Citrus Sinensis ID: 013308

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-----

MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLLHFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVKFLIINSCIF

cHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHcccccccccccccccccccEEEEEEEccccccccEEEcHHHHHHHHHHHcccccccEEEEEccccccccccccccEEEEcccccccccccccccccccccHHHHHHHHHccccccccccccccccccccEEEEEEccccccccccccccccccHHHHHHHHHHHHHcccccEEEEEEEccccccccccccccccEEEEEEccccccccccccccccccccccccccccccHHHHHHcccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHcccc

cHHHHHHHHHHHHHHHHHHHcccccccccEEEcccccHHHcccccccccccccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHccccHccEEEEEEcHcccccccccccEEEEcccccccccccccccccccccHHHHHHHHccccccccccccEEEEcccccEEEEEEEccccccEEEccccHHHcHHHHHHHHHHHHHcccccEEEEEEEEcccccHHccccccccEEEEEEccccccccccEEccccccccccccccccccEEEHHHHHccccccccHHHHHHHHHHHHHHHccccccccEEEEEccccccHcHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccccccHHHHHHHHHHHHcccccc

MTRLASGVLITLLVALAGiadgsrdiagdilklpsEAYRffhnggggakvnddddsvgTRWAVLLAGSngfwnyrhQADICHAYQLLrkgglkdenIIVFMyddiafneenprpgviinhphgddvykgvpkdytgedvtvENFFAVILGNktaltggsgkvvdsgpndhififysdhggpgvlgmptsryIYADELIDVLKKKHASGNYKSLVFYLEACesgsifegllpeglniyattasnaeesswgtycpgeipgpppeystclgdlysiawmedsdihnlrTETLHQQYELVKTRTAsynsygshvmqygdiglsknnlftylgtnpandnytfvdenslrpaskavnqrDADLLHFWDKyrkapegtprKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFgiekgpeilntvrpagqplvddwGCLKSLVKFLIINSCIF

MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLLHFWDKYrkapegtpRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVKFLIINSCIF

*****SGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDE************RDADLLHFWDKY****************FFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVKFLIINSCI*

***LASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFF**************SVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKT***********SGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAE*******CPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNP**********************RDADLLHFWD*****************QFFEAMSHRMHVDHSIKLIGKLLFGIEK**********AGQPLVDDWGCLKSLVKFLIINSCIF

MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLLHFWDKYRKA**********QKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVKFLIINSCIF

MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFF**************SVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNP*********ENSLRPASKAVNQRDADLLHFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVKFLIINSCIF

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		445	2.2.26 [Sep-21-2011]
P49043		494	Vacuolar-processing enzym	no	no	0.979	0.882	0.990	0.0
O24325		484	Vacuolar-processing enzym	N/A	no	0.898	0.826	0.760	0.0
Q39119		494	Vacuolar-processing enzym	yes	no	0.905	0.815	0.779	0.0
P49044		493	Vacuolar-processing enzym	N/A	no	0.961	0.868	0.715	0.0
P49047		478	Vacuolar-processing enzym	no	no	0.941	0.876	0.718	1e-180
P49042		497	Vacuolar-processing enzym	N/A	no	0.874	0.782	0.631	1e-150
P49045		495	Vacuolar-processing enzym	no	no	0.889	0.8	0.598	1e-146
P49046		475	Legumain OS=Canavalia ens	N/A	no	0.932	0.873	0.576	1e-145
Q39044		486	Vacuolar-processing enzym	no	no	0.867	0.794	0.603	1e-142
O24326		493	Vacuolar-processing enzym	N/A	no	0.925	0.835	0.572	1e-141

>sp\|P49043\|VPE_CITSI Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1	Back alignment and function desciption

 Score =  899 bits (2323), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/436 (99%), Positives = 434/436 (99%)

Query: 1   MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTR 60
           MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTR
Sbjct: 1   MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTR 60

Query: 61  WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINH 120
           WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINH
Sbjct: 61  WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINH 120

Query: 121 PHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG 180
           PHGDDVYKGVPKDYTGEDVTVE FFAV+LGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG
Sbjct: 121 PHGDDVYKGVPKDYTGEDVTVEKFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG 180

Query: 181 PGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATT 240
           PGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLL EGLNIYATT
Sbjct: 181 PGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLLEGLNIYATT 240

Query: 241 ASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTR 300
           ASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTR
Sbjct: 241 ASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTR 300

Query: 301 TASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLL 360
           TASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLL
Sbjct: 301 TASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLL 360

Query: 361 HFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPA 420
           HFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPA
Sbjct: 361 HFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPA 420

Query: 421 GQPLVDDWGCLKSLVK 436
           GQPLVDDWGCLKSLV+
Sbjct: 421 GQPLVDDWGCLKSLVR 436

Asparagine-specific endopeptidase that may be involved in processing of proteins targeted to vacuoles that accumulate during ethylene-regulated processes such as flower opening and flavedo degreening.
Citrus sinensis (taxid: 2711)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -

>sp\|O24325\|VPE1_PHAVU Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=1 SV=1	Back alignment and function description

>sp\|Q39119\|VPEG_ARATH Vacuolar-processing enzyme gamma-isozyme OS=Arabidopsis thaliana GN=At4g32940 PE=2 SV=2	Back alignment and function description

>sp\|P49044\|VPE_VICSA Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV=1	Back alignment and function description

>sp\|P49047\|VPEA_ARATH Vacuolar-processing enzyme alpha-isozyme OS=Arabidopsis thaliana GN=At2g25940 PE=2 SV=2	Back alignment and function description

>sp\|P49042\|VPE_RICCO Vacuolar-processing enzyme OS=Ricinus communis PE=1 SV=1	Back alignment and function description

>sp\|P49045\|VPE_SOYBN Vacuolar-processing enzyme OS=Glycine max PE=2 SV=1	Back alignment and function description

>sp\|P49046\|LEGU_CANEN Legumain OS=Canavalia ensiformis PE=1 SV=1	Back alignment and function description

>sp\|Q39044\|VPEB_ARATH Vacuolar-processing enzyme beta-isozyme OS=Arabidopsis thaliana GN=At1g62710 PE=2 SV=3	Back alignment and function description

>sp\|O24326\|VPE2_PHAVU Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		445
1351408		494	RecName: Full=Vacuolar-processing enzyme	0.979	0.882	0.990	0.0
237861979		494	vacuolar processing enzyme [Malus hupehe	0.977	0.880	0.803	0.0
255550848		492	Vacuolar-processing enzyme precursor, pu	0.966	0.873	0.802	0.0
233142300		493	vacuolar processing enzyme a [Populus to	0.975	0.880	0.823	0.0
224141591		489	predicted protein [Populus trichocarpa]	0.966	0.879	0.819	0.0
224088921		493	predicted protein [Populus trichocarpa]	0.975	0.880	0.826	0.0
225429442		493	PREDICTED: vacuolar-processing enzyme [V	0.950	0.858	0.798	0.0
147799465		493	hypothetical protein VITISV_040193 [Viti	0.923	0.833	0.816	0.0
356514571		484	PREDICTED: vacuolar-processing enzyme-li	0.943	0.867	0.794	0.0
449494401		493	PREDICTED: vacuolar-processing enzyme-li	0.973	0.878	0.764	0.0

>gi\|1351408\|sp\|P49043.1\|VPE_CITSI RecName: Full=Vacuolar-processing enzyme; Short=VPE; Flags: Precursor gi\|633185\|emb\|CAA87720.1\| cystein proteinase (by similarity) [Citrus sinensis] gi\|1588548\|prf\|\|2208463A vascular processing protease	Back alignment and taxonomy information

 Score =  899 bits (2323), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/436 (99%), Positives = 434/436 (99%)

Query: 1   MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTR 60
           MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTR
Sbjct: 1   MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTR 60

Query: 61  WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINH 120
           WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINH
Sbjct: 61  WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINH 120

Query: 121 PHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG 180
           PHGDDVYKGVPKDYTGEDVTVE FFAV+LGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG
Sbjct: 121 PHGDDVYKGVPKDYTGEDVTVEKFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG 180

Query: 181 PGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATT 240
           PGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLL EGLNIYATT
Sbjct: 181 PGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLLEGLNIYATT 240

Query: 241 ASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTR 300
           ASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTR
Sbjct: 241 ASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTR 300

Query: 301 TASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLL 360
           TASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLL
Sbjct: 301 TASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLL 360

Query: 361 HFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPA 420
           HFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPA
Sbjct: 361 HFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPA 420

Query: 421 GQPLVDDWGCLKSLVK 436
           GQPLVDDWGCLKSLV+
Sbjct: 421 GQPLVDDWGCLKSLVR 436

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|237861979\|gb\|ACR24644.1\| vacuolar processing enzyme [Malus hupehensis var. mengshanensis]	Back alignment and taxonomy information

>gi\|255550848\|ref\|XP_002516472.1\| Vacuolar-processing enzyme precursor, putative [Ricinus communis] gi\|223544292\|gb\|EEF45813.1\| Vacuolar-processing enzyme precursor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|233142300\|gb\|ACQ91103.1\| vacuolar processing enzyme a [Populus tomentosa]	Back alignment and taxonomy information

>gi\|224141591\|ref\|XP_002324151.1\| predicted protein [Populus trichocarpa] gi\|222865585\|gb\|EEF02716.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224088921\|ref\|XP_002308580.1\| predicted protein [Populus trichocarpa] gi\|222854556\|gb\|EEE92103.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225429442\|ref\|XP_002276759.1\| PREDICTED: vacuolar-processing enzyme [Vitis vinifera] gi\|296081609\|emb\|CBI20614.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147799465\|emb\|CAN70603.1\| hypothetical protein VITISV_040193 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356514571\|ref\|XP_003525979.1\| PREDICTED: vacuolar-processing enzyme-like [Glycine max]	Back alignment and taxonomy information

>gi\|449494401\|ref\|XP_004159537.1\| PREDICTED: vacuolar-processing enzyme-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		445
TAIR\|locus:2123782		494	GAMMA-VPE "gamma vacuolar proc	0.966	0.870	0.753	2e-184
TAIR\|locus:2043510		478	ALPHA-VPE "alpha-vacuolar proc	0.903	0.841	0.75	3e-172
TAIR\|locus:2026242		486	BETA-VPE "beta vacuolar proces	0.860	0.788	0.608	2.1e-132
TAIR\|locus:2087625		466	DELTA-VPE "delta vacuolar proc	0.862	0.824	0.563	8.8e-118
RGD\|619832		435	Lgmn "legumain" [Rattus norveg	0.611	0.625	0.513	1.7e-75
UNIPROTKB\|Q9R0J8		435	Lgmn "Legumain" [Rattus norveg	0.611	0.625	0.513	1.7e-75
ZFIN\|ZDB-GENE-021030-1		438	lgmn "legumain" [Danio rerio (	0.593	0.602	0.503	1.5e-74
UNIPROTKB\|Q86TV2		372	LGMN "Legumain" [Homo sapiens	0.608	0.728	0.503	2.5e-74
UNIPROTKB\|Q86TV3		376	LGMN "Full-length cDNA clone C	0.608	0.720	0.503	2.5e-74
UNIPROTKB\|Q99538		433	LGMN "Legumain" [Homo sapiens	0.608	0.625	0.503	2.5e-74

TAIR\|locus:2123782 GAMMA-VPE "gamma vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1789 (634.8 bits), Expect = 2.0e-184, P = 2.0e-184
 Identities = 330/438 (75%), Positives = 376/438 (85%)

Query:     1 MTRLASGV-LITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGT 59
             MTR++ GV L  LLV+L  ++  +R    D++KLPS+A RFF         NDDD + GT
Sbjct:     5 MTRVSVGVVLFVLLVSLVAVS-AARSGPDDVIKLPSQASRFFRPAE-----NDDDSNSGT 58

Query:    60 RWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIIN 119
             RWAVL+AGS+G+WNYRHQADICHAYQLLRKGGLK+ENI+VFMYDDIA N ENPRPG IIN
Sbjct:    59 RWAVLVAGSSGYWNYRHQADICHAYQLLRKGGLKEENIVVFMYDDIANNYENPRPGTIIN 118

Query:   120 HPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHG 179
              PHG DVY+GVPKDYTG+DV V+N FAVILG+KTA+ GGSGKVVDSGPNDHIFIFYSDHG
Sbjct:   119 SPHGKDVYQGVPKDYTGDDVNVDNLFAVILGDKTAVKGGSGKVVDSGPNDHIFIFYSDHG 178

Query:   180 GPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYAT 239
             GPGVLGMPTS Y+YA++L DVLKKKHA G YKSLVFYLEACESGSIFEGLLPEGLNIYAT
Sbjct:   179 GPGVLGMPTSPYLYANDLNDVLKKKHALGTYKSLVFYLEACESGSIFEGLLPEGLNIYAT 238

Query:   240 TASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKT 299
             TASNAEESSWGTYCPGE P PPPEY TCLGDLYS+AWMEDS +HNL+TETLHQQYELVK 
Sbjct:   239 TASNAEESSWGTYCPGEEPSPPPEYETCLGDLYSVAWMEDSGMHNLQTETLHQQYELVKR 298

Query:   300 RTASYN-SYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDAD 358
             RTA    SYGSHVMQYGD+G+SK+NL  Y+GTNPANDN+TF D NSL+P S+  NQRDAD
Sbjct:   299 RTAPVGYSYGSHVMQYGDVGISKDNLDLYMGTNPANDNFTFADANSLKPPSRVTNQRDAD 358

Query:   359 LLHFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVR 418
             L+HFW+KYRKAPEG+ RK EAQKQ  EAMSHR+H+D+S+ L+GK+LFGI +GPE+LN VR
Sbjct:   359 LVHFWEKYRKAPEGSARKTEAQKQVLEAMSHRLHIDNSVILVGKILFGISRGPEVLNKVR 418

Query:   419 PAGQPLVDDWGCLKSLVK 436
              AGQPLVDDW CLK+ V+
Sbjct:   419 SAGQPLVDDWNCLKNQVR 436

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA;ISS;IDA

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0000323 "lytic vacuole" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0006624 "vacuolar protein processing" evidence=ISS

TAIR\|locus:2043510 ALPHA-VPE "alpha-vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2026242 BETA-VPE "beta vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2087625 DELTA-VPE "delta vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

RGD\|619832 Lgmn "legumain" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9R0J8 Lgmn "Legumain" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-021030-1 lgmn "legumain" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q86TV2 LGMN "Legumain" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q86TV3 LGMN "Full-length cDNA clone CS0DB001YK19 of Neuroblastoma of Homo sapiens (human)" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q99538 LGMN "Legumain" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P49044	VPE_VICSA	3, ., 4, ., 2, 2, ., -	0.7152	0.9617	0.8681	N/A	no
P49047	VPEA_ARATH	3, ., 4, ., 2, 2, ., -	0.7185	0.9415	0.8765	no	no
P49046	LEGU_CANEN	3, ., 4, ., 2, 2, ., 3, 4	0.5760	0.9325	0.8736	N/A	no
Q9R0J8	LGMN_RAT	3, ., 4, ., 2, 2, ., 3, 4	0.5104	0.6112	0.6252	yes	no
P49043	VPE_CITSI	3, ., 4, ., 2, 2, ., -	0.9908	0.9797	0.8825	no	no
O89017	LGMN_MOUSE	3, ., 4, ., 2, 2, ., 3, 4	0.5104	0.6112	0.6252	yes	no
Q39119	VPEG_ARATH	3, ., 4, ., 2, 2, ., -	0.7799	0.9056	0.8157	yes	no
O24325	VPE1_PHAVU	3, ., 4, ., 2, 2, ., -	0.7608	0.8988	0.8264	N/A	no
O24326	VPE2_PHAVU	3, ., 4, ., 2, 2, ., -	0.5720	0.9258	0.8356	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.22	0.963
3rd Layer	3.4.22.34	0.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_XVIII0730	hypothetical protein (489 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		445
pfam01650		258	pfam01650, Peptidase_C13, Peptidase C13 family	1e-160
COG5206		382	COG5206, GPI8, Glycosylphosphatidylinositol transa	3e-25

>gnl\|CDD\|216627 pfam01650, Peptidase_C13, Peptidase C13 family	Back alignment and domain information

 Score =  452 bits (1164), Expect = e-160
 Identities = 177/271 (65%), Positives = 210/271 (77%), Gaps = 13/271 (4%)

Query: 60  RWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIIN 119
            WAVL+AGSNG++NYRHQAD+CHAYQLL+K G+KDENIIV MYDDIA N ENP PG I N
Sbjct: 1   LWAVLVAGSNGYYNYRHQADVCHAYQLLKKFGIKDENIIVMMYDDIANNPENPFPGKIFN 60

Query: 120 HPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHG 179
            P+G DVYKGVP DYTG DVT  NF AV+LG+K+AL  GSGKV+ SGPND++FI+++DHG
Sbjct: 61  KPNGTDVYKGVPIDYTGNDVTPRNFLAVLLGDKSALK-GSGKVLKSGPNDNVFIYFTDHG 119

Query: 180 GPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYAT 239
            PGVLG P   Y+YA +L + LKK HA G YK LVFY+EACESGS+FEG LP+ +NIYAT
Sbjct: 120 APGVLGFPELDYLYAKDLAEALKKMHARGKYKKLVFYVEACESGSMFEG-LPKDINIYAT 178

Query: 240 TASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKT 299
           TA+NA+ESSWGTYC      P PE  TCLGDL+S+ WMEDSD H+L  ETL QQ+ELVK 
Sbjct: 179 TAANADESSWGTYC------PDPEDGTCLGDLFSVNWMEDSDDHDLSKETLEQQFELVKN 232

Query: 300 RTASYNSYGSHVMQYGDIGLSKNNLFTYLGT 330
           RT      GSHVMQYGD  + +  +  + GT
Sbjct: 233 RTT-----GSHVMQYGDKSIPQLPVSLFQGT 258

Members of this family are asparaginyl peptidases. The blood fluke parasite Schistosoma mansoni has at least five Clan CA cysteine peptidases in its digestive tract including cathepsins B (2 isoforms), C, F and L. All have been recombinantly expressed as active enzymes, albeit in various stages of activation. In addition, a Clan CD peptidase, termed asparaginyl endopeptidase or 'legumain' has been identified. This has formerly been characterized as a 'haemoglobinase', but this term is probably incorrect. Two cDNAs have been described for Schistosoma mansoni legumain; one encodes an active enzyme whereas the active site cysteine residue encoded by the second cDNA is substituted by an asparagine residue. Both forms have been recombinantly expressed. Length = 258

>gnl\|CDD\|227531 COG5206, GPI8, Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		445
KOG1348		477	consensus Asparaginyl peptidases [Posttranslationa	100.0
PF01650		256	Peptidase_C13: Peptidase C13 family; InterPro: IPR	100.0
KOG1349		309	consensus Gpi-anchor transamidase [Posttranslation	100.0
COG5206		382	GPI8 Glycosylphosphatidylinositol transamidase (GP	100.0
PF00656		248	Peptidase_C14: Caspase domain; InterPro: IPR011600	99.13
KOG1546		362	consensus Metacaspase involved in regulation of ap	98.37
smart00115		241	CASc Caspase, interleukin-1 beta converting enzyme	96.89
cd00032		243	CASc Caspase, interleukin-1 beta converting enzyme	96.58
PF14538		154	Raptor_N: Raptor N-terminal CASPase like domain	86.6
PF12770		287	CHAT: CHAT domain	85.41

>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=8.5e-150  Score=1118.22  Aligned_cols=403  Identities=66%  Similarity=1.129  Sum_probs=385.1

Q ss_pred             cCccccccccCCCCCCCcCCCCCCCCCeeEEEEeccCCCCCchhhhHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCC
Q 013308           33 LPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENP  112 (445)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wAVlVagS~gw~NYRHqaDv~~~YqiL~~~Gi~denIIvmmyDDiA~n~~Np  112 (445)
                      +|.-.++|++|       .+.++.+|++||||||||+||||||||||||||||+||++|+|+||||||||||||+||+||
T Consensus        26 ~~~la~~~~~p-------~d~~ddggt~waVLVAGSngyyNYRHQADvcHAYqiLrkgGikeEnIvv~MYDDIA~~~~NP   98 (477)
T KOG1348|consen   26 LPLLASGFARP-------ADDDDDGGTRWAVLVAGSNGYYNYRHQADVCHAYQILRKGGIKEENIVVMMYDDIANNEENP   98 (477)
T ss_pred             CccccccccCc-------CcCCccCceeEEEEEecCCcccchhhhhhHHHHHHHHHhcCCCchhEEEEEehhhhcCCCCC
Confidence            44444556665       23334448999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEeeCCCCCCccCCccccCCCCCCCHHHHHHHHcCCCCCCCCCCCCcccCCCCCeEEEEeecCCCCCCcCCCCCCCC
Q 013308          113 RPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYI  192 (445)
Q Consensus       113 ~pG~i~n~p~g~dvY~gv~iDY~g~~Vt~~nfl~vL~G~~~~~~~~s~kvl~S~~~D~VFIY~tdHGg~g~l~fpd~~~L  192 (445)
                      +||+|||+|+|+|||+||+|||||++||++||++||+||+++++|||||||+|+|||||||||+||||||+|+||+++.|
T Consensus        99 rpG~iiN~P~G~DvY~GvpkDYtg~~Vt~~Nf~aVllGd~savkGGsGKV~~SgpnDhiFiYytDHG~pGvl~mP~~~~l  178 (477)
T KOG1348|consen   99 RPGVIINRPNGKDVYQGVPKDYTGEDVTPQNFLAVLLGDASAVKGGSGKVLKSGPNDHIFIYYTDHGGPGVLGMPTSPDL  178 (477)
T ss_pred             CCceeecCCCchhhhcCCCCcccCCcCCHHHHHHHHhcccccccCCCceeeccCCCceEEEEEecCCCCceEecCCCcch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCceEEEEeecccccccccccCCCCCcEEEEeecCCCCccccccCCCCCCCCCCCccccchhhh
Q 013308          193 YADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLY  272 (445)
Q Consensus       193 ~a~dL~~~L~~M~~~~~Ykkmvf~iEAC~SGSmf~~llp~~~nV~a~TASn~~ESSya~yc~~~~~~~~~~~~tcLgD~f  272 (445)
                      +++||+++|++||+.++|++||||+|||||||||+++||+++||||+||||+.||||+||||+++|+||+++.|||||+|
T Consensus       179 ~akdlnevL~kmhk~k~Y~~mvfYlEACESGSmfegiLp~~lnIYatTAaNa~ESSwgtycp~~~psppse~~tcLGDly  258 (477)
T KOG1348|consen  179 YAKDLNEVLKKMHKSKTYKKMVFYLEACESGSMFEGILPKNLNIYATTAANARESSWGTYCPGEYPSPPSEYSTCLGDLY  258 (477)
T ss_pred             hHHHHHHHHHHHHhccchheEEEEeeeccCcchhhhhccCCCcEEEeecCCccccccceeCCCCCCCChhhcccccccce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcccccccccccccHHHHHHHHHhhccCCCCCCCCceeecCCcccccchhhccccCCCCCCccccCCCCCCCCCCcc
Q 013308          273 SIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAV  352 (445)
Q Consensus       273 S~~wme~~~~~~l~~eTl~~qf~~Vk~~t~~~~~~~Shv~~yGd~~~~~~~l~~f~g~~~~~~~~~~~~~~~~~~~~~~v  352 (445)
                      ||+||||||.|||++|||+|||+.||+||+....+|||||||||..|++++|..|||.+|+++|++|. +.+..+++..+
T Consensus       259 SV~WmeDSd~hdL~kETL~qQYhlVK~rt~~s~s~gsHVmqyGd~~iske~l~lfqG~~pa~~nf~l~-~~s~~~~s~~~  337 (477)
T KOG1348|consen  259 SVNWMEDSDVHDLKKETLHQQYHLVKKRTNTSYSYGSHVMQYGDKTISKEKLMLFQGMKPANENFTLP-ASSHKSPSGLT  337 (477)
T ss_pred             eeeeeccCccccchHHHHHHHHHHHHHhcCCCCCCcceeeecCcchhhHHHHHHHcCCCcccCCCCCC-ccCcCCccccC
Confidence            99999999999999999999999999999998779999999999999999999999999999999887 55566678899


Q ss_pred             CCcchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccCCCCCCCccCcchHH
Q 013308          353 NQRDADLLHFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCLK  432 (445)
Q Consensus       353 ~~rd~~l~~l~~k~~~~~~~~~~~~~a~~~l~~~~~~R~~id~~~~~I~~~l~~~~~~~~~l~~~~~~g~~l~~~~~C~k  432 (445)
                      ||||+||++||+||+++++++.++.++++||.+++.||+|||++|..|+.++||. .+..+|+.+|++|+||+|||+|+|
T Consensus       338 n~rD~~L~~l~~k~rka~dgs~~s~e~~k~i~~~~~hR~~id~sV~~I~~llf~~-~~~~~l~~vr~~g~Plvddw~C~k  416 (477)
T KOG1348|consen  338 NQRDAPLLHLWRKYRKANDGSAESRELQKEILRHKDHRKHIDKSVRLIVSLLFGS-EGEAVLNQVRSEGQPLVDDWDCLK  416 (477)
T ss_pred             CCCCccHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chHHHHHHhhcCCCCccchHHHHH
Confidence            9999999999999999999999999999999999999999999999999999988 455789999999999999999999


Q ss_pred             HHHHHHHhhcCC
Q 013308          433 SLVKFLIINSCI  444 (445)
Q Consensus       433 ~~v~~f~~~CG~  444 (445)
                      ++|+.|++|||+
T Consensus       417 ~~v~~F~~hCg~  428 (477)
T KOG1348|consen  417 SAVRHFETHCGS  428 (477)
T ss_pred             HHHHHHHHhcch
Confidence            999999999996

>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues	Back alignment and domain information

>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis)	Back alignment and domain information

>PF14538 Raptor_N: Raptor N-terminal CASPase like domain	Back alignment and domain information

>PF12770 CHAT: CHAT domain	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		445
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 60/491 (12%), Positives = 106/491 (21%), Gaps = 186/491 (37%)

Query: 30  ILKLPSEAYRFFHNGGGGAK---VND--DDDSVGTRWAVLLAGSNGFW----NYRHQADI 80
           +L+L            G  K     D      V  +          FW    N      +
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK-----MDFKIFWLNLKNCNSPETV 198

Query: 81  CHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGV---IINHPHG------DDVYKGVP 131
               Q L      +         +I     + +  +   + + P+        +V     
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ---- 254

Query: 132 KDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPG--------- 182
                 +    N F   L  K  LT    +V D            DH             
Sbjct: 255 ------NAKAWNAFN--LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 183 ---VLGMPTS-------------------------------RYIYADEL-------IDVL 201
               L                                    +++  D+L       ++VL
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 202 KKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWG---TYCPGEI- 257
           +       +  L          S+F    P   +I            W          + 
Sbjct: 367 EPAEYRKMFDRL----------SVF----PPSAHIPTILL----SLIWFDVIKSDVMVVV 408

Query: 258 ---------PGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQ----QYELVKTRTAS- 303
                       P E +  +  +Y      +  +       LH+     Y + KT  +  
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYL-----ELKVKLENEYALHRSIVDHYNIPKTFDSDD 463

Query: 304 ----------YNSYGSHVMQYGDIGLSKNNLFT--YL-----------------GTNPAN 334
                     Y+  G H+         +  LF   +L                  +    
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPE--RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521

Query: 335 D------NY-TFVDENS--------------LRPASKAVNQRDADLLHFWDKYRKA--PE 371
           +       Y  ++ +N                +     +  +  DLL        A   E
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI------ALMAE 575

Query: 372 GTPRKAEAQKQ 382
                 EA KQ
Sbjct: 576 DEAIFEEAHKQ 586

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		445
3bij_A		285	Uncharacterized protein GSU0716; alpha-beta protei	99.54
4af8_A		367	Metacaspase MCA2; hydrolase, cysteine peptidase, c	99.3
4f6o_A		350	Metacaspase-1; rossmann fold, hydrolase; HET: DFH;	99.24
3uoa_B		390	Mucosa-associated lymphoid tissue lymphoma transl	98.8
2j32_A		250	Caspase-3; Pro-caspase3, thiol protease, hydrolase	95.84
4ehd_A		277	Caspase-3; caspase, apoptosis, allosteric inhibiti	95.7
3sir_A		259	Caspase; hydrolase; 2.68A {Drosophila melanogaster	95.62
1m72_A		272	Caspase-1; caspase, cysteine protease, hydrolase-h	95.49
3h11_B		271	Caspase-8; cell death, apoptosis, caspase, alterna	95.12
3od5_A		278	Caspase-6; caspase domain, apoptotic protease, hyd	95.04
1f1j_A		305	Caspase-7 protease; caspase-7, cysteine protease,	95.04
2nn3_C		310	Caspase-1; cysteine protease, hydrolase; 3.00A {Sp	94.68
3e4c_A		302	Caspase-1; zymogen, inflammasome, ICE, IL-1B, inna	94.38
2h54_A		178	Caspase-1; allosteric site, dimer interface, hydro	93.86
1nw9_B		277	Caspase 9, apoptosis-related cysteine protease; XI	93.68
2fp3_A		316	Caspase NC; apoptosis, initiator caspase activatio	93.24
1pyo_A		167	Caspase-2; apoptosis, caspase, alpha-beta, thiol p	84.56

>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}	Back alignment and structure

Probab=99.54  E-value=4.2e-14  Score=138.46  Aligned_cols=188  Identities=14%  Similarity=0.149  Sum_probs=135.9

Q ss_pred             CCeeEEEEeccCC----CC----Cch-hhhHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCCccC
Q 013308           58 GTRWAVLLAGSNG----FW----NYR-HQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYK  128 (445)
Q Consensus        58 ~~~wAVlVagS~g----w~----NYR-HqaDv~~~YqiL~~~Gi~denIIvmmyDDiA~n~~Np~pG~i~n~p~g~dvY~  128 (445)
                      +++||+||+-+++    |.    +-+ =..|+..+.++|++.||+   |++++-+                         
T Consensus         2 ~~~~ALlIGi~~Y~~~~Y~~~~~~L~~~~nDa~~~~~~L~~~Gf~---v~~l~~~-------------------------   53 (285)
T 3bij_A            2 PKGIALALGLNAVDPKHYGGWAGKLNACEADAEDMAAIAAERGFA---VTTLMTK-------------------------   53 (285)
T ss_dssp             CCEEEEEEECSCCCTTTTTTCCCCCSSHHHHHHHHHHHHHHTTCE---EEEEEGG-------------------------
T ss_pred             CceEEEEEEeCCccccccCCCcccCCCCHHHHHHHHHHHHHcCCc---eEEecCC-------------------------
Confidence            4789999999874    21    222 247899999999999997   6666522                         


Q ss_pred             CccccCCCCCCCHHHHHHHHcCCCCCCCCCCCCcccCCCCCeEEEEeecCCCC-------------CCcCCCCCCCCCHH
Q 013308          129 GVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGP-------------GVLGMPTSRYIYAD  195 (445)
Q Consensus       129 gv~iDY~g~~Vt~~nfl~vL~G~~~~~~~~s~kvl~S~~~D~VFIY~tdHGg~-------------g~l~fpd~~~L~a~  195 (445)
                               +.|.+++++.|..-          +-+..|+|.+||||+|||..             ++|...|+ .|..+
T Consensus        54 ---------~~t~~~i~~al~~l----------~~~~~~~D~~~~yfSGHG~~~~~~~g~e~dg~~~~l~p~D~-~i~~~  113 (285)
T 3bij_A           54 ---------AATRAKVIDAIGKA----------AKALGKGDIFMLSYSGHGGQVPDTSNDEPDGVDETWCLFDG-ELIDD  113 (285)
T ss_dssp             ---------GCCHHHHHHHHHHH----------HHHCCTTCEEEEEEESCEEEEECTTSCCTTCEEEEEECSSS-EEEHH
T ss_pred             ---------ccCHHHHHHHHHHH----------HHhCCCCCEEEEEEcCCcccccCCCCCccCCCcceEEecCC-CccHH
Confidence                     25888998887621          11346889999999999962             35555554 47788


Q ss_pred             HHHHHHHHHHHcCCCceEEEEeecccccccccc----------------------cCC----------------------
Q 013308          196 ELIDVLKKKHASGNYKSLVFYLEACESGSIFEG----------------------LLP----------------------  231 (445)
Q Consensus       196 dL~~~L~~M~~~~~Ykkmvf~iEAC~SGSmf~~----------------------llp----------------------  231 (445)
                      +|.+.|+.+.   .-+++++++|+|+||++.++                      .+|                      
T Consensus       114 ~l~~~l~~l~---~~~~~~vilD~C~SG~~~~~~p~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~  190 (285)
T 3bij_A          114 ELYALLGKFA---AGVRVLVFSDSCHSGTVVKMAYYNGTTAARSAGPDEGEIRYRAMPQSVAMRTYRANREFYDTIQQKT  190 (285)
T ss_dssp             HHHHHHTTSC---SSCEEEEEEECCCCCCHHHHHHTTC-------------CEESBCCHHHHHHHHHHTHHHHHHHHHHC
T ss_pred             HHHHHHHhcc---CCCeEEEEEecCCCCccccccccccccccccccccccccceeecCchhhhhhhhcchhHHHHHhhhc
Confidence            9998887762   35789999999999998762                      011                      


Q ss_pred             -------CCCcEEEEeecCCCCccccccCCCCCCCCCCCccccchhhhhhhhcccccccccccccHHHHHHHHHhhccCC
Q 013308          232 -------EGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASY  304 (445)
Q Consensus       232 -------~~~nV~a~TASn~~ESSya~yc~~~~~~~~~~~~tcLgD~fS~~wme~~~~~~l~~eTl~~qf~~Vk~~t~~~  304 (445)
                             ...++++++|+.++|.||-.-          .     ..+||.+.++-..... ...|+.++++.|++++.. 
T Consensus       191 ~~~~~~~~~~~~i~lsa~~~~q~A~e~~----------~-----~G~FT~aLl~~L~~~~-~~~s~~~l~~~v~~~~~~-  253 (285)
T 3bij_A          191 KKVDLADVKASILLISGCQDNQLSQDGA----------F-----NGAFTGQLLRVWKNGL-YKGSYRSFHKAIVRRMPP-  253 (285)
T ss_dssp             CCCCTTTCSSEEEEEESSCTTSCCEECS----------S-----SCHHHHHHHHHHGGGT-CCSCHHHHHHHHHHHSCT-
T ss_pred             ccccccCCCCCEEEEEeCCCCccccccc----------c-----CCHHHHHHHHHHhhCC-CCcCHHHHHHHHHHhcCC-
Confidence                   123689999999999998530          1     1578888876543222 246899999999998864 


Q ss_pred             CCCCCCceeecC
Q 013308          305 NSYGSHVMQYGD  316 (445)
Q Consensus       305 ~~~~Shv~~yGd  316 (445)
                         .+|++.||.
T Consensus       254 ---~Q~P~~~~~  262 (285)
T 3bij_A          254 ---DQTPNFFTA  262 (285)
T ss_dssp             ---TCCCEEEEE
T ss_pred             ---CCCcceeCC
Confidence               589999885

PyMOL of 3bij

>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A	Back alignment and structure

>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}	Back alignment and structure

>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*	Back alignment and structure

>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A	Back alignment and structure

>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A	Back alignment and structure

>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A	Back alignment and structure

>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B	Back alignment and structure

>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*	Back alignment and structure

>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*	Back alignment and structure

>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*	Back alignment and structure

>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}	Back alignment and structure

>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}	Back alignment and structure

>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...	Back alignment and structure

>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A	Back alignment and structure

>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}	Back alignment and structure

>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		445
g1qtn.1		242	Caspase-8 {Human (Homo sapiens) [TaxId: 9606]}	98.39
d1nw9b_		277	Caspase-9 {Human (Homo sapiens) [TaxId: 9606]}	98.0
g1sc3.1		261	Interleukin-1beta converting enzyme (a cysteine pr	97.62
g1pyo.1		257	Caspase-2 {Human (Homo sapiens) [TaxId: 9606]}	97.31
d1m72a_		256	Caspase-1 {Fall armyworm (Spodoptera frugiperda) [	97.18
g1nme.1		238	Apopain (caspase-3, cpp32) {Human (Homo sapiens) [	96.89
d1f1ja_		245	Caspase-7 {Human (Homo sapiens) [TaxId: 9606]}	96.48

>d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=2.2e-05  Score=72.49  Aligned_cols=182  Identities=16%  Similarity=0.215  Sum_probs=103.9

Q ss_pred             CCeeEEEEeccCCCCCc-----hh--hhHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCCccCCc
Q 013308           58 GTRWAVLLAGSNGFWNY-----RH--QADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGV  130 (445)
Q Consensus        58 ~~~wAVlVagS~gw~NY-----RH--qaDv~~~YqiL~~~Gi~denIIvmmyDDiA~n~~Np~pG~i~n~p~g~dvY~gv  130 (445)
                      ...+|+||+=+++ .+-     |+  +.|+-.+-.+|++.||   ++++..                             
T Consensus        20 prG~aLII~n~~f-~~~~~l~~r~Ga~~Da~~l~~~l~~lGF---~V~~~~-----------------------------   66 (277)
T d1nw9b_          20 PCGHCLIINNVNF-CRESGLRTRTGSNIDCEKLRRRFSSLHF---MVEVKG-----------------------------   66 (277)
T ss_dssp             SCEEEEEEECCCC-CGGGTCCCCTTHHHHHHHHHHHHHHTTE---EEEEEE-----------------------------
T ss_pred             cccEEEEEeCccC-CCccCCCCCCCcHHHHHHHHHHHHHCCC---EEEEee-----------------------------
Confidence            3559999987764 221     22  3699999999999999   344432                             


Q ss_pred             cccCCCCCCCHHHHHHHHcCCCCCCCCCCCCcccCCCCCeEEEEeecCCCCC-CcC------CCCCCCCCHHHHHHHHHH
Q 013308          131 PKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPG-VLG------MPTSRYIYADELIDVLKK  203 (445)
Q Consensus       131 ~iDY~g~~Vt~~nfl~vL~G~~~~~~~~s~kvl~S~~~D~VFIY~tdHGg~g-~l~------fpd~~~L~a~dL~~~L~~  203 (445)
                             ++|.+.+.+.|.--..       +  ..++.|.++|||+|||... .+.      -+++..+.-+++...+..
T Consensus        67 -------nlt~~~~~~~l~~~~~-------~--~~~~~d~~v~~~~gHG~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  130 (277)
T d1nw9b_          67 -------DLTAKKMVLALLELAR-------Q--DHGALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNG  130 (277)
T ss_dssp             -------SCCHHHHHHHHHHHHH-------S--CCTTCSEEEEEEEEEEECCCCSSSCCEEECTTSCEEEHHHHHHTTCT
T ss_pred             -------CCCHHHHHHHHHHhhh-------h--cccCCCEEEEEEeCCCcccccccccCcccCCccccccHHHHHHHhHH
Confidence                   3466777776652110       1  1256799999999999652 121      233444555555544432


Q ss_pred             HH-HcCCCceEEEEeeccccccccccc--------------------------------------CCCCCcEEEEeecCC
Q 013308          204 KH-ASGNYKSLVFYLEACESGSIFEGL--------------------------------------LPEGLNIYATTASNA  244 (445)
Q Consensus       204 M~-~~~~Ykkmvf~iEAC~SGSmf~~l--------------------------------------lp~~~nV~a~TASn~  244 (445)
                      .. ..-+-|..+|+++||+++.+-.+.                                      +|...++++.-|+.+
T Consensus       131 ~~~~~l~~kpki~~idaCr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~~i~~st~~  210 (277)
T d1nw9b_         131 TSCPSLGGKPKLFFIQACGGEQKDHGFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLDAISSLPTPSDIFVSYSTFP  210 (277)
T ss_dssp             TTCGGGTTSCEEEEEEEEC---------------------------CBCCC------------CCCCCSCSEEEEEECCC
T ss_pred             hhhhhcccCcEEEEEecccCCcccccccccccCcccccccccccccccchhcccccccccccccccCCcccceEEEeccc
Confidence            11 122335568999999998653321                                      233446666666666


Q ss_pred             CCccccccCCCCCCCCCCCccccchhhhhhhhcccccccccccccHHHHHHHHHhhccC
Q 013308          245 EESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTAS  303 (445)
Q Consensus       245 ~ESSya~yc~~~~~~~~~~~~tcLgD~fS~~wme~~~~~~l~~eTl~~qf~~Vk~~t~~  303 (445)
                      +..||-.          +..    |-+|....++-...+ -..++|.+.+..|.+++..
T Consensus       211 g~~a~~~----------~~~----gS~f~~~L~~~l~~~-~~~~~l~~il~~V~~~V~~  254 (277)
T d1nw9b_         211 GFVSWRD----------PKS----GSWYVETLDDIFEQW-AHSEDLQSLLLRVANAVSV  254 (277)
T ss_dssp             CBSSTTC----------TTS----CBHHHHHHHHHHHHH-TTTSCHHHHHHHHHHHHHT
T ss_pred             ceEEecC----------CCC----CCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHH
Confidence            6665432          112    234555544433221 2346799999999998865

PyMOL of d1nw9b_

>d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-1
species: Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]

Probab=97.18  E-value=0.0011  Score=60.94  Aligned_cols=180  Identities=17%  Similarity=0.226  Sum_probs=109.7

Q ss_pred             eeEEEEeccCCCCC---chh--hhHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCCccCCccccC
Q 013308           60 RWAVLLAGSNGFWN---YRH--QADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDY  134 (445)
Q Consensus        60 ~wAVlVagS~gw~N---YRH--qaDv~~~YqiL~~~Gi~denIIvmmyDDiA~n~~Np~pG~i~n~p~g~dvY~gv~iDY  134 (445)
                      .+|+||+=.++-.+   .|.  ..|+-.+-++|++.||.   +++..                                 
T Consensus        22 G~aLIInN~~f~~~~~~~r~g~~~Da~~l~~~l~~lGF~---V~~~~---------------------------------   65 (256)
T d1m72a_          22 GMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFK---VTVFP---------------------------------   65 (256)
T ss_dssp             EEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCE---EEEEE---------------------------------
T ss_pred             cEEEEEeCCccCCCCCCCCCChHHHHHHHHHHHHHCCCE---EEEEe---------------------------------
Confidence            49999997665333   343  36899999999999995   33321                                 


Q ss_pred             CCCCCCHHHHHHHHcCCCCCCCCCCCCcccCCCCCeEEEEeecCCCCCCcCCCCCCCCCHHHHHHHHHHHHH-cCCCceE
Q 013308          135 TGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHA-SGNYKSL  213 (445)
Q Consensus       135 ~g~~Vt~~nfl~vL~G~~~~~~~~s~kvl~S~~~D~VFIY~tdHGg~g~l~fpd~~~L~a~dL~~~L~~M~~-~~~Ykkm  213 (445)
                         ++|.+.+.++|.--.       .+ . -++.|-++|||.|||+.++|.=-|.. +..+++...+..... .-+-|--
T Consensus        66 ---nlt~~~m~~~l~~~~-------~~-~-~~~~d~~vv~~~~HG~~~~i~~~D~~-~~~~~~~~~~~~~~~~~L~~KPK  132 (256)
T d1m72a_          66 ---NLKSEEINKFIQQTA-------EM-D-HSDADCLLVAVLTHGELGMLYAKDTH-YKPDNLWYYFTADKCPTLAGKPK  132 (256)
T ss_dssp             ---SCCHHHHHHHHHHHH-------TS-C-CTTEEEEEEEEESCEETTEEECSSSE-ECTTHHHHTTSTTTCGGGTTSCE
T ss_pred             ---CCCHHHHHHHHHHHh-------hh-h-ccCCCeEEEEEeccCcCCEEEecCCc-ccchHHhhhhhhhhhHHHcCCcE
Confidence               457778888776211       11 1 13457899999999999977544543 555565544422110 0111234


Q ss_pred             EEEeeccccccccccc----------------CCCCCcEEEEeecCCCCccccccCCCCCCCCCCCccccchhhhhhhhc
Q 013308          214 VFYLEACESGSIFEGL----------------LPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWM  277 (445)
Q Consensus       214 vf~iEAC~SGSmf~~l----------------lp~~~nV~a~TASn~~ESSya~yc~~~~~~~~~~~~tcLgD~fS~~wm  277 (445)
                      +|+++||...-+-.+.                +|...++++.-|+.++..||..              +.-|-+|.-.++
T Consensus       133 if~lqACRg~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~lia~st~~g~~a~~~--------------~~~gS~fi~~L~  198 (256)
T d1m72a_         133 LFFIQACQGDRLDGGITLSRTETDGSPSTSYRIPVHADFLIAFSTVPGYFSWRN--------------TTRGSWFMQALC  198 (256)
T ss_dssp             EEEEESCSSSBCBCCEEEEC---------CEEECTTCSEEEEESSCTTBCCEEE--------------TTTEEHHHHHHH
T ss_pred             EEEEecCcCCcccCCccccccccccccccccccCCCCCeeEEEecccceeeccC--------------CCCCCHHHHHHH
Confidence            8999999875432211                2334467777777777666643              122345555555


Q ss_pred             ccccccccccccHHHHHHHHHhhccC
Q 013308          278 EDSDIHNLRTETLHQQYELVKTRTAS  303 (445)
Q Consensus       278 e~~~~~~l~~eTl~~qf~~Vk~~t~~  303 (445)
                      +-... .-..+.|.+.+..|.+++..
T Consensus       199 ~~l~~-~~~~~~l~~il~~V~~~V~~  223 (256)
T d1m72a_         199 EELRY-AGTERDILTLLTFVCQKVAL  223 (256)
T ss_dssp             HHHHH-HTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHH-hCCCCCHHHHHHHHHHHHHH
Confidence            43322 22456799999999998853

PyMOL of d1m72a_

>d1f1ja_ c.17.1.1 (A:) Caspase-7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.003  Score=57.30  Aligned_cols=181  Identities=15%  Similarity=0.193  Sum_probs=108.2

Q ss_pred             CeeEEEEeccCCCC----Cchh--hhHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCCccCCccc
Q 013308           59 TRWAVLLAGSNGFW----NYRH--QADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPK  132 (445)
Q Consensus        59 ~~wAVlVagS~gw~----NYRH--qaDv~~~YqiL~~~Gi~denIIvmmyDDiA~n~~Np~pG~i~n~p~g~dvY~gv~i  132 (445)
                      .-+|+||+=.++-.    +-|+  ..|+-.+=++|++.||.   +.+..                               
T Consensus        10 rG~aLII~n~~f~~~~~l~~r~g~~~Da~~l~~~l~~lGF~---V~~~~-------------------------------   55 (245)
T d1f1ja_          10 LGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFD---VIVYN-------------------------------   55 (245)
T ss_dssp             EEEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHTEE---EEEEE-------------------------------
T ss_pred             CcEEEEEeCcCCCCcCCCCCCCChHHHHHHHHHHHHHCCCE---EEEec-------------------------------
Confidence            45899998766532    2455  47999999999999993   33331                               


Q ss_pred             cCCCCCCCHHHHHHHHcCCCCCCCCCCCCcccCCCCCeEEEEeecCCCCCCcCCCCCCCCCHHHHHHHHHHHHHc-CCCc
Q 013308          133 DYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHAS-GNYK  211 (445)
Q Consensus       133 DY~g~~Vt~~nfl~vL~G~~~~~~~~s~kvl~S~~~D~VFIY~tdHGg~g~l~fpd~~~L~a~dL~~~L~~M~~~-~~Yk  211 (445)
                           ++|.+.+.+.|.--.       .+..  ...|.++|||.|||..+.|.=.|. .+..+++...+....-. -+-|
T Consensus        56 -----nl~~~em~~~l~~~~-------~~~~--~~~~~~vv~~~~HG~~~~i~g~d~-~~~v~~~~~~~~~~~~~~L~~k  120 (245)
T d1f1ja_          56 -----DCSCAKMQDLLKKAS-------EEDH--TNAACFACILLSHGEENVIYGKDG-VTPIKDLTAHFRGDRSKTLLEK  120 (245)
T ss_dssp             -----SCCHHHHHHHHHHHH-------HSCG--GGEEEEEEEEESCEETTEEECSSS-EEEHHHHHHTTSTTTCGGGTTS
T ss_pred             -----CCCHHHHHHHHHHHH-------HHhc--cCCceEEEEEeeccccceEecCCC-cEEcchhhhhccchhhHHHhhc
Confidence                 456777777777211       0111  245789999999999886554444 36666665554332111 1112


Q ss_pred             eEEEEeeccccccccccc-----------------CCCCCcEEEEeecCCCCccccccCCCCCCCCCCCccccchhhhhh
Q 013308          212 SLVFYLEACESGSIFEGL-----------------LPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSI  274 (445)
Q Consensus       212 kmvf~iEAC~SGSmf~~l-----------------lp~~~nV~a~TASn~~ESSya~yc~~~~~~~~~~~~tcLgD~fS~  274 (445)
                      -.+|+++||.++.+-.++                 +|...++++.-|+.++-.||-.              +--|-+|.-
T Consensus       121 pKif~iqaCrg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~li~~st~~g~~a~~~--------------~~~gS~fi~  186 (245)
T d1f1ja_         121 PKLFFIQACRGTELDDGIQADSGPINDTDANPRYKIPVEADFLFAYSTVPGYYSWRS--------------PGRGSWFVQ  186 (245)
T ss_dssp             CEEEEEESCCSSBCBCCBC---------------CBCTTTTEEEEESSCTTBCCEEE--------------TTTEEHHHH
T ss_pred             chhhehhhhcCcccccceeecCCCCCccccccccccCCCCCeEEEEecCCCceeccC--------------CCCCCHHHH
Confidence            347889999987653321                 1222345555555555444432              122445655


Q ss_pred             hhcccccccccccccHHHHHHHHHhhccC
Q 013308          275 AWMEDSDIHNLRTETLHQQYELVKTRTAS  303 (445)
Q Consensus       275 ~wme~~~~~~l~~eTl~~qf~~Vk~~t~~  303 (445)
                      .+++-...+ -..+.|.+.+..|.+++..
T Consensus       187 ~L~~~l~~~-~~~~~l~~il~~V~~~V~~  214 (245)
T d1f1ja_         187 ALCSILEEH-GKDLEIMQILTRVNDRVAR  214 (245)
T ss_dssp             HHHHHHHHH-TTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh-CCCCCHHHHHHHHHHHHHH
Confidence            555544322 2456799999999988863

PyMOL of d1f1ja_