIELHAVLG   86 (446)
Q Consensus        78 -Llelv~~yG   86 (446)
                       +++++..+|
T Consensus        85 rv~~~~~~~~   94 (105)
T 2aje_A           85 RVLNAHGYWT   94 (105)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence             788887754

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.36  E-value=1e-13  Score=117.59  Aligned_cols=69  Identities=19%  Similarity=0.355  Sum_probs=63.2

Q ss_pred             cCccCHHHHHHHHHHHHHhCC-ChHHHhhhCCCCCHHHHHHHHHHHhHHHHHhcCCCCCCCCCCcccccC
Q 013300           67 RGTFSQQEENLIIELHAVLGN-RWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVENG  135 (446)
Q Consensus        67 rg~WT~EED~kLlelv~~yGn-kWskIAk~LpgRT~~qcKnRW~~iLkkklr~~g~~p~~~k~l~ele~k  135 (446)
                      +|+||+|||++|+++|.+||. +|..||..|+||++.||+.||.++|.+.+....|++.++..|.++...
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~   70 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAE   70 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHH
Confidence            589999999999999999995 899999999999999999999999999999999999888877766543

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.35  E-value=5.1e-13  Score=110.11  Aligned_cols=69  Identities=25%  Similarity=0.434  Sum_probs=61.2

Q ss_pred             cCCCHHHHHHHHHHHHHhCCCCccccccc----cCcccCccccchhhhccc-----CCCCccC-ccCHHHHHHHHHHHHH
Q 013300           15 GLWSPEEDEKLLRHITKYGHGCWSSVPKQ----AGLQRCGKSCRLRWINYL-----RPDLKRG-TFSQQEENLIIELHAV   84 (446)
Q Consensus        15 G~WT~EEDe~LlelV~kyG~~nW~kIAk~----m~~gRt~kQCR~RW~n~L-----~P~lkrg-~WT~EED~kLlelv~~   84 (446)
                      ++||+|||++|+++|.+||.++|..|++.    ++ +||+.+|++||.+++     +|.+++| +..++...+++++++.
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            47999999999999999999899999995    67 999999999999988     6776665 6777888889998876

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.29  E-value=1.2e-12  Score=106.72  Aligned_cols=53  Identities=23%  Similarity=0.446  Sum_probs=48.6

Q ss_pred             ccccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcc
Q 013300            6 CCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY   60 (446)
Q Consensus         6 ~~~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~   60 (446)
                      ...+....+++||+|||++|+++|.+|| ++|.+||+.|+ +|++.||+.||.++
T Consensus        10 ~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~   62 (79)
T 2yus_A           10 AKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL   62 (79)
T ss_dssp             CCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred             CCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            3445667799999999999999999999 88999999999 99999999999988

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.29  E-value=2.2e-12  Score=104.01  Aligned_cols=51  Identities=12%  Similarity=0.263  Sum_probs=47.0

Q ss_pred             CCCccCccCHHHHHHHHHHHHHhC----CChHHHhhhCCCCCHHHHHHHHHHHhH
Q 013300           63 PDLKRGTFSQQEENLIIELHAVLG----NRWSQIAAQLPGRTDNEIKNLWNSCLK  113 (446)
Q Consensus        63 P~lkrg~WT~EED~kLlelv~~yG----nkWskIAk~LpgRT~~qcKnRW~~iLk  113 (446)
                      +...+++||.|||.+|++++++||    ++|.+||++|||||.+|||+||+.+++
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            456789999999999999999999    689999999999999999999998764

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.27  E-value=2.7e-12  Score=104.72  Aligned_cols=48  Identities=17%  Similarity=0.313  Sum_probs=44.7

Q ss_pred             CCccCccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHH
Q 013300           64 DLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSC  111 (446)
Q Consensus        64 ~lkrg~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~i  111 (446)
                      ...+++||+|||++|+++|++||++|.+||++|++||+.|||+||..+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            456789999999999999999999999999999999999999999753

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.21  E-value=1.9e-11  Score=100.74  Aligned_cols=49  Identities=24%  Similarity=0.472  Sum_probs=45.2

Q ss_pred             CccCHHHHHHHHHHHHHhCC-ChHHHhhh----CCCCCHHHHHHHHHHHhHHHH
Q 013300           68 GTFSQQEENLIIELHAVLGN-RWSQIAAQ----LPGRTDNEIKNLWNSCLKKKL  116 (446)
Q Consensus        68 g~WT~EED~kLlelv~~yGn-kWskIAk~----LpgRT~~qcKnRW~~iLkkkl  116 (446)
                      ++||+|||+.|+++|++||. +|+.|++.    |+|||+.+||+||+++++...
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~   54 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence            48999999999999999995 99999996    899999999999999987653

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.20  E-value=1.6e-11  Score=96.23  Aligned_cols=50  Identities=20%  Similarity=0.405  Sum_probs=45.9

Q ss_pred             CccCccCHHHHHHHHHHHHHhCCChHHHh---hhCCCCCHHHHHHHHHHHhHH
Q 013300           65 LKRGTFSQQEENLIIELHAVLGNRWSQIA---AQLPGRTDNEIKNLWNSCLKK  114 (446)
Q Consensus        65 lkrg~WT~EED~kLlelv~~yGnkWskIA---k~LpgRT~~qcKnRW~~iLkk  114 (446)
                      -++.+||+|||+.|+++|++||.+|+.|+   .+|++||+.++|+||+.+.|.
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            36789999999999999999999999999   567999999999999988764

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.82  E-value=1.7e-12  Score=107.73  Aligned_cols=55  Identities=20%  Similarity=0.428  Sum_probs=50.8

Q ss_pred             cccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCC
Q 013300            7 CYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRP   63 (446)
Q Consensus         7 ~~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P   63 (446)
                      ...+.+++|+||+|||++|+++|.+||. +|..||..|+ +||+.||+.||.++|..
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR   63 (89)
Confidence            4567899999999999999999999995 7999999999 99999999999998863

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.18  E-value=8.2e-12  Score=120.48  Aligned_cols=71  Identities=20%  Similarity=0.402  Sum_probs=57.7

Q ss_pred             CCCccCccCHHHHHHHHHHHHHhCCC------hHHHhhhCCCCCHHHHHHHHHHHhHHHHHhcCCCCCCCCCCccccc
Q 013300           63 PDLKRGTFSQQEENLIIELHAVLGNR------WSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVEN  134 (446)
Q Consensus        63 P~lkrg~WT~EED~kLlelv~~yGnk------WskIAk~LpgRT~~qcKnRW~~iLkkklr~~g~~p~~~k~l~ele~  134 (446)
                      +.+++++||+|||++|+++|++||++      |.+||++|+|||+++||+||+..|++.+... |...++..+...++
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~ded~~Li~d~~   80 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKFGKLVRDDD   80 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECBCTTSCBCBCTT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-cccCcchhhhhccC
Confidence            35788999999999999999999975      9999999999999999999999999987633 66666665554443

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.17  E-value=3e-11  Score=106.03  Aligned_cols=55  Identities=25%  Similarity=0.456  Sum_probs=50.2

Q ss_pred             cCCCCccCccCHHHHHHHHHHHHHhCC-ChHHHhhh----CCCCCHHHHHHHHHHHhHHH
Q 013300           61 LRPDLKRGTFSQQEENLIIELHAVLGN-RWSQIAAQ----LPGRTDNEIKNLWNSCLKKK  115 (446)
Q Consensus        61 L~P~lkrg~WT~EED~kLlelv~~yGn-kWskIAk~----LpgRT~~qcKnRW~~iLkkk  115 (446)
                      +.+..++++||.|||+.|+++|++||. +|+.|++.    |++||+.+||+||+++++..
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~   70 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   70 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence            456678999999999999999999996 99999998    48999999999999999864

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.16  E-value=3.7e-11  Score=103.06  Aligned_cols=53  Identities=23%  Similarity=0.411  Sum_probs=47.9

Q ss_pred             CCCccCccCHHHHHHHHHHHHHhCC-ChHHHhhhC----CCCCHHHHHHHHHHHhHHH
Q 013300           63 PDLKRGTFSQQEENLIIELHAVLGN-RWSQIAAQL----PGRTDNEIKNLWNSCLKKK  115 (446)
Q Consensus        63 P~lkrg~WT~EED~kLlelv~~yGn-kWskIAk~L----pgRT~~qcKnRW~~iLkkk  115 (446)
                      +..++++||+|||+.|+++|++||. +|+.|++.+    ++||+.+||+||+++++..
T Consensus         9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~   66 (105)
T 2aje_A            9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA   66 (105)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            3568899999999999999999995 999999975    8999999999999988754

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.15  E-value=7.8e-12  Score=100.78  Aligned_cols=55  Identities=13%  Similarity=0.413  Sum_probs=49.3

Q ss_pred             cccCCCCccCCCHHHHHHHHHHHHHhCC---CCccccccccCcccCccccchhhhcccC
Q 013300            7 CYKQKLRKGLWSPEEDEKLLRHITKYGH---GCWSSVPKQAGLQRCGKSCRLRWINYLR   62 (446)
Q Consensus         7 ~~k~klkKG~WT~EEDe~LlelV~kyG~---~nW~kIAk~m~~gRt~kQCR~RW~n~L~   62 (446)
                      ..++...+++||+|||++|++++.+||.   .+|.+||+.|+ ||+..||+.||.+++.
T Consensus        11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred             ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            3456788999999999999999999993   57999999999 9999999999998765

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.14  E-value=6.3e-11  Score=99.56  Aligned_cols=60  Identities=23%  Similarity=0.413  Sum_probs=50.5

Q ss_pred             ccCccCHHHHHHHHHHHHHhC----CChHHHhhhCCCCCHHHHHHHHHHHhHHH-HHhcCCCCCC
Q 013300           66 KRGTFSQQEENLIIELHAVLG----NRWSQIAAQLPGRTDNEIKNLWNSCLKKK-LRQRGIDPVT  125 (446)
Q Consensus        66 krg~WT~EED~kLlelv~~yG----nkWskIAk~LpgRT~~qcKnRW~~iLkkk-lr~~g~~p~~  125 (446)
                      .+++||.|||++|++++.+||    ++|.+||+.|||||.++||+||+.+++.. ....|..|..
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~P   71 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPFP   71 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC-
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence            467999999999999999996    67999999999999999999999988765 4455555543

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.10  E-value=1.2e-10  Score=102.35  Aligned_cols=54  Identities=24%  Similarity=0.461  Sum_probs=48.2

Q ss_pred             CCCccCccCHHHHHHHHHHHHHhCC-ChHHHhhh----CCCCCHHHHHHHHHHHhHHHH
Q 013300           63 PDLKRGTFSQQEENLIIELHAVLGN-RWSQIAAQ----LPGRTDNEIKNLWNSCLKKKL  116 (446)
Q Consensus        63 P~lkrg~WT~EED~kLlelv~~yGn-kWskIAk~----LpgRT~~qcKnRW~~iLkkkl  116 (446)
                      ...++++||.|||+.|+++|++||. +|+.|++.    |++||+.+||+||+++++...
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~   85 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS   85 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence            3457899999999999999999995 99999997    489999999999999987653

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.90  E-value=2.7e-09  Score=89.82  Aligned_cols=67  Identities=15%  Similarity=0.232  Sum_probs=61.1

Q ss_pred             ccccchhhhcccCCCCccCccCHHHHHHHHHHHHHhCCChHHHhhhC-----CCCCHHHHHHHHHHHhHHHHHhcC
Q 013300           50 GKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQL-----PGRTDNEIKNLWNSCLKKKLRQRG  120 (446)
Q Consensus        50 ~kQCR~RW~n~L~P~lkrg~WT~EED~kLlelv~~yGnkWskIAk~L-----pgRT~~qcKnRW~~iLkkklr~~g  120 (446)
                      ..=+.++|.++|.+    ++||.||+..|++|+++||.+|..|+..+     ++||..++|+||..+.++.++.++
T Consensus        17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~   88 (93)
T 3hm5_A           17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            34578999999976    89999999999999999999999999999     589999999999999998888774

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.86  E-value=2.8e-09  Score=82.41  Aligned_cols=47  Identities=9%  Similarity=0.086  Sum_probs=43.5

Q ss_pred             ccCccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHh
Q 013300           66 KRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCL  112 (446)
Q Consensus        66 krg~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iL  112 (446)
                      ..++||+||++++++++.+||.+|..||..|++||..+|+.+|+...
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence            45799999999999999999999999999999999999999997543

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.84  E-value=5.8e-10  Score=93.71  Aligned_cols=48  Identities=17%  Similarity=0.388  Sum_probs=43.4

Q ss_pred             CccCCCHHHHHHHHHHHHHhC---CCCccccccccCcccCccccchhhhccc
Q 013300           13 RKGLWSPEEDEKLLRHITKYG---HGCWSSVPKQAGLQRCGKSCRLRWINYL   61 (446)
Q Consensus        13 kKG~WT~EEDe~LlelV~kyG---~~nW~kIAk~m~~gRt~kQCR~RW~n~L   61 (446)
                      .+++||+|||++|++++.+||   ...|.+||+.|+ |||..+|++||.+++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            468899999999999999997   356999999999 999999999998764

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.79  E-value=4.8e-09  Score=84.24  Aligned_cols=57  Identities=14%  Similarity=0.267  Sum_probs=47.6

Q ss_pred             CCccCccCHHHHHHHHHHHHHhC----CChHHHhhhCCCCCHHHHHHHHHHHhHHHHHhcCC
Q 013300           64 DLKRGTFSQQEENLIIELHAVLG----NRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGI  121 (446)
Q Consensus        64 ~lkrg~WT~EED~kLlelv~~yG----nkWskIAk~LpgRT~~qcKnRW~~iLkkklr~~g~  121 (446)
                      ..+.+.||.|||++|.+++++|+    ++|.+||++| |||..+|++||+.+.+......|.
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~~~~~G~   65 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCSPGM   65 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCCCCSCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhcCccCCC
Confidence            34678999999999999999997    5799999998 999999999999876554333333

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.62  E-value=1.3e-08  Score=79.77  Aligned_cols=49  Identities=14%  Similarity=0.219  Sum_probs=43.5

Q ss_pred             CCccCCCHHHHHHHHHHHHHhCCCCcccccc---ccCcccCccccchhhhcccC
Q 013300           12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPK---QAGLQRCGKSCRLRWINYLR   62 (446)
Q Consensus        12 lkKG~WT~EEDe~LlelV~kyG~~nW~kIAk---~m~~gRt~kQCR~RW~n~L~   62 (446)
                      ..+++||+|||+.|+++|++||. +|..|+.   .+. +|+...+++||++...
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence            36889999999999999999996 8999994   556 9999999999987654

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.61  E-value=1.5e-08  Score=78.35  Aligned_cols=52  Identities=10%  Similarity=0.168  Sum_probs=46.1

Q ss_pred             cccCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcc
Q 013300            7 CYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY   60 (446)
Q Consensus         7 ~~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~   60 (446)
                      ..+.+-..++||+||++++++++.+|| .+|..||..|+ +|+..||+.+|...
T Consensus         5 ~~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~-~rt~~~~v~~Yy~~   56 (61)
T 2eqr_A            5 SSGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE-RKSVPDCVLYYYLT   56 (61)
T ss_dssp             CCCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred             cccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            345556789999999999999999999 68999999999 99999999999654

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.56  E-value=6.9e-08  Score=92.66  Aligned_cols=49  Identities=12%  Similarity=0.289  Sum_probs=45.7

Q ss_pred             ccCccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhHH
Q 013300           66 KRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKK  114 (446)
Q Consensus        66 krg~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkk  114 (446)
                      ..++||+||++++++++.+||++|..||+.+++||..|||++|+...++
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            4579999999999999999999999999999999999999999876655

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.41  E-value=1.6e-07  Score=98.52  Aligned_cols=45  Identities=13%  Similarity=0.293  Sum_probs=42.0

Q ss_pred             CccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHh
Q 013300           68 GTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCL  112 (446)
Q Consensus        68 g~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iL  112 (446)
                      .+||+||-+++++++.+||.+|..||+.++.||..|||++|....
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~k  425 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR  425 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            489999999999999999999999999999999999999997533

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.36  E-value=3.1e-07  Score=74.11  Aligned_cols=46  Identities=20%  Similarity=0.262  Sum_probs=42.2

Q ss_pred             cCccCHHHHHHHHHHHHHhC----CChHHHhhhCCCCCHHHHHHHHHHHh
Q 013300           67 RGTFSQQEENLIIELHAVLG----NRWSQIAAQLPGRTDNEIKNLWNSCL  112 (446)
Q Consensus        67 rg~WT~EED~kLlelv~~yG----nkWskIAk~LpgRT~~qcKnRW~~iL  112 (446)
                      ...||.||+++|.+++..|+    ++|.+||..++|||..+|+.||..++
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~   57 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP   57 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            46899999999999999998    36999999999999999999998764

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.31  E-value=1.2e-07  Score=76.06  Aligned_cols=50  Identities=16%  Similarity=0.300  Sum_probs=43.5

Q ss_pred             CCCccCCCHHHHHHHHHHHHHhCC---CCccccccccCcccCccccchhhhcccC
Q 013300           11 KLRKGLWSPEEDEKLLRHITKYGH---GCWSSVPKQAGLQRCGKSCRLRWINYLR   62 (446)
Q Consensus        11 klkKG~WT~EEDe~LlelV~kyG~---~nW~kIAk~m~~gRt~kQCR~RW~n~L~   62 (446)
                      ...++.||.|||++|.+++.+|+.   +.|..||..+  +|+..+|+.||....+
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~   57 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence            345789999999999999999974   5699999997  5999999999987654

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.21  E-value=1e-06  Score=68.07  Aligned_cols=46  Identities=20%  Similarity=0.352  Sum_probs=41.4

Q ss_pred             cCccCHHHHHHHHHHHHHh--------CCC-hHHHhh-hCCCCCHHHHHHHHHHHh
Q 013300           67 RGTFSQQEENLIIELHAVL--------GNR-WSQIAA-QLPGRTDNEIKNLWNSCL  112 (446)
Q Consensus        67 rg~WT~EED~kLlelv~~y--------Gnk-WskIAk-~LpgRT~~qcKnRW~~iL  112 (446)
                      |.+||+|||..|++.|.+|        |++ |.++++ .++++|-.+||+||...|
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l   57 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL   57 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence            5789999999999999999        433 999999 799999999999998655

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.21  E-value=3.2e-07  Score=70.89  Aligned_cols=48  Identities=21%  Similarity=0.400  Sum_probs=43.0

Q ss_pred             ccCCCHHHHHHHHHHHHHh--------CCCCcccccc-ccCcccCccccchhhhcccC
Q 013300           14 KGLWSPEEDEKLLRHITKY--------GHGCWSSVPK-QAGLQRCGKSCRLRWINYLR   62 (446)
Q Consensus        14 KG~WT~EEDe~LlelV~ky--------G~~nW~kIAk-~m~~gRt~kQCR~RW~n~L~   62 (446)
                      |.+||+|||+.|++.|.+|        |..-|+++++ .++ +++-.+||+||.++|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence            6789999999999999999        4445999999 788 9999999999999875

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.19  E-value=5.3e-07  Score=86.55  Aligned_cols=50  Identities=22%  Similarity=0.421  Sum_probs=45.6

Q ss_pred             CCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccC
Q 013300           11 KLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLR   62 (446)
Q Consensus        11 klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~   62 (446)
                      ....++||+||++++++++.+|| ++|..||+.|+ +|+..||+.+|.++..
T Consensus       130 ~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          130 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            34578999999999999999999 68999999999 9999999999988764

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.16  E-value=5.1e-07  Score=72.89  Aligned_cols=48  Identities=25%  Similarity=0.526  Sum_probs=43.3

Q ss_pred             ccCCCHHHHHHHHHHHHHhCC---CCccccccccCcccCccccchhhhcccC
Q 013300           14 KGLWSPEEDEKLLRHITKYGH---GCWSSVPKQAGLQRCGKSCRLRWINYLR   62 (446)
Q Consensus        14 KG~WT~EEDe~LlelV~kyG~---~nW~kIAk~m~~gRt~kQCR~RW~n~L~   62 (446)
                      ...||.+|+++|.+++..|+.   ++|..||..|+ +|+..+|+.||...+.
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            467999999999999999975   56999999999 9999999999987654

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=97.99  E-value=1.5e-05  Score=79.53  Aligned_cols=101  Identities=17%  Similarity=0.283  Sum_probs=80.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccch-------hhhc---------c-------------------
Q 013300           16 LWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRL-------RWIN---------Y-------------------   60 (446)
Q Consensus        16 ~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~-------RW~n---------~-------------------   60 (446)
                      -||..|...++.++.+||..+|..||..|+ +++...++.       ||..         .                   
T Consensus       112 ~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~  190 (304)
T 1ofc_X          112 AWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD  190 (304)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            499999999999999999999999999998 899877753       2210         0                   


Q ss_pred             ------------c---CCCCccCccCHHHHHHHHHHHHHhCC----ChHHHhh------------hCCCCCHHHHHHHHH
Q 013300           61 ------------L---RPDLKRGTFSQQEENLIIELHAVLGN----RWSQIAA------------QLPGRTDNEIKNLWN  109 (446)
Q Consensus        61 ------------L---~P~lkrg~WT~EED~kLlelv~~yGn----kWskIAk------------~LpgRT~~qcKnRW~  109 (446)
                                  |   .+..+...||+|||..||-++.+||-    .|..|..            ++..||+.+|..|..
T Consensus       191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~  270 (304)
T 1ofc_X          191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN  270 (304)
T ss_dssp             HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred             HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence                        0   01224468999999999999999994    5999962            356799999999999


Q ss_pred             HHhHHHHH
Q 013300          110 SCLKKKLR  117 (446)
Q Consensus       110 ~iLkkklr  117 (446)
                      .+++-..+
T Consensus       271 tLi~~iek  278 (304)
T 1ofc_X          271 TLITLIER  278 (304)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98876544

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.96  E-value=1.6e-05  Score=66.66  Aligned_cols=49  Identities=16%  Similarity=0.305  Sum_probs=45.0

Q ss_pred             ccCHHHHHHHHHHHHHhCC---ChHHHhhhCCCCCHHHHHHHHHHHhHHHHH
Q 013300           69 TFSQQEENLIIELHAVLGN---RWSQIAAQLPGRTDNEIKNLWNSCLKKKLR  117 (446)
Q Consensus        69 ~WT~EED~kLlelv~~yGn---kWskIAk~LpgRT~~qcKnRW~~iLkkklr  117 (446)
                      -||.|||+.||..+++-|.   .|..||+.|.+|+.+||++||+.+++-.-.
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~   86 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT   86 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence            6999999999999999996   799999999999999999999998875544

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.96  E-value=1.4e-05  Score=62.11  Aligned_cols=47  Identities=13%  Similarity=0.243  Sum_probs=43.8

Q ss_pred             CCCccCccCHHHHHHHHHHHHHhCCChHHHhh-hCCCCCHHHHHHHHH
Q 013300           63 PDLKRGTFSQQEENLIIELHAVLGNRWSQIAA-QLPGRTDNEIKNLWN  109 (446)
Q Consensus        63 P~lkrg~WT~EED~kLlelv~~yGnkWskIAk-~LpgRT~~qcKnRW~  109 (446)
                      |.+...+||+||-++..+++.+||.+|..|++ .|++|+..+|...|.
T Consensus         5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY   52 (63)
T 2yqk_A            5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY   52 (63)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence            66788899999999999999999999999999 589999999998886

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.83  E-value=4.5e-05  Score=64.19  Aligned_cols=62  Identities=16%  Similarity=0.277  Sum_probs=53.8

Q ss_pred             hhhhcccCCCCccCccCHHHHHHHHHHHHHhCCChHHHhhhCC-----CCCHHHHHHHHHHHhHHHHHhcC
Q 013300           55 LRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLP-----GRTDNEIKNLWNSCLKKKLRQRG  120 (446)
Q Consensus        55 ~RW~n~L~P~lkrg~WT~EED~kLlelv~~yGnkWskIAk~Lp-----gRT~~qcKnRW~~iLkkklr~~g  120 (446)
                      +.|..+|.    ...||.||...|++|+++|+-+|..|+..+.     .||-.++|+||..+.++.++.++
T Consensus        22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~   88 (93)
T 4iej_A           22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence            45666664    3689999999999999999999999999874     79999999999999998887664

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.93  E-value=4e-06  Score=66.85  Aligned_cols=45  Identities=16%  Similarity=0.355  Sum_probs=41.9

Q ss_pred             ccCHHHHHHHHHHHHHhCC---ChHHHhhhCCCCCHHHHHHHHHHHhHH
Q 013300           69 TFSQQEENLIIELHAVLGN---RWSQIAAQLPGRTDNEIKNLWNSCLKK  114 (446)
Q Consensus        69 ~WT~EED~kLlelv~~yGn---kWskIAk~LpgRT~~qcKnRW~~iLkk  114 (446)
                      -||.|||+.||..+++-|.   .|..||+.| +|+++||++||..+++-
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L   63 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL   63 (70)
Confidence            6999999999999999996   799999999 99999999999987753

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.69  E-value=5.3e-06  Score=67.05  Aligned_cols=43  Identities=21%  Similarity=0.363  Sum_probs=38.7

Q ss_pred             cCccCHHHHHHHHHHHHHhCC----ChHHHhhhCCCCCHHHHHHHHH
Q 013300           67 RGTFSQQEENLIIELHAVLGN----RWSQIAAQLPGRTDNEIKNLWN  109 (446)
Q Consensus        67 rg~WT~EED~kLlelv~~yGn----kWskIAk~LpgRT~~qcKnRW~  109 (446)
                      .+.||.||+++|..+++.|+.    +|.+||..+||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            458999999999999999984    7999999999999999999884

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.66  E-value=9.1e-06  Score=65.71  Aligned_cols=44  Identities=11%  Similarity=0.195  Sum_probs=39.0

Q ss_pred             ccCCCHHHHHHHHHHHHHhCC---CCccccccccCcccCccccchhhh
Q 013300           14 KGLWSPEEDEKLLRHITKYGH---GCWSSVPKQAGLQRCGKSCRLRWI   58 (446)
Q Consensus        14 KG~WT~EEDe~LlelV~kyG~---~nW~kIAk~m~~gRt~kQCR~RW~   58 (446)
                      .+.||.||+++|..++.+|+.   ..|.+||..|| ||+..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence            467999999999999999975   36999999999 999999999985

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.48  E-value=5.6e-05  Score=58.73  Aligned_cols=50  Identities=10%  Similarity=0.175  Sum_probs=44.3

Q ss_pred             ccCCCCccCCCHHHHHHHHHHHHHhCCCCcccccc-ccCcccCccccchhhhc
Q 013300            8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPK-QAGLQRCGKSCRLRWIN   59 (446)
Q Consensus         8 ~k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk-~m~~gRt~kQCR~RW~n   59 (446)
                      -.|.+....||+||-++..+++.+|| .+|..|++ .++ +|+..+|.+-|..
T Consensus         3 ~~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            3 SGSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLP-NKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred             CCCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCcHHHHHHHHhc
Confidence            35778889999999999999999999 57999999 588 9999999987753

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.41  E-value=0.00022  Score=59.70  Aligned_cols=44  Identities=20%  Similarity=0.141  Sum_probs=41.3

Q ss_pred             cCccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHH
Q 013300           67 RGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNS  110 (446)
Q Consensus        67 rg~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~  110 (446)
                      ...||+||.++..+++..||.+|..||..|++||..+|-..|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence            46899999999999999999999999999999999999998864

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.38  E-value=0.00027  Score=56.05  Aligned_cols=43  Identities=21%  Similarity=0.259  Sum_probs=40.5

Q ss_pred             cCccCHHHHHHHHHHHHHhCCChHHHhh-hCCCCCHHHHHHHHH
Q 013300           67 RGTFSQQEENLIIELHAVLGNRWSQIAA-QLPGRTDNEIKNLWN  109 (446)
Q Consensus        67 rg~WT~EED~kLlelv~~yGnkWskIAk-~LpgRT~~qcKnRW~  109 (446)
                      ..+||+||-++..+++.+||.+|..|++ .|++||..+|...|.
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY   51 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY   51 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence            4689999999999999999999999999 599999999999887

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.21  E-value=0.00012  Score=76.89  Aligned_cols=46  Identities=22%  Similarity=0.444  Sum_probs=42.7

Q ss_pred             CccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcc
Q 013300           13 RKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY   60 (446)
Q Consensus        13 kKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~   60 (446)
                      ...+||.||-+++++++.+|| .+|..||+.++ +|+..|||..|.++
T Consensus       379 ~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg-TKT~~Qvk~fy~~~  424 (482)
T 2xag_B          379 CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNY  424 (482)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            468999999999999999999 68999999999 99999999998764

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.11  E-value=9.6e-05  Score=62.16  Aligned_cols=47  Identities=11%  Similarity=0.258  Sum_probs=41.3

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCccccccccC----cccCccccchhhhccc
Q 013300           14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAG----LQRCGKSCRLRWINYL   61 (446)
Q Consensus        14 KG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~----~gRt~kQCR~RW~n~L   61 (446)
                      ...||.||+..|++++++|+ -.|..|+..+.    .+|+..++++||....
T Consensus        30 ~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~   80 (93)
T 3hm5_A           30 DDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             BTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence            48999999999999999999 45999999983    2799999999997654

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.02  E-value=0.00046  Score=55.97  Aligned_cols=49  Identities=22%  Similarity=0.438  Sum_probs=40.7

Q ss_pred             cCccCHHHHHHHHHHHHHhCC----------ChHHHhhhCC----CCCHHHHHHHHHHHhHHH
Q 013300           67 RGTFSQQEENLIIELHAVLGN----------RWSQIAAQLP----GRTDNEIKNLWNSCLKKK  115 (446)
Q Consensus        67 rg~WT~EED~kLlelv~~yGn----------kWskIAk~Lp----gRT~~qcKnRW~~iLkkk  115 (446)
                      ...||.+|-..||+++.++..          .|..||..|.    .||+.||+++|.++.+..
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y   66 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF   66 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            468999999999999976431          4999999973    699999999999866554

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=96.70  E-value=0.003  Score=58.40  Aligned_cols=100  Identities=12%  Similarity=0.176  Sum_probs=68.2

Q ss_pred             CccCCCHHHHHHHHHHHHHhC--CCCccccccc--cCcccCccccch-------hhhccc--------------------
Q 013300           13 RKGLWSPEEDEKLLRHITKYG--HGCWSSVPKQ--AGLQRCGKSCRL-------RWINYL--------------------   61 (446)
Q Consensus        13 kKG~WT~EEDe~LlelV~kyG--~~nW~kIAk~--m~~gRt~kQCR~-------RW~n~L--------------------   61 (446)
                      ....||+.|-..|++++.+||  ...|..|+..  +. +|+...+++       ++...+                    
T Consensus         6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~   84 (211)
T 4b4c_A            6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGP   84 (211)
T ss_dssp             --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHHHHHHHC-----------------CC
T ss_pred             cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccch
Confidence            456799999999999999999  5679999864  33 455443332       000000                    


Q ss_pred             ---------------------------------------C-----CCCccCccCHHHHHHHHHHHHHhC-CChHHHhhh-
Q 013300           62 ---------------------------------------R-----PDLKRGTFSQQEENLIIELHAVLG-NRWSQIAAQ-   95 (446)
Q Consensus        62 ---------------------------------------~-----P~lkrg~WT~EED~kLlelv~~yG-nkWskIAk~-   95 (446)
                                                             -     +......||.+||..||..+.+|| ++|..|-.. 
T Consensus        85 ~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~  164 (211)
T 4b4c_A           85 TFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDP  164 (211)
T ss_dssp             EEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCS
T ss_pred             hhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhCh
Confidence                                                   0     001123699999999999999999 999999663 


Q ss_pred             -C--C----------CCCHHHHHHHHHHHhH
Q 013300           96 -L--P----------GRTDNEIKNLWNSCLK  113 (446)
Q Consensus        96 -L--p----------gRT~~qcKnRW~~iLk  113 (446)
                       |  .          .++...+..|-..+|+
T Consensus       165 ~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~  195 (211)
T 4b4c_A          165 DLSLTHKILPDDPDKKPQAKQLQTRADYLIK  195 (211)
T ss_dssp             SSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred             hcCccccccccccccCCChHHHHHHHHHHHH
Confidence             1  1          2457789999776665

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.70  E-value=0.00068  Score=53.73  Aligned_cols=44  Identities=16%  Similarity=0.157  Sum_probs=39.8

Q ss_pred             CccCCCHHHHHHHHHHHHHhCCCCcccccc-ccCcccCccccchhhh
Q 013300           13 RKGLWSPEEDEKLLRHITKYGHGCWSSVPK-QAGLQRCGKSCRLRWI   58 (446)
Q Consensus        13 kKG~WT~EEDe~LlelV~kyG~~nW~kIAk-~m~~gRt~kQCR~RW~   58 (446)
                      ....||+||-++..+++.+|| .+|..|++ .++ +|+..+|.+-|.
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY   51 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLP-WKSLTSIIEYYY   51 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCS-SSCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCCHHHHHHHHH
Confidence            466899999999999999999 57999999 588 999999998775

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=96.67  E-value=0.00072  Score=56.53  Aligned_cols=43  Identities=14%  Similarity=0.306  Sum_probs=39.7

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhh
Q 013300           14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWI   58 (446)
Q Consensus        14 KG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~   58 (446)
                      ...||+||.+++.+++..|| .+|..||..++ +|+..+|...|.
T Consensus        43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~-~Kt~~~cV~~YY   85 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYY   85 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCT-TCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHh
Confidence            56799999999999999999 67999999999 999999998774

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=96.61  E-value=0.006  Score=62.40  Aligned_cols=102  Identities=18%  Similarity=0.316  Sum_probs=78.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhccc----------------------------------
Q 013300           16 LWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL----------------------------------   61 (446)
Q Consensus        16 ~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L----------------------------------   61 (446)
                      -|+.-|=..++.++.+||..+-..||..|+.+++...++ +|...+                                  
T Consensus       125 ~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L  203 (374)
T 2y9y_A          125 NWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL  203 (374)
T ss_dssp             CSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            599999999999999999999999999996467766665 221110                                  


Q ss_pred             --------C----------CC-CccCccCHHHHHHHHHHHHHhC----CChHHHhhh------------CCCCCHHHHHH
Q 013300           62 --------R----------PD-LKRGTFSQQEENLIIELHAVLG----NRWSQIAAQ------------LPGRTDNEIKN  106 (446)
Q Consensus        62 --------~----------P~-lkrg~WT~EED~kLlelv~~yG----nkWskIAk~------------LpgRT~~qcKn  106 (446)
                              +          +. .+...||+|||..||-++.+||    +.|.+|-..            |..||+..|..
T Consensus       204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r  283 (374)
T 2y9y_A          204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR  283 (374)
T ss_dssp             HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred             HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence                    0          11 1345799999999999999999    469999444            35699999999


Q ss_pred             HHHHHhHHHHHh
Q 013300          107 LWNSCLKKKLRQ  118 (446)
Q Consensus       107 RW~~iLkkklr~  118 (446)
                      |...+++-..+.
T Consensus       284 Rc~tLi~~IeKE  295 (374)
T 2y9y_A          284 RGNTLLQCLEKE  295 (374)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH
Confidence            999999765443

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.29  E-value=0.00056  Score=55.48  Aligned_cols=49  Identities=20%  Similarity=0.489  Sum_probs=39.7

Q ss_pred             CccCCCHHHHHHHHHHHHHhCC---------CCccccccccC---cccCccccchhhhccc
Q 013300           13 RKGLWSPEEDEKLLRHITKYGH---------GCWSSVPKQAG---LQRCGKSCRLRWINYL   61 (446)
Q Consensus        13 kKG~WT~EEDe~LlelV~kyG~---------~nW~kIAk~m~---~gRt~kQCR~RW~n~L   61 (446)
                      +...||.+|..+|++++..+..         .-|..||..|.   ..|++.||+.+|.+..
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            5788999999999999986421         14999999753   4799999999998653

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=95.69  E-value=0.004  Score=52.29  Aligned_cols=47  Identities=21%  Similarity=0.361  Sum_probs=41.4

Q ss_pred             CCccCCCHHHHHHHHHHHHHhCC--CCccccccccCcccCccccchhhhc
Q 013300           12 LRKGLWSPEEDEKLLRHITKYGH--GCWSSVPKQAGLQRCGKSCRLRWIN   59 (446)
Q Consensus        12 lkKG~WT~EEDe~LlelV~kyG~--~nW~kIAk~m~~gRt~kQCR~RW~n   59 (446)
                      -+--.||.|||..|+..+++.|.  ..|..||+.++ +|++.|+++|++.
T Consensus        31 e~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~   79 (95)
T 1ug2_A           31 EKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRE   79 (95)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred             CEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHH
Confidence            34456999999999999999985  35999999998 8999999999975

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=94.63  E-value=0.0019  Score=51.53  Aligned_cols=48  Identities=15%  Similarity=0.290  Sum_probs=41.0

Q ss_pred             CccCCCHHHHHHHHHHHHHhCC--CCccccccccCcccCccccchhhhcccC
Q 013300           13 RKGLWSPEEDEKLLRHITKYGH--GCWSSVPKQAGLQRCGKSCRLRWINYLR   62 (446)
Q Consensus        13 kKG~WT~EEDe~LlelV~kyG~--~nW~kIAk~m~~gRt~kQCR~RW~n~L~   62 (446)
                      .--.||.|||..|+..+++.|.  .-|..||+.+  +|++.|+.+||...+.
T Consensus        13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK   62 (70)
Confidence            3457999999999999999986  3599999988  4999999999987543

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=93.78  E-value=0.2  Score=39.39  Aligned_cols=47  Identities=13%  Similarity=0.095  Sum_probs=40.4

Q ss_pred             CccCccCHHHHHHHHHHHHHhCCC---hHHHhhhC--CCCCHHHHHHHHHHH
Q 013300           65 LKRGTFSQQEENLIIELHAVLGNR---WSQIAAQL--PGRTDNEIKNLWNSC  111 (446)
Q Consensus        65 lkrg~WT~EED~kLlelv~~yGnk---WskIAk~L--pgRT~~qcKnRW~~i  111 (446)
                      ..+-.||+|..++.+++|.++|..   +..|.+.|  +|.|..+|+.|...+
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY   56 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            356689999999999999999954   88999997  589999999988653

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=92.37  E-value=0.057  Score=45.37  Aligned_cols=49  Identities=12%  Similarity=0.295  Sum_probs=40.4

Q ss_pred             CCccCCCHHHHHHHHHHHHHhCCCCccccccccC----cccCccccchhhhccc
Q 013300           12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAG----LQRCGKSCRLRWINYL   61 (446)
Q Consensus        12 lkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~----~gRt~kQCR~RW~n~L   61 (446)
                      ++...||.||...|++++++|+- .|--|+....    ..|+..++++||....
T Consensus        28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~   80 (93)
T 4iej_A           28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred             hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence            34578999999999999999994 5999998764    2688899999987653

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=91.14  E-value=0.34  Score=48.34  Aligned_cols=48  Identities=17%  Similarity=0.286  Sum_probs=42.0

Q ss_pred             cCccCHHHHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHHHHhHH
Q 013300           67 RGTFSQQEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCLKK  114 (446)
Q Consensus        67 rg~WT~EED~kLlelv~~yG-nkWskIAk~LpgRT~~qcKnRW~~iLkk  114 (446)
                      -+.||..|...++.++.+|| +.|..||..|+|+|...|+..+.....+
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r  158 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER  158 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            35799999999999999999 6899999999999999997776655544

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=88.17  E-value=0.68  Score=42.46  Aligned_cols=51  Identities=20%  Similarity=0.228  Sum_probs=41.6

Q ss_pred             CccCccCHHHHHHHHHHHHHhC---CChHHHhhh--CCCCCHHHHHHHHHHHhHHH
Q 013300           65 LKRGTFSQQEENLIIELHAVLG---NRWSQIAAQ--LPGRTDNEIKNLWNSCLKKK  115 (446)
Q Consensus        65 lkrg~WT~EED~kLlelv~~yG---nkWskIAk~--LpgRT~~qcKnRW~~iLkkk  115 (446)
                      -....||+.|-..|+.++.+||   .+|..|++.  |.+|+...|+..+..++..-
T Consensus         5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c   60 (211)
T 4b4c_A            5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC   60 (211)
T ss_dssp             ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence            3457899999999999999999   589999876  78999999998776655543

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=87.56  E-value=0.27  Score=48.18  Aligned_cols=28  Identities=46%  Similarity=0.916  Sum_probs=26.1

Q ss_pred             cCCCHHHHHHHHHHHHHhCCCCcccccc
Q 013300           15 GLWSPEEDEKLLRHITKYGHGCWSSVPK   42 (446)
Q Consensus        15 G~WT~EEDe~LlelV~kyG~~nW~kIAk   42 (446)
                      ..|+.+||..|+..|.+||.++|..|-.
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            4599999999999999999999999965

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=86.59  E-value=0.38  Score=37.77  Aligned_cols=49  Identities=14%  Similarity=0.203  Sum_probs=37.9

Q ss_pred             CCCccCCCHHHHHHHHHHHHHhCCCC---ccccccccCc-ccCccccchhhhcc
Q 013300           11 KLRKGLWSPEEDEKLLRHITKYGHGC---WSSVPKQAGL-QRCGKSCRLRWINY   60 (446)
Q Consensus        11 klkKG~WT~EEDe~LlelV~kyG~~n---W~kIAk~m~~-gRt~kQCR~RW~n~   60 (446)
                      +..+-.||+|..++.+++|.+.| .+   ++.|.+.|+. +.|..+++-|.+.|
T Consensus         4 ~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY   56 (64)
T 1irz_A            4 KKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            44678899999999999999999 44   5788777653 56777777665544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	446
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	3e-21
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	9e-11
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-19
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	6e-09
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	8e-17
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	2e-11
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	2e-16
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	6e-16
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	8e-07
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	6e-16
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	6e-06
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	3e-13
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	8e-11
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	1e-12
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	9e-10
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	2e-11
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	2e-11
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	1e-10
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	8e-08
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	3e-10
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	2e-07
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	3e-08
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	1e-06
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	1e-05

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.4 bits (209), Expect = 3e-21
 Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPD 64
          L KG W+ EED++L++ + KYG   WS + K     R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.7 bits (132), Expect = 9e-11
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 65  LKRGTFSQQEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCLK 113
           L +G ++++E+  +I+L    G  RWS IA  L GR   + +  W++ L 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.0 bits (195), Expect = 2e-19
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPD 64
          K  W+ EEDEKL + + + G   W  +       R    C+ RW   L P+
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.8 bits (119), Expect = 6e-09
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 67  RGTFSQQEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCLK 113
           +  ++++E+  + +L    G + W  IA  LP RTD + ++ W   L 
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.1 bits (179), Expect = 8e-17
 Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 14 KGLWSPEEDEKLLRHITKYGHG-----CWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRG 68
          K  ++ EEDE +L  + K          +  +         G S R R+  YL   L+  
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYV 59

Query: 69 TFSQQEENLIIELHAVLGN 87
              +   L+ +    L  
Sbjct: 60 YEVDKFGKLVRDDDGNLIK 78

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.0 bits (140), Expect = 2e-11
 Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 67  RGTFSQQEENLIIELHAVLGNR------WSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120
           + +F+ +E+  I+++      R      + +I+  +P  T N I++ +   L K+L    
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 60

Query: 121 IDPVTHKPLSE 131
                 K + +
Sbjct: 61  EVDKFGKLVRD 71

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 72.0 bits (176), Expect = 2e-16
 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 13/84 (15%)

Query: 17 WSPEEDEKLLRHITKYGHGCWSSVPKQA---GLQRCGKSCRLRWINYLR-----PDLKRG 68
          +S  E E L+  +   G G W  V  +A      R     + +W   +      P  +RG
Sbjct: 3  FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 69 TFSQQEE-NLIIELHAVLGNRWSQ 91
              Q+  + ++  HA     WSQ
Sbjct: 63 EPVPQDLLDRVLAAHA----YWSQ 82

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.6 bits (170), Expect = 6e-16
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 13 RKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQ-RCGKSCRLRWINYLRPDL 65
          +K  W+ EE E +   + KYG G W+++ K      R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (103), Expect = 8e-07
 Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 66  KRGTFSQQEENLIIELHAVLG-NRWSQIAAQ--LPGRTDNEIKNLWNSCLKKKL 116
           K+  ++ +E   +       G   W+ I+       RT   IK+ W +  +  +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (170), Expect = 6e-16
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 13 RKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQ-RCGKSCRLRWINYLR 62
          ++  W  EED+ L   + KYG G WS +        R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (97), Expect = 6e-06
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 66  KRGTFSQQEENLIIELHAVLGN-RWSQIAAQLP--GRTDNEIKNLWNSCLK 113
           KR  +  +E+  +       G   WS+I        RT   +K+ W +  K
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.4 bits (149), Expect = 3e-13
 Identities = 23/47 (48%), Positives = 36/47 (76%)

Query: 67  RGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLK 113
           + +++++E+ +I + H  LGNRW++IA  LPGRTDN IKN WNS ++
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.8 bits (132), Expect = 8e-11
 Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLR 62
          K  W+ EED  + +   +     W+ + K     R   + +  W + +R
Sbjct: 1  KTSWTEEEDRIIYQAHKRL-GNRWAEIAKLLP-GRTDNAIKNHWNSTMR 47

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (146), Expect = 1e-12
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 17 WSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEE 75
          W+ EE E   + + K+G   W+ + K  G  R     +     Y +  +K G   +   
Sbjct: 5  WTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKETPN 61

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (125), Expect = 9e-10
 Identities = 12/49 (24%), Positives = 26/49 (53%)

Query: 70  FSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQ 118
           ++ +E+ L  +  A  G RW++I+  +  RT  ++K+      K K++ 
Sbjct: 5   WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 53

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (139), Expect = 2e-11
 Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 1/54 (1%)

Query: 66  KRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQR 119
               +S+QE+    E        +  IA+ L  +T  E    +    KK    +
Sbjct: 16  VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL-TKKNENYK 68

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 2e-11
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 17 WSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60
          W+ +E+  LL  +   G G W  V  Q    +  + C   ++ Y
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 46

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (131), Expect = 1e-10
 Identities = 6/49 (12%), Positives = 23/49 (46%)

Query: 66  KRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKK 114
               ++ +E+ L ++     G  +  I+  +  ++  ++KN + +  ++
Sbjct: 4   CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 52

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (111), Expect = 8e-08
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 17 WSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLR 62
          W+ EE    ++ I KYG   + ++    G  +     +  ++NY R
Sbjct: 8  WTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 51

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (128), Expect = 3e-10
 Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 9  KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGL--QRCGKSCRLRW 57
          + +  +  W+  + + L   + +Y  G      K A     +  + C  R+
Sbjct: 7  RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 2e-07
 Identities = 7/51 (13%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 62  RPDLKRGTFSQQEENLIIELHAVLG----NRWSQIAAQLPGRTDNEIKNLW 108
           R       ++Q ++ L+            + W +IA  +P ++  +    +
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 48.0 bits (114), Expect = 3e-08
 Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 17 WSPEEDEKLLRHITKYGHGC---WSSVPKQAGLQRCGKSCRLRWINYLRPDLKR 67
          WS +E++   R +  Y       W++V +     R  +  +  +   L  D+K 
Sbjct: 4  WSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHY-EILVEDIKY 55

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 43.8 bits (103), Expect = 1e-06
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 70  FSQQEENLIIELHAVLG----NRWSQIAAQLPGRTDNEIKNLWNSCLKK-KLRQRGIDP 123
           +S +E        AV      +RW+ +A  + GRT  E+K  +   ++  K  + G  P
Sbjct: 4   WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVP 62

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 12/79 (15%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 38  SSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR---WSQIAA 94
            ++PK +    C                K   ++++ + +I+ +    G +   +S I+ 
Sbjct: 9   GALPKASEATVCAN-----NSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQ 63

Query: 95  QLPGRTDNEIKNLWNSCLK 113
           QL  +T  E+ + +   ++
Sbjct: 64  QLGNKTPVEVSHRFRELMQ 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	446
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.69
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.68
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.63
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.61
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.58
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.52
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.51
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.5
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.46
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.42
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.42
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.39
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.37
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.36
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.36
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.31
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.25
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.23
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.22
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.22
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.2
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.19
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.12
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.06
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.02
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.81
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.81
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.56
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.97
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.94
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.43
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.33
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	96.78
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.76
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.63
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.25
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	95.74
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	93.6
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	93.39
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	91.39
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	87.99
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	84.42

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=8.7e-20  Score=149.38  Aligned_cols=71  Identities=23%  Similarity=0.251  Sum_probs=65.4

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCC-----CccccccccCcccCccccchhhhcccCCCCccCccCHHHHHHHHHHHHHh
Q 013300           14 KGLWSPEEDEKLLRHITKYGHG-----CWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVL   85 (446)
Q Consensus        14 KG~WT~EEDe~LlelV~kyG~~-----nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kLlelv~~y   85 (446)
                      |++||+|||++|+++|.+||..     +|.+||+.|+ +||++|||+||.++|+|.+++++||++||.+|++++..+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lp-gRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~l   76 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   76 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcC-CCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhcc
Confidence            6899999999999999999864     4999999999 999999999999999999999999999999988766443

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=5.1e-18  Score=126.54  Aligned_cols=52  Identities=46%  Similarity=0.924  Sum_probs=50.0

Q ss_pred             CCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCC
Q 013300           12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPD   64 (446)
Q Consensus        12 lkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~   64 (446)
                      ++||+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|+
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            5799999999999999999999889999999999 999999999999999985

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=3.7e-17  Score=120.63  Aligned_cols=50  Identities=32%  Similarity=0.676  Sum_probs=48.1

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCC
Q 013300           14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPD   64 (446)
Q Consensus        14 KG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~   64 (446)
                      |++||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            68899999999999999999989999999999 999999999999999985

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=2.7e-16  Score=114.97  Aligned_cols=47  Identities=49%  Similarity=0.972  Sum_probs=44.9

Q ss_pred             cCccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhH
Q 013300           67 RGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLK  113 (446)
Q Consensus        67 rg~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iLk  113 (446)
                      +++||+|||++|+++|++||++|+.||++|||||+++||+||+.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999998774

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=5.3e-16  Score=115.47  Aligned_cols=50  Identities=32%  Similarity=0.686  Sum_probs=47.0

Q ss_pred             CccCccCHHHHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHHHHhHH
Q 013300           65 LKRGTFSQQEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCLKK  114 (446)
Q Consensus        65 lkrg~WT~EED~kLlelv~~yG-nkWskIAk~LpgRT~~qcKnRW~~iLkk  114 (446)
                      +.||+||+|||++|+++|++|| ++|..||+.|++||+.||++||+..|++
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            5789999999999999999999 6899999999999999999999988764

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.52  E-value=1e-15  Score=123.70  Aligned_cols=74  Identities=24%  Similarity=0.421  Sum_probs=61.0

Q ss_pred             cCCCHHHHHHHHHHHHHhCCCCcccccccc---CcccCccccchhhhccc-----CCCCccCccCHHHHHHHHHHHHHhC
Q 013300           15 GLWSPEEDEKLLRHITKYGHGCWSSVPKQA---GLQRCGKSCRLRWINYL-----RPDLKRGTFSQQEENLIIELHAVLG   86 (446)
Q Consensus        15 G~WT~EEDe~LlelV~kyG~~nW~kIAk~m---~~gRt~kQCR~RW~n~L-----~P~lkrg~WT~EED~kLlelv~~yG   86 (446)
                      .+||+|||++|+++|.+||.++|..|++.+   ..+|++.||++||.++|     .+..+++.|+++|   |+..|.+++
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~   77 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAH   77 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHH
Confidence            379999999999999999999999999853   23899999999999998     4677889999877   555555555


Q ss_pred             CChHH
Q 013300           87 NRWSQ   91 (446)
Q Consensus        87 nkWsk   91 (446)
                      .+|++
T Consensus        78 ~~wsq   82 (83)
T d2ckxa1          78 AYWSQ   82 (83)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            66764

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=3e-15  Score=122.16  Aligned_cols=67  Identities=19%  Similarity=0.333  Sum_probs=61.9

Q ss_pred             cCccCHHHHHHHHHHHHHhCCC------hHHHhhhCCCCCHHHHHHHHHHHhHHHHHhcCCCCCCCCCCcccc
Q 013300           67 RGTFSQQEENLIIELHAVLGNR------WSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVE  133 (446)
Q Consensus        67 rg~WT~EED~kLlelv~~yGnk------WskIAk~LpgRT~~qcKnRW~~iLkkklr~~g~~p~~~k~l~ele  133 (446)
                      |+.||+|||++|+++|.+||.+      |.+||+.|+|||++|||+||+..|.+.+.+..|+..+++.+.+..
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~   73 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDD   73 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHh
Confidence            5899999999999999999964      999999999999999999999999999999999999998776543

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=9.6e-15  Score=107.50  Aligned_cols=48  Identities=27%  Similarity=0.569  Sum_probs=45.2

Q ss_pred             cCccCHHHHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHHHHhHH
Q 013300           67 RGTFSQQEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCLKK  114 (446)
Q Consensus        67 rg~WT~EED~kLlelv~~yG-nkWskIAk~LpgRT~~qcKnRW~~iLkk  114 (446)
                      |++||+|||++|+++|.+|| ++|.+||+.|+|||+.|||+||++.|.+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            57899999999999999999 6899999999999999999999998864

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=5.8e-15  Score=110.79  Aligned_cols=53  Identities=28%  Similarity=0.548  Sum_probs=48.6

Q ss_pred             CccCCCHHHHHHHHHHHHHhCCCCccccccc--cCcccCccccchhhhcccCCCCc
Q 013300           13 RKGLWSPEEDEKLLRHITKYGHGCWSSVPKQ--AGLQRCGKSCRLRWINYLRPDLK   66 (446)
Q Consensus        13 kKG~WT~EEDe~LlelV~kyG~~nW~kIAk~--m~~gRt~kQCR~RW~n~L~P~lk   66 (446)
                      +|++||+|||++|+++|++||.++|..||+.  ++ +|++.||++||.+++++.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~-~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFV-NRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCS-SCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCC-CcCHHHHHHHHHHHhcCCCC
Confidence            5789999999999999999999899999987  55 89999999999999988764

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=8.4e-14  Score=104.35  Aligned_cols=50  Identities=20%  Similarity=0.387  Sum_probs=45.7

Q ss_pred             ccCccCHHHHHHHHHHHHHhC-CChHHHhhh--CCCCCHHHHHHHHHHHhHHH
Q 013300           66 KRGTFSQQEENLIIELHAVLG-NRWSQIAAQ--LPGRTDNEIKNLWNSCLKKK  115 (446)
Q Consensus        66 krg~WT~EED~kLlelv~~yG-nkWskIAk~--LpgRT~~qcKnRW~~iLkkk  115 (446)
                      ++.+||+|||++|+++|++|| ++|+.||+.  |++||+.||++||++++++.
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~   53 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   53 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCC
Confidence            478999999999999999999 689999998  56999999999999988764

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.2e-13  Score=102.52  Aligned_cols=48  Identities=25%  Similarity=0.398  Sum_probs=43.7

Q ss_pred             ccCccCHHHHHHHHHHHHHhC-CChHHHhhhC--CCCCHHHHHHHHHHHhH
Q 013300           66 KRGTFSQQEENLIIELHAVLG-NRWSQIAAQL--PGRTDNEIKNLWNSCLK  113 (446)
Q Consensus        66 krg~WT~EED~kLlelv~~yG-nkWskIAk~L--pgRT~~qcKnRW~~iLk  113 (446)
                      ++++||+|||++|+++|.+|| ++|+.||+.+  .+||+.|||+||+++.|
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            578999999999999999999 5999999985  59999999999998754

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2e-13  Score=104.54  Aligned_cols=53  Identities=23%  Similarity=0.366  Sum_probs=48.2

Q ss_pred             cCccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhHHHHHhc
Q 013300           67 RGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQR  119 (446)
Q Consensus        67 rg~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iLkkklr~~  119 (446)
                      ...||+|||++|++++.+||.+|..||++|++||+.|||+||+.++++..+..
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~   54 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCG   54 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSC
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcC
Confidence            35799999999999999999999999999999999999999999888765443

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=5.9e-14  Score=104.15  Aligned_cols=49  Identities=29%  Similarity=0.506  Sum_probs=44.1

Q ss_pred             CccCCCHHHHHHHHHHHHHhCCCCccccccccC-cccCccccchhhhccc
Q 013300           13 RKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAG-LQRCGKSCRLRWINYL   61 (446)
Q Consensus        13 kKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~-~gRt~kQCR~RW~n~L   61 (446)
                      ++++||+|||++|+++|.+||.++|..||+.++ .+|++.||++||.++.
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            588999999999999999999989999998643 2899999999998864

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=5.4e-14  Score=102.44  Aligned_cols=44  Identities=25%  Similarity=0.670  Sum_probs=42.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcc
Q 013300           16 LWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY   60 (446)
Q Consensus        16 ~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~   60 (446)
                      .||+|||++|+++|.+||.++|..||+.|+ +|++.|||.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~-~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            499999999999999999999999999999 99999999999876

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=8.5e-14  Score=101.51  Aligned_cols=47  Identities=23%  Similarity=0.533  Sum_probs=43.9

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccC
Q 013300           14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLR   62 (446)
Q Consensus        14 KG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~   62 (446)
                      |++||+|||++|+++|.+||. +|..||+.|+ +|++.||+.||.++|.
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLP-GRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCT-TCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcC-CCCHHHHHHHHHHHcC
Confidence            679999999999999999995 6999999999 9999999999998763

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1e-12  Score=95.52  Aligned_cols=43  Identities=23%  Similarity=0.417  Sum_probs=40.8

Q ss_pred             ccCHHHHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHHHH
Q 013300           69 TFSQQEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSC  111 (446)
Q Consensus        69 ~WT~EED~kLlelv~~yG-nkWskIAk~LpgRT~~qcKnRW~~i  111 (446)
                      .||.|||++|+++|++|| ++|..||++|++||+.|||+||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 6899999999999999999999865

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=4.3e-12  Score=96.06  Aligned_cols=50  Identities=14%  Similarity=0.274  Sum_probs=45.1

Q ss_pred             CCCCccCccCHHHHHHHHHHHHHhCC----ChHHHhhhCCCCCHHHHHHHHHHH
Q 013300           62 RPDLKRGTFSQQEENLIIELHAVLGN----RWSQIAAQLPGRTDNEIKNLWNSC  111 (446)
Q Consensus        62 ~P~lkrg~WT~EED~kLlelv~~yGn----kWskIAk~LpgRT~~qcKnRW~~i  111 (446)
                      .+...+++||+|||.+|+++|.+||.    +|.+||+.|+|||..||++||+.+
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            34567789999999999999999995    599999999999999999999764

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.9e-12  Score=98.01  Aligned_cols=51  Identities=16%  Similarity=0.495  Sum_probs=46.4

Q ss_pred             ccCCCCccCCCHHHHHHHHHHHHHhCCC---CccccccccCcccCccccchhhhc
Q 013300            8 YKQKLRKGLWSPEEDEKLLRHITKYGHG---CWSSVPKQAGLQRCGKSCRLRWIN   59 (446)
Q Consensus         8 ~k~klkKG~WT~EEDe~LlelV~kyG~~---nW~kIAk~m~~gRt~kQCR~RW~n   59 (446)
                      .+++..+++||+|||++|+++|.+||.+   +|..||+.|+ +|++.||+.||..
T Consensus         6 ~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~-~Rt~~qc~~R~~~   59 (60)
T d2cqra1           6 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKL   59 (60)
T ss_dssp             CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHH
T ss_pred             ccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            4567789999999999999999999975   4999999999 9999999999963

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.22  E-value=9.4e-12  Score=95.11  Aligned_cols=47  Identities=26%  Similarity=0.478  Sum_probs=43.0

Q ss_pred             CccCHHHHHHHHHHHHHhCC----ChHHHhhhCCCCCHHHHHHHHHHHhHH
Q 013300           68 GTFSQQEENLIIELHAVLGN----RWSQIAAQLPGRTDNEIKNLWNSCLKK  114 (446)
Q Consensus        68 g~WT~EED~kLlelv~~yGn----kWskIAk~LpgRT~~qcKnRW~~iLkk  114 (446)
                      .+||+|||.+|++++++||.    +|.+||.+|+|||..||++||+.+++.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~d   52 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED   52 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            48999999999999999995    499999999999999999999876654

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4.7e-13  Score=102.44  Aligned_cols=58  Identities=22%  Similarity=0.394  Sum_probs=51.6

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccCCCCccCccCHH
Q 013300           14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQ   73 (446)
Q Consensus        14 KG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~E   73 (446)
                      ..+||+|||++|+++|.+|| .+|..||+.|+ +|++.||+.||.+++.+..+.+.+...
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~-~Rt~~q~k~ry~~~~~~~~k~~~~~~~   59 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFG-RRWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKET   59 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCSCTTCCC
T ss_pred             CCCCCHHHHHHHHHHHHHhc-chHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            35799999999999999999 68999999999 999999999999999887776665543

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.20  E-value=1.1e-11  Score=99.79  Aligned_cols=53  Identities=23%  Similarity=0.407  Sum_probs=46.9

Q ss_pred             CccCHHHHHHHHHHHHHhC-CChHHHhhh----CCCCCHHHHHHHHHHHhHHHHHhcC
Q 013300           68 GTFSQQEENLIIELHAVLG-NRWSQIAAQ----LPGRTDNEIKNLWNSCLKKKLRQRG  120 (446)
Q Consensus        68 g~WT~EED~kLlelv~~yG-nkWskIAk~----LpgRT~~qcKnRW~~iLkkklr~~g  120 (446)
                      .+||.|||++|+++|.+|| ++|+.|++.    +++||+.|||+||+++|+.......
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~   58 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ   58 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGG
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcc
Confidence            3899999999999999999 589999986    6899999999999999987665433

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=1.5e-11  Score=101.76  Aligned_cols=73  Identities=12%  Similarity=0.135  Sum_probs=63.8

Q ss_pred             ccCcccCccccchhhhcccCCCCccCccCHHHHHHHHHHHHHhCCC---hHHHhhhCCCCCHHHHHHHHHHHhHHHH
Q 013300           43 QAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR---WSQIAAQLPGRTDNEIKNLWNSCLKKKL  116 (446)
Q Consensus        43 ~m~~gRt~kQCR~RW~n~L~P~lkrg~WT~EED~kLlelv~~yGnk---WskIAk~LpgRT~~qcKnRW~~iLkkkl  116 (446)
                      .++ ..+..+++-++.+..+.......||.|||++||+.++++|.+   |..||+.|+||+++|||+||..+++..-
T Consensus        10 ~~p-~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf~   85 (95)
T d1ug2a_          10 ALP-KASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFH   85 (95)
T ss_dssp             CCC-CCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred             cCC-CCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            344 567777888888888888888899999999999999999987   9999999999999999999998876553

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.12  E-value=2.3e-12  Score=98.54  Aligned_cols=44  Identities=18%  Similarity=0.445  Sum_probs=40.7

Q ss_pred             cCCCHHHHHHHHHHHHHhCCCC---ccccccccCcccCccccchhhhc
Q 013300           15 GLWSPEEDEKLLRHITKYGHGC---WSSVPKQAGLQRCGKSCRLRWIN   59 (446)
Q Consensus        15 G~WT~EEDe~LlelV~kyG~~n---W~kIAk~m~~gRt~kQCR~RW~n   59 (446)
                      .+||+|||++|+++|.+||.+.   |.+||..|+ +|++.||++||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~-gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            4799999999999999999764   999999999 9999999999953

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=7.1e-11  Score=90.38  Aligned_cols=47  Identities=13%  Similarity=0.302  Sum_probs=43.9

Q ss_pred             cCccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHHhH
Q 013300           67 RGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLK  113 (446)
Q Consensus        67 rg~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~iLk  113 (446)
                      ..+||+|||.+|++++..||.+|..||++|+|||..+|+++|+...+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            46899999999999999999999999999999999999999987654

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=6.9e-11  Score=91.28  Aligned_cols=46  Identities=20%  Similarity=0.119  Sum_probs=43.0

Q ss_pred             ccCccCHHHHHHHHHHHHHhCCChHHHhhhCCCCCHHHHHHHHHHH
Q 013300           66 KRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSC  111 (446)
Q Consensus        66 krg~WT~EED~kLlelv~~yGnkWskIAk~LpgRT~~qcKnRW~~i  111 (446)
                      ...+||+|||.+|++++.+||.+|..||.+|+|||..||+++|...
T Consensus        16 ~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          16 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   61 (68)
T ss_dssp             TTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4568999999999999999999999999999999999999999753

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=4.4e-10  Score=86.66  Aligned_cols=51  Identities=14%  Similarity=0.234  Sum_probs=45.3

Q ss_pred             cCCCCccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhccc
Q 013300            9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL   61 (446)
Q Consensus         9 k~klkKG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L   61 (446)
                      +++....+||+|||++|+++|.+|| .+|..||..|+ +|+..||+.||....
T Consensus        12 ~~~~~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~-~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          12 KDRQVMNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYYLTK   62 (68)
T ss_dssp             TSTTTTTCCCTTTHHHHHHHHHHTT-SCSSSHHHHTT-TSCHHHHHHHHHHHT
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHC-CcHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            4555678899999999999999999 57999999999 999999999997543

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=5.6e-10  Score=85.25  Aligned_cols=47  Identities=23%  Similarity=0.468  Sum_probs=43.2

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccchhhhcccC
Q 013300           14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLR   62 (446)
Q Consensus        14 KG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~~gRt~kQCR~RW~n~L~   62 (446)
                      ..+||+|||++|++++.+|| .+|..||..|+ +|+..||+.||.++..
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~-~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhC-chHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            46799999999999999999 67999999999 9999999999988653

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=1.2e-08  Score=84.17  Aligned_cols=53  Identities=19%  Similarity=0.288  Sum_probs=46.4

Q ss_pred             cccCCCCccCCCHHHHHHHHHHHHHhCCCC--ccccccccCcccCccccchhhhcc
Q 013300            7 CYKQKLRKGLWSPEEDEKLLRHITKYGHGC--WSSVPKQAGLQRCGKSCRLRWINY   60 (446)
Q Consensus         7 ~~k~klkKG~WT~EEDe~LlelV~kyG~~n--W~kIAk~m~~gRt~kQCR~RW~n~   60 (446)
                      ..+.+.+...||.|||+.|++.++++|...  |..||+.|+ +|++.|||+||...
T Consensus        26 ~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~-~Rs~~qvr~Rf~~L   80 (95)
T d1ug2a_          26 VSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL   80 (95)
T ss_dssp             CCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred             cCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            345667788999999999999999999543  999999999 99999999999653

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=3.3e-06  Score=63.70  Aligned_cols=44  Identities=16%  Similarity=0.341  Sum_probs=40.0

Q ss_pred             CccCHHHHHHHHHHHHHhC----CChHHHhhhCCCCCHHHHHHHHHHHh
Q 013300           68 GTFSQQEENLIIELHAVLG----NRWSQIAAQLPGRTDNEIKNLWNSCL  112 (446)
Q Consensus        68 g~WT~EED~kLlelv~~yG----nkWskIAk~LpgRT~~qcKnRW~~iL  112 (446)
                      +.||.||+.+|..++.+|.    .+|.+||..+ |||..+|..||+.+.
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            5799999999999999997    4699999999 999999999997544

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.94  E-value=7.2e-06  Score=60.97  Aligned_cols=43  Identities=21%  Similarity=0.288  Sum_probs=39.9

Q ss_pred             CccCHHHHHHHHHHHHHhCCChHHHhhh-CCCCCHHHHHHHHHH
Q 013300           68 GTFSQQEENLIIELHAVLGNRWSQIAAQ-LPGRTDNEIKNLWNS  110 (446)
Q Consensus        68 g~WT~EED~kLlelv~~yGnkWskIAk~-LpgRT~~qcKnRW~~  110 (446)
                      ..||+||..++++++..||.+|..|++. +++||..+|.+.|..
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4799999999999999999999999985 699999999999974

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.43  E-value=2.5e-05  Score=57.99  Aligned_cols=42  Identities=17%  Similarity=0.200  Sum_probs=38.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccc-cCcccCccccchhhhc
Q 013300           16 LWSPEEDEKLLRHITKYGHGCWSSVPKQ-AGLQRCGKSCRLRWIN   59 (446)
Q Consensus        16 ~WT~EEDe~LlelV~kyG~~nW~kIAk~-m~~gRt~kQCR~RW~n   59 (446)
                      .||+||-+++.+++.+|| .+|..|++. ++ +|+..||...|..
T Consensus         3 ~WT~eE~~~F~~~~~~yG-Kdf~~I~~~~v~-~Ks~~~~v~fYY~   45 (57)
T d2crga1           3 EWSASEACLFEEALEKYG-KDFNDIRQDFLP-WKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTC-SCHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHc-ccHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            699999999999999999 689999985 57 9999999998764

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=3.3e-05  Score=58.13  Aligned_cols=44  Identities=20%  Similarity=0.441  Sum_probs=38.9

Q ss_pred             cCCCHHHHHHHHHHHHHhCC---CCccccccccCcccCccccchhhhcc
Q 013300           15 GLWSPEEDEKLLRHITKYGH---GCWSSVPKQAGLQRCGKSCRLRWINY   60 (446)
Q Consensus        15 G~WT~EEDe~LlelV~kyG~---~nW~kIAk~m~~gRt~kQCR~RW~n~   60 (446)
                      +.||+||+.+|.+++.+|..   ..|..||..++  |+..+|..||...
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg--kt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence            47999999999999999964   35999999995  9999999999754

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.78  E-value=0.002  Score=45.82  Aligned_cols=46  Identities=22%  Similarity=0.489  Sum_probs=40.4

Q ss_pred             cCccCHHHHHHHHHHHHHhCCChHHHhhhC---CCCCHHHHHHHHHHHh
Q 013300           67 RGTFSQQEENLIIELHAVLGNRWSQIAAQL---PGRTDNEIKNLWNSCL  112 (446)
Q Consensus        67 rg~WT~EED~kLlelv~~yGnkWskIAk~L---pgRT~~qcKnRW~~iL  112 (446)
                      |..||+||-.-|...|+.+|+.|..|-=.+   +||+..++..+|+.++
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l~   49 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLI   49 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhhC
Confidence            357999999999999999999999996554   8999999999998653

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00086  Score=50.16  Aligned_cols=47  Identities=15%  Similarity=0.302  Sum_probs=40.1

Q ss_pred             cCccCHHHHHHHHHHHHHhCC-------C--hHHHhh-hCCCCCHHHHHHHHHHHhH
Q 013300           67 RGTFSQQEENLIIELHAVLGN-------R--WSQIAA-QLPGRTDNEIKNLWNSCLK  113 (446)
Q Consensus        67 rg~WT~EED~kLlelv~~yGn-------k--WskIAk-~LpgRT~~qcKnRW~~iLk  113 (446)
                      |.+||.|||..|++.|+++..       +  |.++++ .++.+|-...|+||...||
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            568999999999999999842       1  999996 5799999999999987654

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.63  E-value=0.0024  Score=48.38  Aligned_cols=46  Identities=13%  Similarity=0.137  Sum_probs=39.0

Q ss_pred             ccCccCHHHHHHHHHHHHHhCCCh---HHHhhhC--CCCCHHHHHHHHHHH
Q 013300           66 KRGTFSQQEENLIIELHAVLGNRW---SQIAAQL--PGRTDNEIKNLWNSC  111 (446)
Q Consensus        66 krg~WT~EED~kLlelv~~yGnkW---skIAk~L--pgRT~~qcKnRW~~i  111 (446)
                      .+-.||+||.+++++++..||..|   ..|.+.|  +++|..+|+.|...+
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            355799999999999999999877   5777774  889999999987654

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0012  Score=49.25  Aligned_cols=48  Identities=19%  Similarity=0.353  Sum_probs=40.0

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCC--------Ccccccc-ccCcccCccccchhhhcccC
Q 013300           14 KGLWSPEEDEKLLRHITKYGHG--------CWSSVPK-QAGLQRCGKSCRLRWINYLR   62 (446)
Q Consensus        14 KG~WT~EEDe~LlelV~kyG~~--------nW~kIAk-~m~~gRt~kQCR~RW~n~L~   62 (446)
                      |.+||.|||+.|++.|.++...        =|.++++ .++ .++-.+-|+||.++|.
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~-~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhc
Confidence            5689999999999999998432        2999985 456 8999999999998874

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.74  E-value=0.0025  Score=48.27  Aligned_cols=49  Identities=12%  Similarity=0.200  Sum_probs=37.5

Q ss_pred             CCccCCCHHHHHHHHHHHHHhCCCCc--cccccccCc-ccCccccchhhhcc
Q 013300           12 LRKGLWSPEEDEKLLRHITKYGHGCW--SSVPKQAGL-QRCGKSCRLRWINY   60 (446)
Q Consensus        12 lkKG~WT~EEDe~LlelV~kyG~~nW--~kIAk~m~~-gRt~kQCR~RW~n~   60 (446)
                      ..+-.||+||.++++++|..+|...|  ..|...|+. ++|..||+-+.+.|
T Consensus         5 k~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            34668999999999999999996544  466665532 78899998776655

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.60  E-value=0.095  Score=40.07  Aligned_cols=46  Identities=20%  Similarity=0.301  Sum_probs=40.9

Q ss_pred             ccCccCHHHHHHHHHHHHHhCCC----hHHHhhhCCCCCHHHHHHHHHHH
Q 013300           66 KRGTFSQQEENLIIELHAVLGNR----WSQIAAQLPGRTDNEIKNLWNSC  111 (446)
Q Consensus        66 krg~WT~EED~kLlelv~~yGnk----WskIAk~LpgRT~~qcKnRW~~i  111 (446)
                      ..+.|+++|=.+|-.++..+..+    |..||..++.|++..|-.+|..-
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~   56 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN   56 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhC
Confidence            34689999999999999998844    99999999999999999999753

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.39  E-value=0.019  Score=44.12  Aligned_cols=50  Identities=24%  Similarity=0.477  Sum_probs=43.0

Q ss_pred             CccCCCHHHHHHHHHHHHHhC---CCCccccccccCcccCccccchhhhcccCC
Q 013300           13 RKGLWSPEEDEKLLRHITKYG---HGCWSSVPKQAGLQRCGKSCRLRWINYLRP   63 (446)
Q Consensus        13 kKG~WT~EEDe~LlelV~kyG---~~nW~kIAk~m~~gRt~kQCR~RW~n~L~P   63 (446)
                      .-+.|.++|=++|-.++.-..   .+-|..||..++ .|++..|...|...+..
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VG-tRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHc-cCCHHHHHHHHHhCccc
Confidence            456899999999999998664   456999999999 99999999999877654

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.39  E-value=0.048  Score=38.50  Aligned_cols=45  Identities=16%  Similarity=0.222  Sum_probs=37.2

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCccccccccC--cccCccccchhhhc
Q 013300           14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAG--LQRCGKSCRLRWIN   59 (446)
Q Consensus        14 KG~WT~EEDe~LlelV~kyG~~nW~kIAk~m~--~gRt~kQCR~RW~n   59 (446)
                      |.-||+||-.-|...|+++| ..|..|--.+|  +||+......+|++
T Consensus         1 Rknft~eEv~YL~~GVK~~G-~~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMG-NHWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHC-SCHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhc-chhhhhhhccCCCCCchhhHHHHHHHh
Confidence            34699999999999999999 66999977554  38888888887764

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.99  E-value=0.88  Score=38.07  Aligned_cols=55  Identities=18%  Similarity=0.369  Sum_probs=44.0

Q ss_pred             CCccCccCHHHHHHHHHHHHHhC-CC---hHHHhhh------------CCCCCHHHHHHHHHHHhHHHHHh
Q 013300           64 DLKRGTFSQQEENLIIELHAVLG-NR---WSQIAAQ------------LPGRTDNEIKNLWNSCLKKKLRQ  118 (446)
Q Consensus        64 ~lkrg~WT~EED~kLlelv~~yG-nk---WskIAk~------------LpgRT~~qcKnRW~~iLkkklr~  118 (446)
                      ..++..+|+|||.-|+-++.+|| ++   |.+|-..            |..||+..|..|...+++-..+.
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~kE  116 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIERE  116 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHHHHH
Confidence            34555799999999999999999 56   8887433            34799999999999888766543

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.42  E-value=1.4  Score=31.57  Aligned_cols=41  Identities=20%  Similarity=0.358  Sum_probs=36.7

Q ss_pred             ccCHHHHHHHHHHHHHhC-CChHHHhhhCCCCCHHHHHHHHH
Q 013300           69 TFSQQEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWN  109 (446)
Q Consensus        69 ~WT~EED~kLlelv~~yG-nkWskIAk~LpgRT~~qcKnRW~  109 (446)
                      .|+.-|=..++.+..+|| .+-..||..|.|+|...|+...+
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~   42 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNA   42 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHH
Confidence            389999999999999999 68999999999999999887544