Citrus Sinensis ID: 013339

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-----
Protein Sequence
MHVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQLPPMSPHDIQPIGDTSPISAQSSIPRRAPRESPSRHHRRRNRRRREKQIELQTEGLRNARKTIIIVAVLIATVTFAAGINPPGGFNQVSGKSLVGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWRKMKEKNRSPNSSISRVEELRMMKKTSHESSNSDLDSSDQGGYHLY
Secondary Structure (PSIPRED)
ccHHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHccccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHcccEEEEHHHHHHHHHcHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHcccccHHccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEcccHHHEEEEEHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHccccccccccccccccccEEcc
Coil and Loop (DISEMBL)
MHVADIVKELLEARQEFAwkkdlnghtplhlscskGHLEITRELLkldpdlsslpdnegrtplhWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITklanmpdndgntiLHLATAGKLTTMVIYLLKLGvdvnainrkgytaldvvesdasnsgalqIVPALeeagarrcdqlppmsphdiqpigdtspisaqssiprraprespsrhhrrRNRRRREKQIELQTEGLRNARKTIIIVAVLIATVTfaaginppggfnqvsgkslvgkqtsFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWRKmkeknrspnssiSRVEELRMMKKtshessnsdldssdqggyhly
Flexible Loop (DISEMBL)
MHVADIVKELLEARQEFAWkkdlnghtplHLSCSKGHLEITRELLKLDPDlsslpdnegrtPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQLPPMSPHDIQPIGdtspisaqssiprraprespsrhhrrrnrrrrekqielqteglrnarkTIIIVAVLIATVTFAAGINPPGGFNQVSGKSLVGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWewrkmkeknrspnssisrvEELRMMKktshessnsdldssdqggyhly
Low Complexity Region (SEG)
MHVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREllkldpdlsslpdNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQLPPMSPHDIQPIGDTSPISAQSSIPrraprespsrhhrrrnrrrreKQIELQTEGLRNARKtiiivavliatvtfaaGINPPGGFNQVSGKSLVGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWRKMKEKNRSPNSSISRVEELRMMKKTshessnsdldssdQGGYHLY
Disordered region (IsUnstruct)
*****IVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLD***********RTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVE**********I*********************************************************************LRNARKTIIIVAVLIATVTFAAGINPPGGFNQVSGKSLVGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWR*********************************************
Disordered Region (DISOPRED)
MHVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQLPPMSPHDIQPIGDTSPI************************************GLRNARKTIIIVAVLIATVTFAAGINPPGGFNQVSGKSLVGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRK**********************************************HL*
Disordered Region (DISEMBL)
MHVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQLPPMSPHDIQPIGDTSP****************************EKQIELQTEGLRNARKTIIIVAVLIATVTFAAGINPPGGFNQVSGKSLVGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWRKM***********SRVEELR*************************
Disordered Region (DISPRO)
MHVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQLPPMSPHDIQPIGDTSPISAQSSIPRRAPRESPSRHHRRRNRRRREKQIELQTEGLRNARKTIIIVAVLIATVTFAAGINPPGGFNQVSGKSLVGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWR*********************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQLPPMSPHDIQPIGDTSPISAQSSIPRRAPRESPSRHHRRRNRRRREKQIELQTEGLRNARKTIIIVAVLIATVTFAAGINPPGGFNQVSGKSLVGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWRKMKEKNRSPNSSISRVEELRMMKKTSHESSNSDLDSSDQGGYHLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	445	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.871	0.657	0.294	4e-37
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.842	0.704	0.273	7e-35
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.842	0.715	0.260	1e-27
Q5F478	990	Serine/threonine-protein	yes	no	0.350	0.157	0.343	2e-13
Q12955	4377	Ankyrin-3 OS=Homo sapiens	yes	no	0.314	0.031	0.326	3e-13
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	yes	no	0.316	0.071	0.321	6e-13
B2RXR6	993	Serine/threonine-protein	no	no	0.384	0.172	0.324	7e-13
Q502K3	1071	Serine/threonine-protein	no	no	0.348	0.144	0.313	2e-12
Q5ZLC8	1073	Serine/threonine-protein	no	no	0.382	0.158	0.315	3e-12
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	no	0.357	0.040	0.321	4e-12

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score =  155 bits (393), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 133/451 (29%), Positives = 208/451 (46%), Gaps = 63/451 (13%)

Query: 5   DIVKELLE-ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSL--PDN---- 57
           D+VKELL+ + +E   KK+ +G+ PLH++  +GH  I   LL  D  LS    P N    
Sbjct: 143 DVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAIVEVLLDHDATLSQTFGPSNATPL 202

Query: 58  ----------------------------EGRTPLHWAAIKGRINIIDEILSLNLQSAEMR 89
                                         +  LH AA +G + +I  +LS + Q A   
Sbjct: 203 VSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLAARQGHVEVIKALLSKDPQLARRI 262

Query: 90  TIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLL 149
              G+T LH+ VK    E VK L++      +   PD   NT LH+AT  K   +V  LL
Sbjct: 263 DKKGQTALHMAVKGQSSEVVKLLLDA--DPAIVMQPDKSCNTALHVATRKKRAEIVELLL 320

Query: 150 KL-GVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQLPPMSPHDIQPIG 208
            L   + N + R   TALD+ E    +  +  I   L  +GA R ++L        QP  
Sbjct: 321 SLPDTNANTLTRDHKTALDIAEGLPLSEESSYIKECLARSGALRANELN-------QPRD 373

Query: 209 DTSPISAQSSIPRRAPRESPSRHHRRRNRRRREKQIELQTEGLRNARKTIIIVAVLIATV 268
           +      Q         E   R ++  +   +E + +L  EG+ NA  ++ +VAVL ATV
Sbjct: 374 ELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELR-KLHREGINNATNSVTVVAVLFATV 432

Query: 269 TFAAGINPPGGFNQVSGKSLVGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMM 328
            FAA    PGG N   G ++V  + SFK+F + N +ALF SL +V+  ++++  + K+  
Sbjct: 433 AFAAIFTVPGGDNN-DGSAVVVGRASFKIFFIFNALALFTSLAVVVVQITLVRGETKAEK 491

Query: 329 QLLVVTHRVMWL-----SVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFT 383
           +++ V +++MWL     SV+FLA++YI         GR   W +  V  +GG     I  
Sbjct: 492 RVVEVINKLMWLASMCTSVAFLASSYIVV-------GRKNEWAAELVTVVGG----VIMA 540

Query: 384 GLGVLLARHWLRKWEWRKMKEKNRSPNSSIS 414
           G+   +  + ++    R M++K +S   S S
Sbjct: 541 GVLGTMTYYVVKSKRTRSMRKKVKSARRSGS 571

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score =  148 bits (374), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 109/399 (27%), Positives = 192/399 (48%), Gaps = 24/399 (6%)

Query: 6   IVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHW 65
           IVKELL    E     D +  +PL+ +  + HLEI   +L +DP  + +    G+T LH 
Sbjct: 109 IVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAMIVRKNGKTSLHT 168

Query: 66  AAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMP 125
           A   G + I+  ++  +     ++   G+T LH+ VK    E V+ +++  + T L N  
Sbjct: 169 AGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMAVKGRSLEVVEEILQA-DYTIL-NER 226

Query: 126 DNDGNTILHLATAGKLTTMVIYLLKL-GVDVNAINRKGYTALDVVESDASNSGALQIVPA 184
           D  GNT LH+AT      +   LL    ++VNAIN +  TA+D+ +    +  AL+I  A
Sbjct: 227 DRKGNTALHIATRKARPQITSLLLTFTAIEVNAINNQKETAMDLADKLQYSESALEINEA 286

Query: 185 LEEAGARRCDQLPPMSPHDIQPIGDTSPISAQSSIPRRAPRESPSRHHRRRNRRRREKQI 244
           L EAGA+             + IG      A          E  S+  +     RR   I
Sbjct: 287 LVEAGAKHG-----------RFIGREDEARALKRAVSDIKHEVQSQLLQNEKTNRRVSGI 335

Query: 245 -----ELQTEGLRNARKTIIIVAVLIATVTFAAGINPPGG-FNQVS--GKSLVGKQTSFK 296
                +L  E ++N   +I +VAVL A++ F A  N PG  F + S  G++ +  +T F+
Sbjct: 336 AKELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYFTEGSHVGQANIAGRTGFR 395

Query: 297 VFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTI 356
           VF + N  +LF+SL +V+  ++++ +  ++  +++ V +++MW + +    A++A  + +
Sbjct: 396 VFCLLNATSLFISLAVVVVQITLVAWDTRAQKKVVSVVNKLMWAACACTFGAFLAIAFAV 455

Query: 357 LPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLR 395
           +  G+G  W++  +  LG    +     +   + R   R
Sbjct: 456 V--GKGNSWMAITITLLGAPILVGTLASMCYFVFRQRFR 492

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score =  125 bits (313), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 114/437 (26%), Positives = 201/437 (45%), Gaps = 62/437 (14%)

Query: 5   DIVKELLE-ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPL 63
           D+VK L++ +    A  K  NG    H++   G+L++   L++ +P+LS   D+   T L
Sbjct: 70  DMVKILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSSKTTAL 129

Query: 64  HWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLH------------------------- 98
           H AA +G   I+  +L   +  A +   +G+T LH                         
Sbjct: 130 HTAASQGHGEIVCFLLDKGVDLAAIARSNGKTALHSAARNGHTVIVKKLIEKKAGMVTRV 189

Query: 99  ---------LTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLL 149
                    + VK    E V  LME      L N  DN GNT LH+A       +V  +L
Sbjct: 190 DKKGQTALHMAVKGQNTEIVDVLMEADG--SLINSADNKGNTPLHIAVRKNRAEIVQTVL 247

Query: 150 K-LGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQLPPMSPHDIQPIG 208
           K   V   A+N+ G TALD+ E     +G  +IVP L++ G +    + P     ++P G
Sbjct: 248 KYCEVSRVAVNKSGETALDIAE----KTGLHEIVPLLQKIGMQNARSIKP--AEKVEPSG 301

Query: 209 DTSPISAQ-SSIPRRAPRESPSRHHRRRNRRRREKQI-ELQTEGLRNARKTIIIVAVLIA 266
            +  +    S I      +       RR  +   K++ ++ TEGL NA  +  +VA+LIA
Sbjct: 302 SSRKLKETVSEIGHEVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAINSTTLVAILIA 361

Query: 267 TVTFAAGINPPGGFNQVS---------GKSLVGKQTSFKVFMVCNIVALFLSLGIVIFLV 317
           TV FAA  N PG +             G++    +  F +F+V +  ALF+SL +V+   
Sbjct: 362 TVAFAAIFNVPGQYTDDPKDVPPGYSLGEARAAPRPEFLIFVVFDSFALFISLAVVVVQT 421

Query: 318 SIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGMVWVSAAVVSLGGGF 377
           S++  +R++  Q++ + +++MW++   ++ A+++  + ++  G     ++  V ++G   
Sbjct: 422 SVVVIERRAKKQMMAIINKLMWMACIMISVAFVSLSFVVV--GEKEKPLAVGVTAIGA-- 477

Query: 378 TLAIFTGLGVLLARHWL 394
            L + + LG +   +W+
Sbjct: 478 -LIMVSTLGTMC--YWV 491

Arabidopsis thaliana (taxid: 3702)

>sp|Q5F478|ANR44_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Gallus gallus GN=ANKRD44 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 81/166 (48%), Gaps = 10/166 (6%)

Query: 5   DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK--LDPDLSSLPDNEGRTP 62
           + V+ LLE ++     KD  G TPLH + ++GH     ELL+  L  +  SL DN+G TP
Sbjct: 714 ECVQMLLE-KEVSILCKDARGRTPLHFAAARGHATWLSELLQIALSEEDCSLKDNQGYTP 772

Query: 63  LHWAAIKGRINIIDEILSLNLQSAEMRTIHGETV--LHLTVKNNQYEAVKYLMETLNITK 120
           LHWA   G  N I E+L   L+    R  +G +   LH  V N+       L+  ++ + 
Sbjct: 773 LHWACYNGHENCI-EVL---LEQKFFRKFYGNSFSPLHCAVINDHENCASMLIGAIDAS- 827

Query: 121 LANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTAL 166
           + N  D+ G T LH A        +  LL     VNA++  G TAL
Sbjct: 828 IVNCKDDKGRTPLHAAAFADHVECLQLLLSHSAQVNAVDHAGKTAL 873

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 76.6 bits (187), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 7/147 (4%)

Query: 21  KDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILS 80
           K LNG TPLH++C K  +++   LLK    + ++ ++ G TP+H AA  G +NI+ +++ 
Sbjct: 396 KALNGFTPLHIACKKNRIKVMELLLKHGASIQAVTES-GLTPIHVAAFMGHVNIVSQLMH 454

Query: 81  LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET-LNITKLANMPDNDGNTILHLATAG 139
               S     + GET LH+  ++ Q E V+YL++    +   A     D  T LH++   
Sbjct: 455 HGA-SPNTTNVRGETALHMAARSGQAEVVRYLVQDGAQVEAKA----KDDQTPLHISARL 509

Query: 140 KLTTMVIYLLKLGVDVNAINRKGYTAL 166
               +V  LL+ G   NA    GYT L
Sbjct: 510 GKADIVQQLLQQGASPNAATTSGYTPL 536

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 74/146 (50%), Gaps = 5/146 (3%)

Query: 21  KDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILS 80
           K LNG TPLH++C K  + +   LLK    + ++ ++ G TP+H AA  G +NI+ +++ 
Sbjct: 379 KALNGFTPLHIACKKNRIRVMELLLKHGASIQAVTES-GLTPIHVAAFMGHVNIVSQLMH 437

Query: 81  LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGK 140
            +  S     + GET LH+  ++ Q E V+YL++             D  T LH++    
Sbjct: 438 -HGASPNTTNVRGETALHMAARSGQAEVVRYLVQD---GAQVEAKAKDDQTPLHISARLG 493

Query: 141 LTTMVIYLLKLGVDVNAINRKGYTAL 166
              +V  LL+ G   NA    GYT L
Sbjct: 494 KADIVQQLLQQGASPNAATTSGYTPL 519

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|B2RXR6|ANR44_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Mus musculus GN=Ankrd44 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 88/182 (48%), Gaps = 11/182 (6%)

Query: 5   DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK--LDPDLSSLPDNEGRTP 62
           + V+ LLE       K D  G TPLH + ++GH     ELL+  L  +   L DN+G TP
Sbjct: 717 ECVQMLLEQEASILCK-DSRGRTPLHYAAARGHATWLNELLQIALSEEDCCLKDNQGYTP 775

Query: 63  LHWAAIKGRINIIDEILSLNLQSAEMRTIHGE--TVLHLTVKNNQYEAVKYLMETLNITK 120
           LHWA   G  N I E+L   L+    R   G   T LH  + N        L+  ++ + 
Sbjct: 776 LHWACYNGNENCI-EVL---LEQKCFRKFIGNPFTPLHCAIINGHESCASLLLGAIDPS- 830

Query: 121 LANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQ 180
           + +  D+ G T LH A  G     +  LL+    VNA++  G TAL ++ ++   +GA+ 
Sbjct: 831 IVSCRDDKGRTTLHAAAFGDHAECLQLLLRHDAQVNAVDNSGKTAL-MMAAENGQAGAVD 889

Query: 181 IV 182
           I+
Sbjct: 890 IL 891

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Mus musculus (taxid: 10090)

>sp|Q502K3|ANR52_DANRE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Danio rerio GN=ankrd52 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 14/169 (8%)

Query: 21  KDLNGHTPLHLSCSKGHLEITRELLKL-------DPDLSSLPDNEGRTPLHWAAIKGRIN 73
           +D  G + LHL+ S GH +I   LL         DP    L D  G TP HWAA  G  +
Sbjct: 744 RDFQGRSALHLAASCGHADILSNLLSAADHSQPQDP----LTDRHGYTPAHWAAYHGHED 799

Query: 74  IIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTIL 133
            + E+L L L+   ++  +  T LH  + N    + + L+E+     L N+ D  G T L
Sbjct: 800 CL-EVL-LELKPCSIQEGNPFTPLHCALINGHSGSAELLLESSVCNSLVNIRDAKGRTPL 857

Query: 134 HLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
           H A   +    +  +L+ G D++A++  G +AL +V +D   SGA+ ++
Sbjct: 858 HAAAVAEDVAGLQLVLRQGADIDAVDHSGRSAL-MVAADYGQSGAVALL 905

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Danio rerio (taxid: 7955)

>sp|Q5ZLC8|ANR52_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Gallus gallus GN=ANKRD52 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 90/184 (48%), Gaps = 14/184 (7%)

Query: 5   DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK----LDPDLSSLPDNEGR 60
           D +  LL+    F   +D  G TP+H + + GHLEI R LL+     DP L S+ D  G 
Sbjct: 734 DCLAALLD-HDAFVLCRDFKGRTPIHFASACGHLEILRTLLQAALSTDP-LDSVVDYSGY 791

Query: 61  TPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGE--TVLHLTVKNNQYEAVKYLMETLNI 118
           +P+HWA+  G     ++ L L L+      + G   T LH  V NNQ    + L+E L  
Sbjct: 792 SPMHWASYSGH----EDCLELLLEHNPFAYLEGNPFTPLHCAVINNQDSTAEMLVEALG- 846

Query: 119 TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGA 178
            K+ N  D  G T LH A        +  LL+   +V+  ++ G T L ++ S+  ++ A
Sbjct: 847 AKIVNSRDAKGRTPLHAAAFADNIHGLQLLLRHQAEVDTTDKLGRTPL-MMASENGHTAA 905

Query: 179 LQIV 182
           ++ +
Sbjct: 906 VEFL 909

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 73.2 bits (178), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 9/168 (5%)

Query: 23  LNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLN 82
           LNG TPLH++C K  +++   L+K    + ++ ++ G TP+H AA  G +NI+  +L  N
Sbjct: 396 LNGFTPLHIACKKNRIKVMELLVKYGASIQAITES-GLTPIHVAAFMGHLNIV-LLLLQN 453

Query: 83  LQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLT 142
             S ++  I GET LH+  +  Q E V+ L   L    L +    +  T LH+A+    T
Sbjct: 454 GASPDVTNIRGETALHMAARAGQVEVVRCL---LRNGALVDARAREEQTPLHIASRLGKT 510

Query: 143 TMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
            +V  LL+     +A    GYT L +    ++  G + +   L EAGA
Sbjct: 511 EIVQLLLQHMAHPDAATTNGYTPLHI----SAREGQVDVASVLLEAGA 554

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	445
359476356	601	PREDICTED: ankyrin repeat-containing pro	0.988	0.732	0.705	1e-176
224142976	591	predicted protein [Populus trichocarpa]	0.982	0.739	0.721	1e-173
255550978	595	ankyrin repeat-containing protein, putat	0.988	0.739	0.691	1e-172
147765315	580	hypothetical protein VITISV_020094 [Viti	0.941	0.722	0.665	1e-161
225430027	595	PREDICTED: ankyrin repeat-containing pro	0.984	0.736	0.607	1e-143
296081857	470	unnamed protein product [Vitis vinifera]	0.692	0.655	0.735	1e-140
296081888	600	unnamed protein product [Vitis vinifera]	0.977	0.725	0.6	1e-139
147812174	574	hypothetical protein VITISV_033967 [Viti	0.957	0.742	0.576	1e-134
297743226	1064	unnamed protein product [Vitis vinifera]	0.928	0.388	0.413	2e-83
224059128	534	predicted protein [Populus trichocarpa]	0.862	0.719	0.436	9e-78

>gi|359476356|ref|XP_003631824.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]

 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 318/451 (70%), Positives = 383/451 (84%), Gaps = 11/451 (2%)

Query: 5   DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLH 64
           D+VKE++  R +F+WKKD  G TPLHL+CSKGHLEITRELL+LDPDL+SL DN+GRTPLH
Sbjct: 152 DVVKEIIRERPDFSWKKDSQGCTPLHLACSKGHLEITRELLRLDPDLTSLQDNDGRTPLH 211

Query: 65  WAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM 124
           WAA+KGR+NIIDEILS++LQSAEMRT HGETVLHL VKNNQYEAVKYL ETLNI++L N 
Sbjct: 212 WAAMKGRVNIIDEILSVSLQSAEMRTEHGETVLHLAVKNNQYEAVKYLTETLNISQLLNT 271

Query: 125 PDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPA 184
           PD+DGNTILHLATAGKLTT V+YLLKLGV+VNA+NRKGYT LDVVE+DASNSG+L +VPA
Sbjct: 272 PDSDGNTILHLATAGKLTTTVLYLLKLGVNVNALNRKGYTPLDVVETDASNSGSLVVVPA 331

Query: 185 LEEAGARRCDQLPPMSPHDIQPIGDTSPISAQSSIPR------RAPRESPSRHHRRRNRR 238
           L EAGA+RCDQLPP+S  +IQ I + S      + P       + P ESP++HHRR+++R
Sbjct: 332 LLEAGAKRCDQLPPVS-QEIQTITEPSSGRLYPTSPNLPPPWPKRPPESPAKHHRRKHQR 390

Query: 239 RREKQIELQTEGLRNARKTIIIVAVLIATVTFAAGINPPGGFNQVSGKSLVGKQTSFKVF 298
           RREKQ+E QTEGLRNAR TI +VAVLIATVTF+AG+NPPGGFNQ SGK+++GK+T FKVF
Sbjct: 391 RREKQLEQQTEGLRNARNTITVVAVLIATVTFSAGVNPPGGFNQSSGKAIMGKKTPFKVF 450

Query: 299 MVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILP 358
           MVCNI+ALFLSLGIVI LVSIIPF+RKSMM+LL+ TH+VMW+SV+F+AAAYIAA WTILP
Sbjct: 451 MVCNILALFLSLGIVIVLVSIIPFRRKSMMKLLISTHKVMWMSVTFMAAAYIAATWTILP 510

Query: 359 RGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWRKMKEKNR--SPNSSI-SR 415
            G    WV   +VS+GGG T+ I  GLGVLL +HWLRKWEW+K K KN+  SP+SS+ SR
Sbjct: 511 GGPSTKWVLVTLVSIGGGCTMTICVGLGVLLIQHWLRKWEWKKTKRKNKDGSPHSSMNSR 570

Query: 416 VEELRMMKKTSHES-SNSDLDSSDQGGYHLY 445
           V E++ +K+  H+S SNSD+DSS++GGYHLY
Sbjct: 571 VGEMQTIKRGDHDSTSNSDVDSSEKGGYHLY 601

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142976|ref|XP_002324803.1| predicted protein [Populus trichocarpa] gi|222866237|gb|EEF03368.1| predicted protein [Populus trichocarpa]

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 321/445 (72%), Positives = 375/445 (84%), Gaps = 8/445 (1%)

Query: 5   DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLH 64
           DIVKE+L+AR +FAWK DL G +PLHL C KGHLE+TRELL+ D +LSSL DN+GRTPLH
Sbjct: 151 DIVKEILKARPDFAWKNDLQGCSPLHLCCKKGHLEVTRELLRFDAELSSLQDNDGRTPLH 210

Query: 65  WAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM 124
           WAAIKGR+N+IDEILS +L+SAE+ T HGETVLHL VKNNQYEAVKYL E LNITKL + 
Sbjct: 211 WAAIKGRVNVIDEILSTSLESAEVITKHGETVLHLGVKNNQYEAVKYLTEMLNITKLVDK 270

Query: 125 PDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPA 184
           PDNDGNT LHLATAGKL+TMVIYLLKLGVDVNAIN++G TA DVVESD SNSG L I+PA
Sbjct: 271 PDNDGNTALHLATAGKLSTMVIYLLKLGVDVNAINQRGQTAFDVVESDVSNSGVLLILPA 330

Query: 185 LEEAGARRCDQLPPMSPHDIQPIGDTSPISAQSSIPRRAPRESPSRHHRRRNRRRREKQI 244
           L++AG +R DQLPP S  +IQ I     + + S+   +   ES ++HHRR   RRREKQ+
Sbjct: 331 LQDAGGKRSDQLPP-SSIEIQQIQQEKSLLSSST---KRMTESTTKHHRRSQHRRREKQL 386

Query: 245 ELQTEGLRNARKTIIIVAVLIATVTFAAGINPPGGFNQVSGKSLVGKQTSFKVFMVCNIV 304
           ELQTEGLRNAR TII+VAVLIATVTFAAGINPPGGF Q +G+S  G+ +SFK+F+VCNIV
Sbjct: 387 ELQTEGLRNARNTIIVVAVLIATVTFAAGINPPGGFRQDTGESTTGRHSSFKIFVVCNIV 446

Query: 305 ALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILP--RGRG 362
           ALFLSLG V+FLVSI+PFQRKSMM LL VTH+VMWLS+SF+AA YIAA+WTILP  RGRG
Sbjct: 447 ALFLSLGTVVFLVSIVPFQRKSMMILLTVTHKVMWLSISFMAAGYIAAMWTILPHGRGRG 506

Query: 363 MVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWRKMKE--KNRSPNSSISRVEELR 420
             WV  A+V++GGG T+AIF GLGVLLA+HWLRKWEWR+ KE  KN SP+SS+SRVEEL 
Sbjct: 507 RQWVFVAIVAIGGGCTMAIFVGLGVLLAKHWLRKWEWRRSKEKRKNESPSSSVSRVEELG 566

Query: 421 MMKKTSHESSNSDLDSSDQGGYHLY 445
           MM+K SH+SSNSD+DSSD+GGYHLY
Sbjct: 567 MMRKGSHDSSNSDVDSSDKGGYHLY 591

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550978|ref|XP_002516537.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223544357|gb|EEF45878.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 309/447 (69%), Positives = 378/447 (84%), Gaps = 7/447 (1%)

Query: 4   ADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPL 63
           A+IV+E+++ RQ+FAWK+D+NG TPLHL+CSKGHLE TRELLK D DLSSL DN+GRTPL
Sbjct: 151 AEIVREIMKIRQDFAWKRDINGCTPLHLACSKGHLETTRELLKYDADLSSLQDNDGRTPL 210

Query: 64  HWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLAN 123
           HWAAIKGR+N+IDE+LS++L+ AEM T +GETVLHL VKNNQ++AVKYLMETLNIT L N
Sbjct: 211 HWAAIKGRVNVIDEVLSVSLEPAEMITKNGETVLHLGVKNNQFDAVKYLMETLNITNLIN 270

Query: 124 MPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVP 183
            PD DGNT LHLATAGKL+ MVIYLLKL  DVN INRKG T LDVVESD SNSGAL I+P
Sbjct: 271 RPDKDGNTALHLATAGKLSAMVIYLLKLNGDVNVINRKGQTVLDVVESDVSNSGALLILP 330

Query: 184 ALEEAGARRCDQLPPMSPHDIQPIGDTSPISAQSSIPRRAPRESPSRHHRRRNRRRREKQ 243
           A+++AG +R DQLPP S    Q + + +P S  SS P++   +SP+ HHRR++RRRREKQ
Sbjct: 331 AIQDAGGKRGDQLPPGSTEIHQIVQEYNP-SLPSSPPKKV-LDSPNHHHRRKHRRRREKQ 388

Query: 244 IELQTEGLRNARKTIIIVAVLIATVTFAAGINPPGGFNQVSGKSLVGKQTSFKVFMVCNI 303
           +E Q+EGLRNAR TI +V+VLIATVTFAAGINPPGGFNQ+SG++++GK TSFKVF VCN+
Sbjct: 389 LEDQSEGLRNARNTITVVSVLIATVTFAAGINPPGGFNQLSGRTIMGKHTSFKVFAVCNV 448

Query: 304 VALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGM 363
           VALF SLGIVI LVSIIPF+RKSMM+LLVVTH++MW+S+SF+AAAYIAA+WT+LP G+G 
Sbjct: 449 VALFTSLGIVIVLVSIIPFRRKSMMKLLVVTHKIMWVSMSFMAAAYIAAMWTVLPHGQGW 508

Query: 364 --VWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWRKMKEKNR--SPNSSISRVEEL 419
             VWV  A+ ++GGG T+ IF GLG LLA+HW+RK EWRK K+K +  SP+SSISR+EEL
Sbjct: 509 GGVWVLVAIAAIGGGCTVGIFMGLGFLLAQHWIRKSEWRKNKDKRKDASPSSSISRIEEL 568

Query: 420 RMMKKTSHES-SNSDLDSSDQGGYHLY 445
           + +K+   +S SNSD+DSSDQGGYHLY
Sbjct: 569 KTIKRGDCDSTSNSDVDSSDQGGYHLY 595

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147765315|emb|CAN66947.1| hypothetical protein VITISV_020094 [Vitis vinifera]

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 300/451 (66%), Positives = 363/451 (80%), Gaps = 32/451 (7%)

Query: 5   DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLH 64
           D+VKE++  R +F+WKKD  G TPLHL+CSKGHLEITRELL+LDPDL+SL DN+GRTPLH
Sbjct: 152 DVVKEIIRERPDFSWKKDSQGCTPLHLACSKGHLEITRELLRLDPDLTSLQDNDGRTPLH 211

Query: 65  WAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM 124
           WAA+KGR+NIIDEILS++LQSAEMRT HGETVLHL VKNNQYEAVKYL ETLNI++L N 
Sbjct: 212 WAAMKGRVNIIDEILSVSLQSAEMRTEHGETVLHLXVKNNQYEAVKYLTETLNISQLLNT 271

Query: 125 PDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPA 184
           PD+DGNTILHLATAGKLTT V+YLLKLGV+VNA+NRKGYT LDVVE+DASNSG+L +VPA
Sbjct: 272 PDSDGNTILHLATAGKLTTTVLYLLKLGVNVNALNRKGYTPLDVVETDASNSGSLVVVPA 331

Query: 185 LEEAGARRCDQLPPMSPHDIQPIGDTSPISAQSSIPR------RAPRESPSRHHRRRNRR 238
           L EAGA+RCDQLPP+S  +IQ I + S      + P       + P ESP++HHRR+++R
Sbjct: 332 LLEAGAKRCDQLPPVS-QEIQTITEPSSGRLYPTSPNLPPPWPKRPPESPAKHHRRKHQR 390

Query: 239 RREKQIELQTEGLRNARKTIIIVAVLIATVTFAAGINPPGGFNQVSGKSLVGKQTSFKVF 298
           RREKQ+E QTEGLRNAR TI +VAVLIATVTF+AGINPPGGFNQ SGK++          
Sbjct: 391 RREKQLEQQTEGLRNARNTITVVAVLIATVTFSAGINPPGGFNQSSGKAI---------- 440

Query: 299 MVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILP 358
                      +GIVI LVSIIPF+RKSMM+LL+ TH+VMW+S +F+AAAYIAA WTILP
Sbjct: 441 -----------MGIVIVLVSIIPFRRKSMMKLLISTHKVMWMSATFMAAAYIAATWTILP 489

Query: 359 RGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWRKMKEKNR--SPNSSI-SR 415
            G    WV   ++S+GGG T+ IF GLGVLL +HWLRKWEW+K K KN+  SP+SS+ SR
Sbjct: 490 GGPSTKWVLVTLISIGGGCTMTIFVGLGVLLIQHWLRKWEWKKTKRKNKDGSPHSSMNSR 549

Query: 416 VEELRMMKKTSHES-SNSDLDSSDQGGYHLY 445
           V E++ +K+  H+S SNSD+DSS++GGYHLY
Sbjct: 550 VGEMQTIKRGDHDSTSNSDVDSSEKGGYHLY 580

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430027|ref|XP_002281561.1| PREDICTED: ankyrin repeat-containing protein At3g12360 [Vitis vinifera]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 272/448 (60%), Positives = 347/448 (77%), Gaps = 10/448 (2%)

Query: 5   DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLH 64
           DIVKE+L+ R +FA +KDL+G  PLHL+CSKGHLE+T ELL+LDPDL+SL D +G TPLH
Sbjct: 151 DIVKEILKVRPDFAREKDLDGCIPLHLACSKGHLEVTSELLRLDPDLTSLQDKDGLTPLH 210

Query: 65  WAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM 124
           WA IKG +NIID+IL++ L  A+  T HGETVLHL VKNN+YEAV+YLME LN T+L N 
Sbjct: 211 WAIIKGHLNIIDKILAIGLHLAQTTTKHGETVLHLGVKNNRYEAVQYLMEKLNFTQLLNT 270

Query: 125 PDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGA-LQIVP 183
           PD +GNTILHLA AGKLTTMV YLL+LGVDVNA N KG+T+LDV+ SDASNS A L+IV 
Sbjct: 271 PDKNGNTILHLAAAGKLTTMVKYLLELGVDVNAQNCKGFTSLDVITSDASNSKAGLEIVT 330

Query: 184 ALEEAGARRCDQLPPMSP---HDIQPI-GDTSPISAQSSIPRRAPRESPSRHHRRRNRRR 239
           AL +AGA+RC QL P SP    + QP  G  + ++  S  P+  P +SP +HH +++ + 
Sbjct: 331 ALCQAGAKRCSQLSPASPEIQENHQPTSGVLNSLNVASPWPKVMP-DSPVQHHNKKHDQS 389

Query: 240 REKQIELQTEGLRNARKTIIIVAVLIATVTFAAGINPPGGFNQVSGKSLVGKQTSFKVFM 299
           R+K ++ Q EGLRNAR    +VAVL+ATVTF+AGINPPGGFNQ +GKS++GKQT FKVFM
Sbjct: 390 RKKLLD-QNEGLRNARNKFTVVAVLVATVTFSAGINPPGGFNQDTGKSMLGKQTPFKVFM 448

Query: 300 VCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPR 359
           VCNI+ALFLSL IVI LVS+IP++R SMM+LLV TH+VMW+S+ F+AAAY+AA W I+P 
Sbjct: 449 VCNILALFLSLSIVIVLVSVIPYRRTSMMRLLVFTHKVMWVSMIFMAAAYMAATWMIIPP 508

Query: 360 GRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWRKMKEKNR-SPNSSISRVEE 418
           G G  W  A ++ LGGG T+AIF   G++L R + RK++ RK+  K    P++ IS   E
Sbjct: 509 GPGSRWEFAVLLCLGGGCTMAIFLITGMVLVRQF-RKYQLRKVNAKTYGGPDNIISHAGE 567

Query: 419 LRMMKKTSHESS-NSDLDSSDQGGYHLY 445
           ++M+K+  +ES+ NSD+DSSDQGGYHLY
Sbjct: 568 MQMIKRHGYESTCNSDVDSSDQGGYHLY 595

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081857|emb|CBI20862.3| unnamed protein product [Vitis vinifera]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 247/336 (73%), Positives = 284/336 (84%), Gaps = 28/336 (8%)

Query: 25  GHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQ 84
           G TPLHL+CSKGHLEITRELL+LDPDL+SL DN+GRTPLHWAA+KGR+NIIDEILS++LQ
Sbjct: 152 GCTPLHLACSKGHLEITRELLRLDPDLTSLQDNDGRTPLHWAAMKGRVNIIDEILSVSLQ 211

Query: 85  SAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTM 144
           SAEMRT HGETVLHL VKNNQYEAVKYL ETLNI++L N PD+DGNTILHLATAGKLTT 
Sbjct: 212 SAEMRTEHGETVLHLAVKNNQYEAVKYLTETLNISQLLNTPDSDGNTILHLATAGKLTTT 271

Query: 145 VIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQLPPMSPHDI 204
           V+YLLKLGV+VNA+NRKGYT LDVVE+DASNSG+L +VPAL EAGA+RCDQLPP+S  +I
Sbjct: 272 VLYLLKLGVNVNALNRKGYTPLDVVETDASNSGSLVVVPALLEAGAKRCDQLPPVS-QEI 330

Query: 205 QPIGDTSPISAQSSIPRRAPRESPSRHHRRRNRRRREKQIELQTEGLRNARKTIIIVAVL 264
           Q I + S                           RREKQ+E QTEGLRNAR TI +VAVL
Sbjct: 331 QTITEPS---------------------------RREKQLEQQTEGLRNARNTITVVAVL 363

Query: 265 IATVTFAAGINPPGGFNQVSGKSLVGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQR 324
           IATVTF+AG+NPPGGFNQ SGK+++GK+T FKVFMVCNI+ALFLSLGIVI LVSIIPF+R
Sbjct: 364 IATVTFSAGVNPPGGFNQSSGKAIMGKKTPFKVFMVCNILALFLSLGIVIVLVSIIPFRR 423

Query: 325 KSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRG 360
           KSMM+LL+ TH+VMW+SV+F+AAAYIAA WTILP G
Sbjct: 424 KSMMKLLISTHKVMWMSVTFMAAAYIAATWTILPGG 459

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081888|emb|CBI20893.3| unnamed protein product [Vitis vinifera]

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 267/445 (60%), Positives = 343/445 (77%), Gaps = 10/445 (2%)

Query: 5   DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLH 64
           DIVKE+L+ R +FA +KDL+G  PLHL+CSKGHLE+T ELL+LDPDL+SL D +G TPLH
Sbjct: 151 DIVKEILKVRPDFAREKDLDGCIPLHLACSKGHLEVTSELLRLDPDLTSLQDKDGLTPLH 210

Query: 65  WAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM 124
           WA IKG +NIID+IL++ L  A+  T HGETVLHL VKNN+YEAV+YLME LN T+L N 
Sbjct: 211 WAIIKGHLNIIDKILAIGLHLAQTTTKHGETVLHLGVKNNRYEAVQYLMEKLNFTQLLNT 270

Query: 125 PDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGA-LQIVP 183
           PD +GNTILHLA AGKLTTMV YLL+LGVDVNA N KG+T+LDV+ SDASNS A L+IV 
Sbjct: 271 PDKNGNTILHLAAAGKLTTMVKYLLELGVDVNAQNCKGFTSLDVITSDASNSKAGLEIVT 330

Query: 184 ALEEAGARRCDQLPPMSPH---DIQPI-GDTSPISAQSSIPRRAPRESPSRHHRRRNRRR 239
           AL +AGA+RC QL P SP    + QP  G  + ++  S  P+  P +SP +HH +++ + 
Sbjct: 331 ALCQAGAKRCSQLSPASPEIQENHQPTSGVLNSLNVASPWPKVMP-DSPVQHHNKKHDQS 389

Query: 240 REKQIELQTEGLRNARKTIIIVAVLIATVTFAAGINPPGGFNQVSGKSLVGKQTSFKVFM 299
           R+K ++ Q EGLRNAR    +VAVL+ATVTF+AGINPPGGFNQ +GKS++GKQT FKVFM
Sbjct: 390 RKKLLD-QNEGLRNARNKFTVVAVLVATVTFSAGINPPGGFNQDTGKSMLGKQTPFKVFM 448

Query: 300 VCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPR 359
           VCNI+ALFLSL IVI LVS+IP++R SMM+LLV TH+VMW+S+ F+AAAY+AA W I+P 
Sbjct: 449 VCNILALFLSLSIVIVLVSVIPYRRTSMMRLLVFTHKVMWVSMIFMAAAYMAATWMIIPP 508

Query: 360 GRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWRKMKEKNRS-PNSSISRVEE 418
           G G  W  A ++ LGGG T+AIF   G++L R + RK++ RK+  K    P++ IS   E
Sbjct: 509 GPGSRWEFAVLLCLGGGCTMAIFLITGMVLVRQF-RKYQLRKVNAKTYGGPDNIISHAGE 567

Query: 419 LRMMKKTSHESS-NSDLDSSDQGGY 442
           ++M+K+  +ES+ NSD+DSSDQG +
Sbjct: 568 MQMIKRHGYESTCNSDVDSSDQGEH 592

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147812174|emb|CAN61518.1| hypothetical protein VITISV_033967 [Vitis vinifera]

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 260/451 (57%), Positives = 333/451 (73%), Gaps = 25/451 (5%)

Query: 2   HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRT 61
           +  DIVKE+L+ R +FA +KD +G TPLHL+CSKGHLE+T ELL+LDPDL+SL D +G T
Sbjct: 142 YFTDIVKEILKVRPDFAREKDFDGCTPLHLACSKGHLEVTSELLRLDPDLTSLQDKDGLT 201

Query: 62  PLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKL 121
           PLHWA IKG +NIID+IL++ L  A+  T HGETVLHL VKNN+YEAV+YLME LN T+L
Sbjct: 202 PLHWAIIKGHLNIIDKILAIGLHLAQTTTKHGETVLHLGVKNNRYEAVQYLMEKLNFTQL 261

Query: 122 ANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGA-LQ 180
            N PD +GNTILHLA AGKLTT               N KG+T+LDV+ SDASNS A L+
Sbjct: 262 LNTPDKNGNTILHLAAAGKLTT---------------NCKGFTSLDVITSDASNSKAGLE 306

Query: 181 IVPALEEAGARRCDQLPPMSP---HDIQPI-GDTSPISAQSSIPRRAPRESPSRHHRRRN 236
           IV AL +AGA+RC QL P SP    + QP  G  + ++  S  P+  P +SP +HH  ++
Sbjct: 307 IVTALCQAGAKRCSQLSPASPEIQENHQPTSGVLNSLNVASPWPKXMP-DSPVQHHNXKH 365

Query: 237 RRRREKQIELQTEGLRNARKTIIIVAVLIATVTFAAGINPPGGFNQVSGKSLVGKQTSFK 296
            + R+K ++ Q EGLRNAR    +VAVL+ATVTF+AGINPPGGFNQ +GKS++GKQT FK
Sbjct: 366 DQSRKKLLD-QNEGLRNARNKFTVVAVLVATVTFSAGINPPGGFNQXTGKSMLGKQTPFK 424

Query: 297 VFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTI 356
           VFMVCNI+ALFLSL IVI LVS+IP++R SMM+LLV TH+VMW+S+ F+AAAY+AA W I
Sbjct: 425 VFMVCNILALFLSLSIVIVLVSVIPYRRTSMMRLLVFTHKVMWVSMIFMAAAYMAATWMI 484

Query: 357 LPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWRKMKEKNR-SPNSSISR 415
           +P G G  W  A ++ LGGG T+AIF   G++L R + RK++ RK+  K    P+  IS 
Sbjct: 485 IPPGPGSRWEFAVLLCLGGGCTMAIFLXTGMVLVRQF-RKYQLRKVNAKTYGGPDXIISH 543

Query: 416 VEELRMMKKTSHESS-NSDLDSSDQGGYHLY 445
             E++M+K+  +ES+ NSD+DSSDQGGYHLY
Sbjct: 544 AGEMQMIKRHGYESTCNSDVDSSDQGGYHLY 574

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743226|emb|CBI36093.3| unnamed protein product [Vitis vinifera]

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 182/440 (41%), Positives = 256/440 (58%), Gaps = 27/440 (6%)

Query: 2   HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRT 61
           H+AD+V+++LE   +FA K D  G + LH +C   +LEI + LL+LDP L+   DN   T
Sbjct: 141 HIADVVRKILEVCPDFAPKTDKKGFSALHYACCGDNLEIVKMLLRLDPGLAMKFDNSRCT 200

Query: 62  PLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKL 121
           PLH AA+KG+  +++E L++   S +  T  GETV HL V+ NQY A   L +    T L
Sbjct: 201 PLHLAAMKGKGAVLEEFLAIVPTSFQFLTSEGETVFHLIVRFNQYSAFVCLAQVFGDTLL 260

Query: 122 ANMPDNDGNTILHLATAGKLTTMVIYLL-KLGVDVNAINRKGYTALDVVESDASNSGALQ 180
              PD +GNTILHLA +     +  Y++ K GV++N  N +G T LD++    S S  + 
Sbjct: 261 FQRPDRNGNTILHLAVSAWRHRLADYIINKTGVEINFRNSRGQTVLDILNQAGSTSKNMH 320

Query: 181 IVPALEEAGARRCDQLPPMSPHDIQPIGDTSPISAQSSIPRRAPRESPSRHHRRRNRRRR 240
           +   +++AG +R  +L                  +   + +R  R+    H  R+NR   
Sbjct: 321 LEDMIKKAGGKRSIEL------------------SHKHLSQRHRRDLLELHQIRQNR--- 359

Query: 241 EKQIELQTEGLRNARKTIIIVAVLIATVTFAAGINPPGGFNQ---VSGKSLVGKQTSFKV 297
             Q E+  E L+NAR TII+VA+LIATVTF AGI+PPGG  Q   + GKS VG+  +FK+
Sbjct: 360 --QNEIYKEALQNARNTIILVAILIATVTFTAGISPPGGVYQDGPLKGKSTVGRTIAFKI 417

Query: 298 FMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTIL 357
           FM+ N +ALF SL IVI LVSIIPFQRKS+++LLVV H+VMW++VSF+A AY+AA W I+
Sbjct: 418 FMISNNIALFSSLCIVIVLVSIIPFQRKSLVRLLVVAHKVMWVAVSFMATAYVAATWVII 477

Query: 358 PRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWRKMKEKNRSPNSSISRVE 417
           P  RG  W    ++SL  G   ++F  LGV L RH L K + R+ K         I    
Sbjct: 478 PHDRGTKWTLELLLSLSIGTVGSVFVYLGVKLVRHRLTKLKTRREKHTKSKGMKQIEEAV 537

Query: 418 ELRMMKKTSHESSNSDLDSS 437
                +    +SS SD+DS+
Sbjct: 538 PAADKRNNITQSSYSDVDSA 557

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059128|ref|XP_002299729.1| predicted protein [Populus trichocarpa] gi|222846987|gb|EEE84534.1| predicted protein [Populus trichocarpa]

 Score =  297 bits (760), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 178/408 (43%), Positives = 240/408 (58%), Gaps = 24/408 (5%)

Query: 5   DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLH 64
           +IVK +L A    A K D +G  PLH +C  GHLEIT+ LL+ D DL+ + +N+G  PLH
Sbjct: 135 EIVKMILRACPNMAQKIDSDGCNPLHYACKNGHLEITKLLLRHDLDLTLIYNNKGFKPLH 194

Query: 65  WAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM 124
            AAI G   I++E L++   S +  T  G+ V HL V+ N + A   L      TKL   
Sbjct: 195 LAAIHGNGTILEEFLAMAPTSFDCLTTDGDNVFHLLVRFNAHSAFMCLEHVFGDTKLFQQ 254

Query: 125 PDNDGNTILHLATAGKLTTMVIYLL--KLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
           PD  GNTILH+A +G L  + I ++  +  VD+N  N +G+TALD++    S+     + 
Sbjct: 255 PDQFGNTILHIAISGGLYHVRISVIINERKVDINHQNNRGHTALDILNHAGSSLEIQDLR 314

Query: 183 PALEEAGARRCDQLP----PMSP-------HDIQPIGDTSPISAQSSIPRRAPRESPSRH 231
             L++AG +    L       SP        D+Q    +SP   +S I R+   +   RH
Sbjct: 315 DMLKKAGGKLGTGLSWSQKSESPRDALEREFDLQLQLGSSPYRHESIIRRKKLMKVHKRH 374

Query: 232 HRRRNRRRREKQIELQTEGLRNARKTIIIVAVLIATVTFAAGINPPGGFNQ---VSGKSL 288
           HR        KQ +  TE L+NAR T+ +VA++IATVTF AGINPPGG  Q   + GKS 
Sbjct: 375 HR--------KQHKAYTEALQNARNTLTVVAIMIATVTFTAGINPPGGVYQEGPLKGKST 426

Query: 289 VGKQTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAA 348
            G+ ++FKVF + N +ALF SL IVI LVSIIPFQRK +M+LLVV H+ MW++VSF+AAA
Sbjct: 427 AGRTSAFKVFSITNNIALFTSLCIVIALVSIIPFQRKPLMKLLVVAHKGMWVAVSFMAAA 486

Query: 349 YIAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRK 396
           YIAAIW I+P   G VW   A++S+  G   + F  LGV L  H LRK
Sbjct: 487 YIAAIWVIMPESHGNVWTFEALISIFAGTLGSAFIYLGVKLVGHHLRK 534

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	445
TAIR|locus:2012873	578	AT1G10340 "AT1G10340" [Arabido	0.346	0.266	0.484	2.7e-53
TAIR|locus:2046628	601	AT2G24600 "AT2G24600" [Arabido	0.878	0.650	0.320	1.2e-49
TAIR|locus:2170081	535	AT5G50140 "AT5G50140" [Arabido	0.395	0.328	0.383	1.6e-42
TAIR|locus:2157553	598	AT5G54710 "AT5G54710" [Arabido	0.892	0.663	0.281	6.6e-42
TAIR|locus:2009046	573	AT1G34050 "AT1G34050" [Arabido	0.361	0.280	0.353	1.3e-41
TAIR|locus:2157548	480	AT5G54700 "AT5G54700" [Arabido	0.316	0.293	0.406	3.3e-33
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.878	0.720	0.264	1.9e-32
TAIR|locus:2045233	662	AT2G31820 [Arabidopsis thalian	0.889	0.598	0.245	5.6e-31
TAIR|locus:2031948	627	AT1G05640 "AT1G05640" [Arabido	0.892	0.633	0.252	4.4e-30
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.874	0.659	0.251	7.2e-29

TAIR|locus:2012873 AT1G10340 "AT1G10340" [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 2.7e-53, Sum P(2) = 2.7e-53
 Identities = 76/157 (48%), Positives = 97/157 (61%)

Query:   243 QIELQTEGLRNARKXXXXXXXXXXXXXXXXGINPPGGFNQVS---GKSLVGKQTSFKVFM 299
             + ++  E L+NAR                 GINPPGG  Q     GKSLVGK T+FKVF 
Sbjct:   393 EYQMHIEALQNARNTIAIVAVLIASVAYAGGINPPGGVYQDGPWRGKSLVGKTTAFKVFA 452

Query:   300 VCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPR 359
             +CN +ALF SLGIVI LVSIIP++RK + +LLV THR+MW+SV F+A AYIAA W  +P 
Sbjct:   453 ICNNIALFTSLGIVILLVSIIPYKRKPLKRLLVATHRMMWVSVGFMATAYIAASWVTIPH 512

Query:   360 GRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRK 396
               G  W+  A+V++ GG    +F  LGV    HW +K
Sbjct:   513 YHGTQWLFPAIVAVAGGALTVLFFYLGVETIGHWFKK 549

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2046628 AT2G24600 "AT2G24600" [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 130/405 (32%), Positives = 196/405 (48%)

Query:     3 VADIVKELLEARQEFAWK-KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRT 61
             V  I++   E  ++ AW+ +D +  T LH +C KG LE+T               ++G +
Sbjct:   148 VGIILERFPELARKNAWEVEDGSRSTLLHYACDKGDLELTSILLGLNQGLEEALNSKGLS 207

Query:    62 PLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITK- 120
             PLH A  +G + I++E +  +  S  +RT   ETV HL  +N   +A  ++ E L  +  
Sbjct:   208 PLHLAVQRGSVIILEEFMDKSPLSFCVRTPSKETVFHLAARNKNTDAFVFMAENLGTSSP 267

Query:   121 -LANMPDNDGNTILHLATAGKLTTMVI-YLL-KLGVDVNAINRKGYTALDVVESDASNSG 177
              L    D  GNT+LH+A +    + +I Y++ K  +D+   N  GY A  ++   A +  
Sbjct:   268 ILLKKKDQQGNTVLHIAASVSCGSPLIRYIVGKKIIDIRDRNNMGYRAYHLLPRQAQD-- 325

Query:   178 ALQIVPALEEAGARRCDQLPPMSPHDIQP-IGDTSPISAQSSIPXXXXXXXXXXXXXXXX 236
               + + +      +  +++        +P IG +  I     I                 
Sbjct:   326 -YEFISSYLRCDTKTSEEVDSKKAERNEPHIGHSEVIRLLKLIEISTSEIAERKKSKKHH 384

Query:   237 XXXXXKQIE--LQTEGLRNARKXXXXXXXXXXXXXXXXGINPPGGFNQVS---GKSLVGK 291
                  K +E  +  E L+NAR                 GINPPGG  Q     GKSLVG 
Sbjct:   385 VKRGHKSLEHEMHIEALQNARNTIAIVAVLIASVSYAGGINPPGGVYQDGPWKGKSLVGN 444

Query:   292 QTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIA 351
               +FKVF +CN +ALF SL IVI LVSIIP+QRK + +LLV THR+MW+SV F+A AY+A
Sbjct:   445 TAAFKVFAICNNIALFTSLCIVILLVSIIPYQRKPLKKLLVATHRMMWVSVGFMATAYVA 504

Query:   352 AIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRK 396
             A    +P   G  W+   ++S+ GG    +F+ LGV    HW +K
Sbjct:   505 ASLVTIPHFPGTRWLFPVIISVAGGSLTVLFSYLGVETISHWFKK 549

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2170081 AT5G50140 "AT5G50140" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 1.6e-42, Sum P(2) = 1.6e-42
 Identities = 69/180 (38%), Positives = 98/180 (54%)

Query:   242 KQIELQTEGLRNARKXXXXXXXXXXXXXXXXGINPPGGFNQVS---GKSLVGKQTSFKVF 298
             K+ E+Q+E L+NAR                 G+NPPGG  Q     GK+  G   +FKVF
Sbjct:   351 KEKEMQSEALQNARNTITVVAVLIASVTFTCGLNPPGGVYQDGHFIGKATAGGTVAFKVF 410

Query:   299 MVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILP 358
              V N +ALF SL IVI L+SIIPF+ KS+   L++TH+++WL+V  +A+AY+A     LP
Sbjct:   411 SVSNSIALFTSLCIVILLLSIIPFRTKSLKTFLIITHKMIWLAVIAMASAYVAGTCVTLP 470

Query:   359 RGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWRK-MKEKNRSPNSSISRVE 417
               RG  WV  A + +       +F  L   LA H  RK + RK M  +  + N + + V+
Sbjct:   471 HSRGNKWVLKATLVIACVMLGGMFIFLWFKLANHMSRKKKMRKNMMSRIETLNKAAAFVD 530

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2157553 AT5G54710 "AT5G54710" [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 118/419 (28%), Positives = 204/419 (48%)

Query:     6 IVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXX--NEGRTPL 63
             I+  +LE         D    T LH +C  G+LE+ R                 +G TPL
Sbjct:   178 IIDSILEKFPNLILDADEEQSTLLHKACKSGNLEMARTLLDVDVNQEIAEKVDKDGLTPL 237

Query:    64 HWAAIKGRINIIDEILSLNLQSAEMRTIHG--ETVLHLTVKNNQYEAVKYLMETLNITKL 121
             H A I G + I+ E L     S  + T  G  ETV HL  K  + +A  ++ ++ NI +L
Sbjct:   238 HRAVINGSVEILKEFLCKAPSSFNITT-QGTIETVFHLAAKYQKTKAFIFMAQSANIRQL 296

Query:   122 ANMPDNDGNTILHLATAGKLTTMVIYLL-KLGVDVNAINRKGYTALDVVESDASNSGALQ 180
                 D + NT+LH+A +   T++V ++L +  +DV   N+KG+ A+D+++ +  +   L 
Sbjct:   297 LYSLDAEDNTVLHVAASVDSTSLVRHILSETTIDVTLKNKKGFAAVDLIDKEGVDFPLLS 356

Query:   181 IVPALEEAGARRCDQLPPMSPHDIQPIGDTSPISAQSSIPXXXXXXXXXXXXXXXXXXXX 240
             +    E    +R  +    +   ++ I +T+     SS                      
Sbjct:   357 LWFRDEAEKIQRPARYVKFAHEPVELIRNTNNGEKLSS-------ESRAMDLLREGRDPR 409

Query:   241 XKQIELQTEGLRNARKXXXXXXXXXXXXXXXXGINPPGGFNQVS---GKSLVGKQTSFKV 297
              K+ E+ +E L+NAR                 GINPPGG +Q     GK+  G+  +FK+
Sbjct:   410 NKEREMHSESLQNARNTITIVAVLIASVAFTCGINPPGGVHQDGPFIGKATAGRTLAFKI 469

Query:   298 FMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTIL 357
             F V N +ALF SL IV  LVSII ++ K++   +V+ H++MWL+V+ +A AY A+ W  +
Sbjct:   470 FSVANNIALFTSLSIVTLLVSIISYRTKALKMCVVIAHKMMWLAVASMATAYAASAWITV 529

Query:   358 PRGRGMVWV---SAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWRKMKEKNRSPNSSI 413
             P   G  W+   ++A+ S+  G   ++F  +  ++ +H L+K + R+ +   ++P++++
Sbjct:   530 PHNEGSKWLVYTTSAIASVALG---SMFVYVSFMMVKHILKKDKLRRNQSHGKTPSTTL 585

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009046 AT1G34050 "AT1G34050" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 1.3e-41, Sum P(2) = 1.3e-41
 Identities = 58/164 (35%), Positives = 89/164 (54%)

Query:   242 KQIELQTEGLRNARKXXXXXXXXXXXXXXXXGINPPGGFNQ---VSGKSLVGKQTSFKVF 298
             ++ ++  E L NAR                 GINPPGG  Q     GKS  G+  +F+VF
Sbjct:   383 RESKMHAEALLNARNTITIVAVLIASVAFTCGINPPGGVYQEGPYKGKSTAGRTLAFQVF 442

Query:   299 MVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILP 358
              + N +ALF SL IVI LVSIIP++ + +   L +THR++W++V+ +A AY++A   I+P
Sbjct:   443 SISNNIALFTSLCIVILLVSIIPYRTRPLKNFLKLTHRILWVAVASMALAYVSAASIIIP 502

Query:   359 RGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWRKM 402
                G  W+   V+S+       +F  +   + RHWL+K  +  M
Sbjct:   503 HVEGKRWLFTTVLSISTLMLGGLFAFMTYKVIRHWLKKMTFNPM 546

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2157548 AT5G54700 "AT5G54700" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 3.3e-33, Sum P(2) = 3.3e-33
 Identities = 61/150 (40%), Positives = 83/150 (55%)

Query:   246 LQTEGLRNARKXXXXXXXXXXXXXXXXGINPPGGFNQVS----GKSLVGKQTSFKVFMVC 301
             + +E L+NAR                 G+NPPGG  Q S    GKS+  K  +FK+F V 
Sbjct:   205 MHSEALQNARNTITVVAILIASVTFAVGMNPPGGIYQESTSSKGKSVAAKTVAFKIFYVS 264

Query:   302 NIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGR 361
             N +ALF SL IVI LVSIIPF+ KS+  +LV+TH++M +SV+ LA +Y+A  W ILP   
Sbjct:   265 NSIALFTSLWIVILLVSIIPFKPKSLKNVLVITHKMMSVSVAALATSYVAVGWIILPHFE 324

Query:   362 GMVWV-----SAAVVSLGGGFTLAIFTGLG 386
             G  W+       ++V  GG +    F   G
Sbjct:   325 GTKWLLYTTLGISIVMRGGRYEAMPFRAGG 354

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 1.9e-32, P = 1.9e-32
 Identities = 112/424 (26%), Positives = 188/424 (44%)

Query:     5 DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLH 64
             D++K L EA  E A   DL+  T LH + ++GH E+                + G+T LH
Sbjct:   115 DVLKVLAEAHSELAMTVDLSNTTALHTAATQGHTEVVNFLLELGSSLAGIAKSNGKTALH 174

Query:    65 WAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM 124
              A+  G + +I  +L+     A      G+T LH+ VK    E V+ L++    +   N+
Sbjct:   175 SASRNGHVKVIKALLASEPAIAIRMDKKGQTALHMAVKGTNVEVVEELIKADRSS--INI 232

Query:   125 PDNDGNTILHLATAGKLTTMVIYLLKLG--VDVNAINRKGYTALDVVESDASNSGALQIV 182
              D  GNT LH+A A K  + ++ LL      D  A+NR G TALD  E   +   AL   
Sbjct:   233 ADTKGNTALHIA-ARKGRSQIVKLLLANNMTDTKAVNRSGETALDTAEKIGNPEVAL--- 288

Query:   183 PALEEAGARRCDQLPPMSPHDIQPIGDTSPISAQSSIPXXXXXXXXXXXXXXXXXXXXXK 242
               L++ G      + P  P+  + +  T      S I                      K
Sbjct:   289 -ILQKHGVPSAKTIKPSGPNPARELKQTV-----SDIKHEVHNQLEHTRLTRKRVQGIAK 342

Query:   243 QI-ELQTEGLRNARKXXXXXXXXXXXXXXXXGINPPGGF----NQV-SGKSL----VGKQ 292
             Q+ ++ TEGL NA                      PG +    +++  G SL    +   
Sbjct:   343 QLNKMHTEGLNNAINSTTVVAVLIATVAFAAIFTVPGQYVEDTSKIPDGHSLGEANIAST 402

Query:   293 TSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAA 352
             T F +F + + +ALF+SL +V+   S++  + K+  Q++ V +++MWL+   ++ A++A 
Sbjct:   403 TPFIIFFIFDSIALFISLAVVVVQTSVVVIESKAKKQMMAVINKLMWLACVLISVAFLAL 462

Query:   353 IWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWL--RKWEWRKMKEKNRSPN 410
              + ++  G    W++  V ++G   T+ I T LG +   +W+   K E   ++   RS  
Sbjct:   463 SFVVV--GEEEKWLAIWVTAIGA--TIMITT-LGTMC--YWIIQHKIEAANLRNIRRSSI 515

Query:   411 SSIS 414
             +SIS
Sbjct:   516 NSIS 519

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2045233 AT2G31820 [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 5.6e-31, P = 5.6e-31
 Identities = 104/423 (24%), Positives = 196/423 (46%)

Query:     5 DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLH 64
             +++K LLE     A   DL+  T LH + ++GH+++                N G+T LH
Sbjct:   238 EVLKILLETFPNLAMTTDLSCTTALHTAATQGHIDVVNLLLETDSNLAKIAKNNGKTALH 297

Query:    65 WAAIKGRINIIDEILSLNLQSAEMRTIH-GETVLHLTVKNNQYEAVKYLMETLNITKLAN 123
              AA  G + ++  ++  +  S   RT   G+T LH+ VK      V  L++  ++  L+ 
Sbjct:   298 SAARMGHVEVVKSLIGKD-PSIGFRTDKKGQTALHMAVKGQNDGIVVELVKP-DVAVLS- 354

Query:   124 MPDNDGNTILHLAT-AGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
             + DN GNT LH+AT  G++  +   +   G+++N IN+ G T LDV E      G  ++V
Sbjct:   355 VEDNKGNTPLHIATNKGRIKIVRCLVSFEGINLNPINKAGDTPLDVSEK----IGNAELV 410

Query:   183 PALEEAGARRCDQL-PPMSPHDIQPIGDTSPISAQSSIPXXXXXXXXXXXXXXXXXXXXX 241
               L+EAGA     L  P +P   + +  T      S I                      
Sbjct:   411 SVLKEAGAATAKDLGKPQNP--AKQLKQTV-----SDIKHEVQSQLQQSRQTGVRVQKIA 463

Query:   242 KQIE-LQTEGLRNARKXXXXXXXXXXXXXXXXGINPPGGFNQ------VSGKSLVGKQTS 294
             K+++ L   GL NA                      PG + +      + G++ +  +  
Sbjct:   464 KRLKKLHISGLNNAINSATVVAVLIATVAFAAIFTIPGQYEEDRSKGELLGQAHIANKAP 523

Query:   295 FKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIW 354
             F VF + + +ALF+SL +V+   S++  ++K+  +L+ V +++MW +  F++ A+++  +
Sbjct:   524 FLVFFIFDSLALFISLAVVVVQTSVVVIEQKAKKKLVFVINKLMWCACLFISIAFVSLSY 583

Query:   355 TILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWRKM-KEKNRSPNSSI 413
              ++  G+  +W++     +GG   L     +   +  H + + + R + KE+++S + S+
Sbjct:   584 IVV--GKEEMWLAVCATVIGGTIMLTTIGAMCYCVVMHRMEESKLRSIRKERSKSQSFSM 641

Query:   414 SRV 416
             SR+
Sbjct:   642 SRM 644

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2031948 AT1G05640 "AT1G05640" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 4.4e-30, P = 4.4e-30
 Identities = 108/428 (25%), Positives = 196/428 (45%)

Query:     2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRT 61
             H+ + +K+LLE     A   DL+  T LH + S+GH ++                N G+T
Sbjct:   200 HI-EALKKLLETFPNLAMTVDLSCTTALHTAASQGHTDVVNLLLKTDSHLAKIAKNNGKT 258

Query:    62 PLHWAAIKGRINIIDEILSLNLQSAEMRTIH-GETVLHLTVKNNQYEAVKYLMETLNITK 120
              LH AA  G   ++  ++  N  S   RT   G+T LH+ VK  Q E +  ++E +    
Sbjct:   259 ALHSAARMGHREVVKSLIG-NDASIGFRTDKKGQTALHMAVKG-QNEGI--VLELVKPDP 314

Query:   121 -LANMPDNDGNTILHLATAGKLTTMVIYLLKL-GVDVNAINRKGYTALDVVESDASNSGA 178
              + ++ D+ GNT LH AT      +V  L+   G+++NA+N+ G TALD+ E      G 
Sbjct:   315 AILSVEDSKGNTPLHTATNKGRIKIVRCLVSFDGINLNAMNKAGDTALDIAEK----IGN 370

Query:   179 LQIVPALEEAGARRCDQL-PPMSPHDIQPIGDTSPISAQSSIPXXXXXXXXXXXXXXXXX 237
              ++V  L+EAGA     L  P +P   + +  T      S I                  
Sbjct:   371 PELVSVLKEAGAATAKDLGKPRNP--AKQLNQTV-----SDIKHEVQSQLQQSRQTGVRV 423

Query:   238 XXXXKQIE-LQTEGLRNARKXXXXXXXXXXXXXXXXGINPPGGFNQ--VSGKSLVGK--- 291
                 K+++ L   GL NA                      PG + +    G  L+G+   
Sbjct:   424 RRIAKRLKKLHINGLNNAINSATVVAVLIATVAFAAIFTIPGQYEEDRTKGLLLLGEARI 483

Query:   292 --QTSFKVFMVCNIVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAY 349
               +  F VF + + +ALF+SL +V+   S++  ++K+   L+ V +++MWL+  F++ A+
Sbjct:   484 AGKAPFLVFFIFDSLALFISLAVVVVQTSVVVIEQKAKKNLVFVINKLMWLACLFISVAF 543

Query:   350 IAAIWTILPRGRGMVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWRKM-KEKNRS 408
             ++  + ++  G+  +W++     +GG   L     +   +  H + + + + + KE+++S
Sbjct:   544 VSLSFIVV--GKEDIWLAICATIIGGTIMLTTIGAMCYCVVMHRIEESKLKSLRKERSKS 601

Query:   409 PNSSISRV 416
              + S+S +
Sbjct:   602 KSFSLSHM 609

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 7.2e-29, P = 7.2e-29
 Identities = 103/409 (25%), Positives = 177/409 (43%)

Query:     6 IVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHW 65
             IV+ LL+     +     +  TPL  +  +GH E+  +             +  +  LH 
Sbjct:   179 IVEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHL 238

Query:    66 AAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMP 125
             AA +G + +I  +LS + Q A      G+T LH+ VK    E VK L++      +   P
Sbjct:   239 AARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDA--DPAIVMQP 296

Query:   126 DNDGNTILHLATAGKLTTMVIYLLKL-GVDVNAINRKGYTALDVVESDASNSGALQIVPA 184
             D   NT LH+AT  K   +V  LL L   + N + R   TALD+ E    +  +  I   
Sbjct:   297 DKSCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSEESSYIKEC 356

Query:   185 LEEAGARRCDQLPPMSPHDIQPIGDTSPISAQSSIPXXXXXXXXXXXXXXXXXXXXXKQI 244
             L  +GA R ++L        QP  +    S  + I                      K++
Sbjct:   357 LARSGALRANELN-------QPRDELR--STVTQIKNDVHIQLEQTKRTNKNVHNISKEL 407

Query:   245 -ELQTEGLRNARKXXXXXXXXXXXXXXXXGINPPGGFNQVSGKSLVGKQTSFKVFMVCNI 303
              +L  EG+ NA                      PGG N   G ++V  + SFK+F + N 
Sbjct:   408 RKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNN-DGSAVVVGRASFKIFFIFNA 466

Query:   304 VALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTILPRGRGM 363
             +ALF SL +V+  ++++  + K+  +++ V +++MWL+    + A++A+ + ++  GR  
Sbjct:   467 LALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVV--GRKN 524

Query:   364 VWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWRKMKEKNRSPNSS 412
              W +  V  +GG     I  G+   +  + ++    R M++K +S   S
Sbjct:   525 EWAAELVTVVGG----VIMAGVLGTMTYYVVKSKRTRSMRKKVKSARRS 569

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032438001 SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (593 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	445
pfam13962	114	pfam13962, PGG, Domain of unknown function	4e-35
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-29
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-16
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-14
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	9e-11
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	7e-10
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	4e-07
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	7e-07
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	9e-07
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	3e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	5e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	8e-06
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	9e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	7e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-04
smart00248	30	smart00248, ANK, ankyrin repeats	5e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.002
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.003
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.003

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  126 bits (318), Expect = 4e-35
 Identities = 45/114 (39%), Positives = 63/114 (55%), Gaps = 7/114 (6%)

Query: 249 EGLRNARKTIIIVAVLIATVTFAAGINPPGGFNQVSGKS------LVGKQTSFKVFMVCN 302
           E L   R ++++VA LIATVTFAAG  PPGG+ Q  G        L GK   FK F V N
Sbjct: 2   EWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVSN 61

Query: 303 IVALFLSLGIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTI 356
            +A   SL  VI L+ I+P   + + +LL +   ++WLS+  L  A+ A  + +
Sbjct: 62  TIAFVASLVAVILLLYIVPSFSRRLPRLLAL-LTLLWLSLLSLMVAFAAGSYRV 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  109 bits (275), Expect = 6e-29
 Identities = 51/129 (39%), Positives = 66/129 (51%), Gaps = 5/129 (3%)

Query: 21  KDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILS 80
           +D +G TPLHL+ S GHLE+ + LL+   D+ +  DN+GRTPLH AA  G + I+  +L 
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 81  LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGK 140
                   R   G T LHL  +N   + VK L   L      N  D DG T LHLA    
Sbjct: 62  -KGADVNARDKDGNTPLHLAARNGNLDVVKLL---LKHGADVNARDKDGRTPLHLAAKNG 117

Query: 141 LTTMVIYLL 149
              +V  LL
Sbjct: 118 HLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 74.0 bits (182), Expect = 5e-16
 Identities = 40/108 (37%), Positives = 51/108 (47%), Gaps = 7/108 (6%)

Query: 88  MRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIY 147
            R   G T LHL   N   E VK L+E        N  DNDG T LHLA       +V  
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADV---NAKDNDGRTPLHLAAKNGHLEIVKL 58

Query: 148 LLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQ 195
           LL+ G DVNA ++ G T L +    A+ +G L +V  L + GA    +
Sbjct: 59  LLEKGADVNARDKDGNTPLHL----AARNGNLDVVKLLLKHGADVNAR 102

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 70.1 bits (172), Expect = 1e-14
 Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 8/85 (9%)

Query: 1   MHVA------DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSL 54
           +H+A      +IVK LLE        +D +G+TPLHL+   G+L++ + LLK   D+ + 
Sbjct: 44  LHLAAKNGHLEIVKLLLEKG-ADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADV-NA 101

Query: 55  PDNEGRTPLHWAAIKGRINIIDEIL 79
            D +GRTPLH AA  G + ++  +L
Sbjct: 102 RDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 72.2 bits (176), Expect = 2e-14
 Identities = 55/175 (31%), Positives = 77/175 (44%), Gaps = 12/175 (6%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 79
            K LN +  L L  +    E    L  +     +  D +GR PLH AA KG   I+  +L
Sbjct: 36  DKKLNLYLELALLPAASLSE--LLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLL 93

Query: 80  SLNLQSAEMRTIHGETVLHLTVKNNQ-----YEAVKYLMETLNITKLANMPDNDGNTILH 134
           +        +   G+T LHL   N        E  K L+E      + N+ D DGNT LH
Sbjct: 94  ASGA-DVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLH 152

Query: 135 LATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAG 189
            A       +V  LL+ G D N+ N  G TALD     A+ +G +++V  L + G
Sbjct: 153 WAALNGDADIVELLLEAGADPNSRNSYGVTALD----PAAKNGRIELVKLLLDKG 203

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 67.3 bits (165), Expect = 4e-14
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 8/88 (9%)

Query: 29  LHLSCSKGHLEITRELLKLDPDLSSLPDNEGRT--PLHWAAIKGRINIIDEILSLNLQSA 86
           LHL+   G+LE+ + LL+   D+     N G T   LH AA  G + I+  +L       
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV-----NLGDTDTALHLAARNGNLEIVKLLLEHG-ADV 54

Query: 87  EMRTIHGETVLHLTVKNNQYEAVKYLME 114
             +   G T LHL  +N   E VK L+E
Sbjct: 55  NAKDKDGNTALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 65.7 bits (161), Expect = 2e-13
 Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 63  LHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA 122
           LH AA  G + ++  +L      A++     +T LHL  +N   E VK L   L      
Sbjct: 1   LHLAAKNGNLELVKLLLEKG---ADVNLGDTDTALHLAARNGNLEIVKLL---LEHGADV 54

Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAIN 159
           N  D DGNT LHLA       +V  LL+ G D+N  +
Sbjct: 55  NAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 65.7 bits (161), Expect = 2e-13
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 5  DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLH 64
          ++VK LLE   +          T LHL+   G+LEI + LL+   D+++  D +G T LH
Sbjct: 11 ELVKLLLEKGADVNLGDT---DTALHLAARNGNLEIVKLLLEHGADVNA-KDKDGNTALH 66

Query: 65 WAAIKGRINIIDEILS 80
           AA  G + I+  +L 
Sbjct: 67 LAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 58.0 bits (141), Expect = 9e-11
 Identities = 39/94 (41%), Positives = 51/94 (54%), Gaps = 9/94 (9%)

Query: 97  LHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVN 156
           LHL  KN   E VK L+E     K A++   D +T LHLA       +V  LL+ G DVN
Sbjct: 1   LHLAAKNGNLELVKLLLE-----KGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVN 55

Query: 157 AINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
           A ++ G TAL +    A+ +G L+IV  L E GA
Sbjct: 56  AKDKDGNTALHL----AARNGNLEIVKLLLEHGA 85

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 58.7 bits (141), Expect = 7e-10
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 9/127 (7%)

Query: 4   ADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHL-----EITRELLKL--DPDLSSLPD 56
             IVK LL +  +    KD +G TPLHL+   G+      E+ + LL+   D D+++L D
Sbjct: 86  DKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRD 144

Query: 57  NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL 116
            +G TPLHWAA+ G  +I++ +L         R  +G T L    KN + E VK L++  
Sbjct: 145 EDGNTPLHWAALNGDADIVELLLE-AGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG 203

Query: 117 NITKLAN 123
               L  
Sbjct: 204 LHLSLLK 210

Length = 235

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
           N  D DG T LHLA +     +V  LL+ G DVNA +  G T L +    A+ +G L+IV
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHL----AAKNGHLEIV 56

Query: 183 PALEEAGA 190
             L E GA
Sbjct: 57  KLLLEKGA 64

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 25 GHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINII 75
          G T LH +   G LE+ + LL+   D+ +  D +G T LH AA  G + ++
Sbjct: 1  GRTALHKAAISGRLELVKYLLEKGVDI-NRTDEDGNTALHIAAENGNLEVL 50

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 22/47 (46%), Positives = 27/47 (57%)

Query: 121 LANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALD 167
             N  D +GNT LHLA       +V +LLK GVD+N  +  G TALD
Sbjct: 8   DLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALD 54

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 10 LLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWA 66
          LLE         D NG+TPLHL+   G LE+ + LLK   DL +L D++G T L  A
Sbjct: 1  LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDL-NLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 45/178 (25%), Positives = 72/178 (40%), Gaps = 16/178 (8%)

Query: 20  KKDLNGHTPLH--LSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAA--IKGRINII 75
             DL G TPL   L     ++E+ R L+    D+ ++ D+  R+ LH      K R  I+
Sbjct: 147 ALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAV-DDRFRSLLHHHLQSFKPRARIV 205

Query: 76  DEILSLNLQSAEMRTIHGETVLHLTVKNNQYEA---VKYLMETLNITKLANMPDNDGNTI 132
            E++      A    + G T LH     +  +    +  L+  ++I    N  +  G T 
Sbjct: 206 RELIRAGCDPAA-TDMLGNTPLHSMATGSSCKRSLVLPLLIAGISI----NARNRYGQTP 260

Query: 133 LHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALD---VVESDASNSGALQIVPALEE 187
           LH A           L+ LG D+NA++  G T L       +  +   AL   P+ E 
Sbjct: 261 LHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAET 318

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 51.9 bits (125), Expect = 4e-07
 Identities = 43/144 (29%), Positives = 62/144 (43%), Gaps = 11/144 (7%)

Query: 31  LSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEM-- 88
           L+ S   +E  R LL    D++      G+TPLH         + D +  L    A++  
Sbjct: 20  LNASNVTVEEVRRLLAAGADVN-FRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNA 78

Query: 89  RTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAGKLT--TM 144
               G T LHL + N     V   ++ L I   A  N  D  G T LH+  +G      +
Sbjct: 79  PERCGFTPLHLYLYNATTLDV---IKLL-IKAGADVNAKDKVGRTPLHVYLSGFNINPKV 134

Query: 145 VIYLLKLGVDVNAINRKGYTALDV 168
           +  LL+ G DVNA++  G T L V
Sbjct: 135 IRLLLRKGADVNALDLYGMTPLAV 158

Length = 471

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 49.4 bits (118), Expect = 7e-07
 Identities = 40/182 (21%), Positives = 73/182 (40%), Gaps = 41/182 (22%)

Query: 17  FAWKKDLNG---------------HTPLHLSC---SKGHLEITRELLKLDPDLSSLPDNE 58
           +  K D+ G                TP+  SC    K ++EI + L++   D++    + 
Sbjct: 28  YVEKDDIEGVKKWIKFVNDCNDLYETPIF-SCLEKDKVNVEILKFLIENGADVNFKTRDN 86

Query: 59  GRTPLHWAAIKGRINIIDEILSLNLQS-AEMRTIH--GETVLH--LTVKNNQYEAVKYLM 113
             + LH      + N+  EIL + + S + +      G+ +LH  +   N +   +K L+
Sbjct: 87  NLSALHHYLSFNK-NVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLI 145

Query: 114 ETLNITKLANMP---DNDGNTILH----LATAGKLTTMVIYLLKLGVDVNAINRKGYTAL 166
           +              D D N IL+      +  K+     +L  LG+D+N  N+ GY   
Sbjct: 146 D------SGVSFLNKDFDNNNILYSYILFHSDKKI---FDFLTSLGIDINETNKSGYNCY 196

Query: 167 DV 168
           D+
Sbjct: 197 DL 198

Length = 209

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 51.0 bits (122), Expect = 9e-07
 Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 12/158 (7%)

Query: 4   ADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPL 63
           A +++ELL+A+ +     D  G TPLH++ SKG+ +    LLK   ++  + D  G T L
Sbjct: 538 AALLEELLKAKLD-PDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTAL 595

Query: 64  HWAAIKGRINIIDEILSLNLQSAEMRTIH-GETVLHLTVKNNQYEAVKYLMET-LNITKL 121
            W AI  + + I  IL      A +   H    +L    K N   A+K L++  LN+   
Sbjct: 596 -WNAISAKHHKIFRIL---YHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNV--- 648

Query: 122 ANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAIN 159
            +  D+ G T L +A A     MV  L+  G DV+  N
Sbjct: 649 -DSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKAN 685

Length = 823

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 48/170 (28%), Positives = 72/170 (42%), Gaps = 13/170 (7%)

Query: 4   ADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPL 63
           A+I K LL    +   K    G+T LH +       +T  LL    +++  PD    +PL
Sbjct: 147 AEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNI-PDKTNNSPL 205

Query: 64  HWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKN-NQYEAVKYLME---TLNIT 119
           H  A+K     I  IL  N  S + R   G T LH++V     Y+ +K L+E    +N  
Sbjct: 206 H-HAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAK 264

Query: 120 KLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVV 169
                    G T LH +   +    +  LL+ G D+N++N    T L   
Sbjct: 265 SYIL-----GLTALHSSIKSERKLKL--LLEYGADINSLNSYKLTPLSSA 307

Length = 477

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 46/182 (25%), Positives = 70/182 (38%), Gaps = 32/182 (17%)

Query: 2   HVADIVKELLEARQEFAWKKDLNGHTPLH--LSCSKGHLEITRELLKLDPDLSSLPDNEG 59
            V +IVK LLE         D NG TPL   +S       I   LL    +++   +++G
Sbjct: 84  DVKEIVKLLLEYGANVN-APDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIK-NSDG 141

Query: 60  RTPLHWAAIKGR---------------INIIDEI---LSLNLQSAEMRTIHGETVLHLTV 101
              LH      +               IN  + +   LS  +    ++ ++G T LH  V
Sbjct: 142 ENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGV-PINIKDVYGFTPLHYAV 200

Query: 102 KNNQYEAVKYLME---TLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAI 158
            NN  E VKYL++     N+       +  G+T LH+A       +   LL  G  +  I
Sbjct: 201 YNNNPEFVKYLLDLGANPNLV------NKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTI 254

Query: 159 NR 160
             
Sbjct: 255 IE 256

Length = 422

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 11/137 (8%)

Query: 34  SKGHLEITRELLK--LDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTI 91
           S G+  +  ELLK  LDPD+    D++GRTPLH AA KG  + +  +L  +  +  +R  
Sbjct: 534 STGNAALLEELLKAKLDPDIG---DSKGRTPLHIAASKGYEDCVLVLLK-HACNVHIRDA 589

Query: 92  HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKL 151
           +G T L   +    ++  + L    +I+     P   G+ +   A    LT M   LLK 
Sbjct: 590 NGNTALWNAISAKHHKIFRILYHFASISD----PHAAGDLLCTAAKRNDLTAMK-ELLKQ 644

Query: 152 GVDVNAINRKGYTALDV 168
           G++V++ + +G TAL V
Sbjct: 645 GLNVDSEDHQGATALQV 661

Length = 823

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 46/220 (20%)

Query: 4   ADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGH-----LEITRELLKLDPDLSSLPDNE 58
            D+VK LL+   +       N  TPLH   +  +      EI + LL+   ++++ PDN 
Sbjct: 48  IDVVKILLDNGADIN-SSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNA-PDNN 105

Query: 59  GRTPLHWAAIK--GRINIIDEILSLNLQSAEMR--TIHGETVLHLTVKNNQYEAVKYLME 114
           G TPL +A  K     +I++ +L      A +      GE +LHL +++N+ +       
Sbjct: 106 GITPLLYAISKKSNSYSIVEYLLDNG---ANVNIKNSDGENLLHLYLESNKID------- 155

Query: 115 TLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDAS 174
            L I KL      D N              V YLL  GV +N  +  G+T L      A 
Sbjct: 156 -LKILKLLIDKGVDINAK----------NRVNYLLSYGVPINIKDVYGFTPLH----YAV 200

Query: 175 NSGALQIVPALEEAGARRCDQLPPMSPHDIQPIGDTSPIS 214
            +   + V  L + GA         +P+ +   GDT P+ 
Sbjct: 201 YNNNPEFVKYLLDLGA---------NPNLVNKYGDT-PLH 230

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 21/159 (13%)

Query: 20  KKDLNGHTPLHLSCSKG---HLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIID 76
            KD  G TPLH+    G   + ++ R LL+   D+++L D  G TPL         N+  
Sbjct: 112 AKDKVGRTPLHV-YLSGFNINPKVIRLLLRKGADVNAL-DLYGMTPLAVLLKSRNANV-- 167

Query: 77  EILSLNLQ-SAEMRT--IHGETVLH---LTVKNNQYEAVKYLMETLNITKLANMPDNDGN 130
           E+L L +   A++        ++LH    + K       + + E +         D  GN
Sbjct: 168 ELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRA----RIVRELIRAGCDPAATDMLGN 223

Query: 131 TILHLATAG---KLTTMVIYLLKLGVDVNAINRKGYTAL 166
           T LH    G   K + ++  L+  G+ +NA NR G T L
Sbjct: 224 TPLHSMATGSSCKRSLVLPLLIA-GISINARNRYGQTPL 261

Length = 471

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 48.0 bits (114), Expect = 5e-06
 Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 10/163 (6%)

Query: 5   DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLH 64
           D++K +L+   +    KD    T LH +  KG LE  + L +   D++ + D+ G  P+H
Sbjct: 105 DMIKTILDCGIDVN-IKDAELKTFLHYAIKKGDLESIKMLFEYGADVN-IEDDNGCYPIH 162

Query: 65  WAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME-TLNITKLAN 123
            A      +II ++L      A ++  +GE+ LH   +   Y  +K L++   +I     
Sbjct: 163 IAIKHNFFDII-KLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKC- 220

Query: 124 MPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTAL 166
               +G T LH   A       I LL     +N  +  G T L
Sbjct: 221 ---KNGFTPLH--NAIIHNRSAIELLINNASINDQDIDGSTPL 258

Length = 434

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 43.8 bits (104), Expect = 8e-06
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 7/58 (12%)

Query: 1  MHVA------DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLS 52
          +H+A      +IVK LLE   +    KD +G+T LHL+   G+LEI + LL+   D++
Sbjct: 32 LHLAARNGNLEIVKLLLEHGADVN-AKDKDGNTALHLAARNGNLEIVKLLLEHGADIN 88

Length = 91

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 48.0 bits (114), Expect = 8e-06
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 21  KDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILS 80
           +D +G TPLH++C+ GH+++ R LL+   D + L D +G+TPL  A   G   ++  +  
Sbjct: 111 RDYDGRTPLHIACANGHVQVVRVLLEFGADPTLL-DKDGKTPLELAEENGFREVVQLLSR 169

Length = 664

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 47.3 bits (112), Expect = 9e-06
 Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 12/169 (7%)

Query: 24  NGHTPLHLSCSKGHLEITRELLKLD--PDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL 81
           +G +P+ L+      E  + L+K    PD+   PD    + LH A  +G +  ++E+L L
Sbjct: 34  DGISPIKLAMKFRDSEAIKLLMKHGAIPDVKY-PDI--ESELHDAVEEGDVKAVEELLDL 90

Query: 82  NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKL 141
              + ++    G T LHL     + + +K L+         ++P+ D  + LHLA     
Sbjct: 91  GKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP---DIPNTDKFSPLHLAVMMGD 147

Query: 142 TTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
              +  L+     ++  +  G T L +    A   G + I   L ++GA
Sbjct: 148 IKGIELLIDHKACLDIEDCCGCTPLII----AMAKGDIAICKMLLDSGA 192

Length = 413

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 59  GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 112
           GRT LH AAI GR+ ++  +L   +         G T LH+  +N   E +K L
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINR-TDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 44 LLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHL 99
          LL+  P   +  D  G TPLH AA  G + ++  +L   +    +R   G T L L
Sbjct: 1  LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGV-DLNLRDSDGLTALDL 55

Length = 56

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 18/194 (9%)

Query: 3   VADIVKELLEARQEFAWKKDLNGHTPLHL-SCSKGHLEITRELLKLDPDLSSLPDNEGRT 61
           V DIV+ LLEA  +     +  G TPLHL   +   L++ + L+K   D+++  D  GRT
Sbjct: 62  VKDIVRLLLEAGADVN-APERCGFTPLHLYLYNATTLDVIKLLIKAGADVNA-KDKVGRT 119

Query: 62  PLHWAAIKGRIN--IIDEILSLNLQSAEMRTIHGETVLHLTVKNNQ--YEAVKYLMETLN 117
           PLH       IN  +I  +L           ++G T L + +K+     E ++ L     
Sbjct: 120 PLHVYLSGFNINPKVIRLLLRKGA-DVNALDLYGMTPLAVLLKSRNANVELLRLL----- 173

Query: 118 ITKLANM--PDNDGNTILH--LATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDA 173
           I   A++   D+   ++LH  L +      +V  L++ G D  A +  G T L  + + +
Sbjct: 174 IDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGS 233

Query: 174 SNSGALQIVPALEE 187
           S      ++P L  
Sbjct: 234 S-CKRSLVLPLLIA 246

Length = 471

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 19/110 (17%)

Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
           N  D DG T LH+A A     +V  LL+ G D   +++ G T L++    A  +G  ++V
Sbjct: 109 NCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLEL----AEENGFREVV 164

Query: 183 PAL-------EEAGARRCDQLPPMSPHDIQPIGDTSPISAQ----SSIPR 221
             L        E GA       P S     P  + SPIS+     S++P+
Sbjct: 165 QLLSRHSQCHFELGANA----KPDSFTGKPPSLEDSPISSHHPDFSAVPQ 210

Length = 664

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 43/156 (27%), Positives = 68/156 (43%), Gaps = 29/156 (18%)

Query: 38  LEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVL 97
           L I   LL+   D+++  D    TP+H+AA +G   +++ +LS       +  +   +VL
Sbjct: 158 LLIAEMLLEGGADVNA-KDIYCITPIHYAAERGNAKMVNLLLSYG-ADVNIIALDDLSVL 215

Query: 98  HLTVKNNQYEAVKYLMETL-NITK-------------------------LANMPDNDGNT 131
              V +   + +K +++   NI K                           N  D+  NT
Sbjct: 216 ECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNT 275

Query: 132 ILHLAT-AGKLTTMVIYLLKLGVDVNAINRKGYTAL 166
            LH A+ A  L+ +V  LL+ G DVNA N KG T L
Sbjct: 276 PLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPL 311

Length = 682

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 40.4 bits (95), Expect = 5e-05
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 78  ILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLA 136
           +L            +G T LHL  K    E V++L   L      N+ D+DG T L LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWL---LKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 45.1 bits (106), Expect = 7e-05
 Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 10/137 (7%)

Query: 27  TPLH-LSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQS 85
           TPLH  S    + +I   LL+L  ++++  D   +TP+H+AA++  + II+ +L      
Sbjct: 343 TPLHQASTLDRNKDIVITLLELGANVNA-RDYCDKTPIHYAAVRNNVVIINTLLDYGADI 401

Query: 86  AEMRTIHGETVLHLTV-KNNQYEAVKYLMET-LNITKLANMPDNDGNTILHLATAGKLTT 143
             +    G T LH  +   N Y +VK L++   N+    N  + D +T LH A       
Sbjct: 402 EALSQKIG-TALHFALCGTNPYMSVKTLIDRGANV----NSKNKDLSTPLHYACKKNCKL 456

Query: 144 MVI-YLLKLGVDVNAIN 159
            VI  LL  G DVNAIN
Sbjct: 457 DVIEMLLDNGADVNAIN 473

Length = 682

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 13/28 (46%), Positives = 20/28 (71%)

Query: 24 NGHTPLHLSCSKGHLEITRELLKLDPDL 51
          +G+TPLHL+   GHLE+ + LL+   D+
Sbjct: 1  DGNTPLHLAARNGHLEVVKLLLEAGADV 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 128 DGNTILHLATAGKLTTMVIYLLKLGVDVNAINR 160
           DGNT LHLA       +V  LL+ G DVNA ++
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 42/186 (22%), Positives = 74/186 (39%), Gaps = 31/186 (16%)

Query: 5   DIVKEL--LEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTP 62
            I+K +  ++  + ++    L    PLH +    +L++ + LL    +++  PD+   TP
Sbjct: 15  TILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQ-PDHRDLTP 73

Query: 63  LHWAAIKGRINIIDEILSLNLQ---SAEMRTIH----------GETVLHLTVKNNQYEAV 109
           LH    +     + E++    +      +  I            + +L    KN Q   +
Sbjct: 74  LHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDL 133

Query: 110 KYLMET-------LNITKL-------ANMPD-NDGNTILHLATAGKLTTMVIYLLKLGVD 154
            Y+ +          ITKL        NM D + GNT LH AT  K   +   LL  G +
Sbjct: 134 VYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGAN 193

Query: 155 VNAINR 160
           VN  ++
Sbjct: 194 VNIPDK 199

Length = 477

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.8 bits (86), Expect = 5e-04
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 24 NGHTPLHLSCSKGHLEITRELLKLDPDL 51
          +G TPLHL+   G+LE+ + LL    D+
Sbjct: 1  DGRTPLHLAAENGNLEVVKLLLDKGADI 28

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 24 NGHTPLHLSCSKGHLEITRELLKLDPDL 51
          +G+TPLHL+   G+LE+ + LL+   D+
Sbjct: 1  DGNTPLHLAARNGNLELVKLLLEHGADI 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 34.8 bits (81), Expect = 0.003
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 58 EGRTPLHWAAIKGRINIIDEILS 80
          +G TPLH AA  G + ++  +L 
Sbjct: 1  DGNTPLHLAARNGHLEVVKLLLE 23

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 34.5 bits (80), Expect = 0.003
 Identities = 15/30 (50%), Positives = 18/30 (60%)

Query: 128 DGNTILHLATAGKLTTMVIYLLKLGVDVNA 157
           DGNT LHLA       +V  LL+ G D+NA
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	445
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	99.96
PHA02875	413	ankyrin repeat protein; Provisional	99.95
PHA02791	284	ankyrin-like protein; Provisional	99.95
PF13962	113	PGG: Domain of unknown function	99.95
PHA02875	413	ankyrin repeat protein; Provisional	99.94
PHA02874	434	ankyrin repeat protein; Provisional	99.94
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.94
PHA02878	477	ankyrin repeat protein; Provisional	99.94
KOG0510	929	consensus Ankyrin repeat protein [General function	99.94
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.94
PHA03100	480	ankyrin repeat protein; Provisional	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.94
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.94
PHA02946	446	ankyin-like protein; Provisional	99.93
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.93
PHA02874	434	ankyrin repeat protein; Provisional	99.93
PHA02878	477	ankyrin repeat protein; Provisional	99.93
PHA03100	480	ankyrin repeat protein; Provisional	99.93
PHA02989	494	ankyrin repeat protein; Provisional	99.93
PHA02798	489	ankyrin-like protein; Provisional	99.93
KOG0510	929	consensus Ankyrin repeat protein [General function	99.93
PHA02946	446	ankyin-like protein; Provisional	99.93
PHA02795	437	ankyrin-like protein; Provisional	99.92
PHA03095	471	ankyrin-like protein; Provisional	99.92
PHA03095	471	ankyrin-like protein; Provisional	99.91
PHA02798	489	ankyrin-like protein; Provisional	99.91
PHA02859	209	ankyrin repeat protein; Provisional	99.91
KOG0508	615	consensus Ankyrin repeat protein [General function	99.91
PHA02876	682	ankyrin repeat protein; Provisional	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
PHA02876	682	ankyrin repeat protein; Provisional	99.9
PHA02917	661	ankyrin-like protein; Provisional	99.9
PHA02989	494	ankyrin repeat protein; Provisional	99.9
KOG0514	452	consensus Ankyrin repeat protein [General function	99.88
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.86
KOG0508	615	consensus Ankyrin repeat protein [General function	99.86
PHA02917	661	ankyrin-like protein; Provisional	99.86
PHA02741	169	hypothetical protein; Provisional	99.86
PHA02795	437	ankyrin-like protein; Provisional	99.85
PHA02730	672	ankyrin-like protein; Provisional	99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.84
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.84
PHA02741	169	hypothetical protein; Provisional	99.83
PHA02730	672	ankyrin-like protein; Provisional	99.83
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.83
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.82
PHA02884	300	ankyrin repeat protein; Provisional	99.82
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.82
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.81
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.8
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.8
PHA02743	166	Viral ankyrin protein; Provisional	99.8
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.79
PHA02792	631	ankyrin-like protein; Provisional	99.79
PHA02736	154	Viral ankyrin protein; Provisional	99.78
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.77
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.77
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.77
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.76
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.75
PHA02884	300	ankyrin repeat protein; Provisional	99.75
PHA02792	631	ankyrin-like protein; Provisional	99.74
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.71
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.71
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.69
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.68
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.66
KOG0514	452	consensus Ankyrin repeat protein [General function	99.66
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.66
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.62
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.56
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.53
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.5
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.46
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.44
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.41
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.41
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.39
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.35
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.35
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.33
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.31
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.26
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.25
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.23
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.13
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.74
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.73
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.73
PF13606	30	Ank_3: Ankyrin repeat	98.73
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.72
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.71
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.69
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.57
PF13606	30	Ank_3: Ankyrin repeat	98.54
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.53
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.53
KOG0522	560	consensus Ankyrin repeat protein [General function	98.48
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.36
KOG0522	560	consensus Ankyrin repeat protein [General function	98.33
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.2
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.18
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.17
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.11
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.97
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.96
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.92
KOG0511	516	consensus Ankyrin repeat protein [General function	97.72
KOG2384	223	consensus Major histocompatibility complex protein	97.7
KOG2384	223	consensus Major histocompatibility complex protein	97.68
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.53
KOG0511	516	consensus Ankyrin repeat protein [General function	96.99
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.97
KOG2505	591	consensus Ankyrin repeat protein [General function	96.78
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.28
KOG2505	591	consensus Ankyrin repeat protein [General function	96.27
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	91.44
TIGR01569	154	A_tha_TIGR01569 plant integral membrane protein TI	87.11
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	85.97
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	84.96
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	83.62

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.3e-34  Score=241.03  Aligned_cols=181  Identities=31%  Similarity=0.451  Sum_probs=163.9

Q ss_pred             HHHHHHHHhch-hhhcCCCCCCChHHHHHHHcCCHHHHHHHhh-cCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcC
Q 013339            5 DIVKELLEARQ-EFAWKKDLNGHTPLHLSCSKGHLEITRELLK-LDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLN   82 (445)
Q Consensus         5 d~v~~Ll~~~~-~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~-~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~   82 (445)
                      .-++++++..| .++...|.+|+||||+||+.|+.++|..|++ -+..++. +|..||||||+||..|+.++|+.|+.+.
T Consensus        17 ~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~dd-kDdaGWtPlhia~s~g~~evVk~Ll~r~   95 (226)
T KOG4412|consen   17 FKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDD-KDDAGWTPLHIAASNGNDEVVKELLNRS   95 (226)
T ss_pred             HHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCC-ccccCCchhhhhhhcCcHHHHHHHhcCC
Confidence            45788888888 5666666799999999999999999999995 4555555 7999999999999999999999999996


Q ss_pred             CCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCC
Q 013339           83 LQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKG  162 (445)
Q Consensus        83 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G  162 (445)
                      ..+.+..+..|.||||+|+..|+.+++++|+++   ++.++.+|..|.||||-|+..|..+++++|+..|+.+|..|+.|
T Consensus        96 ~advna~tn~G~T~LHyAagK~r~eIaqlLle~---ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G  172 (226)
T KOG4412|consen   96 GADVNATTNGGQTCLHYAAGKGRLEIAQLLLEK---GALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYG  172 (226)
T ss_pred             CCCcceecCCCcceehhhhcCChhhHHHHHHhc---CCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccC
Confidence            678899999999999999999999999999998   78899999999999999999999999999999999999999999


Q ss_pred             CCHHHHHhhhccccchhcHHHHHHHhcCccc
Q 013339          163 YTALDVVESDASNSGALQIVPALEEAGARRC  193 (445)
Q Consensus       163 ~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~  193 (445)
                      +||||.+    ...++.+....|+++|++..
T Consensus       173 ~TpL~~a----l~e~~~d~a~lLV~~gAd~~  199 (226)
T KOG4412|consen  173 FTPLHHA----LAEGHPDVAVLLVRAGADTD  199 (226)
T ss_pred             ccHHHHH----HhccCchHHHHHHHhcccee
Confidence            9999994    45557889999999998754

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2e-32  Score=229.41  Aligned_cols=163  Identities=31%  Similarity=0.445  Sum_probs=151.2

Q ss_pred             CCHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhc-CCCCCCCCCCCCccHHHHHHHcCCHHHHHHHH
Q 013339            1 MHVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKL-DPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL   79 (445)
Q Consensus         1 ~~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~-~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll   79 (445)
                      |+++++++.|+..-.-..+.+|+.||||||+||..|+.|+|+.|+.+ |++++. .++.|.||||+||..|+.+|+.+|+
T Consensus        48 ~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna-~tn~G~T~LHyAagK~r~eIaqlLl  126 (226)
T KOG4412|consen   48 FGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNA-TTNGGQTCLHYAAGKGRLEIAQLLL  126 (226)
T ss_pred             cCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcce-ecCCCcceehhhhcCChhhHHHHHH
Confidence            58899999999733233357799999999999999999999999999 999977 8999999999999999999999999


Q ss_pred             hcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccc
Q 013339           80 SLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAIN  159 (445)
Q Consensus        80 ~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n  159 (445)
                      +++ ..+..+|..|.||||.|+.-|+.+++++|+..   ++.+|.+|..|+||||.|...++.+....|++.|++++..|
T Consensus       127 e~g-a~i~~kD~~~qtplHRAAavGklkvie~Li~~---~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~ed  202 (226)
T KOG4412|consen  127 EKG-ALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQ---GAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDRED  202 (226)
T ss_pred             hcC-CCCcccccccCchhHHHHhccchhhHHHHHhc---CCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeecc
Confidence            999 89999999999999999999999999999987   68899999999999999988999999999999999999999


Q ss_pred             cCCCCHHHHH
Q 013339          160 RKGYTALDVV  169 (445)
Q Consensus       160 ~~G~Tpl~~a  169 (445)
                      ++| ||+.++
T Consensus       203 ke~-t~~~~a  211 (226)
T KOG4412|consen  203 KEG-TALRIA  211 (226)
T ss_pred             ccC-chHHHH
Confidence            999 998874

>PHA02791 ankyrin-like protein; Provisional

Probab=99.96  E-value=5.3e-28  Score=228.96  Aligned_cols=179  Identities=21%  Similarity=0.225  Sum_probs=143.4

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |+.++++.|++.+.+.+.   .+|+||||+|+..|+.++++.|++.|++++. +|..|+||||+|+..|+.++++.|+++
T Consensus        41 g~~eiv~~Ll~~ga~~n~---~d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~-~d~~G~TpLh~Aa~~g~~eivk~Ll~~  116 (284)
T PHA02791         41 NNVRLVCTLLNAGALKNL---LENEFPLHQAATLEDTKIVKILLFSGMDDSQ-FDDKGNTALYYAVDSGNMQTVKLFVKK  116 (284)
T ss_pred             CCHHHHHHHHHCcCCCcC---CCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            567788888888766542   2467888888888888888888888888766 788888888888888888888888888


Q ss_pred             CCCccccccccC-cchHhHHHHcCCHHHHHHHHHhcCcccccCCCC-CCCCcHHHHHHhCCcHHHHHHHHhcCCCccccc
Q 013339           82 NLQSAEMRTIHG-ETVLHLTVKNNQYEAVKYLMETLNITKLANMPD-NDGNTILHLATAGKLTTMVIYLLKLGVDVNAIN  159 (445)
Q Consensus        82 ~~~~~~~~~~~g-~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d-~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n  159 (445)
                      ++ ..+.++..| .||||+|+..|+.+++++|+++..     +..| ..|.||||+|+..|+.+++++|+++|++++..|
T Consensus       117 ga-din~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~-----~~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d  190 (284)
T PHA02791        117 NW-RLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP-----STFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNN  190 (284)
T ss_pred             CC-CcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCC-----cccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCccc
Confidence            74 445566666 488888888888888888887621     1123 358899999999999999999999999999999


Q ss_pred             cCCCCH-HHHHhhhccccchhcHHHHHHHhcCcccC
Q 013339          160 RKGYTA-LDVVESDASNSGALQIVPALEEAGARRCD  194 (445)
Q Consensus       160 ~~G~Tp-l~~a~~~a~~~~~~~i~~~L~~~ga~~~~  194 (445)
                      ..|.|| ||+    |...++.+++++|+++|++...
T Consensus       191 ~~g~t~~L~~----Aa~~~~~e~v~lLl~~Ga~in~  222 (284)
T PHA02791        191 SLLFIPDIKL----AIDNKDLEMLQALFKYDINIYS  222 (284)
T ss_pred             CCCCChHHHH----HHHcCCHHHHHHHHHCCCCCcc
Confidence            999987 898    6667788899999999988643

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.9e-27  Score=240.04  Aligned_cols=183  Identities=22%  Similarity=0.233  Sum_probs=167.5

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |+.|+++.|++.+.+++ ..+.+|.||||+|+..|+.++++.|+++|++++. .+.+|.||||.|+..|+.++++.|++.
T Consensus        13 g~~~iv~~Ll~~g~~~n-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~   90 (413)
T PHA02875         13 GELDIARRLLDIGINPN-FEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDV-KYPDIESELHDAVEEGDVKAVEELLDL   90 (413)
T ss_pred             CCHHHHHHHHHCCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-cCCCcccHHHHHHHCCCHHHHHHHHHc
Confidence            67899999999998876 6677899999999999999999999999998765 678899999999999999999999999


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccC
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK  161 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~  161 (445)
                      ++......+.+|.||||+|+..|+.+++++|++.   +++++.+|.+|.||||+|+..++.+++++|++.|++++..|..
T Consensus        91 ~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~---gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~  167 (413)
T PHA02875         91 GKFADDVFYKDGMTPLHLATILKKLDIMKLLIAR---GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCC  167 (413)
T ss_pred             CCcccccccCCCCCHHHHHHHhCCHHHHHHHHhC---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC
Confidence            8766666777899999999999999999999998   7788999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhhhccccchhcHHHHHHHhcCccc
Q 013339          162 GYTALDVVESDASNSGALQIVPALEEAGARRC  193 (445)
Q Consensus       162 G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~  193 (445)
                      |.||||+    |...++.+++++|++.|++..
T Consensus       168 g~TpL~~----A~~~g~~eiv~~Ll~~ga~~n  195 (413)
T PHA02875        168 GCTPLII----AMAKGDIAICKMLLDSGANID  195 (413)
T ss_pred             CCCHHHH----HHHcCCHHHHHHHHhCCCCCC
Confidence            9999999    555678889999999998764

>PHA02791 ankyrin-like protein; Provisional

Probab=99.95  E-value=2.9e-27  Score=223.94  Aligned_cols=173  Identities=20%  Similarity=0.213  Sum_probs=152.9

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCc-cHHHHHHHcCCHHHHHHHHh
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGR-TPLHWAAIKGRINIIDEILS   80 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~-TpLh~Aa~~G~~~iv~~Ll~   80 (445)
                      |+.|+++.|++.+.+++ ..|..|+||||+|+..|+.++++.|+++|++++. ++..|+ ||||+|+..|+.+++++|++
T Consensus        72 g~~eiV~lLL~~Gadvn-~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~-~~~~g~~TpL~~Aa~~g~~eivk~LL~  149 (284)
T PHA02791         72 EDTKIVKILLFSGMDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMF-YGKTGWKTSFYHAVMLNDVSIVSYFLS  149 (284)
T ss_pred             CCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc-cCCCCCcHHHHHHHHcCCHHHHHHHHh
Confidence            67899999999988776 7889999999999999999999999999999976 777774 89999999999999999999


Q ss_pred             cCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcH-HHHHHhCCcHHHHHHHHhcCCCccccc
Q 013339           81 LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTI-LHLATAGKLTTMVIYLLKLGVDVNAIN  159 (445)
Q Consensus        81 ~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~-LHlA~~~~~~~iv~~Ll~~g~~~~~~n  159 (445)
                      .++...+.  ..|.||||+|+.+|+.+++++|+++   ++.+|.+|..|.|| ||+|+..++.+++++|+++|++++.+|
T Consensus       150 ~~~~~~d~--~~g~TpLh~Aa~~g~~eiv~lLL~~---gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~  224 (284)
T PHA02791        150 EIPSTFDL--AILLSCIHITIKNGHVDMMILLLDY---MTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVN  224 (284)
T ss_pred             cCCccccc--ccCccHHHHHHHcCCHHHHHHHHHC---CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCc
Confidence            87543221  2589999999999999999999998   77889999999987 999999999999999999999999999


Q ss_pred             cCCCCHHHHHhhhccccchhcHHHHHHHhcCcc
Q 013339          160 RKGYTALDVVESDASNSGALQIVPALEEAGARR  192 (445)
Q Consensus       160 ~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~  192 (445)
                      .+| +++          ++.|++++|++..++.
T Consensus       225 ~~~-~~l----------~~~e~~~~ll~~~~~~  246 (284)
T PHA02791        225 LEN-VLL----------DDAEIAKMIIEKHVEY  246 (284)
T ss_pred             ccC-ccC----------CCHHHHHHHHHhhhhh
Confidence            955 665          4456999999877653

>PF13962 PGG: Domain of unknown function

Probab=99.95  E-value=8e-28  Score=196.54  Aligned_cols=109  Identities=33%  Similarity=0.652  Sum_probs=95.5

Q ss_pred             HHHHHhccchhHHHHHHHHHHhhcccccCCCCcccC---CCcccccCCc-ccchhHhHHHHHHHHHHHHHHHHHhccccc
Q 013339          248 TEGLRNARKTIIIVAVLIATVTFAAGINPPGGFNQV---SGKSLVGKQT-SFKVFMVCNIVALFLSLGIVIFLVSIIPFQ  323 (445)
Q Consensus       248 ~e~lk~t~~s~lvVA~LIATvtFaA~~t~PGG~~~~---~G~~~~~~~~-~F~~F~~~n~~a~~~S~~~~~~~~~~~~~~  323 (445)
                      +||+++++++++|||+|||||||||++|||||+|||   .|+|++.+++ .|++|+++|++||++|+++++++++.+...
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~~~~   80 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGLDDF   80 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            478899999999999999999999999999999886   6999998777 999999999999999999999888544222


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013339          324 RKSMMQLLVVTHRVMWLSVSFLAAAYIAAIWTI  356 (445)
Q Consensus       324 ~~~~~~~l~~~~~~l~~si~~m~~af~~~~~~v  356 (445)
                      .+..++.+.++..+||+++.+|++||++|+|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   81 RRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            345556777888899999999999999999875

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.94  E-value=1.8e-26  Score=233.03  Aligned_cols=183  Identities=22%  Similarity=0.289  Sum_probs=167.2

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      +..|+++.|++.+.... ..+.+|.||||+|+..|+.++++.|++.|++.....+.+|.||||+|+..|+.++++.|++.
T Consensus        46 ~~~~~v~~Ll~~ga~~~-~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~  124 (413)
T PHA02875         46 RDSEAIKLLMKHGAIPD-VKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIAR  124 (413)
T ss_pred             CCHHHHHHHHhCCCCcc-ccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence            67899999999987755 56778999999999999999999999999988776788999999999999999999999999


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccC
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK  161 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~  161 (445)
                      | ..++.++..|.||||+|+..|+.+++++|+++   +..++.+|..|+||||+|+..|+.+++++|++.|++++..+..
T Consensus       125 g-ad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~---g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~  200 (413)
T PHA02875        125 G-ADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH---KACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKN  200 (413)
T ss_pred             C-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCC
Confidence            8 56778889999999999999999999999998   6778999999999999999999999999999999999999988


Q ss_pred             CC-CHHHHHhhhccccchhcHHHHHHHhcCccc
Q 013339          162 GY-TALDVVESDASNSGALQIVPALEEAGARRC  193 (445)
Q Consensus       162 G~-Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~  193 (445)
                      |. ||+++    |...++.+++++|++.|++..
T Consensus       201 ~~~t~l~~----A~~~~~~~iv~~Ll~~gad~n  229 (413)
T PHA02875        201 GCVAALCY----AIENNKIDIVRLFIKRGADCN  229 (413)
T ss_pred             CCchHHHH----HHHcCCHHHHHHHHHCCcCcc
Confidence            75 78888    555677899999999998864

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.94  E-value=3.1e-26  Score=232.61  Aligned_cols=183  Identities=20%  Similarity=0.282  Sum_probs=166.8

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |..|+++.|++.++...+..+.+|.||||.|+..|+.++|++|++.|++++. .+..|.||||.|+..|+.+++++|++.
T Consensus        12 gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~-~~~~~~t~L~~A~~~~~~~iv~~Ll~~   90 (434)
T PHA02874         12 GDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINH-INTKIPHPLLTAIKIGAHDIIKLLIDN   90 (434)
T ss_pred             CCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            5679999999988876667888999999999999999999999999999976 788999999999999999999999987


Q ss_pred             CCC----------------------ccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhC
Q 013339           82 NLQ----------------------SAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAG  139 (445)
Q Consensus        82 ~~~----------------------~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~  139 (445)
                      +..                      ..+.++..|.||||+|+..|+.+++++|++.   +..+|.+|.+|+||||+|+..
T Consensus        91 g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~---gad~n~~d~~g~tpLh~A~~~  167 (434)
T PHA02874         91 GVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEY---GADVNIEDDNGCYPIHIAIKH  167 (434)
T ss_pred             CCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhC---CCCCCCcCCCCCCHHHHHHHC
Confidence            743                      2345678899999999999999999999997   778899999999999999999


Q ss_pred             CcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCcc
Q 013339          140 KLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARR  192 (445)
Q Consensus       140 ~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~  192 (445)
                      ++.+++++|++.|++++..|..|.||||+    +...++.+++++|++.|++.
T Consensus       168 ~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~----A~~~g~~~iv~~Ll~~g~~i  216 (434)
T PHA02874        168 NFFDIIKLLLEKGAYANVKDNNGESPLHN----AAEYGDYACIKLLIDHGNHI  216 (434)
T ss_pred             CcHHHHHHHHHCCCCCCCCCCCCCCHHHH----HHHcCCHHHHHHHHhCCCCC
Confidence            99999999999999999999999999999    55567889999999998764

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.94  E-value=8.9e-27  Score=230.27  Aligned_cols=182  Identities=31%  Similarity=0.438  Sum_probs=163.5

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |-.+-|+.+++.....++..|.+|.|+||+||.+++++++++|+++|++++.+-..-|.||||+||++|+..+++.|+++
T Consensus        55 G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqh  134 (600)
T KOG0509|consen   55 GELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQH  134 (600)
T ss_pred             chHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHc
Confidence            45678999999944444588999999999999999999999999999999986557889999999999999999999999


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccc-c
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAIN-R  160 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n-~  160 (445)
                      | ++++.+|.+|.||||+|+..|+.-.+-||+.+   +.++|.+|.+|.||||+|+.++....+..|++-|+.++..| +
T Consensus       135 G-Adpt~~D~~G~~~lHla~~~~~~~~vayll~~---~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~  210 (600)
T KOG0509|consen  135 G-ADPTLKDKQGLTPLHLAAQFGHTALVAYLLSK---GADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDN  210 (600)
T ss_pred             C-CCCceecCCCCcHHHHHHHhCchHHHHHHHHh---cccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccc
Confidence            9 78899999999999999999999999999998   58899999999999999999999888999999999999998 8


Q ss_pred             CCCCHHHHHhhhccccchhcHHHHHHHhcCc
Q 013339          161 KGYTALDVVESDASNSGALQIVPALEEAGAR  191 (445)
Q Consensus       161 ~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~  191 (445)
                      +|.||||.    +...++...+.++++.|++
T Consensus       211 ~g~TpLHw----a~~~gN~~~v~Ll~~g~~~  237 (600)
T KOG0509|consen  211 HGNTPLHW----AVVGGNLTAVKLLLEGGAD  237 (600)
T ss_pred             cCCchHHH----HHhcCCcceEehhhhcCCc
Confidence            99999999    5566777777755555554

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.94  E-value=5e-26  Score=233.77  Aligned_cols=180  Identities=30%  Similarity=0.375  Sum_probs=140.0

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHH------------------------------------------
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLE------------------------------------------   39 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~------------------------------------------   39 (445)
                      |+.|+|+.|++.+.+++ ..|..|+||||+||..|+.+                                          
T Consensus        48 g~~e~vk~Ll~~gadvn-~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~  126 (477)
T PHA02878         48 RNLDVVKSLLTRGHNVN-QPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYK  126 (477)
T ss_pred             CCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHhCccc
Confidence            56788888888887766 67888888888888766543                                          


Q ss_pred             ----------------------HHHHHhhcCCCCCCCCCCC-CccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcch
Q 013339           40 ----------------------ITRELLKLDPDLSSLPDNE-GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETV   96 (445)
Q Consensus        40 ----------------------iv~~LL~~~~~~~~~~d~~-G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~   96 (445)
                                            +++.|+++|++++. +|.+ |.||||+|+..|+.++++.|++.+ ..++.+|..|.||
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~-~~~~~g~tpLh~A~~~~~~~iv~~Ll~~g-ad~n~~d~~g~tp  204 (477)
T PHA02878        127 NIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINM-KDRHKGNTALHYATENKDQRLTELLLSYG-ANVNIPDKTNNSP  204 (477)
T ss_pred             CcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCc-cCCCCCCCHHHHHHhCCCHHHHHHHHHCC-CCCCCcCCCCCCH
Confidence                                  45555556666655 5666 888888888888888888888887 4567778888888


Q ss_pred             HhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhC-CcHHHHHHHHhcCCCcccccc-CCCCHHHHHhhhcc
Q 013339           97 LHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAG-KLTTMVIYLLKLGVDVNAINR-KGYTALDVVESDAS  174 (445)
Q Consensus        97 Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~-~~~~iv~~Ll~~g~~~~~~n~-~G~Tpl~~a~~~a~  174 (445)
                      ||.|+..|+.+++++|++.   +..+|.+|..|.||||+|+.. ++.+++++|+++|++++..+. .|.||||+|     
T Consensus       205 Lh~A~~~~~~~iv~~Ll~~---ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A-----  276 (477)
T PHA02878        205 LHHAVKHYNKPIVHILLEN---GASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS-----  276 (477)
T ss_pred             HHHHHHhCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH-----
Confidence            8888888888888888876   677888888888888888864 578888888888888888775 788888885     


Q ss_pred             ccchhcHHHHHHHhcCccc
Q 013339          175 NSGALQIVPALEEAGARRC  193 (445)
Q Consensus       175 ~~~~~~i~~~L~~~ga~~~  193 (445)
                       .++.+++++|++.|++..
T Consensus       277 -~~~~~~v~~Ll~~gadin  294 (477)
T PHA02878        277 -IKSERKLKLLLEYGADIN  294 (477)
T ss_pred             -ccCHHHHHHHHHCCCCCC
Confidence             234567888888887654

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=8.2e-25  Score=220.32  Aligned_cols=184  Identities=28%  Similarity=0.364  Sum_probs=154.1

Q ss_pred             CHHHHHHHHHHhc-----hhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCC--------------CCCCCCCccH
Q 013339            2 HVADIVKELLEAR-----QEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLS--------------SLPDNEGRTP   62 (445)
Q Consensus         2 ~~~d~v~~Ll~~~-----~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~--------------~~~d~~G~Tp   62 (445)
                      |..|+.+.++.++     ..+ +..|..|.||||.|+..|++++++.+|+.+....              ...|++|.||
T Consensus       198 ~s~e~mEi~l~~~g~~r~~~i-n~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tp  276 (929)
T KOG0510|consen  198 GSKECMEIFLPEHGYERQTHI-NFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTP  276 (929)
T ss_pred             cchhhhhhhhccccchhhccc-ccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCch
Confidence            3456667777622     222 3567788899999999999999999998765432              2258899999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcH
Q 013339           63 LHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLT  142 (445)
Q Consensus        63 Lh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~  142 (445)
                      ||+||+.|+.++++.|+..| .+++.++.+++||||.||.+|+.+.|+.|++ -....+.|..|..|.||||+|+..|+.
T Consensus       277 LH~a~r~G~~~svd~Ll~~G-a~I~~kn~d~~spLH~AA~yg~~ntv~rLL~-~~~~rllne~D~~g~tpLHlaa~~gH~  354 (929)
T KOG0510|consen  277 LHYAARQGGPESVDNLLGFG-ASINSKNKDEESPLHFAAIYGRINTVERLLQ-ESDTRLLNESDLHGMTPLHLAAKSGHD  354 (929)
T ss_pred             HHHHHHcCChhHHHHHHHcC-CcccccCCCCCCchHHHHHcccHHHHHHHHh-CcCccccccccccCCCchhhhhhcCHH
Confidence            99999999999999999998 7888999999999999999999999999998 334568899999999999999999999


Q ss_pred             HHHHHHHhcCCCcc---ccccCCCCHHHHHhhhccccchhcHHHHHHHhcCcc
Q 013339          143 TMVIYLLKLGVDVN---AINRKGYTALDVVESDASNSGALQIVPALEEAGARR  192 (445)
Q Consensus       143 ~iv~~Ll~~g~~~~---~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~  192 (445)
                      .+++.|++.|+...   ..|.+|.||||.    |...++..+++.|+.+|++.
T Consensus       355 ~v~qlLl~~GA~~~~~~e~D~dg~TaLH~----Aa~~g~~~av~~Li~~Ga~I  403 (929)
T KOG0510|consen  355 RVVQLLLNKGALFLNMSEADSDGNTALHL----AAKYGNTSAVQKLISHGADI  403 (929)
T ss_pred             HHHHHHHhcChhhhcccccccCCchhhhH----HHHhccHHHHHHHHHcCCce
Confidence            99999999999877   458999999999    67778888999999999976

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.94  E-value=5.4e-26  Score=237.73  Aligned_cols=186  Identities=22%  Similarity=0.261  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHhc-hhhhcCCCCCCChHHHHHHH--cCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCC--HHHHHH
Q 013339            3 VADIVKELLEAR-QEFAWKKDLNGHTPLHLSCS--KGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGR--INIIDE   77 (445)
Q Consensus         3 ~~d~v~~Ll~~~-~~~~~~~d~~G~TpLH~Aa~--~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~--~~iv~~   77 (445)
                      ..|+++.|++.+ .+++...|..|.||||+|+.  .++.+++++|+++|++++. +|.+|.||||+|+..|+  .++++.
T Consensus       154 ~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~-kD~~G~TPLH~Aa~~g~~~~eIVkl  232 (764)
T PHA02716        154 DLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNL-QNNHLITPLHTYLITGNVCASVIKK  232 (764)
T ss_pred             CHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCCCHHHHHH
Confidence            346666666666 55543335666666666543  2456666666666666655 56666666666666664  366666


Q ss_pred             HHhcCCCccccccccCcchHhHH-------------------------------------HHcCCHHHHHHHHHhcCccc
Q 013339           78 ILSLNLQSAEMRTIHGETVLHLT-------------------------------------VKNNQYEAVKYLMETLNITK  120 (445)
Q Consensus        78 Ll~~~~~~~~~~~~~g~t~Lh~A-------------------------------------~~~g~~~~v~~Ll~~~~~~~  120 (445)
                      |+++| ..++.+|..|+||||.|                                     +++|+.+++++|++.   +.
T Consensus       233 LLe~G-ADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~---GA  308 (764)
T PHA02716        233 IIELG-GDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQP---GV  308 (764)
T ss_pred             HHHcC-CCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhC---CC
Confidence            66666 44556666666666643                                     334566666666665   55


Q ss_pred             ccCCCCCCCCcHHHHHHh--CCcHHHHHHHHhcCCCccccccCCCCHHHHHhhh----------ccccchhcHHHHHHHh
Q 013339          121 LANMPDNDGNTILHLATA--GKLTTMVIYLLKLGVDVNAINRKGYTALDVVESD----------ASNSGALQIVPALEEA  188 (445)
Q Consensus       121 ~~n~~d~~g~T~LHlA~~--~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~----------a~~~~~~~i~~~L~~~  188 (445)
                      .+|.+|.+|+||||+|+.  .++.+++++|++.|++++.+|..|+||||++...          ....++.+++++|++.
T Consensus       309 dIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~  388 (764)
T PHA02716        309 KLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISL  388 (764)
T ss_pred             ceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHC
Confidence            566666666666666543  3456666666666666666666666666654321          0112455666666666


Q ss_pred             cCccc
Q 013339          189 GARRC  193 (445)
Q Consensus       189 ga~~~  193 (445)
                      |++..
T Consensus       389 GADIn  393 (764)
T PHA02716        389 GADIT  393 (764)
T ss_pred             CCCCC
Confidence            66543

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.94  E-value=6e-26  Score=233.68  Aligned_cols=183  Identities=27%  Similarity=0.352  Sum_probs=107.0

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHH--HcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcC--CHHHHHH
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSC--SKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKG--RINIIDE   77 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa--~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G--~~~iv~~   77 (445)
                      ++.|+++.|++.++++ +..|..|.||||+|+  ..|+.++++.|+++|++++. .|..|.||||+|+..|  +.++++.
T Consensus        84 ~~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~iv~~  161 (480)
T PHA03100         84 DVKEIVKLLLEYGANV-NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNI-KNSDGENLLHLYLESNKIDLKILKL  161 (480)
T ss_pred             chHHHHHHHHHCCCCC-CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCc-cCCCCCcHHHHHHHcCCChHHHHHH
Confidence            3456666666666555 355566666666666  66666666666666666544 5556666666666666  5666666


Q ss_pred             HHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcC--------------------------------------cc
Q 013339           78 ILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN--------------------------------------IT  119 (445)
Q Consensus        78 Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~--------------------------------------~~  119 (445)
                      |++++ ..++.++..|.||||+|+..|+.+++++|+++..                                      .+
T Consensus       162 Ll~~g-~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g  240 (480)
T PHA03100        162 LIDKG-VDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYG  240 (480)
T ss_pred             HHHCC-CCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcC
Confidence            66655 2344455556666666666666666665555410                                      03


Q ss_pred             cccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCc
Q 013339          120 KLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGAR  191 (445)
Q Consensus       120 ~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~  191 (445)
                      ..+|.+|..|.||||.|+..++.+++++|++.|++++.+|..|.||+++    +...++.++++.|++.|++
T Consensus       241 ~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~----A~~~~~~~iv~~Ll~~g~~  308 (480)
T PHA03100        241 VPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHI----AILNNNKEIFKLLLNNGPS  308 (480)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHH----HHHhCCHHHHHHHHhcCCC
Confidence            4455556666666666666666666666666666666666666666666    3334455566666666553

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=1.5e-25  Score=204.41  Aligned_cols=161  Identities=20%  Similarity=0.251  Sum_probs=123.9

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcC--CHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHc---CCHHHHH
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKG--HLEITRELLKLDPDLSSLPDNEGRTPLHWAAIK---GRINIID   76 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g--~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~---G~~~iv~   76 (445)
                      +..++|+.|++.    .+..|..|.||||+|+..+  +.++++.|+++|++++...+..|+||||+|+..   ++.++++
T Consensus        32 ~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~  107 (209)
T PHA02859         32 DDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILK  107 (209)
T ss_pred             CcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHH
Confidence            456778888754    2356778888888888754  788888888888888763235788888887753   4678888


Q ss_pred             HHHhcCCCccccccccCcchHhHHHH--cCCHHHHHHHHHhcCcccccCCCCCCCCcHHHH-HHhCCcHHHHHHHHhcCC
Q 013339           77 EILSLNLQSAEMRTIHGETVLHLTVK--NNQYEAVKYLMETLNITKLANMPDNDGNTILHL-ATAGKLTTMVIYLLKLGV  153 (445)
Q Consensus        77 ~Ll~~~~~~~~~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHl-A~~~~~~~iv~~Ll~~g~  153 (445)
                      .|++++ ..++.+|.+|.||||.|+.  .++.+++++|++.   +..++.+|.+|+||||. |+..++.+++++|++.|+
T Consensus       108 ~Ll~~g-adin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~---gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Ga  183 (209)
T PHA02859        108 ILIDSG-SSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDS---GVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGI  183 (209)
T ss_pred             HHHHCC-CCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHc---CCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCC
Confidence            888877 5677788888888888776  3578888888877   67778888888888885 456678888888888888


Q ss_pred             CccccccCCCCHHHHHh
Q 013339          154 DVNAINRKGYTALDVVE  170 (445)
Q Consensus       154 ~~~~~n~~G~Tpl~~a~  170 (445)
                      +++.+|..|.||+|+|.
T Consensus       184 di~~~d~~g~tpl~la~  200 (209)
T PHA02859        184 DINETNKSGYNCYDLIK  200 (209)
T ss_pred             CCCCCCCCCCCHHHHHh
Confidence            88888888888888853

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.94  E-value=1.9e-26  Score=227.96  Aligned_cols=166  Identities=29%  Similarity=0.392  Sum_probs=152.9

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |+.|++++|++++.+++..-..-|.||||+|+++|++.+|..|+++|+|+.. +|.+|.||||+||..|++-++-+++.+
T Consensus        89 Nrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~-~D~~G~~~lHla~~~~~~~~vayll~~  167 (600)
T KOG0509|consen   89 NRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTL-KDKQGLTPLHLAAQFGHTALVAYLLSK  167 (600)
T ss_pred             CcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCce-ecCCCCcHHHHHHHhCchHHHHHHHHh
Confidence            6789999999999999855557799999999999999999999999999976 999999999999999999999999999


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCC-CCCCcHHHHHHhCCcHHHHHHHHhcCCCcccccc
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPD-NDGNTILHLATAGKLTTMVIYLLKLGVDVNAINR  160 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d-~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~  160 (445)
                      + .+.+.+|.+|+||||+|+..|....+..|+..   ++.++..| ++|+||||+|+..|+..++.+|++.|++.+..|.
T Consensus       168 ~-~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f---~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~  243 (600)
T KOG0509|consen  168 G-ADIDLRDNNGRTPLMWAAYKGFALFVRRLLKF---GASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNT  243 (600)
T ss_pred             c-ccCCCcCCCCCCHHHHHHHhcccHHHHHHHHh---cccccccccccCCchHHHHHhcCCcceEehhhhcCCccccccc
Confidence            9 88999999999999999999998888888876   66677776 9999999999999999999966699999999999


Q ss_pred             CCCCHHHHHhhh
Q 013339          161 KGYTALDVVESD  172 (445)
Q Consensus       161 ~G~Tpl~~a~~~  172 (445)
                      +|.||+++|.+.
T Consensus       244 ~g~tp~~LA~~~  255 (600)
T KOG0509|consen  244 NGKTPFDLAQER  255 (600)
T ss_pred             CCCCHHHHHHHh
Confidence            999999997544

>PHA02946 ankyin-like protein; Provisional

Probab=99.93  E-value=1.5e-25  Score=226.85  Aligned_cols=179  Identities=21%  Similarity=0.269  Sum_probs=150.6

Q ss_pred             HHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCC--HHHHHHHHhc
Q 013339            4 ADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGR--INIIDEILSL   81 (445)
Q Consensus         4 ~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~--~~iv~~Ll~~   81 (445)
                      .++++.|++.+.+++ ..|.+|.||||+||..|+.++|+.|+++|++++. +|.+|+||||+|+..++  .++++.|+++
T Consensus        52 ~~iv~~Ll~~Gadvn-~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~-~d~~g~TpLh~A~~~~~~~~e~v~lLl~~  129 (446)
T PHA02946         52 ERFVEELLHRGYSPN-ETDDDGNYPLHIASKINNNRIVAMLLTHGADPNA-CDKQHKTPLYYLSGTDDEVIERINLLVQY  129 (446)
T ss_pred             HHHHHHHHHCcCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCC-CCCCCCCHHHHHHHcCCchHHHHHHHHHc
Confidence            579999999999876 7899999999999999999999999999999976 89999999999998764  7899999999


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCC--cHHHHHHHHhcCCCccccc
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGK--LTTMVIYLLKLGVDVNAIN  159 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~--~~~iv~~Ll~~g~~~~~~n  159 (445)
                      +.+.....|..|.|||| |+..|+.+++++|++.   +..++.+|..|+||||+|+..+  +.+++++|++.|++++.+|
T Consensus       130 Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~---gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d  205 (446)
T PHA02946        130 GAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSI---GFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPD  205 (446)
T ss_pred             CCCcccccCCCCCcHHH-HHHCCChHHHHHHHhc---cccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccC
Confidence            85544456888999997 6667889999999987   6778889999999999887654  4688899999999999999


Q ss_pred             cCCCCHHHHHhhhccccchhcHHHHHHHhcCc
Q 013339          160 RKGYTALDVVESDASNSGALQIVPALEEAGAR  191 (445)
Q Consensus       160 ~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~  191 (445)
                      .+|.||||+|...  ..++.+++++|++ |++
T Consensus       206 ~~G~TpLH~Aa~~--~~~~~~iv~lLl~-gad  234 (446)
T PHA02946        206 HDGNTPLHIVCSK--TVKNVDIINLLLP-STD  234 (446)
T ss_pred             CCCCCHHHHHHHc--CCCcHHHHHHHHc-CCC
Confidence            9999999996432  1235567887774 544

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.93  E-value=2.2e-25  Score=233.13  Aligned_cols=149  Identities=25%  Similarity=0.306  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCC--HHHHHHHhhcCCCCCCCCCCCCccHHHHH--------------
Q 013339            3 VADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGH--LEITRELLKLDPDLSSLPDNEGRTPLHWA--------------   66 (445)
Q Consensus         3 ~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~--~~iv~~LL~~~~~~~~~~d~~G~TpLh~A--------------   66 (445)
                      ..|+++.|++.+.+++ ..|..|.||||+|+..|+  .++|+.|+++|++++. +|..|+||||.|              
T Consensus       191 ~~eIVklLLe~GADVN-~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~-kD~~G~TPLh~Ai~~a~n~~~EIvki  268 (764)
T PHA02716        191 DIDILEWLCNNGVNVN-LQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDM-KCVNGMSPIMTYIINIDNINPEITNI  268 (764)
T ss_pred             CHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHhhhccCHHHHHH
Confidence            3578888888887776 678888888888888885  4888888888888876 788888888864              


Q ss_pred             -----------------------HHcCCHHHHHHHHhcCCCccccccccCcchHhHHHH--cCCHHHHHHHHHhcCcccc
Q 013339           67 -----------------------AIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVK--NNQYEAVKYLMETLNITKL  121 (445)
Q Consensus        67 -----------------------a~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~  121 (445)
                                             +..|+.++++.|++.+ ..++.+|.+|+||||+|+.  +++.+++++|+++   +++
T Consensus       269 Lie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~G-AdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~---GAD  344 (764)
T PHA02716        269 YIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPG-VKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEY---GND  344 (764)
T ss_pred             HHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCC-CceeccCCCCCCHHHHHHHHhCCCchHHHHHHHc---CCC
Confidence                                   3457778888888877 4567778888888888764  4577888888877   677


Q ss_pred             cCCCCCCCCcHHHHHHh--------------CCcHHHHHHHHhcCCCccc
Q 013339          122 ANMPDNDGNTILHLATA--------------GKLTTMVIYLLKLGVDVNA  157 (445)
Q Consensus       122 ~n~~d~~g~T~LHlA~~--------------~~~~~iv~~Ll~~g~~~~~  157 (445)
                      +|.+|..|+||||+|+.              .++.+++++|++.|++++.
T Consensus       345 IN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~  394 (764)
T PHA02716        345 LNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITA  394 (764)
T ss_pred             CccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCC
Confidence            88888888888888764              2577888888888888753

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.93  E-value=4e-25  Score=224.48  Aligned_cols=164  Identities=24%  Similarity=0.336  Sum_probs=135.8

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCC----------------------CCCCCCC
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLS----------------------SLPDNEG   59 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~----------------------~~~d~~G   59 (445)
                      |+.|+|+.|++.+++++ ..+..|.||||+|+..|+.+++++|+++|++..                      ..+|..|
T Consensus        46 g~~~iv~~Ll~~Ga~~n-~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g  124 (434)
T PHA02874         46 GDAKIVELFIKHGADIN-HINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAEL  124 (434)
T ss_pred             CCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCC
Confidence            67889999999888776 677788999999999999988888888765431                      2267788


Q ss_pred             ccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhC
Q 013339           60 RTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAG  139 (445)
Q Consensus        60 ~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~  139 (445)
                      .||||+|+..|+.++++.|++.+ ...+.+|..|.||||+|+.+|+.+++++|+++   +..++.+|..|+||||+|+..
T Consensus       125 ~T~Lh~A~~~~~~~~v~~Ll~~g-ad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~---g~~~n~~~~~g~tpL~~A~~~  200 (434)
T PHA02874        125 KTFLHYAIKKGDLESIKMLFEYG-ADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEK---GAYANVKDNNGESPLHNAAEY  200 (434)
T ss_pred             ccHHHHHHHCCCHHHHHHHHhCC-CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHc
Confidence            99999999999999999999887 45677888899999999999999999999887   667788888899999999999


Q ss_pred             CcHHHHHHHHhcCCCccccccCCCCHHHHHh
Q 013339          140 KLTTMVIYLLKLGVDVNAINRKGYTALDVVE  170 (445)
Q Consensus       140 ~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~  170 (445)
                      ++.+++++|++.|++++..+..|.||||.|.
T Consensus       201 g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~  231 (434)
T PHA02874        201 GDYACIKLLIDHGNHIMNKCKNGFTPLHNAI  231 (434)
T ss_pred             CCHHHHHHHHhCCCCCcCCCCCCCCHHHHHH
Confidence            9999999999888887777777777777654

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.93  E-value=2.4e-25  Score=228.72  Aligned_cols=175  Identities=28%  Similarity=0.344  Sum_probs=154.6

Q ss_pred             HHHHHHHHHhchhhhcCCCCC-CChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcC
Q 013339            4 ADIVKELLEARQEFAWKKDLN-GHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLN   82 (445)
Q Consensus         4 ~d~v~~Ll~~~~~~~~~~d~~-G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~   82 (445)
                      .|+++.|++.+.+++ ..|.. |.||||+|+..|+.++++.|++.|++++. +|..|.||||.|+..|+.++++.|++.+
T Consensus       147 ~~iv~~Ll~~gadin-~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~-~d~~g~tpLh~A~~~~~~~iv~~Ll~~g  224 (477)
T PHA02878        147 AEITKLLLSYGADIN-MKDRHKGNTALHYATENKDQRLTELLLSYGANVNI-PDKTNNSPLHHAVKHYNKPIVHILLENG  224 (477)
T ss_pred             HHHHHHHHHcCCCCC-ccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            469999999999887 55666 99999999999999999999999999976 8999999999999999999999999998


Q ss_pred             CCccccccccCcchHhHHHHc-CCHHHHHHHHHhcCcccccCCCCC-CCCcHHHHHHhCCcHHHHHHHHhcCCCcccccc
Q 013339           83 LQSAEMRTIHGETVLHLTVKN-NQYEAVKYLMETLNITKLANMPDN-DGNTILHLATAGKLTTMVIYLLKLGVDVNAINR  160 (445)
Q Consensus        83 ~~~~~~~~~~g~t~Lh~A~~~-g~~~~v~~Ll~~~~~~~~~n~~d~-~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~  160 (445)
                       ...+.+|..|+||||+|+.. ++.+++++|+++   +..+|.++. .|.||||+|  .++.+++++|+++|++++..|.
T Consensus       225 -a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~---gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~  298 (477)
T PHA02878        225 -ASTDARDKCGNTPLHISVGYCKDYDILKLLLEH---GVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNS  298 (477)
T ss_pred             -CCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHc---CCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCC
Confidence             57788999999999999976 789999999998   778888876 899999999  4678999999999999999999


Q ss_pred             CCCCHHHHHhhhccccchhcHHHHHHHhc
Q 013339          161 KGYTALDVVESDASNSGALQIVPALEEAG  189 (445)
Q Consensus       161 ~G~Tpl~~a~~~a~~~~~~~i~~~L~~~g  189 (445)
                      .|.||+++|...   ....++.+.|+..+
T Consensus       299 ~g~TpL~~A~~~---~~~~~~~~~li~~~  324 (477)
T PHA02878        299 YKLTPLSSAVKQ---YLCINIGRILISNI  324 (477)
T ss_pred             CCCCHHHHHHHH---cCccchHHHHHHHH
Confidence            999999997652   22345666666554

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.93  E-value=2e-25  Score=229.75  Aligned_cols=182  Identities=27%  Similarity=0.394  Sum_probs=159.0

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHH-----HHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHH--HcCCHHH
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHL-----SCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAA--IKGRINI   74 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~-----Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa--~~G~~~i   74 (445)
                      ++.++++.|++.+.+++ ..+..|.||||+     |+..|+.++++.|++.|++++. .|..|.||||+|+  ..|+.++
T Consensus        46 ~~~~ivk~Ll~~g~~~~-~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~-~d~~g~tpL~~A~~~~~~~~~i  123 (480)
T PHA03100         46 RNIDVVKILLDNGADIN-SSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNA-PDNNGITPLLYAISKKSNSYSI  123 (480)
T ss_pred             CCHHHHHHHHHcCCCCC-CccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCC-CCCCCCchhhHHHhcccChHHH
Confidence            57899999999998876 778889999999     9999999999999999999955 8999999999999  9999999


Q ss_pred             HHHHHhcCCCccccccccCcchHhHHHHcC--CHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcC
Q 013339           75 IDEILSLNLQSAEMRTIHGETVLHLTVKNN--QYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG  152 (445)
Q Consensus        75 v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g  152 (445)
                      ++.|++.+ ...+..+..|.||||.|+..|  +.+++++|+++   +..++.+|..|.||||+|+..++.+++++|++.|
T Consensus       124 v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~---g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g  199 (480)
T PHA03100        124 VEYLLDNG-ANVNIKNSDGENLLHLYLESNKIDLKILKLLIDK---GVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNG  199 (480)
T ss_pred             HHHHHHcC-CCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHC---CCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            99999998 567788999999999999999  99999999998   7778899999999999999999888888888888


Q ss_pred             CCccccccCC------CCHHHHHhhhccccch--hcHHHHHHHhcCccc
Q 013339          153 VDVNAINRKG------YTALDVVESDASNSGA--LQIVPALEEAGARRC  193 (445)
Q Consensus       153 ~~~~~~n~~G------~Tpl~~a~~~a~~~~~--~~i~~~L~~~ga~~~  193 (445)
                      ++++..+..|      .||++.+    ...++  .+++++|++.|++..
T Consensus       200 a~~~~~~~~~~~~~~~~t~l~~a----~~~~~~~~~iv~~Ll~~g~din  244 (480)
T PHA03100        200 ADINAGDIETLLFTIFETPLHIA----ACYNEITLEVVNYLLSYGVPIN  244 (480)
T ss_pred             CCccCCCCCCCcHHHHHhHHHHH----HHhCcCcHHHHHHHHHcCCCCC
Confidence            8888777777      6777773    33344  667777777766543

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.93  E-value=5.7e-25  Score=226.75  Aligned_cols=183  Identities=22%  Similarity=0.313  Sum_probs=154.8

Q ss_pred             HHHHHHHHHHhchhhhcCCCCCCChHHHHHHHc---CCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHc--CCHHHHHH
Q 013339            3 VADIVKELLEARQEFAWKKDLNGHTPLHLSCSK---GHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIK--GRINIIDE   77 (445)
Q Consensus         3 ~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~---g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~--G~~~iv~~   77 (445)
                      +.|+++.|++.+.+++ ..|..|.||||.|+..   |+.++++.|+++|++++..+|..|+||||+|+..  ++.++++.
T Consensus        87 ~~~iv~~Ll~~Gadin-~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~  165 (494)
T PHA02989         87 IKKIVKLLLKFGADIN-LKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKI  165 (494)
T ss_pred             HHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHH
Confidence            5689999999999876 7788999999988765   6799999999999999545899999999998764  68899999


Q ss_pred             HHhcCCCccccccccCcchHhHHHHcC----CHHHHHHHHHhcCc-----------------------------------
Q 013339           78 ILSLNLQSAEMRTIHGETVLHLTVKNN----QYEAVKYLMETLNI-----------------------------------  118 (445)
Q Consensus        78 Ll~~~~~~~~~~~~~g~t~Lh~A~~~g----~~~~v~~Ll~~~~~-----------------------------------  118 (445)
                      |+++|.+.....+..|.||||+|+.++    +.+++++|+++...                                   
T Consensus       166 Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~  245 (494)
T PHA02989        166 LLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK  245 (494)
T ss_pred             HHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh
Confidence            999995443336778999999998764    88999999986311                                   


Q ss_pred             ccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHHHHHhcC
Q 013339          119 TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA  190 (445)
Q Consensus       119 ~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga  190 (445)
                      +..+|.+|.+|+||||+|+..++.+++++|++.|++++.+|..|.|||++    |...++.++++.|++.++
T Consensus       246 ~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~----A~~~~~~~iv~~LL~~~p  313 (494)
T PHA02989        246 YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTY----AIKHGNIDMLNRILQLKP  313 (494)
T ss_pred             CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHH----HHHcCCHHHHHHHHhcCC
Confidence            12357788899999999999999999999999999999999999999999    455577889999988664

>PHA02798 ankyrin-like protein; Provisional

Probab=99.93  E-value=6.1e-25  Score=226.27  Aligned_cols=183  Identities=26%  Similarity=0.270  Sum_probs=134.8

Q ss_pred             HHHHHHHHHhchhhhcCCCCCCChHHHHHHHcC---CHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCC---HHHHHH
Q 013339            4 ADIVKELLEARQEFAWKKDLNGHTPLHLSCSKG---HLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGR---INIIDE   77 (445)
Q Consensus         4 ~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g---~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~---~~iv~~   77 (445)
                      .|+++.|++.+.+++ ..|.+|+||||+|+..|   +.++++.|+++|++++. +|.+|.||||+|+..|+   .++++.
T Consensus        89 ~~iv~~Ll~~GadiN-~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~-~d~~g~tpL~~a~~~~~~~~~~vv~~  166 (489)
T PHA02798         89 LDIVKILIENGADIN-KKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTL-LDKDGFTMLQVYLQSNHHIDIEIIKL  166 (489)
T ss_pred             HHHHHHHHHCCCCCC-CCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccc-cCCCCCcHHHHHHHcCCcchHHHHHH
Confidence            577777777777755 56667777777777764   56777777777777755 67777777777777776   777777


Q ss_pred             HHhcCCCccccc-cccCcchHhHHHHc----CCHHHHHHHHHhcCc----------------------------------
Q 013339           78 ILSLNLQSAEMR-TIHGETVLHLTVKN----NQYEAVKYLMETLNI----------------------------------  118 (445)
Q Consensus        78 Ll~~~~~~~~~~-~~~g~t~Lh~A~~~----g~~~~v~~Ll~~~~~----------------------------------  118 (445)
                      |++.|. +++.. +..|.||||.++.+    ++.+++++|+++...                                  
T Consensus       167 Ll~~ga-din~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l  245 (489)
T PHA02798        167 LLEKGV-DINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFI  245 (489)
T ss_pred             HHHhCC-CcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHH
Confidence            777763 33333 34567777776653    356777777654210                                  


Q ss_pred             --ccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCccc
Q 013339          119 --TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRC  193 (445)
Q Consensus       119 --~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~  193 (445)
                        +.++|.+|..|+||||+|+..++.+++++|++.|++++.+|..|.|||++    |...++.++++.|++.+++..
T Consensus       246 ~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~----A~~~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        246 FSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFT----AFENESKFIFNSILNKKPNKN  318 (489)
T ss_pred             HhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHH----HHHcCcHHHHHHHHccCCCHH
Confidence              12467788899999999999999999999999999999999999999999    455677889999988877643

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=1.6e-25  Score=225.43  Aligned_cols=163  Identities=33%  Similarity=0.497  Sum_probs=146.8

Q ss_pred             CHHHHHHHHHHhch--------------hhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHH
Q 013339            2 HVADIVKELLEARQ--------------EFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAA   67 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~--------------~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa   67 (445)
                      |..++++.+|+.+.              ++.+..|.+|+||||+||+.|++++++.|+..|++++. +++++.||||.||
T Consensus       236 g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~-kn~d~~spLH~AA  314 (929)
T KOG0510|consen  236 GDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINS-KNKDEESPLHFAA  314 (929)
T ss_pred             CCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccc-cCCCCCCchHHHH
Confidence            56777888776542              34456799999999999999999999999999999987 8999999999999


Q ss_pred             HcCCHHHHHHHHh-cCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccC---CCCCCCCcHHHHHHhCCcHH
Q 013339           68 IKGRINIIDEILS-LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLAN---MPDNDGNTILHLATAGKLTT  143 (445)
Q Consensus        68 ~~G~~~iv~~Ll~-~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n---~~d~~g~T~LHlA~~~~~~~  143 (445)
                      ..|+++.|+.|++ .+-...+..|..|.||||+|+++||..+++.|+++   |++.+   ..|.+|+||||+|+..|+..
T Consensus       315 ~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~---GA~~~~~~e~D~dg~TaLH~Aa~~g~~~  391 (929)
T KOG0510|consen  315 IYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNK---GALFLNMSEADSDGNTALHLAAKYGNTS  391 (929)
T ss_pred             HcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhc---ChhhhcccccccCCchhhhHHHHhccHH
Confidence            9999999999999 55556778888999999999999999999999998   55444   56999999999999999999


Q ss_pred             HHHHHHhcCCCccccccCCCCHHHH
Q 013339          144 MVIYLLKLGVDVNAINRKGYTALDV  168 (445)
Q Consensus       144 iv~~Ll~~g~~~~~~n~~G~Tpl~~  168 (445)
                      ++++|+.+|++++.+|+.|.|++|+
T Consensus       392 av~~Li~~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  392 AVQKLISHGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             HHHHHHHcCCceeeccccccccccc
Confidence            9999999999999999999999995

>PHA02946 ankyin-like protein; Provisional

Probab=99.93  E-value=8.3e-25  Score=221.41  Aligned_cols=180  Identities=22%  Similarity=0.303  Sum_probs=158.4

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCC--HHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHH
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGH--LEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL   79 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~--~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll   79 (445)
                      |+.|+++.|++++.+++ .+|.+|.||||+|+..++  .++++.|+++|++++...|.+|.|||| ||..|+.++++.|+
T Consensus        83 g~~eiv~lLL~~GAdin-~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll  160 (446)
T PHA02946         83 NNNRIVAMLLTHGADPN-ACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIM  160 (446)
T ss_pred             CCHHHHHHHHHCcCCCC-CCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHH
Confidence            67899999999998886 789999999999998764  899999999999998767999999998 77789999999999


Q ss_pred             hcCCCccccccccCcchHhHHHHcC--CHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCC--cHHHHHHHHhcCCCc
Q 013339           80 SLNLQSAEMRTIHGETVLHLTVKNN--QYEAVKYLMETLNITKLANMPDNDGNTILHLATAGK--LTTMVIYLLKLGVDV  155 (445)
Q Consensus        80 ~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~--~~~iv~~Ll~~g~~~  155 (445)
                      +.+ ...+.+|..|+||||+|+..+  +.+++++|++.   +..+|.+|.+|+||||+|+..+  +.+++++|++ |+++
T Consensus       161 ~~g-ad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~---Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadi  235 (446)
T PHA02946        161 SIG-FEARIVDKFGKNHIHRHLMSDNPKASTISWMMKL---GISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDV  235 (446)
T ss_pred             hcc-ccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCC
Confidence            988 677889999999999998755  46899999987   7889999999999999999876  7889999885 8999


Q ss_pred             cccccCCCCHHHHHhhhccccch-hcHHHHHHHhcCcc
Q 013339          156 NAINRKGYTALDVVESDASNSGA-LQIVPALEEAGARR  192 (445)
Q Consensus       156 ~~~n~~G~Tpl~~a~~~a~~~~~-~~i~~~L~~~ga~~  192 (445)
                      |.+|..|.||||+|..    .++ .++++.|+..|+..
T Consensus       236 n~~d~~G~TpLh~A~~----~~~~~~~~~~Ll~~g~~~  269 (446)
T PHA02946        236 NKQNKFGDSPLTLLIK----TLSPAHLINKLLSTSNVI  269 (446)
T ss_pred             CCCCCCCCCHHHHHHH----hCChHHHHHHHHhCCCCC
Confidence            9999999999999644    333 47889999888643

>PHA02795 ankyrin-like protein; Provisional

Probab=99.92  E-value=1.9e-24  Score=212.56  Aligned_cols=185  Identities=21%  Similarity=0.165  Sum_probs=160.7

Q ss_pred             CHHHHHHHHHHhchhhh-----cCCCCCCChHHHHHHH--cCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHH
Q 013339            2 HVADIVKELLEARQEFA-----WKKDLNGHTPLHLSCS--KGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINI   74 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~-----~~~d~~G~TpLH~Aa~--~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~i   74 (445)
                      |..|+++.|+.++...+     -+.+..++|+||+|+.  .|+.++|++|+++|++++.   .++.||||.|+..|+.++
T Consensus        88 ~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~---~~~~t~lh~A~~~~~~eI  164 (437)
T PHA02795         88 TYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYK---IECLNAYFRGICKKESSV  164 (437)
T ss_pred             chHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCC---CCCCCHHHHHHHcCcHHH
Confidence            56789999999988755     1477789999999999  9999999999999999965   345899999999999999


Q ss_pred             HHHHHhcCCCccccc-----cccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHH
Q 013339           75 IDEILSLNLQSAEMR-----TIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLL  149 (445)
Q Consensus        75 v~~Ll~~~~~~~~~~-----~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll  149 (445)
                      ++.|+++|....+..     +..+.+++|.|+.+++.+++++|+++   ++++|.+|.+|.||||+|+..|+.+++++|+
T Consensus       165 Vk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~---GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL  241 (437)
T PHA02795        165 VEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPY---IEDINQLDAGGRTLLYRAIYAGYIDLVSWLL  241 (437)
T ss_pred             HHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhC---cCCcCcCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999985433322     23478999999999999999999998   7889999999999999999999999999999


Q ss_pred             hcCCCccccccCCCCHHHHHhhhcc----ccchhcHHHHHHHhcCcc
Q 013339          150 KLGVDVNAINRKGYTALDVVESDAS----NSGALQIVPALEEAGARR  192 (445)
Q Consensus       150 ~~g~~~~~~n~~G~Tpl~~a~~~a~----~~~~~~i~~~L~~~ga~~  192 (445)
                      ++|++++.+|..|.||||+|.....    ...+.+++++|++.|+..
T Consensus       242 ~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI  288 (437)
T PHA02795        242 ENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSI  288 (437)
T ss_pred             HCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCC
Confidence            9999999999999999999765442    234678999999988753

>PHA03095 ankyrin-like protein; Provisional

Probab=99.92  E-value=5e-24  Score=218.86  Aligned_cols=179  Identities=26%  Similarity=0.297  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHhchhhhcCCCCCCChHHHHHH--HcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcC--CHHHHHHH
Q 013339            3 VADIVKELLEARQEFAWKKDLNGHTPLHLSC--SKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKG--RINIIDEI   78 (445)
Q Consensus         3 ~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa--~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G--~~~iv~~L   78 (445)
                      ..++++.|++.+.+++ ..|..|.||||+|+  ..++.++++.|+++|++++. .|..|.||||+|+..+  +.++++.|
T Consensus        96 ~~~iv~lLl~~ga~in-~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~-~d~~g~tpL~~a~~~~~~~~~iv~~L  173 (471)
T PHA03095         96 TLDVIKLLIKAGADVN-AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNA-LDLYGMTPLAVLLKSRNANVELLRLL  173 (471)
T ss_pred             cHHHHHHHHHcCCCCC-CCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCCCCHHHHHHH
Confidence            3677777777777765 66777788888877  44567777777777777765 6777777777777655  46677777


Q ss_pred             HhcCCCccccccccCcchHhHHHHc--CCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcH--HHHHHHHhcCCC
Q 013339           79 LSLNLQSAEMRTIHGETVLHLTVKN--NQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLT--TMVIYLLKLGVD  154 (445)
Q Consensus        79 l~~~~~~~~~~~~~g~t~Lh~A~~~--g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~--~iv~~Ll~~g~~  154 (445)
                      ++.+... ...|..|+||||.|+..  ++.++++.|++.   +..++.+|..|+||||+|+..++.  .+++.|++.|++
T Consensus       174 l~~g~~~-~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~---g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~d  249 (471)
T PHA03095        174 IDAGADV-YAVDDRFRSLLHHHLQSFKPRARIVRELIRA---GCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGIS  249 (471)
T ss_pred             HHcCCCC-cccCCCCCCHHHHHHHHCCCcHHHHHHHHHc---CCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCC
Confidence            7766433 22355566666665543  445555555544   334444444444444444444432  233444444444


Q ss_pred             ccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCc
Q 013339          155 VNAINRKGYTALDVVESDASNSGALQIVPALEEAGAR  191 (445)
Q Consensus       155 ~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~  191 (445)
                      +|.+|..|+||||+    |...++.+++++|++.|++
T Consensus       250 in~~d~~g~TpLh~----A~~~~~~~~v~~LL~~gad  282 (471)
T PHA03095        250 INARNRYGQTPLHY----AAVFNNPRACRRLIALGAD  282 (471)
T ss_pred             CCCcCCCCCCHHHH----HHHcCCHHHHHHHHHcCCC
Confidence            44444444444444    2223334444444444444

>PHA03095 ankyrin-like protein; Provisional

Probab=99.91  E-value=1.2e-23  Score=216.10  Aligned_cols=184  Identities=24%  Similarity=0.305  Sum_probs=163.1

Q ss_pred             HHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcC---CHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcC-CHHHHHHH
Q 013339            3 VADIVKELLEARQEFAWKKDLNGHTPLHLSCSKG---HLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKG-RINIIDEI   78 (445)
Q Consensus         3 ~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g---~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G-~~~iv~~L   78 (445)
                      ..|+++.|++.+.+++ ..|..|.||||+|+..|   +.++++.|++.|++++. +|..|.||||+|+..| +.++++.|
T Consensus        26 ~~~~v~~Ll~~ga~vn-~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~-~~~~g~TpLh~A~~~~~~~~iv~lL  103 (471)
T PHA03095         26 TVEEVRRLLAAGADVN-FRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNA-PERCGFTPLHLYLYNATTLDVIKLL  103 (471)
T ss_pred             CHHHHHHHHHcCCCcc-cCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCCcHHHHHHH
Confidence            4689999999998877 77889999999999999   99999999999999987 7889999999999999 59999999


Q ss_pred             HhcCCCccccccccCcchHhHHH--HcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCC--cHHHHHHHHhcCCC
Q 013339           79 LSLNLQSAEMRTIHGETVLHLTV--KNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGK--LTTMVIYLLKLGVD  154 (445)
Q Consensus        79 l~~~~~~~~~~~~~g~t~Lh~A~--~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~--~~~iv~~Ll~~g~~  154 (445)
                      ++++ ..++.+|..|+||||+|+  .+++.+++++|++.   +..++.+|..|.||||+|+..+  ..+++++|++.|++
T Consensus       104 l~~g-a~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~---gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~  179 (471)
T PHA03095        104 IKAG-ADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRK---GADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGAD  179 (471)
T ss_pred             HHcC-CCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHc---CCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCC
Confidence            9998 567888999999999999  56689999999998   7789999999999999998866  68999999999999


Q ss_pred             ccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCcccC
Q 013339          155 VNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCD  194 (445)
Q Consensus       155 ~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~~  194 (445)
                      ++..|..|.||+|.+...  ..+..++++.|++.|+++..
T Consensus       180 ~~~~d~~g~t~Lh~~~~~--~~~~~~i~~~Ll~~g~~~~~  217 (471)
T PHA03095        180 VYAVDDRFRSLLHHHLQS--FKPRARIVRELIRAGCDPAA  217 (471)
T ss_pred             CcccCCCCCCHHHHHHHH--CCCcHHHHHHHHHcCCCCcc
Confidence            999999999999986532  23556789999999987543

>PHA02798 ankyrin-like protein; Provisional

Probab=99.91  E-value=9.3e-24  Score=217.50  Aligned_cols=181  Identities=20%  Similarity=0.264  Sum_probs=156.8

Q ss_pred             HHHHHHHHHHhchhhhcCCCCCCChHHHHHHHc-----CCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcC---CHHH
Q 013339            3 VADIVKELLEARQEFAWKKDLNGHTPLHLSCSK-----GHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKG---RINI   74 (445)
Q Consensus         3 ~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~-----g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G---~~~i   74 (445)
                      ..|+++.|++.+.+++ ..|..|.||||.|+..     ++.++++.|+++|++++. +|.+|+||||+|+..|   +.++
T Consensus        50 ~~~iv~~Ll~~Gadvn-~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~-~d~~G~TpLh~a~~~~~~~~~~i  127 (489)
T PHA02798         50 STDIVKLFINLGANVN-GLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINK-KNSDGETPLYCLLSNGYINNLEI  127 (489)
T ss_pred             CHHHHHHHHHCCCCCC-CCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCC-CCCCcCcHHHHHHHcCCcChHHH
Confidence            5799999999999887 7889999999999864     779999999999999977 8999999999999986   7899


Q ss_pred             HHHHHhcCCCccccccccCcchHhHHHHcCC---HHHHHHHHHhcCcccccCCCC-CCCCcHHHHHHhC----CcHHHHH
Q 013339           75 IDEILSLNLQSAEMRTIHGETVLHLTVKNNQ---YEAVKYLMETLNITKLANMPD-NDGNTILHLATAG----KLTTMVI  146 (445)
Q Consensus        75 v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~---~~~v~~Ll~~~~~~~~~n~~d-~~g~T~LHlA~~~----~~~~iv~  146 (445)
                      ++.|+++| .+++.+|.+|.||||+|+..|+   .+++++|++.   +.++|.++ ..|.||||.++..    ++.++++
T Consensus       128 v~~Ll~~G-advn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~---gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk  203 (489)
T PHA02798        128 LLFMIENG-ADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEK---GVDINTHNNKEKYDTLHCYFKYNIDRIDADILK  203 (489)
T ss_pred             HHHHHHcC-CCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHh---CCCcccccCcCCCcHHHHHHHhccccCCHHHHH
Confidence            99999998 5678899999999999999988   9999999998   67788774 5789999998764    3678888


Q ss_pred             HHHhcCCC---------------------------------------ccccccCCCCHHHHHhhhccccchhcHHHHHHH
Q 013339          147 YLLKLGVD---------------------------------------VNAINRKGYTALDVVESDASNSGALQIVPALEE  187 (445)
Q Consensus       147 ~Ll~~g~~---------------------------------------~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~  187 (445)
                      +|+++|++                                       +|.+|..|.||||+    |...++.+++++|++
T Consensus       204 ~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~----A~~~~~~~~v~~LL~  279 (489)
T PHA02798        204 LFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYY----SVSHNNRKIFEYLLQ  279 (489)
T ss_pred             HHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHH----HHHcCcHHHHHHHHH
Confidence            88877654                                       45567789999999    455677889999999


Q ss_pred             hcCccc
Q 013339          188 AGARRC  193 (445)
Q Consensus       188 ~ga~~~  193 (445)
                      .|++..
T Consensus       280 ~GAdin  285 (489)
T PHA02798        280 LGGDIN  285 (489)
T ss_pred             cCCccc
Confidence            999754

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.91  E-value=1.5e-23  Score=191.28  Aligned_cols=163  Identities=17%  Similarity=0.164  Sum_probs=139.7

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcC--CHHHHHHHHhcCCCcccccc-ccCcch
Q 013339           20 KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKG--RINIIDEILSLNLQSAEMRT-IHGETV   96 (445)
Q Consensus        20 ~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G--~~~iv~~Ll~~~~~~~~~~~-~~g~t~   96 (445)
                      .....++||||.|+..|+.++|+.|++..   +. .|..|.||||+|+..+  +.++++.|++.++ .++.++ ..|.||
T Consensus        16 ~~~~~~~~pL~~A~~~~~~~~vk~Li~~~---n~-~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~ga-dvn~~~~~~g~Tp   90 (209)
T PHA02859         16 YLFYRYCNPLFYYVEKDDIEGVKKWIKFV---ND-CNDLYETPIFSCLEKDKVNVEILKFLIENGA-DVNFKTRDNNLSA   90 (209)
T ss_pred             HHhhccCcHHHHHHHhCcHHHHHHHHHhh---hc-cCccCCCHHHHHHHcCCCCHHHHHHHHHCCC-CCCccCCCCCCCH
Confidence            34567899999999999999999999763   23 6889999999999855  8999999999994 556665 589999


Q ss_pred             HhHHHHc---CCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHh--CCcHHHHHHHHhcCCCccccccCCCCHHHHHhh
Q 013339           97 LHLTVKN---NQYEAVKYLMETLNITKLANMPDNDGNTILHLATA--GKLTTMVIYLLKLGVDVNAINRKGYTALDVVES  171 (445)
Q Consensus        97 Lh~A~~~---g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~--~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~  171 (445)
                      ||+|+..   ++.+++++|+++   +..+|.+|.+|.||||+|+.  .++.+++++|++.|++++.+|..|.||+|.+. 
T Consensus        91 Lh~a~~~~~~~~~eiv~~Ll~~---gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a-  166 (209)
T PHA02859         91 LHHYLSFNKNVEPEILKILIDS---GSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYI-  166 (209)
T ss_pred             HHHHHHhCccccHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHH-
Confidence            9998864   479999999988   78899999999999999986  46899999999999999999999999999642 


Q ss_pred             hccccchhcHHHHHHHhcCccc
Q 013339          172 DASNSGALQIVPALEEAGARRC  193 (445)
Q Consensus       172 ~a~~~~~~~i~~~L~~~ga~~~  193 (445)
                        ...++.+++++|++.|++..
T Consensus       167 --~~~~~~~iv~~Ll~~Gadi~  186 (209)
T PHA02859        167 --LFHSDKKIFDFLTSLGIDIN  186 (209)
T ss_pred             --HhcCCHHHHHHHHHcCCCCC
Confidence              23457889999999998654

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=5.2e-24  Score=202.65  Aligned_cols=176  Identities=27%  Similarity=0.408  Sum_probs=156.3

Q ss_pred             CHHHHHHHHHHhchh---hh-----cCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHH
Q 013339            2 HVADIVKELLEARQE---FA-----WKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRIN   73 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~---~~-----~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~   73 (445)
                      |+.|+|++|+++...   ..     +-...+|-+||-.|+..||+++|+.|+++|++++. ......|||--||..|+.+
T Consensus        53 GH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~-tT~TNStPLraACfDG~le  131 (615)
T KOG0508|consen   53 GHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVND-TTRTNSTPLRAACFDGHLE  131 (615)
T ss_pred             CcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcccc-ccccCCccHHHHHhcchhH
Confidence            689999999995421   11     12345789999999999999999999999999987 5556679999999999999


Q ss_pred             HHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCC
Q 013339           74 IIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGV  153 (445)
Q Consensus        74 iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~  153 (445)
                      ++|+|++++ .++++.|..|.|+||+|+..|+.+++++|++.   ++++|.++..|||+||.|+..|+.+++++|+..|+
T Consensus       132 ivKyLvE~g-ad~~IanrhGhTcLmIa~ykGh~~I~qyLle~---gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga  207 (615)
T KOG0508|consen  132 IVKYLVEHG-ADPEIANRHGHTCLMIACYKGHVDIAQYLLEQ---GADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGA  207 (615)
T ss_pred             HHHHHHHcC-CCCcccccCCCeeEEeeeccCchHHHHHHHHh---CCCcchhcccCchHHHhhhhcccHHHHHHHHhCCc
Confidence            999999988 78999999999999999999999999999998   88999999999999999999999999999999999


Q ss_pred             CccccccCCCCHHHHHhhhccccchhcHHHHHHH
Q 013339          154 DVNAINRKGYTALDVVESDASNSGALQIVPALEE  187 (445)
Q Consensus       154 ~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~  187 (445)
                      .++.-+ .|.|||-.    +...++.++++.|++
T Consensus       208 ~i~~d~-~GmtPL~~----Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  208 KIDVDG-HGMTPLLL----AAVTGHTDIVERLLQ  236 (615)
T ss_pred             eeeecC-CCCchHHH----HhhhcchHHHHHHhc
Confidence            987644 59999999    666778888888886

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.91  E-value=3.5e-23  Score=221.71  Aligned_cols=163  Identities=25%  Similarity=0.251  Sum_probs=118.9

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      +..++++.|++.+.+++ ..|..|+||||+||..|+.++|++|+++|++++. .+.+|.||||+|+..|+.++++.|++.
T Consensus       156 ~~~~i~k~Ll~~Gadvn-~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~-~~~~g~t~L~~A~~~~~~~ivk~Ll~~  233 (682)
T PHA02876        156 DELLIAEMLLEGGADVN-AKDIYCITPIHYAAERGNAKMVNLLLSYGADVNI-IALDDLSVLECAVDSKNIDTIKAIIDN  233 (682)
T ss_pred             CcHHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCc-cCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            46789999999999887 7788999999999999999999999999998865 677778888888888877777777654


Q ss_pred             CCC----------------------------ccccccccCcchHhHHHHcCCH-HHHHHHHHhcCcccccCCCCCCCCcH
Q 013339           82 NLQ----------------------------SAEMRTIHGETVLHLTVKNNQY-EAVKYLMETLNITKLANMPDNDGNTI  132 (445)
Q Consensus        82 ~~~----------------------------~~~~~~~~g~t~Lh~A~~~g~~-~~v~~Ll~~~~~~~~~n~~d~~g~T~  132 (445)
                      ++.                            ..+..+..|.||||+|+..|+. +++++|++.   +..++.+|.+|.||
T Consensus       234 ~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~---gadin~~d~~g~Tp  310 (682)
T PHA02876        234 RSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLER---GADVNAKNIKGETP  310 (682)
T ss_pred             CCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHC---CCCCCCcCCCCCCH
Confidence            432                            2333455677777777777764 466666665   55566666667777


Q ss_pred             HHHHHhCC-cHHHHHHHHhcCCCccccccCCCCHHHHH
Q 013339          133 LHLATAGK-LTTMVIYLLKLGVDVNAINRKGYTALDVV  169 (445)
Q Consensus       133 LHlA~~~~-~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a  169 (445)
                      ||+|+..| ..+++++|+..|++++..|..|.||||+|
T Consensus       311 Lh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A  348 (682)
T PHA02876        311 LYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQA  348 (682)
T ss_pred             HHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHH
Confidence            77666666 35556666666666665555555555554

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=2.4e-23  Score=226.26  Aligned_cols=161  Identities=27%  Similarity=0.328  Sum_probs=136.7

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |+.++++.|++.+.+++ ..|.+|+||||+||..|+.++++.|+++|++++. +|.+|+||||+|+..|+.++++.|++.
T Consensus       536 g~~~~l~~Ll~~G~d~n-~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~-~d~~G~TpL~~A~~~g~~~iv~~L~~~  613 (823)
T PLN03192        536 GNAALLEELLKAKLDPD-IGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHI-RDANGNTALWNAISAKHHKIFRILYHF  613 (823)
T ss_pred             CCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCC-cCCCCCCHHHHHHHhCCHHHHHHHHhc
Confidence            67788999998888876 7788899999999999999999999999888866 788899999999999999999988876


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccC
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK  161 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~  161 (445)
                      +...   ....|.++||.|+.+|+.+++++|+++   +.++|.+|.+|+||||+|+..|+.+++++|+++|++++..|..
T Consensus       614 ~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~---Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~  687 (823)
T PLN03192        614 ASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQ---GLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTD  687 (823)
T ss_pred             Cccc---CcccCchHHHHHHHhCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCC
Confidence            5321   234577899999999999999999887   7788888999999999999999999999999999999998888


Q ss_pred             C-CCHHHHHh
Q 013339          162 G-YTALDVVE  170 (445)
Q Consensus       162 G-~Tpl~~a~  170 (445)
                      | .||.+++.
T Consensus       688 g~~t~~~l~~  697 (823)
T PLN03192        688 DDFSPTELRE  697 (823)
T ss_pred             CCCCHHHHHH
Confidence            8 88888753

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.90  E-value=7.7e-23  Score=219.08  Aligned_cols=180  Identities=26%  Similarity=0.331  Sum_probs=121.4

Q ss_pred             HHHHHHHHhchhhhcCCCCCCChHHHHHHHcC-CHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcC-CHHHHHHHHhcC
Q 013339            5 DIVKELLEARQEFAWKKDLNGHTPLHLSCSKG-HLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKG-RINIIDEILSLN   82 (445)
Q Consensus         5 d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g-~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G-~~~iv~~Ll~~~   82 (445)
                      ++++.|++.+.+++ ..|..|.||||+|+..| +.++++.|++.|++++. .|..|.||||+|+..| +.++++.|++.+
T Consensus       288 ~iv~lLl~~gadin-~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~-~d~~g~TpLh~A~~~~~~~~iv~lLl~~g  365 (682)
T PHA02876        288 RLVPKLLERGADVN-AKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNA-ADRLYITPLHQASTLDRNKDIVITLLELG  365 (682)
T ss_pred             HHHHHHHHCCCCCC-CcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCC-cccCCCcHHHHHHHhCCcHHHHHHHHHcC
Confidence            45666666665544 55666666666666666 46666666666666654 5666666666666643 456666666665


Q ss_pred             CCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCc-HHHHHHHHhcCCCccccccC
Q 013339           83 LQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKL-TTMVIYLLKLGVDVNAINRK  161 (445)
Q Consensus        83 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~-~~iv~~Ll~~g~~~~~~n~~  161 (445)
                       ..++.+|..|.||||+|+..|+.+++++|++.   +..++..+..|.||||+|+..+. ..++++|+++|+++|.+|..
T Consensus       366 -adin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~---gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~  441 (682)
T PHA02876        366 -ANVNARDYCDKTPIHYAAVRNNVVIINTLLDY---GADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKD  441 (682)
T ss_pred             -CCCccCCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCC
Confidence             45666677777777777777777777777776   56667777777777777776554 45567777788888888888


Q ss_pred             CCCHHHHHhhhccccchhcHHHHHHHhcCccc
Q 013339          162 GYTALDVVESDASNSGALQIVPALEEAGARRC  193 (445)
Q Consensus       162 G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~  193 (445)
                      |+||||+|...   ....+++++|++.|++..
T Consensus       442 G~TpLh~Aa~~---~~~~~iv~lLl~~Gad~n  470 (682)
T PHA02876        442 LSTPLHYACKK---NCKLDVIEMLLDNGADVN  470 (682)
T ss_pred             CChHHHHHHHh---CCcHHHHHHHHHCCCCCC
Confidence            88888885321   224568888888887654

>PHA02917 ankyrin-like protein; Provisional

Probab=99.90  E-value=8.3e-23  Score=214.76  Aligned_cols=178  Identities=19%  Similarity=0.218  Sum_probs=133.9

Q ss_pred             HHHHHHHHHhchhhhcCCCCCCChHHHHHHHc---CCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCC---------
Q 013339            4 ADIVKELLEARQEFAWKKDLNGHTPLHLSCSK---GHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGR---------   71 (445)
Q Consensus         4 ~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~---g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~---------   71 (445)
                      .|.++.|+..+... ...|.+|+||||+||..   |+.++|+.||+.|++++. +|..|+||||.|+..|+         
T Consensus        12 ~~~~~~l~~~~~~~-~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~-~~~~g~TpL~~Aa~~g~~~v~~~~~~   89 (661)
T PHA02917         12 LDELKQMLRDRDPN-DTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLH-KNWRQLTPLEEYTNSRHVKVNKDIAM   89 (661)
T ss_pred             HHHHHHHHhccCcc-cccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccc-cCCCCCCHHHHHHHcCChhHHHHHHH
Confidence            46788888755444 57799999999997655   789999999999999976 88999999998887665         


Q ss_pred             --------------------------HHHHHHHHhcCCCccccccccCcchHhHH--HHcCCHHHHHHHHHhcCcccccC
Q 013339           72 --------------------------INIIDEILSLNLQSAEMRTIHGETVLHLT--VKNNQYEAVKYLMETLNITKLAN  123 (445)
Q Consensus        72 --------------------------~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A--~~~g~~~~v~~Ll~~~~~~~~~n  123 (445)
                                                .++++.|+++| .+++.+|.+|+||||.|  +.+|+.+++++|+++   ++.+|
T Consensus        90 ~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~G-adin~~d~~g~T~L~~~~a~~~~~~eivklLi~~---Ga~vn  165 (661)
T PHA02917         90 ALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHG-FDLSVKCENHRSVIENYVMTDDPVPEIIDLFIEN---GCSVL  165 (661)
T ss_pred             HHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcC-CCCCccCCCCccHHHHHHHccCCCHHHHHHHHHc---CCCcc
Confidence                                      34444455554 45566777889999854  357889999999887   66666


Q ss_pred             CCCC---CC-----------CcHHHHHHh-----------CCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccch
Q 013339          124 MPDN---DG-----------NTILHLATA-----------GKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGA  178 (445)
Q Consensus       124 ~~d~---~g-----------~T~LHlA~~-----------~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~  178 (445)
                      .+|.   .|           .||||+|+.           .++.+++++|++.|+++|.+|.+|.||||++..    .++
T Consensus       166 ~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~----~g~  241 (661)
T PHA02917        166 YEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIK----SSH  241 (661)
T ss_pred             ccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHH----cCC
Confidence            5543   23           499999875           457889999999999999999999999998543    333


Q ss_pred             --hcHHHHHHHhcCcc
Q 013339          179 --LQIVPALEEAGARR  192 (445)
Q Consensus       179 --~~i~~~L~~~ga~~  192 (445)
                        .+++++|++ |++.
T Consensus       242 ~~~eivk~Li~-g~d~  256 (661)
T PHA02917        242 IDIDIVKLLMK-GIDN  256 (661)
T ss_pred             CcHHHHHHHHh-CCcc
Confidence              468888875 6543

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.90  E-value=1.5e-22  Score=208.90  Aligned_cols=184  Identities=16%  Similarity=0.245  Sum_probs=159.1

Q ss_pred             HHHHHHHHHHhchhhhcCCCCCCChHHHHHHHc--CCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcC------CHHH
Q 013339            3 VADIVKELLEARQEFAWKKDLNGHTPLHLSCSK--GHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKG------RINI   74 (445)
Q Consensus         3 ~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~--g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G------~~~i   74 (445)
                      ..|+++.|++.+.+++..  ..|.||||.++..  ++.++|+.|+++|++++. ++ .+.||||.|+..+      +.++
T Consensus        15 ~~~~v~~LL~~GadvN~~--~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~-~~-~~~tpL~~a~~~~~~~~~~~~~i   90 (494)
T PHA02989         15 DKNALEFLLRTGFDVNEE--YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNY-KG-YIETPLCAVLRNREITSNKIKKI   90 (494)
T ss_pred             cHHHHHHHHHcCCCcccc--cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccC-CC-CCCCcHHHHHhccCcchhhHHHH
Confidence            468999999999998754  5699999876654  379999999999999986 44 6799999998754      4789


Q ss_pred             HHHHHhcCCCccccccccCcchHhHHHHc---CCHHHHHHHHHhcCccccc-CCCCCCCCcHHHHHHhC--CcHHHHHHH
Q 013339           75 IDEILSLNLQSAEMRTIHGETVLHLTVKN---NQYEAVKYLMETLNITKLA-NMPDNDGNTILHLATAG--KLTTMVIYL  148 (445)
Q Consensus        75 v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~-n~~d~~g~T~LHlA~~~--~~~~iv~~L  148 (445)
                      ++.|+++| .+++.+|..|.||||.|+..   |+.+++++|+++   |+++ +.+|..|+||||+|+..  ++.+++++|
T Consensus        91 v~~Ll~~G-adin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~---Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~L  166 (494)
T PHA02989         91 VKLLLKFG-ADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSK---GINVNDVKNSRGYNLLHMYLESFSVKKDVIKIL  166 (494)
T ss_pred             HHHHHHCC-CCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHC---CCCcccccCCCCCCHHHHHHHhccCCHHHHHHH
Confidence            99999999 56888999999999998765   678999999998   7888 78999999999998764  589999999


Q ss_pred             HhcCCCccc-cccCCCCHHHHHhhhccccchhcHHHHHHHhcCcccC
Q 013339          149 LKLGVDVNA-INRKGYTALDVVESDASNSGALQIVPALEEAGARRCD  194 (445)
Q Consensus       149 l~~g~~~~~-~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~~  194 (445)
                      +++|++++. .|..|.||++++...+...++.+++++|++.|++...
T Consensus       167 l~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~  213 (494)
T PHA02989        167 LSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIET  213 (494)
T ss_pred             HHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccc
Confidence            999999998 6889999999987777777889999999999987543

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=1.2e-22  Score=187.71  Aligned_cols=163  Identities=26%  Similarity=0.345  Sum_probs=141.6

Q ss_pred             cCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHc-----CCHHHHHHHHhcCCCccccc-ccc
Q 013339           19 WKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIK-----GRINIIDEILSLNLQSAEMR-TIH   92 (445)
Q Consensus        19 ~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~-----G~~~iv~~Ll~~~~~~~~~~-~~~   92 (445)
                      +.-|.+|+|+||||+.++++++|+.||+.|.--...+|+-|+||+++|+..     .+.++|..|...+.  ++.+ ...
T Consensus       262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn--VNaKAsQ~  339 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD--VNAKASQH  339 (452)
T ss_pred             hhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccC--cchhhhhh
Confidence            466999999999999999999999999988544455899999999999863     46789999999873  3333 347


Q ss_pred             CcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHH-hcCCCccccccCCCCHHHHHhh
Q 013339           93 GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLL-KLGVDVNAINRKGYTALDVVES  171 (445)
Q Consensus        93 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll-~~g~~~~~~n~~G~Tpl~~a~~  171 (445)
                      |+|+|++|+.+|+.++|+.|+..   ++++|.+|.+|.|+|++|+.+||.+++++|| ..++|+...|.+|.|+|.+   
T Consensus       340 gQTALMLAVSHGr~d~vk~LLac---gAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~I---  413 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLAC---GADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSI---  413 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHc---cCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhh---
Confidence            99999999999999999999876   8999999999999999999999999999999 7899999999999999999   


Q ss_pred             hccccchhcHHHHHHHhcC
Q 013339          172 DASNSGALQIVPALEEAGA  190 (445)
Q Consensus       172 ~a~~~~~~~i~~~L~~~ga  190 (445)
                       +-..++.+|.-+|..+.-
T Consensus       414 -Aleagh~eIa~mlYa~~n  431 (452)
T KOG0514|consen  414 -ALEAGHREIAVMLYAHMN  431 (452)
T ss_pred             -HHhcCchHHHHHHHHHHH
Confidence             556677788877765443

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.88  E-value=6.7e-22  Score=215.01  Aligned_cols=162  Identities=28%  Similarity=0.327  Sum_probs=146.4

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHH
Q 013339           22 DLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTV  101 (445)
Q Consensus        22 d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~  101 (445)
                      +.++.++||.||..|+.++++.|++.|++++. .|.+|+||||+||..|+.++++.|++++ .+++.+|.+|.||||.|+
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~-~d~~G~TpLh~Aa~~g~~~~v~~Ll~~g-adin~~d~~G~TpL~~A~  599 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDPDI-GDSKGRTPLHIAASKGYEDCVLVLLKHA-CNVHIRDANGNTALWNAI  599 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcChHHHHHHHHhcC-CCCCCcCCCCCCHHHHHH
Confidence            44578999999999999999999999999977 8999999999999999999999999987 678889999999999999


Q ss_pred             HcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcH
Q 013339          102 KNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQI  181 (445)
Q Consensus       102 ~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i  181 (445)
                      ..|+.+++++|++.   +...  .+..|.++||.|+..|+.++++.|+++|+++|.+|.+|.||||+    |...++.++
T Consensus       600 ~~g~~~iv~~L~~~---~~~~--~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~----A~~~g~~~i  670 (823)
T PLN03192        600 SAKHHKIFRILYHF---ASIS--DPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQV----AMAEDHVDM  670 (823)
T ss_pred             HhCCHHHHHHHHhc---Cccc--CcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHH----HHHCCcHHH
Confidence            99999999999976   2222  24567899999999999999999999999999999999999999    556678899


Q ss_pred             HHHHHHhcCcccC
Q 013339          182 VPALEEAGARRCD  194 (445)
Q Consensus       182 ~~~L~~~ga~~~~  194 (445)
                      +++|+++|++...
T Consensus       671 v~~Ll~~GAdv~~  683 (823)
T PLN03192        671 VRLLIMNGADVDK  683 (823)
T ss_pred             HHHHHHcCCCCCC
Confidence            9999999987653

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.86  E-value=3.4e-21  Score=169.27  Aligned_cols=141  Identities=20%  Similarity=0.249  Sum_probs=123.0

Q ss_pred             CCCCCCChHHHHHHHcCCH----HHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHH---HHHHHhcCCCcccccc-c
Q 013339           20 KKDLNGHTPLHLSCSKGHL----EITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINI---IDEILSLNLQSAEMRT-I   91 (445)
Q Consensus        20 ~~d~~G~TpLH~Aa~~g~~----~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~i---v~~Ll~~~~~~~~~~~-~   91 (445)
                      ..+.++.++||.||+.|+.    ++++.|++.++.++. +|.+|+||||+|+..|+.+.   +++|++.+ ..++.++ .
T Consensus        15 ~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~-~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~G-adin~~d~~   92 (166)
T PHA02743         15 EIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHR-YDHHGRQCTHMVAWYDRANAVMKIELLVNMG-ADINARELG   92 (166)
T ss_pred             hhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhc-cCCCCCcHHHHHHHhCccCHHHHHHHHHHcC-CCCCCCCCC
Confidence            5667888999999999998    666677788888765 89999999999999998654   78999988 5677777 5


Q ss_pred             cCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCC
Q 013339           92 HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYT  164 (445)
Q Consensus        92 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~T  164 (445)
                      .|.||||+|+..|+.+++++|++.  .+..++.+|.+|.||||+|+..++.+++++|+++|++++.++..|..
T Consensus        93 ~g~TpLh~A~~~g~~~iv~~Ll~~--~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~  163 (166)
T PHA02743         93 TGNTLLHIAASTKNYELAEWLCRQ--LGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGLS  163 (166)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhc--cCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCcc
Confidence            899999999999999999999953  16678899999999999999999999999999999999999887753

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.86  E-value=6.5e-22  Score=188.41  Aligned_cols=166  Identities=30%  Similarity=0.392  Sum_probs=148.3

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHhhc-CCCCCCC-------CCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccc
Q 013339           20 KKDLNGHTPLHLSCSKGHLEITRELLKL-DPDLSSL-------PDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTI   91 (445)
Q Consensus        20 ~~d~~G~TpLH~Aa~~g~~~iv~~LL~~-~~~~~~~-------~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~   91 (445)
                      ..+.+|.|||-+||++||.++|++|+++ ++++...       ..-+|-+||..|+..||.++|+.|++++ ...+..+.
T Consensus        37 ~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~g-a~VN~tT~  115 (615)
T KOG0508|consen   37 GEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRG-ASVNDTTR  115 (615)
T ss_pred             ccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhc-Cccccccc
Confidence            4456789999999999999999999994 3332110       2346789999999999999999999999 77887787


Q ss_pred             cCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhh
Q 013339           92 HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVES  171 (445)
Q Consensus        92 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~  171 (445)
                      ...|||.-||.-|+.++++||+++   +++++..|..|.|.||+|+..|+.+|+++|++.|+|+|.++..|.|+||.   
T Consensus       116 TNStPLraACfDG~leivKyLvE~---gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~---  189 (615)
T KOG0508|consen  116 TNSTPLRAACFDGHLEIVKYLVEH---GADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHD---  189 (615)
T ss_pred             cCCccHHHHHhcchhHHHHHHHHc---CCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHh---
Confidence            888999999999999999999998   88899999999999999999999999999999999999999999999999   


Q ss_pred             hccccchhcHHHHHHHhcCccc
Q 013339          172 DASNSGALQIVPALEEAGARRC  193 (445)
Q Consensus       172 ~a~~~~~~~i~~~L~~~ga~~~  193 (445)
                       ....++.+++++|+.+|+...
T Consensus       190 -caEsG~vdivq~Ll~~ga~i~  210 (615)
T KOG0508|consen  190 -CAESGSVDIVQLLLKHGAKID  210 (615)
T ss_pred             -hhhcccHHHHHHHHhCCceee
Confidence             677889999999999998754

>PHA02917 ankyrin-like protein; Provisional

Probab=99.86  E-value=5.3e-21  Score=201.19  Aligned_cols=183  Identities=22%  Similarity=0.184  Sum_probs=147.1

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcC-----------------------------------CHHHHHHHhh
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKG-----------------------------------HLEITRELLK   46 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g-----------------------------------~~~iv~~LL~   46 (445)
                      |+.|+|+.|++.+.+++ ..|..|+||||+|+..|                                   +.++|++|++
T Consensus        46 ~~~~~v~~Ll~~ga~v~-~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~  124 (661)
T PHA02917         46 NNVEVVKLLLDSGTNPL-HKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVE  124 (661)
T ss_pred             CcHHHHHHHHHCCCCcc-ccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHH
Confidence            56899999999998886 77889999999888654                                   4567888888


Q ss_pred             cCCCCCCCCCCCCccHHHHHH--HcCCHHHHHHHHhcCCCccccccc---cC-----------cchHhHHHH--------
Q 013339           47 LDPDLSSLPDNEGRTPLHWAA--IKGRINIIDEILSLNLQSAEMRTI---HG-----------ETVLHLTVK--------  102 (445)
Q Consensus        47 ~~~~~~~~~d~~G~TpLh~Aa--~~G~~~iv~~Ll~~~~~~~~~~~~---~g-----------~t~Lh~A~~--------  102 (445)
                      +|++++. +|.+|+||||.|+  ..|+.+++++|+++|. .++.+|.   .|           .||||+|+.        
T Consensus       125 ~Gadin~-~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga-~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~  202 (661)
T PHA02917        125 HGFDLSV-KCENHRSVIENYVMTDDPVPEIIDLFIENGC-SVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESD  202 (661)
T ss_pred             cCCCCCc-cCCCCccHHHHHHHccCCCHHHHHHHHHcCC-CccccccccccccccccccccccccHHHHHHhhccccccc
Confidence            8888876 8999999999654  5789999999999984 4433332   23           699999986        


Q ss_pred             ---cCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcH--HHHHHHHhcCCCcc----ccccCCCCHHHHHhhhc
Q 013339          103 ---NNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLT--TMVIYLLKLGVDVN----AINRKGYTALDVVESDA  173 (445)
Q Consensus       103 ---~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~--~iv~~Ll~~g~~~~----~~n~~G~Tpl~~a~~~a  173 (445)
                         +++.+++++|++.   ++++|.+|.+|+||||+|+..++.  +++++|++ |++++    ..|..|.+|++++.-..
T Consensus       203 ~~~~~~~eiv~~Li~~---Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~  278 (661)
T PHA02917        203 TRAYVRPEVVKCLINH---GIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLN  278 (661)
T ss_pred             ccccCcHHHHHHHHHC---CCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHH
Confidence               5689999999998   889999999999999999999975  79999975 88775    45667888777754111


Q ss_pred             -----cccchhcHHHHHHHhcCc
Q 013339          174 -----SNSGALQIVPALEEAGAR  191 (445)
Q Consensus       174 -----~~~~~~~i~~~L~~~ga~  191 (445)
                           ......+++++|+++|+.
T Consensus       279 ~~~~~~~~v~~~iv~~Li~~Ga~  301 (661)
T PHA02917        279 SDYRYNKDVDLDLVKLFLENGKP  301 (661)
T ss_pred             hhccccccchHHHHHHHHhCCCC
Confidence                 112367899999999985

>PHA02741 hypothetical protein; Provisional

Probab=99.86  E-value=7.8e-21  Score=167.63  Aligned_cols=134  Identities=20%  Similarity=0.306  Sum_probs=108.6

Q ss_pred             hhcCCCCCCChHHHHHHHcCCHHHHHHHhhc------CCCCCCCCCCCCccHHHHHHHcCC----HHHHHHHHhcCCCcc
Q 013339           17 FAWKKDLNGHTPLHLSCSKGHLEITRELLKL------DPDLSSLPDNEGRTPLHWAAIKGR----INIIDEILSLNLQSA   86 (445)
Q Consensus        17 ~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~------~~~~~~~~d~~G~TpLh~Aa~~G~----~~iv~~Ll~~~~~~~   86 (445)
                      +....|..|.||||+|++.|+.++++.|+..      +++++. +|..|+||||+|+..|+    .++++.|++.+ ..+
T Consensus        13 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~-~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~g-adi   90 (169)
T PHA02741         13 MIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNA-TDDAGQMCIHIAAEKHEAQLAAEIIDHLIELG-ADI   90 (169)
T ss_pred             HhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhc-cCCCCCcHHHHHHHcCChHHHHHHHHHHHHcC-CCC
Confidence            3446788899999999999999999988642      455554 78899999999999998    47888888887 455


Q ss_pred             ccccc-cCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCC
Q 013339           87 EMRTI-HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVD  154 (445)
Q Consensus        87 ~~~~~-~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~  154 (445)
                      +.++. +|+||||+|+..++.+++++|+...  +..++.+|.+|.||||+|+..++.+++++|++.++.
T Consensus        91 n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~--g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         91 NAQEMLEGDTALHLAAHRRDHDLAEWLCCQP--GIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCC--CCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            66664 8999999999999999999988632  456788888999999999999999999888876544

>PHA02795 ankyrin-like protein; Provisional

Probab=99.85  E-value=9.5e-21  Score=186.45  Aligned_cols=174  Identities=13%  Similarity=0.040  Sum_probs=146.4

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCC-----CCCCccHHHHHHHcCCHHHHH
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLP-----DNEGRTPLHWAAIKGRINIID   76 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~-----d~~G~TpLh~Aa~~G~~~iv~   76 (445)
                      |+.|+|+.|++++.+++.   .++.||||.|+..|+.++++.|+++|++.....     +..|.||+|.|+..++.++++
T Consensus       129 n~~eiV~~LI~~GADIn~---~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve  205 (437)
T PHA02795        129 VEIDIVDFMVDHGAVIYK---IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYK  205 (437)
T ss_pred             CCHHHHHHHHHCCCCCCC---CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHH
Confidence            688999999999999863   356899999999999999999999997543322     234789999999999999999


Q ss_pred             HHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCC--------cHHHHHHH
Q 013339           77 EILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGK--------LTTMVIYL  148 (445)
Q Consensus        77 ~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~--------~~~iv~~L  148 (445)
                      .|++++ ...+.+|..|.||||+|+.+|+.+++++|+++   ++.+|.+|.+|.||||+|+..|        +.+++++|
T Consensus       206 ~LIs~G-ADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~---GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelL  281 (437)
T PHA02795        206 LCIPYI-EDINQLDAGGRTLLYRAIYAGYIDLVSWLLEN---GANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEIL  281 (437)
T ss_pred             HHHhCc-CCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHH
Confidence            999998 67889999999999999999999999999988   8899999999999999999988        46999999


Q ss_pred             HhcCCCccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCc
Q 013339          149 LKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGAR  191 (445)
Q Consensus       149 l~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~  191 (445)
                      +++|++++.....+   +..      ...+.++++.+++....
T Consensus       282 L~~gadI~~~~~~~---~~~------~~~n~~~ik~lI~y~~~  315 (437)
T PHA02795        282 LREPLSIDCIKLAI---LNN------TIENHDVIKLCIKYFMM  315 (437)
T ss_pred             HhCCCCCCchhHHh---hhc------ccchHHHHHHHHHHHHh
Confidence            99999987754322   111      11255688888776643

>PHA02730 ankyrin-like protein; Provisional

Probab=99.84  E-value=4.1e-20  Score=190.27  Aligned_cols=109  Identities=24%  Similarity=0.269  Sum_probs=78.7

Q ss_pred             HHHHHHHHhchhhhcCCCCCCChHHHHHHHcC---CHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcC--CHHHHHHHH
Q 013339            5 DIVKELLEARQEFAWKKDLNGHTPLHLSCSKG---HLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKG--RINIIDEIL   79 (445)
Q Consensus         5 d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g---~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G--~~~iv~~Ll   79 (445)
                      +.++..++...++++.+|.+|+||||+|+..|   +.++|++||++|++++. +|.+|+||||+|+..|  +.++++.|+
T Consensus        21 ~~~~~~~~~~~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~-kD~~G~TPLh~Aa~~~~~~~eIv~~Ll   99 (672)
T PHA02730         21 KKIKLEIETCHNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLC-RNNEGLTPLGVYSKRKYVKSQIVHLLI   99 (672)
T ss_pred             HHHHHHHHHhcchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcc-cCCCCCChHHHHHHcCCCcHHHHHHHH
Confidence            34566666666777788888999999998886   48899999999988876 7888999999888866  688888888


Q ss_pred             hcCC-CccccccccCcchHhHHHH--cCCHHHHHHHHH
Q 013339           80 SLNL-QSAEMRTIHGETVLHLTVK--NNQYEAVKYLME  114 (445)
Q Consensus        80 ~~~~-~~~~~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~  114 (445)
                      +.+. ...+..+..+.+|||.++.  +++.+++++|+.
T Consensus       100 ~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~  137 (672)
T PHA02730        100 SSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIV  137 (672)
T ss_pred             hcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHH
Confidence            8753 2223344445555555555  555566666653

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.84  E-value=9.9e-21  Score=164.47  Aligned_cols=135  Identities=20%  Similarity=0.271  Sum_probs=107.4

Q ss_pred             hhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCC--C----CCCCCCCCCccHHHHHHHcCCHH---HHHHHHhcCCCccc
Q 013339           17 FAWKKDLNGHTPLHLSCSKGHLEITRELLKLDP--D----LSSLPDNEGRTPLHWAAIKGRIN---IIDEILSLNLQSAE   87 (445)
Q Consensus        17 ~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~--~----~~~~~d~~G~TpLh~Aa~~G~~~---iv~~Ll~~~~~~~~   87 (445)
                      +....|.+|.||||+||..|+.  ++.+...+.  +    ....+|.+|+||||+|+..|+.+   +++.|++.+ ...+
T Consensus         9 ~~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~g-adin   85 (154)
T PHA02736          9 FASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWG-ADIN   85 (154)
T ss_pred             HHHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcC-CCcc
Confidence            4457888999999999999984  333332221  1    12236889999999999999874   678889888 4566


Q ss_pred             ccc-ccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCcc
Q 013339           88 MRT-IHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVN  156 (445)
Q Consensus        88 ~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~  156 (445)
                      .++ ..|+||||+|+..|+.+++++|+...  +.+++.+|..|.||||+|+..++.+++++|++.|++.+
T Consensus        86 ~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~--g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         86 GKERVFGNTPLHIAVYTQNYELATWLCNQP--GVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhCC--CCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            676 48999999999999999999998632  56788899999999999999999999999999988765

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.84  E-value=1.5e-20  Score=200.68  Aligned_cols=176  Identities=31%  Similarity=0.416  Sum_probs=140.0

Q ss_pred             HHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCcc
Q 013339            7 VKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA   86 (445)
Q Consensus         7 v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~   86 (445)
                      ...+++.+.+++ .....|.||||+|+..||.++++.|++.++.... ..+.|.||||.|+..+.+.+++.+++++ ...
T Consensus       457 ~~~l~~~g~~~n-~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~-~~~~~l~~lhla~~~~~v~~~~~l~~~g-a~v  533 (1143)
T KOG4177|consen  457 ARLLLQYGADPN-AVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNL-DAKKGLTPLHLAADEDTVKVAKILLEHG-ANV  533 (1143)
T ss_pred             hhhHhhcCCCcc-hhccccCcchhhhhccCCchHHHHhhhcCCccCc-cchhccchhhhhhhhhhHHHHHHHhhcC-Cce
Confidence            333444443333 4555666777777777777666666666644433 4556667777777777777777777666 566


Q ss_pred             ccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHH
Q 013339           87 EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTAL  166 (445)
Q Consensus        87 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl  166 (445)
                      +.++.+|.||||.|+.+|+.++|++|+++   +++++.+|+.|.||||.|+..|+.+++.+|+++|+++|..|.+|.|||
T Consensus       534 ~~~~~r~~TpLh~A~~~g~v~~VkfLLe~---gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL  610 (1143)
T KOG4177|consen  534 DLRTGRGYTPLHVAVHYGNVDLVKFLLEH---GADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPL  610 (1143)
T ss_pred             ehhcccccchHHHHHhcCCchHHHHhhhC---CccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchh
Confidence            77788899999999999999999999999   889999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhccccchhcHHHHHHHhcCcc
Q 013339          167 DVVESDASNSGALQIVPALEEAGARR  192 (445)
Q Consensus       167 ~~a~~~a~~~~~~~i~~~L~~~ga~~  192 (445)
                      ++    +...+..++.+.|...++..
T Consensus       611 ~i----A~~lg~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  611 HI----AVRLGYLSVVKLLKVVTATP  632 (1143)
T ss_pred             HH----HHHhcccchhhHHHhccCcc
Confidence            99    66778888999999888874

>PHA02741 hypothetical protein; Provisional

Probab=99.83  E-value=6.3e-20  Score=161.87  Aligned_cols=141  Identities=21%  Similarity=0.303  Sum_probs=120.1

Q ss_pred             CHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcC-----CCccccccccCcchHhHHHHcCC----HH
Q 013339           37 HLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLN-----LQSAEMRTIHGETVLHLTVKNNQ----YE  107 (445)
Q Consensus        37 ~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~-----~~~~~~~~~~g~t~Lh~A~~~g~----~~  107 (445)
                      +..|++.++.       .+|..|.||||+|+..|+.++++.|+...     +..++.+|..|.||||+|+..|+    .+
T Consensus         6 ~~~~~~~~~~-------~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~   78 (169)
T PHA02741          6 FMTCLEEMIA-------EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAE   78 (169)
T ss_pred             HHHHHHHHhh-------ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHH
Confidence            4456666553       26788999999999999999999986532     24578889999999999999999    58


Q ss_pred             HHHHHHHhcCcccccCCCCC-CCCcHHHHHHhCCcHHHHHHHHh-cCCCccccccCCCCHHHHHhhhccccchhcHHHHH
Q 013339          108 AVKYLMETLNITKLANMPDN-DGNTILHLATAGKLTTMVIYLLK-LGVDVNAINRKGYTALDVVESDASNSGALQIVPAL  185 (445)
Q Consensus       108 ~v~~Ll~~~~~~~~~n~~d~-~g~T~LHlA~~~~~~~iv~~Ll~-~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L  185 (445)
                      ++++|++.   +..+|.+|. +|+||||+|+..++.+++++|++ .|++++..|.+|+|||++    +...++.+++++|
T Consensus        79 ii~~Ll~~---gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~----A~~~~~~~iv~~L  151 (169)
T PHA02741         79 IIDHLIEL---GADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFEL----AIDNEDVAMMQIL  151 (169)
T ss_pred             HHHHHHHc---CCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHH----HHHCCCHHHHHHH
Confidence            88999887   778899885 99999999999999999999996 699999999999999999    4555677899999


Q ss_pred             HHhcCc
Q 013339          186 EEAGAR  191 (445)
Q Consensus       186 ~~~ga~  191 (445)
                      ++.++.
T Consensus       152 ~~~~~~  157 (169)
T PHA02741        152 REIVAT  157 (169)
T ss_pred             HHHHHH
Confidence            988765

>PHA02730 ankyrin-like protein; Provisional

Probab=99.83  E-value=1.2e-19  Score=186.76  Aligned_cols=179  Identities=17%  Similarity=0.159  Sum_probs=145.7

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcC--CHHHHHHHhhcCCCC--CCCCCCCCccHHHHHHH--cCCHHHH
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKG--HLEITRELLKLDPDL--SSLPDNEGRTPLHWAAI--KGRINII   75 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g--~~~iv~~LL~~~~~~--~~~~d~~G~TpLh~Aa~--~G~~~iv   75 (445)
                      ++.|+|+.|++++++++ .+|..|+||||+|+..|  +.|+|+.|++.|++.  .. .+..+.+|||.++.  +++.+++
T Consensus        55 ~~~eivklLLs~GAdin-~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~-~~~~~d~~l~~y~~s~n~~~~~v  132 (672)
T PHA02730         55 TDIKIVRLLLSRGVERL-CRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNEL-TSNINDFDLYSYMSSDNIDLRLL  132 (672)
T ss_pred             CcHHHHHHHHhCCCCCc-ccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCccc-ccccCCchHHHHHHhcCCcHHHH
Confidence            35899999999999987 78999999999999977  799999999996544  54 67778999999998  9999999


Q ss_pred             HHHHhcCCCcccccc-----ccCcchHhHHHHcCCHHHHHHHHHhcCcccccC-------CCCCCC-CcHHHHHH-----
Q 013339           76 DEILSLNLQSAEMRT-----IHGETVLHLTVKNNQYEAVKYLMETLNITKLAN-------MPDNDG-NTILHLAT-----  137 (445)
Q Consensus        76 ~~Ll~~~~~~~~~~~-----~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n-------~~d~~g-~T~LHlA~-----  137 (445)
                      ++|+..+...++...     ..|.+|++++..+++.++|++|+++   ++.++       ..|..+ .|.||++.     
T Consensus       133 k~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~---g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~  209 (672)
T PHA02730        133 KYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKS---ECYSTGYVFRSCMYDSDRCKNSLHYYILSHRE  209 (672)
T ss_pred             HHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHc---CCcccccccccccccCCccchhHHHHHHhhhh
Confidence            999974433433332     2789999999999999999999998   55453       233344 46666443     


Q ss_pred             -hCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHHHHH
Q 013339          138 -AGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEE  187 (445)
Q Consensus       138 -~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~  187 (445)
                       ..+..+++++|+++|+++|.+|..|.||||+..  +...++.+++++|++
T Consensus       210 ~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~--~~~~~~~eiv~~Li~  258 (672)
T PHA02730        210 SESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYW--SCSTIDIEIVKLLIK  258 (672)
T ss_pred             hhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH--HcCcccHHHHHHHHh
Confidence             456899999999999999999999999999622  445566899999998

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.83  E-value=6.4e-20  Score=153.28  Aligned_cols=142  Identities=27%  Similarity=0.301  Sum_probs=129.6

Q ss_pred             HHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHH
Q 013339           28 PLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYE  107 (445)
Q Consensus        28 pLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~  107 (445)
                      -+.+|+..+.+..|+.||+..++..+.+|.+|+||||-|+.+|+.+|++.|+..+ ...+.++..|+||||.|++-++.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~g-An~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSG-ANKEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHcc-CCcccccccCccchhhhhcccchh
Confidence            4689999999999999999999988889999999999999999999999999998 678889999999999999999999


Q ss_pred             HHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcH-HHHHHHH-hcCCCccccccCCCCHHHHHhhhc
Q 013339          108 AVKYLMETLNITKLANMPDNDGNTILHLATAGKLT-TMVIYLL-KLGVDVNAINRKGYTALDVVESDA  173 (445)
Q Consensus       108 ~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~-~iv~~Ll-~~g~~~~~~n~~G~Tpl~~a~~~a  173 (445)
                      ++..|+++   ++++|++.....||||+|+...+. ..+.+|+ ++++++..+|+.+.||+++|.+..
T Consensus       145 va~~LLqh---gaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  145 VAGRLLQH---GADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             HHHHHHhc---cCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            99999998   889999999999999999987654 4556666 899999999999999999976554

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.82  E-value=1.2e-20  Score=163.28  Aligned_cols=175  Identities=25%  Similarity=0.314  Sum_probs=139.4

Q ss_pred             HHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCC-------------------------------CC
Q 013339            3 VADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDP-------------------------------DL   51 (445)
Q Consensus         3 ~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~-------------------------------~~   51 (445)
                      +.|++.....-+|+-+...|.+|++++|.|+-+|+...+..+|.++.                               .+
T Consensus        74 nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n~V  153 (296)
T KOG0502|consen   74 NSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNNKV  153 (296)
T ss_pred             CcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhccc
Confidence            45566666666666555666666666666666666555555444332                               22


Q ss_pred             CCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCc
Q 013339           52 SSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNT  131 (445)
Q Consensus        52 ~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T  131 (445)
                      +. .|+.|.|||.+|+..|++++|++|++.| ..+....+..+++|.+|++.|..++|++|+.+   +.++|..|.+|-|
T Consensus       154 N~-~De~GfTpLiWAaa~G~i~vV~fLL~~G-Adp~~lgk~resALsLAt~ggytdiV~lLL~r---~vdVNvyDwNGgT  228 (296)
T KOG0502|consen  154 NA-CDEFGFTPLIWAAAKGHIPVVQFLLNSG-ADPDALGKYRESALSLATRGGYTDIVELLLTR---EVDVNVYDWNGGT  228 (296)
T ss_pred             cC-ccccCchHhHHHHhcCchHHHHHHHHcC-CChhhhhhhhhhhHhHHhcCChHHHHHHHHhc---CCCcceeccCCCc
Confidence            23 6999999999999999999999999998 56777788899999999999999999999987   7789999999999


Q ss_pred             HHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHHHHH
Q 013339          132 ILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEE  187 (445)
Q Consensus       132 ~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~  187 (445)
                      ||-+|++.++.+|++.|+..|++++..+..|++++++|.    ..++. +++..++
T Consensus       229 pLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAV----alGyr-~Vqqvie  279 (296)
T KOG0502|consen  229 PLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAV----ALGYR-IVQQVIE  279 (296)
T ss_pred             eeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHH----HhhhH-HHHHHHH
Confidence            999999999999999999999999999999999999954    44444 4444444

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.82  E-value=3.6e-19  Score=168.80  Aligned_cols=157  Identities=17%  Similarity=0.065  Sum_probs=130.5

Q ss_pred             cCCCCCCCh-HHHHHHHcCCHHHHHHHhhcCCCCCCC---CCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccc-cccC
Q 013339           19 WKKDLNGHT-PLHLSCSKGHLEITRELLKLDPDLSSL---PDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMR-TIHG   93 (445)
Q Consensus        19 ~~~d~~G~T-pLH~Aa~~g~~~iv~~LL~~~~~~~~~---~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~-~~~g   93 (445)
                      +.+|+.|+| |||.|+..|+.++++.|+++|++++..   .+..|.||||+|+..|+.++++.|+++| ++++.+ +..|
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~G-ADVN~~~~~~g  104 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYG-ADVNRYAEEAK  104 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcCcccCCCC
Confidence            467888776 566667779999999999999999763   2568999999999999999999999998 466654 5679


Q ss_pred             cchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhc
Q 013339           94 ETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDA  173 (445)
Q Consensus        94 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a  173 (445)
                      .||||.|+..|+.+++++|+..   ++.++.+|.+|.||||+|+..++..++..+..  ..   .+..+.+|..+.    
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~~---GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~----  172 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLSY---GADINIQTNDMVTPIELALMICNNFLAFMICD--NE---ISNFYKHPKKIL----  172 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHhCChhHHHHhcC--Cc---ccccccChhhhh----
Confidence            9999999999999999999988   78899999999999999999888888755543  22   466777888763    


Q ss_pred             cccchhcHHHHHHHhcCc
Q 013339          174 SNSGALQIVPALEEAGAR  191 (445)
Q Consensus       174 ~~~~~~~i~~~L~~~ga~  191 (445)
                         .+.+++++|+.++..
T Consensus       173 ---~n~ei~~~Lish~vl  187 (300)
T PHA02884        173 ---INFDILKILVSHFIL  187 (300)
T ss_pred             ---ccHHHHHHHHHHHHH
Confidence               246788999888763

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.82  E-value=5.5e-20  Score=178.64  Aligned_cols=164  Identities=30%  Similarity=0.414  Sum_probs=135.4

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |.++=++.|+..+...+ ..+.+|.|+||-||...+.+||++|+++|++++. .|.+||||||.|+..|+..++++++++
T Consensus        51 ~d~~ev~~ll~~ga~~~-~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~-~d~e~wtPlhaaascg~~~i~~~li~~  128 (527)
T KOG0505|consen   51 GDLEEVRKLLNRGASPN-LCNVDGLTALHQACIDDNLEMVKFLVENGANVNA-QDNEGWTPLHAAASCGYLNIVEYLIQH  128 (527)
T ss_pred             ccHHHHHHHhccCCCcc-ccCCccchhHHHHHhcccHHHHHHHHHhcCCccc-cccccCCcchhhcccccHHHHHHHHHh
Confidence            35677888998886664 7889999999999999999999999999999988 899999999999999999999999997


Q ss_pred             CCCcccc----------------------------------------------------------ccccCcchHhHHHHc
Q 013339           82 NLQSAEM----------------------------------------------------------RTIHGETVLHLTVKN  103 (445)
Q Consensus        82 ~~~~~~~----------------------------------------------------------~~~~g~t~Lh~A~~~  103 (445)
                      +......                                                          ++..|.|.||+|+.+
T Consensus       129 gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~  208 (527)
T KOG0505|consen  129 GANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAAN  208 (527)
T ss_pred             hhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhh
Confidence            7432211                                                          123477888888888


Q ss_pred             CCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHh
Q 013339          104 NQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVE  170 (445)
Q Consensus       104 g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~  170 (445)
                      |..++.++|++.   +..++.+|.+|+||||.|+..+..+++++|+++|++++..+..|.||++++.
T Consensus       209 Gy~e~~~lLl~a---g~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~d  272 (527)
T KOG0505|consen  209 GYTEVAALLLQA---GYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVAD  272 (527)
T ss_pred             hHHHHHHHHHHh---ccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchh
Confidence            888888888877   6667778888888888888888888888777888888888888888888754

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.81  E-value=2.2e-20  Score=199.39  Aligned_cols=186  Identities=31%  Similarity=0.391  Sum_probs=152.5

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcC-CHHHHHHHHh
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKG-RINIIDEILS   80 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G-~~~iv~~Ll~   80 (445)
                      +..+.++.++..+...+ ..++.|.||||.|+..++.++|+.+++++++.+. .+..|+||+|+|+..| ..+++..+++
T Consensus       385 g~~~~v~Lll~~ga~~~-~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~-~~~lG~T~lhvaa~~g~~~~~~~~l~~  462 (1143)
T KOG4177|consen  385 GRVSVVELLLEAGADPN-SAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNA-KAKLGYTPLHVAAKKGRYLQIARLLLQ  462 (1143)
T ss_pred             CchhHHHhhhhccCCcc-cCCCCCcceeeehhhccCcceEEEEeccCCChhh-HhhcCCChhhhhhhcccHhhhhhhHhh
Confidence            34677788888877744 7778888888888888888888888888888766 7888888888888888 6677767777


Q ss_pred             cCCCccccccccCcchHhHHHHcCCHHHHHHHHHhc------------------------------CcccccCCCCCCCC
Q 013339           81 LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL------------------------------NITKLANMPDNDGN  130 (445)
Q Consensus        81 ~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~------------------------------~~~~~~n~~d~~g~  130 (445)
                      .+ ...+.....|.||||+|+..|+.+++..|++..                              ..+..++.++.+|+
T Consensus       463 ~g-~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~  541 (1143)
T KOG4177|consen  463 YG-ADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGY  541 (1143)
T ss_pred             cC-CCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhccccc
Confidence            66 667777778888888888888888888777632                              12456678889999


Q ss_pred             cHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCcccC
Q 013339          131 TILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCD  194 (445)
Q Consensus       131 T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~~  194 (445)
                      ||||.|+..|+.++|++|+++|++++.+++.|+||||.    +...++.+|+.+|.++|+.+..
T Consensus       542 TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~----Aa~~G~~~i~~LLlk~GA~vna  601 (1143)
T KOG4177|consen  542 TPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQ----AAQQGHNDIAELLLKHGASVNA  601 (1143)
T ss_pred             chHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhH----HHHcChHHHHHHHHHcCCCCCc
Confidence            99999999999999999999999999999999999999    5556688999999999998764

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.80  E-value=2.8e-19  Score=193.25  Aligned_cols=180  Identities=22%  Similarity=0.192  Sum_probs=138.4

Q ss_pred             CHHHHHHHHHHh--chhhhcCCCCCCChHHH-HHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHH----H
Q 013339            2 HVADIVKELLEA--RQEFAWKKDLNGHTPLH-LSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRIN----I   74 (445)
Q Consensus         2 ~~~d~v~~Ll~~--~~~~~~~~d~~G~TpLH-~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~----i   74 (445)
                      |..+.++.+++.  +.++ +..|..|+|||| .|+..++.++++.|++.+.     .+..|.||||.|+. |+.+    +
T Consensus        28 g~~~~v~~lL~~~~~~~i-n~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A~~-~~~~~v~~l  100 (743)
T TIGR00870        28 GDLASVYRDLEEPKKLNI-NCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAISL-EYVDAVEAI  100 (743)
T ss_pred             CCHHHHHHHhccccccCC-CCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHHHh-ccHHHHHHH
Confidence            567889999988  3344 367889999999 8999999999999999886     57789999999987 3333    3


Q ss_pred             HHHHHhcCCCc---------cccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCC--------------CCCCc
Q 013339           75 IDEILSLNLQS---------AEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPD--------------NDGNT  131 (445)
Q Consensus        75 v~~Ll~~~~~~---------~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d--------------~~g~T  131 (445)
                      ++.+.+..+..         ....+..|.||||+|+.+|+.+++++|+++   ++++|.++              ..|.|
T Consensus       101 l~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~---GAdv~~~~~~~~~~~~~~~~~~~~g~t  177 (743)
T TIGR00870       101 LLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLER---GASVPARACGDFFVKSQGVDSFYHGES  177 (743)
T ss_pred             HHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhC---CCCCCcCcCCchhhcCCCCCccccccc
Confidence            34444433221         111234699999999999999999999997   55565442              35899


Q ss_pred             HHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhcccc-----chhcHHHHHHHhcCc
Q 013339          132 ILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNS-----GALQIVPALEEAGAR  191 (445)
Q Consensus       132 ~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~-----~~~~i~~~L~~~ga~  191 (445)
                      |||.|+..++.+++++|++.|++++..|..|+||+|++.......     ....+.+++++.++.
T Consensus       178 pL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~  242 (743)
T TIGR00870       178 PLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDK  242 (743)
T ss_pred             HHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999976543211     123466667666554

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.80  E-value=1.2e-17  Score=180.58  Aligned_cols=177  Identities=23%  Similarity=0.210  Sum_probs=136.1

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcC---CHHHHHHHhhcCCCC------C---CCCCCCCccHHHHHHHc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKG---HLEITRELLKLDPDL------S---SLPDNEGRTPLHWAAIK   69 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g---~~~iv~~LL~~~~~~------~---~~~d~~G~TpLh~Aa~~   69 (445)
                      ++.|+++.|++.+.     .+..|.||||.|+..+   ..++++.+++.+++.      +   ...+..|.||||+||.+
T Consensus        64 ~~~eiv~lLl~~g~-----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~  138 (743)
T TIGR00870        64 ENLELTELLLNLSC-----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHR  138 (743)
T ss_pred             ChHHHHHHHHhCCC-----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHh
Confidence            46788888888775     5778999999999722   233444444444321      1   11235799999999999


Q ss_pred             CCHHHHHHHHhcCCCccccc--------------cccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHH
Q 013339           70 GRINIIDEILSLNLQSAEMR--------------TIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHL  135 (445)
Q Consensus        70 G~~~iv~~Ll~~~~~~~~~~--------------~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHl  135 (445)
                      |+.++++.|+++|.+ ++.+              ...|+||||.|+..|+.+++++|+++   ++++|.+|..|+||||+
T Consensus       139 ~~~eiVklLL~~GAd-v~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~---gadin~~d~~g~T~Lh~  214 (743)
T TIGR00870       139 QNYEIVKLLLERGAS-VPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSED---PADILTADSLGNTLLHL  214 (743)
T ss_pred             CCHHHHHHHHhCCCC-CCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcC---CcchhhHhhhhhHHHHH
Confidence            999999999999843 3322              13599999999999999999999987   67899999999999999


Q ss_pred             HHhCC---------cHHHHHHHHhcCCCc-------cccccCCCCHHHHHhhhccccchhcHHHHHHHhcCc
Q 013339          136 ATAGK---------LTTMVIYLLKLGVDV-------NAINRKGYTALDVVESDASNSGALQIVPALEEAGAR  191 (445)
Q Consensus       136 A~~~~---------~~~iv~~Ll~~g~~~-------~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~  191 (445)
                      |+..+         ...+.+++++.+++.       +..|++|.||+++    |...++.++.+.|++.+.+
T Consensus       215 A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~----A~~~g~~~l~~lLL~~~~~  282 (743)
T TIGR00870       215 LVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKL----AAKEGRIVLFRLKLAIKYK  282 (743)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhh----hhhcCCccHHHHHHHHHHh
Confidence            99886         234566666555543       6789999999999    6677888899999886543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.80  E-value=5.2e-19  Score=155.38  Aligned_cols=139  Identities=22%  Similarity=0.266  Sum_probs=117.1

Q ss_pred             cCCCCCCCCCCCCccHHHHHHHcCCH----HHHHHHHhcCCCccccccccCcchHhHHHHcCCHHH---HHHHHHhcCcc
Q 013339           47 LDPDLSSLPDNEGRTPLHWAAIKGRI----NIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEA---VKYLMETLNIT  119 (445)
Q Consensus        47 ~~~~~~~~~d~~G~TpLh~Aa~~G~~----~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~---v~~Ll~~~~~~  119 (445)
                      ++.++.. .+.++.++||.||..|+.    +++++|.+.+ ...+.+|.+|+||||+|+.+|+.+.   +++|++.   +
T Consensus         9 ~~~~~~~-~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g-~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~---G   83 (166)
T PHA02743          9 NNLGAVE-IDEDEQNTFLRICRTGNIYELMEVAPFISGDG-HLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNM---G   83 (166)
T ss_pred             cchHHhh-hccCCCcHHHHHHHcCCHHHHHHHHHHHhhcc-hhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHc---C
Confidence            3455544 567888999999999998    4555666665 4567788899999999999988654   7899887   7


Q ss_pred             cccCCCC-CCCCcHHHHHHhCCcHHHHHHHH-hcCCCccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCcccC
Q 013339          120 KLANMPD-NDGNTILHLATAGKLTTMVIYLL-KLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCD  194 (445)
Q Consensus       120 ~~~n~~d-~~g~T~LHlA~~~~~~~iv~~Ll-~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~~  194 (445)
                      ..+|.+| ..|+||||+|+..++.+++++|+ +.|++++.+|..|.||||+    +...++.+++++|+++|++...
T Consensus        84 adin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~----A~~~~~~~iv~~Ll~~ga~~~~  156 (166)
T PHA02743         84 ADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHI----AYKMRDRRMMEILRANGAVCDD  156 (166)
T ss_pred             CCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHH----HHHcCCHHHHHHHHHcCCCCCC
Confidence            8899998 58999999999999999999999 5899999999999999999    4555677899999999987654

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.79  E-value=2.1e-19  Score=155.75  Aligned_cols=145  Identities=22%  Similarity=0.247  Sum_probs=132.6

Q ss_pred             hhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcch
Q 013339           17 FAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETV   96 (445)
Q Consensus        17 ~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~   96 (445)
                      ..+..|+.|.|||.+|++.||+++|+.||+.|+++.. ..+...|+|.+|+..|..+||+.|+.++ .+++.-|.+|.||
T Consensus       152 ~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~-lgk~resALsLAt~ggytdiV~lLL~r~-vdVNvyDwNGgTp  229 (296)
T KOG0502|consen  152 KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDA-LGKYRESALSLATRGGYTDIVELLLTRE-VDVNVYDWNGGTP  229 (296)
T ss_pred             cccCccccCchHhHHHHhcCchHHHHHHHHcCCChhh-hhhhhhhhHhHHhcCChHHHHHHHHhcC-CCcceeccCCCce
Confidence            4458899999999999999999999999999999866 6777889999999999999999999998 4678889999999


Q ss_pred             HhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHH
Q 013339           97 LHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALD  167 (445)
Q Consensus        97 Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~  167 (445)
                      |.+|++.|+.++++.|++.   +++++..|..|++++.+|+..|+. +++..++..+.++.+|+.-.||+|
T Consensus       230 LlyAvrgnhvkcve~Ll~s---GAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  230 LLYAVRGNHVKCVESLLNS---GADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             eeeeecCChHHHHHHHHhc---CCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCCCCC
Confidence            9999999999999999988   889999999999999999999987 888888888888888887777753

>PHA02792 ankyrin-like protein; Provisional

Probab=99.79  E-value=3.2e-18  Score=174.63  Aligned_cols=184  Identities=17%  Similarity=0.164  Sum_probs=150.0

Q ss_pred             CHHHHHHHHHHhchhhh-----------------------------------cCCCCCCChHHHHHHHcC-------CHH
Q 013339            2 HVADIVKELLEARQEFA-----------------------------------WKKDLNGHTPLHLSCSKG-------HLE   39 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~-----------------------------------~~~d~~G~TpLH~Aa~~g-------~~~   39 (445)
                      |+.|+++.|++.+.+..                                   +..|..|.||||+|+..+       +.|
T Consensus       117 ~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~  196 (631)
T PHA02792        117 PNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLD  196 (631)
T ss_pred             CChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHH
Confidence            68899999999986411                                   145667999999999999       899


Q ss_pred             HHHHHhhcCCCCCCCCCCCCccHHHHHHHcC--CHHHHHHHHhcCCCccccc----------------------------
Q 013339           40 ITRELLKLDPDLSSLPDNEGRTPLHWAAIKG--RINIIDEILSLNLQSAEMR----------------------------   89 (445)
Q Consensus        40 iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G--~~~iv~~Ll~~~~~~~~~~----------------------------   89 (445)
                      +++.|+++|++++. .|..|.||||+|+.+.  +.|+++.|++..-.-.+.+                            
T Consensus       197 v~k~Li~~g~~~~~-~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~  275 (631)
T PHA02792        197 VINYLISHEKEMRY-YTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLS  275 (631)
T ss_pred             HHHHHHhCCCCcCc-cCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHh
Confidence            99999999999988 8999999999999999  7788888876321000000                            


Q ss_pred             ------------------------------------------------------------cccCcchHhHHHHcCCHHHH
Q 013339           90 ------------------------------------------------------------TIHGETVLHLTVKNNQYEAV  109 (445)
Q Consensus        90 ------------------------------------------------------------~~~g~t~Lh~A~~~g~~~~v  109 (445)
                                                                                  ...+.+++|.|+..|+.+++
T Consensus       276 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIV  355 (631)
T PHA02792        276 GHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVV  355 (631)
T ss_pred             CCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHH
Confidence                                                                        01244567889999999999


Q ss_pred             HHHHHhcCcccccCCCCCCC--CcHHHHHHhCCcH---HHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHH
Q 013339          110 KYLMETLNITKLANMPDNDG--NTILHLATAGKLT---TMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPA  184 (445)
Q Consensus       110 ~~Ll~~~~~~~~~n~~d~~g--~T~LHlA~~~~~~---~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~  184 (445)
                      ++|+++   |+++|.+|.+|  .||||.|......   +++++|+++|+++|.+|..|+||||+    |...++.+++++
T Consensus       356 elLIs~---GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~----Aa~~~n~eivel  428 (631)
T PHA02792        356 EYILKN---GNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYY----CIESHSVSLVEW  428 (631)
T ss_pred             HHHHHc---CCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHH----HHHcCCHHHHHH
Confidence            999998   78889888875  6999998776654   46788899999999999999999999    556678889999


Q ss_pred             HHHhcCccc
Q 013339          185 LEEAGARRC  193 (445)
Q Consensus       185 L~~~ga~~~  193 (445)
                      |+++|++..
T Consensus       429 LLs~GADIN  437 (631)
T PHA02792        429 LIDNGADIN  437 (631)
T ss_pred             HHHCCCCCC
Confidence            999998754

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.78  E-value=6.6e-19  Score=152.97  Aligned_cols=129  Identities=26%  Similarity=0.296  Sum_probs=107.2

Q ss_pred             CCCCCccHHHHHHHcCCHHHHHHHHhcC------CCccccccccCcchHhHHHHcCCHH---HHHHHHHhcCcccccCCC
Q 013339           55 PDNEGRTPLHWAAIKGRINIIDEILSLN------LQSAEMRTIHGETVLHLTVKNNQYE---AVKYLMETLNITKLANMP  125 (445)
Q Consensus        55 ~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~------~~~~~~~~~~g~t~Lh~A~~~g~~~---~v~~Ll~~~~~~~~~n~~  125 (445)
                      +|.+|.||||+|+..|+..  +.+...+      +.....+|.+|+||||+|+..|+.+   ++++|++.   +.++|.+
T Consensus        13 ~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~---gadin~~   87 (154)
T PHA02736         13 PDIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEW---GADINGK   87 (154)
T ss_pred             cCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHc---CCCcccc
Confidence            6888999999999999842  2222211      1234456889999999999999874   67888887   7789999


Q ss_pred             C-CCCCcHHHHHHhCCcHHHHHHHHh-cCCCccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCcc
Q 013339          126 D-NDGNTILHLATAGKLTTMVIYLLK-LGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARR  192 (445)
Q Consensus       126 d-~~g~T~LHlA~~~~~~~iv~~Ll~-~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~  192 (445)
                      | .+|+||||+|+..++.+++++|+. .|++++.+|..|.||+++    +...++.+++++|++.|++.
T Consensus        88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~----A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYV----ACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHH----HHHcCCHHHHHHHHHcCCCC
Confidence            8 599999999999999999999996 699999999999999999    45567788999999999764

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.77  E-value=1.7e-18  Score=144.79  Aligned_cols=135  Identities=25%  Similarity=0.322  Sum_probs=117.0

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |..+.|+.||+.+++..+.+|.+|.||||.|+++||.+||+.|+..|++... +...||||||.||.-.+.+++..|+++
T Consensus        74 nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a-~T~~GWTPLhSAckWnN~~va~~LLqh  152 (228)
T KOG0512|consen   74 NRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEA-KTNEGWTPLHSACKWNNFEVAGRLLQH  152 (228)
T ss_pred             ccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCccc-ccccCccchhhhhcccchhHHHHHHhc
Confidence            4567899999999999999999999999999999999999999999999987 888999999999999999999999999


Q ss_pred             CCCccccccccCcchHhHHHHcCC-HHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCC
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQ-YEAVKYLMETLNITKLANMPDNDGNTILHLATAGK  140 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~-~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~  140 (445)
                      + .+++.......||||+|+...+ ...+.+|+...  ....-.++..+.||+.+|-+.+
T Consensus       153 g-aDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dr--yi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  153 G-ADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDR--YIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             c-CcccccccccchhhHHhhcccchHHHHHHHhhcc--ccChhhhcCccchHHHHHHHhh
Confidence            9 6777788888999999998765 56677776642  3334456778999999997654

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.77  E-value=4.3e-19  Score=159.57  Aligned_cols=133  Identities=29%  Similarity=0.425  Sum_probs=113.4

Q ss_pred             HHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHH
Q 013339           33 CSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL  112 (445)
Q Consensus        33 a~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~L  112 (445)
                      |+.|+.--|+.-|+.-...+++-|..|.+|||+||+.|+..+++.|+.++ .-.+..|....||||+|+.+|+.++|+.|
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rg-arvn~tnmgddtplhlaaahghrdivqkl   86 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRG-ARVNSTNMGDDTPLHLAAAHGHRDIVQKL   86 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcc-cccccccCCCCcchhhhhhcccHHHHHHH
Confidence            34444434444444433334457889999999999999999999999998 56777787888999999999999999999


Q ss_pred             HHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHH
Q 013339          113 METLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVV  169 (445)
Q Consensus       113 l~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a  169 (445)
                      ++.   .+++|..++.|+||||+|+..|+-++++-|+..|+.+++.|++|.||++.+
T Consensus        87 l~~---kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   87 LSR---KADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             HHH---hcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            987   788999999999999999999999999999999999999999999999983

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.77  E-value=7.5e-17  Score=164.14  Aligned_cols=161  Identities=28%  Similarity=0.403  Sum_probs=136.9

Q ss_pred             CCCCCCChHHHHHHH---cCCHHHHHHHhhcCCCCCC----CCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccc---
Q 013339           20 KKDLNGHTPLHLSCS---KGHLEITRELLKLDPDLSS----LPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMR---   89 (445)
Q Consensus        20 ~~d~~G~TpLH~Aa~---~g~~~iv~~LL~~~~~~~~----~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~---   89 (445)
                      ++...|+|.||.|.-   .++-++++.||+.-|.+.+    -....|.||||+|+.+.+.++|+.|++.+++ ++.+   
T Consensus       138 ~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gAD-V~aRa~G  216 (782)
T KOG3676|consen  138 ERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGAD-VHARACG  216 (782)
T ss_pred             cccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCc-hhhHhhc
Confidence            456689999999996   4567999999998765432    1245799999999999999999999998854 2211   


Q ss_pred             ------c--------------ccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHH
Q 013339           90 ------T--------------IHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLL  149 (445)
Q Consensus        90 ------~--------------~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll  149 (445)
                            |              ..|+.||-+||.-++.|++++|+++   ++++|.+|.+|||.||..+.+...++..+++
T Consensus       217 ~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~---gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L  293 (782)
T KOG3676|consen  217 AFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH---GADPNAQDSNGNTVLHMLVIHFVTEMYDLAL  293 (782)
T ss_pred             cccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc---CCCCCccccCCChHHHHHHHHHHHHHHHHHH
Confidence                  1              1389999999999999999999997   8999999999999999999999999999999


Q ss_pred             hcCCC--ccccccCCCCHHHHHhhhccccchhcHHHHHHHh
Q 013339          150 KLGVD--VNAINRKGYTALDVVESDASNSGALQIVPALEEA  188 (445)
Q Consensus       150 ~~g~~--~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~  188 (445)
                      ++|++  ...+|+.|.|||.+    |...+..++.+.+++.
T Consensus       294 ~~ga~~l~~v~N~qgLTPLtL----AaklGk~emf~~ile~  330 (782)
T KOG3676|consen  294 ELGANALEHVRNNQGLTPLTL----AAKLGKKEMFQHILER  330 (782)
T ss_pred             hcCCCccccccccCCCChHHH----HHHhhhHHHHHHHHHh
Confidence            99999  99999999999999    4555667788888776

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.76  E-value=6.6e-19  Score=171.21  Aligned_cols=133  Identities=28%  Similarity=0.342  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCC-----------------------------
Q 013339            3 VADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS-----------------------------   53 (445)
Q Consensus         3 ~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~-----------------------------   53 (445)
                      +.+||+++++.+.+++ ..|..||||||.|+.+||..++++|+.+|+++..                             
T Consensus        85 ~~e~v~~l~e~ga~Vn-~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~g  163 (527)
T KOG0505|consen   85 NLEMVKFLVENGANVN-AQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQG  163 (527)
T ss_pred             cHHHHHHHHHhcCCcc-ccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhc
Confidence            5789999999999988 8899999999999999999999999998754321                             


Q ss_pred             -----------------------------CCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcC
Q 013339           54 -----------------------------LPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNN  104 (445)
Q Consensus        54 -----------------------------~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g  104 (445)
                                                   +.+..|-|.||+|+.+|..++.+.|++.+ .....+|.+|+||||.|+.-|
T Consensus       164 i~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag-~~~~~~D~dgWtPlHAAA~Wg  242 (527)
T KOG0505|consen  164 IDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAG-YSVNIKDYDGWTPLHAAAHWG  242 (527)
T ss_pred             ccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhc-cCcccccccCCCcccHHHHhh
Confidence                                         12445999999999999999999999998 788999999999999999999


Q ss_pred             CHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCC
Q 013339          105 QYEAVKYLMETLNITKLANMPDNDGNTILHLATAGK  140 (445)
Q Consensus       105 ~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~  140 (445)
                      +.+++++|+++   +++++.....|.||+-+|....
T Consensus       243 ~~~~~elL~~~---ga~~d~~t~~g~~p~dv~dee~  275 (527)
T KOG0505|consen  243 QEDACELLVEH---GADMDAKTKMGETPLDVADEEE  275 (527)
T ss_pred             hHhHHHHHHHh---hcccchhhhcCCCCccchhhhh
Confidence            99999999998   7888999999999999997543

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.75  E-value=2.9e-18  Score=172.23  Aligned_cols=181  Identities=30%  Similarity=0.341  Sum_probs=112.7

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |+.++++.|++..+-+. ..|..|.+|||+|+..|+.|+++.||.++..++. .+..|.||||.||..|+.+++.+|+.+
T Consensus        60 g~~~is~llle~ea~ld-l~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na-~~~e~~tplhlaaqhgh~dvv~~Ll~~  137 (854)
T KOG0507|consen   60 GQNQISKLLLDYEALLD-LCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNA-VNIENETPLHLAAQHGHLEVVFYLLKK  137 (854)
T ss_pred             CchHHHHHHhcchhhhh-hhhccCcceEEehhhcCcchHHHHHHhcccCCCc-ccccCcCccchhhhhcchHHHHHHHhc
Confidence            45566666666655443 4456677777777777777777777777744433 666777777777777777777777777


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCccc------ccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCc
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITK------LANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDV  155 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~------~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~  155 (445)
                      + .+..++|+.++|+|-+|++.|+.++++.|++. +...      --..++-.+-+|||+|+++|+.++++.|++.|.++
T Consensus       138 ~-adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~-~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~di  215 (854)
T KOG0507|consen  138 N-ADPFIRNNSKETVLDLASRFGRAEVVQMLLQK-KFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDI  215 (854)
T ss_pred             C-CCccccCcccccHHHHHHHhhhhHHHHHHhhh-ccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCc
Confidence            6 45566677777777777777777777776654 1100      01233445566777777777777777777776666


Q ss_pred             cccccCCCCHHHHHhhhccccchhcHHHHHHHhcCc
Q 013339          156 NAINRKGYTALDVVESDASNSGALQIVPALEEAGAR  191 (445)
Q Consensus       156 ~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~  191 (445)
                      |...++| |+||.    +..-+..+++++|++.|..
T Consensus       216 n~~t~~g-talhe----aalcgk~evvr~ll~~gin  246 (854)
T KOG0507|consen  216 NYTTEDG-TALHE----AALCGKAEVVRFLLEIGIN  246 (854)
T ss_pred             ccccccc-hhhhh----HhhcCcchhhhHHHhhccc
Confidence            6555444 55555    3333444455555555543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.75  E-value=8.7e-18  Score=159.38  Aligned_cols=141  Identities=14%  Similarity=0.157  Sum_probs=120.6

Q ss_pred             CCHHHHHHHHHHhchhhhcC---CCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHH
Q 013339            1 MHVADIVKELLEARQEFAWK---KDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDE   77 (445)
Q Consensus         1 ~~~~d~v~~Ll~~~~~~~~~---~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~   77 (445)
                      +|..|+++.|++.+.+++..   .|..|.||||+|+..|+.++++.|+++|++++...+..|.||||+|+..|+.++++.
T Consensus        43 ~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivkl  122 (300)
T PHA02884         43 FHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEI  122 (300)
T ss_pred             cCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHH
Confidence            36789999999999988743   256899999999999999999999999999986345689999999999999999999


Q ss_pred             HHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCC
Q 013339           78 ILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGV  153 (445)
Q Consensus        78 Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~  153 (445)
                      |++.+ ..++.+|..|.||||+|+..++.+++..+..        +..+..+.+|++.+   ++.+++++|+.+++
T Consensus       123 LL~~G-Adin~kd~~G~TpL~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        123 LLSYG-ADINIQTNDMVTPIELALMICNNFLAFMICD--------NEISNFYKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             HHHCC-CCCCCCCCCCCCHHHHHHHhCChhHHHHhcC--------CcccccccChhhhh---ccHHHHHHHHHHHH
Confidence            99998 6778889999999999999999888765532        22467788899875   46899999988776

>PHA02792 ankyrin-like protein; Provisional

Probab=99.74  E-value=4.8e-17  Score=166.10  Aligned_cols=182  Identities=16%  Similarity=0.129  Sum_probs=146.3

Q ss_pred             HHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcC--CHHHHHHHhhcC--------------------------------
Q 013339            3 VADIVKELLEARQEFAWKKDLNGHTPLHLSCSKG--HLEITRELLKLD--------------------------------   48 (445)
Q Consensus         3 ~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g--~~~iv~~LL~~~--------------------------------   48 (445)
                      ..|+++.|++++.+++ ..|..|.||||+|+.+.  +.|+++.|++..                                
T Consensus       194 ~~~v~k~Li~~g~~~~-~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~  272 (631)
T PHA02792        194 SLDVINYLISHEKEMR-YYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDK  272 (631)
T ss_pred             CHHHHHHHHhCCCCcC-ccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHH
Confidence            3799999999999987 67888999999999998  677777776421                                


Q ss_pred             -----------------------------------------------------------CCCCCCCCCCCccHHHHHHHc
Q 013339           49 -----------------------------------------------------------PDLSSLPDNEGRTPLHWAAIK   69 (445)
Q Consensus        49 -----------------------------------------------------------~~~~~~~d~~G~TpLh~Aa~~   69 (445)
                                                                                 ++..   ...+..++|.||..
T Consensus       273 ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~---r~~~~n~~~~Aa~~  349 (631)
T PHA02792        273 LLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY---RFKHINKYFQKFDN  349 (631)
T ss_pred             HHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc---cCCcchHHHHHHHc
Confidence                                                                       1110   11356678999999


Q ss_pred             CCHHHHHHHHhcCCCccccccccC--cchHhHHHHcCCHH---HHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHH
Q 013339           70 GRINIIDEILSLNLQSAEMRTIHG--ETVLHLTVKNNQYE---AVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTM  144 (445)
Q Consensus        70 G~~~iv~~Ll~~~~~~~~~~~~~g--~t~Lh~A~~~g~~~---~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~i  144 (445)
                      |+.++++.|+++| ..++.+|.+|  .||||.|+.++..+   ++++|+++   ++++|.+|..|.||||.|+..++.++
T Consensus       350 gn~eIVelLIs~G-ADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~---GADIN~kD~~G~TPLh~Aa~~~n~ei  425 (631)
T PHA02792        350 RDPKVVEYILKNG-NVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPY---IDDINKIDKHGRSILYYCIESHSVSL  425 (631)
T ss_pred             CCHHHHHHHHHcC-CchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhc---CCccccccccCcchHHHHHHcCCHHH
Confidence            9999999999998 5567777664  69999988776654   56777777   77899999999999999999999999


Q ss_pred             HHHHHhcCCCccccccCCCCHHHHHhhhccc------cchhcHHHHHHHhcCcc
Q 013339          145 VIYLLKLGVDVNAINRKGYTALDVVESDASN------SGALQIVPALEEAGARR  192 (445)
Q Consensus       145 v~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~------~~~~~i~~~L~~~ga~~  192 (445)
                      +++|+++|++++.+|..|.||+++|...+..      ....++++.|++.|+..
T Consensus       426 velLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i  479 (631)
T PHA02792        426 VEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTI  479 (631)
T ss_pred             HHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCCh
Confidence            9999999999999999999999997653221      22345788888888654

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.71  E-value=2e-16  Score=130.96  Aligned_cols=125  Identities=40%  Similarity=0.624  Sum_probs=111.1

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhH
Q 013339           20 KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHL   99 (445)
Q Consensus        20 ~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~   99 (445)
                      ..|.+|+||||+|+..|+.++++.|++.+++... .+..|.||||.|+..++.++++.|++.++ ..+..+..|.||+|.
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~-~~~~g~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~~~l~~   79 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNA-KDNDGRTPLHLAAKNGHLEIVKLLLEKGA-DVNARDKDGNTPLHL   79 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCc-cCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCCCHHHH
Confidence            3567899999999999999999999999988754 78899999999999999999999999884 556677889999999


Q ss_pred             HHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHH
Q 013339          100 TVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLL  149 (445)
Q Consensus       100 A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll  149 (445)
                      |+..++.+++++|+++   +...+..|..|.||+|.|...++.+++++|+
T Consensus        80 a~~~~~~~~~~~L~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          80 AARNGNLDVVKLLLKH---GADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHcCcHHHHHHHHHc---CCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999999987   4567778899999999999999999988874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.71  E-value=7.1e-16  Score=157.13  Aligned_cols=148  Identities=25%  Similarity=0.322  Sum_probs=130.1

Q ss_pred             CHHHHHHHHHHhchhhhcC----CCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCC-------C-CC------------
Q 013339            2 HVADIVKELLEARQEFAWK----KDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSL-------P-DN------------   57 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~----~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~-------~-d~------------   57 (445)
                      ++.|+++.|++..|++.+.    ....|.||||+|+.+.+.++|+.||+.|+|++..       + |.            
T Consensus       157 ~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~  236 (782)
T KOG3676|consen  157 GHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGY  236 (782)
T ss_pred             hHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcce
Confidence            4679999999999997753    3456999999999999999999999999998642       1 11            


Q ss_pred             --CCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHH
Q 013339           58 --EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHL  135 (445)
Q Consensus        58 --~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHl  135 (445)
                        -|..||-+||..++.|++++|++++ ++++.+|.+|+|+||..+.+-..+|..++++.... .+...++.+|-|||.+
T Consensus       237 ~YfGEyPLSfAAC~nq~eivrlLl~~g-Ad~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~-~l~~v~N~qgLTPLtL  314 (782)
T KOG3676|consen  237 FYFGEYPLSFAACTNQPEIVRLLLAHG-ADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN-ALEHVRNNQGLTPLTL  314 (782)
T ss_pred             eeeccCchHHHHHcCCHHHHHHHHhcC-CCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCC-ccccccccCCCChHHH
Confidence              2678999999999999999999977 78999999999999999999999999999998543 4477889999999999


Q ss_pred             HHhCCcHHHHHHHHhc
Q 013339          136 ATAGKLTTMVIYLLKL  151 (445)
Q Consensus       136 A~~~~~~~iv~~Ll~~  151 (445)
                      |++.|..++.+.++++
T Consensus       315 AaklGk~emf~~ile~  330 (782)
T KOG3676|consen  315 AAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHhhhHHHHHHHHHh
Confidence            9999999999999976

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.69  E-value=4.6e-17  Score=163.70  Aligned_cols=167  Identities=28%  Similarity=0.335  Sum_probs=147.4

Q ss_pred             cCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHh
Q 013339           19 WKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLH   98 (445)
Q Consensus        19 ~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh   98 (445)
                      +..|.+|.|+||.||.+|+.++++.|++..+-+.- .|.+|.+|||+||..|+.++++.++... +..+..+..|+||||
T Consensus        43 n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl-~d~kg~~plhlaaw~g~~e~vkmll~q~-d~~na~~~e~~tplh  120 (854)
T KOG0507|consen   43 NLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDL-CDTKGILPLHLAAWNGNLEIVKMLLLQT-DILNAVNIENETPLH  120 (854)
T ss_pred             cccCccchhHHHHHHhcCchHHHHHHhcchhhhhh-hhccCcceEEehhhcCcchHHHHHHhcc-cCCCcccccCcCccc
Confidence            46788999999999999999999999998877644 7899999999999999999999999988 778888999999999


Q ss_pred             HHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCc--------cccccCCCCHHHHHh
Q 013339           99 LTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDV--------NAINRKGYTALDVVE  170 (445)
Q Consensus        99 ~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~--------~~~n~~G~Tpl~~a~  170 (445)
                      .||.+|+.+++.+|+.+   +.+.-.+|+.+.|+|-+|++.|..++++.|+....+.        ...+-.+-+|+|+  
T Consensus       121 laaqhgh~dvv~~Ll~~---~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHl--  195 (854)
T KOG0507|consen  121 LAAQHGHLEVVFYLLKK---NADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHL--  195 (854)
T ss_pred             hhhhhcchHHHHHHHhc---CCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcch--
Confidence            99999999999999998   6667788999999999999999999999998653222        2344567889999  


Q ss_pred             hhccccchhcHHHHHHHhcCcccC
Q 013339          171 SDASNSGALQIVPALEEAGARRCD  194 (445)
Q Consensus       171 ~~a~~~~~~~i~~~L~~~ga~~~~  194 (445)
                        +..+++.++++.|+++|.+...
T Consensus       196 --aakngh~~~~~~ll~ag~din~  217 (854)
T KOG0507|consen  196 --AAKNGHVECMQALLEAGFDINY  217 (854)
T ss_pred             --hhhcchHHHHHHHHhcCCCccc
Confidence              7888999999999999987654

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.68  E-value=1.2e-16  Score=143.94  Aligned_cols=116  Identities=28%  Similarity=0.350  Sum_probs=107.0

Q ss_pred             hhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcch
Q 013339           17 FAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETV   96 (445)
Q Consensus        17 ~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~   96 (445)
                      .++.-|+.|.+|||+||+.||..+|+.||.+|+.++. .|....||||+||..||.++|..|++.. .+.+..|..|.||
T Consensus        26 dln~gddhgfsplhwaakegh~aivemll~rgarvn~-tnmgddtplhlaaahghrdivqkll~~k-advnavnehgntp  103 (448)
T KOG0195|consen   26 DLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNS-TNMGDDTPLHLAAAHGHRDIVQKLLSRK-ADVNAVNEHGNTP  103 (448)
T ss_pred             ccccccccCcchhhhhhhcccHHHHHHHHhccccccc-ccCCCCcchhhhhhcccHHHHHHHHHHh-cccchhhccCCCc
Confidence            3447788999999999999999999999999999987 6777889999999999999999999987 6788999999999


Q ss_pred             HhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHH
Q 013339           97 LHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLAT  137 (445)
Q Consensus        97 Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~  137 (445)
                      ||+||.-|...+.+-|+..   ++.++..+++|.|||..|-
T Consensus       104 lhyacfwgydqiaedli~~---ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen  104 LHYACFWGYDQIAEDLISC---GAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             hhhhhhhcHHHHHHHHHhc---cceeeecccCCCCchhhhc
Confidence            9999999999999999887   8889999999999998874

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.66  E-value=6.3e-16  Score=121.07  Aligned_cols=89  Identities=37%  Similarity=0.505  Sum_probs=44.6

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcH
Q 013339           63 LHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLT  142 (445)
Q Consensus        63 Lh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~  142 (445)
                      ||+|+..|+.++++.|++.+. ..+.    |+||||+|+.+|+.+++++|++.   +..++.+|.+|+||||+|+..++.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~-~~~~----~~~~l~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~   72 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGA-DINL----GNTALHYAAENGNLEIVKLLLEN---GADINSQDKNGNTALHYAAENGNL   72 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTS-TTTS----SSBHHHHHHHTTTHHHHHHHHHT---TTCTT-BSTTSSBHHHHHHHTTHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcC-CCCC----CCCHHHHHHHcCCHHHHHHHHHh---cccccccCCCCCCHHHHHHHcCCH
Confidence            445555555555555555432 1111    44555555555555555555554   444555555566666666666666


Q ss_pred             HHHHHHHhcCCCccccc
Q 013339          143 TMVIYLLKLGVDVNAIN  159 (445)
Q Consensus       143 ~iv~~Ll~~g~~~~~~n  159 (445)
                      +++++|+++|++++.+|
T Consensus        73 ~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   73 EIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHHHTTT-TTSS-
T ss_pred             HHHHHHHHcCCCCCCcC
Confidence            66666665565555443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.66  E-value=4.3e-16  Score=144.68  Aligned_cols=143  Identities=22%  Similarity=0.341  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHhchhhhcCCCCCCChHHHHHHHc-----CCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHH
Q 013339            3 VADIVKELLEARQEFAWKKDLNGHTPLHLSCSK-----GHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDE   77 (445)
Q Consensus         3 ~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~-----g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~   77 (445)
                      +-++|+.||+.+---.++.|..|.||.++|+..     .+.++|+.|.+.| +++......|.|+|++|+..|+.++++.
T Consensus       280 NF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~  358 (452)
T KOG0514|consen  280 NFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKA  358 (452)
T ss_pred             chHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHH
Confidence            568999999999777779999999999999854     4788999999876 5666567789999999999999999999


Q ss_pred             HHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHH
Q 013339           78 ILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLL  149 (445)
Q Consensus        78 Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll  149 (445)
                      |+..+ .++++.|.+|.|+|++|+++||+|++++|+...  .+++...|.+|.|+|.+|...|+.+|.-.|.
T Consensus       359 LLacg-AdVNiQDdDGSTALMCA~EHGhkEivklLLA~p--~cd~sLtD~DgSTAl~IAleagh~eIa~mlY  427 (452)
T KOG0514|consen  359 LLACG-ADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVP--SCDISLTDVDGSTALSIALEAGHREIAVMLY  427 (452)
T ss_pred             HHHcc-CCCccccCCccHHHhhhhhhChHHHHHHHhccC--cccceeecCCCchhhhhHHhcCchHHHHHHH
Confidence            99988 789999999999999999999999999999875  4567778999999999999999999987776

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.66  E-value=9.4e-16  Score=120.06  Aligned_cols=89  Identities=33%  Similarity=0.528  Sum_probs=78.5

Q ss_pred             HHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHH
Q 013339           29 LHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEA  108 (445)
Q Consensus        29 LH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~  108 (445)
                      ||+||+.|+.++++.|++.+.++..     |.||||+|+..|+.+++++|++.+ ..++.+|..|+||||+|+.+|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL-----GNTALHYAAENGNLEIVKLLLENG-ADINSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS-----SSBHHHHHHHTTTHHHHHHHHHTT-TCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC-----CCCHHHHHHHcCCHHHHHHHHHhc-ccccccCCCCCCHHHHHHHcCCHHH
Confidence            8999999999999999998877744     889999999999999999999998 5678888999999999999999999


Q ss_pred             HHHHHHhcCcccccCCCC
Q 013339          109 VKYLMETLNITKLANMPD  126 (445)
Q Consensus       109 v~~Ll~~~~~~~~~n~~d  126 (445)
                      +++|+++   +..+|.+|
T Consensus        75 ~~~Ll~~---g~~~~~~n   89 (89)
T PF12796_consen   75 VKLLLEH---GADVNIRN   89 (89)
T ss_dssp             HHHHHHT---TT-TTSS-
T ss_pred             HHHHHHc---CCCCCCcC
Confidence            9999988   66666654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.62  E-value=6.4e-15  Score=121.90  Aligned_cols=123  Identities=40%  Similarity=0.576  Sum_probs=109.0

Q ss_pred             CCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHH
Q 013339           55 PDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILH  134 (445)
Q Consensus        55 ~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LH  134 (445)
                      +|.+|.||||+|+..|+.++++.|++.++. ....+..|.+|||.|+..++.+++++|++.   +..++..+..|.||+|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~-~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~---~~~~~~~~~~~~~~l~   78 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLEK---GADVNARDKDGNTPLH   78 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCHHHHHHHHHc---CCCccccCCCCCCHHH
Confidence            577899999999999999999999999854 367788999999999999999999999997   4467788899999999


Q ss_pred             HHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHHH
Q 013339          135 LATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPAL  185 (445)
Q Consensus       135 lA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L  185 (445)
                      .|+..++.+++++|++.+.+.+..|..|.||++.+..    .+..+++++|
T Consensus        79 ~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~L  125 (126)
T cd00204          79 LAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAK----NGHLEVVKLL  125 (126)
T ss_pred             HHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHh----cCCHHHHHHh
Confidence            9999999999999999999999999999999999543    3556666665

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.56  E-value=5.2e-14  Score=129.00  Aligned_cols=129  Identities=33%  Similarity=0.472  Sum_probs=111.5

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCC-----HHHHHHHHhcCC--Ccccccccc
Q 013339           20 KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGR-----INIIDEILSLNL--QSAEMRTIH   92 (445)
Q Consensus        20 ~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~-----~~iv~~Ll~~~~--~~~~~~~~~   92 (445)
                      ..+..+.+++|.++..+..++++.++..+.++ ..+|.+|.||||+|+..|+     .++++.|++.+.  +....+|.+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~  146 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED  146 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC
Confidence            45566889999999999999999999999988 4489999999999999999     899999999987  577777889


Q ss_pred             CcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcC
Q 013339           93 GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG  152 (445)
Q Consensus        93 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g  152 (445)
                      |.||||+|+..|+.++++.|++.   +..++..+..|.|++|.|+..++.++++.+++.+
T Consensus       147 g~tpl~~A~~~~~~~~~~~ll~~---~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         147 GNTPLHWAALNGDADIVELLLEA---GADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCchhHHHHHcCchHHHHHHHhc---CCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999999887   6677778889999999999999999988888765

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.53  E-value=8.7e-15  Score=151.64  Aligned_cols=183  Identities=25%  Similarity=0.334  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcC
Q 013339            3 VADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLN   82 (445)
Q Consensus         3 ~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~   82 (445)
                      +.|.++.|+.++.+.- .+|+.|.+||-+|+..||..+|+.||++.+++....|+.+.|+|.+||..|+.++++.|+..+
T Consensus       769 h~e~vellv~rganie-hrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~g  847 (2131)
T KOG4369|consen  769 HREEVELLVVRGANIE-HRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAG  847 (2131)
T ss_pred             cHHHHHHHHHhccccc-ccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhh
Confidence            4455555555554443 455555555555555555555555555555555555555555555555555555555555544


Q ss_pred             CCccccccc-----------------------------------cCcchHhHHHHcCCHHHHHHHHHhcCcccccCCC-C
Q 013339           83 LQSAEMRTI-----------------------------------HGETVLHLTVKNNQYEAVKYLMETLNITKLANMP-D  126 (445)
Q Consensus        83 ~~~~~~~~~-----------------------------------~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~-d  126 (445)
                       ...+.++.                                   .|-.||.+|..+|+.+.++.|++.   +.++|.+ .
T Consensus       848 -ankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~---gsdiNaqIe  923 (2131)
T KOG4369|consen  848 -ANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQP---GSDINAQIE  923 (2131)
T ss_pred             -ccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcc---cchhccccc
Confidence             22222332                                   355666666666666666666655   5556655 3


Q ss_pred             CCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCcccC
Q 013339          127 NDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCD  194 (445)
Q Consensus       127 ~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~~  194 (445)
                      .+.||+|-+|+..|+.+++.+||.+.+++..+-+.|.|||.-    ....+..++-++|+.+|++...
T Consensus       924 TNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme----~AsgGyvdvg~~li~~gad~na  987 (2131)
T KOG4369|consen  924 TNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLME----MASGGYVDVGNLLIAAGADTNA  987 (2131)
T ss_pred             cccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccch----hhcCCccccchhhhhccccccc
Confidence            466778888888888888888888888887888888888876    5667778888888888887654

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.50  E-value=7.7e-13  Score=121.20  Aligned_cols=132  Identities=36%  Similarity=0.486  Sum_probs=118.7

Q ss_pred             CCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCC-----HHHHHHHHHhcCcccccCCCCC
Q 013339           53 SLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQ-----YEAVKYLMETLNITKLANMPDN  127 (445)
Q Consensus        53 ~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~-----~~~v~~Ll~~~~~~~~~n~~d~  127 (445)
                      ...+..+.+|+|.++..+..+++++++..+.+. ..++..|.||||+|+.+|+     .+++++|++........+.+|.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  145 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE  145 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence            336777999999999999999999999999655 9999999999999999999     9999999998321126777899


Q ss_pred             CCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHHHHHhc
Q 013339          128 DGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAG  189 (445)
Q Consensus       128 ~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~g  189 (445)
                      +|+||||+|+..++.+++++|++.|++++..|..|.|+++.    +...+..++.+.+++.+
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~----a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         146 DGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDP----AAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhh----hcccchHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999    77778888999998876

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.46  E-value=9.3e-14  Score=144.19  Aligned_cols=170  Identities=23%  Similarity=0.322  Sum_probs=145.5

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHH
Q 013339           22 DLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTV  101 (445)
Q Consensus        22 d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~  101 (445)
                      ..+-.|+|-.||..||.|+|++|+.+|+++.. +|+.|.+||-+|+..||..+|+.|+++..+.....|..+.|+|-+|+
T Consensus       754 e~n~~t~LT~acaggh~e~vellv~rganieh-rdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlac  832 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLVVRGANIEH-RDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLAC  832 (2131)
T ss_pred             CccccccccccccCccHHHHHHHHHhcccccc-cccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEec
Confidence            33568999999999999999999999999966 99999999999999999999999999987777778899999999999


Q ss_pred             HcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccc--cCCCCHHHHHhhhccccchh
Q 013339          102 KNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAIN--RKGYTALDVVESDASNSGAL  179 (445)
Q Consensus       102 ~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n--~~G~Tpl~~a~~~a~~~~~~  179 (445)
                      ..|+.++|++|+..   ++....++-...|||.+|...|..++++.|+..|.++|.+.  +.|..||.+    +...++.
T Consensus       833 sggr~~vvelLl~~---gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLml----atmngh~  905 (2131)
T KOG4369|consen  833 SGGRTRVVELLLNA---GANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLML----ATMNGHQ  905 (2131)
T ss_pred             CCCcchHHHHHHHh---hccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhh----hhhcccc
Confidence            99999999999988   44455666777899999999999999999999998887654  678999998    5666777


Q ss_pred             cHHHHHHHhcCcccCCCCCC
Q 013339          180 QIVPALEEAGARRCDQLPPM  199 (445)
Q Consensus       180 ~i~~~L~~~ga~~~~~~~~~  199 (445)
                      ...+.|++-|.+...++...
T Consensus       906 ~at~~ll~~gsdiNaqIeTN  925 (2131)
T KOG4369|consen  906 AATLSLLQPGSDINAQIETN  925 (2131)
T ss_pred             HHHHHHhcccchhccccccc
Confidence            77777777776655554433

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.44  E-value=2.2e-13  Score=95.86  Aligned_cols=54  Identities=46%  Similarity=0.835  Sum_probs=44.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHH
Q 013339           25 GHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL   79 (445)
Q Consensus        25 G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll   79 (445)
                      |+||||+||+.|+.++++.|+++|.+++. +|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~-~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINA-QDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT--B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHccCHHHHHHHC
Confidence            78999999999999999999999999877 6999999999999999999999885

...

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.41  E-value=7.2e-13  Score=99.62  Aligned_cols=100  Identities=21%  Similarity=0.384  Sum_probs=58.9

Q ss_pred             HHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHH
Q 013339           29 LHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEA  108 (445)
Q Consensus        29 LH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~  108 (445)
                      ..+++++|.++-|+..+..|-+++.+  ..|++|||+||-.|..+++++|+..+ ..++.+|+.|-|||..|+..||.++
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g~nVn~~--~ggR~plhyAAD~GQl~ilefli~iG-A~i~~kDKygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEGLNVNEI--YGGRTPLHYAADYGQLSILEFLISIG-ANIQDKDKYGITPLLSAVWEGHRDC   82 (117)
T ss_pred             HhhhhccCcHHHHHHHHHccccHHHH--hCCcccchHhhhcchHHHHHHHHHhc-cccCCccccCCcHHHHHHHHhhHHH
Confidence            44556666666666666666555442  25666666666666666666666665 4555566666666666666666666


Q ss_pred             HHHHHHhcCcccccCCCCCCCCcHHH
Q 013339          109 VKYLMETLNITKLANMPDNDGNTILH  134 (445)
Q Consensus       109 v~~Ll~~~~~~~~~n~~d~~g~T~LH  134 (445)
                      |++|+++   +++-..+..+|.+.+.
T Consensus        83 VklLL~~---GAdrt~~~PdG~~~~e  105 (117)
T KOG4214|consen   83 VKLLLQN---GADRTIHAPDGTALIE  105 (117)
T ss_pred             HHHHHHc---CcccceeCCCchhHHh
Confidence            6666665   4444444555555444

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.41  E-value=8.5e-13  Score=99.23  Aligned_cols=103  Identities=19%  Similarity=0.241  Sum_probs=92.2

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCc
Q 013339           62 PLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKL  141 (445)
Q Consensus        62 pLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~  141 (445)
                      -+.++.++|..+-|+..+..+ ...+. ...|++|||+|+-+|+.+++++|+..   ++.++.+|+.|-|||--|+..|+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g-~nVn~-~~ggR~plhyAAD~GQl~ilefli~i---GA~i~~kDKygITPLLsAvwEGH   79 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEG-LNVNE-IYGGRTPLHYAADYGQLSILEFLISI---GANIQDKDKYGITPLLSAVWEGH   79 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHcc-ccHHH-HhCCcccchHhhhcchHHHHHHHHHh---ccccCCccccCCcHHHHHHHHhh
Confidence            467889999999999999887 33332 23799999999999999999999987   88999999999999999999999


Q ss_pred             HHHHHHHHhcCCCccccccCCCCHHHHH
Q 013339          142 TTMVIYLLKLGVDVNAINRKGYTALDVV  169 (445)
Q Consensus       142 ~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a  169 (445)
                      .++|++|++.|++......+|.+.++..
T Consensus        80 ~~cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   80 RDCVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHHHHcCcccceeCCCchhHHhhc
Confidence            9999999999999999999999988763

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.39  E-value=3.5e-13  Score=95.41  Aligned_cols=56  Identities=41%  Similarity=0.614  Sum_probs=29.6

Q ss_pred             HHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHH
Q 013339           10 LLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWA   66 (445)
Q Consensus        10 Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~A   66 (445)
                      ||+.++...+..|..|.||||+||..|+.+++++|++.|+++.. +|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~-~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNA-KDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT----TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCC-CcCCCCCHHHhC
Confidence            46666555568888888888888888888888888888888866 888888888886

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.35  E-value=3.8e-12  Score=135.22  Aligned_cols=108  Identities=24%  Similarity=0.301  Sum_probs=94.2

Q ss_pred             HHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHH
Q 013339           28 PLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYE  107 (445)
Q Consensus        28 pLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~  107 (445)
                      .||.|+..|+.++++.|++.|++++. +|.+|+||||+|+..|+.+++++|++.+ .+.+.+|.+|.||||+|+.+|+.+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~-~d~~G~TpLh~Aa~~g~~eiv~~LL~~G-advn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNC-RDYDGRTPLHIACANGHVQVVRVLLEFG-ADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCcHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCCcHH
Confidence            58899999999999999999999977 8999999999999999999999999998 567889999999999999999999


Q ss_pred             HHHHHHHh----cCcccccCCCCCCCCcHHHHHH
Q 013339          108 AVKYLMET----LNITKLANMPDNDGNTILHLAT  137 (445)
Q Consensus       108 ~v~~Ll~~----~~~~~~~n~~d~~g~T~LHlA~  137 (445)
                      ++++|+++    ...++..+..+.+|.+|+..+.
T Consensus       163 iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            99999987    3345566666777776665443

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.35  E-value=4.3e-12  Score=134.77  Aligned_cols=105  Identities=23%  Similarity=0.234  Sum_probs=96.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCC
Q 013339           61 TPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGK  140 (445)
Q Consensus        61 TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~  140 (445)
                      ++|+.|+..|+.++++.|++.+ .+.+.+|.+|.||||+|+.+|+.+++++|++.   +.++|.+|.+|+||||+|+..+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~G-adin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~---Gadvn~~d~~G~TpLh~A~~~g  159 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGG-ADPNCRDYDGRTPLHIACANGHVQVVRVLLEF---GADPTLLDKDGKTPLELAEENG  159 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHCC
Confidence            3588999999999999999988 56788899999999999999999999999998   7889999999999999999999


Q ss_pred             cHHHHHHHHhc-------CCCccccccCCCCHHHHH
Q 013339          141 LTTMVIYLLKL-------GVDVNAINRKGYTALDVV  169 (445)
Q Consensus       141 ~~~iv~~Ll~~-------g~~~~~~n~~G~Tpl~~a  169 (445)
                      +.+++++|+++       |++.+..+..|.+|+...
T Consensus       160 ~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        160 FREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             cHHHHHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            99999999988       899999999888887653

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.33  E-value=3.8e-12  Score=123.53  Aligned_cols=114  Identities=22%  Similarity=0.271  Sum_probs=51.7

Q ss_pred             HHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHH
Q 013339           32 SCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKY  111 (445)
Q Consensus        32 Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~  111 (445)
                      |+..|.+++|+..+..-.|... .|++|.|+||-|+..||++||++|++.+ .+.+..|.+|+||||+|+..++..+++.
T Consensus       557 aaLeGEldlVq~~i~ev~DpSq-pNdEGITaLHNAiCaghyeIVkFLi~~g-anVNa~DSdGWTPLHCAASCNnv~~ckq  634 (752)
T KOG0515|consen  557 AALEGELDLVQRIIYEVTDPSQ-PNDEGITALHNAICAGHYEIVKFLIEFG-ANVNAADSDGWTPLHCAASCNNVPMCKQ  634 (752)
T ss_pred             hhhcchHHHHHHHHHhhcCCCC-CCccchhHHhhhhhcchhHHHHHHHhcC-CcccCccCCCCchhhhhhhcCchHHHHH
Confidence            4444555555544443333322 4445555555555555555555555544 3444444555555555555555555555


Q ss_pred             HHHhcCcccccCCCCCCCCcHHHHHH--hCCcHHHHHHHH
Q 013339          112 LMETLNITKLANMPDNDGNTILHLAT--AGKLTTMVIYLL  149 (445)
Q Consensus       112 Ll~~~~~~~~~n~~d~~g~T~LHlA~--~~~~~~iv~~Ll  149 (445)
                      |++..  .+.+-..-.++.|+...|-  ..|+.+|.+||-
T Consensus       635 LVe~G--aavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  635 LVESG--AAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             HHhcc--ceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            55442  1122222234444444332  234455555554

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.31  E-value=1e-11  Score=112.40  Aligned_cols=112  Identities=21%  Similarity=0.292  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcC
Q 013339            3 VADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLN   82 (445)
Q Consensus         3 ~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~   82 (445)
                      -++-...||.-...++ .+|.+|.|||..|+..|+.++|+.||+.|+|++.-++..++||||+||..|+.++++.|++.|
T Consensus        24 dt~~a~~LLs~vr~vn-~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaG  102 (396)
T KOG1710|consen   24 DTEAALALLSTVRQVN-QRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAG  102 (396)
T ss_pred             cHHHHHHHHHHhhhhh-ccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhcc
Confidence            3556667777755555 889999999999999999999999999999999888999999999999999999999999998


Q ss_pred             CCccccccccCcchHhHHHHcCCHHHHHHHHHhc
Q 013339           83 LQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL  116 (445)
Q Consensus        83 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~  116 (445)
                       .-....|.-|+|+-.+|+--|+.++|..+-++.
T Consensus       103 -a~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~~  135 (396)
T KOG1710|consen  103 -ARMYLVNSVGRTAAQMAAFVGHHECVAIINNHI  135 (396)
T ss_pred             -CccccccchhhhHHHHHHHhcchHHHHHHhccc
Confidence             566777888999999999999999998876543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.26  E-value=4.5e-12  Score=89.68  Aligned_cols=50  Identities=36%  Similarity=0.381  Sum_probs=28.8

Q ss_pred             cccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHH
Q 013339          120 KLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVV  169 (445)
Q Consensus       120 ~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a  169 (445)
                      .++|.+|..|+||||+|+..|+.+++++|++.|++++.+|.+|+||+|+|
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56788888888888888888888888888888888888888888888873

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.25  E-value=1.7e-11  Score=86.15  Aligned_cols=53  Identities=40%  Similarity=0.700  Sum_probs=24.5

Q ss_pred             CccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHH
Q 013339           59 GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL  112 (445)
Q Consensus        59 G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~L  112 (445)
                      |+||||+|+..|+.++++.|++.+ .+++.+|.+|+||||+|+.+|+.+++++|
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~-~din~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHG-ADINAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTT-SGTT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            445555555555555555555554 33444455555555555555555555554

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.23  E-value=2.8e-11  Score=117.58  Aligned_cols=122  Identities=29%  Similarity=0.297  Sum_probs=103.4

Q ss_pred             ccHHH---HHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHH
Q 013339           60 RTPLH---WAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLA  136 (445)
Q Consensus        60 ~TpLh---~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA  136 (445)
                      ..||-   -|+..|..++|+.++..- .+....|..|-|+||-|+..||.++|++|++.   +.++|..|.+||||||+|
T Consensus       548 fnPLaLLLDaaLeGEldlVq~~i~ev-~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~---ganVNa~DSdGWTPLHCA  623 (752)
T KOG0515|consen  548 FNPLALLLDAALEGELDLVQRIIYEV-TDPSQPNDEGITALHNAICAGHYEIVKFLIEF---GANVNAADSDGWTPLHCA  623 (752)
T ss_pred             cchHHHHHhhhhcchHHHHHHHHHhh-cCCCCCCccchhHHhhhhhcchhHHHHHHHhc---CCcccCccCCCCchhhhh
Confidence            45644   488999999999998776 56677788999999999999999999999998   889999999999999999


Q ss_pred             HhCCcHHHHHHHHhcCCCccccc-cCCCCHHHHHhhhccccchhcHHHHHHH
Q 013339          137 TAGKLTTMVIYLLKLGVDVNAIN-RKGYTALDVVESDASNSGALQIVPALEE  187 (445)
Q Consensus       137 ~~~~~~~iv~~Ll~~g~~~~~~n-~~G~Tpl~~a~~~a~~~~~~~i~~~L~~  187 (445)
                      +.-++..+++.|++.|+.+-+.. .++.||.+-+..  ...+..++.++|..
T Consensus       624 ASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee--~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  624 ASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEE--MEEGYDQCSQYLYG  673 (752)
T ss_pred             hhcCchHHHHHHHhccceEEeeecccccchhhhcch--hhhhHHHHHHHHHH
Confidence            99999999999999999876654 578899876442  34566778888853

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.13  E-value=3.2e-10  Score=102.74  Aligned_cols=120  Identities=18%  Similarity=0.215  Sum_probs=94.9

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcC
Q 013339           25 GHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNN  104 (445)
Q Consensus        25 G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g  104 (445)
                      -..||.-+...|..+-...||+--..++. +|..|+|||..|+..|+.++++.+++.+.+...-.+..+.||||+|+..|
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~-~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVNQ-RDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhhc-cCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            46788888888888888888876555655 78888888888888888888888888886555556667888888888888


Q ss_pred             CHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHH
Q 013339          105 QYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYL  148 (445)
Q Consensus       105 ~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~L  148 (445)
                      +.++.+.|++.   |+.....+.-|.|+-.+|+.-|+.++|..+
T Consensus        91 n~dvcrlllda---Ga~~~~vNsvgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   91 NQDVCRLLLDA---GARMYLVNSVGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             CchHHHHHHhc---cCccccccchhhhHHHHHHHhcchHHHHHH
Confidence            88888888876   555555667788888888888888887654

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.74  E-value=8e-09  Score=105.62  Aligned_cols=92  Identities=21%  Similarity=0.243  Sum_probs=77.6

Q ss_pred             HHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCC-CCCcHHHHHHhCCcHHHHHHHHhcCCCc
Q 013339           77 EILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDN-DGNTILHLATAGKLTTMVIYLLKLGVDV  155 (445)
Q Consensus        77 ~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~-~g~T~LHlA~~~~~~~iv~~Ll~~g~~~  155 (445)
                      ++-+.|....+++|..|+|+||+|+..|+.+++++|+++   |.+++.+|. .|+||||-|+..|+.+++..||.+|+.+
T Consensus        36 F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqh---Gidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL  112 (1267)
T KOG0783|consen   36 FSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQH---GIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSL  112 (1267)
T ss_pred             HHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhc---CceeeeccccccchHhhHhhhhchHHHHHHHHhcCCce
Confidence            444556666788888899999999999999999999988   777888876 5889999999999999999999999999


Q ss_pred             cccccCCCCHHHHHhh
Q 013339          156 NAINRKGYTALDVVES  171 (445)
Q Consensus       156 ~~~n~~G~Tpl~~a~~  171 (445)
                      .++|++|..||+.+.+
T Consensus       113 ~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  113 RIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             EEecccCCCHHHHHhh
Confidence            9999999999988765

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.73  E-value=4.3e-08  Score=95.03  Aligned_cols=95  Identities=26%  Similarity=0.316  Sum_probs=87.1

Q ss_pred             CCCCCCChH------HHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccC
Q 013339           20 KKDLNGHTP------LHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHG   93 (445)
Q Consensus        20 ~~d~~G~Tp------LH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g   93 (445)
                      -+|++|.|.      ||-.++.|+.+..-.||..|+++++.-...|.||||+||+.|+..-+++|+-+| .++...|.+|
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYG-AD~~a~d~~G  200 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYG-ADPGAQDSSG  200 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhcc-CCCCCCCCCC
Confidence            467778775      999999999999999999999999988889999999999999999999999998 6788899999


Q ss_pred             cchHhHHHHcCCHHHHHHHHHh
Q 013339           94 ETVLHLTVKNNQYEAVKYLMET  115 (445)
Q Consensus        94 ~t~Lh~A~~~g~~~~v~~Ll~~  115 (445)
                      +||+.+|-..||.++.+.|++.
T Consensus       201 mtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  201 MTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             CcHHHHHHhcCchHHHHHHHHH
Confidence            9999999999999988888763

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.73  E-value=9.3e-09  Score=99.16  Aligned_cols=90  Identities=24%  Similarity=0.304  Sum_probs=52.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHc
Q 013339           24 NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKN  103 (445)
Q Consensus        24 ~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~  103 (445)
                      ++-.++.+|++.|++..++.+.-.|.|+.. +|.+.+|+||+||..|+++++++|++.+..+...+|..|+|||.-|...
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~~-~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F  583 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLET-KDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHF  583 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccccc-cccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhc
Confidence            344455566666666665555555555544 5555666666666666666666666655555555555566666666656


Q ss_pred             CCHHHHHHHHH
Q 013339          104 NQYEAVKYLME  114 (445)
Q Consensus       104 g~~~~v~~Ll~  114 (445)
                      +|.+++++|-+
T Consensus       584 ~h~~v~k~L~~  594 (622)
T KOG0506|consen  584 KHKEVVKLLEE  594 (622)
T ss_pred             CcHHHHHHHHH
Confidence            66665555544

>PF13606 Ank_3: Ankyrin repeat

Probab=98.73  E-value=1.4e-08  Score=61.47  Aligned_cols=29  Identities=48%  Similarity=0.846  Sum_probs=25.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhcCCCCC
Q 013339           24 NGHTPLHLSCSKGHLEITRELLKLDPDLS   52 (445)
Q Consensus        24 ~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~   52 (445)
                      +|+||||+||+.|+.|+|++|+++|+|++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            48899999999999999999999988875

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.72  E-value=4e-08  Score=96.60  Aligned_cols=116  Identities=21%  Similarity=0.174  Sum_probs=74.0

Q ss_pred             HHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCC-ccccccccCcchHhHHHHcCCHHH
Q 013339           30 HLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQ-SAEMRTIHGETVLHLTVKNNQYEA  108 (445)
Q Consensus        30 H~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~-~~~~~~~~g~t~Lh~A~~~g~~~~  108 (445)
                      ..|+..+++--++.+-..|.++.- ++.+..|-||+|+..|+-++|+++++++|. ..+..|..|+|+||-|+..++..+
T Consensus       871 l~av~~~D~~klqE~h~~gg~ll~-~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  871 LRAVLSSDLMKLQETHLNGGSLLI-QGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHhccHHHHHHHHhcCCceEe-eCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            344444444444444455556543 666677777777777777777777777663 345556667777777777777777


Q ss_pred             HHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHH
Q 013339          109 VKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLL  149 (445)
Q Consensus       109 v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll  149 (445)
                      +++|++.   ++.+...|..|.||-.-|-..+..++.-||-
T Consensus       950 c~~lvda---gasl~ktd~kg~tp~eraqqa~d~dlaayle  987 (1004)
T KOG0782|consen  950 CQLLVDA---GASLRKTDSKGKTPQERAQQAGDPDLAAYLE  987 (1004)
T ss_pred             HHHHHhc---chhheecccCCCChHHHHHhcCCchHHHHHh
Confidence            7777665   5556666677777777666666666666654

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.71  E-value=9.9e-09  Score=104.95  Aligned_cols=92  Identities=27%  Similarity=0.310  Sum_probs=82.7

Q ss_pred             HHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccc
Q 013339           10 LLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMR   89 (445)
Q Consensus        10 Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~   89 (445)
                      +-+.+.++++..|..|+|+||+|+..|..++++.||++|.++.-.....|+||||-|...|+++++-.|+.++ ....+.
T Consensus        37 ~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g-~SL~i~  115 (1267)
T KOG0783|consen   37 SEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKG-RSLRIK  115 (1267)
T ss_pred             HHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcC-CceEEe
Confidence            3445667788999999999999999999999999999999998755567999999999999999999999999 788999


Q ss_pred             cccCcchHhHHHH
Q 013339           90 TIHGETVLHLTVK  102 (445)
Q Consensus        90 ~~~g~t~Lh~A~~  102 (445)
                      |++|..||..-++
T Consensus       116 Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  116 DKEGLSPLQFLSR  128 (1267)
T ss_pred             cccCCCHHHHHhh
Confidence            9999999988765

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.69  E-value=2.7e-08  Score=97.72  Aligned_cols=104  Identities=19%  Similarity=0.231  Sum_probs=90.6

Q ss_pred             HHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCC-CCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCcccc
Q 013339           10 LLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPD-LSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEM   88 (445)
Q Consensus        10 Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~-~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~   88 (445)
                      ...++.++. .++.+.+|.||+|+..|+-|+|+++|++++. +....|..|.|+||-||..++..++.+|++.+ .....
T Consensus       885 ~h~~gg~ll-~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdag-asl~k  962 (1004)
T KOG0782|consen  885 THLNGGSLL-IQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAG-ASLRK  962 (1004)
T ss_pred             HHhcCCceE-eeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcc-hhhee
Confidence            334444554 6788899999999999999999999999974 44557899999999999999999999999999 57777


Q ss_pred             ccccCcchHhHHHHcCCHHHHHHHHHh
Q 013339           89 RTIHGETVLHLTVKNNQYEAVKYLMET  115 (445)
Q Consensus        89 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  115 (445)
                      .|.+|.||-..|-..|..+...||-.+
T Consensus       963 td~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  963 TDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             cccCCCChHHHHHhcCCchHHHHHhhh
Confidence            899999999999999999999999654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.57  E-value=8.2e-08  Score=59.74  Aligned_cols=30  Identities=40%  Similarity=0.785  Sum_probs=26.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhcCCCCCC
Q 013339           24 NGHTPLHLSCSKGHLEITRELLKLDPDLSS   53 (445)
Q Consensus        24 ~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~   53 (445)
                      +|.||||+|+..|+.++++.|+++|++++.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~   30 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINA   30 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence            588999999999999999999998888865

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.54  E-value=9.3e-08  Score=57.89  Aligned_cols=29  Identities=52%  Similarity=0.732  Sum_probs=23.4

Q ss_pred             CCCcHHHHHHhCCcHHHHHHHHhcCCCcc
Q 013339          128 DGNTILHLATAGKLTTMVIYLLKLGVDVN  156 (445)
Q Consensus       128 ~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~  156 (445)
                      +|+||||+|+..|+.+++++|+++|+|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            47888888888888888888888888776

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.53  E-value=1.2e-07  Score=59.00  Aligned_cols=33  Identities=45%  Similarity=0.584  Sum_probs=28.3

Q ss_pred             CCCcHHHHHHhCCcHHHHHHHHhcCCCcccccc
Q 013339          128 DGNTILHLATAGKLTTMVIYLLKLGVDVNAINR  160 (445)
Q Consensus       128 ~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~  160 (445)
                      +|+||||+|+..++.+++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            588899999999999999999999988888764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.53  E-value=8e-08  Score=92.85  Aligned_cols=93  Identities=28%  Similarity=0.255  Sum_probs=83.4

Q ss_pred             ccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHH-hcCCCccccccCCCCHHHHH
Q 013339           91 IHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLL-KLGVDVNAINRKGYTALDVV  169 (445)
Q Consensus        91 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll-~~g~~~~~~n~~G~Tpl~~a  169 (445)
                      .++...+.+|++.|....++.+.-.   +.+++.+|.+..|+||+|+..|+.+++++|+ ..+++++.+|.+|.||||- 
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~---g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDd-  579 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQ---GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDD-  579 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHh---cccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchH-
Confidence            4566789999999999999877655   7789999999999999999999999999999 6799999999999999998 


Q ss_pred             hhhccccchhcHHHHHHHhcC
Q 013339          170 ESDASNSGALQIVPALEEAGA  190 (445)
Q Consensus       170 ~~~a~~~~~~~i~~~L~~~ga  190 (445)
                         |..+++.+++++|.++.-
T Consensus       580 ---A~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  580 ---AKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             ---hHhcCcHHHHHHHHHHhc
Confidence               788899999999988643

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.48  E-value=2.9e-07  Score=90.57  Aligned_cols=75  Identities=40%  Similarity=0.531  Sum_probs=56.2

Q ss_pred             HHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcC
Q 013339            7 VKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLN   82 (445)
Q Consensus         7 v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~   82 (445)
                      .+++...-....+.+|..|.||||+|+..||.+.++.|+..|+++.. +|++|++|||-|+..|+.+++..++.+.
T Consensus        37 ~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~-kN~~gWs~L~EAv~~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   37 EQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSI-KNNEGWSPLHEAVSTGNEQIITEVLRHL  111 (560)
T ss_pred             HHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccc-cccccccHHHHHHHcCCHHHHHHHHHHh
Confidence            34444443334567788888888888888888888888888888744 7888888888888888888887777664

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.36  E-value=1.8e-06  Score=84.06  Aligned_cols=93  Identities=24%  Similarity=0.267  Sum_probs=75.0

Q ss_pred             CCCCCccH------HHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCC
Q 013339           55 PDNEGRTP------LHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDND  128 (445)
Q Consensus        55 ~d~~G~Tp------Lh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~  128 (445)
                      +|.+|.|.      ||..++.|+.+.+--|+..|.+..-.--.+|.||||+|++.|+...+++|.-.   |++++.+|.+
T Consensus       123 rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vY---GAD~~a~d~~  199 (669)
T KOG0818|consen  123 RDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVY---GADPGAQDSS  199 (669)
T ss_pred             CCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhc---cCCCCCCCCC
Confidence            56666654      88899999999888888888544444445789999999999999999988776   8888999999


Q ss_pred             CCcHHHHHHhCCcHHHHHHHHh
Q 013339          129 GNTILHLATAGKLTTMVIYLLK  150 (445)
Q Consensus       129 g~T~LHlA~~~~~~~iv~~Ll~  150 (445)
                      |.||+.+|-..||.++.+-|++
T Consensus       200 GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  200 GMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CCcHHHHHHhcCchHHHHHHHH
Confidence            9999999998888887666553

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.33  E-value=9.8e-07  Score=86.90  Aligned_cols=87  Identities=25%  Similarity=0.394  Sum_probs=66.0

Q ss_pred             cHHHHHHHcCCHHHHHHHH-hcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhC
Q 013339           61 TPLHWAAIKGRINIIDEIL-SLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAG  139 (445)
Q Consensus        61 TpLh~Aa~~G~~~iv~~Ll-~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~  139 (445)
                      -|||.++.....+-+...+ ..-...++.+|..|+||||+|+.-|+.+.++.|+..   ++++..++++|++|||-|+..
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a---~Adv~~kN~~gWs~L~EAv~~   98 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSA---GADVSIKNNEGWSPLHEAVST   98 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhc---CCCccccccccccHHHHHHHc
Confidence            3588888877766554433 333345677788888888888888888888888876   667778888888888888888


Q ss_pred             CcHHHHHHHHh
Q 013339          140 KLTTMVIYLLK  150 (445)
Q Consensus       140 ~~~~iv~~Ll~  150 (445)
                      |+.+++..++.
T Consensus        99 g~~q~i~~vlr  109 (560)
T KOG0522|consen   99 GNEQIITEVLR  109 (560)
T ss_pred             CCHHHHHHHHH
Confidence            88888777763

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.20  E-value=8e-06  Score=81.08  Aligned_cols=94  Identities=26%  Similarity=0.279  Sum_probs=77.4

Q ss_pred             HhHHHHcCCHHHHHHHHHhcCccccc-CCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccc
Q 013339           97 LHLTVKNNQYEAVKYLMETLNITKLA-NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASN  175 (445)
Q Consensus        97 Lh~A~~~g~~~~v~~Ll~~~~~~~~~-n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~  175 (445)
                      |..|+...+...+.+|+.+....... ...+.+|.|+||+|+..|+..+.++|+-+|+|+.+.|..|.|||.+    |..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~y----ar~  703 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFY----ARQ  703 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhh----Hhh
Confidence            45567767777777888775444333 3346788999999999999999999999999999999999999999    666


Q ss_pred             cchhcHHHHHHHhcCcccC
Q 013339          176 SGALQIVPALEEAGARRCD  194 (445)
Q Consensus       176 ~~~~~i~~~L~~~ga~~~~  194 (445)
                      .+..+++++|+++|.....
T Consensus       704 a~sqec~d~llq~gcp~e~  722 (749)
T KOG0705|consen  704 AGSQECIDVLLQYGCPDEC  722 (749)
T ss_pred             cccHHHHHHHHHcCCCccc
Confidence            7788999999999986543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.18  E-value=3.4e-06  Score=83.61  Aligned_cols=87  Identities=23%  Similarity=0.310  Sum_probs=66.6

Q ss_pred             HHHHHHHcCCHHHHHHHhhcCCCC---CCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcC
Q 013339           28 PLHLSCSKGHLEITRELLKLDPDL---SSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNN  104 (445)
Q Consensus        28 pLH~Aa~~g~~~iv~~LL~~~~~~---~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g  104 (445)
                      -|--|+...++..+-+||.+|...   ...-+.+|+|+||+||..|++.+.++|+.++ .+...+|.+|+|+|.+|-..|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg-~dv~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYG-VDVMARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhC-ccceecccCCchhhhhHhhcc
Confidence            466677777777788888776432   1224566788888888888888888888877 567778888888888888888


Q ss_pred             CHHHHHHHHHh
Q 013339          105 QYEAVKYLMET  115 (445)
Q Consensus       105 ~~~~v~~Ll~~  115 (445)
                      ..|++..|++.
T Consensus       706 sqec~d~llq~  716 (749)
T KOG0705|consen  706 SQECIDVLLQY  716 (749)
T ss_pred             cHHHHHHHHHc
Confidence            88888888886

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.17  E-value=3.5e-06  Score=89.41  Aligned_cols=125  Identities=18%  Similarity=0.113  Sum_probs=57.6

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhc-CCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHH
Q 013339           22 DLNGHTPLHLSCSKGHLEITRELLKL-DPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLT  100 (445)
Q Consensus        22 d~~G~TpLH~Aa~~g~~~iv~~LL~~-~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A  100 (445)
                      .-.|+|.||+++..++...++.+++- |..... .|.+|.--+|+ |..++.+.+-+++......++++|.+|+||||+|
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~~e-ld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLE-LDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCchh-hcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchH
Confidence            33455555555555555555555553 222211 34444444444 3334444444444444445555555555555555


Q ss_pred             HHcCCHHHHHHHHHhcCccc---ccCCCCCCCCcHHHHHHhCCcHHHHHHH
Q 013339          101 VKNNQYEAVKYLMETLNITK---LANMPDNDGNTILHLATAGKLTTMVIYL  148 (445)
Q Consensus       101 ~~~g~~~~v~~Ll~~~~~~~---~~n~~d~~g~T~LHlA~~~~~~~iv~~L  148 (445)
                      +.+|+..++..|++......   +....+..|.|+--+|-.+|+..+..+|
T Consensus       649 a~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~l  699 (975)
T KOG0520|consen  649 AFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYL  699 (975)
T ss_pred             hhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHH
Confidence            55555555555554321111   1222233445555555444444444444

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.11  E-value=1.7e-06  Score=92.15  Aligned_cols=78  Identities=35%  Similarity=0.437  Sum_probs=73.4

Q ss_pred             cCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhh
Q 013339           92 HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVES  171 (445)
Q Consensus        92 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~  171 (445)
                      .|.++||.|+.+|..-++++|+++   ++.+|..|..|+||||.+...|+...+..|+++|++.++.+.+|.+|++++..
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~---ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQN---GADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAME  731 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhc---CCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhh
Confidence            589999999999999999999998   67799999999999999999999999999999999999999999999999754


Q ss_pred             h
Q 013339          172 D  172 (445)
Q Consensus       172 ~  172 (445)
                      .
T Consensus       732 ~  732 (785)
T KOG0521|consen  732 A  732 (785)
T ss_pred             h
Confidence            3

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.97  E-value=7e-06  Score=87.62  Aligned_cols=84  Identities=21%  Similarity=0.220  Sum_probs=46.4

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHH
Q 013339           58 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLAT  137 (445)
Q Consensus        58 ~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~  137 (445)
                      .|.|+||.|+..|..-+++.|++.+ +.++.+|..|+||||.+...|+...+..++++   ++..+.-|.+|.+||+.|.
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~g-a~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~---~a~~~a~~~~~~~~l~~a~  730 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNG-ADVNALDSKGRTPLHHATASGHTSIACLLLKR---GADPNAFDPDGKLPLDIAM  730 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcC-CcchhhhccCCCcchhhhhhcccchhhhhccc---cccccccCccCcchhhHHh
Confidence            3455555555555555555555555 33555555555666655555555555555554   4455555555666666554


Q ss_pred             hCCcHHHH
Q 013339          138 AGKLTTMV  145 (445)
Q Consensus       138 ~~~~~~iv  145 (445)
                      ...+.+++
T Consensus       731 ~~~~~d~~  738 (785)
T KOG0521|consen  731 EAANADIV  738 (785)
T ss_pred             hhccccHH
Confidence            44444433

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.96  E-value=3.5e-05  Score=80.38  Aligned_cols=129  Identities=18%  Similarity=0.163  Sum_probs=100.6

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhcCCC--C-CCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHH
Q 013339           24 NGHTPLHLSCSKGHLEITRELLKLDPD--L-SSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLT  100 (445)
Q Consensus        24 ~G~TpLH~Aa~~g~~~iv~~LL~~~~~--~-~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A  100 (445)
                      .+.--.-.|++.|+.-.|+..++....  . .+..|.-|+++||+|..+.+.++++.|+++.-..        ..+|.+|
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~a   95 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLA   95 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHH
Confidence            345557789999999999999985443  1 1236888999999999999999999999986321        5699999


Q ss_pred             HHcCCHHHHHHHHHhcCcccc-------cCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCcccccc
Q 013339          101 VKNNQYEAVKYLMETLNITKL-------ANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINR  160 (445)
Q Consensus       101 ~~~g~~~~v~~Ll~~~~~~~~-------~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~  160 (445)
                      +..|..++|+.++.+.....-       ....-..+-|||.+||..++.+|+++|+++|+.+...-.
T Consensus        96 I~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH~  162 (822)
T KOG3609|consen   96 IAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPHD  162 (822)
T ss_pred             HHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCcc
Confidence            999999999999987432110       011123467999999999999999999999998765433

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.92  E-value=1.1e-05  Score=85.89  Aligned_cols=127  Identities=23%  Similarity=0.194  Sum_probs=97.5

Q ss_pred             CCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHH
Q 013339           55 PDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILH  134 (445)
Q Consensus        55 ~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LH  134 (445)
                      ..-.|+|-+|+++..++.-.++.+++-........|.+|...+|+ |..++.+..-+++..  .+..++.+|..|+||||
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~--~~~ai~i~D~~G~tpL~  646 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISA--DGVAIDIRDRNGWTPLH  646 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEee--cccccccccCCCCcccc
Confidence            566789999999999999999999986224556677889999999 455666666555543  25568899999999999


Q ss_pred             HHHhCCcHHHHHHHHhcCCCcc------ccccCCCCHHHHHhhhccccchhcHHHHHHHh
Q 013339          135 LATAGKLTTMVIYLLKLGVDVN------AINRKGYTALDVVESDASNSGALQIVPALEEA  188 (445)
Q Consensus       135 lA~~~~~~~iv~~Ll~~g~~~~------~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~  188 (445)
                      +|+..|+..++..|.+.|++..      ..+..|.|+-++    +...++..+..+|.+.
T Consensus       647 wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~l----a~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  647 WAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADL----ARANGHKGIAGYLSEK  702 (975)
T ss_pred             hHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhh----hhcccccchHHHHhhh
Confidence            9999999999999997776644      334469999999    4455666666666543

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.72  E-value=7.8e-05  Score=70.72  Aligned_cols=85  Identities=19%  Similarity=0.275  Sum_probs=66.8

Q ss_pred             hhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCc
Q 013339           15 QEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGE   94 (445)
Q Consensus        15 ~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~   94 (445)
                      |.+..+.+.  .--|..||+.|..+.|+.|++.|.+++. .|+-..+||.+|+..||.++++.|+++|+ .......+|.
T Consensus        28 ~s~~~~~~~--f~elceacR~GD~d~v~~LVetgvnVN~-vD~fD~spL~lAsLcGHe~vvklLLenGA-iC~rdtf~G~  103 (516)
T KOG0511|consen   28 PSVPLKKVP--FGELCEACRAGDVDRVRYLVETGVNVNA-VDRFDSSPLYLASLCGHEDVVKLLLENGA-ICSRDTFDGD  103 (516)
T ss_pred             cccccccCc--hHHHHHHhhcccHHHHHHHHHhCCCcch-hhcccccHHHHHHHcCcHHHHHHHHHcCC-cccccccCcc
Confidence            444434443  3348999999999999999999999988 89999999999999999999999999994 4444455676


Q ss_pred             chHhHHHHcC
Q 013339           95 TVLHLTVKNN  104 (445)
Q Consensus        95 t~Lh~A~~~g  104 (445)
                      -++ +++.+.
T Consensus       104 RC~-YgaLnd  112 (516)
T KOG0511|consen  104 RCH-YGALND  112 (516)
T ss_pred             hhh-hhhhhH
Confidence            664 444443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.70  E-value=8.4e-05  Score=64.16  Aligned_cols=63  Identities=30%  Similarity=0.269  Sum_probs=29.6

Q ss_pred             cCCCCCCCCcHHHHHHhCCcHHHHHHHHhcC-CCccccccCCCCHHHHHhhhccccchhcHHHHHHHh
Q 013339          122 ANMPDNDGNTILHLATAGKLTTMVIYLLKLG-VDVNAINRKGYTALDVVESDASNSGALQIVPALEEA  188 (445)
Q Consensus       122 ~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g-~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~  188 (445)
                      +|.+|..|+|+|++|+..|..+.+.+|+.+| +.+...|..|.+++.+    +...+..+++..|.+.
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaql----aek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQL----AEKGGAQAFVHSLFEN   68 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHH----HHhcChHHHHHHHHHH
Confidence            4444445555555555555555555555444 4444444444444444    2333344444444443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.68  E-value=0.00012  Score=63.33  Aligned_cols=65  Identities=17%  Similarity=0.171  Sum_probs=51.3

Q ss_pred             cCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCC
Q 013339           19 WKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL   83 (445)
Q Consensus        19 ~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~   83 (445)
                      +.+|..|||||++|+..|+.+.|.+|+.+|.......|..|.+++.+|-+.|..++++.|.+...
T Consensus         6 n~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    6 NARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             cchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            46788888888888888888888888888844434578888888888888888888888887643

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.53  E-value=0.00023  Score=74.56  Aligned_cols=106  Identities=20%  Similarity=0.251  Sum_probs=85.5

Q ss_pred             CHHHHHHHHHHhchh--hh-cCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHH
Q 013339            2 HVADIVKELLEARQE--FA-WKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEI   78 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~--~~-~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~L   78 (445)
                      |+.-.|+.+++....  ++ +..|.-|.++||+|+.+.|.|++++|+++....        ..+|-+|+..|.+++++.+
T Consensus        36 gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI~~~~v~~VE~l  107 (822)
T KOG3609|consen   36 GDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAIAVGSVPLVELL  107 (822)
T ss_pred             CChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHHHHHHHHHHHHH
Confidence            455577888877655  43 578889999999999999999999999986554        2488999999999999999


Q ss_pred             HhcCCCcc---------ccccccCcchHhHHHHcCCHHHHHHHHHh
Q 013339           79 LSLNLQSA---------EMRTIHGETVLHLTVKNNQYEAVKYLMET  115 (445)
Q Consensus        79 l~~~~~~~---------~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  115 (445)
                      +.+.....         ...-..+.|||.+||-.++.|++++|+.+
T Consensus       108 l~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~k  153 (822)
T KOG3609|consen  108 LVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTR  153 (822)
T ss_pred             HhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHc
Confidence            98653221         11223478999999999999999999987

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.99  E-value=0.0018  Score=61.81  Aligned_cols=69  Identities=16%  Similarity=0.158  Sum_probs=53.0

Q ss_pred             ccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcH
Q 013339           60 RTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTI  132 (445)
Q Consensus        60 ~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~  132 (445)
                      +--|..||+.|..+.++.|++.| ..++.+|.....||.+|+..||.++|++|+++   |+.-..-.-+|.-.
T Consensus        37 f~elceacR~GD~d~v~~LVetg-vnVN~vD~fD~spL~lAsLcGHe~vvklLLen---GAiC~rdtf~G~RC  105 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETG-VNVNAVDRFDSSPLYLASLCGHEDVVKLLLEN---GAICSRDTFDGDRC  105 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhC-CCcchhhcccccHHHHHHHcCcHHHHHHHHHc---CCcccccccCcchh
Confidence            34578888888888888888876 67888888888888888888888888888887   55444434455554

>smart00248 ANK ankyrin repeats

Probab=96.97  E-value=0.0013  Score=38.05  Aligned_cols=27  Identities=44%  Similarity=0.822  Sum_probs=19.9

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhcCCCC
Q 013339           25 GHTPLHLSCSKGHLEITRELLKLDPDL   51 (445)
Q Consensus        25 G~TpLH~Aa~~g~~~iv~~LL~~~~~~   51 (445)
                      |.||||+|+..|+.++++.|++.+.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            677777777777777777777776644

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.78  E-value=0.0031  Score=62.30  Aligned_cols=64  Identities=25%  Similarity=0.275  Sum_probs=50.1

Q ss_pred             HHHHHHHHHhcCccc---ccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHH
Q 013339          106 YEAVKYLMETLNITK---LANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVV  169 (445)
Q Consensus       106 ~~~v~~Ll~~~~~~~---~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a  169 (445)
                      ...+++|.++.-.+.   .....|..-.|+||+|+..|..+++.+||+.|+|+..+|..|.||+++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls  470 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLS  470 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCccccc
Confidence            566777776632221   1223345567999999999999999999999999999999999999983

>smart00248 ANK ankyrin repeats

Probab=96.28  E-value=0.0072  Score=34.64  Aligned_cols=27  Identities=41%  Similarity=0.525  Sum_probs=17.1

Q ss_pred             CCcHHHHHHhCCcHHHHHHHHhcCCCc
Q 013339          129 GNTILHLATAGKLTTMVIYLLKLGVDV  155 (445)
Q Consensus       129 g~T~LHlA~~~~~~~iv~~Ll~~g~~~  155 (445)
                      |+||+|+|+..++.++++.|++.+.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            566666666666666666666665544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.27  E-value=0.0064  Score=60.12  Aligned_cols=63  Identities=19%  Similarity=0.079  Sum_probs=41.3

Q ss_pred             HHHHHHHhhcCCCCCCC-----CCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHH
Q 013339           38 LEITRELLKLDPDLSSL-----PDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTV  101 (445)
Q Consensus        38 ~~iv~~LL~~~~~~~~~-----~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~  101 (445)
                      ...++.|.+++.+.+..     .+.---|+||+|+..|..+++.+||+.+ +++..+|..|+||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg-~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEG-CDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhc-CCchhcccCCCCcccccc
Confidence            44566666665554321     1222347777777777777777777777 667777777777777766

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=91.44  E-value=1.1  Score=40.40  Aligned_cols=117  Identities=22%  Similarity=0.258  Sum_probs=77.6

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCccc--ccCCCCCCCCcHHHHH--Hh
Q 013339           63 LHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITK--LANMPDNDGNTILHLA--TA  138 (445)
Q Consensus        63 Lh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~--~~n~~d~~g~T~LHlA--~~  138 (445)
                      |--|+...+.+-+..++....        +-.+++.+|..+++.+++-+|+.+++...  ......  +.--+.++  ..
T Consensus       157 ledAV~AsN~~~i~~~VtdKk--------dA~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~--~~ydieY~LS~h  226 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDKK--------DAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEK--ELYDIEYLLSEH  226 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcchH--------HHHHHHHHHhcccHHHHHHHHHhhcceecchhhhcCc--chhhHHHHHhhc
Confidence            455777777766666654331        24578999999999999999998764321  111111  11122222  23


Q ss_pred             CCcHHHHHHHHhcC-CCccc---cccCCCCHHHHHhhhccccchhcHHHHHHHhcCccc
Q 013339          139 GKLTTMVIYLLKLG-VDVNA---INRKGYTALDVVESDASNSGALQIVPALEEAGARRC  193 (445)
Q Consensus       139 ~~~~~iv~~Ll~~g-~~~~~---~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~  193 (445)
                      .....+.++++.+| +++|.   +-+.|.|-||-    |...+..+++.+|+++|+.+.
T Consensus       227 ~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDN----A~Ky~~~emi~~Llk~GA~~~  281 (284)
T PF06128_consen  227 SASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDN----AMKYKNSEMIAFLLKYGAISG  281 (284)
T ss_pred             CCcHHHHHHHHhccccccchhhhccCCcchHHHh----HHhcCcHHHHHHHHHcCcccc
Confidence            34677888888776 56664   34579999998    677788899999999998654

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569

Probab=87.11  E-value=5.8  Score=34.05  Aligned_cols=32  Identities=25%  Similarity=0.286  Sum_probs=25.8

Q ss_pred             cccccCCcccchhHhHHHHHHHHHHHHHHHHH
Q 013339          286 KSLVGKQTSFKVFMVCNIVALFLSLGIVIFLV  317 (445)
Q Consensus       286 ~~~~~~~~~F~~F~~~n~~a~~~S~~~~~~~~  317 (445)
                      +..+.+.++|+.|++.|.++..-|+..++.-+
T Consensus        35 ~a~f~d~~af~y~v~anai~~~Ysll~l~~~~   66 (154)
T TIGR01569        35 KAKFSDLPAFVYFVVANAIACGYSLLSLVVSI   66 (154)
T ss_pred             eeeeeccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566778999999999999999987766543

This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=85.97  E-value=4.5  Score=36.60  Aligned_cols=114  Identities=18%  Similarity=0.183  Sum_probs=71.3

Q ss_pred             HHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccc----cCcchHhHHHH--
Q 013339           29 LHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTI----HGETVLHLTVK--  102 (445)
Q Consensus        29 LH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~----~g~t~Lh~A~~--  102 (445)
                      |--|+...+.+-+..++....+        -.++|-+|..++..+++-+|+.+-.  ....|.    .+..-+-++..  
T Consensus       157 ledAV~AsN~~~i~~~VtdKkd--------A~~Am~~si~~~K~dva~~lls~f~--ft~~dv~~~~~~~ydieY~LS~h  226 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDKKD--------AHQAMWLSIGNAKEDVALYLLSKFN--FTKQDVASMEKELYDIEYLLSEH  226 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcchHH--------HHHHHHHHhcccHHHHHHHHHhhcc--eecchhhhcCcchhhHHHHHhhc
Confidence            4556666666666665543322        2468888888888888888887531  111111    12222222222  


Q ss_pred             cCCHHHHHHHHHhcCcccccC---CCCCCCCcHHHHHHhCCcHHHHHHHHhcCCC
Q 013339          103 NNQYEAVKYLMETLNITKLAN---MPDNDGNTILHLATAGKLTTMVIYLLKLGVD  154 (445)
Q Consensus       103 ~g~~~~v~~Ll~~~~~~~~~n---~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~  154 (445)
                      ..+..++++.+++.-  ..+|   .+-+.|.|.|.-|++.++.+++.+|+++|+-
T Consensus       227 ~a~~kvL~~Fi~~Gl--v~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  227 SASYKVLEYFINRGL--VDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             CCcHHHHHHHHhccc--cccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            234667777777631  1223   3456799999999999999999999999874

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=84.96  E-value=1.7  Score=32.37  Aligned_cols=46  Identities=24%  Similarity=0.244  Sum_probs=26.9

Q ss_pred             HHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339           28 PLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus        28 pLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      -|..|+..|+.|+++.+++.+ ..    +   ...+..|+...+.+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~-~~----~---~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKN-KP----D---NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHh-cc----H---HHHHHHHHHHhhHHHHHHHHHh
Confidence            356666666666666666543 11    1   2456666666666666666664

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=83.62  E-value=2.2  Score=31.67  Aligned_cols=48  Identities=27%  Similarity=0.448  Sum_probs=39.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhc
Q 013339           61 TPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL  116 (445)
Q Consensus        61 TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~  116 (445)
                      ..+..|...|+.|+++.+++.+. .       ....+..|+..-+.+++++|+++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~-~-------~~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNK-P-------DNDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhc-c-------HHHHHHHHHHHhhHHHHHHHHHhc
Confidence            46889999999999999987652 1       156799999999999999998873

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	445
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-12
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-10
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		6e-10
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-09
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-09
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		3e-09
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		7e-09
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		7e-09
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-08
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-08
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-08
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-08
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-08
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-08
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-08
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-08
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		4e-08
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-07
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-07
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		5e-07
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		9e-07
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-06
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		8e-06
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-06
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		5e-06
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-06
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		1e-06
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		1e-06
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-06
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-06
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		4e-06
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		3e-05
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		4e-06
1uoh_A	226	Human Gankyrin Length = 226		4e-06
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		5e-06
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		6e-06
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		7e-06
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		8e-06
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-05
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-05
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-05
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		5e-04
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		2e-05
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		4e-05
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		5e-04
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		4e-05
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		7e-04
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		4e-05
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		1e-04
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-04
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		2e-04
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		2e-04
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		2e-04
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		2e-04
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		4e-04
1ycs_B	239	P53-53bp2 Complex Length = 239		5e-04

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/132 (37%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
Query: 59  GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNI 118
           GRTPLH AA  G + ++  +L         +  +G T LHL  +N   E VK L+E    
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA--- 57
Query: 119 TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGA 178
               N  D +G T LHLA       +V  LL+ G DVNA ++ G T L +    A+ +G 
Sbjct: 58  GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL----AARNGH 113
Query: 179 LQIVPALEEAGA 190
           L++V  L EAGA
Sbjct: 114 LEVVKLLLEAGA 125

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 65/135 (48%), Gaps = 12/135 (8%)
Query: 58  EGRTPLHWAAIKGRINIIDEILSLNLQSAE--MRTIHGETVLHLTVKNNQYEAVKYLMET 115
           +G+TPLH AA  G   ++  +LS   Q A+   +   G+T LHL  +N   E VK L   
Sbjct: 36  DGKTPLHLAAENGHKEVVKLLLS---QGADPNAKDSDGKTPLHLAAENGHKEVVKLL--- 89
Query: 116 LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASN 175
           L+     N  D+DG T LHLA       +V  LL  G D N  +  G T LD+    A  
Sbjct: 90  LSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDL----ARE 145
Query: 176 SGALQIVPALEEAGA 190
            G  ++V  LE+ G 
Sbjct: 146 HGNEEVVKLLEKQGG 160

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 57  NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL 116
           N+G TPLH AA  G + I+ E+L  N        + G T LHL       E V+ L++  
Sbjct: 45  NDGYTPLHLAASNGHLEIV-EVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKH- 102
Query: 117 NITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
                 N  DNDG+T LHLA       +V  LLK G DVNA ++ G TA D+
Sbjct: 103 --GADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 60/133 (45%), Gaps = 8/133 (6%)
Query: 58  EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 117
           +GRTPLH+AA  G   I+  +LS        +   G T LH   +N   E VK L   L+
Sbjct: 36  DGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLL---LS 91
Query: 118 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSG 177
                N  D+DG T LH A       +V  LL  G D N  +  G T LD+    A   G
Sbjct: 92  KGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDL----AREHG 147
Query: 178 ALQIVPALEEAGA 190
             +IV  LE+ G 
Sbjct: 148 NEEIVKLLEKQGG 160

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 64/136 (47%), Gaps = 12/136 (8%)
Query: 57  NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL 116
           ++GRTPLH+AA +G   I+  ++S        +   G T LH   K    E VK L    
Sbjct: 35  SDGRTPLHYAAKEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHKEIVKLL---- 89
Query: 117 NITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDAS 174
            I+K A  N  D+DG T LH A       +V  L+  G DVN  +  G T LD+    A 
Sbjct: 90  -ISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDL----AR 144
Query: 175 NSGALQIVPALEEAGA 190
             G  +IV  LE+ G 
Sbjct: 145 EHGNEEIVKLLEKQGG 160

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 72/179 (40%), Gaps = 52/179 (29%)
Query: 4   ADIVKELLEA---------RQEFAWKKDLN-----GHTPLHLSCSKGHLEITREXXXXXX 49
           +D+ K+LLEA         R   A   D+N     GHTPLHL+   GHLEI  E      
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIV-EVLLKYG 70
Query: 50  XXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAV 109
                  N G TPLH AA  G + I++ +L            HG  V             
Sbjct: 71  ADVNAWDNYGATPLHLAADNGHLEIVEVLLK-----------HGADV------------- 106
Query: 110 KYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
                        N  D +G T LHLA       +V  LLK G DVNA ++ G TA D+
Sbjct: 107 -------------NAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 58  EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 117
           +G TPLH AA +G + I+ E+L         +   G T LHL  +    E V+ L++   
Sbjct: 46  DGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-- 102
Query: 118 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
                N  D DG T LHLA       +V  LLK G DVNA ++ G TA D+
Sbjct: 103 -GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDI 152

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 57  NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL 116
           N G TPLH AA+ G + I+ E+L  +    +   ++G T LHL       E V+ L   L
Sbjct: 45  NTGLTPLHLAAVSGHLEIV-EVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVL---L 100
Query: 117 NITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
                 N  D  G+T LHLA       +V  LLK G DVNA ++ G TA D+
Sbjct: 101 KYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 57  NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL 116
           + G+TPLH AAIKG + I+ E+L  +          G+T LHL       E V+ L++  
Sbjct: 45  DSGKTPLHLAAIKGHLEIV-EVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKN- 102
Query: 117 NITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
                 N  D  G T LHLA       +V  LLK G DVNA ++ G TA D+
Sbjct: 103 --GADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 97/223 (43%), Gaps = 32/223 (14%)
Query: 1   MHVA------DIVKELLE---ARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXX 51
           +HVA      DIVK LL    +    AW    NG+TPLH++  +  +E+ R         
Sbjct: 183 LHVAVHHNNLDIVKLLLPRGGSPHSPAW----NGYTPLHIAAKQNQVEVARSLLQYGGSA 238
Query: 52  XXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKY 111
                 +G TPLH AA +G   ++  +LS    +  +    G T LHL  +         
Sbjct: 239 NAESV-QGVTPLHLAAQEGHAEMVALLLS-KQANGNLGNKSGLTPLHLVAQEGHVPVADV 296
Query: 112 LMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVES 171
           L++      + +     G T LH+A+      +V +LL+   DVNA  + GY+ L     
Sbjct: 297 LIKH---GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPL----H 349
Query: 172 DASNSGALQIVPALEEAGARRCDQLPPMSPHDIQPIGDTSPIS 214
            A+  G   IV  L + GA         SP+++   G T+P++
Sbjct: 350 QAAQQGHTDIVTLLLKNGA---------SPNEVSSDG-TTPLA 382

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 62/135 (45%), Gaps = 12/135 (8%)
Query: 58  EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 117
           +GRTPLH AA  G   ++  ++S        +   G T LH   +N   E VK L     
Sbjct: 36  DGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLL----- 89
Query: 118 ITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASN 175
           I+K A  N  D+DG T LH A       +V  L+  G DVN  +  G T LD+    A  
Sbjct: 90  ISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDL----ARE 145
Query: 176 SGALQIVPALEEAGA 190
            G  ++V  LE+ G 
Sbjct: 146 HGNEEVVKLLEKQGG 160

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 57  NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL 116
           N G TPLH AA  G + I+ E+L  +    +   + G T LHL       E V+ L++  
Sbjct: 45  NTGTTPLHLAAYSGHLEIV-EVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKN- 102
Query: 117 NITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
                 N  D+DG T LHLA       +V  LLK G DVNA ++ G TA D+
Sbjct: 103 --GADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDI 152

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 59  GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNI 118
           G TPLH AA  G + I+ E+L  N          G T LHL  K    E V+ L   L  
Sbjct: 47  GDTPLHLAARVGHLEIV-EVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVL---LKY 102
Query: 119 TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
               N  D  G+T LHLA       +V  LLK G DVNA ++ G TA D+
Sbjct: 103 GADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 24  NGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNL 83
           NG TPLHL+   GHLE+ +              N GRTPLH AA  G + ++  +L    
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAG- 58
Query: 84  QSAEMRTIHGETVLHLTVKNNQYEAVKYLME 114
                +  +G T LHL  +N   E VK L+E
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 92  HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKL 151
           +G T LHL  +N   E VK L+E        N  D +G T LHLA       +V  LL+ 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEA---GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 152 GVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
           G DVNA ++ G T L +    A+ +G L++V  L EAGA
Sbjct: 58  GADVNAKDKNGRTPLHL----AARNGHLEVVKLLLEAGA 92

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 58  EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 117
           +G TPLH AA +G + I+ E+L         +   G T LHL  +    E V+ L++   
Sbjct: 34  DGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-- 90
Query: 118 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSG 177
                N  D DG T LHLA       +V  LLK G DVNA ++ G T  D+    A ++G
Sbjct: 91  -GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDL----AIDNG 145
Query: 178 ALQIVPALEEA 188
              I   L++A
Sbjct: 146 NEDIAEVLQKA 156

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 58  EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 117
           +G TPLH AA +G + I+ E+L         +   G T LHL  +    E V+ L   L 
Sbjct: 34  DGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL---LK 89
Query: 118 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVV 169
                N  D DG T LHLA       +V  LLK G DVNA ++ G T  D+ 
Sbjct: 90  AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLA 141

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 57  NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL 116
           ++G TPLH AA  G   I+ E+L  +      R   G T LHL   N   E V+ L   L
Sbjct: 45  DQGSTPLHLAAWIGHPEIV-EVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVL---L 100
Query: 117 NITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
                 N  D  G T LHLA       +V  LLK G DVNA ++ G TA D+
Sbjct: 101 KYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 57/148 (38%), Gaps = 38/148 (25%)
Query: 21  KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 80
           +D  G TPLHL+   GHLEI  E             + G TPLH AA +G + I+ E+L 
Sbjct: 43  RDFTGWTPLHLAAHFGHLEIV-EVLLKNGADVNAKDSLGVTPLHLAARRGHLEIV-EVLL 100
Query: 81  LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGK 140
            N         HG T LHL  K    E V+                              
Sbjct: 101 KNGADVNASDSHGFTPLHLAAKRGHLEIVE------------------------------ 130
Query: 141 LTTMVIYLLKLGVDVNAINRKGYTALDV 168
                  LLK G DVNA ++ G TA D+
Sbjct: 131 ------VLLKNGADVNAQDKFGKTAFDI 152

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 59  GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNI 118
           G TPLH AA  G + I+ E+L  N          G T LHL       E V+ L++    
Sbjct: 47  GWTPLHLAAYWGHLEIV-EVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKN--- 102
Query: 119 TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
               N  D++G T LHLA       +V  LLK G DVNA ++ G TA D+
Sbjct: 103 GADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 80/198 (40%), Gaps = 36/198 (18%)
Query: 5   DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLH 64
           D +KE + A +  A + D +  T LH +CS GH EI  E             + G +PLH
Sbjct: 20  DELKERILADKSLATRTDQDSRTALHWACSAGHTEIV-EFLLQLGVPVNDKDDAGWSPLH 78
Query: 65  WAAIKGRINIIDEILSLNLQSAEMRTI--HGETVLHLTVKNNQYEAVKYLME-------- 114
            AA  GR  I+  +L   ++ A +  +  +G T LH     N++E    L+E        
Sbjct: 79  IAASAGRDEIVKALL---VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK 135
Query: 115 ---------------TLNITKL-------ANMPDNDGNTILHLATAGKLTTMVIYLLKLG 152
                           L +  +        N+ D +GNT LHLA   +      +L+  G
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 153 VDVNAINRKGYTALDVVE 170
             +   N++  T L V +
Sbjct: 196 ASIYIENKEEKTPLQVAK 213

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 57/147 (38%), Gaps = 38/147 (25%)
Query: 22  DLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL 81
           D NG TPLHL+ + G LEI  E             + G TPLH AA  G + I++ +L  
Sbjct: 36  DDNGLTPLHLAAANGQLEIV-EVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLK- 93
Query: 82  NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKL 141
                     HG  V                          N  D  G T LHLA     
Sbjct: 94  ----------HGADV--------------------------NAYDRAGWTPLHLAALSGQ 117
Query: 142 TTMVIYLLKLGVDVNAINRKGYTALDV 168
             +V  LLK G DVNA +  G TA D+
Sbjct: 118 LEIVEVLLKHGADVNAQDALGLTAFDI 144

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 76  DEILSLNLQSAEMRTI--HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTIL 133
           DE+  L    A++     +G T LHL   N Q E V+ L++        N  D+ G T L
Sbjct: 20  DEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKN---GADVNASDSAGITPL 76
Query: 134 HLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
           HLA       +V  LLK G DVNA +R G+T L +    A+ SG L+IV  L + GA
Sbjct: 77  HLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHL----AALSGQLEIVEVLLKHGA 129

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 70/179 (39%), Gaps = 52/179 (29%)
Query: 4   ADIVKELLEA---------RQEFAWKKDLN-----GHTPLHLSCSKGHLEITREXXXXXX 49
           +D+ K+LLEA         R   A   D+N     G TPLHL  + GHLEI  E      
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEII-EVLLKYA 70
Query: 50  XXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAV 109
                    G TPLH AA +G + I++ +L            +G  V             
Sbjct: 71  ADVNASDKSGWTPLHLAAYRGHLEIVEVLLK-----------YGADV------------- 106
Query: 110 KYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
                        N  D  G T LHLA       +V  LLK G DVNA ++ G TA D+
Sbjct: 107 -------------NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 93  GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG 152
           G T LHL V N   E ++ L   L      N  D  G T LHLA       +V  LLK G
Sbjct: 47  GITPLHLVVNNGHLEIIEVL---LKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYG 103
Query: 153 VDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
            DVNA++ +GYT L +    A+  G L+IV  L + GA
Sbjct: 104 ADVNAMDYQGYTPLHL----AAEDGHLEIVEVLLKYGA 137

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 59  GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNI 118
           G TPLH AA  G + I+ E+L  N          G T LHL       E V+ L++    
Sbjct: 47  GWTPLHLAAYFGHLEIV-EVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKN--- 102
Query: 119 TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
               N  D++G T LHLA       +V  LLK G DVNA ++ G TA D+
Sbjct: 103 GADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 60/147 (40%), Gaps = 38/147 (25%)
Query: 22  DLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL 81
           D +G TPLHL+ + GHLEI  E               G TPLH AA+ G + I++ +L  
Sbjct: 44  DASGLTPLHLAATYGHLEIV-EVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLK- 101
Query: 82  NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKL 141
                     HG  V                          N  D  G+T LHLA     
Sbjct: 102 ----------HGADV--------------------------NAVDTWGDTPLHLAAIMGH 125
Query: 142 TTMVIYLLKLGVDVNAINRKGYTALDV 168
             +V  LLK G DVNA ++ G TA D+
Sbjct: 126 LEIVEVLLKHGADVNAQDKFGKTAFDI 152

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 31/158 (19%)
Query: 58  EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET-- 115
           +G +PLH AA+ GR ++I  +L  +  +A  R       LHL  +   ++ VK L+++  
Sbjct: 85  DGSSPLHVAALHGRADLIPLLLK-HGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNA 143
Query: 116 -LNITKLA---------------------------NMPDNDGNTILHLATAGKLTTMVIY 147
             N   L+                           N  +N GNT LH A   K   +V  
Sbjct: 144 KPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVEL 203
Query: 148 LLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPAL 185
           LL  G  V  +N++  TA+D  E ++     LQ+VP+ 
Sbjct: 204 LLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSC 241

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 59  GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNI 118
           GRTPLH AA  G + I+ E+L  N         +G T LHL       E V+ L   L  
Sbjct: 35  GRTPLHMAAAVGHLEIV-EVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVL---LKY 90
Query: 119 TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
               N  D  G T L+LA       +V  LLK G DVNA ++ G TA D+
Sbjct: 91  GADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDI 140

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 60/147 (40%), Gaps = 38/147 (25%)
Query: 22  DLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL 81
           D +G TPLHL+ + GHLEI  E               G TPLH AA+ G + I++ +L  
Sbjct: 44  DASGLTPLHLAATYGHLEIV-EVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLK- 101
Query: 82  NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKL 141
                     HG  V                          N  D  G+T LHLA     
Sbjct: 102 ----------HGADV--------------------------NAVDTWGDTPLHLAAIMGH 125
Query: 142 TTMVIYLLKLGVDVNAINRKGYTALDV 168
             +V  LLK G DVNA ++ G TA D+
Sbjct: 126 LEIVEVLLKHGADVNAQDKFGKTAFDI 152

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Query: 58  EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 117
           +G TPLH AA  G    + ++LS        R+  G T LHL  KN   E VK L+    
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAK-- 64
Query: 118 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNA 157
                N    DGNT  HLA       +V  L   G DVNA
Sbjct: 65  -GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 93  GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG 152
           G T LH   KN   E VK L   L+     N    DGNT LHLA       +V  LL  G
Sbjct: 9   GNTPLHNAAKNGHAEEVKKL---LSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 153 VDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
            DVNA ++ G T     E  A  +G  +IV  L+  GA
Sbjct: 66  ADVNARSKDGNTP----EHLAKKNGHHEIVKLLDAKGA 99

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 73/194 (37%), Gaps = 32/194 (16%)
Query: 7   VKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWA 66
           +KE + A +  A + D +  T LH +CS GH EI  E             + G +PLH A
Sbjct: 23  LKESILADKSLATRTDQDSRTALHWACSAGHTEIV-EFLLQLGVPVNDKDDAGWSPLHIA 81
Query: 67  AIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET----------- 115
           A  GR  I+  +L    Q   +   +G T LH     N++E    L+E            
Sbjct: 82  ASAGRDEIVKALLGKGAQVNAVNQ-NGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYE 140
Query: 116 -------------------LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVN 156
                              L      N+ D +GNT LHLA   +       L+  G  + 
Sbjct: 141 ATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIY 200
Query: 157 AINRKGYTALDVVE 170
             N++  T L V +
Sbjct: 201 IENKEEKTPLQVAK 214

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 73/194 (37%), Gaps = 32/194 (16%)
Query: 7   VKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWA 66
           +KE + A +  A + D +  T LH +CS GH EI  E             + G +PLH A
Sbjct: 22  LKESILADKSLATRTDQDSRTALHWACSAGHTEIV-EFLLQLGVPVNDKDDAGWSPLHIA 80
Query: 67  AIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET----------- 115
           A  GR  I+  +L    Q   +   +G T LH     N++E    L+E            
Sbjct: 81  ASAGRDEIVKALLGKGAQVNAVNQ-NGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYE 139
Query: 116 -------------------LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVN 156
                              L      N+ D +GNT LHLA   +       L+  G  + 
Sbjct: 140 ATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIY 199
Query: 157 AINRKGYTALDVVE 170
             N++  T L V +
Sbjct: 200 IENKEEKTPLQVAK 213

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 4/169 (2%)
Query: 21  KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 80
           KD  G T LHL+  KGH E+ +              + G TP+ WA     ++++  +LS
Sbjct: 73  KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS 132
Query: 81  LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGK 140
                  +R       LH    +   +  + L+         N+    G++ LH+A    
Sbjct: 133 KG-SDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIH---GDSPLHIAAREN 188
Query: 141 LTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAG 189
               V+  L    DV   N++G T L     ++    ALQ+  AL+++ 
Sbjct: 189 RYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDSA 237

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 79/198 (39%), Gaps = 36/198 (18%)
Query: 5   DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLH 64
           D +KE + A +  A + D +  T LH +CS GH EI  E             + G +PLH
Sbjct: 20  DELKERILADKSLATRTDQDSRTALHWACSAGHTEIV-EFLLQLGVPVNDKDDAGWSPLH 78
Query: 65  WAAIKGRINIIDEILSLNLQSAEMRTI--HGETVLHLTVKNNQYEAVKYLME-------- 114
            AA  G   I+  +L   ++ A +  +  +G T LH     N++E    L+E        
Sbjct: 79  IAASAGXDEIVKALL---VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK 135
Query: 115 ---------------TLNITKL-------ANMPDNDGNTILHLATAGKLTTMVIYLLKLG 152
                           L +  +        N+ D +GNT LHLA   +      +L+  G
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 153 VDVNAINRKGYTALDVVE 170
             +   N++  T L V +
Sbjct: 196 ASIYIENKEEKTPLQVAK 213

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 59/149 (39%), Gaps = 41/149 (27%)
Query: 21  KDLNGHTPLHLSCSKGHLE----ITREXXXXXXXXXXXXXN-EGRTPLHWAAIKGRINII 75
           +D  G+TPLHL+C +G L     +T+              N  G T LH A+I G + I+
Sbjct: 71  RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV 130
Query: 76  DEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHL 135
           + ++SL          +G T LHL V                   L N PD         
Sbjct: 131 ELLVSLGADVNAQEPCNGRTALHLAV------------------DLQN-PD--------- 162
Query: 136 ATAGKLTTMVIYLLKLGVDVNAINRKGYT 164
                   +V  LLK G DVN +  +GY+
Sbjct: 163 --------LVSLLLKCGADVNRVTYQGYS 183

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 59/149 (39%), Gaps = 41/149 (27%)
Query: 21  KDLNGHTPLHLSCSKGHLE----ITREXXXXXXXXXXXXXN-EGRTPLHWAAIKGRINII 75
           +D  G+TPLHL+C +G L     +T+              N  G T LH A+I G + I+
Sbjct: 74  RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV 133
Query: 76  DEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHL 135
           + ++SL          +G T LHL V                   L N PD         
Sbjct: 134 ELLVSLGADVNAQEPCNGRTALHLAV------------------DLQN-PD--------- 165
Query: 136 ATAGKLTTMVIYLLKLGVDVNAINRKGYT 164
                   +V  LLK G DVN +  +GY+
Sbjct: 166 --------LVSLLLKCGADVNRVTYQGYS 186

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 61/148 (41%), Gaps = 38/148 (25%)
Query: 21  KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 80
           +D +G TPLHL+   GHLEI  E             + G TPL  AA+ G + I++ +L 
Sbjct: 43  EDASGWTPLHLAAFNGHLEIV-EVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK 101
Query: 81  LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGK 140
                      +G  V                          N  D +G+T LHLA    
Sbjct: 102 -----------NGADV--------------------------NANDMEGHTPLHLAAMFG 124
Query: 141 LTTMVIYLLKLGVDVNAINRKGYTALDV 168
              +V  LLK G DVNA ++ G TA D+
Sbjct: 125 HLEIVEVLLKNGADVNAQDKFGKTAFDI 152

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 93  GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG 152
           G T LHL    +  E V+ L++        N  DNDG+T LHLA       +V  LLK G
Sbjct: 47  GNTPLHLAADYDHLEIVEVLLKH---GADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHG 103
Query: 153 VDVNAINRKGYTALDVVESDASNSGALQIVPAL 185
            DVNA ++ G TA D +  D  N    +I+  L
Sbjct: 104 ADVNAQDKFGKTAFD-ISIDNGNEDLAEILQKL 135

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 22  DLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL 81
           D +G TPLHL+   GHLEI  E             N G TPLH AAI+G + I+ E+L  
Sbjct: 44  DEDGLTPLHLAAQLGHLEIV-EVLLKYGADVNAEDNFGITPLHLAAIRGHLEIV-EVLLK 101
Query: 82  NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 117
           +      +   G+T   +++ N   E +  +++ LN
Sbjct: 102 HGADVNAQDKFGKTAFDISIDNGN-EDLAEILQKLN 136

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 76  DEILSLNLQSAEMRTIH--GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTIL 133
           DE+  L    A++  +   G T LHL  +    E V+ L   L      N  DN G T L
Sbjct: 28  DEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVL---LKYGADVNAEDNFGITPL 84
Query: 134 HLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPAL 185
           HLA       +V  LLK G DVNA ++ G TA D +  D  N    +I+  L
Sbjct: 85  HLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFD-ISIDNGNEDLAEILQKL 135

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 76  DEILSLNLQSAEMR--TIHGETVLHLTVKNNQYEAVKYLMET-LNITKLANMPDNDGNTI 132
           +E+L L  + A++    + G T LH    ++  + VK+L+E   NI    N PDN+G   
Sbjct: 54  EEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI----NQPDNEGWIP 109
Query: 133 LHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
           LH A +     +  YL+  G  V A+N +G T LD+
Sbjct: 110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 17/128 (13%)
Query: 4   ADIVKELLEA---------RQEFAWKKDLN-----GHTPLHLSCSKGHLEITREXXXXXX 49
           +D+ K+LLEA         R   A   D+N     G TPLHL+  +GHLEI  E      
Sbjct: 12  SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIV-EVLLKHG 70
Query: 50  XXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAV 109
                  + GRTPLH AA  G + I++ +L         +   G+T   +++ N   E +
Sbjct: 71  ADVNASDSWGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDISIDNGN-EDL 128
Query: 110 KYLMETLN 117
             +++ LN
Sbjct: 129 AEILQKLN 136

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 76  DEILSLNLQSAEMRTIH--GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTIL 133
           DE+  L    A++  +   G T LHL  K    E V+ L++        N  D+ G T L
Sbjct: 28  DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH---GADVNASDSWGRTPL 84
Query: 134 HLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
           HLA       +V  LL+ G DVNA ++ G TA D+
Sbjct: 85  HLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDI 119

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/125 (31%), Positives = 56/125 (44%), Gaps = 16/125 (12%)
Query: 4   ADIVKELLEA---------RQEFAWKKDLN-----GHTPLHLSCSKGHLEITREXXXXXX 49
           +D+ K+LLEA         R   A   D+N     GHTPLHL+   GHLEI  E      
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIV-EVLLKNG 70
Query: 50  XXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAV 109
                  N GRTPLH AA    + I+ E+L  +      +   G+T   +++ N   +  
Sbjct: 71  ADVNATGNTGRTPLHLAAWADHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 129
Query: 110 KYLME 114
           + L +
Sbjct: 130 EILQK 134

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 78  ILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLAT 137
           IL+ N          G T LHL       E V+ L++        N   N G T LHLA 
Sbjct: 32  ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKN---GADVNATGNTGRTPLHLAA 88
Query: 138 AGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
                 +V  LLK G DVNA ++ G TA D+
Sbjct: 89  WADHLEIVEVLLKHGADVNAQDKFGKTAFDI 119

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 6/150 (4%)
Query: 22  DLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL 81
           DLN  TPLH +  +GHL +  +              EG + +H AA  G  +I+  +++ 
Sbjct: 74  DLNS-TPLHWATRQGHLSMVVQLMKYGADPSLID-GEGCSCIHLAAQFGHTSIVAYLIAK 131
Query: 82  NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDN-DGNTILHLATAGK 140
             Q  +M   +G T L              L+ T N++   N+ D    NT LH A    
Sbjct: 132 G-QDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS--VNLGDKYHKNTALHWAVLAG 188
Query: 141 LTTMVIYLLKLGVDVNAINRKGYTALDVVE 170
            TT++  LL+ G +V+A N KG +ALD+ +
Sbjct: 189 NTTVISLLLEAGANVDAQNIKGESALDLAK 218

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 17/128 (13%)
Query: 4   ADIVKELLEA---------RQEFAWKKDLN-----GHTPLHLSCSKGHLEITREXXXXXX 49
           +D+ K+LLEA         R   A   D+N     G TPLHL+  +GHLEI  E      
Sbjct: 12  SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIV-EVLLKHG 70
Query: 50  XXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAV 109
                    GRTPLH AA  G + I++ +L         +   G+T   +++ N   E +
Sbjct: 71  ADVNASDIWGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDISIDNGN-EDL 128
Query: 110 KYLMETLN 117
             +++ LN
Sbjct: 129 AEILQKLN 136

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 17/128 (13%)
Query: 4   ADIVKELLEA---------RQEFAWKKDLN-----GHTPLHLSCSKGHLEITREXXXXXX 49
           +D+ K+LLEA         R   A   D+N     G TPLHL+  +GHLEI  E      
Sbjct: 12  SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIV-EVLLKHG 70
Query: 50  XXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAV 109
                    GRTPLH AA  G + I++ +L         +   G+T   +++ N   E +
Sbjct: 71  ADVNARDIWGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDISIDNGN-EDL 128
Query: 110 KYLMETLN 117
             +++ LN
Sbjct: 129 AEILQKLN 136

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 7/164 (4%)
Query: 7   VKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRE--XXXXXXXXXXXXXNEGRTPLH 64
           V+ELL ++     +KD +G  PLH S S    EIT                 + G TP H
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH 77
Query: 65  WAAIKGRINIIDEILSLNLQSAEMR-TIHGETVLHLTVKNNQYEAVKYLMETLNITKLAN 123
            A   G + ++  +    L+    + T  G T LHL V    +E  ++L+E     ++  
Sbjct: 78  IACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK- 136
Query: 124 MPDNDGNTILHLATAGKLTTMVIYLLKLGVD-VNAINRKGYTAL 166
             D      LH A +     ++  L  LG   VN  +++G+T L
Sbjct: 137 --DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 7/164 (4%)
Query: 7   VKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXX--XNEGRTPLH 64
           V+ELL ++     +KD +G  PLH S S    EIT                 + G TP H
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH 77
Query: 65  WAAIKGRINIIDEILSLNLQSAEMR-TIHGETVLHLTVKNNQYEAVKYLMETLNITKLAN 123
            A   G + ++  +    L+    + T  G T LHL V    +E  ++L+E     ++  
Sbjct: 78  IACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK- 136
Query: 124 MPDNDGNTILHLATAGKLTTMVIYLLKLGVD-VNAINRKGYTAL 166
             D      LH A +     ++  L  LG   VN  +++G+T L
Sbjct: 137 --DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 7/164 (4%)
Query: 7   VKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXX--XNEGRTPLH 64
           V+ELL ++     +KD +G  PLH S S    EIT                 + G TP H
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH 77
Query: 65  WAAIKGRINIIDEILSLNLQSAEMR-TIHGETVLHLTVKNNQYEAVKYLMETLNITKLAN 123
            A   G + ++  +    L+    + T  G T LHL V    +E  ++L+E     ++  
Sbjct: 78  IACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK- 136
Query: 124 MPDNDGNTILHLATAGKLTTMVIYLLKLGVD-VNAINRKGYTAL 166
             D      LH A +     ++  L  LG   VN  +++G+T L
Sbjct: 137 --DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 5/149 (3%)
Query: 17  FAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXX---XXXXXXNEGRTPLHWAAIKGRIN 73
            A + D +G TPLH++  +G+L                     N  +TPLH A I    +
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60
Query: 74  IIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDN-DGNTI 132
           ++  +++       +   HG+T  HL  ++     ++ L+++     L     N DG T 
Sbjct: 61  VVRLLVTAGASPMALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119
Query: 133 LHLATAGKLTTMVIYLLKLGVDVNAINRK 161
           LH+A   +    V  LL+ G D++A++ K
Sbjct: 120 LHVAVNTECQETVQLLLERGADIDAVDIK 148

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
           ++P+++G T LH A     T +V +L++ GV+VNA +  G+T L      A++   +Q+ 
Sbjct: 64  SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHC----AASCNNVQVC 119
Query: 183 PALEEAGA 190
             L E+GA
Sbjct: 120 KFLVESGA 127

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
           ++P+++G T LH A     T +V +L++ GV+VNA +  G+T L      A++   +Q+ 
Sbjct: 64  SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHC----AASCNNVQVC 119
Query: 183 PALEEAGA 190
             L E+GA
Sbjct: 120 KFLVESGA 127

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	445
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-36
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-34
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-33
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-33
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-31
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-31
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-09
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-34
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-31
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-34
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-26
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-32
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-28
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-23
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-32
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-31
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-31
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-25
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-13
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-32
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-31
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-26
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-22
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-19
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-32
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-31
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-28
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-24
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-32
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-30
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-28
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-16
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-31
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-29
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-28
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-27
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-31
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-31
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-29
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-25
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-31
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-31
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-29
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-27
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-31
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-31
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-24
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-10
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-31
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-30
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-28
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-31
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-31
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-30
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-24
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-30
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-30
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-24
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-30
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-30
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-29
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-26
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-24
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-19
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-29
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-25
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-20
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-29
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-27
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-27
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-25
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-22
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-21
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-28
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-27
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-25
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-23
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-20
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-28
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-27
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-19
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-14
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-13
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-28
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-21
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-16
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-13
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-28
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-27
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-21
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-18
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-28
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-27
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-22
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-22
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-21
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-20
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-14
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-27
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-27
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-26
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-25
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-04
2etb_A	256	Transient receptor potential cation channel subfam	1e-27
2etb_A	256	Transient receptor potential cation channel subfam	2e-17
2etb_A	256	Transient receptor potential cation channel subfam	2e-13
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-27
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-22
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-19
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-12
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-04
2rfa_A	232	Transient receptor potential cation channel subfa	2e-27
2rfa_A	232	Transient receptor potential cation channel subfa	2e-27
2rfa_A	232	Transient receptor potential cation channel subfa	1e-25
2rfa_A	232	Transient receptor potential cation channel subfa	4e-09
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-27
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-22
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-27
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-23
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-25
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-24
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-22
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-25
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-21
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-18
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-17
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-25
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-23
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-25
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-25
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-25
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-21
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-18
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-25
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-23
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-21
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-25
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-19
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-04
2pnn_A	273	Transient receptor potential cation channel subfa	2e-24
2pnn_A	273	Transient receptor potential cation channel subfa	5e-21
2pnn_A	273	Transient receptor potential cation channel subfa	7e-19
2pnn_A	273	Transient receptor potential cation channel subfa	3e-17
2pnn_A	273	Transient receptor potential cation channel subfa	6e-15
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-24
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-22
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-19
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-24
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-24
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-16
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-11
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-24
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-18
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-13
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-12
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-11
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-23
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-12
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-22
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-22
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-22
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-18
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-13
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-22
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-16
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-21
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-20
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-20
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-08
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-21
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-14
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-14
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-19
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-16
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-11
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-18
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-13
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-15
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-04

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  136 bits (346), Expect = 5e-36
 Identities = 57/200 (28%), Positives = 91/200 (45%), Gaps = 26/200 (13%)

Query: 2   HVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS 53
           H A      ++VK LLE  A           GHTPLH++  +GH+E    LL+ +   + 
Sbjct: 85  HCAARIGHTNMVKLLLENNANPN---LATTAGHTPLHIAAREGHVETVLALLEKEASQAC 141

Query: 54  LPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKY 111
           +   +G TPLH AA  G++ + + +L    + A       +G T LH+ V +N  + VK 
Sbjct: 142 M-TKKGFTPLHVAAKYGKVRVAELLLE---RDAHPNAAGKNGLTPLHVAVHHNNLDIVKL 197

Query: 112 LMET-LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVE 170
           L+    +     + P  +G T LH+A       +   LL+ G   NA + +G T L +  
Sbjct: 198 LLPRGGSP----HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHL-- 251

Query: 171 SDASNSGALQIVPALEEAGA 190
             A+  G  ++V  L    A
Sbjct: 252 --AAQEGHAEMVALLLSKQA 269

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  132 bits (334), Expect = 2e-34
 Identities = 60/200 (30%), Positives = 86/200 (43%), Gaps = 26/200 (13%)

Query: 2   HVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS 53
           HVA       + + LLE  A          NG TPLH++    +L+I + LL       S
Sbjct: 151 HVAAKYGKVRVAELLLERDAHPN---AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS 207

Query: 54  LPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKY 111
            P   G TPLH AA + ++ +   +L            ++ G T LHL  +    E V  
Sbjct: 208 -PAWNGYTPLHIAAKQNQVEVARSLLQ---YGGSANAESVQGVTPLHLAAQEGHAEMVAL 263

Query: 112 LMET-LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVE 170
           L+    N     N+ +  G T LHL        +   L+K GV V+A  R GYT L V  
Sbjct: 264 LLSKQANG----NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV-- 317

Query: 171 SDASNSGALQIVPALEEAGA 190
             AS+ G +++V  L +  A
Sbjct: 318 --ASHYGNIKLVKFLLQHQA 335

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  129 bits (326), Expect = 3e-33
 Identities = 58/200 (29%), Positives = 89/200 (44%), Gaps = 26/200 (13%)

Query: 2   HVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS 53
           HVA      DIVK LL              NG+TPLH++  +  +E+ R LL+     ++
Sbjct: 184 HVAVHHNNLDIVKLLLPRGGSPH---SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANA 240

Query: 54  LPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKY 111
               +G TPLH AA +G   ++  +LS   + A   +    G T LHL  +         
Sbjct: 241 -ESVQGVTPLHLAAQEGHAEMVALLLS---KQANGNLGNKSGLTPLHLVAQEGHVPVADV 296

Query: 112 LMET-LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVE 170
           L++  + +    +     G T LH+A+      +V +LL+   DVNA  + GY+ L    
Sbjct: 297 LIKHGVMV----DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQ-- 350

Query: 171 SDASNSGALQIVPALEEAGA 190
             A+  G   IV  L + GA
Sbjct: 351 --AAQQGHTDIVTLLLKNGA 368

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  127 bits (323), Expect = 6e-33
 Identities = 50/201 (24%), Positives = 81/201 (40%), Gaps = 28/201 (13%)

Query: 2   HVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS 53
           H+A      ++ + LL+          + + G TPLHL+  +GH E+   LL    + + 
Sbjct: 217 HIAAKQNQVEVARSLLQYGGSAN---AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL 273

Query: 54  LPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKY 111
             +  G TPLH  A +G + + D ++         +  T  G T LH+       + VK+
Sbjct: 274 -GNKSGLTPLHLVAQEGHVPVADVLIK---HGVMVDATTRMGYTPLHVASHYGNIKLVKF 329

Query: 112 LMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVV 169
           L     +   A  N     G + LH A     T +V  LLK G   N ++  G T L + 
Sbjct: 330 L-----LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI- 383

Query: 170 ESDASNSGALQIVPALEEAGA 190
              A   G + +   L+    
Sbjct: 384 ---AKRLGYISVTDVLKVVTD 401

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  123 bits (312), Expect = 2e-31
 Identities = 57/199 (28%), Positives = 84/199 (42%), Gaps = 24/199 (12%)

Query: 2   HVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS 53
           HVA       IVK LL+  A        ++   TPLH++   GH E+ + LL+    +++
Sbjct: 19  HVASFMGHLPIVKNLLQRGASPN---VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75

Query: 54  LPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLM 113
               + +TPLH AA  G  N++ ++L  N  +  + T  G T LH+  +    E V  L 
Sbjct: 76  -KAKDDQTPLHCAARIGHTNMV-KLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL- 132

Query: 114 ETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVES 171
               + K A        G T LH+A       +   LL+     NA  + G T L V   
Sbjct: 133 ----LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHV--- 185

Query: 172 DASNSGALQIVPALEEAGA 190
            A +   L IV  L   G 
Sbjct: 186 -AVHHNNLDIVKLLLPRGG 203

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  122 bits (309), Expect = 6e-31
 Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 17/175 (9%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 79
               +G TPLH++   GHL I + LL+     +   + +  TPLH AA  G   +   +L
Sbjct: 9   GGGESGLTPLHVASFMGHLPIVKNLLQRGASPNV-SNVKVETPLHMAARAGHTEVAKYLL 67

Query: 80  SLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHL 135
                 A    +    +T LH   +      VK L     +   A  N+    G+T LH+
Sbjct: 68  Q---NKAKVNAKAKDDQTPLHCAARIGHTNMVKLL-----LENNANPNLATTAGHTPLHI 119

Query: 136 ATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
           A        V+ LL+       + +KG+T L V    A+  G +++   L E  A
Sbjct: 120 AAREGHVETVLALLEKEASQACMTKKGFTPLHV----AAKYGKVRVAELLLERDA 170

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  117 bits (295), Expect = 5e-29
 Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 21/175 (12%)

Query: 5   DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTP 62
           ++V  LL   A        + +G TPLHL   +GH+ +   L+K    + +     G TP
Sbjct: 259 EMVALLLSKQANGN---LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA-TTRMGYTP 314

Query: 63  LHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITK 120
           LH A+  G I ++  +L      A    +T  G + LH   +    + V  L     +  
Sbjct: 315 LHVASHYGNIKLVKFLLQ---HQADVNAKTKLGYSPLHQAAQQGHTDIVTLL-----LKN 366

Query: 121 LA--NMPDNDGNTILHLATAGKLTTMVIYLLKL---GVDVNAINRKGYTALDVVE 170
            A  N   +DG T L +A      ++   L  +      V   ++   +  + V+
Sbjct: 367 GASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVD 421

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  101 bits (254), Expect = 1e-23
 Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 22/165 (13%)

Query: 1   MHVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLS 52
           +H+        +   L++     +        G+TPLH++   G++++ + LL+   D++
Sbjct: 282 LHLVAQEGHVPVADVLIKHGVMVD---ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN 338

Query: 53  SLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 112
           +     G +PLH AA +G  +I+  +L  N  S    +  G T L +  +         L
Sbjct: 339 A-KTKLGYSPLHQAAQQGHTDIV-TLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396

Query: 113 METLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNA 157
               + T    + D    +                +L +  D   
Sbjct: 397 KVVTDETSFVLVSDKHRMSFPETVD---------EILDVSEDEGE 432

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 56.3 bits (137), Expect = 8e-09
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
                 G T LH+A+      +V  LL+ G   N  N K  T L +    A+ +G  ++ 
Sbjct: 8   GGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHM----AARAGHTEVA 63

Query: 183 PALEEAGA 190
             L +  A
Sbjct: 64  KYLLQNKA 71

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  125 bits (317), Expect = 2e-34
 Identities = 42/170 (24%), Positives = 66/170 (38%), Gaps = 16/170 (9%)

Query: 25  GHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQ 84
               +H   ++G L+  +E L+   +L + PD  G TPL WA+  G I  +  +L     
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE---W 58

Query: 85  SA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAGK 140
            A   +     E+ L L       + V  L     + +    N+ D +G T L  A  G 
Sbjct: 59  GADPHILAKERESALSLASTGGYTDIVGLL-----LERDVDINIYDWNGGTPLLYAVRGN 113

Query: 141 LTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
               V  LL  G D+      GYT +D+    A   G  ++   +E    
Sbjct: 114 HVKCVEALLARGADLTTEADSGYTPMDL----AVALGYRKVQQVIENHIL 159

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  117 bits (296), Expect = 2e-31
 Identities = 36/164 (21%), Positives = 60/164 (36%), Gaps = 13/164 (7%)

Query: 5   DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLH 64
           D +KE L        K D  G TPL  + + G +E  R LL+   D       E  + L 
Sbjct: 16  DQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI-LAKERESALS 74

Query: 65  WAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA 122
            A+  G  +I+  +L    +     +   +G T L   V+ N  + V+ L     + + A
Sbjct: 75  LASTGGYTDIVGLLLE---RDVDINIYDWNGGTPLLYAVRGNHVKCVEAL-----LARGA 126

Query: 123 --NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYT 164
                 + G T + LA A     +   +    + +   N     
Sbjct: 127 DLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  124 bits (314), Expect = 4e-34
 Identities = 39/171 (22%), Positives = 65/171 (38%), Gaps = 17/171 (9%)

Query: 24  NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL 83
                +H   ++G +      ++ +  ++   D EG TPL WAA  G+I +++ +L    
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINH-TDEEGFTPLMWAAAHGQIAVVEFLLQ--- 57

Query: 84  QSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAG 139
             A  ++     E+ L L       + VK L     +      N  D +G T L  A  G
Sbjct: 58  NGADPQLLGKGRESALSLACSKGYTDIVKML-----LDCGVDVNEYDWNGGTPLLYAVHG 112

Query: 140 KLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
                V  LL+ G D       GY ++D+    A   G   +   +E    
Sbjct: 113 NHVKCVKMLLESGADPTIETDSGYNSMDL----AVALGYRSVQQVIESHLL 159

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  104 bits (262), Expect = 1e-26
 Identities = 31/168 (18%), Positives = 53/168 (31%), Gaps = 24/168 (14%)

Query: 2   HVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS 53
           H          +   +E           D  G TPL  + + G + +   LL+   D   
Sbjct: 8   HQLAAQGEMLYLATRIEQENVIN---HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 64

Query: 54  LPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKY 111
           L      + L  A  KG  +I+  +L              +G T L   V  N  + VK 
Sbjct: 65  L-GKGRESALSLACSKGYTDIVKMLLD---CGVDVNEYDWNGGTPLLYAVHGNHVKCVKM 120

Query: 112 LMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNA 157
           L     +   A   +  + G   + LA A    ++   +    + +  
Sbjct: 121 L-----LESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQ 163

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  120 bits (304), Expect = 1e-32
 Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 16/171 (9%)

Query: 24  NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL 83
                +   C +G+    R  L    +  +  D+ G +PLHWA  +GR  +++ ++    
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM--- 60

Query: 84  QSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAG 139
           + A   +     +T LHL   +   + V+ L     +   A  N  +  GN  LH A   
Sbjct: 61  RGARINVMNRGDDTPLHLAASHGHRDIVQKL-----LQYKADINAVNEHGNVPLHYACFW 115

Query: 140 KLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
               +   L+  G  V+  N+ G   +D     A       +    E+ G 
Sbjct: 116 GQDQVAEDLVANGALVSICNKYGEMPVDK----AKAPLRELLRERAEKMGQ 162

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  109 bits (276), Expect = 2e-28
 Identities = 37/189 (19%), Positives = 68/189 (35%), Gaps = 29/189 (15%)

Query: 2   HVA------DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLP 55
                      V+  L+  +    + D +G +PLH +C +G   +   L+     ++   
Sbjct: 10  FTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV-M 68

Query: 56  DNEGRTPLHWAAIKGRINIIDEILSLNLQSAEM--RTIHGETVLHLTVKNNQYEAVKYLM 113
           +    TPLH AA  G  +I+ ++L      A++     HG   LH      Q +  + L 
Sbjct: 69  NRGDDTPLHLAASHGHRDIVQKLLQ---YKADINAVNEHGNVPLHYACFWGQDQVAEDL- 124

Query: 114 ETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVES 171
               +   A  ++ +  G   +  A A     +     K+G ++N I  K          
Sbjct: 125 ----VANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYK---------- 170

Query: 172 DASNSGALQ 180
           D    G  +
Sbjct: 171 DTFWKGTTR 179

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 94.8 bits (237), Expect = 4e-23
 Identities = 32/137 (23%), Positives = 49/137 (35%), Gaps = 11/137 (8%)

Query: 56  DNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET 115
             E    +     +G    +   L            HG + LH   +  +   V+ L   
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEML--- 58

Query: 116 LNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDA 173
             I + A  N+ +   +T LHLA +     +V  LL+   D+NA+N  G   L      A
Sbjct: 59  --IMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPL----HYA 112

Query: 174 SNSGALQIVPALEEAGA 190
              G  Q+   L   GA
Sbjct: 113 CFWGQDQVAEDLVANGA 129

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  122 bits (309), Expect = 1e-32
 Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 16/175 (9%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 79
            +  N  +PLH +   GH++I   L++   ++ +    + RTPL  AA    +  +  ++
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDT-CSEDQRTPLMEAAENNHLEAVKYLI 64

Query: 80  SLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMET--LNITKLANMPDNDGNTILHL 135
                 A  + +   G T LHL  K   YE V+YL+    +++    N  D+ G T +  
Sbjct: 65  K---AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV----NCQDDGGWTPMIW 117

Query: 136 ATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
           AT  K   +V  LL  G D+N  + +    L      A+ SG + I   L  A  
Sbjct: 118 ATEYKHVDLVKLLLSKGSDINIRDNEENICLHW----AAFSGCVDIAEILLAAKC 168

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  119 bits (302), Expect = 2e-31
 Identities = 48/199 (24%), Positives = 76/199 (38%), Gaps = 23/199 (11%)

Query: 2   HVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS 53
           H A      DI   L++  A  +       +  TPL  +    HLE  + L+K    +  
Sbjct: 16  HAAAEAGHVDICHMLVQAGANID---TCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72

Query: 54  LPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLM 113
             D EG T LH AA KG   ++  +LS        +   G T +    +    + VK L 
Sbjct: 73  -KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL- 130

Query: 114 ETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVES 171
               ++K +  N+ DN+ N  LH A       +   LL    D++A+N  G + L +   
Sbjct: 131 ----LSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHI--- 183

Query: 172 DASNSGALQIVPALEEAGA 190
            A+       V       +
Sbjct: 184 -AARENRYDCVVLFLSRDS 201

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  119 bits (301), Expect = 2e-31
 Identities = 46/204 (22%), Positives = 82/204 (40%), Gaps = 33/204 (16%)

Query: 2   HVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK---LDPD 50
             A      + VK L++  A  +    KD  G T LHL+  KGH E+ + LL    +D +
Sbjct: 49  MEAAENNHLEAVKYLIKAGALVD---PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVN 105

Query: 51  LSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEA 108
                D+ G TP+ WA     ++++  +LS   + +   +R       LH    +   + 
Sbjct: 106 CQ---DDGGWTPMIWATEYKHVDLVKLLLS---KGSDINIRDNEENICLHWAAFSGCVDI 159

Query: 109 VKYLMETLNITKLANM--PDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTAL 166
            + L     +    ++   +  G++ LH+A        V+  L    DV   N++G T L
Sbjct: 160 AEIL-----LAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL 214

Query: 167 DVVESDASNSGALQIVPALEEAGA 190
                 AS +  +     + +A  
Sbjct: 215 QC----ASLNSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  101 bits (255), Expect = 5e-25
 Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 19/163 (11%)

Query: 2   HVA------DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLP 55
           H+A      ++V+ LL   Q     +D  G TP+  +    H+++ + LL    D++   
Sbjct: 82  HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI-R 140

Query: 56  DNEGRTPLHWAAIKGRINIIDEILSLNLQSAEM--RTIHGETVLHLTVKNNQYEAVKYLM 113
           DNE    LHWAA  G ++I + +L+      ++    IHG++ LH+  + N+Y+ V    
Sbjct: 141 DNEENICLHWAAFSGCVDIAEILLA---AKCDLHAVNIHGDSPLHIAARENRYDCVVLF- 196

Query: 114 ETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVD 154
               +++ +   + + +G T L  A+        + + K   D
Sbjct: 197 ----LSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 67.4 bits (166), Expect = 5e-13
 Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 11/106 (10%)

Query: 87  EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAGKLTTM 144
           +M   +  + LH   +    +    L     +   A  +    D  T L  A        
Sbjct: 5   KMEHQNKRSPLHAAAEAGHVDICHML-----VQAGANIDTCSEDQRTPLMEAAENNHLEA 59

Query: 145 VIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
           V YL+K G  V+  + +G T L +    A+  G  ++V  L   G 
Sbjct: 60  VKYLIKAGALVDPKDAEGSTCLHL----AAKKGHYEVVQYLLSNGQ 101

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  123 bits (312), Expect = 2e-32
 Identities = 44/200 (22%), Positives = 78/200 (39%), Gaps = 29/200 (14%)

Query: 2   HVA------DIVKELLEARQEFAW--KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS 53
           H A        VK LL+     A       + HTPL  +C  G  +    LL+    +  
Sbjct: 97  HEACLGGHLSCVKILLKHG---AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ- 152

Query: 54  LPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKY 111
            P+++  +P+H AA +G +  ++ +++        + +  H  T L+L  +N Q   VK 
Sbjct: 153 -PESDLASPIHEAARRGHVECVNSLIA---YGGNIDHKISHLGTPLYLACENQQRACVKK 208

Query: 112 LMETLNITKLANM-PDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVE 170
           L     +   A++      ++ LH         +   L+  G D  A N +G   +++  
Sbjct: 209 L-----LESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVEL-- 261

Query: 171 SDASNSGALQIVPALEEAGA 190
                   L  +  LE  GA
Sbjct: 262 --VPPESPLAQL-FLEREGA 278

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  120 bits (304), Expect = 2e-31
 Identities = 36/192 (18%), Positives = 71/192 (36%), Gaps = 18/192 (9%)

Query: 2   HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRT 61
              D     L +         ++  +P+H +   GH    R L+     ++     +  +
Sbjct: 38  GPRDFPGIRLLS--NPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNI-ITADHVS 94

Query: 62  PLHWAAIKGRINIIDEILSLNLQSAEM--RTIHGETVLHLTVKNNQYEAVKYLMETLNIT 119
           PLH A + G ++ +  +L      A++   T    T L     +  ++ V  L     + 
Sbjct: 95  PLHEACLGGHLSCVKILLK---HGAQVNGVTADWHTPLFNACVSGSWDCVNLL-----LQ 146

Query: 120 KLANM-PDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGA 178
             A++ P++D  + +H A        V  L+  G +++       T L +    A  +  
Sbjct: 147 HGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYL----ACENQQ 202

Query: 179 LQIVPALEEAGA 190
              V  L E+GA
Sbjct: 203 RACVKKLLESGA 214

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  107 bits (270), Expect = 1e-26
 Identities = 43/204 (21%), Positives = 75/204 (36%), Gaps = 34/204 (16%)

Query: 1   MHVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLS 52
           MH A        ++ L+              +  +PLH +C  GHL   + LLK    ++
Sbjct: 63  MHEAAIHGHQLSLRNLISQGWAVN---IITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119

Query: 53  SLPDNEGRTPLHWAAIKGRINIIDEIL-----SLNLQSAEMRTIHGETVLHLTVKNNQYE 107
                +  TPL  A + G  + +  +L     S+  +S         + +H   +    E
Sbjct: 120 G-VTADWHTPLFNACVSGSWDCV-NLLLQHGASVQPES------DLASPIHEAARRGHVE 171

Query: 108 AVKYLMET-LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTAL 166
            V  L+    NI    +   +   T L+LA   +    V  LL+ G DVN   +   + L
Sbjct: 172 CVNSLIAYGGNI----DHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPL 226

Query: 167 DVVESDASNSGALQIVPALEEAGA 190
                    + + ++   L + GA
Sbjct: 227 HA----VVRTASEELACLLMDFGA 246

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 96.4 bits (241), Expect = 1e-22
 Identities = 35/194 (18%), Positives = 59/194 (30%), Gaps = 29/194 (14%)

Query: 5   DIVKELLEA----RQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGR 60
                L+            +  ++G  P       G   ++  L+               
Sbjct: 9   HHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMG--------DAVSDW 60

Query: 61  TPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNI 118
           +P+H AAI G    +  ++S   Q     + T    + LH          VK L     +
Sbjct: 61  SPMHEAAIHGHQLSLRNLIS---QGWAVNIITADHVSPLHEACLGGHLSCVKIL-----L 112

Query: 119 TKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNS 176
              A  N    D +T L  A        V  LL+ G  V   +    + +      A+  
Sbjct: 113 KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHE----AARR 167

Query: 177 GALQIVPALEEAGA 190
           G ++ V +L   G 
Sbjct: 168 GHVECVNSLIAYGG 181

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 87.5 bits (218), Expect = 1e-19
 Identities = 33/166 (19%), Positives = 58/166 (34%), Gaps = 23/166 (13%)

Query: 31  LSCSKGHLEITRELLKLDPDLSSLPDNE----GRTPLHWAAIKGRINIIDEILSLNLQSA 86
           +  S  H   +  L+     ++S+   +    G  P       G        + L     
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPG--------IRLLSNPL 52

Query: 87  EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAGKLTTM 144
               +   + +H    +    +++ L     I++    N+   D  + LH A  G   + 
Sbjct: 53  MGDAVSDWSPMHEAAIHGHQLSLRNL-----ISQGWAVNIITADHVSPLHEACLGGHLSC 107

Query: 145 VIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
           V  LLK G  VN +    +T L     +A  SG+   V  L + GA
Sbjct: 108 VKILLKHGAQVNGVTADWHTPL----FNACVSGSWDCVNLLLQHGA 149

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  120 bits (303), Expect = 8e-32
 Identities = 58/203 (28%), Positives = 82/203 (40%), Gaps = 24/203 (11%)

Query: 2   HVA------DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK--LDPDLSS 53
           H A        V+ELL ++     +KD +G  PLH S S    EIT  LL    + +L  
Sbjct: 7   HQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD 66

Query: 54  LPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKY 111
            PD+ G TP H A   G + ++ + L            T  G T LHL V    +E  ++
Sbjct: 67  YPDDSGWTPFHIACSVGNLEVV-KSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125

Query: 112 LMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGV-DVNAINRKGYTALDV 168
           L     I   A   + D      LH A +     ++  L  LG   VN  +++G+T L  
Sbjct: 126 L-----IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH 180

Query: 169 VESDASNSGALQIVPAL-EEAGA 190
               A   G       L E+ GA
Sbjct: 181 ----ALAEGHGDAAVLLVEKYGA 199

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  117 bits (297), Expect = 5e-31
 Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 13/171 (7%)

Query: 25  GHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILS--LN 82
            + PLH +C +      +ELL   P L    D +GR PLHW+       I   +LS   N
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 83  LQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL---NITKLANMPDNDGNTILHLATAG 139
           +   +     G T  H+       E VK L +     ++    N   N G T LHLA   
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL----NKITNQGVTCLHLAVGK 117

Query: 140 KLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
           K   +  +L++ G  V   ++     L      A++ G+L+++  L   G 
Sbjct: 118 KWFEVSQFLIENGASVRIKDKFNQIPLHR----AASVGSLKLIELLCGLGK 164

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  110 bits (278), Expect = 3e-28
 Identities = 44/174 (25%), Positives = 68/174 (39%), Gaps = 19/174 (10%)

Query: 5   DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELL--KLDPDLSSLPDNEGR 60
           +I   LL            D +G TP H++CS G+LE+ + L    L PDL+    N+G 
Sbjct: 50  EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNK-ITNQGV 108

Query: 61  TPLHWAAIKGRINIIDEILSLNLQSAEM--RTIHGETVLHLTVKNNQYEAVKYLMETLNI 118
           T LH A  K    +   ++      A +  +    +  LH        + ++ L      
Sbjct: 109 TCLHLAVGKKWFEVSQFLIE---NGASVRIKDKFNQIPLHRAASVGSLKLIELL-----C 160

Query: 119 TKLA---NMPDNDGNTILHLATAGKLTTMVIYLL-KLGVDVNAINRKGYTALDV 168
                  N  D  G T L  A A       + L+ K G + + ++ KG  A DV
Sbjct: 161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  100 bits (252), Expect = 1e-24
 Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 7/120 (5%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 79
           K    G T LHL+  K   E+++ L++    +    D   + PLH AA  G + +I+ + 
Sbjct: 102 KITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI-KDKFNQIPLHRAASVGSLKLIELLC 160

Query: 80  SLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL--NITKLANMPDNDGNTILHLAT 137
            L   +   +   G T L   +     +A   L+E          ++ DN G     +A 
Sbjct: 161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY----DLVDNKGAKAEDVAL 216

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  120 bits (302), Expect = 9e-32
 Identities = 33/167 (19%), Positives = 62/167 (37%), Gaps = 16/167 (9%)

Query: 18  AWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDE 77
             ++  +   PLH +  +G+L   RE L     ++ L D  G T L+WA   G  +I+ E
Sbjct: 66  VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL-DKAGSTALYWACHGGHKDIV-E 123

Query: 78  ILSLNLQSAEM--RTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTIL 133
           +L     + E+  +   G+T LH        + V+ L     + K A  ++ + +     
Sbjct: 124 ML-FTQPNIELNQQNKLGDTALHAAAWKGYADIVQLL-----LAKGARTDLRNIEKKLAF 177

Query: 134 HLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQ 180
            +AT     +++             N + Y        D+       
Sbjct: 178 DMATNAACASLLKKKQGTDAVRTLSNAEDYLDD----EDSDLEHHHH 220

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  114 bits (288), Expect = 9e-30
 Identities = 38/191 (19%), Positives = 59/191 (30%), Gaps = 22/191 (11%)

Query: 4   ADIVKELL--EARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRT 61
                EL   E              T      SKG   +       +             
Sbjct: 25  PRTPDELYIEEGDII---YITDMSDTNWWKGTSKGRTGLIPSNYVAEQA------ESIDN 75

Query: 62  PLHWAAIKGRINIIDEILSLNLQSAEM--RTIHGETVLHLTVKNNQYEAVKYLMETLNIT 119
           PLH AA +G ++ + E L        +      G T L+        + V+ L    NI 
Sbjct: 76  PLHEAAKRGNLSWLRECLD---NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE 132

Query: 120 KLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGAL 179
              N  +  G+T LH A       +V  LL  G   +  N +   A D+    A+N+   
Sbjct: 133 L--NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDM----ATNAACA 186

Query: 180 QIVPALEEAGA 190
            ++   +   A
Sbjct: 187 SLLKKKQGTDA 197

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  110 bits (278), Expect = 2e-28
 Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 17/169 (10%)

Query: 24  NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL 83
            G   +  +          EL   + D+  +  +   T       KGR  +I        
Sbjct: 11  PGQVKVFRALYTFEPRTPDELYIEEGDIIYI-TDMSDTNWWKGTSKGRTGLIPSNY---- 65

Query: 84  QSAEMRTIHGETVLHLTVKNNQYEAVKYLMET-LNITKLANMPDNDGNTILHLATAGKLT 142
                +    +  LH   K      ++  ++  + +    N  D  G+T L+ A  G   
Sbjct: 66  --VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV----NGLDKAGSTALYWACHGGHK 119

Query: 143 TMVIYLL-KLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
            +V  L  +  +++N  N+ G TAL      A+  G   IV  L   GA
Sbjct: 120 DIVEMLFTQPNIELNQQNKLGDTAL----HAAAWKGYADIVQLLLAKGA 164

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 76.9 bits (190), Expect = 2e-16
 Identities = 23/139 (16%), Positives = 39/139 (28%), Gaps = 18/139 (12%)

Query: 55  PDNEGRTPLHWAAIKGRINIIDEILSLNLQSAE--MRTIHGETVLHLTVKNNQYEAVKYL 112
           P   G+  +  A         DE+     +  +    T   +T         +   +   
Sbjct: 8   PVKPGQVKVFRALYTFEPRTPDELYI---EEGDIIYITDMSDTNWWKGTSKGRTGLIPSN 64

Query: 113 METLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESD 172
                            +  LH A      + +   L   V VN +++ G TAL      
Sbjct: 65  Y--------VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYW---- 112

Query: 173 ASNSGALQIVPAL-EEAGA 190
           A + G   IV  L  +   
Sbjct: 113 ACHGGHKDIVEMLFTQPNI 131

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 9/63 (14%), Positives = 16/63 (25%), Gaps = 4/63 (6%)

Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
             P   G   +  A           L     D+  I     T         ++ G   ++
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNW----WKGTSKGRTGLI 61

Query: 183 PAL 185
           P+ 
Sbjct: 62  PSN 64

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  120 bits (303), Expect = 2e-31
 Identities = 44/188 (23%), Positives = 72/188 (38%), Gaps = 12/188 (6%)

Query: 5   DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLH 64
            ++ + +        + D  G T LHL+      +  + LL+   D +   DN GRTPLH
Sbjct: 37  AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI-QDNMGRTPLH 95

Query: 65  WAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA-- 122
            A       +   ++       + R   G T L L  +      ++ L     I   A  
Sbjct: 96  AAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL-----INSHADV 150

Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
           N  D+ G + LH A A       + LLK G + +  N +  T L +    A+  G+ +  
Sbjct: 151 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL----AAREGSYETA 206

Query: 183 PALEEAGA 190
             L +  A
Sbjct: 207 KVLLDHFA 214

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  118 bits (298), Expect = 6e-31
 Identities = 37/177 (20%), Positives = 64/177 (36%), Gaps = 20/177 (11%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLK---LDPDLSSLPDNEGRTPLHWAAIKGRINIID 76
            +D  G TPLH + S     + + L++    D D      ++G TPL  AA      +++
Sbjct: 85  IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR---MHDGTTPLILAARLAVEGMLE 141

Query: 77  EILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMET-LNITKLANMPDNDGNTIL 133
           ++++     A        G++ LH     N  +A   L++   N     +M +N   T L
Sbjct: 142 DLIN---SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK----DMQNNREETPL 194

Query: 134 HLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
            LA           LL    + +  +       D+    A       IV  L+    
Sbjct: 195 FLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI----AQERMHHDIVRLLDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  114 bits (289), Expect = 1e-29
 Identities = 42/188 (22%), Positives = 70/188 (37%), Gaps = 28/188 (14%)

Query: 20  KKDLNGHTPLHLSCSKG-------------HLEITRELLKLDPDLSSLPDNEGRTPLHWA 66
            +  +G TPL ++   G                +  + +     L +  D  G T LH A
Sbjct: 5   VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA 64

Query: 67  AIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMET--LNITKLA 122
           A   R +    +L     SA   ++   G T LH  V  +     + L+     ++    
Sbjct: 65  ARYSRSDAAKRLLE---ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL---- 117

Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
           +   +DG T L LA    +  M+  L+    DVNA++  G +AL      A+    +   
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW----AAAVNNVDAA 173

Query: 183 PALEEAGA 190
             L + GA
Sbjct: 174 VVLLKNGA 181

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  103 bits (260), Expect = 1e-25
 Identities = 34/168 (20%), Positives = 63/168 (37%), Gaps = 19/168 (11%)

Query: 2   HVA------DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLP 55
           H A       + + L+  R      +  +G TPL L+       +  +L+    D+++  
Sbjct: 95  HAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-V 153

Query: 56  DNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLM 113
           D+ G++ LHWAA    ++    +L      A  +M+    ET L L  +   YE  K L 
Sbjct: 154 DDLGKSALHWAAAVNNVDAAVVLLK---NGANKDMQNNREETPLFLAAREGSYETAKVL- 209

Query: 114 ETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAIN 159
               +   A  ++ D+       +A       +V  L       +  +
Sbjct: 210 ----LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHHH 253

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  122 bits (309), Expect = 2e-31
 Identities = 23/191 (12%), Positives = 56/191 (29%), Gaps = 30/191 (15%)

Query: 2   HVA------DIVKELLEARQEFAW----KKDLNGHTPLHLSCSKGHLEITRELLKLDPDL 51
             A      + +  +++     +       +  G++ LH +      ++    +++  D+
Sbjct: 178 MRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV 237

Query: 52  SSLPDNEGRTPLHWAAIKGRINIIDEILS----LNLQSAE--------MRTIHGETVLHL 99
           +   DNE   PL+ +     + +  E+L       +Q+             +     +  
Sbjct: 238 NM-EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPA 296

Query: 100 TVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNA 157
               ++ E ++ L       KL       N G              +    L     V  
Sbjct: 297 AADPSKQEVLQLL-----QEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRT 351

Query: 158 INRKGYTALDV 168
            +R    +  V
Sbjct: 352 RSRSRARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  121 bits (306), Expect = 5e-31
 Identities = 38/205 (18%), Positives = 76/205 (37%), Gaps = 31/205 (15%)

Query: 2   HVA------DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLP 55
           H+A      D+V  L+E            G  P  L       E+     ++   +    
Sbjct: 89  HLAVMANKTDLVVALVE-------GAKERGQMPESLLNECDEREVN----EIGSHV---K 134

Query: 56  DNEGRTPLHWAAIKGRINIIDEILSLNLQ---SAEMRTIHGETVLHLTVKNNQYEAVKYL 112
             +G+T LHW    G   +  E++ + +Q   S   +    ET L   ++    EA+  +
Sbjct: 135 HCKGQTALHWCVGLGPEYL--EMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLM 192

Query: 113 METLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVE 170
           M+T+        +  +  GN+ LH A       + +  +++G+DVN  + +    L +  
Sbjct: 193 MDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYL-- 250

Query: 171 SDASNSGALQIVPALEEAGARRCDQ 195
             +  +  + +   L +       Q
Sbjct: 251 --SVRAAMVLLTKELLQKTDVFLIQ 273

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  117 bits (296), Expect = 1e-29
 Identities = 35/183 (19%), Positives = 65/183 (35%), Gaps = 28/183 (15%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 79
           K D      +H++  KG  +  R L++     +   +  G T LH A   G ++    + 
Sbjct: 15  KSDDENMEKIHVAARKGQTDEVRRLIETGVSPTI-QNRFGCTALHLACKFGCVDTAKYLA 73

Query: 80  SLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET-----------------LNITKL- 121
           S           HG+  +HL V  N+ + V  L+E                    + ++ 
Sbjct: 74  S---VGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIG 130

Query: 122 ANMPDNDGNTILHLATA--GKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGAL 179
           +++    G T LH       +   M+  L++LG    A ++   T L      A      
Sbjct: 131 SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMR----AMEFRNR 186

Query: 180 QIV 182
           + +
Sbjct: 187 EAL 189

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  111 bits (280), Expect = 2e-27
 Identities = 32/187 (17%), Positives = 62/187 (33%), Gaps = 23/187 (12%)

Query: 21  KDLNGHTPLHLSCSKG--HLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEI 78
           K   G T LH     G  +LE+ + L++L    ++  D    TPL  A        +D +
Sbjct: 134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA-KDKADETPLMRAMEFRNREALDLM 192

Query: 79  LSLNLQSA----EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTI 132
           +      +    +     G + LH  +  N  +          +      NM DN+    
Sbjct: 193 MDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRF-----VEMGIDVNMEDNEHTVP 247

Query: 133 LHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESD---------ASNSGALQIVP 183
           L+L+    +  +   LL+            +    V+            A++    +++ 
Sbjct: 248 LYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQ 307

Query: 184 ALEEAGA 190
            L+E   
Sbjct: 308 LLQEKLD 314

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 86.1 bits (214), Expect = 1e-18
 Identities = 20/157 (12%), Positives = 38/157 (24%), Gaps = 31/157 (19%)

Query: 2   HVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS 53
           H A      D+    +E          +D     PL+LS     + +T+ELL+       
Sbjct: 216 HWAILINWEDVAMRFVEMGIDVN---MEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLI 272

Query: 54  L------------PDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTV 101
                                +  AA   +  ++ ++L   L         G        
Sbjct: 273 QACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVL-QLLQEKLDEVVRSLNTGAGGAVKRK 331

Query: 102 KNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLA 136
           K       +       +   A              ++
Sbjct: 332 KKAAPAVKRMK-----LAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 51.0 bits (123), Expect = 4e-07
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
              D++    +H+A     T  V  L++ GV     NR G TAL      A   G +   
Sbjct: 14  IKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTAL----HLACKFGCVDTA 69

Query: 183 PALEEAGA 190
             L   G 
Sbjct: 70  KYLASVGE 77

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 50.6 bits (122), Expect = 4e-07
 Identities = 7/74 (9%), Positives = 17/74 (22%), Gaps = 12/74 (16%)

Query: 1   MHVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLS 52
           +  A      ++++ L E         +    G         K    + R  L     + 
Sbjct: 294 VPAAADPSKQEVLQLLQEKLDEVV---RSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVR 350

Query: 53  SLPDNEGRTPLHWA 66
           +            +
Sbjct: 351 TR-SRSRARSSAVS 363

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  118 bits (298), Expect = 4e-31
 Identities = 44/188 (23%), Positives = 72/188 (38%), Gaps = 12/188 (6%)

Query: 5   DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLH 64
            ++ + +        + D  G T LHL+      +  + LL+   D +   DN GRTPLH
Sbjct: 5   AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI-QDNMGRTPLH 63

Query: 65  WAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA-- 122
            A       +   ++       + R   G T L L  +      ++ L     I   A  
Sbjct: 64  AAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL-----INSHADV 118

Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
           N  D+ G + LH A A       + LLK G + +  N +  T L +    A+  G+ +  
Sbjct: 119 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL----AAREGSYETA 174

Query: 183 PALEEAGA 190
             L +  A
Sbjct: 175 KVLLDHFA 182

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  117 bits (296), Expect = 7e-31
 Identities = 39/176 (22%), Positives = 61/176 (34%), Gaps = 18/176 (10%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLK---LDPDLSSLPDNEGRTPLHWAAIKGRINIID 76
            +D  G TPLH + S     + + L++    D D      ++G TPL  AA      ++ 
Sbjct: 53  IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR---MHDGTTPLILAARLAVEGML- 108

Query: 77  EILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILH 134
           E L  +          G++ LH     N  +A   L     +   A  +M +N   T L 
Sbjct: 109 EDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL-----LKNGANKDMQNNREETPLF 163

Query: 135 LATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
           LA           LL    + +  +       D+    A       IV  L+E   
Sbjct: 164 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDI----AQERMHHDIVRLLDEYNL 215

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 98.6 bits (247), Expect = 6e-24
 Identities = 36/157 (22%), Positives = 60/157 (38%), Gaps = 11/157 (7%)

Query: 36  GHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGET 95
               +  + +     L +  D  G T LH AA   R +   + L      A ++   G T
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAA-KRLLEASADANIQDNMGRT 60

Query: 96  VLHLTVKNNQYEAVKYLME--TLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGV 153
            LH  V  +     + L+     ++    +   +DG T L LA    +  M+  L+    
Sbjct: 61  PLHAAVSADAQGVFQILIRNRATDL----DARMHDGTTPLILAARLAVEGMLEDLINSHA 116

Query: 154 DVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
           DVNA++  G +AL      A+    +     L + GA
Sbjct: 117 DVNAVDDLGKSAL----HWAAAVNNVDAAVVLLKNGA 149

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 58.2 bits (142), Expect = 5e-10
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 13/86 (15%)

Query: 2   HVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS 53
           H A      D    LL+  A ++    ++    TPL L+  +G  E  + LL    +   
Sbjct: 130 HWAAAVNNVDAAVVLLKNGANKD---MQNNREETPLFLAAREGSYETAKVLLDHFANRDI 186

Query: 54  LPDNEGRTPLHWAAIKGRINIIDEIL 79
             D+  R P   A  +   +I+  +L
Sbjct: 187 -TDHMDRLPRDIAQERMHHDIV-RLL 210

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  118 bits (298), Expect = 5e-31
 Identities = 46/179 (25%), Positives = 70/179 (39%), Gaps = 18/179 (10%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 79
            ++    TPLHL+      EI   LL    D   L D  G TPLH A  +G +  +  + 
Sbjct: 40  FQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-LRDFRGNTPLHLACEQGCLASVGVLT 98

Query: 80  S-----LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDN-DGNT 131
                       +    +G T LHL   +     V+ L     ++  A  N  +  +G T
Sbjct: 99  QSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELL-----VSLGADVNAQEPCNGRT 153

Query: 132 ILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
            LHLA   +   +V  LLK G DVN +  +GY+   +         + +I   L +   
Sbjct: 154 ALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL----TWGRPSTRIQQQLGQLTL 208

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  114 bits (289), Expect = 7e-30
 Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 22/183 (12%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS------LPDNEGRTPLHWAAIKGRIN 73
           +   +G + LHL+       +T E+++    +          +N  +TPLH A I  +  
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQ---VKGDLAFLNFQNNLQQTPLHLAVITNQPE 59

Query: 74  IIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLME---TLNITKLANMPDND 128
           I + +L         E+R   G T LHL  +     +V  L +   T ++  +    + +
Sbjct: 60  IAEALLG---AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYN 116

Query: 129 GNTILHLATAGKLTTMVIYLLKLGVDVNAINRK-GYTALDVVESDASNSGALQIVPALEE 187
           G+T LHLA+      +V  L+ LG DVNA     G TAL +    A +     +V  L +
Sbjct: 117 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL----AVDLQNPDLVSLLLK 172

Query: 188 AGA 190
            GA
Sbjct: 173 CGA 175

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  109 bits (275), Expect = 7e-28
 Identities = 42/182 (23%), Positives = 72/182 (39%), Gaps = 25/182 (13%)

Query: 2   HVA------DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLP 55
           H+A      +I + LL A  +    +D  G+TPLHL+C +G L     L +         
Sbjct: 50  HLAVITNQPEIAEALLGAGCDPE-LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS 108

Query: 56  -----DNEGRTPLHWAAIKGRINIIDEILS----LNLQSAEMRTIHGETVLHLTVKNNQY 106
                +  G T LH A+I G + I++ ++S    +N Q       +G T LHL V     
Sbjct: 109 ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE----PCNGRTALHLAVDLQNP 164

Query: 107 EAVKYLMET-LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTA 165
           + V  L++   ++    N     G +   L      T +   L +L ++   +  +    
Sbjct: 165 DLVSLLLKCGADV----NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDE 220

Query: 166 LD 167
             
Sbjct: 221 ES 222

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 52.2 bits (126), Expect = 7e-08
 Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 9/83 (10%)

Query: 2   HVA------DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLP 55
           H+A      D+V  LL+   +   +    G++P  L+  +    I ++L +L  +     
Sbjct: 156 HLAVDLQNPDLVSLLLKCGADVN-RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ-M 213

Query: 56  DNEGRTPLHWAAIKGRINII-DE 77
             E      +           DE
Sbjct: 214 LPESEDEESYDTESEFTEFTEDE 236

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  118 bits (298), Expect = 5e-31
 Identities = 45/194 (23%), Positives = 74/194 (38%), Gaps = 23/194 (11%)

Query: 5   DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTP 62
           +  +EL+E         + D    T LH +     +++ +  +     +  L  +   TP
Sbjct: 23  ERCRELVEAGYDVR---QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP 79

Query: 63  LHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITK 120
           LHWA  +G ++++ +++      A   +    G + +HL  +      V YL     I K
Sbjct: 80  LHWATRQGHLSMVVQLMK---YGADPSLIDGEGCSCIHLAAQFGHTSIVAYL-----IAK 131

Query: 121 LA--NMPDNDGNTILHLATA-GKLTTMVIYLLKLGVDVNAI-NRKGYTALDVVESDASNS 176
               +M D +G T L  A            LL   V VN        TAL      A  +
Sbjct: 132 GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHW----AVLA 187

Query: 177 GALQIVPALEEAGA 190
           G   ++  L EAGA
Sbjct: 188 GNTTVISLLLEAGA 201

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  118 bits (298), Expect = 5e-31
 Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 17/176 (9%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 79
             D      +  +   G  E  REL++   D+   PD E  T LHWAAI  RI+++   +
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQ-PDKENVTLLHWAAINNRIDLVKYYI 62

Query: 80  S----LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET-LNITKLANMPDNDGNTILH 134
           S    ++    +       T LH   +      V  LM+   +     ++ D +G + +H
Sbjct: 63  SKGAIVDQLGGD----LNSTPLHWATRQGHLSMVVQLMKYGADP----SLIDGEGCSCIH 114

Query: 135 LATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
           LA     T++V YL+  G DV+ +++ G T L      A  + ++     L     
Sbjct: 115 LAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWA---AYRTHSVDPTRLLLTFNV 167

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  115 bits (291), Expect = 5e-30
 Identities = 54/201 (26%), Positives = 88/201 (43%), Gaps = 25/201 (12%)

Query: 2   HVA------DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLP 55
           H A      D+VK  +               TPLH +  +GHL +  +L+K   D S   
Sbjct: 47  HWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSL-I 105

Query: 56  DNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHL-TVKNNQYEAVKYL 112
           D EG + +H AA  G  +I+  +++   +    +M   +G T L     + +  +  + L
Sbjct: 106 DGEGCSCIHLAAQFGHTSIVAYLIA---KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLL 162

Query: 113 METLNITKLA--NMPDN-DGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVV 169
                +T     N+ D    NT LH A     TT++  LL+ G +V+A N KG +ALD+ 
Sbjct: 163 -----LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDL- 216

Query: 170 ESDASNSGALQIVPALEEAGA 190
              A     + ++  L+EA  
Sbjct: 217 ---AKQRKNVWMINHLQEARQ 234

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 99.4 bits (249), Expect = 3e-24
 Identities = 38/159 (23%), Positives = 62/159 (38%), Gaps = 12/159 (7%)

Query: 5   DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTP 62
            +V +L++  A        D  G + +HL+   GH  I   L+    D+    D  G TP
Sbjct: 90  SMVVQLMKYGADPS---LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM-MDQNGMTP 145

Query: 63  LHWAAIKG-RINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET-LNITK 120
           L WAA +   ++    +L+ N+        H  T LH  V       +  L+E   N+  
Sbjct: 146 LMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV-- 203

Query: 121 LANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAIN 159
             +  +  G + L LA   K   M+ +L +        N
Sbjct: 204 --DAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 51.3 bits (124), Expect = 1e-07
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
              D+     +  AT   +      L++ G DV   +++  T L      A+ +  + +V
Sbjct: 3   THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHW----AAINNRIDLV 58

Query: 183 PALEEAGA 190
                 GA
Sbjct: 59  KYYISKGA 66

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  116 bits (293), Expect = 3e-30
 Identities = 42/181 (23%), Positives = 66/181 (36%), Gaps = 24/181 (13%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELL----KLDPDLSSLPDNEGRTPLHWAAIKGRINII 75
             D +G T  HL+C        R LL        DL +  + +G T LH A        +
Sbjct: 74  ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEA-RNYDGLTALHVAVNTECQETV 132

Query: 76  DEILS----LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDG 129
             +L     ++    +     G + L   V+NN    V+ L     +   A  N     G
Sbjct: 133 QLLLERGADIDAVDIK----SGRSPLIHAVENNSLSMVQLL-----LQHGANVNAQMYSG 183

Query: 130 NTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAG 189
           ++ LH A+   L  +V  L++ G D +  N    T L V    A +   + I+       
Sbjct: 184 SSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV----ARSRRVIDILRGKATRP 239

Query: 190 A 190
           A
Sbjct: 240 A 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  114 bits (289), Expect = 9e-30
 Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 24/183 (13%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDP----DLSSLPDNEGRTPLHWAAIKGRINII 75
           + D +G TPLH++  +G+L     L+ L      +L    +N  +TPLH A I    +++
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY-NNLRQTPLHLAVITTLPSVV 62

Query: 76  DEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLME-----TLNITKLANMPDND 128
             +++     A       HG+T  HL  ++     ++ L++     TL++       + D
Sbjct: 63  RLLVT---AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL----EARNYD 115

Query: 129 GNTILHLATAGKLTTMVIYLLKLGVDVNAINRK-GYTALDVVESDASNSGALQIVPALEE 187
           G T LH+A   +    V  LL+ G D++A++ K G + L      A  + +L +V  L +
Sbjct: 116 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIH----AVENNSLSMVQLLLQ 171

Query: 188 AGA 190
            GA
Sbjct: 172 HGA 174

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 98.3 bits (246), Expect = 9e-24
 Identities = 27/163 (16%), Positives = 65/163 (39%), Gaps = 19/163 (11%)

Query: 2   HVA------DIVKELLEARQEFAW---KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLS 52
           H+A        ++ LL++          ++ +G T LH++ +    E  + LL+   D+ 
Sbjct: 84  HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID 143

Query: 53  SLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVK 110
           ++    GR+PL  A     ++++  +L      A    +   G + LH          V+
Sbjct: 144 AVDIKSGRSPLIHAVENNSLSMVQLLLQ---HGANVNAQMYSGSSALHSASGRGLLPLVR 200

Query: 111 YLMET-LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG 152
            L+ +  +     ++ +   +T L +A + ++  ++       
Sbjct: 201 TLVRSGADS----SLKNCHNDTPLMVARSRRVIDILRGKATRP 239

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 49.8 bits (120), Expect = 5e-07
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 8/74 (10%)

Query: 121 LANMPDNDGNTILHLATAGKLTTMVIYLLKL----GVDVNAINRKGYTALDVVESDASNS 176
           +A   D DG+T LH+A        V  L+ L    G +++  N    T L +    A  +
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHL----AVIT 56

Query: 177 GALQIVPALEEAGA 190
               +V  L  AGA
Sbjct: 57  TLPSVVRLLVTAGA 70

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  116 bits (293), Expect = 8e-30
 Identities = 45/214 (21%), Positives = 76/214 (35%), Gaps = 38/214 (17%)

Query: 2   HVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK------- 46
            +A       ++K  L   A      + D  G T    +   G ++  + L K       
Sbjct: 77  LLAAIAGSVKLLKLFLSKGADVN---ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL 133

Query: 47  --LDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVK 102
                +        G T L  AA KG + ++ +IL L+   A        G   L   + 
Sbjct: 134 RRKTKEDQERLRKGGATALMDAAEKGHVEVL-KIL-LDEMGADVNACDNMGRNALIHALL 191

Query: 103 NNQYEAVKYLMETL-----NITKLANMPDNDGNTILHLATAGKLTTMVIYLL-KLGVDVN 156
           ++    V+ +   L     ++    N+    G T L LA   K   +V  LL +  +++N
Sbjct: 192 SSDDSDVEAITHLLLDHGADV----NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN 247

Query: 157 AINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
             +  G TAL +    A      +I   L + GA
Sbjct: 248 DTDSDGKTALLL----AVELKLKKIAELLCKRGA 277

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  116 bits (293), Expect = 8e-30
 Identities = 47/204 (23%), Positives = 74/204 (36%), Gaps = 30/204 (14%)

Query: 5   DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTP 62
           DIV+ LL   A       +  NG TP  L+   G +++ +  L    D++   D  G T 
Sbjct: 53  DIVELLLRHGADPV---LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE-CDFYGFTA 108

Query: 63  LHWAAIKGRINIIDEILS---------LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLM 113
              AA+ G++  +  +              +  E     G T L    +    E +K L+
Sbjct: 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 168

Query: 114 ETL--NITKLANMPDNDGNTILHLATA----GKLTTMVIYLLKLGVDVNAINRKGYTALD 167
           + +  ++    N  DN G   L  A        +  +   LL  G DVN    +G T L 
Sbjct: 169 DEMGADV----NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL- 223

Query: 168 VVESDASNSGALQIVPAL-EEAGA 190
                A     L +V  L E+   
Sbjct: 224 ---ILAVEKKHLGLVQRLLEQEHI 244

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  113 bits (286), Expect = 7e-29
 Identities = 48/196 (24%), Positives = 78/196 (39%), Gaps = 14/196 (7%)

Query: 5   DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLH 64
           D+V++LLE      ++++  G TPLH +      +I   LL+   D        G TP  
Sbjct: 19  DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL-RKKNGATPFL 77

Query: 65  WAAIKGRINIIDEILSLNLQSAEM--RTIHGETVLHLTVKNNQYEAVKYLM-------ET 115
            AAI G + ++   LS   + A++     +G T         + +A+K+L          
Sbjct: 78  LAAIAGSVKLLKLFLS---KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR 134

Query: 116 LNITKLANMPDNDGNTILHLATAGKLTTMVIYLL-KLGVDVNAINRKGYTALDVVESDAS 174
               +        G T L  A       ++  LL ++G DVNA +  G  AL      + 
Sbjct: 135 RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD 194

Query: 175 NSGALQIVPALEEAGA 190
           +S    I   L + GA
Sbjct: 195 DSDVEAITHLLLDHGA 210

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  106 bits (267), Expect = 3e-26
 Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 18/169 (10%)

Query: 5   DIVKELLEA---------RQEFAWKKDLNGHTPLHLSCSKGHLEITRELL-KLDPDLSSL 54
             +K L +           +E   +    G T L  +  KGH+E+ + LL ++  D+++ 
Sbjct: 119 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA- 177

Query: 55  PDNEGRTPLHWAAIKGRINIIDEILSLNLQSA----EMRTIHGETVLHLTVKNNQYEAVK 110
            DN GR  L  A +    + ++ I  L L        +R   G+T L L V+      V+
Sbjct: 178 CDNMGRNALIHALLSSDDSDVEAITHL-LLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 236

Query: 111 YLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAIN 159
            L+E  +I    N  D+DG T L LA   KL  +   L K G   +  +
Sbjct: 237 RLLEQEHIEI--NDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  101 bits (254), Expect = 2e-24
 Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 27/182 (14%)

Query: 24  NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL 83
             +  L  +     +++ ++LL+   +++   +  G TPLH A    R +I++ +L    
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR--- 60

Query: 84  QSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAG 139
             A   +R  +G T   L       + +K       ++K A  N  D  G T    A   
Sbjct: 61  HGADPVLRKKNGATPFLLAAIAGSVKLLKLF-----LSKGADVNECDFYGFTAFMEAAVY 115

Query: 140 KLTTMVIYLLKLGVDVNA----------INRKGYTALDVVESDASNSGALQIVPAL-EEA 188
                + +L K G +VN           + + G TAL     DA+  G ++++  L +E 
Sbjct: 116 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL----MDAAEKGHVEVLKILLDEM 171

Query: 189 GA 190
           GA
Sbjct: 172 GA 173

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 87.5 bits (218), Expect = 1e-19
 Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 19/141 (13%)

Query: 56  DNEGRTPLHWAAIKGRINIIDEILS----LNLQSAEMRTIHGETVLHLTVKNNQYEAVKY 111
             E    L  A     ++++ ++L     +N Q  E     G T LH  V+ ++ + V+ 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEE----GGWTPLHNAVQMSREDIVEL 57

Query: 112 LMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVV 169
           L     +   A   +   +G T   LA       ++   L  G DVN  +  G+TA    
Sbjct: 58  L-----LRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAF--- 109

Query: 170 ESDASNSGALQIVPALEEAGA 190
             +A+  G ++ +  L + GA
Sbjct: 110 -MEAAVYGKVKALKFLYKRGA 129

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  113 bits (285), Expect = 1e-29
 Identities = 43/185 (23%), Positives = 76/185 (41%), Gaps = 27/185 (14%)

Query: 2   HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRT 61
              D ++            +D    TPL ++C  G      +L++    L    D EG T
Sbjct: 22  QNLDFLRN----------YRDSYNRTPLMVACMLGMENAIDKLVENFDKLED-KDIEGST 70

Query: 62  PLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNIT 119
            L WA    R+ I +++LS   + +    +   G+T L  ++     E   +L     + 
Sbjct: 71  ALIWAVKNNRLGIAEKLLS---KGSNVNTKDFSGKTPLMWSIIFGYSEMSYFL-----LE 122

Query: 120 KLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSG 177
             A  N  + +G T L +A+    + +V  LL+LG D++A +  G TA       A   G
Sbjct: 123 HGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEAS----ARIFG 178

Query: 178 ALQIV 182
             +++
Sbjct: 179 RQEVI 183

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 99.8 bits (250), Expect = 8e-25
 Identities = 50/173 (28%), Positives = 72/173 (41%), Gaps = 21/173 (12%)

Query: 21  KDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILS 80
            D NG     +   K   +   + L+      +  D+  RTPL  A + G  N ID+++ 
Sbjct: 4   MDKNGEIVEKIKDEKSINQNL-DFLR------NYRDSYNRTPLMVACMLGMENAIDKLVE 56

Query: 81  LNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMET-LNITKLANMPDNDGNTILHLAT 137
                   E + I G T L   VKNN+    + L+    N+    N  D  G T L  + 
Sbjct: 57  ---NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV----NTKDFSGKTPLMWSI 109

Query: 138 AGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
               + M  +LL+ G +VN  N +G T L      AS  G  +IV  L E GA
Sbjct: 110 IFGYSEMSYFLLEHGANVNDRNLEGETPL----IVASKYGRSEIVKKLLELGA 158

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 88.2 bits (220), Expect = 1e-20
 Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 13/134 (9%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 79
            KD+ G T L  +     L I  +LL    ++++  D  G+TPL W+ I G   +   +L
Sbjct: 63  DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT-KDFSGKTPLMWSIIFGYSEMSYFLL 121

Query: 80  SLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM--PDNDGNTILHL 135
                 A    R + GET L +  K  + E VK L     +   A++   D  G T    
Sbjct: 122 E---HGANVNDRNLEGETPLIVASKYGRSEIVKKL-----LELGADISARDLTGLTAEAS 173

Query: 136 ATAGKLTTMVIYLL 149
           A       ++    
Sbjct: 174 ARIFGRQEVIKIFT 187

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  115 bits (291), Expect = 6e-29
 Identities = 34/185 (18%), Positives = 62/185 (33%), Gaps = 22/185 (11%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSL--PDNEGRTPLHWAAIKGRINIID- 76
             + +  + LH + +     +   +L        +   D  G T L   A     + +  
Sbjct: 194 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVAS 253

Query: 77  ---------EILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL--NITKLANMP 125
                    ++        +     G T LH   + +    VKYL+     N     +  
Sbjct: 254 AKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK----DKQ 309

Query: 126 DNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPAL 185
           D DG T + LA       +V+YL++ G  V A++   +TA  +    A  +    IV   
Sbjct: 310 DEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQL----AQANNHHNIVDIF 365

Query: 186 EEAGA 190
           +    
Sbjct: 366 DRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  112 bits (282), Expect = 1e-27
 Identities = 42/204 (20%), Positives = 78/204 (38%), Gaps = 23/204 (11%)

Query: 5   DIVKELLEARQEFAW-------KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDN 57
           +  ++L+    +            D + +TPL L+       +   L+K   D +   + 
Sbjct: 139 EKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI-YNK 197

Query: 58  EGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAV---KYL 112
             R+ LH AA      ++  +L+        E    +G T L +   N   + V   K L
Sbjct: 198 SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLL 257

Query: 113 ME---TLNITKLANMP--DNDGNTILHLATAGKLTTMVIYLL-KLGVDVNAINRKGYTAL 166
           +E    ++    A        G T LH A       +V YL+ + G + +  +  G T +
Sbjct: 258 VEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI 317

Query: 167 DVVESDASNSGALQIVPALEEAGA 190
            +    A+  G +++V  L + GA
Sbjct: 318 ML----AAQEGRIEVVMYLIQQGA 337

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  110 bits (276), Expect = 6e-27
 Identities = 40/186 (21%), Positives = 67/186 (36%), Gaps = 27/186 (14%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 79
           + +      LH   + G   IT  + +   ++        RT LHW A         E L
Sbjct: 89  EPEPESPIKLHTE-AAGSYAITEPITRESVNIID--PRHNRTVLHWIASNSSAEKS-EDL 144

Query: 80  SLNLQSA--------EMRTIHGETVLHLTVKNNQYEAVKYLMET-LNITKLANMPDNDGN 130
            ++                    T L L V   +   V YLM+   +      + +    
Sbjct: 145 IVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP----TIYNKSER 200

Query: 131 TILHLATAGKLTTMVIYLL---KLGVDVNAINRKGYTALDVVESDASNSGALQIVPALE- 186
           + LH A A +   M++Y+L   KL  D+  ++R G TAL       +++     V + + 
Sbjct: 201 SALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTAL----MIVAHNEGRDQVASAKL 256

Query: 187 --EAGA 190
             E GA
Sbjct: 257 LVEKGA 262

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  105 bits (263), Expect = 4e-25
 Identities = 38/169 (22%), Positives = 59/169 (34%), Gaps = 15/169 (8%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 79
           +       P       G+  +           +  P+ E    LH  A  G   I + I 
Sbjct: 56  ELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTE-PEPESPIKLHTEA-AGSYAITEPIT 113

Query: 80  SLNLQSAE-MRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA-----NMPDNDGNTIL 133
               +S   +   H  TVLH    N+  E  + L+       +A     N  D D NT L
Sbjct: 114 R---ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPL 170

Query: 134 HLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
            LA   +   +V YL+K G D    N+   +AL      A+ +    ++
Sbjct: 171 MLAVLARRRRLVAYLMKAGADPTIYNKSERSAL----HQAAANRDFGMM 215

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 97.7 bits (244), Expect = 1e-22
 Identities = 33/174 (18%), Positives = 61/174 (35%), Gaps = 25/174 (14%)

Query: 2   HVA------DIVKELLEARQEFAW--KKDLNGHTPLHLSCSKGHLEI--TRELL------ 45
           H A       ++  +L + +      + D NG T L +       +   + +LL      
Sbjct: 204 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAK 263

Query: 46  --KLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKN 103
                         +GRT LH+AA    + I+  ++     + + +   G+T + L  + 
Sbjct: 264 VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE 323

Query: 104 NQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDV 155
            + E V YL     I + A     D   +T   LA A     +V    +   + 
Sbjct: 324 GRIEVVMYL-----IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 93.5 bits (233), Expect = 3e-21
 Identities = 30/180 (16%), Positives = 53/180 (29%), Gaps = 30/180 (16%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 79
           +   +    L  +   G+++  R  L           +    P       G   +  +  
Sbjct: 32  QSITSSQHSLLEASYDGYIKRQRNEL----------QHYSLYPNPQGYGNGNDFLG-DFN 80

Query: 80  SLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET-LNITKLANMPDNDGNTILHLATA 138
             NLQ            LH     + Y   + +    +NI            T+LH   +
Sbjct: 81  HTNLQIPTEPEPESPIKLHTEAAGS-YAITEPITRESVNIID-----PRHNRTVLHWIAS 134

Query: 139 GK--------LTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
                     +       +  G DVNA++    T L      A  +   ++V  L +AGA
Sbjct: 135 NSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPL----MLAVLARRRRLVAYLMKAGA 190

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  114 bits (289), Expect = 1e-28
 Identities = 39/177 (22%), Positives = 59/177 (33%), Gaps = 22/177 (12%)

Query: 21  KDLNGHTPLHLSCSKGHLEITRELL---KLDPDLSSLPDNEGRTPLHWAAIKGRINIIDE 77
                   L  +   G+ E    LL    ++   S   D    TPLH AA   R+ I+  
Sbjct: 20  TGEYKKDELLEAARSGNEEKLMALLTPLNVNCHAS---DGRKSTPLHLAAGYNRVRIVQL 76

Query: 78  ILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTIL 133
           +L      A    +   G   LH       YE  + L     +   A  N  D    T L
Sbjct: 77  LLQ---HGADVHAKDKGGLVPLHNACSYGHYEVTELL-----LKHGACVNAMDLWQFTPL 128

Query: 134 HLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
           H A +     +   LL  G D   +N  G +A+D+    A      + +    +  +
Sbjct: 129 HEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDM----APTPELRERLTYEFKGHS 181

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  109 bits (276), Expect = 6e-27
 Identities = 48/175 (27%), Positives = 70/175 (40%), Gaps = 32/175 (18%)

Query: 2   HVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS 53
           H+A       IV+ LL+  A       KD  G  PLH +CS GH E+T  LLK    +++
Sbjct: 63  HLAAGYNRVRIVQLLLQHGADVH---AKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA 119

Query: 54  LPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKY 111
             D    TPLH AA K R+ +   +LS     A   +   HG++ + +       E + Y
Sbjct: 120 -MDLWQFTPLHEAASKNRVEVCSLLLS---HGADPTLVNCHGKSAVDMAPTPELRERLTY 175

Query: 112 LMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTAL 166
                            G+++L  A    L   V   L L +      +   TAL
Sbjct: 176 E--------------FKGHSLLQAAREADL-AKVKKTLALEIINFKQPQSHETAL 215

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  106 bits (267), Expect = 1e-25
 Identities = 31/152 (20%), Positives = 54/152 (35%), Gaps = 9/152 (5%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIID--E 77
             +  GH+ L  +  +  L   ++ L L+            T LH A            E
Sbjct: 174 TYEFKGHSLLQAAR-EADLAKVKKTLALEIINFK-QPQSHETALHCAVASLHPKRKQVAE 231

Query: 78  ILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET-LNITKLANMPDNDGNTILHLA 136
           +L     +   +     T LH+  +    + ++ L +    +    N  D+ G T LH A
Sbjct: 232 LLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM----NALDSLGQTALHRA 287

Query: 137 TAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 168
                      LL  G D + I+ +G+TA  +
Sbjct: 288 ALAGHLQTCRLLLSYGSDPSIISLQGFTAAQM 319

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 98.0 bits (245), Expect = 9e-23
 Identities = 27/165 (16%), Positives = 59/165 (35%), Gaps = 22/165 (13%)

Query: 5   DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGH---LEITRELLKLDPDLSSLPDNEGRT 61
             VK+ L        K+  +  T LH + +  H    ++   LL+   +++   + +  T
Sbjct: 192 AKVKKTLALEIINF-KQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNE-KNKDFMT 249

Query: 62  PLHWAAIKGRINIIDEILSLNLQSAEM--RTIHGETVLHLTVKNNQYEAVKYLMETLNIT 119
           PLH AA +   ++++ +       A+M      G+T LH        +  + L     ++
Sbjct: 250 PLHVAAERAHNDVMEVLHK---HGAKMNALDSLGQTALHRAALAGHLQTCRLL-----LS 301

Query: 120 KLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKG 162
             +  ++    G T   +         V  +L     +   +   
Sbjct: 302 YGSDPSIISLQGFTAAQMGNE-----AVQQILSESTPMRTSDVDY 341

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 91.4 bits (228), Expect = 1e-20
 Identities = 35/169 (20%), Positives = 58/169 (34%), Gaps = 25/169 (14%)

Query: 24  NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL 83
            G + L L+       +T                  +  L  AA  G    +  +L+   
Sbjct: 3   FGKSALDLADPSAKAVLT--------------GEYKKDELLEAARSGNEEKLMALLTPLN 48

Query: 84  QSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAGKL 141
            +         T LHL    N+   V+ L     +   A  +  D  G   LH A +   
Sbjct: 49  VNCHASDGRKSTPLHLAAGYNRVRIVQLL-----LQHGADVHAKDKGGLVPLHNACSYGH 103

Query: 142 TTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
             +   LLK G  VNA++   +T L     +A++   +++   L   GA
Sbjct: 104 YEVTELLLKHGACVNAMDLWQFTPL----HEAASKNRVEVCSLLLSHGA 148

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 55.6 bits (135), Expect = 1e-08
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 12/74 (16%)

Query: 2   HVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS 53
           HVA      D+++ L +  A+       D  G T LH +   GHL+  R LL    D S 
Sbjct: 252 HVAAERAHNDVMEVLHKHGAKMN---ALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSI 308

Query: 54  LPDNEGRTPLHWAA 67
           +   +G T      
Sbjct: 309 I-SLQGFTAAQMGN 321

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 25/85 (29%)

Query: 127 NDGNTILHL---------------------ATAGKLTTMVIYLLKLGVDVNAINRKGYTA 165
             G + L L                     A +G    ++  L  L V+ +A + +  T 
Sbjct: 2   EFGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTP 61

Query: 166 LDVVESDASNSGALQIVPALEEAGA 190
           L +    A+    ++IV  L + GA
Sbjct: 62  LHL----AAGYNRVRIVQLLLQHGA 82

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  110 bits (277), Expect = 2e-28
 Identities = 37/170 (21%), Positives = 71/170 (41%), Gaps = 16/170 (9%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 79
           + D  G+TPL+++     +EI + L+    D++   ++   +P  +A  +GR  I+  +L
Sbjct: 34  EVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL-QNSISDSPYLYAGAQGRTEILAYML 92

Query: 80  SLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME--TLNITKLANMPDNDGNTILHLAT 137
                       +G   L    +    + VK L+E    +I    +  ++ G T L  A 
Sbjct: 93  KHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDI----DFQNDFGYTALIEAV 148

Query: 138 AGKLTT-----MVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
             +        +V  L++ G D +  +  G TA+D     A+  G  +I 
Sbjct: 149 GLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDY----ANQKGYTEIS 194

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  107 bits (270), Expect = 2e-27
 Identities = 38/176 (21%), Positives = 63/176 (35%), Gaps = 14/176 (7%)

Query: 21  KDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILS 80
           K       L  +  +   ++   L      +  + D EG TPL+ A     I I   ++ 
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEV-DTEGNTPLNIAVHNNDIEIAKALID 60

Query: 81  LNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMET--LNITKLANMPDNDGNTILHLA 136
              + A   ++    ++         + E + Y+++    ++    N  +  G   L  A
Sbjct: 61  ---RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDL----NKHNRYGGNALIPA 113

Query: 137 TAGKLTTMVIYLLKLG-VDVNAINRKGYTALDV-VESDASNSGALQIVPALEEAGA 190
                   V  LL+ G  D++  N  GYTAL   V     N     IV  L E GA
Sbjct: 114 AEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA 169

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 84.0 bits (209), Expect = 5e-19
 Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 16/140 (11%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLK---LDPDLSSLPDNEGRTPLHWAAIKGRINIID 76
            ++    +P   + ++G  EI   +LK    D +     +  G   L  AA KG I+ + 
Sbjct: 67  LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKH---NRYGGNALIPAAEKGHIDNVK 123

Query: 77  EILSLNLQSAEMRTIHGETVLHL-----TVKNNQYEAVKYLMET-LNITKLANMPDNDGN 130
            +L    +  + +   G T L              + VK LME   +     ++ DN G 
Sbjct: 124 LLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQ----SIKDNSGR 179

Query: 131 TILHLATAGKLTTMVIYLLK 150
           T +  A     T +   L +
Sbjct: 180 TAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 69.0 bits (170), Expect = 8e-14
 Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 16/120 (13%)

Query: 5   DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKL---DPDLSSLPDNEGRT 61
           +I+  +L+       K +  G   L  +  KGH++  + LL+    D D     ++ G T
Sbjct: 86  EILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQ---NDFGYT 142

Query: 62  PLHWAAI-----KGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLME 114
            L  A       +   +I+  ++      A   ++   G T +    +    E  K L +
Sbjct: 143 ALIEAVGLREGNQLYQDIVKLLME---NGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 67.5 bits (166), Expect = 3e-13
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 9/104 (8%)

Query: 88  MRTIHGETVLHLTVKNNQYEAVKYLMET-LNITKLANMPDNDGNTILHLATAGKLTTMVI 146
           M+T     +L    + +  +  + L +T   +    +  D +GNT L++A       +  
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQV----DEVDTEGNTPLNIAVHNNDIEIAK 56

Query: 147 YLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
            L+  G D+N  N    +        A   G  +I+  + +   
Sbjct: 57  ALIDRGADINLQNSISDSPY----LYAGAQGRTEILAYMLKHAT 96

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  107 bits (271), Expect = 3e-28
 Identities = 41/165 (24%), Positives = 65/165 (39%), Gaps = 14/165 (8%)

Query: 24  NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL 83
           +    L  +   G  +  R L+      ++  D  G +PLH AA  G  +   E+L    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTT-EVLLRAG 57

Query: 84  QSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAGKL 141
            S + RT    T LH+         V+ L     +   A  N  D    T LH AT    
Sbjct: 58  VSRDARTKVDRTPLHMAASEGHANIVEVL-----LKHGADVNAKDMLKMTALHWATEHNH 112

Query: 142 TTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALE 186
             +V  L+K G DV+  ++   TA D+    + ++G   +   L+
Sbjct: 113 QEVVELLIKYGADVHTQSKFCKTAFDI----SIDNGNEDLAEILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 89.8 bits (224), Expect = 1e-21
 Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 11/135 (8%)

Query: 5   DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLH 64
           D V+ L+     F    D  G +PLHL+   GH   T  LL+      +      RTPLH
Sbjct: 16  DEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA-RTKVDRTPLH 72

Query: 65  WAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM 124
            AA +G  NI+ E+L  +      + +   T LH   ++N  E V+ L     I   A++
Sbjct: 73  MAASEGHANIV-EVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL-----IKYGADV 126

Query: 125 --PDNDGNTILHLAT 137
                   T   ++ 
Sbjct: 127 HTQSKFCKTAFDISI 141

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 75.9 bits (188), Expect = 1e-16
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 2/93 (2%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 79
            +     TPLH++ S+GH  I   LLK   D+++  D    T LHWA       ++ E+L
Sbjct: 62  ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA-KDMLKMTALHWATEHNHQEVV-ELL 119

Query: 80  SLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 112
                    ++   +T   +++ N   +  + L
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 66.6 bits (164), Expect = 2e-13
 Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 10/99 (10%)

Query: 93  GETVLHLTVKNNQYEAVKYLMET-LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKL 151
               L    +  Q + V+ LM      T      D  G + LHLA      +    LL+ 
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTT-----DWLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 152 GVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
           GV  +A  +   T L +    A++ G   IV  L + GA
Sbjct: 57  GVSRDARTKVDRTPLHM----AASEGHANIVEVLLKHGA 91

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  110 bits (278), Expect = 3e-28
 Identities = 34/174 (19%), Positives = 60/174 (34%), Gaps = 17/174 (9%)

Query: 22  DLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL 81
           ++ G   L         +   E +     +    +      L  ++++G  +++  I+  
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIY- 58

Query: 82  NLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM--PDNDGNTILHLAT 137
             +     +    G T LH  V     E VK+L     +    N+   D+DG T LH A 
Sbjct: 59  --EVDDPSLPNDEGITALHNAVCAGHTEIVKFL-----VQFGVNVNAADSDGWTPLHCAA 111

Query: 138 AGKLTTMVIYLLKLGVDVNAINRK-GYTALDVVESDASNSGALQIVPALEEAGA 190
           +     +  +L++ G  V A+      TA D  E      G  Q    L     
Sbjct: 112 SCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCE--EMEEGYTQCSQFLYGVQE 163

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  107 bits (270), Expect = 4e-27
 Identities = 31/167 (18%), Positives = 56/167 (33%), Gaps = 14/167 (8%)

Query: 5   DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTP 62
               E +    R +F    +      L  S  +G  ++ + ++    D S  P++EG T 
Sbjct: 19  KTGSERIAHGMRVKF----NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSL-PNDEGITA 73

Query: 63  LHWAAIKGRINIIDEILSLNLQSAEM--RTIHGETVLHLTVKNNQYEAVKYLMETL-NIT 119
           LH A   G   I+  ++        +      G T LH     N  +  K+L+E+   + 
Sbjct: 74  LHNAVCAGHTEIVKFLVQ---FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF 130

Query: 120 KLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTAL 166
                 D               T    +L  +   +  +N+    AL
Sbjct: 131 A-MTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYAL 176

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 92.3 bits (230), Expect = 1e-21
 Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 15/139 (10%)

Query: 55  PDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMR-TIHGETVLHLTVKNNQYEAVKYLM 113
           P+  G+  L             E ++       ++       +L  +    +++ V+ + 
Sbjct: 1   PEITGQVSLPPGKRTNLRKTGSERIA---HGMRVKFNPLPLALLLDSSLEGEFDLVQRI- 56

Query: 114 ETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVES 171
               I ++   ++P+++G T LH A     T +V +L++ GV+VNA +  G+T L     
Sbjct: 57  ----IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHC--- 109

Query: 172 DASNSGALQIVPALEEAGA 190
            A++   +Q+   L E+GA
Sbjct: 110 -AASCNNVQVCKFLVESGA 127

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 83.4 bits (207), Expect = 2e-18
 Identities = 26/165 (15%), Positives = 59/165 (35%), Gaps = 18/165 (10%)

Query: 5   DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTP 62
           D+V+ ++            +  G T LH +   GH EI + L++   ++++  D++G TP
Sbjct: 51  DLVQRIIYEVDDPS---LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA-ADSDGWTP 106

Query: 63  LHWAAIKGRINIIDEILSL--NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITK 120
           LH AA    + +   ++     + +     +         ++    +  ++L        
Sbjct: 107 LHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL-----YGV 161

Query: 121 LANM--PDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGY 163
              M   +      L          +    +K G  +  I+R+  
Sbjct: 162 QEKMGIMNKGVIYALWDYEPQNDDEL---PMKEGDCMTIIHREDE 203

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 25/155 (16%), Positives = 48/155 (30%), Gaps = 24/155 (15%)

Query: 2   HVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKL--DPDL 51
           H A      +IVK L++           D +G TPLH + S  ++++ + L++       
Sbjct: 75  HNAVCAGHTEIVKFLVQFGVNVN---AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131

Query: 52  SSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKY 111
            +  D +          +G      + L    +   +        L      N  E    
Sbjct: 132 MTYSDMQTAADKCEEMEEGYTQCS-QFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMK 190

Query: 112 LMETLNITK----------LANMPDNDGNTILHLA 136
             + + I             A + D +G    +L 
Sbjct: 191 EGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLL 225

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  111 bits (281), Expect = 4e-28
 Identities = 43/193 (22%), Positives = 78/193 (40%), Gaps = 30/193 (15%)

Query: 5   DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTP 62
           + V  LLE  A        +++G T LH +C   ++++ + L++   +++  PDNEG  P
Sbjct: 54  EEVLRLLERGADIN---YANVDGLTALHQACIDDNVDMVKFLVENGANINQ-PDNEGWIP 109

Query: 63  LHWAAIKGRINIIDEIL-----SLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 117
           LH AA  G ++I  E L      +   ++E     G+T L +  +    E ++  +    
Sbjct: 110 LHAAASCGYLDIA-EYLISQGAHVGAVNSE-----GDTPLDIAEEEAMEELLQNEV---- 159

Query: 118 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSG 177
                N    D            L     +L    ++     + G TAL V    A+  G
Sbjct: 160 -----NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHV----AAAKG 210

Query: 178 ALQIVPALEEAGA 190
             +++  L +A  
Sbjct: 211 YTEVLKLLIQARY 223

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  110 bits (277), Expect = 2e-27
 Identities = 48/199 (24%), Positives = 80/199 (40%), Gaps = 30/199 (15%)

Query: 2   HVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS 53
           H A      D+VK L+E  A      + D  G  PLH + S G+L+I   L+     + +
Sbjct: 78  HQACIDDNVDMVKFLVENGANIN---QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGA 134

Query: 54  LPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLM 113
           + ++EG TPL  A  +    ++ +   +N Q         E       +    +A ++L 
Sbjct: 135 V-NSEGDTPLDIAEEEAMEELL-QNE-VNRQGV-----DIEAARKEEERIMLRDARQWL- 185

Query: 114 ETLNITKLANM--PDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVES 171
                +   N       G T LH+A A   T ++  L++   DVN  +  G+T L     
Sbjct: 186 ----NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHA--- 238

Query: 172 DASNSGALQIVPALEEAGA 190
            A++ G  +    L E   
Sbjct: 239 -AAHWGKEEACRILVENLC 256

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 96.4 bits (241), Expect = 1e-22
 Identities = 37/203 (18%), Positives = 69/203 (33%), Gaps = 28/203 (13%)

Query: 2   HVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS 53
           H A      DI + L+   A        +  G TPL ++  +   E+ +  +       +
Sbjct: 111 HAAASCGYLDIAEYLISQGAHVG---AVNSEGDTPLDIAEEEAMEELLQNEV-------N 160

Query: 54  LPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLM 113
               +              +   + L+    +       G T LH+       E +K L+
Sbjct: 161 RQGVDIEAARKEEERIMLRDAR-QWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219

Query: 114 ET-LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESD 172
           +   ++    N+ D DG T LH A           L++   D+ A+N+ G TA DV    
Sbjct: 220 QARYDV----NIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDV---- 271

Query: 173 ASNSGALQIVPALEEAGARRCDQ 195
           A       +    ++      ++
Sbjct: 272 ADEDILGYLEELQKKQNLLHSEK 294

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 94.1 bits (235), Expect = 7e-22
 Identities = 25/170 (14%), Positives = 53/170 (31%), Gaps = 26/170 (15%)

Query: 2   HVA------DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLP 55
            +A      ++++  +        ++ ++              +  + L     +     
Sbjct: 144 DIAEEEAMEELLQNEVN-------RQGVDIEAARKEEERIMLRDARQWLNSGHINDVR-H 195

Query: 56  DNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLM 113
              G T LH AA KG   ++  ++          ++   G T LH      + EA + L 
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQ---ARYDVNIKDYDGWTPLHAAAHWGKEEACRIL- 251

Query: 114 ETLNITKLANM--PDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK 161
               +  L +M   +  G T   +A    L  +     K  +  +    K
Sbjct: 252 ----VENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREK 297

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 93.7 bits (234), Expect = 1e-21
 Identities = 34/166 (20%), Positives = 55/166 (33%), Gaps = 18/166 (10%)

Query: 21  KDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILS 80
            D        L    G        +            +       A   G    +  +L 
Sbjct: 4   ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKV--KFDDGAVFLAACSSGDTEEVLRLLE 61

Query: 81  LNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLA 136
              + A      + G T LH    ++  + VK+L     +   A  N PDN+G   LH A
Sbjct: 62  ---RGADINYANVDGLTALHQACIDDNVDMVKFL-----VENGANINQPDNEGWIPLHAA 113

Query: 137 TAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
            +     +  YL+  G  V A+N +G T LD+    A      +++
Sbjct: 114 ASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI----AEEEAMEELL 155

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 91.0 bits (227), Expect = 1e-20
 Identities = 32/184 (17%), Positives = 72/184 (39%), Gaps = 28/184 (15%)

Query: 2   HVA------DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKL--DPDLSS 53
            +         ++  +  R++   K   +       +CS G  E    LL+   D + + 
Sbjct: 13  QLKRWIGSETDLEPPVVKRKKT--KVKFDDGAVFLAACSSGDTEEVLRLLERGADINYA- 69

Query: 54  LPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKY 111
             + +G T LH A I   ++++  ++      A        G   LH        +  +Y
Sbjct: 70  --NVDGLTALHQACIDDNVDMVKFLVE---NGANINQPDNEGWIPLHAAASCGYLDIAEY 124

Query: 112 LMETLNITKLANM--PDNDGNTILHLATAGKLTTMVIYLL-KLGVDVNAINRKGYTAL-- 166
           L     I++ A++   +++G+T L +A    +  ++   + + GVD+ A  ++    +  
Sbjct: 125 L-----ISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLR 179

Query: 167 DVVE 170
           D  +
Sbjct: 180 DARQ 183

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 72.9 bits (180), Expect = 1e-14
 Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 11/136 (8%)

Query: 56  DNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET 115
           D + +         G    + E   +  +  +++   G  V      +   E V  L+E 
Sbjct: 5   DAKQKRNEQLKRWIGSETDL-EPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLER 62

Query: 116 -LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDAS 174
             +I    N  + DG T LH A       MV +L++ G ++N  + +G+  L      A+
Sbjct: 63  GADI----NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPL----HAAA 114

Query: 175 NSGALQIVPALEEAGA 190
           + G L I   L   GA
Sbjct: 115 SCGYLDIAEYLISQGA 130

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  110 bits (277), Expect = 1e-27
 Identities = 44/212 (20%), Positives = 71/212 (33%), Gaps = 32/212 (15%)

Query: 2   HVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS 53
           H+A        +  LL   A  E+   ++  G T LHL+   G      +L      +  
Sbjct: 14  HLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV 73

Query: 54  LPDNEGRTPLHWAAIKGRINIIDEILS----LNLQSAEMRTIHGE---------TVLHLT 100
             +  G T LH A           +L         +++      +              +
Sbjct: 74  A-ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDS 132

Query: 101 VKNNQYEAVKYLMET-LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAIN 159
             N + E      +  L +       + DG+T LH+A   K   MV  L   G D+N   
Sbjct: 133 QPNPENEEEPRDEDWRLQL----EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE 188

Query: 160 RK-GYTALDVVESDASNSGALQIVPALEEAGA 190
              G T L +    A  + A  ++  L +AGA
Sbjct: 189 PTCGRTPLHL----AVEAQAASVLELLLKAGA 216

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  110 bits (277), Expect = 1e-27
 Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 22/185 (11%)

Query: 21  KDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSL--PDNEGRTPLHWAAIKGRINIIDEI 78
              +G T LHL+    H      LL        L   ++ G+T LH AAI G  + ++++
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 79  LSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLME----------TLNITKLANMPD 126
            +     A   +    G T LHL  +   +     L++             +T+  +   
Sbjct: 65  YA---AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 127 NDGNTILHLATA-GKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPAL 185
           +  +    + +                + + A N  G+T L V    A      ++V  L
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHV----AVIHKDAEMVRLL 177

Query: 186 EEAGA 190
            +AGA
Sbjct: 178 RDAGA 182

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  105 bits (264), Expect = 6e-26
 Identities = 48/212 (22%), Positives = 66/212 (31%), Gaps = 35/212 (16%)

Query: 2   HVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS 53
           H+A        V++L    A        +  GHT LHL+C          LL+  P    
Sbjct: 50  HLAAILGEASTVEKLYAAGAGVL---VAERGGHTALHLACRVRAHTCACVLLQPRPSHPR 106

Query: 54  ------------LPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTV 101
                          +    P    +     N  +          E     G T LH+ V
Sbjct: 107 DASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAV 166

Query: 102 KNNQYEAVKYLMETLNITKLA--NMPDND-GNTILHLATAGKLTTMVIYLLKLGVDVNAI 158
            +   E V+ L         A  N P+   G T LHLA   +  +++  LLK G D  A 
Sbjct: 167 IHKDAEMVRLL-----RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR 221

Query: 159 NRKGYTALDVVESDASNSGALQIVPALEEAGA 190
              G T L      A       +   L   GA
Sbjct: 222 MYGGRTPLGS----ALLRPNPILARLLRAHGA 249

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  102 bits (256), Expect = 9e-25
 Identities = 32/213 (15%), Positives = 54/213 (25%), Gaps = 43/213 (20%)

Query: 2   HVA------DIVKELLEAR------------QEFAWKKDLNGHTPLHLSCSKGHLEITRE 43
           H+A           LL+ R             +         H P  +            
Sbjct: 83  HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEP 142

Query: 44  LL---KLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL-----SLNLQSAEMRTIHGET 95
                +L  +     + +G TPLH A I     ++  +L      LN          G T
Sbjct: 143 RDEDWRLQLEAE---NYDGHTPLHVAVIHKDAEMV-RLLRDAGADLNKPEPT----CGRT 194

Query: 96  VLHLTVKNNQYEAVKYLMET-LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVD 154
            LHL V+      ++ L++   +           G T L  A       +   L   G  
Sbjct: 195 PLHLAVEAQAASVLELLLKAGADP----TARMYGGRTPLGSALLRPNPILARLLRAHGAP 250

Query: 155 VNAINRKGYTALDVVESDASNSGALQIVPALEE 187
                    +        + +          +E
Sbjct: 251 EPEDGGDKLSPCSS----SGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 46.0 bits (110), Expect = 9e-06
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK---GYTALDVVESDASNSGAL 179
                DG+T LHLA   +    + +LL        ++ +   G TAL +    A+  G  
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHL----AAILGEA 58

Query: 180 QIVPALEEAGA 190
             V  L  AGA
Sbjct: 59  STVEKLYAAGA 69

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 8/55 (14%), Positives = 16/55 (29%), Gaps = 11/55 (20%)

Query: 2   HVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLD 48
             A       + + L    A +    +   +  +P   S S    +   E  + D
Sbjct: 230 GSALLRPNPILARLLRAHGAPEP---EDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  109 bits (274), Expect = 1e-27
 Identities = 39/232 (16%), Positives = 70/232 (30%), Gaps = 48/232 (20%)

Query: 3   VADIVKELLEARQEFAW---KKDLNGHTPLH---LSCSKGHLEITRELLKLDPDLSSLP- 55
           +  +++ L    +        +   G T L    L+   G       LL++D D  +   
Sbjct: 18  LTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP 77

Query: 56  ---------DNEGRTPLHWAAIKGRINIIDEILS------------LNLQSAEMRTIHGE 94
                      +G + LH A  K  +  +  ++                +        GE
Sbjct: 78  LVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGE 137

Query: 95  TVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTT----------- 143
             L L     Q++ V YL+E  +        D+ GNT+LH        +           
Sbjct: 138 LPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMY 197

Query: 144 -----MVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
                M   L          N +G T L +    A+  G ++I   + +   
Sbjct: 198 DGLLQMGARLCPTVQLEEISNHQGLTPLKL----AAKEGKIEIFRHILQREF 245

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 80.6 bits (199), Expect = 2e-17
 Identities = 43/211 (20%), Positives = 62/211 (29%), Gaps = 45/211 (21%)

Query: 25  GHTPLHLSCSKGHLEITRELL-------KLDPDLSSLPDNEGRTPLHWAAI---KGRINI 74
               L    S+G  E    LL       K   D +    + G+T L  A +    G    
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 75  IDEILS----------LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME---------- 114
           I  +L           L           G + LH+ ++    + VK L+E          
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121

Query: 115 TLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGV---DVNAINRKGYTAL--DVV 169
                K        G   L LA   K   +V YLL+       + A +  G T L   V+
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM 181

Query: 170 ESD----------ASNSGALQIVPALEEAGA 190
            +D              G LQ+   L     
Sbjct: 182 IADNSPENSALVIHMYDGLLQMGARLCPTVQ 212

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 69.0 bits (169), Expect = 2e-13
 Identities = 29/121 (23%), Positives = 41/121 (33%), Gaps = 33/121 (27%)

Query: 2   HVA------DIVKELLEARQEFA--WKKDLNGHTPLHL----------------SCSKGH 37
            +A      D+V  LLE   + A     D  G+T LH                     G 
Sbjct: 141 SLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGL 200

Query: 38  LEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVL 97
           L++   L         + +++G TPL  AA +G+I I   IL         R   G    
Sbjct: 201 LQMGARLCPTVQLEE-ISNHQGLTPLKLAAKEGKIEIFRHILQ--------REFSGAAAH 251

Query: 98  H 98
           H
Sbjct: 252 H 252

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  106 bits (268), Expect = 2e-27
 Identities = 47/163 (28%), Positives = 70/163 (42%), Gaps = 17/163 (10%)

Query: 24  NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL 83
           +    L  +   G  +  R L+    D+++  D  G TPLH AA  G + I++ +L    
Sbjct: 13  DLGKKLLEAARAGRDDEVRILMANGADVNA-EDASGWTPLHLAAFNGHLEIVEVLLK--- 68

Query: 84  QSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAG 139
             A        G T L L       E V+ L     +   A  N  D +G+T LHLA   
Sbjct: 69  NGADVNAVDHAGMTPLRLAALFGHLEIVEVL-----LKNGADVNANDMEGHTPLHLAAMF 123

Query: 140 KLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
               +V  LLK G DVNA ++ G TA D+    + ++G   + 
Sbjct: 124 GHLEIVEVLLKNGADVNAQDKFGKTAFDI----SIDNGNEDLA 162

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 92.0 bits (230), Expect = 3e-22
 Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 13/135 (9%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 79
            +D +G TPLHL+   GHLEI   LLK   D+++  D+ G TPL  AA+ G + I++ +L
Sbjct: 42  AEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA-VDHAGMTPLRLAALFGHLEIVEVLL 100

Query: 80  SLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM--PDNDGNTILHL 135
                 A      + G T LHL       E V+ L     +   A++   D  G T   +
Sbjct: 101 K---NGADVNANDMEGHTPLHLAAMFGHLEIVEVL-----LKNGADVNAQDKFGKTAFDI 152

Query: 136 ATAGKLTTMVIYLLK 150
           +       +   L K
Sbjct: 153 SIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 84.0 bits (209), Expect = 3e-19
 Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 16/139 (11%)

Query: 56  DNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLM 113
            ++    L  AA  GR + +  +++     A        G T LHL   N   E V+ L 
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMA---NGADVNAEDASGWTPLHLAAFNGHLEIVEVL- 66

Query: 114 ETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVES 171
               +   A  N  D+ G T L LA       +V  LLK G DVNA + +G+T L +   
Sbjct: 67  ----LKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHL--- 119

Query: 172 DASNSGALQIVPALEEAGA 190
            A+  G L+IV  L + GA
Sbjct: 120 -AAMFGHLEIVEVLLKNGA 137

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 62.8 bits (154), Expect = 6e-12
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 79
             D+ GHTPLHL+   GHLEI   LLK   D+++  D  G+T    +   G  ++ + + 
Sbjct: 108 ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQ 166

Query: 80  SLN 82
            LN
Sbjct: 167 KLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 40.8 bits (97), Expect = 2e-04
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 11/55 (20%)

Query: 2   HVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLD 48
           H+A      +IV+ LL+  A       +D  G T   +S   G+ ++   L KL+
Sbjct: 118 HLAAMFGHLEIVEVLLKNGADVN---AQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  108 bits (272), Expect = 2e-27
 Identities = 43/200 (21%), Positives = 67/200 (33%), Gaps = 39/200 (19%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLP----DNEGRTPLHWAAIKGRINII 75
           ++   G T LH++    +LE    L++  P+L   P      EG+T LH A I   +N++
Sbjct: 32  QRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLV 91

Query: 76  DEIL-------------SLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA 122
              L             S+          +GE  L         E V+ L     I   A
Sbjct: 92  -RALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLL-----IEHGA 145

Query: 123 --NMPDNDGNTILHLATAGKLTTMVI----YLLKLGVDVNA------INRKGYTALDVVE 170
                D+ GNT+LH+       T        LL      +        N +G T   +  
Sbjct: 146 DIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKL-- 203

Query: 171 SDASNSGALQIVPALEEAGA 190
             A   G + +   L +   
Sbjct: 204 --AGVEGNIVMFQHLMQKRK 221

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  103 bits (259), Expect = 1e-25
 Identities = 32/159 (20%), Positives = 54/159 (33%), Gaps = 20/159 (12%)

Query: 25  GHTPLHLSCSKGHLEITRELLKL---DPDLSSLPDNEGRTPLHWAAIKGRINIIDEILS- 80
             +PL L+  +  ++   +LLK    +          G T LH AA+   +     ++  
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQR---GAMGETALHIAALYDNLEAAMVLMEA 59

Query: 81  ---LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME----------TLNITKLANMPDN 127
              L  +        G+T LH+ V N     V+ L+                   +    
Sbjct: 60  APELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIY 119

Query: 128 DGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTAL 166
            G   L  A       +V  L++ G D+ A +  G T L
Sbjct: 120 YGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL 158

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 55.7 bits (135), Expect = 4e-09
 Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 21/132 (15%)

Query: 91  IHGETVLHLTVKNNQYEAV-KYLMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIY 147
           +  E+ L L  K N  +A+ K L       +    +     G T LH+A         + 
Sbjct: 1   MIWESPLLLAAKENDVQALSKLL-----KFEGCEVHQRGAMGETALHIAALYDNLEAAMV 55

Query: 148 LLKLGVDV-----NAINRKGYTALDVVESDASNSGALQIVPALEEAGA----RRCDQLPP 198
           L++   ++      +   +G TAL +    A  +  + +V AL   GA    R    +  
Sbjct: 56  LMEAAPELVFEPMTSELYEGQTALHI----AVINQNVNLVRALLARGASVSARATGSVFH 111

Query: 199 MSPHDIQPIGDT 210
             PH++   G+ 
Sbjct: 112 YRPHNLIYYGEH 123

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  106 bits (267), Expect = 2e-27
 Identities = 41/174 (23%), Positives = 63/174 (36%), Gaps = 17/174 (9%)

Query: 21  KDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILS 80
            +      L  +   G +E  ++L  +        +    TPLH+AA   R+++++ +L 
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63

Query: 81  LNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLA 136
                A    +   G   LH       YE  + L     +   A  N+ D    T LH A
Sbjct: 64  ---HGADVHAKDKGGLVPLHNACSYGHYEVAELL-----VKHGAVVNVADLWKFTPLHEA 115

Query: 137 TAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
            A     +   LL+ G D    NR G T LD+      + G   I   L    A
Sbjct: 116 AAKGKYEICKLLLQHGADPTKKNRDGNTPLDL----VKD-GDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 92.5 bits (231), Expect = 2e-22
 Identities = 35/161 (21%), Positives = 54/161 (33%), Gaps = 20/161 (12%)

Query: 2   HVA------DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLP 55
             A      + VK+L   +       +    TPLH +     + +   LL+   D+ +  
Sbjct: 13  LEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA-K 71

Query: 56  DNEGRTPLHWAAIKGRINIIDEILSLNLQSAEM--RTIHGETVLHLTVKNNQYEAVKYLM 113
           D  G  PLH A   G   + + ++      A +    +   T LH      +YE  K L 
Sbjct: 72  DKGGLVPLHNACSYGHYEVAELLVK---HGAVVNVADLWKFTPLHEAAAKGKYEICKLL- 127

Query: 114 ETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLG 152
               +   A     + DGNT L L   G        L    
Sbjct: 128 ----LQHGADPTKKNRDGNTPLDLVKDGDTDI-QDLLRGDA 163

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  105 bits (265), Expect = 5e-27
 Identities = 35/177 (19%), Positives = 58/177 (32%), Gaps = 22/177 (12%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 79
           +    G     +    GH         +  D+     +E  TP   AA K     +   L
Sbjct: 9   RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQAL-SQL 63

Query: 80  SLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM---PDNDGNTILH 134
              L+    +    +G T L         + V+ L         A++       G T LH
Sbjct: 64  ---LEDRDVDAVDENGRTALLFVAGLGSDKCVRLL-----AEAGADLDHRDMRGGLTALH 115

Query: 135 LATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGAR 191
           +A       +V  L++LG D+   + +G TAL++    A             + G R
Sbjct: 116 MAAGYVRPEVVEALVELGADIEVEDERGLTALEL----AREILKTTPKGNPMQFGRR 168

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 94.1 bits (235), Expect = 8e-23
 Identities = 33/162 (20%), Positives = 51/162 (31%), Gaps = 27/162 (16%)

Query: 5   DIVKELLEARQEFAWKKDLN--GHTPLHLSCSKGHLEITRELLK-LDPDLSSLPDNEGRT 61
                            D+     TP   +  K   +   +LL+  D D     D  GRT
Sbjct: 28  PSWVPSSYI------AADVVSEYETPWWTAARKADEQALSQLLEDRDVD---AVDENGRT 78

Query: 62  PLHWAAIKGRINIIDEILS----LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 117
            L + A  G    +  +      L+ +        G T LH+     + E V+ L     
Sbjct: 79  ALLFVAGLGSDKCVRLLAEAGADLDHRDMR----GGLTALHMAAGYVRPEVVEAL----- 129

Query: 118 ITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNA 157
           +   A   + D  G T L LA     TT     ++ G  +  
Sbjct: 130 VELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL 171

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 7/65 (10%), Positives = 18/65 (27%), Gaps = 7/65 (10%)

Query: 121 LANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQ 180
           + +    +G     +      +   +    +  DV +   +  T        A+     Q
Sbjct: 6   IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPW----WTAARKADEQ 58

Query: 181 IVPAL 185
            +  L
Sbjct: 59  ALSQL 63

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  103 bits (259), Expect = 2e-25
 Identities = 35/177 (19%), Positives = 58/177 (32%), Gaps = 22/177 (12%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 79
           +    G     +    GH         +  D+     +E  TP   AA K     +   L
Sbjct: 10  RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQAL-SQL 64

Query: 80  SLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM---PDNDGNTILH 134
              L+    +    +G T L         + V+ L         A++       G T LH
Sbjct: 65  ---LEDRDVDAVDENGRTALLFVAGLGSDKCVRLL-----AEAGADLDHRDMRGGLTALH 116

Query: 135 LATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGAR 191
           +A       +V  L++LG D+   + +G TAL++    A             + G R
Sbjct: 117 MAAGYVRPEVVEALVELGADIEVEDERGLTALEL----AREILKTTPKGNPMQFGRR 169

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 99.2 bits (248), Expect = 5e-24
 Identities = 35/195 (17%), Positives = 60/195 (30%), Gaps = 34/195 (17%)

Query: 5   DIVKELLEARQEFAWKKDLN--GHTPLHLSCSKGHLEITRELLK-LDPDLSSLPDNEGRT 61
                            D+     TP   +  K   +   +LL+  D D     D  GRT
Sbjct: 29  PSWVPSSYI------AADVVSEYETPWWTAARKADEQALSQLLEDRDVD---AVDENGRT 79

Query: 62  PLHWAAIKGRINIIDEILS----LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 117
            L + A  G    +  +      L+ +        G T LH+     + E V+ L     
Sbjct: 80  ALLFVAGLGSDKCVRLLAEAGADLDHRDMR----GGLTALHMAAGYVRPEVVEAL----- 130

Query: 118 ITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASN 175
           +   A   + D  G T L LA     TT     ++ G  +     +    +     +   
Sbjct: 131 VELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL---EKVINV----LEGQV 183

Query: 176 SGALQIVPALEEAGA 190
               ++   +E+ G 
Sbjct: 184 FEYAEVDEIVEKRGK 198

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 94.2 bits (235), Expect = 3e-22
 Identities = 33/183 (18%), Positives = 54/183 (29%), Gaps = 28/183 (15%)

Query: 5   DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLH 64
             + +LLE R   A   D NG T L      G  +  R L +   DL       G T LH
Sbjct: 59  QALSQLLEDRDVDA--VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALH 116

Query: 65  WAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLME-------- 114
            AA   R  +++ ++      A  E+    G T L L  +  +       M+        
Sbjct: 117 MAAGYVRPEVVEALVE---LGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLE 173

Query: 115 ---------TLNITKLANM--PDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGY 163
                         ++  +      G  + +L                  +  A + +  
Sbjct: 174 KVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYE-- 231

Query: 164 TAL 166
             L
Sbjct: 232 DGL 234

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 7/65 (10%), Positives = 18/65 (27%), Gaps = 7/65 (10%)

Query: 121 LANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQ 180
           + +    +G     +      +   +    +  DV +   +  T        A+     Q
Sbjct: 7   IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPW----WTAARKADEQ 59

Query: 181 IVPAL 185
            +  L
Sbjct: 60  ALSQL 64

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  100 bits (252), Expect = 2e-25
 Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 19/172 (11%)

Query: 24  NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL 83
                L  + ++G LE    LL+ + ++++  +  GRT L      G   I   +L    
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQVMK-LGNPEIARRLLL--- 58

Query: 84  QSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAG 139
           + A  +++   G  V+H   +    + ++ L     +   A  N+ DN+GN  LHLA   
Sbjct: 59  RGANPDLKDRTGFAVIHDAARAGFLDTLQTL-----LEFQADVNIEDNEGNLPLHLAAKE 113

Query: 140 KLTTMVIYLLKLG-VDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
               +V +L+K    +V   N KG TA D+    A   G  ++V  ++  GA
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTACDL----ARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 87.8 bits (219), Expect = 8e-21
 Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 13/137 (9%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 79
            ++  G T L +    G+ EI R LL    +     D  G   +H AA  G ++ +  +L
Sbjct: 33  AQNGFGRTALQVM-KLGNPEIARRLLLRGANPDL-KDRTGFAVIHDAARAGFLDTLQTLL 90

Query: 80  SLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLME--TLNITKLANMPDNDGNTILHL 135
                 A   +    G   LHL  K      V++L++    N+       ++ G+T   L
Sbjct: 91  E---FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV----GHRNHKGDTACDL 143

Query: 136 ATAGKLTTMVIYLLKLG 152
           A       +V  +   G
Sbjct: 144 ARLYGRNEVVSLMQANG 160

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 80.9 bits (201), Expect = 3e-18
 Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 11/120 (9%)

Query: 2   HVA-----DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSL 54
            V      +I + LL   A  +    KD  G   +H +   G L+  + LL+   D++  
Sbjct: 43  QVMKLGNPEIARRLLLRGANPD---LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI- 98

Query: 55  PDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME 114
            DNEG  PLH AA +G + +++ ++     +   R   G+T   L     + E V  +  
Sbjct: 99  EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 78.6 bits (195), Expect = 1e-17
 Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 15/138 (10%)

Query: 56  DNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLM 113
                  L  AA +G +  +  +L     +     +   G T L +    N  E  + L+
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQ---NNVNVNAQNGFGRTALQVMKLGNP-EIARRLL 57

Query: 114 ET-LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESD 172
               N     ++ D  G  ++H A        +  LL+   DVN  + +G   L +    
Sbjct: 58  LRGANP----DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHL---- 109

Query: 173 ASNSGALQIVPALEEAGA 190
           A+  G L++V  L +  A
Sbjct: 110 AAKEGHLRVVEFLVKHTA 127

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  102 bits (257), Expect = 2e-25
 Identities = 37/169 (21%), Positives = 59/169 (34%), Gaps = 18/169 (10%)

Query: 7   VKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLH 64
           ++ +L        A +  LN    L  +   G LE+ ++ +K   D S  P+ EG T LH
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQ-PNEEGITALH 59

Query: 65  WAAIKGRINIIDEILSLNLQSAEM--RTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA 122
            A      +I+D +++     A +     HG T LH     N       L     +   A
Sbjct: 60  NAICGANYSIVDFLIT---AGANVNSPDSHGWTPLHCAASCNDTVICMAL-----VQHGA 111

Query: 123 N---MPDNDGNTILHLATAGKLTT--MVIYLLKLGVDVNAINRKGYTAL 166
                  +DG T        +        YL  +   +  +N     AL
Sbjct: 112 AIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL 160

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 96.2 bits (240), Expect = 4e-23
 Identities = 30/181 (16%), Positives = 63/181 (34%), Gaps = 12/181 (6%)

Query: 5   DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLH 64
           ++V++ ++   + + + +  G T LH +    +  I   L+    +++S PD+ G TPLH
Sbjct: 35  EVVQQAVKEMNDPS-QPNEEGITALHNAICGANYSIVDFLITAGANVNS-PDSHGWTPLH 92

Query: 65  WAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHL--TVKNNQYEAVKYLMETLNITKLA 122
            AA      I   ++             G T        +    +   YL    ++ +  
Sbjct: 93  CAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYL---ADVEQSM 149

Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
            + ++     L    + +    + +     V V   +    T        A+  G    V
Sbjct: 150 GLMNSGAVYALWDY-SAEFGDELSFREGESVTVLRRDGPEETDWWW----AALHGQEGYV 204

Query: 183 P 183
           P
Sbjct: 205 P 205

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 64.6 bits (158), Expect = 4e-12
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 11/100 (11%)

Query: 93  GETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLK 150
              +L       + E V+       + ++   + P+ +G T LH A  G   ++V +L+ 
Sbjct: 21  PLVLLLDAALTGELEVVQQA-----VKEMNDPSQPNEEGITALHNAICGANYSIVDFLIT 75

Query: 151 LGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
            G +VN+ +  G+T L      A++     I  AL + GA
Sbjct: 76  AGANVNSPDSHGWTPLHC----AASCNDTVICMALVQHGA 111

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  102 bits (257), Expect = 3e-25
 Identities = 43/215 (20%), Positives = 66/215 (30%), Gaps = 50/215 (23%)

Query: 20  KKDLNGHTPLH---LSCSKGHLEITRELLKLDPDLSSLP----------DNEGRTPLHWA 66
           ++   G T L    L+ S G  +    LL +     ++              G+T LH A
Sbjct: 41  REPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIA 100

Query: 67  AIKGR-------------INIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLM 113
             +               ++          +        GE  L L    NQ   V YL 
Sbjct: 101 IERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160

Query: 114 ETLNITKLA--NMPDNDGNTILHLATAGK---------LTTMVIYLLKLGVDVNA----- 157
           E  N  K A     D+ GNT+LH   A           +T M   LL     +       
Sbjct: 161 E--NGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLE 218

Query: 158 --INRKGYTALDVVESDASNSGALQIVPALEEAGA 190
             +N  G + L +    A+ +G + I   +     
Sbjct: 219 ALLNNDGLSPLMM----AAKTGKIGIFQHIIRREI 249

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 77.1 bits (190), Expect = 4e-16
 Identities = 39/220 (17%), Positives = 70/220 (31%), Gaps = 37/220 (16%)

Query: 26  HTPLHLSCSKGHLEITRELLKLDPDLS---SLPDNEGRTPLHWAAI---KGRINIIDEIL 79
              +      G   +   LL     L+       + G+T L  A +    GR + I  +L
Sbjct: 10  FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILL 69

Query: 80  SLNLQSAEMRTI----------HGETVLHLTVKNNQYEAVKYLME-----------TLNI 118
            +  ++  MR             G+T LH+ ++      V+ L+E               
Sbjct: 70  DIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQ 129

Query: 119 TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG---VDVNAINRKGYTALDVVESDASN 175
            K        G   L LA       +V YL + G    D+   + +G T L  + + A N
Sbjct: 130 PKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADN 189

Query: 176 S-----GALQIVPALEEAGARRCDQLPPMSPHDIQPIGDT 210
           +        ++   L    A+        +  +    G +
Sbjct: 190 TRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNND--GLS 227

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 65.6 bits (160), Expect = 3e-12
 Identities = 39/168 (23%), Positives = 61/168 (36%), Gaps = 36/168 (21%)

Query: 59  GRTPLHWAAIKGRINIIDEILSL------NLQSAEM-RTIHGETVLHLTVKNNQY---EA 108
            R  L     +G  + ++ +LS        L   E      G+T L   + N      + 
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 109 VKYLME----TLNITKLANMPDND----GNTILHLATAGKLTTMVIYLLKLGVDVNAINR 160
           +  L++    T N+ +  N P  D    G T LH+A   +    V  L++ G DV+A  R
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 161 K--------------GYTALDVVESDASNSGALQIVPALEEAGARRCD 194
                          G   L    S A+ +    IV  L E G ++ D
Sbjct: 125 GRFFQPKDEGGYFYFGELPL----SLAACTNQPHIVHYLTENGHKQAD 168

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 61.7 bits (150), Expect = 6e-11
 Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 17/105 (16%)

Query: 5   DIVKELLEARQEFA--WKKDLNGHTPLHLSCSKGH---------LEITRELLKLDPDL-- 51
            IV  L E   + A   ++D  G+T LH   +             ++   LL     L  
Sbjct: 154 HIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFP 213

Query: 52  ----SSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIH 92
                +L +N+G +PL  AA  G+I I   I+   +  A     H
Sbjct: 214 DTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHH 258

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  103 bits (259), Expect = 4e-25
 Identities = 33/200 (16%), Positives = 70/200 (35%), Gaps = 32/200 (16%)

Query: 2   HVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS 53
           H A       IVK LL          + D  G+T L+ +   G+++  +  +K +  L  
Sbjct: 67  HQAATLEDTKIVKILLFSGLDDS---QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMF 123

Query: 54  LPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLM 113
                 +T  + A +   ++I+     L+   +        + +H+T+KN   + +  L 
Sbjct: 124 YGKTGWKTSFYHAVMLNDVSIV-SYF-LSEIPSTFDLAILLSCIHITIKNGHVDMMILL- 180

Query: 114 ETLNITKLA--NMPDNDGNT-ILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVE 170
               +  +   N  ++      + LA   K   M+  L K  +++ + N           
Sbjct: 181 ----LDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL---------- 226

Query: 171 SDASNSGALQIVPALEEAGA 190
            +       +I   + E   
Sbjct: 227 -ENVLLDDAEIAKMIIEKHV 245

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  102 bits (257), Expect = 6e-25
 Identities = 29/178 (16%), Positives = 56/178 (31%), Gaps = 25/178 (14%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNE--GRTPLHWAAIKGRINIIDE 77
           K D++GH+  + + +  ++ +   LL           N      PLH AA      I+  
Sbjct: 26  KADVHGHSASYYAIADNNVRLVCTLLNAGALK-----NLLENEFPLHQAATLEDTKIVKI 80

Query: 78  ILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDG-NTI 132
           +L               G T L+  V +   + VK       + K          G  T 
Sbjct: 81  LLF---SGLDDSQFDDKGNTALYYAVDSGNMQTVKLF-----VKKNWRLMFYGKTGWKTS 132

Query: 133 LHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
            + A      ++V Y L        +     + + +       +G + ++  L +   
Sbjct: 133 FYHAVMLNDVSIVSYFLSEIPSTFDLA-ILLSCIHI----TIKNGHVDMMILLLDYMT 185

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 93.7 bits (234), Expect = 1e-21
 Identities = 18/177 (10%), Positives = 44/177 (24%), Gaps = 30/177 (16%)

Query: 2   HVA------DIVKELLE--ARQEFAWKKDLNG-HTPLHLSCSKGHLEITRELLKLDPDLS 52
           + A        VK  ++   R          G  T  + +     + I    L   P   
Sbjct: 100 YYAVDSGNMQTVKLFVKKNWRLM---FYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF 156

Query: 53  SLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGET-VLHLTVKNNQYEAV 109
                   + +H     G ++++  +L                    + L + N   E +
Sbjct: 157 D--LAILLSCIHITIKNGHVDMMILLLD---YMTSTNTNNSLLFIPDIKLAIDNKDIEML 211

Query: 110 KYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTAL 166
           + L          N       +            +   +++  V+  + +      +
Sbjct: 212 QAL-----FKYDIN-----IYSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDI 258

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 83.7 bits (208), Expect = 3e-18
 Identities = 22/172 (12%), Positives = 49/172 (28%), Gaps = 33/172 (19%)

Query: 2   HVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS 53
           + A       IV   L                 + +H++   GH+++   LL      ++
Sbjct: 134 YHAVMLNDVSIVSYFLSEIPSTF----DLAILLSCIHITIKNGHVDMMILLLDYMTSTNT 189

Query: 54  LPDNEGRTP-LHWAAIKGRINIIDEILSLNLQSAEMRTIHG---ETVLHLTVKNNQYEAV 109
             ++    P +  A     I ++  +             +     +     V  +  E  
Sbjct: 190 -NNSLLFIPDIKLAIDNKDIEMLQALFK-----------YDINIYSANLENVLLDDAEIA 237

Query: 110 KYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK 161
           K +     I K      +     L +    KL  ++    +L +      +K
Sbjct: 238 KMI-----IEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYVNCVKK 284

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 72.2 bits (178), Expect = 2e-14
 Identities = 28/167 (16%), Positives = 48/167 (28%), Gaps = 49/167 (29%)

Query: 25  GHTPLHLSCSKGHLEITRELLK-LDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL 83
           G     ++      +  +  L   D   +   D  G +  ++A     + +         
Sbjct: 1   GMDLSRINT--WKSKQLKSFLSSKDTFKA---DVHGHSASYYAIADNNVRL--------- 46

Query: 84  QSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTT 143
                                    V  L     +   A     +    LH A   + T 
Sbjct: 47  -------------------------VCTL-----LNAGALKNLLENEFPLHQAATLEDTK 76

Query: 144 MVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
           +V  LL  G+D +  + KG TAL      A +SG +Q V    +   
Sbjct: 77  IVKILLFSGLDDSQFDDKGNTALYY----AVDSGNMQTVKLFVKKNW 119

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  101 bits (253), Expect = 6e-25
 Identities = 48/171 (28%), Positives = 71/171 (41%), Gaps = 9/171 (5%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 79
           + D +  T LH +CS GH EI   LL+L   ++   D+ G +PLH AA  G   I+  +L
Sbjct: 35  RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGXDEIVKALL 93

Query: 80  SLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAG 139
                       +G T LH     N++E    L+E        +  D+   T +H A A 
Sbjct: 94  V-KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG---GANPDAKDHYDATAMHRAAAK 149

Query: 140 KLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
               MV  LL      N  + +G T L +    A +   ++    L   GA
Sbjct: 150 GNLKMVHILLFYKASTNIQDTEGNTPLHL----ACDEERVEEAKFLVTQGA 196

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 96.5 bits (240), Expect = 4e-23
 Identities = 39/173 (22%), Positives = 68/173 (39%), Gaps = 13/173 (7%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 79
           +  ++     +L+ S    E+   +L      +   D + RT LHWA   G   I++ +L
Sbjct: 2   EGCVSNIMICNLAYSGKLDELKERILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLL 60

Query: 80  SLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLAT 137
                      +   G + LH+       E VK L+         N  + +G T LH A 
Sbjct: 61  Q---LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK---GAHVNAVNQNGCTPLHYAA 114

Query: 138 AGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
           +     + + LL+ G + +A +    TA+      A+  G L++V  L    A
Sbjct: 115 SKNRHEIAVMLLEGGANPDAKDHYDATAMHR----AAAKGNLKMVHILLFYKA 163

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 91.5 bits (227), Expect = 2e-21
 Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 11/171 (6%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 79
            KD  G +PLH++ S G  EI + LL     +++  +  G TPLH+AA K R  I   +L
Sbjct: 68  DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA-VNQNGCTPLHYAASKNRHEIAVMLL 126

Query: 80  SLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAG 139
                + + +  +  T +H        + V  L+         N+ D +GNT LHLA   
Sbjct: 127 EGG-ANPDAKDHYDATAMHRAAAKGNLKMVHILLFY---KASTNIQDTEGNTPLHLACDE 182

Query: 140 KLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
           +      +L+  G  +   N++  T L V        G L ++      G 
Sbjct: 183 ERVEEAKFLVTQGASIYIENKEEKTPLQVA------KGGLGLILKRLAEGE 227

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 80.7 bits (199), Expect = 1e-17
 Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 14/161 (8%)

Query: 2   HVA------DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLP 55
           H+A      +IVK LL          + NG TPLH + SK   EI   LL+   +  +  
Sbjct: 78  HIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-K 135

Query: 56  DNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET 115
           D+   T +H AA KG + ++  +L     S  ++   G T LHL     + E  K+L+  
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYK-ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ 194

Query: 116 LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVN 156
                   + + +  T L +A  G    +++  L  G + +
Sbjct: 195 ---GASIYIENKEEKTPLQVAKGGL--GLILKRLAEGEEAS 230

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 98.3 bits (246), Expect = 7e-25
 Identities = 34/174 (19%), Positives = 56/174 (32%), Gaps = 50/174 (28%)

Query: 21  KDLNGHTPLHLSCSKGHLEITRELLKL--DPDLSSLPDNEGRTPLHWAAIKGRINIIDEI 78
            +  G T LH++  KG +     LL+   DP++    D+ G TPLH A            
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK---DHAGWTPLHEAC----------- 51

Query: 79  LSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLA 136
                                   +   + V+ L     +   A  N      ++ LH A
Sbjct: 52  -----------------------NHGHLKVVELL-----LQHKALVNTTGYQNDSPLHDA 83

Query: 137 TAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
                  +V  LL  G   NA+N  G   +D       +     ++   E+  +
Sbjct: 84  AKNGHVDIVKLLLSYGASRNAVNIFGLRPVDY----TDDESMKSLLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 82.5 bits (205), Expect = 4e-19
 Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 13/119 (10%)

Query: 2   HVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS 53
           H+A        V+ LL+  +       KD  G TPLH +C+ GHL++   LL+    +++
Sbjct: 15  HIASIKGDIPSVEYLLQNGSDPN---VKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71

Query: 54  LPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 112
               +  +PLH AA  G ++I+ ++L     S     I G   +  T   +    +   
Sbjct: 72  -TGYQNDSPLHDAAKNGHVDIV-KLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLP 128

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 40.1 bits (95), Expect = 2e-04
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 11/53 (20%)

Query: 2   HVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK 46
           H A      DIVK LL   A +      ++ G  P+  +  +    +     K
Sbjct: 81  HDAAKNGHVDIVKLLLSYGASRN---AVNIFGLRPVDYTDDESMKSLLLLPEK 130

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  101 bits (252), Expect = 2e-24
 Identities = 44/213 (20%), Positives = 72/213 (33%), Gaps = 46/213 (21%)

Query: 20  KKDLNGHTPLH---LSCSKGHLEITRELLKLDPDLSSLP----------DNEGRTPLHWA 66
           K    G T L    L+   G  +    LL +     SL             +G+T LH A
Sbjct: 49  KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIA 108

Query: 67  AIKGRINII-------------DEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLM 113
             +  + ++                              GE  L L    NQ   VK+L+
Sbjct: 109 IERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL 168

Query: 114 ETLNITKLANMPDNDGNTILHLA---------TAGKLTTMVIYLLKLGVDVN-------A 157
           +        +  D+ GNT+LH               +T+M   +L LG  ++        
Sbjct: 169 QNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEI 228

Query: 158 INRKGYTALDVVESDASNSGALQIVPALEEAGA 190
            NRKG T L +    A++SG + ++  + +   
Sbjct: 229 TNRKGLTPLAL----AASSGKIGVLAYILQREI 257

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 91.4 bits (227), Expect = 5e-21
 Identities = 35/201 (17%), Positives = 64/201 (31%), Gaps = 47/201 (23%)

Query: 5   DIVKELLEARQEFAWKKDL----------NGHTPLHLSCSKGHLEITRELLK-------- 46
           D +  LL+  ++    K             G T LH++  + ++ +   L++        
Sbjct: 71  DTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAA 130

Query: 47  -----LDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHL 99
                            G  PL  AA   ++ I+  +L  + Q A    R   G TVLH 
Sbjct: 131 ANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHA 190

Query: 100 TVKNNQYEAVKYLMETLNITKL-------------ANMPDNDGNTILHLATA-GKLTTMV 145
            V+            T    ++               + +  G T L LA + GK+  ++
Sbjct: 191 LVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKI-GVL 249

Query: 146 IYLLKLGVDVNAINRKGYTAL 166
            Y+L+  +             
Sbjct: 250 AYILQREIH-------EPECR 263

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 85.2 bits (211), Expect = 7e-19
 Identities = 33/216 (15%), Positives = 59/216 (27%), Gaps = 39/216 (18%)

Query: 21  KDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSL-------PDNEGRTPLHWAAIKGRIN 73
             L     +  + ++ + +    LL                    G+T L  A +     
Sbjct: 9   PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNG 68

Query: 74  IIDEILSL-----------NLQSAEMR--TIHGETVLHLTVKNNQYEAVKYLME------ 114
             D I  L              +A        G+T LH+ ++      V  L+E      
Sbjct: 69  QNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ 128

Query: 115 -----TLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG---VDVNAINRKGYTAL 166
                              G   L LA       +V +LL+      D++A +  G T L
Sbjct: 129 AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVL 188

Query: 167 DVV-----ESDASNSGALQIVPALEEAGARRCDQLP 197
             +      +  +      +   +   GA+    L 
Sbjct: 189 HALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLK 224

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 80.6 bits (199), Expect = 3e-17
 Identities = 28/171 (16%), Positives = 50/171 (29%), Gaps = 46/171 (26%)

Query: 2   HVA------DIVKELLEA-------------RQEFAWKKDLNGHTPLHLSCSKGHLEITR 42
           H+A       +V  L+E              ++         G  PL L+     L I +
Sbjct: 106 HIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVK 165

Query: 43  ELLKLDPDLSSL--PDNEGRTPLHWAAIKGRINI---------------IDEILSLNLQS 85
            LL+     + +   D+ G T LH         +               +   L   L+ 
Sbjct: 166 FLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKL 225

Query: 86  AEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLA 136
            E+    G T L L   + +   + Y+++           +       H A
Sbjct: 226 EEITNRKGLTPLALAASSGKIGVLAYILQR----------EIHEPECRHAA 266

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 73.7 bits (181), Expect = 6e-15
 Identities = 26/117 (22%), Positives = 39/117 (33%), Gaps = 25/117 (21%)

Query: 5   DIVKELLEARQEFA--WKKDLNGHTPLHLSCSKGHLEITRELLKLD-------------- 48
            IVK LL+   + A    +D  G+T LH         +                      
Sbjct: 162 AIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHP 221

Query: 49  -PDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNN 104
              L  + + +G TPL  AA  G+I ++  IL         R IH     H    ++
Sbjct: 222 TLKLEEITNRKGLTPLALAASSGKIGVLAYILQ--------REIHEPECRHAAAHHH 270

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 97.1 bits (243), Expect = 3e-24
 Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 24/165 (14%)

Query: 25  GHTPLHLSCSKGHLEITRELLKL---DPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL 81
               L  + ++G ++  R LL      PD     +  G+T L      G   I  E+L  
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDAL---NRFGKTALQVMM-FGSTAIALELLK- 56

Query: 82  NLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLAT 137
             Q A   ++   G + +H   +    + +K L     +   A  N+PD  G   +HLA 
Sbjct: 57  --QGASPNVQDTSGTSPVHDAARTGFLDTLKVL-----VEHGADVNVPDGTGALPIHLAV 109

Query: 138 AGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
               T +V +L     D++  + +G T L++    A   GA  +V
Sbjct: 110 QEGHTAVVSFLAA-ESDLHRRDARGLTPLEL----ALQRGAQDLV 149

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 92.1 bits (230), Expect = 2e-22
 Identities = 34/148 (22%), Positives = 54/148 (36%), Gaps = 11/148 (7%)

Query: 5   DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLH 64
             V+ LL          +  G T L +    G   I  ELLK     +   D  G +P+H
Sbjct: 16  QEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGASPNV-QDTSGTSPVH 73

Query: 65  WAAIKGRINIIDEILSLNLQSAEM--RTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA 122
            AA  G ++ +  ++      A++      G   +HL V+      V +L    ++    
Sbjct: 74  DAARTGFLDTLKVLVE---HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDL---- 126

Query: 123 NMPDNDGNTILHLATAGKLTTMVIYLLK 150
           +  D  G T L LA       +V  L  
Sbjct: 127 HRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 83.2 bits (207), Expect = 3e-19
 Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 17/122 (13%)

Query: 2   HVA-----DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSL 54
            V       I  ELL+  A       +D +G +P+H +   G L+  + L++   D++  
Sbjct: 41  QVMMFGSTAIALELLKQGASPN---VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV- 96

Query: 55  PDNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYL 112
           PD  G  P+H A  +G   ++   L      +    R   G T L L ++    + V  L
Sbjct: 97  PDGTGALPIHLAVQEGHTAVV-SFL---AAESDLHRRDARGLTPLELALQRGAQDLVDIL 152

Query: 113 ME 114
             
Sbjct: 153 QG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 129 GNTILHLATA-GKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEE 187
               L  A A G +  +   L +  V  +A+NR G TAL V        G+  I   L +
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV----MMF-GSTAIALELLK 56

Query: 188 AGA 190
            GA
Sbjct: 57  QGA 59

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  101 bits (253), Expect = 4e-24
 Identities = 40/189 (21%), Positives = 69/189 (36%), Gaps = 23/189 (12%)

Query: 19  WKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKG---RINII 75
              D +G+TPLH   S  +LE+ + L+K   +     DN G + L  A            
Sbjct: 125 IPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYG-DNMGESCLVKAVKSVNNYDSGTF 183

Query: 76  DEILSLNLQSAEMRTIHGETVLHLTVKNNQ----YEAVKYLMETLNITKLA------NMP 125
           + +L        +      T+LH  +  +       A KY ++ L +  +          
Sbjct: 184 EALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDIL-MGWIVKKQNRPIQS 242

Query: 126 DNDGNTILHLATAGKLTTMVIYLLKL----GVDVNAINRKGYTALDVVESDASNSGALQI 181
             +          G+    ++  L L       +NA +  G T L++    A+  G + I
Sbjct: 243 GTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNI----AARLGNISI 298

Query: 182 VPALEEAGA 190
           V AL + GA
Sbjct: 299 VDALLDYGA 307

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  100 bits (250), Expect = 7e-24
 Identities = 35/195 (17%), Positives = 66/195 (33%), Gaps = 27/195 (13%)

Query: 2   HVA------DIVKELLEARQEFA--WKKDLNGHTPLHLSCSKGH---LEITRELLKLDPD 50
           H        ++VK L++     +     D  G + L  +    +         LL     
Sbjct: 136 HWLTSIANLELVKHLVKH---GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP 192

Query: 51  LSSLPDNEGRTPLHWAAIKGRIN------------IIDEILSLNLQSAEMRTIHGETVLH 98
              L D+  RT LH   I   +             ++  I+    +  +  T   E+  +
Sbjct: 193 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN 252

Query: 99  LTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAI 158
                 +   ++ L     I  + N  D++G+T L++A      ++V  LL  G D    
Sbjct: 253 DKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA 312

Query: 159 NRKGYTALDV-VESD 172
           N+ G   +D     +
Sbjct: 313 NKSGLRPVDFGAGLE 327

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 80.1 bits (197), Expect = 1e-16
 Identities = 26/186 (13%), Positives = 55/186 (29%), Gaps = 18/186 (9%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 79
           +   +     H+S      E+         +L+   D  G TPLHW      + ++  ++
Sbjct: 92  EGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLV 151

Query: 80  SLNLQSAEMRTIHGETVLHLTVKNN---QYEAVKYLMETLNITKLANMPDNDGNTILHLA 136
                +       GE+ L   VK+         + L++ L       + D+   TILH  
Sbjct: 152 KHGS-NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCL--ILEDSMNRTILHHI 208

Query: 137 TA------------GKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPA 184
                           L  ++ +++K              +    ++       L+ +  
Sbjct: 209 IITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDL 268

Query: 185 LEEAGA 190
                 
Sbjct: 269 KWIIAN 274

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 62.4 bits (151), Expect = 7e-11
 Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 6/114 (5%)

Query: 55  PDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME 114
              +    L          +   + + +           +   H++  +   E       
Sbjct: 59  QKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN 118

Query: 115 T-LNITKLANMP-DNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTAL 166
           T LN+    N+P D  GNT LH  T+     +V +L+K G +    +  G + L
Sbjct: 119 TQLNL----NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCL 168

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 96.4 bits (241), Expect = 7e-24
 Identities = 27/158 (17%), Positives = 50/158 (31%), Gaps = 23/158 (14%)

Query: 24  NGHTPLHLSCSKGHLEITRELLKL--DPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL 81
                L  + ++G +E  R LL+   +P+    P++ GR P+      G   + + +L  
Sbjct: 11  PSADWLATAAARGRVEEVRALLEAGANPN---APNSYGRRPIQVMM-MGSARVAELLLL- 65

Query: 82  NLQSA--EMRTIHGETV-LHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLA 136
               A          T  +H   +    + +  L         A  ++ D  G   + LA
Sbjct: 66  --HGAEPNCADPATLTRPVHDAAREGFLDTLVVL-----HRAGARLDVRDAWGRLPVDLA 118

Query: 137 TAGKLTTMVIYLLKLGVDVNAINRKGYTAL----DVVE 170
                  +  YL          N     A     D+ +
Sbjct: 119 EELGHRDVARYLRAAAGGTRGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 81.0 bits (201), Expect = 2e-18
 Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 20/141 (14%)

Query: 56  DNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLM 113
                  L  AA +GR+  +  +L      A       +G   + + +  +     + L 
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLE---AGANPNAPNSYGRRPIQVMMMGS-ARVAELL- 63

Query: 114 ETLNITKLA--NMPDNDGNTI-LHLATA-GKLTTMVIYLLKLGVDVNAINRKGYTALDVV 169
               +   A  N  D    T  +H A   G L T ++ L + G  ++  +  G   +D+ 
Sbjct: 64  ----LLHGAEPNCADPATLTRPVHDAAREGFLDT-LVVLHRAGARLDVRDAWGRLPVDL- 117

Query: 170 ESDASNSGALQIVPALEEAGA 190
              A   G   +   L  A  
Sbjct: 118 ---AEELGHRDVARYLRAAAG 135

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 66.0 bits (162), Expect = 4e-13
 Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 22/118 (18%)

Query: 2   HVA-----DIVKELLE--ARQEFAWKKDLNGHT-PLHLSCSKGHLEITRELLKL--DPDL 51
            V       + + LL   A        D    T P+H +  +G L+    L +     D+
Sbjct: 50  QVMMMGSARVAELLLLHGAEPN---CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV 106

Query: 52  SSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAV 109
               D  GR P+  A   G  ++   + +    +       G     +       +  
Sbjct: 107 ---RDAWGRLPVDLAEELGHRDVARYLRA---AAGG---TRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 62.9 bits (154), Expect = 5e-12
 Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 93  GETVLHLTVKNNQYEAVKYLMET-LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKL 151
               L       + E V+ L+E   N     N P++ G   + +   G        LL  
Sbjct: 12  SADWLATAAARGRVEEVRALLEAGANP----NAPNSYGRRPIQVMMMGSARV-AELLLLH 66

Query: 152 GVDVNAINRKGYT-ALDVVESDASNSGALQIVPALEEAGAR 191
           G + N  +    T  +     DA+  G L  +  L  AGAR
Sbjct: 67  GAEPNCADPATLTRPV----HDAAREGFLDTLVVLHRAGAR 103

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 60.2 bits (147), Expect = 4e-11
 Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 17/83 (20%)

Query: 2   HVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS 53
           H A      D +  L    AR +    +D  G  P+ L+   GH ++ R L       ++
Sbjct: 83  HDAAREGFLDTLVVLHRAGARLD---VRDAWGRLPVDLAEELGHRDVARYL------RAA 133

Query: 54  LPDNEGRTPLHWAAIKGRINIID 76
                G       A +G  +I D
Sbjct: 134 AGGTRGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 50.2 bits (121), Expect = 1e-07
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 5/69 (7%)

Query: 122 ANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQI 181
           A          L  A A      V  LL+ G + NA N  G   + V        G+ ++
Sbjct: 5   AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQV----MMM-GSARV 59

Query: 182 VPALEEAGA 190
              L   GA
Sbjct: 60  AELLLLHGA 68

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 93.3 bits (233), Expect = 5e-23
 Identities = 26/174 (14%), Positives = 49/174 (28%), Gaps = 48/174 (27%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 79
               +    L  + ++G +E  R+LL+   D ++  +  GR P+                
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLEAGADPNA-LNRFGRRPIQVMM------------ 53

Query: 80  SLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTI-LHLA 136
                                      +  + L     +   A  N  D    T  +H A
Sbjct: 54  -----------------------MGSAQVAELL-----LLHGAEPNCADPATLTRPVHDA 85

Query: 137 TAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
                   ++ L + G  ++  +  G   +D+    A   G   I   L  A  
Sbjct: 86  AREGFLDTLVVLHRAGARLDVCDAWGRLPVDL----AEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 64.0 bits (157), Expect = 1e-12
 Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 11/106 (10%)

Query: 87  EMRTIHGETVLHLTVKNNQYEAVKYLMET-LNITKLANMPDNDGNTILHLATAGKLTTMV 145
            M     +  L       Q E V+ L+E   +     N  +  G   + +   G    + 
Sbjct: 6   HMLGGSSDAGLATAAARGQVETVRQLLEAGADP----NALNRFGRRPIQVMMMGSA-QVA 60

Query: 146 IYLLKLGVDVNAINRKGYT-ALDVVESDASNSGALQIVPALEEAGA 190
             LL  G + N  +    T  +     DA+  G L  +  L  AGA
Sbjct: 61  ELLLLHGAEPNCADPATLTRPV----HDAAREGFLDTLVVLHRAGA 102

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 45.5 bits (109), Expect = 3e-06
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 11/53 (20%)

Query: 2   HVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK 46
           H A      D +  L    AR +     D  G  P+ L+  +GH +I R L  
Sbjct: 83  HDAAREGFLDTLVVLHRAGARLD---VCDAWGRLPVDLAEEQGHRDIARYLHA 132

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 93.6 bits (233), Expect = 1e-22
 Identities = 23/164 (14%), Positives = 49/164 (29%), Gaps = 12/164 (7%)

Query: 5   DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTP 62
           +   EL E     + +  K    +  L  +  +   +I+  L+    D+ S    EG T 
Sbjct: 20  EDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS-RTKEGTTL 78

Query: 63  LHWAAIKGRINIIDEILSLNL---QSAEM--RTIHGETVLHLTVKNNQYEAVKY--LMET 115
                  G  +I        +   + A++       + V+   + N   +  +   L + 
Sbjct: 79  FFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKL 138

Query: 116 LNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNA 157
           +         + D  G T L      +    +  +       N 
Sbjct: 139 IFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNL 182

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 92.8 bits (231), Expect = 2e-22
 Identities = 20/183 (10%), Positives = 49/183 (26%), Gaps = 23/183 (12%)

Query: 23  LNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLN 82
           ++ +  +  +   G  E   EL +   +            L+            +I    
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYEDKE--SVLKSNILYDVLRNNNDEARYKISMF- 60

Query: 83  LQSA----EMRTIHGETVLHLTVKNNQYEAVKY--LMETLNITKLA--NMPDNDGNTILH 134
           L +     + RT  G T+     +    +      L +   + K A           ++ 
Sbjct: 61  LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIF-LEKGADITALYKPYKIVVF 119

Query: 135 LA-------TAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEE 187
                        +    +   + G+ +   ++ G TAL+              +  +E+
Sbjct: 120 KNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF----VKRCQKPIALKMMED 175

Query: 188 AGA 190
              
Sbjct: 176 YIK 178

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 90.9 bits (227), Expect = 3e-22
 Identities = 59/169 (34%), Positives = 77/169 (45%), Gaps = 46/169 (27%)

Query: 24  NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL 83
           NG TPLHL+   GHLE+ + LL+   D+++  D  GRTPLH AA  G             
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNG------------- 46

Query: 84  QSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAGKL 141
                         HL       E VK L     +   A  N  D +G T LHLA     
Sbjct: 47  --------------HL-------EVVKLL-----LEAGADVNAKDKNGRTPLHLAARNGH 80

Query: 142 TTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
             +V  LL+ G DVNA ++ G T L +    A+ +G L++V  L EAGA
Sbjct: 81  LEVVKLLLEAGADVNAKDKNGRTPLHL----AARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 80.1 bits (199), Expect = 2e-18
 Identities = 46/121 (38%), Positives = 63/121 (52%), Gaps = 17/121 (14%)

Query: 2   HVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS 53
           H+A      ++VK LLE  A       KD NG TPLHL+   GHLE+ + LL+   D+++
Sbjct: 7   HLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 54  LPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKY 111
             D  GRTPLH AA  G + ++  +L      A    +  +G T LHL  +N   E VK 
Sbjct: 64  -KDKNGRTPLHLAARNGHLEVVKLLLE---AGADVNAKDKNGRTPLHLAARNGHLEVVKL 119

Query: 112 L 112
           L
Sbjct: 120 L 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 64.7 bits (159), Expect = 4e-13
 Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 12/87 (13%)

Query: 2   HVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS 53
           H+A      ++VK LLE  A       KD NG TPLHL+   GHLE+ + LL+   D+++
Sbjct: 40  HLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 96

Query: 54  LPDNEGRTPLHWAAIKGRINIIDEILS 80
             D  GRTPLH AA  G + ++  +L 
Sbjct: 97  K-DKNGRTPLHLAARNGHLEVVKLLLE 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 90.1 bits (225), Expect = 4e-22
 Identities = 31/162 (19%), Positives = 50/162 (30%), Gaps = 48/162 (29%)

Query: 24  NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL 83
                   +   G L+  ++ +    D++      GR PLH+AA  G++ I         
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGEDVNR-TLEGGRKPLHYAADCGQLEI--------- 55

Query: 84  QSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATA-GK 140
                                    +++L     + K A  N PD    T L  A   G 
Sbjct: 56  -------------------------LEFL-----LLKGADINAPDKHHITPLLSAVYEGH 85

Query: 141 LTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
           ++  V  LL  G D       G TA +       N     ++
Sbjct: 86  VSC-VKLLLSKGADKTVKGPDGLTAFEA----TDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 74.7 bits (185), Expect = 1e-16
 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 11/110 (10%)

Query: 5   DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTP 62
           D VK+ +          +    G  PLH +   G LEI   LL    D+++ PD    TP
Sbjct: 21  DEVKDYVAKGEDVN---RTLEGGRKPLHYAADCGQLEILEFLLLKGADINA-PDKHHITP 76

Query: 63  LHWAAIKGRINIIDEILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVK 110
           L  A  +G ++ +  +LS   + A   ++   G T    T        ++
Sbjct: 77  LLSAVYEGHVSCVKLLLS---KGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 93.5 bits (232), Expect = 4e-21
 Identities = 32/216 (14%), Positives = 61/216 (28%), Gaps = 30/216 (13%)

Query: 1   MHVA------DIVKELLEARQEFAWK-KDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS 53
             +A       ++  L E              +    L+   GHL +   L +L P  ++
Sbjct: 132 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT 191

Query: 54  L-PDNEGRTPLHWAAI-KGRINIIDEILSL--NLQSAEM---RTIHGETVLHLTVKNNQY 106
                E      WAA+ +G  N+I+ +L     L  AE+             +    N+ 
Sbjct: 192 AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRL 251

Query: 107 EAVKYLMETLNITKLANMPDND----GNTILHLATAGKLTTMV--------IYLLKLGVD 154
           + +    +  N   + ++        G  +L          ++        I  +K    
Sbjct: 252 KEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP 311

Query: 155 VNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
              I       L +    A   G       L    +
Sbjct: 312 TATIPGDANELLRL----ALRLGNQGACALLLSIPS 343

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 91.2 bits (226), Expect = 2e-20
 Identities = 26/186 (13%), Positives = 60/186 (32%), Gaps = 9/186 (4%)

Query: 5   DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDL-SSLPDNEGRTPL 63
           D +  LL + +          +    L+   GHL +   L +L P    ++   E     
Sbjct: 109 DTLCLLLTSDEIVK-VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAF 167

Query: 64  HWAAIKGRINIIDEILSL--NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKL 121
             AA  G +++++ +  L     +A ++  +        V    +  + +L++   +   
Sbjct: 168 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY 227

Query: 122 ANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQI 181
           A + + +            +   V  L ++       N  G    D+V       G   +
Sbjct: 228 AEIHEFEY---GEKYVNPFIARHVNRLKEMHDAFKLSNPDGV--FDLVTKSECLQGFYML 282

Query: 182 VPALEE 187
              +  
Sbjct: 283 RNLIRR 288

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 90.0 bits (223), Expect = 6e-20
 Identities = 30/225 (13%), Positives = 56/225 (24%), Gaps = 51/225 (22%)

Query: 1   MHVA------DIVKELLEARQEFAWK-KDLNGHTPLHLSCS-KGHLEITRELLKLDPDLS 52
             +A       ++  L E     A        +     +   +GH  +   LL     L+
Sbjct: 167 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA 226

Query: 53  SLPDN---------------------EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTI 91
               +                     E       +   G  +++ +   L          
Sbjct: 227 YAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQ--------- 277

Query: 92  HGETVLHLTVKNNQ---YEAVKYLMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVI 146
            G  +L   ++ N     + +++L+    I  LA       D N +L LA          
Sbjct: 278 -GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACA 336

Query: 147 YLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGAR 191
            LL +   +       Y             G L +     E    
Sbjct: 337 LLLSIPSVLALTKANNYYI-------NETGGRLDLRAVALEHHHH 374

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 53.0 bits (127), Expect = 8e-08
 Identities = 24/167 (14%), Positives = 49/167 (29%), Gaps = 17/167 (10%)

Query: 51  LSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVK 110
           L    + E    L         N   + L  +     +++     V  +T  ++  + + 
Sbjct: 54  LPGTKNMEQVRQLL-CLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLC 112

Query: 111 YLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNA--INRKGYTALDV 168
            L   L   ++  +   +      LA       ++  L +L        I  + Y A  +
Sbjct: 113 LL---LTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRL 169

Query: 169 VESDASNSGALQIVPALEEAGARRCDQLPPMSPHDIQPIGDTSPISA 215
               A+ +G L ++  L E                IQ     +   A
Sbjct: 170 ----AAENGHLHVLNRLCELAPTEATA-------MIQAENYYAFRWA 205

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 87.0 bits (217), Expect = 4e-21
 Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 13/121 (10%)

Query: 18  AWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDE 77
                 +G+TPLH +   GH E  ++LL    D+++    +G TPLH AA  G   I+  
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA-RSKDGNTPLHLAAKNGHAEIVKL 60

Query: 78  ILSLNLQSA--EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM--PDNDGNTIL 133
           +L+   + A    R+  G T  HL  KN  +E VK L       K A++       +   
Sbjct: 61  LLA---KGADVNARSKDGNTPEHLAKKNGHHEIVKLL-----DAKGADVNARSWGSSHHH 112

Query: 134 H 134
           H
Sbjct: 113 H 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 67.0 bits (165), Expect = 6e-14
 Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 17/107 (15%)

Query: 2   HVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS 53
           H A      + VK+LL   A       +  +G+TPLHL+   GH EI + LL    D+++
Sbjct: 14  HNAAKNGHAEEVKKLLSKGADVN---ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70

Query: 54  LPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEM--RTIHGETVLH 98
               +G TP H A   G   I+  + +   + A++  R+       H
Sbjct: 71  -RSKDGNTPEHLAKKNGHHEIVKLLDA---KGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 66.6 bits (164), Expect = 7e-14
 Identities = 41/137 (29%), Positives = 51/137 (37%), Gaps = 45/137 (32%)

Query: 56  DNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET 115
             +G TPLH AA  G                           H        E VK L   
Sbjct: 6   SKDGNTPLHNAAKNG---------------------------HA-------EEVKKL--- 28

Query: 116 LNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDA 173
             ++K A  N    DGNT LHLA       +V  LL  G DVNA ++ G T   +    A
Sbjct: 29  --LSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHL----A 82

Query: 174 SNSGALQIVPALEEAGA 190
             +G  +IV  L+  GA
Sbjct: 83  KKNGHHEIVKLLDAKGA 99

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 51.2 bits (124), Expect = 2e-08
 Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 122 ANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQI 181
                 DGNT LH A        V  LL  G DVNA ++ G T L +    A+ +G  +I
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHL----AAKNGHAEI 57

Query: 182 VPALEEAGA 190
           V  L   GA
Sbjct: 58  VKLLLAKGA 66

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 82.4 bits (205), Expect = 3e-19
 Identities = 29/131 (22%), Positives = 48/131 (36%), Gaps = 13/131 (9%)

Query: 24  NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL 83
           +    L  +   G  +  R L+    D+++  D  G TPL+ A   G + I++ +L    
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNA-KDEYGLTPLYLATAHGHLEIVEVLLK--- 68

Query: 84  QSAEM--RTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAG 139
             A++      G T LHL       E  + L     +   A  N  D  G T   ++   
Sbjct: 69  NGADVNAVDAIGFTPLHLAAFIGHLEIAEVL-----LKHGADVNAQDKFGKTAFDISIGN 123

Query: 140 KLTTMVIYLLK 150
               +   L K
Sbjct: 124 GNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 74.0 bits (183), Expect = 3e-16
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 2/95 (2%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 79
            KD  G TPL+L+ + GHLEI   LLK   D+++  D  G TPLH AA  G + I  E+L
Sbjct: 42  AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA-VDAIGFTPLHLAAFIGHLEIA-EVL 99

Query: 80  SLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME 114
             +      +   G+T   +++ N   +  + L +
Sbjct: 100 LKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 60.9 bits (149), Expect = 1e-11
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 79
             D  G TPLHL+   GHLEI   LLK   D+++  D  G+T    +   G  ++ + + 
Sbjct: 75  AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ-DKFGKTAFDISIGNGNEDLAEILQ 133

Query: 80  SLN 82
            LN
Sbjct: 134 KLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 43.9 bits (105), Expect = 1e-05
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 127 NDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALE 186
           +D    L  A        V  L+  G DVNA +  G T L +    A+  G L+IV  L 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYL----ATAHGHLEIVEVLL 67

Query: 187 EAGA 190
           + GA
Sbjct: 68  KNGA 71

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 77.8 bits (193), Expect = 6e-18
 Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 6/93 (6%)

Query: 24  NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL 83
           NG TPLHL+   GHLE+ + LL+   D+++  D  GRTPLH AA  G + ++  +L    
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLE--- 56

Query: 84  QSA--EMRTIHGETVLHLTVKNNQYEAVKYLME 114
             A    +  +G T LHL  +N   E VK L+E
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 66.6 bits (164), Expect = 4e-14
 Identities = 39/101 (38%), Positives = 51/101 (50%), Gaps = 11/101 (10%)

Query: 92  HGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDNDGNTILHLATAGKLTTMVIYLL 149
           +G T LHL  +N   E VK L     +   A  N  D +G T LHLA       +V  LL
Sbjct: 1   NGRTPLHLAARNGHLEVVKLL-----LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55

Query: 150 KLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
           + G DVNA ++ G T L      A+ +G L++V  L EAGA
Sbjct: 56  EAGADVNAKDKNGRTPL----HLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 63.9 bits (157), Expect = 3e-13
 Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 7/77 (9%)

Query: 5  DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTP 62
          ++VK LLE  A       KD NG TPLHL+   GHLE+ + LL+   D+++  D  GRTP
Sbjct: 16 EVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTP 71

Query: 63 LHWAAIKGRINIIDEIL 79
          LH AA  G + ++ ++L
Sbjct: 72 LHLAARNGHLEVV-KLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 42.0 bits (100), Expect = 2e-05
 Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 5/44 (11%)

Query: 5  DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK 46
          ++VK LLE  A       KD NG TPLHL+   GHLE+ + LL+
Sbjct: 49 EVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLE 89

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 69.5 bits (171), Expect = 6e-15
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 14/112 (12%)

Query: 5   DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTP 62
                L+   +          +    L  +   G  +  R L+    D+++  D  G TP
Sbjct: 8   HHSSGLVPRGS------HMGSDLGKKLLEAARAGQDDEVRILMANGADVAA-KDKNGSTP 60

Query: 63  LHWAAIKGRINIIDEILSLNLQSAE--MRTIHGETVLHLTVKNNQYEAVKYL 112
           LH AA  G + ++  +L      A+   +   G+T   +++ N   +  + L
Sbjct: 61  LHLAARNGHLEVVKLLLE---AGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 63.7 bits (156), Expect = 7e-13
 Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 16/120 (13%)

Query: 33  CSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA--EMRT 90
            S  H   +  L+     +     ++    L  AA  G+ + +  +++     A    + 
Sbjct: 2   SSHHHHHHSSGLVPRGSHM----GSDLGKKLLEAARAGQDDEVRILMA---NGADVAAKD 54

Query: 91  IHGETVLHLTVKNNQYEAVKYLMETLNITKLAN--MPDNDGNTILHLATAGKLTTMVIYL 148
            +G T LHL  +N   E VK L     +   A+    D  G T   ++       +   L
Sbjct: 55  KNGSTPLHLAARNGHLEVVKLL-----LEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 56.4 bits (137), Expect = 3e-10
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 102 KNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK 161
            ++ +     L     + + ++M  +D    L  A        V  L+  G DV A ++ 
Sbjct: 3   SHHHHHHSSGL-----VPRGSHM-GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN 56

Query: 162 GYTALDVVESDASNSGALQIVPALEEAGA 190
           G T L      A+ +G L++V  L EAGA
Sbjct: 57  GSTPL----HLAARNGHLEVVKLLLEAGA 81

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 58.1 bits (140), Expect = 1e-09
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 4/101 (3%)

Query: 92  HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKL 151
             ET LHL V++    ++  +   +  +   +     G+T LH          +  LL+ 
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG 227

Query: 152 GVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARR 192
              +   N  G T LD+    A           L +A + R
Sbjct: 228 KASIEIANESGETPLDI----AKRLKHEHCEELLTQALSGR 264

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 3/96 (3%)

Query: 24  NGHTPLHLSCSKGHLEITR--ELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL 81
              T LHL+            + L  +         +G T LH+  +      + ++L  
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECL-KLLLR 226

Query: 82  NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 117
              S E+    GET L +  +       + L + L+
Sbjct: 227 GKASIEIANESGETPLDIAKRLKHEHCEELLTQALS 262

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIID 76
           K+   G T LH  C   + E  + LL+    +  + +  G TPL  A      +  +
Sbjct: 200 KQTGKGSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEE 255

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 2e-08
 Identities = 75/543 (13%), Positives = 153/543 (28%), Gaps = 176/543 (32%)

Query: 2   HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK---LDPDLSSLPDNE 58
              DI+    +A     +  + +        C K   ++ + +L    +D  +    D  
Sbjct: 17  QYKDILSVFEDA-----FVDNFD--------C-KDVQDMPKSILSKEEID-HIIMSKDAV 61

Query: 59  GRTP-LHWAAIKGRINI----IDEILSLN---LQSA---EMRTIHGETVLHLTVKNNQYE 107
             T  L W  +  +  +    ++E+L +N   L S    E R     T +++  ++  Y 
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121

Query: 108 AV----KY------LMETLNITKLANMPDNDGNTILH-LATAGKLTTMVIYLLKLGVDVN 156
                 KY          L    L  +     N ++  +  +GK T + + +        
Sbjct: 122 DNQVFAKYNVSRLQPYLKLR-QALLELRPAK-NVLIDGVLGSGK-TWVALDVCL---SYK 175

Query: 157 AINRKGYTA--LDVVESDASNSGALQIVPALEEAGARRCDQLPPMSPHDIQPIGDTSPIS 214
              +  +    L++   ++  +  L+++  L         Q+ P           TS   
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPET-VLEMLQKL-------LYQIDPN---------WTSRSD 218

Query: 215 AQSSIPRRAPRESPSRHHRRRNRRRREKQ---IELQTEGLRNARKTIIIVA------VLI 265
             S+I  R    S     RR  + +  +    +      L N +      A      +L+
Sbjct: 219 HSSNIKLRI--HSIQAELRRLLKSKPYENCLLV------LLNVQNAKAWNAFNLSCKILL 270

Query: 266 AT----VTFAAG---------INPPGGFNQVSGKSLVGKQTSFKVFM----VCNIVALFL 308
            T    VT              +          KSL+ K    +       V       L
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 309 SL---GIVIFLVSIIPFQRKSMMQLLVVTHRVMWLSVSFLAAAYIAAIW---TILPRGRG 362
           S+    I   L +   ++  +  +L      ++  S++ L  A    ++   ++ P    
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKL----TTIIESSLNVLEPAEYRKMFDRLSVFPPS-- 384

Query: 363 MVWVSAAVVSLGGGFTLAIFTGLGVLLARHWLRKWEWRKMKEK---------------NR 407
              +   +              L ++          W  + +                 +
Sbjct: 385 -AHIPTIL--------------LSLI----------WFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 408 SPNSSISRVEELRMMKKTS-------HES------SNSDLDSSDQG------------GY 442
            P  S   +  + +  K         H S           DS D              G+
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479

Query: 443 HLY 445
           HL 
Sbjct: 480 HLK 482

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 50.4 bits (120), Expect = 5e-07
 Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 14/102 (13%)

Query: 92  HGETVLHLTVKNNQYEAVKYLMETL-----NITKLANMPDNDGNTILHLATAGKLTTMVI 146
             E VLHL VK     ++  L++ +     ++    +    DGNT LH A        + 
Sbjct: 189 PEELVLHLAVKVANQASL-PLVDFIIQNGGHL----DAKAADGNTALHYAALYNQPDCLK 243

Query: 147 YLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEA 188
            LLK    V  +N  G TALD+    A      +    LE+A
Sbjct: 244 LLLKGRALVGTVNEAGETALDI----ARKKHHKECEELLEQA 281

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 47.3 bits (112), Expect = 5e-06
 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 25  GHTPLHLSCSKGH---LEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL 81
               LHL+    +   L +   +++    L +    +G T LH+AA+  + + + ++L  
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAK-AADGNTALHYAALYNQPDCL-KLLLK 247

Query: 82  NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME 114
                      GET L +  K +  E  + L +
Sbjct: 248 GRALVGTVNEAGETALDIARKKHHKECEELLEQ 280

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIID 76
            K  +G+T LH +      +  + LLK    + ++ +  G T L  A  K      +
Sbjct: 221 AKAADGNTALHYAALYNQPDCLKLLLKGRALVGTV-NEAGETALDIARKKHHKECEE 276

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 49.4 bits (117), Expect = 1e-06
 Identities = 39/220 (17%), Positives = 56/220 (25%), Gaps = 42/220 (19%)

Query: 13  ARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDL-SSLPDNEGRTPLHWAAIKGR 71
                       G      S     L    + L    D+       +  TPL  A     
Sbjct: 188 EPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAAN- 246

Query: 72  INIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNT 131
                     +L + E    +G  V                          N  D+ G  
Sbjct: 247 ----------SLLACEFLLQNGANV--------------------------NQADSAGRG 270

Query: 132 ILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGAR 191
            LH AT    T +    LK G D+ A + +G   L +    A  +    IV  L  A  R
Sbjct: 271 PLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTI----AMETANADIVTLLRLAKMR 326

Query: 192 RCDQLPPMSPHDIQPIGDTSPISAQSSIPRRAPRESPSRH 231
             +     +  +             S  P +  R S   H
Sbjct: 327 EAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSRRSHDLH 366

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 5/99 (5%)

Query: 22  DLNGHTPLHLSC---SKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEI 78
                  LHL+    ++  L +   +++    L +    +G T LH+AA+  + + +  +
Sbjct: 168 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK-AADGNTALHYAALYNQPDCLK-L 225

Query: 79  LSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 117
           L             GET L +  K +  E  + L +   
Sbjct: 226 LLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQA 264

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	445
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.97
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.97
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.97
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.97
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.97
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.96
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.96
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.96
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.96
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.96
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.96
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.96
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.96
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.96
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.95
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.95
2rfa_A	232	Transient receptor potential cation channel subfa	99.95
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.95
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.95
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.95
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.95
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.95
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.94
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.94
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.94
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.94
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.93
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.93
2etb_A	256	Transient receptor potential cation channel subfam	99.93
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.93
2pnn_A	273	Transient receptor potential cation channel subfa	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.91
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.91
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.91
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.91
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.9
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.9
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.9
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.88
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.88
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.88
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.87
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.86
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.86
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.86
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.86
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.84
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.84
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.83
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.83
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.83
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.82
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.81
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.81
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.81
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.81
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.81
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.8
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.8
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.78
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.75
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.74
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.65

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=4e-31  Score=232.23  Aligned_cols=157  Identities=31%  Similarity=0.463  Sum_probs=145.0

Q ss_pred             hHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCH
Q 013339           27 TPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQY  106 (445)
Q Consensus        27 TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~  106 (445)
                      ++|+.||+.|+.++|+.||+.|++++. +|.+|+||||+|+..|+.++++.|++.+ .+++.+|.+|+||||+|+.+|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~-~d~~g~t~l~~a~~~~~~~~~~~ll~~g-ad~~~~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNA-SDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNAKDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHhcc-cchhhhccCCCCHHHHHHHcCCH
Confidence            579999999999999999999999977 8999999999999999999999999998 57788999999999999999999


Q ss_pred             HHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHHHH
Q 013339          107 EAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALE  186 (445)
Q Consensus       107 ~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~  186 (445)
                      +++++|++.   +.++|.+|.+|+||||+|+..|+.+++++|+++|++++.+|.+|+|||++    +...++.+++++|+
T Consensus        84 ~~v~~Ll~~---gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~----A~~~g~~~iv~~Ll  156 (169)
T 4gpm_A           84 EVVKLLISK---GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDL----AREHGNEEVVKLLE  156 (169)
T ss_dssp             HHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH----HHHTTCHHHHHHHH
T ss_pred             HHHHHHHHC---cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH----HHHcCCHHHHHHHH
Confidence            999999998   78899999999999999999999999999999999999999999999999    55567889999999


Q ss_pred             HhcCcc
Q 013339          187 EAGARR  192 (445)
Q Consensus       187 ~~ga~~  192 (445)
                      ++|++.
T Consensus       157 ~~GA~i  162 (169)
T 4gpm_A          157 KQGGWL  162 (169)
T ss_dssp             TC----
T ss_pred             HCCCCc
Confidence            999874

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=5.6e-31  Score=237.06  Aligned_cols=181  Identities=23%  Similarity=0.313  Sum_probs=166.8

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |..++++.|++.++...+..|.+|+||||+|+..|+.++++.|+++|++++. +|..|.||||+|+..|+.+++++|++.
T Consensus        16 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~   94 (201)
T 3hra_A           16 RDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL-QNSISDSPYLYAGAQGRTEILAYMLKH   94 (201)
T ss_dssp             TCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            5678999999998855558899999999999999999999999999999976 899999999999999999999999988


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCc-----HHHHHHHHhcCCCcc
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKL-----TTMVIYLLKLGVDVN  156 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~-----~~iv~~Ll~~g~~~~  156 (445)
                      ++...+..+..|.||||+|+..|+.+++++|++..  ...++.+|.+|+||||+|+..+.     .+++++|++.|++++
T Consensus        95 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~  172 (201)
T 3hra_A           95 ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG--REDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS  172 (201)
T ss_dssp             SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHC--CCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred             cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence            77888899999999999999999999999999982  26789999999999999999887     999999999999999


Q ss_pred             ccccCCCCHHHHHhhhccccchhcHHHHHHHhc
Q 013339          157 AINRKGYTALDVVESDASNSGALQIVPALEEAG  189 (445)
Q Consensus       157 ~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~g  189 (445)
                      ..|..|.||+++    +...++.+++++|+++|
T Consensus       173 ~~~~~g~t~l~~----A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          173 IKDNSGRTAMDY----ANQKGYTEISKILAQYN  201 (201)
T ss_dssp             CCCTTSCCHHHH----HHHHTCHHHHHHHHTCC
T ss_pred             ccCCCCCCHHHH----HHHcCCHhHHHHHHhcC
Confidence            999999999999    55567889999998876

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.97  E-value=2.8e-31  Score=248.53  Aligned_cols=183  Identities=23%  Similarity=0.298  Sum_probs=156.9

Q ss_pred             HHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcC
Q 013339            3 VADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLN   82 (445)
Q Consensus         3 ~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~   82 (445)
                      ..++++.|++.+++++...|..|+||||+||..|+.++++.|+++|++++. +|..|+||||+|+..|+.+++++|++.+
T Consensus        35 ~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  113 (253)
T 1yyh_A           35 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI-QDNMGRTPLHAAVSADAQGVFQILIRNR  113 (253)
T ss_dssp             -----------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHST
T ss_pred             ChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            679999999999999888899999999999999999999999999999976 8999999999999999999999999999


Q ss_pred             CCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCC
Q 013339           83 LQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKG  162 (445)
Q Consensus        83 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G  162 (445)
                      +...+.++..|.||||+|+..|+.+++++|++.   +..++.+|.+|+||||+|+..++.+++++|++.|++++..|..|
T Consensus       114 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  190 (253)
T 1yyh_A          114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINS---HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE  190 (253)
T ss_dssp             TSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHT---TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCCccccCCCCCcHHHHHHHcChHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            778889999999999999999999999999997   77899999999999999999999999999999999999999999


Q ss_pred             CCHHHHHhhhccccchhcHHHHHHHhcCccc
Q 013339          163 YTALDVVESDASNSGALQIVPALEEAGARRC  193 (445)
Q Consensus       163 ~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~  193 (445)
                      .|||++    +...++.+++++|++.|++..
T Consensus       191 ~tpL~~----A~~~~~~~~v~~Ll~~ga~~~  217 (253)
T 1yyh_A          191 ETPLFL----AAREGSYETAKVLLDHFANRD  217 (253)
T ss_dssp             CCHHHH----HHHHTCHHHHHHHHHTTCCTT
T ss_pred             CCHHHH----HHHCCCHHHHHHHHHcCCCcc
Confidence            999999    455677889999999998753

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.97  E-value=9.5e-31  Score=247.73  Aligned_cols=184  Identities=24%  Similarity=0.249  Sum_probs=167.4

Q ss_pred             CHHHHHHHHHHhchh--hhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHH
Q 013339            2 HVADIVKELLEARQE--FAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL   79 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~--~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll   79 (445)
                      |+.++++.|++.+++  ..+..|..|+||||+||..|+.++++.|+++|++++. +|..|+||||+|+..|+.+++++|+
T Consensus        20 g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~g~tpL~~A~~~~~~~~v~~Ll   98 (282)
T 1oy3_D           20 QHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV-AERGGHTALHLACRVRAHTCACVLL   98 (282)
T ss_dssp             TCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-CCTTSCCHHHHHTTTTCHHHHHHHS
T ss_pred             CCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCcchhHhhh
Confidence            678999999998876  2458899999999999999999999999999999976 8999999999999999999999999


Q ss_pred             hcCCC----------------------------------------------ccccccccCcchHhHHHHcCCHHHHHHHH
Q 013339           80 SLNLQ----------------------------------------------SAEMRTIHGETVLHLTVKNNQYEAVKYLM  113 (445)
Q Consensus        80 ~~~~~----------------------------------------------~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll  113 (445)
                      +.++.                                              ..+..+..|.||||+|+..|+.+++++|+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  178 (282)
T 1oy3_D           99 QPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR  178 (282)
T ss_dssp             SSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHH
Confidence            97743                                              24556788999999999999999999999


Q ss_pred             HhcCcccccCCCCCC-CCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCcc
Q 013339          114 ETLNITKLANMPDND-GNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARR  192 (445)
Q Consensus       114 ~~~~~~~~~n~~d~~-g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~  192 (445)
                      ++   +..++.++.. |+||||+|+..++.+++++|+++|++++.+|..|.||||+    +...++.+++++|+++|++.
T Consensus       179 ~~---g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~----A~~~~~~~~v~~Ll~~ga~~  251 (282)
T 1oy3_D          179 DA---GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS----ALLRPNPILARLLRAHGAPE  251 (282)
T ss_dssp             HH---TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH----HHTSSCHHHHHHHHHTTCCC
T ss_pred             Hc---CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHH----HHHcCCcHHHHHHHHcCCCc
Confidence            98   7788888854 9999999999999999999999999999999999999999    55667889999999999986


Q ss_pred             c
Q 013339          193 C  193 (445)
Q Consensus       193 ~  193 (445)
                      .
T Consensus       252 ~  252 (282)
T 1oy3_D          252 P  252 (282)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=2.9e-31  Score=242.89  Aligned_cols=183  Identities=23%  Similarity=0.300  Sum_probs=165.0

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |+.|+++.|++.+++++...|.+|+||||+||..|+.++++.|+++|++++. +|..|+||||+|+..|+.+++++|++.
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~   80 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI-QDNMGRTPLHAAVSADAQGVFQILIRN   80 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            4677888999999998877899999999999999999999999999999876 899999999999999999999999999


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccC
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK  161 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~  161 (445)
                      ++...+..+..|.||||+|+..|+.+++++|++.   +..++.+|.+|+||||+|+..++.+++++|++.|++++..|..
T Consensus        81 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  157 (223)
T 2f8y_A           81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINS---HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR  157 (223)
T ss_dssp             TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT---TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHc---CCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Confidence            8778888899999999999999999999999987   6778899999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhhhccccchhcHHHHHHHhcCcc
Q 013339          162 GYTALDVVESDASNSGALQIVPALEEAGARR  192 (445)
Q Consensus       162 G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~  192 (445)
                      |.|||++|    ...++.+++++|++.|++.
T Consensus       158 g~t~L~~A----~~~~~~~~v~~Ll~~ga~~  184 (223)
T 2f8y_A          158 EETPLFLA----AREGSYETAKVLLDHFANR  184 (223)
T ss_dssp             CCCHHHHH----HHHTCHHHHHHHHHTTCCT
T ss_pred             CcCHHHHH----HHcCCHHHHHHHHHcCCCC
Confidence            99999994    4557788999999998764

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.97  E-value=3.2e-30  Score=237.29  Aligned_cols=182  Identities=29%  Similarity=0.352  Sum_probs=170.4

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |..|+++.+++.++......|..|.||||+|+..|+.++++.|+++|++++. +|..|+||||+|+..|+.+++++|++.
T Consensus        17 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~   95 (231)
T 3aji_A           17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGXDEIVKALLVK   95 (231)
T ss_dssp             TCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCC-cCCCCCCHHHHHHHcCHHHHHHHHHHc
Confidence            5689999999999998889999999999999999999999999999999876 899999999999999999999999999


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccC
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK  161 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~  161 (445)
                      + ...+.++..|.||||+|+..|+.+++++|++.   +..++.+|..|.||||+|+..++.+++++|++.|++++..|..
T Consensus        96 g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  171 (231)
T 3aji_A           96 G-AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG---GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTE  171 (231)
T ss_dssp             T-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTT
T ss_pred             C-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCC
Confidence            8 56778889999999999999999999999997   7778999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhhhccccchhcHHHHHHHhcCcc
Q 013339          162 GYTALDVVESDASNSGALQIVPALEEAGARR  192 (445)
Q Consensus       162 G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~  192 (445)
                      |.||||+    +...++.+++++|++.|++.
T Consensus       172 g~t~L~~----A~~~~~~~~v~~Ll~~ga~~  198 (231)
T 3aji_A          172 GNTPLHL----ACDEERVEEAKFLVTQGASI  198 (231)
T ss_dssp             SCCHHHH----HHHTTCHHHHHHHHHTTCCS
T ss_pred             CCCHHHH----HHHCCCHHHHHHHHHCCCCC
Confidence            9999999    45567789999999999864

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=2.8e-30  Score=236.30  Aligned_cols=184  Identities=22%  Similarity=0.230  Sum_probs=169.9

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |+.|+++.|++.+.+++ ..|..|.||||+|+..|+.++++.|++.++.....+|..|.||||+|+..|+.++++.|++.
T Consensus        36 g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  114 (223)
T 2f8y_A           36 SRSDAAKRLLEASADAN-IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS  114 (223)
T ss_dssp             TCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHc
Confidence            67899999999988876 77899999999999999999999999999844455899999999999999999999999998


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccC
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK  161 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~  161 (445)
                      + ..++..|..|.||||+|+..|+.+++++|+++   +..++.+|..|.||||+|+..++.+++++|+++|++++..|..
T Consensus       115 g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  190 (223)
T 2f8y_A          115 H-ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN---GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHM  190 (223)
T ss_dssp             T-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             C-CCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccc
Confidence            7 56778889999999999999999999999998   7789999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhhhccccchhcHHHHHHHhcCcccC
Q 013339          162 GYTALDVVESDASNSGALQIVPALEEAGARRCD  194 (445)
Q Consensus       162 G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~~  194 (445)
                      |.||+++    +...++.+++++|+++|+.+..
T Consensus       191 g~t~l~~----A~~~~~~~i~~~L~~~g~~~~~  219 (223)
T 2f8y_A          191 DRLPRDI----AQERMHHDIVRLLDEYNLVRSP  219 (223)
T ss_dssp             CCCHHHH----HHHTTCHHHHHHHHHTTCSSCC
T ss_pred             CCCHHHH----HHHhcchHHHHHHHHcCCCccc
Confidence            9999999    5566788999999999987654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.97  E-value=4e-30  Score=235.99  Aligned_cols=185  Identities=29%  Similarity=0.347  Sum_probs=169.8

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcC--CCCCCCCCCCCccHHHHHHHcCCHHHHHHHH
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLD--PDLSSLPDNEGRTPLHWAAIKGRINIIDEIL   79 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~--~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll   79 (445)
                      |..++++.|++.+++.....|..|+||||+|+..|+.++++.|++.|  +++....|..|+||||+|+..|+.++++.|+
T Consensus        13 g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll   92 (228)
T 2dzn_A           13 NEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY   92 (228)
T ss_dssp             TCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHH
T ss_pred             CCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            67899999999999988889999999999999999999999999999  5555547889999999999999999999999


Q ss_pred             hcC-CCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcC-CCccc
Q 013339           80 SLN-LQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG-VDVNA  157 (445)
Q Consensus        80 ~~~-~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g-~~~~~  157 (445)
                      +.+ +...+..+..|.||||+|+..|+.+++++|+++   +..++.+|.+|+||||+|+..++.+++++|++.| ++++.
T Consensus        93 ~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  169 (228)
T 2dzn_A           93 DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN---GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW  169 (228)
T ss_dssp             SSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCC
T ss_pred             hCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHc---CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccC
Confidence            987 356777888999999999999999999999998   7789999999999999999999999999999999 99999


Q ss_pred             cccCCCCHHHHHhhhccccchhcHHHHHH-HhcCccc
Q 013339          158 INRKGYTALDVVESDASNSGALQIVPALE-EAGARRC  193 (445)
Q Consensus       158 ~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~-~~ga~~~  193 (445)
                      .|..|.||||+    +...++.+++++|+ +.|++..
T Consensus       170 ~d~~g~t~L~~----A~~~~~~~~v~~Ll~~~ga~~~  202 (228)
T 2dzn_A          170 QDKQGWTPLFH----ALAEGHGDAAVLLVEKYGAEYD  202 (228)
T ss_dssp             CCTTSCCHHHH----HHHTTCHHHHHHHHHHHCCCSC
T ss_pred             cCCCCCCHHHH----HHHcCCHHHHHHHHHhcCCCCC
Confidence            99999999999    55567889999999 8888754

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.97  E-value=2.8e-30  Score=237.69  Aligned_cols=180  Identities=28%  Similarity=0.357  Sum_probs=167.8

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |+.++++.|++.+.+++ ..|..|+||||+|+..|+.+++++|+++|++++. +|..|.||||+|+..|+.+++++|++.
T Consensus        51 g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~  128 (231)
T 3aji_A           51 GHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA-VNQNGCTPLHYAASKNRHEIAVMLLEG  128 (231)
T ss_dssp             TCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CcHHHHHHHHHhCCCCC-CcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            56899999999988766 7888999999999999999999999999999976 899999999999999999999999998


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccC
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK  161 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~  161 (445)
                      + ...+.++..|.||||+|+..|+.+++++|++.   +..++.+|.+|+||||+|+..++.+++++|+++|++++.+|..
T Consensus       129 g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  204 (231)
T 3aji_A          129 G-ANPDAKDHYDATAMHRAAAKGNLKMVHILLFY---KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKE  204 (231)
T ss_dssp             T-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT
T ss_pred             C-CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc---CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
Confidence            8 56778889999999999999999999999997   7789999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhhhccccchhcHHHHHHHhcCc
Q 013339          162 GYTALDVVESDASNSGALQIVPALEEAGAR  191 (445)
Q Consensus       162 G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~  191 (445)
                      |.||+++    +...++.++.++|.++|++
T Consensus       205 g~t~l~~----A~~~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          205 EKTPLQV----AKGGLGLILKRLAEGEEAS  230 (231)
T ss_dssp             SCCHHHH----SCHHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHH----HHhhHHHHHHHHHcccccc
Confidence            9999999    6667788899999998764

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=7.3e-31  Score=242.76  Aligned_cols=188  Identities=26%  Similarity=0.325  Sum_probs=166.0

Q ss_pred             CHHHHHHHHHHhchh---hhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHH
Q 013339            2 HVADIVKELLEARQE---FAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEI   78 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~---~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~L   78 (445)
                      |+.++++.|++..+.   ..+..|..|+||||+|+..|+.+++++|+++|++++. +|..|+||||+|+..|+.++++.|
T Consensus        19 g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~L   97 (236)
T 1ikn_D           19 EEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL-RDFRGNTPLHLACEQGCLASVGVL   97 (236)
T ss_dssp             TCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCC-CCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             CChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHH
Confidence            345667777777654   3457889999999999999999999999999999976 899999999999999999999999


Q ss_pred             HhcCCC-----ccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCC-CCCcHHHHHHhCCcHHHHHHHHhcC
Q 013339           79 LSLNLQ-----SAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDN-DGNTILHLATAGKLTTMVIYLLKLG  152 (445)
Q Consensus        79 l~~~~~-----~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~-~g~T~LHlA~~~~~~~iv~~Ll~~g  152 (445)
                      ++.++.     .....+..|.||||+|+..|+.+++++|+++   +..++.+|. .|+||||+|+..++.+++++|+++|
T Consensus        98 l~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g  174 (236)
T 1ikn_D           98 TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL---GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG  174 (236)
T ss_dssp             HHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH---TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             HhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            998843     2567788899999999999999999999998   778899997 9999999999999999999999999


Q ss_pred             CCccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCcccCCCC
Q 013339          153 VDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQLP  197 (445)
Q Consensus       153 ~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~~~~~  197 (445)
                      ++++..|..|.||+++    +...++.+++++|+++|++.....+
T Consensus       175 a~~~~~~~~g~tpl~~----A~~~~~~~~~~~Ll~~ga~~~~~~~  215 (236)
T 1ikn_D          175 ADVNRVTYQGYSPYQL----TWGRPSTRIQQQLGQLTLENLQMLP  215 (236)
T ss_dssp             CCSCCCCTTCCCGGGG----CTTSSCHHHHHHHHTTSCGGGSSCC
T ss_pred             CCCCcccCCCCCHHHH----HHccCchHHHHHHHHcchhhhhcCC
Confidence            9999999999999999    7778899999999999998765443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=4.1e-30  Score=225.79  Aligned_cols=150  Identities=32%  Similarity=0.458  Sum_probs=137.8

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |+.|+|+.|++.+.+++ ..|.+|+||||+|+..|+.++++.|++.|++++. +|.+|+||||+|+..|+.++++.|+++
T Consensus        15 G~~~~v~~Ll~~Gadvn-~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~-~d~~g~TpLh~A~~~g~~~~v~~Ll~~   92 (169)
T 4gpm_A           15 GNKDRVKDLIENGADVN-ASDSDGRTPLHHAAENGHKEVVKLLISKGADVNA-KDSDGRTPLHHAAENGHKEVVKLLISK   92 (169)
T ss_dssp             TCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhh-hccCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            67899999999998876 7899999999999999999999999999999976 899999999999999999999999999


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccc
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNA  157 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~  157 (445)
                      + .+++.+|.+|+||||+|+.+|+.+++++|++.   +.+++.+|.+|+||||+|+..++.+++++|+++|++++.
T Consensus        93 g-advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~---gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A           93 G-ADVNAKDSDGRTPLHHAAENGHKEVVKLLISK---GADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             T-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred             c-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence            8 56788999999999999999999999999998   788999999999999999999999999999999999864

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.97  E-value=1e-29  Score=234.85  Aligned_cols=183  Identities=24%  Similarity=0.287  Sum_probs=170.7

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |+.|+++.|++.+.+++ ..|..|.||||+|+..|+.+++++|+++|+++.. +|..|.||||+|+..|+.+++++|++.
T Consensus        22 g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~   99 (237)
T 3b7b_A           22 GHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP-KDAEGSTCLHLAAKKGHYEVVQYLLSN   99 (237)
T ss_dssp             TCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCC-CCTTSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CcHHHHHHHHHcCCCcC-ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHhC
Confidence            57899999999988876 7788999999999999999999999999999876 899999999999999999999999999


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccC
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK  161 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~  161 (445)
                      ++...+..+..|.||||+|+..|+.+++++|++.   +..++.+|.+|+||||+|+..++.+++++|++.|++++..|..
T Consensus       100 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  176 (237)
T 3b7b_A          100 GQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK---GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIH  176 (237)
T ss_dssp             TCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTT
T ss_pred             CCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCC
Confidence            9888888999999999999999999999999997   7788999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhhhccccchhcHHHHHHHhcCccc
Q 013339          162 GYTALDVVESDASNSGALQIVPALEEAGARRC  193 (445)
Q Consensus       162 G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~  193 (445)
                      |.|||++|    ...++.+++++|++.|++..
T Consensus       177 g~t~L~~A----~~~~~~~~v~~Ll~~gad~~  204 (237)
T 3b7b_A          177 GDSPLHIA----ARENRYDCVVLFLSRDSDVT  204 (237)
T ss_dssp             CCCHHHHH----HHTTCHHHHHHHHTTTCCTT
T ss_pred             CCCHHHHH----HHhCCHhHHHHHHHcCCCCC
Confidence            99999994    45677889999999988643

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.97  E-value=2.1e-30  Score=245.18  Aligned_cols=159  Identities=25%  Similarity=0.377  Sum_probs=143.7

Q ss_pred             HHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCC
Q 013339            5 DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQ   84 (445)
Q Consensus         5 d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~   84 (445)
                      ++++.|++.+.+++ ..|.+|+||||+||..|+.++|++|++.++++.. ++.+|.||+|+|+..|+.++++.|++.+ .
T Consensus        67 ~~v~~Ll~~Gadvn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~g-~  143 (269)
T 4b93_B           67 KRLAKVPASGLGVN-VTSQDGSSPLHVAALHGRADLIPLLLKHGANAGA-RNADQAVPLHLACQQGHFQVVKCLLDSN-A  143 (269)
T ss_dssp             --------CCCCTT-CCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHTT-C
T ss_pred             HHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCc-cCCCCCCccccccccChHHHHHHHHHCC-C
Confidence            47788888888876 7899999999999999999999999999999976 8999999999999999999999999998 5


Q ss_pred             ccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCC
Q 013339           85 SAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYT  164 (445)
Q Consensus        85 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~T  164 (445)
                      .++.+|..|+||||+|+.+|+.+++++|++.   +.++|.+|.+|+||||+|+..|+.+++++|+++|++++.+|..|+|
T Consensus       144 ~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~---gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~T  220 (269)
T 4b93_B          144 KPNKKDLSGNTPLIYACSGGHHELVALLLQH---GASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRT  220 (269)
T ss_dssp             CSCCCCTTCCCHHHHHHHTTCGGGHHHHHHT---TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCC
T ss_pred             CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC---CCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCC
Confidence            6788899999999999999999999999998   7889999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 013339          165 ALDVV  169 (445)
Q Consensus       165 pl~~a  169 (445)
                      |||+|
T Consensus       221 pL~~A  225 (269)
T 4b93_B          221 AVDCA  225 (269)
T ss_dssp             SGGGS
T ss_pred             HHHHH
Confidence            99995

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=9.4e-30  Score=227.79  Aligned_cols=166  Identities=26%  Similarity=0.332  Sum_probs=154.3

Q ss_pred             hhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCc
Q 013339           15 QEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGE   94 (445)
Q Consensus        15 ~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~   94 (445)
                      +.+.+.+|..|+||||+||..|+.++++.|++.+++++. +|..|+||||+|+..|+.+++++|++.+ ..++.+|..|.
T Consensus        25 ~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~  102 (192)
T 2rfm_A           25 DFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLED-KDIEGSTALIWAVKNNRLGIAEKLLSKG-SNVNTKDFSGK  102 (192)
T ss_dssp             HHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTSC
T ss_pred             HHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccccc-ccccCccHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCC
Confidence            344567899999999999999999999999999999876 8999999999999999999999999998 56778899999


Q ss_pred             chHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhcc
Q 013339           95 TVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDAS  174 (445)
Q Consensus        95 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~  174 (445)
                      ||||+|+..|+.+++++|++.   +..++.+|.+|+||||+|+..++.+++++|+++|++++.+|..|.||+++    +.
T Consensus       103 t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~----A~  175 (192)
T 2rfm_A          103 TPLMWSIIFGYSEMSYFLLEH---GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEAS----AR  175 (192)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHT---TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHH----HH
T ss_pred             cHHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH----HH
Confidence            999999999999999999998   77899999999999999999999999999999999999999999999999    55


Q ss_pred             ccchhcHHHHHHHhc
Q 013339          175 NSGALQIVPALEEAG  189 (445)
Q Consensus       175 ~~~~~~i~~~L~~~g  189 (445)
                      ..++.+++++|++.|
T Consensus       176 ~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          176 IFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HhCcHHHHHHHHhcc
Confidence            667889999999875

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.97  E-value=9.3e-30  Score=238.14  Aligned_cols=179  Identities=22%  Similarity=0.224  Sum_probs=164.4

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |+.|+++.|++.+.+++ ..|..|+||||+|+..|+.+++++|++.++.....+|..|.||||+|+..|+.++++.|++.
T Consensus        68 g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  146 (253)
T 1yyh_A           68 SRSDAAKRLLEASADAN-IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS  146 (253)
T ss_dssp             TCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHc
Confidence            67899999999998876 77899999999999999999999999999844445899999999999999999999999998


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccC
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK  161 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~  161 (445)
                      + ..++.+|..|+||||+|+..|+.+++++|++.   +..++.+|.+|+||||+|+..++.+++++|+++|++++.+|..
T Consensus       147 g-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~  222 (253)
T 1yyh_A          147 H-ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN---GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHM  222 (253)
T ss_dssp             T-CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             C-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccC
Confidence            8 56788899999999999999999999999998   7789999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhhhccccchhcHHHHHHHhc
Q 013339          162 GYTALDVVESDASNSGALQIVPALEEAG  189 (445)
Q Consensus       162 G~Tpl~~a~~~a~~~~~~~i~~~L~~~g  189 (445)
                      |.||+++    +...++.+++++|....
T Consensus       223 g~tpl~~----A~~~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          223 DRLPRDI----AQERMHHDIVRLLDLEH  246 (253)
T ss_dssp             CCCHHHH----HHHTTCHHHHHHHHC--
T ss_pred             CCCHHHH----HHHcCCHHHHHHHHHHh
Confidence            9999999    66778889999997543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.96  E-value=4.6e-29  Score=230.72  Aligned_cols=184  Identities=26%  Similarity=0.277  Sum_probs=165.9

Q ss_pred             CHHHHHHHHHHh---chhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHH
Q 013339            2 HVADIVKELLEA---RQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEI   78 (445)
Q Consensus         2 ~~~d~v~~Ll~~---~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~L   78 (445)
                      |+.|+++.|++.   .....+..|..|.||||+|+..|+.+++++|++.|++++. +|..|.||||+|+..|+.++++.|
T Consensus        20 g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~L   98 (241)
T 1k1a_A           20 GNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMA-LDRHGQTAAHLACEHRSPTCLRAL   98 (241)
T ss_dssp             TCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cCCCCCCHHHHHHHcCCHHHHHHH
Confidence            678999999983   3333347889999999999999999999999999999876 799999999999999999999999


Q ss_pred             HhcCCC---ccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCC-CCCCcHHHHHHhCCcHHHHHHHHhcCCC
Q 013339           79 LSLNLQ---SAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPD-NDGNTILHLATAGKLTTMVIYLLKLGVD  154 (445)
Q Consensus        79 l~~~~~---~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d-~~g~T~LHlA~~~~~~~iv~~Ll~~g~~  154 (445)
                      ++.++.   ..+..+..|.||||+|+..|+.+++++|++.   +..++..| ..|.||||+|+..++.+++++|++.|++
T Consensus        99 l~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  175 (241)
T 1k1a_A           99 LDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER---GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN  175 (241)
T ss_dssp             HHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHc---CCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999853   5677888999999999999999999999998   67788888 8899999999999999999999999999


Q ss_pred             ccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCccc
Q 013339          155 VNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRC  193 (445)
Q Consensus       155 ~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~  193 (445)
                      ++..|..|.||||+|    ...++.+++++|++.|++..
T Consensus       176 ~~~~~~~g~t~L~~A----~~~~~~~~v~~Ll~~ga~~~  210 (241)
T 1k1a_A          176 VNAQMYSGSSALHSA----SGRGLLPLVRTLVRSGADSS  210 (241)
T ss_dssp             TTCBCTTSCBHHHHH----HHHTCHHHHHHHHHTTCCTT
T ss_pred             CCCcCCCCCCHHHHH----HHcCCHHHHHHHHhcCCCCC
Confidence            999999999999994    55677889999999998754

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.96  E-value=3.3e-30  Score=241.31  Aligned_cols=184  Identities=22%  Similarity=0.287  Sum_probs=160.7

Q ss_pred             HHHHHHHhchhhhc---CCCCCCChHHHHHHHc---CCHHHHHHHhhcCCCCCCC----------CCCCCccHHHHHHHc
Q 013339            6 IVKELLEARQEFAW---KKDLNGHTPLHLSCSK---GHLEITRELLKLDPDLSSL----------PDNEGRTPLHWAAIK   69 (445)
Q Consensus         6 ~v~~Ll~~~~~~~~---~~d~~G~TpLH~Aa~~---g~~~iv~~LL~~~~~~~~~----------~d~~G~TpLh~Aa~~   69 (445)
                      +++.|++.+.+++.   ..|..|+||||+|+..   |+.++++.|++.|++....          +|..|.||||+|+..
T Consensus        21 ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~  100 (256)
T 2etb_A           21 LLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEK  100 (256)
T ss_dssp             HHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHT
T ss_pred             HHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHc
Confidence            66777778877764   3799999999999999   9999999999998776532          347899999999999


Q ss_pred             CCHHHHHHHHhcCCCcccccccc-------------CcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHH
Q 013339           70 GRINIIDEILSLNLQSAEMRTIH-------------GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLA  136 (445)
Q Consensus        70 G~~~iv~~Ll~~~~~~~~~~~~~-------------g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA  136 (445)
                      |+.++++.|++.+ ..++.++..             |+||||+|+..|+.+++++|++....+.++|.+|.+|+||||+|
T Consensus       101 g~~~~v~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A  179 (256)
T 2etb_A          101 RSLQCVKLLVENG-ADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHAL  179 (256)
T ss_dssp             TCHHHHHHHHHTT-CCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHH
T ss_pred             CCHHHHHHHHHcC-CCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHH
Confidence            9999999999998 456666665             99999999999999999999993223788999999999999999


Q ss_pred             Hh--CCcHH-------HHHHHHhcCCCc-------cccccCCCCHHHHHhhhccccchhcHHHHHHHhcCcccC
Q 013339          137 TA--GKLTT-------MVIYLLKLGVDV-------NAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCD  194 (445)
Q Consensus       137 ~~--~~~~~-------iv~~Ll~~g~~~-------~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~~  194 (445)
                      +.  .++.+       ++++|++.|+++       +.+|..|.||||+    |...++.+++++|+++|+....
T Consensus       180 ~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~----A~~~g~~~~v~~Ll~~g~~~~~  249 (256)
T 2etb_A          180 VMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKL----AAKEGKIEIFRHILQREFSGAA  249 (256)
T ss_dssp             HHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHH----HHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHH----HHHhCCHHHHHHHHhCCCCCCC
Confidence            98  88888       999999999999       9999999999999    5566788999999999987543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.96  E-value=1.2e-28  Score=226.21  Aligned_cols=174  Identities=26%  Similarity=0.338  Sum_probs=157.6

Q ss_pred             CHHHHHHHHHHhc--hhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcC--CCCCCCCCCCCccHHHHHHHcCCHHHHHH
Q 013339            2 HVADIVKELLEAR--QEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLD--PDLSSLPDNEGRTPLHWAAIKGRINIIDE   77 (445)
Q Consensus         2 ~~~d~v~~Ll~~~--~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~--~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~   77 (445)
                      ++.|+++.|++.+  +++....|..|+||||+|+..|+.++++.|+++|  ++++. +|..|.||||+|+..|+.+++++
T Consensus        47 ~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~  125 (228)
T 2dzn_A           47 QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNK-ITNQGVTCLHLAVGKKWFEVSQF  125 (228)
T ss_dssp             TCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTC-CCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccc-CCcCCCCHHHHHHHcCCHhHHHH
Confidence            5789999999999  5666558899999999999999999999999998  77765 79999999999999999999999


Q ss_pred             HHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcc-cccCCCCCCCCcHHHHHHhCCcHHHHHHHH-hcCCCc
Q 013339           78 ILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNIT-KLANMPDNDGNTILHLATAGKLTTMVIYLL-KLGVDV  155 (445)
Q Consensus        78 Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll-~~g~~~  155 (445)
                      |++.+ ...+.+|..|+||||+|+..|+.+++++|++.   + ..+|.+|.+|+||||+|+..++.+++++|+ +.|+++
T Consensus       126 Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~  201 (228)
T 2dzn_A          126 LIENG-ASVRIKDKFNQIPLHRAASVGSLKLIELLCGL---GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY  201 (228)
T ss_dssp             HHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTT---TCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCS
T ss_pred             HHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHhc---CcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCC
Confidence            99997 66788899999999999999999999999987   5 678999999999999999999999999999 999999


Q ss_pred             cccccCCCCHHHHHhhhccccchhcHHHHHHH
Q 013339          156 NAINRKGYTALDVVESDASNSGALQIVPALEE  187 (445)
Q Consensus       156 ~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~  187 (445)
                      +.+|..|.||+++|    ...   ++.++|++
T Consensus       202 ~~~~~~g~t~l~~A----~~~---~~~~~l~~  226 (228)
T 2dzn_A          202 DLVDNKGAKAEDVA----LNE---QVKKFFLN  226 (228)
T ss_dssp             CCBCTTSCBGGGGC----SST---THHHHHHT
T ss_pred             CccCCCCCcHHHHH----HHH---HHHHHHHh
Confidence            99999999999994    333   46666654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=7.1e-29  Score=216.85  Aligned_cols=161  Identities=24%  Similarity=0.328  Sum_probs=150.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHc
Q 013339           24 NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKN  103 (445)
Q Consensus        24 ~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~  103 (445)
                      .|.||||.|+..|+.++++.|++.+++++. +|..|+||||+|+..|+.+++++|++.+ ..++..+..|.||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINH-TDEEGFTPLMWAAAHGQIAVVEFLLQNG-ADPQLLGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCC-CCCCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHc
Confidence            589999999999999999999999998866 8999999999999999999999999997 56778899999999999999


Q ss_pred             CCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHH
Q 013339          104 NQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVP  183 (445)
Q Consensus       104 g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~  183 (445)
                      |+.+++++|++.   +..++.+|.+|+||||+|+..++.+++++|+++|++++..|..|.||+++    +...++.++++
T Consensus        80 ~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~----A~~~~~~~~~~  152 (167)
T 3v31_A           80 GYTDIVKMLLDC---GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDL----AVALGYRSVQQ  152 (167)
T ss_dssp             TCHHHHHHHHHH---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH----HHHHTCHHHHH
T ss_pred             CCHHHHHHHHHC---CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH----HHHcCcHHHHH
Confidence            999999999998   77899999999999999999999999999999999999999999999999    55567888999


Q ss_pred             HHHHhcCccc
Q 013339          184 ALEEAGARRC  193 (445)
Q Consensus       184 ~L~~~ga~~~  193 (445)
                      +|++++++..
T Consensus       153 ~L~~~~~~~~  162 (167)
T 3v31_A          153 VIESHLLKLL  162 (167)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            9999887654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.96  E-value=1.1e-28  Score=235.29  Aligned_cols=180  Identities=20%  Similarity=0.224  Sum_probs=163.2

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |+.++++.|++.+.+++ ..|.+|+||||+||..|+.++++.|+++|++++. +|.+|.||||+|+..|+.++++.|++.
T Consensus        70 g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~  147 (285)
T 3d9h_A           70 GHQLSLRNLISQGWAVN-IITADHVSPLHEACLGGHLSCVKILLKHGAQVNG-VTADWHTPLFNACVSGSWDCVNLLLQH  147 (285)
T ss_dssp             TCHHHHHHHHHTTCCSC-EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSC-CCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCHHHHHHHHHHC
Confidence            67899999999988866 7788999999999999999999999999999876 899999999999999999999999999


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccC
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK  161 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~  161 (445)
                      +... +. +.+|.||||+|+..|+.+++++|++.   +..++.+|.+|+||||+|+..++.+++++|++.|++++. |..
T Consensus       148 g~~~-~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~  221 (285)
T 3d9h_A          148 GASV-QP-ESDLASPIHEAARRGHVECVNSLIAY---GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKG  221 (285)
T ss_dssp             TCCS-SC-SCTTSCHHHHHHHHTCHHHHHHHHHT---TCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBT
T ss_pred             CCCC-CC-CCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCC
Confidence            8543 32 34599999999999999999999998   678899999999999999999999999999999999995 899


Q ss_pred             CCCHHHHHhhhccccchhcHHHHHHHhcCccc
Q 013339          162 GYTALDVVESDASNSGALQIVPALEEAGARRC  193 (445)
Q Consensus       162 G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~  193 (445)
                      |.|||++    +...++.+++++|++.|++..
T Consensus       222 g~t~L~~----A~~~~~~~~v~~Ll~~gad~~  249 (285)
T 3d9h_A          222 QDSPLHA----VVRTASEELACLLMDFGADTQ  249 (285)
T ss_dssp             TBCHHHH----HHHTTCHHHHHHHHHTTCCTT
T ss_pred             CCCHHHH----HHHcCCHHHHHHHHHCCCCCC
Confidence            9999999    455677899999999998753

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.96  E-value=5.3e-29  Score=230.28  Aligned_cols=179  Identities=25%  Similarity=0.292  Sum_probs=159.6

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCC----CCCCCCCCCCccHHHHHHHcCCHHHHHH
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDP----DLSSLPDNEGRTPLHWAAIKGRINIIDE   77 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~----~~~~~~d~~G~TpLh~Aa~~G~~~iv~~   77 (445)
                      ++.|+++.|++.+.++. ..|..|.||||+|+..|+.++++.|++.++    ++.. .|..|.||||+|+..|+.++++.
T Consensus        57 ~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~  134 (241)
T 1k1a_A           57 TLPSVVRLLVTAGASPM-ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEA-RNYDGLTALHVAVNTECQETVQL  134 (241)
T ss_dssp             TCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTC-CCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             CCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccc-cCcCCCcHHHHHHHcCCHHHHHH
Confidence            57899999999998876 678899999999999999999999999987    5544 78999999999999999999999


Q ss_pred             HHhcCCCcccccc-ccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCcc
Q 013339           78 ILSLNLQSAEMRT-IHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVN  156 (445)
Q Consensus        78 Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~  156 (445)
                      |++.+. ..+..+ ..|.||||+|+.+|+.+++++|+++   +..++.+|.+|+||||+|+..++.+++++|+++|++++
T Consensus       135 Ll~~g~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  210 (241)
T 1k1a_A          135 LLERGA-DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH---GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS  210 (241)
T ss_dssp             HHHTTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             HHHcCC-CcccccccCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC
Confidence            999985 455555 7899999999999999999999998   77899999999999999999999999999999999999


Q ss_pred             ccccCCCCHHHHHhhhccccchhcHHHHHHHhcC
Q 013339          157 AINRKGYTALDVVESDASNSGALQIVPALEEAGA  190 (445)
Q Consensus       157 ~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga  190 (445)
                      .+|..|.||+++    +...++.++++.|.+.++
T Consensus       211 ~~~~~g~tpl~~----A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          211 LKNCHNDTPLMV----ARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             CCCTTSCCTTTT----CSSHHHHHHHTC------
T ss_pred             CcCCCCCCHHHH----HHhcCcHHHHhhhccCCC
Confidence            999999999999    777888889988876543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.96  E-value=6.8e-29  Score=244.65  Aligned_cols=185  Identities=22%  Similarity=0.313  Sum_probs=144.1

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCC---------------------------
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSL---------------------------   54 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~---------------------------   54 (445)
                      |+.++|+.|++.+.+++ ..|..|+||||+||..|+.++|++|+++|++....                           
T Consensus        31 g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~  109 (364)
T 3ljn_A           31 GQTDEVRRLIETGVSPT-IQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKE  109 (364)
T ss_dssp             TCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCcc-ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccc
Confidence            56789999999887765 77888999999999999999999999888755430                           


Q ss_pred             ------------------------CCCCCccHHHHHHHcC--CHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHH
Q 013339           55 ------------------------PDNEGRTPLHWAAIKG--RINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEA  108 (445)
Q Consensus        55 ------------------------~d~~G~TpLh~Aa~~G--~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~  108 (445)
                                              +|..|.||||+|+..|  +.+++++|++.+ ..++.+|..|+||||+|+.+|+.++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~g-a~~~~~d~~g~t~L~~A~~~g~~~~  188 (364)
T 3ljn_A          110 RGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLG-ASPTAKDKADETPLMRAMEFRNREA  188 (364)
T ss_dssp             HTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             cCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCCHHH
Confidence                                    3446777777777777  777777777776 4566677778888888888888888


Q ss_pred             HHHHHHhcCc--ccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHHHH
Q 013339          109 VKYLMETLNI--TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALE  186 (445)
Q Consensus       109 v~~Ll~~~~~--~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~  186 (445)
                      +++|++....  +..+|.+|..|+||||+|+..++.+++++|+++|++++..|..|.|||++    +...++.+++++|+
T Consensus       189 v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~----A~~~g~~~~v~~Ll  264 (364)
T 3ljn_A          189 LDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYL----SVRAAMVLLTKELL  264 (364)
T ss_dssp             HHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHH----HHHTCCHHHHHHHH
T ss_pred             HHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH----HHHhChHHHHHHHH
Confidence            8888876211  11277888888888888888888888888888888888888888888888    44557788888888


Q ss_pred             HhcCcc
Q 013339          187 EAGARR  192 (445)
Q Consensus       187 ~~ga~~  192 (445)
                      +.|+..
T Consensus       265 ~~~~~~  270 (364)
T 3ljn_A          265 QKTDVF  270 (364)
T ss_dssp             HHSCHH
T ss_pred             HcCCch
Confidence            888764

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.96  E-value=4.4e-29  Score=236.05  Aligned_cols=183  Identities=28%  Similarity=0.318  Sum_probs=141.1

Q ss_pred             CHHHHHHHHHHhchhh-------hcCCCCCCChHHHHHHHcCCH-HHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHH
Q 013339            2 HVADIVKELLEARQEF-------AWKKDLNGHTPLHLSCSKGHL-EITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRIN   73 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~-------~~~~d~~G~TpLH~Aa~~g~~-~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~   73 (445)
                      |+.|+|+.||+.+.+.       ....|..|.||||+|+..++. ++++.|++.|++++. +|.+|+||||+|+..|+.+
T Consensus        22 G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~-~d~~G~TpLh~A~~~g~~~  100 (269)
T 4b93_B           22 GDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNV-TSQDGSSPLHVAALHGRAD  100 (269)
T ss_dssp             TCHHHHHHHHTCC----------------------------------------CCCCTTC-CCTTSCCHHHHHHHTTCTT
T ss_pred             CCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHcCcHH
Confidence            6789999999987653       235677899999999998876 488999999999976 8999999999999999999


Q ss_pred             HHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCC
Q 013339           74 IIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGV  153 (445)
Q Consensus        74 iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~  153 (445)
                      ++++|++.+ .....++.+|.||+|.|+..++.+++++|++.   +..+|.+|.+|+||||+|+..|+.+++++|+++|+
T Consensus       101 ~v~~Ll~~~-a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~---g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga  176 (269)
T 4b93_B          101 LIPLLLKHG-ANAGARNADQAVPLHLACQQGHFQVVKCLLDS---NAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGA  176 (269)
T ss_dssp             HHHHHHHTT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT---TCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTC
T ss_pred             HHHHHHhcC-CCcCccCCCCCCccccccccChHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCC
Confidence            999999998 56778889999999999999999999999998   77899999999999999999999999999999999


Q ss_pred             CccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCccc
Q 013339          154 DVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRC  193 (445)
Q Consensus       154 ~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~  193 (445)
                      ++|..|..|.||||+    |...++.+++++|++.|++..
T Consensus       177 dvn~~~~~g~t~Lh~----A~~~g~~~~v~~Ll~~Gad~~  212 (269)
T 4b93_B          177 SINASNNKGNTALHE----AVIEKHVFVVELLLLHGASVQ  212 (269)
T ss_dssp             CTTCBCTTSCBHHHH----HHHTTCHHHHHHHHHTTCCSC
T ss_pred             CCCccccCCCcHHHH----HHHcCCHHHHHHHHHCCCCCC
Confidence            999999999999999    556678899999999998754

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.96  E-value=2.1e-28  Score=225.93  Aligned_cols=164  Identities=25%  Similarity=0.343  Sum_probs=151.4

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      ++.|+++.|++.+.++. ..|..|.||||+|+..|+.+++++|++.++......|..|.||||+|+..|+.+++++|++.
T Consensus        55 ~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  133 (237)
T 3b7b_A           55 NHLEAVKYLIKAGALVD-PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK  133 (237)
T ss_dssp             TCHHHHHHHHTTTCCCC-CCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHhCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            57899999999987765 77889999999999999999999999999433344899999999999999999999999998


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccC
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK  161 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~  161 (445)
                      + ..++.++..|.||||+|+..|+.+++++|++.   +..++.+|..|.||||+|+..++.+++++|+++|++++.+|..
T Consensus       134 g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~  209 (237)
T 3b7b_A          134 G-SDINIRDNEENICLHWAAFSGCVDIAEILLAA---KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKE  209 (237)
T ss_dssp             T-CCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTT
T ss_pred             C-CCCCccCCCCCCHHHHHHHCCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCC
Confidence            8 56778889999999999999999999999988   7789999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHh
Q 013339          162 GYTALDVVE  170 (445)
Q Consensus       162 G~Tpl~~a~  170 (445)
                      |.||+++|.
T Consensus       210 g~t~l~~A~  218 (237)
T 3b7b_A          210 GETPLQCAS  218 (237)
T ss_dssp             SCCHHHHSC
T ss_pred             CCCHHHHHH
Confidence            999999943

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.96  E-value=2.1e-28  Score=233.99  Aligned_cols=185  Identities=24%  Similarity=0.333  Sum_probs=160.1

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |+.++++.|++.+.+++ ..|..|.||||+||..|+.+++++|+++|++++. +|..|+||||+|+..|+.+++++|+++
T Consensus        51 g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~g~tpL~~A~~~g~~~~v~~Ll~~  128 (299)
T 1s70_B           51 GDTEEVLRLLERGADIN-YANVDGLTALHQACIDDNVDMVKFLVENGANINQ-PDNEGWIPLHAAASCGYLDIAEYLISQ  128 (299)
T ss_dssp             TCHHHHHHHHHHCCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHhC
Confidence            57899999999998876 6788999999999999999999999999999976 899999999999999999999999999


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcc------------------------cccCCCCCCCCcHHHHHH
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNIT------------------------KLANMPDNDGNTILHLAT  137 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~------------------------~~~n~~d~~g~T~LHlA~  137 (445)
                      + ...+..+..|.||||+|+..++.+++++++......                        ......+..|.||||+|+
T Consensus       129 g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~  207 (299)
T 1s70_B          129 G-AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAA  207 (299)
T ss_dssp             T-CCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHH
T ss_pred             C-CCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHH
Confidence            8 567778889999999999999999988877642211                        112345678999999999


Q ss_pred             hCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCccc
Q 013339          138 AGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRC  193 (445)
Q Consensus       138 ~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~  193 (445)
                      ..++.+++++|++.|++++..|..|.||||+    +...++.+++++|++.|++..
T Consensus       208 ~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~----A~~~~~~~~v~~Ll~~gad~~  259 (299)
T 1s70_B          208 AKGYTEVLKLLIQARYDVNIKDYDGWTPLHA----AAHWGKEEACRILVENLCDME  259 (299)
T ss_dssp             HHTCHHHHHHHHTTTCCTTCCCTTCCCHHHH----HHHTTCHHHHHHHHHTTCCTT
T ss_pred             HCCcHHHHHHHHHcCCCCCCcCCCCCcHHHH----HHhcCCHHHHHHHHHcCCCCC
Confidence            9999999999999999999999999999999    455677889999999998754

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=4.8e-28  Score=228.88  Aligned_cols=183  Identities=23%  Similarity=0.248  Sum_probs=112.2

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      ++.|+++.|++.+.++. ..|..|.||||+|+..|+.+++++|+++|++++. +|..|.||||+|+..|+.+++++|++.
T Consensus        50 g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~  127 (285)
T 1wdy_A           50 SREDIVELLLRHGADPV-LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE-CDFYGFTAFMEAAVYGKVKALKFLYKR  127 (285)
T ss_dssp             TCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-BCTTCCBHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCcccCCHHHHHHHhCCHHHHHHHHHh
Confidence            34555555555554443 4455555555555555555555555555555543 455555555555555555555555554


Q ss_pred             C-------------------------------------------CCccccccccCcchHhHHHHcCC----HHHHHHHHH
Q 013339           82 N-------------------------------------------LQSAEMRTIHGETVLHLTVKNNQ----YEAVKYLME  114 (445)
Q Consensus        82 ~-------------------------------------------~~~~~~~~~~g~t~Lh~A~~~g~----~~~v~~Ll~  114 (445)
                      +                                           +...+..|..|+||||.|+..++    .+++++|++
T Consensus       128 g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~  207 (285)
T 1wdy_A          128 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD  207 (285)
T ss_dssp             TCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH
T ss_pred             CCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHH
Confidence            4                                           23344444445555555555444    445555544


Q ss_pred             hcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHh-cCCCccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCccc
Q 013339          115 TLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLK-LGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRC  193 (445)
Q Consensus       115 ~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~-~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~  193 (445)
                      .   +..++.+|.+|+||||+|+..++.+++++|++ .|++++..|..|.||+++    +...++.+++++|+++|++..
T Consensus       208 ~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~----A~~~~~~~i~~~Ll~~Ga~~~  280 (285)
T 1wdy_A          208 H---GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL----AVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             T---TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHH----HHHTTCHHHHHHHHHHSSCSC
T ss_pred             c---CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHH----HHHcCcHHHHHHHHHcCCCCC
Confidence            4   45567777778888888888888888888886 788888888888888888    444566778888888887653

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=1.8e-28  Score=214.91  Aligned_cols=161  Identities=29%  Similarity=0.361  Sum_probs=146.8

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhH
Q 013339           20 KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHL   99 (445)
Q Consensus        20 ~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~   99 (445)
                      .....+.||||.||..|+.++++.|+++|++++. +|..|.||||+|+..|+.+++++|++.+ ...+..|..|.||||+
T Consensus         9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~   86 (169)
T 2y1l_E            9 HHGSDLGKKLLEAARAGRDDEVRILMANGADVNA-EDASGWTPLHLAAFNGHLEIVEVLLKNG-ADVNAVDHAGMTPLRL   86 (169)
T ss_dssp             ----CHHHHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHH
T ss_pred             cCCCcccchHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHH
Confidence            3456688999999999999999999999999976 8999999999999999999999999997 5677888999999999


Q ss_pred             HHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchh
Q 013339          100 TVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGAL  179 (445)
Q Consensus       100 A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~  179 (445)
                      |+..|+.+++++|+++   +..++.+|.+|+||||+|+..++.+++++|+++|++++..|..|.||+++    +...++.
T Consensus        87 A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~----A~~~~~~  159 (169)
T 2y1l_E           87 AALFGHLEIVEVLLKN---GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDI----SIDNGNE  159 (169)
T ss_dssp             HHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH----HHHTTCH
T ss_pred             HHHcCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH----HHHhCCH
Confidence            9999999999999998   77889999999999999999999999999999999999999999999999    5556788


Q ss_pred             cHHHHHHHhc
Q 013339          180 QIVPALEEAG  189 (445)
Q Consensus       180 ~i~~~L~~~g  189 (445)
                      +++++|++.|
T Consensus       160 ~~~~~L~~~G  169 (169)
T 2y1l_E          160 DLAEILQKLN  169 (169)
T ss_dssp             HHHHHHHTC-
T ss_pred             HHHHHHHHcC
Confidence            8999998765

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.96  E-value=3.8e-28  Score=236.86  Aligned_cols=94  Identities=29%  Similarity=0.311  Sum_probs=73.3

Q ss_pred             CcchHhHHHHc---CCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHH
Q 013339           93 GETVLHLTVKN---NQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVV  169 (445)
Q Consensus        93 g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a  169 (445)
                      |.||||+|+..   +..+++++|++.   +..+|.+|.+|+||||+|+..++.+++++|+++|++++.+|..|.||||+ 
T Consensus       211 ~~t~L~~A~~~~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~-  286 (351)
T 3utm_A          211 HETALHCAVASLHPKRKQVAELLLRK---GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHR-  286 (351)
T ss_dssp             CCCHHHHHHHCCSTTHHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH-
T ss_pred             CCCHHHHHHHHhCccHHHHHHHHHHc---CCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH-
Confidence            34444444444   224444444444   45678889999999999999999999999999999999999999999999 


Q ss_pred             hhhccccchhcHHHHHHHhcCccc
Q 013339          170 ESDASNSGALQIVPALEEAGARRC  193 (445)
Q Consensus       170 ~~~a~~~~~~~i~~~L~~~ga~~~  193 (445)
                         +...++.+++++|++.|++..
T Consensus       287 ---A~~~~~~~~v~~Ll~~gad~~  307 (351)
T 3utm_A          287 ---AALAGHLQTCRLLLSYGSDPS  307 (351)
T ss_dssp             ---HHHHTCHHHHHHHHHTTCCTT
T ss_pred             ---HHHcCcHHHHHHHHHcCCCCC
Confidence               455678889999999998753

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=1.5e-28  Score=214.41  Aligned_cols=161  Identities=24%  Similarity=0.304  Sum_probs=145.1

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHH
Q 013339           21 KDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLT  100 (445)
Q Consensus        21 ~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A  100 (445)
                      .|.+|.||||.|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|++.+ ..++.+|..|+||||+|
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A   82 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG-ADVHAKDKGGLVPLHNA   82 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcC-CCCCccCCCCCCHHHHH
Confidence            46789999999999999999999999665544557889999999999999999999999998 56788899999999999


Q ss_pred             HHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhc
Q 013339          101 VKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQ  180 (445)
Q Consensus       101 ~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~  180 (445)
                      +..|+.+++++|++.   +..++.+|.+|+||||+|+..++.+++++|+++|++++.+|..|.||+++    +.. ++.+
T Consensus        83 ~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~----a~~-~~~~  154 (165)
T 3twr_A           83 CSYGHYEVAELLVKH---GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL----VKD-GDTD  154 (165)
T ss_dssp             HHTTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGG----SCT-TCHH
T ss_pred             HHcCcHHHHHHHHhC---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHh----Hhc-CChH
Confidence            999999999999998   77899999999999999999999999999999999999999999999999    444 6679


Q ss_pred             HHHHHHHhcC
Q 013339          181 IVPALEEAGA  190 (445)
Q Consensus       181 i~~~L~~~ga  190 (445)
                      ++++|++.|+
T Consensus       155 i~~~L~~~gA  164 (165)
T 3twr_A          155 IQDLLRGDAA  164 (165)
T ss_dssp             HHHHHHTC--
T ss_pred             HHHHHhhccc
Confidence            9999998875

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=9.9e-28  Score=226.74  Aligned_cols=187  Identities=26%  Similarity=0.310  Sum_probs=169.2

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |..|+++.|++.+++++...+..|+||||+|+..|+.+++++|+++|++++. +|.+|.||||+|+..|+.++++.|+++
T Consensus        16 g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~   94 (285)
T 1wdy_A           16 EDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL-RKKNGATPFLLAAIAGSVKLLKLFLSK   94 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            6789999999999998866688999999999999999999999999999876 899999999999999999999999999


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCC----------CCCCCcHHHHHHhCCcHHHHHHHHhc
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMP----------DNDGNTILHLATAGKLTTMVIYLLKL  151 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~----------d~~g~T~LHlA~~~~~~~iv~~Ll~~  151 (445)
                      + ...+..+..|.||||+|+..|+.+++++|++.   +..++.+          +..|.||||.|+..++.+++++|++.
T Consensus        95 g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  170 (285)
T 1wdy_A           95 G-ADVNECDFYGFTAFMEAAVYGKVKALKFLYKR---GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE  170 (285)
T ss_dssp             T-CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT---TCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             C-CCCCccCcccCCHHHHHHHhCCHHHHHHHHHh---CCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHh
Confidence            8 56778889999999999999999999999998   5555555          78899999999999999999999976


Q ss_pred             -CCCccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCccc
Q 013339          152 -GVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRC  193 (445)
Q Consensus       152 -g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~  193 (445)
                       |++++..|..|.||++.+..........+++++|++.|++..
T Consensus       171 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~  213 (285)
T 1wdy_A          171 MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN  213 (285)
T ss_dssp             SCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred             cCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCC
Confidence             999999999999999997766555555889999999987643

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.96  E-value=3.5e-28  Score=231.77  Aligned_cols=176  Identities=23%  Similarity=0.333  Sum_probs=158.4

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |+.++++.|++.+.+++ ..|..|.||||+|+..|+.++++.|++.|+++..  +.+|.||||+|+..|+.++++.|++.
T Consensus       103 g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~  179 (285)
T 3d9h_A          103 GHLSCVKILLKHGAQVN-GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRGHVECVNSLIAY  179 (285)
T ss_dssp             TCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC--SCTTSCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CcHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            67899999999988776 7889999999999999999999999999999864  55699999999999999999999999


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccC
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK  161 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~  161 (445)
                      + ..++.+|.+|+||||+|+.+|+.+++++|++.   +..++ .|..|+||||+|+..++.+++++|++.|++++.+|.+
T Consensus       180 g-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~  254 (285)
T 3d9h_A          180 G-GNIDHKISHLGTPLYLACENQQRACVKKLLES---GADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAE  254 (285)
T ss_dssp             T-CCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHT---TCCTT-CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             C-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHC---CCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence            8 56788899999999999999999999999998   66677 4899999999999999999999999999999999999


Q ss_pred             CCCHHHHHhhhccccchhcHHHHHHHh-cCc
Q 013339          162 GYTALDVVESDASNSGALQIVPALEEA-GAR  191 (445)
Q Consensus       162 G~Tpl~~a~~~a~~~~~~~i~~~L~~~-ga~  191 (445)
                      |.||+++|.      ++.+++++|++. |++
T Consensus       255 g~t~l~~A~------~~~~~~~~Ll~~~~a~  279 (285)
T 3d9h_A          255 GKRPVELVP------PESPLAQLFLEREGAS  279 (285)
T ss_dssp             SCCGGGGSC------TTSHHHHHHHHHC---
T ss_pred             CCCHHHHhc------CccHHHHHHHHhhccC
Confidence            999999953      335799999988 544

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=1.3e-28  Score=233.58  Aligned_cols=179  Identities=24%  Similarity=0.315  Sum_probs=160.5

Q ss_pred             HHHHHHHHHHhchh-hhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCC-CCCCCCCCCCccHHHHHH-----HcCCHHHH
Q 013339            3 VADIVKELLEARQE-FAWKKDLNGHTPLHLSCSKGHLEITRELLKLDP-DLSSLPDNEGRTPLHWAA-----IKGRINII   75 (445)
Q Consensus         3 ~~d~v~~Ll~~~~~-~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~-~~~~~~d~~G~TpLh~Aa-----~~G~~~iv   75 (445)
                      ..+.++.+++...+ ..+..|.+|+||||+||..|+.++++.|++.|+ +++. .|..|.||||+|+     ..|+.+++
T Consensus        88 ~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~-~~~~g~tpL~~a~~~~~~~~~~~~~v  166 (276)
T 4hbd_A           88 HLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDK-QNRAGYSPIMLTALATLKTQDDIETV  166 (276)
T ss_dssp             HHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTC-CCTTSCCHHHHGGGCCCCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCC-CCCCCCCHHHHHHHHHhhhhhhHHHH
Confidence            45667777776655 346889999999999999999999999999998 5544 8999999999999     67899999


Q ss_pred             HHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHh-cCCC
Q 013339           76 DEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLK-LGVD  154 (445)
Q Consensus        76 ~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~-~g~~  154 (445)
                      +.|++.+ ......+..|+||||+|+.+|+.+++++|++.   +.++|.+|.+|+||||+|+..++.+++++|++ .|++
T Consensus       167 ~~Ll~~g-~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~---gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad  242 (276)
T 4hbd_A          167 LQLFRLG-NINAKASQAGQTALMLAVSHGRVDVVKALLAC---EADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD  242 (276)
T ss_dssp             HHHHHHS-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCC
T ss_pred             HHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHhC---CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC
Confidence            9999998 56677788999999999999999999999998   78899999999999999999999999999998 8999


Q ss_pred             ccccccCCCCHHHHHhhhccccchhcHHHHHHHhcC
Q 013339          155 VNAINRKGYTALDVVESDASNSGALQIVPALEEAGA  190 (445)
Q Consensus       155 ~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga  190 (445)
                      ++..|..|.|||++    +...++.+++++|++.+.
T Consensus       243 ~~~~d~~g~TpL~~----A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          243 ISLTDRDGSTALMV----ALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             TTCCCTTSCCHHHH----HHHHTCHHHHHHHHHHCC
T ss_pred             CcCcCCCCCCHHHH----HHHcCCHHHHHHHHhccC
Confidence            99999999999999    555678899999998753

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=1.7e-28  Score=213.02  Aligned_cols=159  Identities=26%  Similarity=0.354  Sum_probs=145.7

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHH
Q 013339           23 LNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVK  102 (445)
Q Consensus        23 ~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~  102 (445)
                      +...||||.|+..|+.++++.|++.|++++. +|..|+||||+|+. |+.+++++|++.+ ..++.++..|.||||+|+.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~-~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~   79 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQVMKL-GNPEIARRLLLRG-ANPDLKDRTGFAVIHDAAR   79 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCCTTC-CCTTSCCHHHHCCS-SCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCCccc-cCccCccHHHHHHc-CcHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHH
Confidence            3577999999999999999999999999976 89999999999999 9999999999997 5677889999999999999


Q ss_pred             cCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCC-ccccccCCCCHHHHHhhhccccchhcH
Q 013339          103 NNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVD-VNAINRKGYTALDVVESDASNSGALQI  181 (445)
Q Consensus       103 ~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~-~~~~n~~G~Tpl~~a~~~a~~~~~~~i  181 (445)
                      .|+.+++++|+++   +..++.+|.+|+||||+|+..++.+++++|+++|++ ++..|..|.||+++    +...++.++
T Consensus        80 ~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~----A~~~~~~~~  152 (162)
T 1ihb_A           80 AGFLDTLQTLLEF---QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL----ARLYGRNEV  152 (162)
T ss_dssp             HTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHH----HHHTTCHHH
T ss_pred             cCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHH----HHHcCCHHH
Confidence            9999999999997   778999999999999999999999999999999998 69999999999999    556678899


Q ss_pred             HHHHHHhcCc
Q 013339          182 VPALEEAGAR  191 (445)
Q Consensus       182 ~~~L~~~ga~  191 (445)
                      +++|+++|++
T Consensus       153 ~~~Ll~~GAd  162 (162)
T 1ihb_A          153 VSLMQANGAG  162 (162)
T ss_dssp             HHHHHHTC--
T ss_pred             HHHHHHhCCC
Confidence            9999999974

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=2.6e-29  Score=237.66  Aligned_cols=185  Identities=24%  Similarity=0.289  Sum_probs=156.2

Q ss_pred             CHHHHHHHHHHhch----hhh---cCCCCCCChHHHHHHHc---CCHHHHHHHhhcCCCCC----------CCCCCCCcc
Q 013339            2 HVADIVKELLEARQ----EFA---WKKDLNGHTPLHLSCSK---GHLEITRELLKLDPDLS----------SLPDNEGRT   61 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~----~~~---~~~d~~G~TpLH~Aa~~---g~~~iv~~LL~~~~~~~----------~~~d~~G~T   61 (445)
                      |+.++|+.|++...    +++   ...|..|+||||+||..   |+.++|++|++.|++..          ..+|..|+|
T Consensus        24 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~t  103 (273)
T 2pnn_A           24 SNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQT  103 (273)
T ss_dssp             TCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCC
T ss_pred             CCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCC
Confidence            45677777777543    222   14588999999999987   99999999999876421          115678999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCccccccc--------------cCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCC
Q 013339           62 PLHWAAIKGRINIIDEILSLNLQSAEMRTI--------------HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDN  127 (445)
Q Consensus        62 pLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~--------------~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~  127 (445)
                      |||+|+..|+.+++++|++++ ..++.++.              .|+||||+|+..|+.+++++|++....+.++|.+|.
T Consensus       104 pL~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~  182 (273)
T 2pnn_A          104 ALHIAIERRNMTLVTLLVENG-ADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDS  182 (273)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTT-CCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCT
T ss_pred             HHHHHHHcCCHHHHHHHHHCC-CCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCC
Confidence            999999999999999999998 45666665              799999999999999999999993212788999999


Q ss_pred             CCCcHHHHHHhCCc---------HHHHHHHHhcCCCcc-------ccccCCCCHHHHHhhhccccchhcHHHHHHHhcCc
Q 013339          128 DGNTILHLATAGKL---------TTMVIYLLKLGVDVN-------AINRKGYTALDVVESDASNSGALQIVPALEEAGAR  191 (445)
Q Consensus       128 ~g~T~LHlA~~~~~---------~~iv~~Ll~~g~~~~-------~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~  191 (445)
                      +|+||||+|+..++         .+++++|++.|++++       ..|..|.|||++    +...++.+++++|++.|++
T Consensus       183 ~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~----A~~~g~~~iv~~Ll~~ga~  258 (273)
T 2pnn_A          183 VGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLAL----AASSGKIGVLAYILQREIH  258 (273)
T ss_dssp             TSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHH----HHHTTCHHHHHHHHHHHTC
T ss_pred             CCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHH----HHHhChHHHHHHHHHCCCC
Confidence            99999999999887         799999999999996       589999999999    5566788999999999995

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=2.3e-29  Score=235.98  Aligned_cols=185  Identities=22%  Similarity=0.234  Sum_probs=154.6

Q ss_pred             HHHHHHHhchhhhc---CCCCCCChHHHHHH---HcCCHHHHHHHhhcCCCCC----------CCCCCCCccHHHHHHHc
Q 013339            6 IVKELLEARQEFAW---KKDLNGHTPLHLSC---SKGHLEITRELLKLDPDLS----------SLPDNEGRTPLHWAAIK   69 (445)
Q Consensus         6 ~v~~Ll~~~~~~~~---~~d~~G~TpLH~Aa---~~g~~~iv~~LL~~~~~~~----------~~~d~~G~TpLh~Aa~~   69 (445)
                      +++.+++.+.+++.   ..|..|+||||+|+   +.|+.++++.|++.|++..          ...|..|+||||+|+..
T Consensus        24 ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~  103 (260)
T 3jxi_A           24 LLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIER  103 (260)
T ss_dssp             HHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHT
T ss_pred             HHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHc
Confidence            44444457766652   33578999999999   7799999999999875421          22466899999999999


Q ss_pred             CCHHHHHHHHhcCCCcccccc--------------ccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHH
Q 013339           70 GRINIIDEILSLNLQSAEMRT--------------IHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHL  135 (445)
Q Consensus        70 G~~~iv~~Ll~~~~~~~~~~~--------------~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHl  135 (445)
                      |+.++++.|++.+ ..++.++              ..|+||||+|+..|+.+++++|++....+.++|.+|.+|+||||+
T Consensus       104 g~~~~v~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~  182 (260)
T 3jxi_A          104 RCKHYVELLVEKG-ADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHA  182 (260)
T ss_dssp             TCHHHHHHHHHTT-CCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHH
T ss_pred             CCHHHHHHHHhCC-CCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHH
Confidence            9999999999998 4566666              579999999999999999999999321278899999999999999


Q ss_pred             HHhCCc---------HHHHHHHHhcCCCc-------cccccCCCCHHHHHhhhccccchhcHHHHHHHhcCcccCC
Q 013339          136 ATAGKL---------TTMVIYLLKLGVDV-------NAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQ  195 (445)
Q Consensus       136 A~~~~~---------~~iv~~Ll~~g~~~-------~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~~~  195 (445)
                      |+..++         .+++++|+++|+++       +..|..|.||||+    |...++.+++++|+++|+.....
T Consensus       183 A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~----A~~~g~~~~v~~Ll~~g~~~~~~  254 (260)
T 3jxi_A          183 LVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMM----AAKTGKIGIFQHIIRREIADAAA  254 (260)
T ss_dssp             HHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHH----HHHTTCHHHHHHHHHHHHHHHC-
T ss_pred             HHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHH----HHHcCCHHHHHHHHHhCCCcccc
Confidence            998776         69999999999999       7899999999999    55668899999999999876543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.96  E-value=7.8e-29  Score=236.30  Aligned_cols=179  Identities=20%  Similarity=0.200  Sum_probs=152.3

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |+.++++.|++.+.+++..   +|+||||+|+..|+.+++++|+++|++++. +|..|+||||+|+..|+.+++++|+++
T Consensus        42 g~~~~v~~Ll~~g~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~  117 (285)
T 3kea_A           42 NNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKILLFSGLDDSQ-FDDKGNTALYYAVDSGNMQTVKLFVKK  117 (285)
T ss_dssp             TCHHHHHHHHHTTGGGSCC---TTCCHHHHHTTSSSCHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHhCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCcHHHHHHHcCCHHHHHHHHhc
Confidence            5678999999998887633   489999999999999999999999999876 788999999999999999999999998


Q ss_pred             CCCccccccccC-cchHhHHHHcCCHHHHHHHHHhcCcccccCCCCC-CCCcHHHHHHhCCcHHHHHHHHhcCCCccccc
Q 013339           82 NLQSAEMRTIHG-ETVLHLTVKNNQYEAVKYLMETLNITKLANMPDN-DGNTILHLATAGKLTTMVIYLLKLGVDVNAIN  159 (445)
Q Consensus        82 ~~~~~~~~~~~g-~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~-~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n  159 (445)
                      + ..++.++..| .||||+|+..|+.+++++|+++.   ...  .|. .|.||||+|+..++.+++++|+++|++++..|
T Consensus       118 g-a~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g---~~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~  191 (285)
T 3kea_A          118 N-WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI---PST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNN  191 (285)
T ss_dssp             C-GGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTS---CTT--CCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTC
T ss_pred             C-CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCC---Ccc--ccccCCccHHHHHHHcChHHHHHHHHHcCCCCCccc
Confidence            7 5677788888 79999999999999999999873   222  333 88999999999999999999999999999999


Q ss_pred             cCCCCH-HHHHhhhccccchhcHHHHHHHhcCcccC
Q 013339          160 RKGYTA-LDVVESDASNSGALQIVPALEEAGARRCD  194 (445)
Q Consensus       160 ~~G~Tp-l~~a~~~a~~~~~~~i~~~L~~~ga~~~~  194 (445)
                      ..|.|| |++    +...++.+++++|+++|++...
T Consensus       192 ~~g~t~~L~~----A~~~~~~~~v~~Ll~~gad~~~  223 (285)
T 3kea_A          192 SLLFIPDIKL----AIDNKDIEMLQALFKYDINIYS  223 (285)
T ss_dssp             CCBCCTTHHH----HHHHTCHHHHHHHTTSCBCSTT
T ss_pred             CCCCChHHHH----HHHcCCHHHHHHHHHcCCCCCC
Confidence            999997 999    4456678899999988887543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=2.3e-28  Score=214.67  Aligned_cols=161  Identities=26%  Similarity=0.363  Sum_probs=146.0

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcC
Q 013339           25 GHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNN  104 (445)
Q Consensus        25 G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g  104 (445)
                      +.||||.|+..|+.++++.|++.+++....+|..|+||||+|+..|+.+++++|++.+ ...+.++..|+||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG-ADPHILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCchhhcccCCCHHHHHHHCC
Confidence            5789999999999999999999998855558999999999999999999999999998 567788889999999999999


Q ss_pred             CHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHH
Q 013339          105 QYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPA  184 (445)
Q Consensus       105 ~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~  184 (445)
                      +.+++++|+++   +..++.+|.+|+||||+|+..++.+++++|+++|++++..|..|.||+++    +...++.+++++
T Consensus        81 ~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~----A~~~~~~~~~~~  153 (172)
T 3v30_A           81 YTDIVGLLLER---DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDL----AVALGYRKVQQV  153 (172)
T ss_dssp             CHHHHHHHHTT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH----HHHHTCHHHHHH
T ss_pred             CHHHHHHHHHc---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH----HHHhCcHHHHHH
Confidence            99999999987   77889999999999999999999999999999999999999999999999    555678889999


Q ss_pred             HHHhcCccc
Q 013339          185 LEEAGARRC  193 (445)
Q Consensus       185 L~~~ga~~~  193 (445)
                      |+++|++..
T Consensus       154 L~~~~~~~~  162 (172)
T 3v30_A          154 IENHILKLF  162 (172)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHHh
Confidence            999988754

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.95  E-value=3.7e-28  Score=229.90  Aligned_cols=165  Identities=21%  Similarity=0.217  Sum_probs=139.5

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCC------------------------------
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDL------------------------------   51 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~------------------------------   51 (445)
                      |+.++++.|++.+.+++ ..|..|+||||+|+..|+.+++++|++++++.                              
T Consensus        56 g~~~~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (282)
T 1oy3_D           56 GEASTVEKLYAAGAGVL-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQP  134 (282)
T ss_dssp             TCHHHHHHHHHTTCCSS-CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC--------------------------
T ss_pred             CCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhcccc
Confidence            57899999999998876 77889999999999999999999999987652                              


Q ss_pred             ----------------CCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccc-ccCcchHhHHHHcCCHHHHHHHHH
Q 013339           52 ----------------SSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRT-IHGETVLHLTVKNNQYEAVKYLME  114 (445)
Q Consensus        52 ----------------~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~  114 (445)
                                      ...+|..|.||||+|+..|+.+++++|++.+. .++..+ ..|+||||+|+.+|+.+++++|++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~  213 (282)
T 1oy3_D          135 NPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA-DLNKPEPTCGRTPLHLAVEAQAASVLELLLK  213 (282)
T ss_dssp             ---------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcCHHHHHHHcCCHHHHHHHHH
Confidence                            12368899999999999999999999999984 455555 459999999999999999999999


Q ss_pred             hcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhh
Q 013339          115 TLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVES  171 (445)
Q Consensus       115 ~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~  171 (445)
                      +   +..++.+|..|+||||+|+..++.+++++|+++|++++.+|..|.||++++..
T Consensus       214 ~---gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~  267 (282)
T 1oy3_D          214 A---GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGS  267 (282)
T ss_dssp             T---TCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC------------
T ss_pred             c---CCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCC
Confidence            8   78899999999999999999999999999999999999999999999999643

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=3.7e-28  Score=213.31  Aligned_cols=159  Identities=22%  Similarity=0.214  Sum_probs=144.5

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |..++++.|++.++...+..|..|+||||+|+..|+.+++++|+++|++++. +|..|.||||+|+..|+.+++++|++.
T Consensus        13 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~   91 (172)
T 3v30_A           13 GELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI-LAKERESALSLASTGGYTDIVGLLLER   91 (172)
T ss_dssp             TCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchh-hcccCCCHHHHHHHCCCHHHHHHHHHc
Confidence            6789999999999997779999999999999999999999999999999876 899999999999999999999999999


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccC
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK  161 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~  161 (445)
                      + ...+.+|..|+||||+|+..|+.+++++|++.   +..++.+|.+|.||||+|+..++.+++++|+++++++...|..
T Consensus        92 g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~  167 (172)
T 3v30_A           92 D-VDINIYDWNGGTPLLYAVRGNHVKCVEALLAR---GADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLV  167 (172)
T ss_dssp             T-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC---
T ss_pred             C-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCC
Confidence            8 56788899999999999999999999999998   7789999999999999999999999999999999999999999


Q ss_pred             CCCH
Q 013339          162 GYTA  165 (445)
Q Consensus       162 G~Tp  165 (445)
                      |.||
T Consensus       168 ~~~p  171 (172)
T 3v30_A          168 PADP  171 (172)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            9887

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.95  E-value=6.7e-28  Score=222.20  Aligned_cols=185  Identities=25%  Similarity=0.393  Sum_probs=131.5

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |..|+++.|++.+.++. ..|..|.||||+|+..|+.++++.|++.++++....+..|.||||+|+..|+.++++.|++.
T Consensus        20 g~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~   98 (240)
T 3eu9_A           20 GIYERCRELVEAGYDVR-QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY   98 (240)
T ss_dssp             TCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CChHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHc
Confidence            56778888888876655 66777888888888888888888888888877765666688888888888888888888887


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcC-------------------------------cccccCCCCC-CC
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN-------------------------------ITKLANMPDN-DG  129 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~-------------------------------~~~~~n~~d~-~g  129 (445)
                      + ...+..+..|.||||.|+..|+.+++++|+++..                               .+..++..+. .|
T Consensus        99 g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g  177 (240)
T 3eu9_A           99 G-ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK  177 (240)
T ss_dssp             T-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTC
T ss_pred             C-CCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCC
Confidence            6 4556667778888888888888888888877511                               0223344444 66


Q ss_pred             CcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCcc
Q 013339          130 NTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARR  192 (445)
Q Consensus       130 ~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~  192 (445)
                      +||||+|+..++.+++++|+++|++++..|..|.||+++    +...++.+++++|++.++..
T Consensus       178 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~----A~~~~~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          178 NTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDL----AKQRKNVWMINHLQEARQAK  236 (240)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHH----HHHTTCHHHHHHHHHHC---
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH----HHHcCcHHHHHHHHHhhhcc
Confidence            677777777777777777777777777777777777777    44455666777777766554

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=7.9e-28  Score=212.85  Aligned_cols=163  Identities=21%  Similarity=0.251  Sum_probs=148.4

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHH
Q 013339           23 LNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVK  102 (445)
Q Consensus        23 ~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~  102 (445)
                      .++.+|||.||..|+.++++.|++.++.....+|..|+||||+|+..|+.+++++|++.+ ..++.+|..|.||||+|+.
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~   81 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG-ARINVMNRGDDTPLHLAAS   81 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHH
Confidence            468899999999999999999999866544558999999999999999999999999998 5678889999999999999


Q ss_pred             cCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHH
Q 013339          103 NNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV  182 (445)
Q Consensus       103 ~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~  182 (445)
                      .|+.+++++|++.   +..+|.+|.+|+||||+|+..++.+++++|+++|++++..|..|.||+++    +...++.+++
T Consensus        82 ~~~~~~v~~Ll~~---g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~----A~~~~~~~~~  154 (179)
T 3f6q_A           82 HGHRDIVQKLLQY---KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDK----AKAPLRELLR  154 (179)
T ss_dssp             TTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGG----SCHHHHHHHH
T ss_pred             cCCHHHHHHHHHc---CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHH----HHHHHHHHHH
Confidence            9999999999998   77899999999999999999999999999999999999999999999999    6667888999


Q ss_pred             HHHHHhcCccc
Q 013339          183 PALEEAGARRC  193 (445)
Q Consensus       183 ~~L~~~ga~~~  193 (445)
                      ++|++.|++..
T Consensus       155 ~~L~~~g~~~~  165 (179)
T 3f6q_A          155 ERAEKMGQNLN  165 (179)
T ss_dssp             HHHHHTTCCCS
T ss_pred             HHHHHhhcCcc
Confidence            99999998764

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.95  E-value=3.9e-28  Score=240.43  Aligned_cols=176  Identities=24%  Similarity=0.294  Sum_probs=83.2

Q ss_pred             HHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCC--C
Q 013339            7 VKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNL--Q   84 (445)
Q Consensus         7 v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~--~   84 (445)
                      ++.|++.+.+++ ..|..|.||||+|+..|+.++|++|+++|++++. +|..|.||||+|+..|+.+++++|++.+.  .
T Consensus       149 ~~~ll~~ga~vn-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~  226 (373)
T 2fo1_E          149 AKECIAAGADVN-AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI-YNKSERSALHQAAANRDFGMMVYMLNSTKLKG  226 (373)
T ss_dssp             HHHHHHTCCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHH
T ss_pred             HHHHHhcCCCCc-CCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcc-cCCCCCCHHHHHHHCCCHHHHHHHHhcCcccc
Confidence            344555554443 4455555555555555555555555555555543 45555555555555555555555555432  2


Q ss_pred             ccccccccCcchHhHHHHcC---CHHHHHHHHHhcCcccccC--------CCCCCCCcHHHHHHhCCcHHHHHHHHhcC-
Q 013339           85 SAEMRTIHGETVLHLTVKNN---QYEAVKYLMETLNITKLAN--------MPDNDGNTILHLATAGKLTTMVIYLLKLG-  152 (445)
Q Consensus        85 ~~~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~~~n--------~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g-  152 (445)
                      ..+..|..|.||||+|+..+   +.+++++|++.   +..++        .+|..|.||||+|+..++.+++++|++.+ 
T Consensus       227 ~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~---g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~  303 (373)
T 2fo1_E          227 DIEELDRNGMTALMIVAHNEGRDQVASAKLLVEK---GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG  303 (373)
T ss_dssp             TTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHH---TCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSC
T ss_pred             ChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHC---CCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcC
Confidence            33334444444444444444   44444444444   22222        13344444444444444444444444332 


Q ss_pred             CCccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCc
Q 013339          153 VDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGAR  191 (445)
Q Consensus       153 ~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~  191 (445)
                      ++++..|..|.||||+    +...++.+++++|++.|++
T Consensus       304 ~~~n~~d~~g~TpL~~----A~~~g~~~iv~~Ll~~gad  338 (373)
T 2fo1_E          304 SNKDKQDEDGKTPIML----AAQEGRIEVVMYLIQQGAS  338 (373)
T ss_dssp             CCTTCCCTTCCCHHHH----HHHHTCHHHHHHHHHTTCC
T ss_pred             CCccCcCCCCCCHHHH----HHHcCCHHHHHHHHHcCCC
Confidence            4444444444444444    2223334444444444443

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.95  E-value=1.1e-27  Score=233.55  Aligned_cols=187  Identities=25%  Similarity=0.286  Sum_probs=157.3

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCC----------------------------
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS----------------------------   53 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~----------------------------   53 (445)
                      |+.|+|+.||+.+.+++...+..|+||||+||..|+.++|++||++|++++.                            
T Consensus        36 g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (337)
T 4g8k_A           36 EDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKG  115 (337)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             CCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhcc
Confidence            6789999999999998855566799999999999999999999999876532                            


Q ss_pred             ----CCCCCCccHHHHHHHcCCHHHHHHHHhcCCCc---------cccccccCcchHhHHHHcCCHHHHHHHHHhc----
Q 013339           54 ----LPDNEGRTPLHWAAIKGRINIIDEILSLNLQS---------AEMRTIHGETVLHLTVKNNQYEAVKYLMETL----  116 (445)
Q Consensus        54 ----~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~---------~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~----  116 (445)
                          ..|..|.||||+|+..|+.++++.+++.+...         ....+..|.||||+|+.+|+.+++++|+++.    
T Consensus       116 ~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~  195 (337)
T 4g8k_A          116 ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV  195 (337)
T ss_dssp             CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT
T ss_pred             chhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc
Confidence                25778999999999999999999999987432         1234557999999999999999999998631    


Q ss_pred             -------------------------------CcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHh-cCCCccccccCCCC
Q 013339          117 -------------------------------NITKLANMPDNDGNTILHLATAGKLTTMVIYLLK-LGVDVNAINRKGYT  164 (445)
Q Consensus       117 -------------------------------~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~-~g~~~~~~n~~G~T  164 (445)
                                                     ..+.++|.+|.+|+||||+|+..++.++++.|++ .|++++.+|.+|+|
T Consensus       196 n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~T  275 (337)
T 4g8k_A          196 NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKT  275 (337)
T ss_dssp             TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCB
T ss_pred             CccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCC
Confidence                                           0133567888999999999999999999999995 58999999999999


Q ss_pred             HHHHHhhhccccchhcHHHHHHHhcCcc
Q 013339          165 ALDVVESDASNSGALQIVPALEEAGARR  192 (445)
Q Consensus       165 pl~~a~~~a~~~~~~~i~~~L~~~ga~~  192 (445)
                      |||+    |...++.+++++|+++|++.
T Consensus       276 pL~~----A~~~g~~~iv~~Ll~~GAd~  299 (337)
T 4g8k_A          276 ALLL----AVELKLKKIAELLCKRGAST  299 (337)
T ss_dssp             HHHH----HHHTTCHHHHHHHHTTSCSS
T ss_pred             HHHH----HHHcCCHHHHHHHHHCCCCC
Confidence            9999    45567889999999999865

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=1.1e-27  Score=206.23  Aligned_cols=151  Identities=26%  Similarity=0.294  Sum_probs=139.9

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcC
Q 013339           25 GHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNN  104 (445)
Q Consensus        25 G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g  104 (445)
                      +.||||.|+..|+.++++.|++.|++..  .|..|.||||+|+..|+.+++++|++.+ ...+.++..|+||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~   78 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAG-VSRDARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHHT
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcC
Confidence            4689999999999999999999999875  5889999999999999999999999988 567788899999999999999


Q ss_pred             CHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHH
Q 013339          105 QYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPA  184 (445)
Q Consensus       105 ~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~  184 (445)
                      +.+++++|+++   +..++.+|.+|+||||+|+..++.+++++|+++|++++.+|..|.||+++    +...++.+++++
T Consensus        79 ~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~----A~~~~~~~i~~~  151 (153)
T 1awc_B           79 HANIVEVLLKH---GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDI----SIDNGNEDLAEI  151 (153)
T ss_dssp             CHHHHHHHHTT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH----HHHTTCHHHHHH
T ss_pred             hHHHHHHHHHc---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH----HHHcCCHHHHHH
Confidence            99999999987   77899999999999999999999999999999999999999999999999    555677778877


Q ss_pred             H
Q 013339          185 L  185 (445)
Q Consensus       185 L  185 (445)
                      |
T Consensus       152 L  152 (153)
T 1awc_B          152 L  152 (153)
T ss_dssp             H
T ss_pred             h
Confidence            6

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.95  E-value=1.6e-27  Score=240.56  Aligned_cols=181  Identities=30%  Similarity=0.416  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcC
Q 013339            3 VADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLN   82 (445)
Q Consensus         3 ~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~   82 (445)
                      +.|+++.|++.+.+.. ..+..|.||||+|+..|+.++++.|++.|++++. ++..|.||||+|+..|+.+++++|++.+
T Consensus       191 ~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~~  268 (437)
T 1n11_A          191 NLDIVKLLLPRGGSPH-SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANA-ESVQGVTPLHLAAQEGHAEMVALLLSKQ  268 (437)
T ss_dssp             CHHHHHHHGGGTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             CHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHCCCHHHHHHHHhcC
Confidence            4555666665555443 4455566666666666666666666666666544 5666777777777777777777777665


Q ss_pred             CCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCC
Q 013339           83 LQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKG  162 (445)
Q Consensus        83 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G  162 (445)
                       ...+..+..|.||||+|+..|+.+++++|+++   +..+|.+|..|+||||+|+..++.+++++|+++|++++.+|..|
T Consensus       269 -~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g  344 (437)
T 1n11_A          269 -ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH---GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLG  344 (437)
T ss_dssp             -CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH---TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTS
T ss_pred             -CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC---CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCC
Confidence             34556667777777777777777777777776   66677888888888888888888888888888888888888888


Q ss_pred             CCHHHHHhhhccccchhcHHHHHHHhcCccc
Q 013339          163 YTALDVVESDASNSGALQIVPALEEAGARRC  193 (445)
Q Consensus       163 ~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~  193 (445)
                      .||||+    +...++.+++++|+++|++..
T Consensus       345 ~t~L~~----A~~~g~~~iv~~Ll~~ga~~~  371 (437)
T 1n11_A          345 YSPLHQ----AAQQGHTDIVTLLLKNGASPN  371 (437)
T ss_dssp             CCHHHH----HHHTTCHHHHHHHHHTTCCSC
T ss_pred             CCHHHH----HHHCChHHHHHHHHHCcCCCC
Confidence            888888    444567778888888887654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.95  E-value=1.9e-27  Score=218.87  Aligned_cols=161  Identities=20%  Similarity=0.244  Sum_probs=142.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhc-CCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCcc----ccccccCcchHh
Q 013339           24 NGHTPLHLSCSKGHLEITRELLKL-DPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA----EMRTIHGETVLH   98 (445)
Q Consensus        24 ~G~TpLH~Aa~~g~~~iv~~LL~~-~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~----~~~~~~g~t~Lh   98 (445)
                      .|+||||+|+..|+.++++.|++. |.+++. +|.+|+||||+|+..|+.++++.|++.++...    ..+|..|.||||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~   80 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQ-RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH   80 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCccc-CCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence            589999999999999999999998 888866 89999999999999999999999999986532    556778999999


Q ss_pred             HHHHcCCHHHHHHHHHhcCcccccCCCCC-------------CCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCH
Q 013339           99 LTVKNNQYEAVKYLMETLNITKLANMPDN-------------DGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTA  165 (445)
Q Consensus        99 ~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~-------------~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tp  165 (445)
                      +|+.+|+.+++++|+++   +..++.++.             +|+||||+|+..++.+++++|+++|++++.+|..|.||
T Consensus        81 ~A~~~~~~~~v~~Ll~~---g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~  157 (232)
T 2rfa_A           81 IAVINQNVNLVRALLAR---GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV  157 (232)
T ss_dssp             HHHHTTCHHHHHHHHHT---TCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             HHHHcCCHHHHHHHHhC---CCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            99999999999999998   555665544             89999999999999999999999999999999999999


Q ss_pred             HHHHhhhccccchhcHH----HHHHHhcCcc
Q 013339          166 LDVVESDASNSGALQIV----PALEEAGARR  192 (445)
Q Consensus       166 l~~a~~~a~~~~~~~i~----~~L~~~ga~~  192 (445)
                      ||+|.    ..++.+++    ++|++.|+..
T Consensus       158 L~~A~----~~~~~~~~~~i~~~Ll~~g~~~  184 (232)
T 2rfa_A          158 LHILI----LQPNKTFACQMYNLLLSYDGGD  184 (232)
T ss_dssp             HHHHH----TCSCHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHH----HcCChHHHHHHHHHHHhcCCch
Confidence            99954    44455544    9999999864

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.95  E-value=2.5e-28  Score=237.50  Aligned_cols=165  Identities=23%  Similarity=0.286  Sum_probs=139.4

Q ss_pred             HHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCC---HHHHHHHHh
Q 013339            4 ADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGR---INIIDEILS   80 (445)
Q Consensus         4 ~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~---~~iv~~Ll~   80 (445)
                      .++++.|++.+.+++...|..|+||||+||..|+.++|++||++|++++. +|.+|+||||+|+..|+   .++++.|++
T Consensus       110 ~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~-~d~~g~TpLh~A~~~g~~~~~~~~~~ll~  188 (327)
T 1sw6_A          110 QEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY-GDNMGESCLVKAVKSVNNYDSGTFEALLD  188 (327)
T ss_dssp             HHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTB-CCTTCCCHHHHHHHSSHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHhcccccHHHHHHHHH
Confidence            46777777777777744899999999999999999999999999999976 89999999999999999   788889998


Q ss_pred             cCCCccccccccCcchHhHHHH----cCCHHHHHHHHHhcCc-----------------cc-------------------
Q 013339           81 LNLQSAEMRTIHGETVLHLTVK----NNQYEAVKYLMETLNI-----------------TK-------------------  120 (445)
Q Consensus        81 ~~~~~~~~~~~~g~t~Lh~A~~----~g~~~~v~~Ll~~~~~-----------------~~-------------------  120 (445)
                      .+....+.+|..|+||||+|+.    .|+.+++++|++....                 +.                   
T Consensus       189 ~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~  268 (327)
T 1sw6_A          189 YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDL  268 (327)
T ss_dssp             HHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSH
T ss_pred             hhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHH
Confidence            8867788999999999999999    8999999999876310                 11                   


Q ss_pred             ------ccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHH
Q 013339          121 ------LANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVV  169 (445)
Q Consensus       121 ------~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a  169 (445)
                            .+|.+|.+|+||||+|+..++.+++++|+++|++++.+|..|+||||+|
T Consensus       269 ~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A  323 (327)
T 1sw6_A          269 KWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG  323 (327)
T ss_dssp             HHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred             HHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence                  3677777888888888888888888888888888888888888888774

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.95  E-value=4.2e-27  Score=229.40  Aligned_cols=183  Identities=25%  Similarity=0.292  Sum_probs=162.1

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |+.+.++.++...+...+..|..|+||||+||..|+.+++++|+++|++++. +|..|+||||+|+..|+.+++++|+++
T Consensus        35 g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~iv~~Ll~~  113 (351)
T 3utm_A           35 GNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA-KDKGGLVPLHNACSYGHYEVTELLLKH  113 (351)
T ss_dssp             TCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCcHHHHHHHCCCHHHHHHHHHC
Confidence            5678899999886665568899999999999999999999999999999976 899999999999999999999999999


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccC--------------------------------------
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLAN--------------------------------------  123 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n--------------------------------------  123 (445)
                      + ..++..|..|.||||+|+.+|+.+++++|+++.   ..++                                      
T Consensus       114 g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~  189 (351)
T 3utm_A          114 G-ACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG---ADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREA  189 (351)
T ss_dssp             T-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             C-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhc
Confidence            8 567788899999999999999999999999973   3332                                      


Q ss_pred             ----------------CCCCCCCcHHHHHHhC---CcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHH
Q 013339          124 ----------------MPDNDGNTILHLATAG---KLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPA  184 (445)
Q Consensus       124 ----------------~~d~~g~T~LHlA~~~---~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~  184 (445)
                                      ..+..|.||||+|+..   +..+++++|++.|++++..|..|.||||+    +...++.+++++
T Consensus       190 ~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~----A~~~g~~~~v~~  265 (351)
T 3utm_A          190 DLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHV----AAERAHNDVMEV  265 (351)
T ss_dssp             CHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHH----HHHTTCHHHHHH
T ss_pred             cHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHH----HHHcCCHHHHHH
Confidence                            2456788999999998   66899999999999999999999999999    555677899999


Q ss_pred             HHHhcCccc
Q 013339          185 LEEAGARRC  193 (445)
Q Consensus       185 L~~~ga~~~  193 (445)
                      |++.|++..
T Consensus       266 Ll~~ga~~n  274 (351)
T 3utm_A          266 LHKHGAKMN  274 (351)
T ss_dssp             HHHTTCCTT
T ss_pred             HHHCCCCCC
Confidence            999997643

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.95  E-value=4e-27  Score=237.61  Aligned_cols=179  Identities=26%  Similarity=0.382  Sum_probs=165.3

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      ++.++++.|++.+.+++ ..|..|.||||+|+..|+.+++++|++++++++. .|..|.||||+|+..|+.++++.|+++
T Consensus       223 ~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~  300 (437)
T 1n11_A          223 NQVEVARSLLQYGGSAN-AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL-GNKSGLTPLHLVAQEGHVPVADVLIKH  300 (437)
T ss_dssp             TCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence            56899999999998866 7788999999999999999999999999999876 899999999999999999999999999


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccC
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK  161 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~  161 (445)
                      + ..++.++..|+||||+|+.+|+.+++++|+++   +.++|.+|..|+||||+|+..++.+++++|+++|++++.+|.+
T Consensus       301 g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~  376 (437)
T 1n11_A          301 G-VMVDATTRMGYTPLHVASHYGNIKLVKFLLQH---QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSD  376 (437)
T ss_dssp             T-CCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSS
T ss_pred             C-ccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhc---CCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCC
Confidence            8 56788899999999999999999999999998   7889999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhhhccccchhcHHHHHHHhcC
Q 013339          162 GYTALDVVESDASNSGALQIVPALEEAGA  190 (445)
Q Consensus       162 G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga  190 (445)
                      |.||+++|    ...++.+++++|.....
T Consensus       377 g~t~l~~A----~~~g~~~~~~~l~~~~~  401 (437)
T 1n11_A          377 GTTPLAIA----KRLGYISVTDVLKVVTD  401 (437)
T ss_dssp             SCCHHHHH----HHTTCHHHHHHHHHHCC
T ss_pred             CCCHHHHH----HHcCcHHHHHHHHhccc
Confidence            99999994    45567788888876653

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.95  E-value=4.5e-27  Score=216.63  Aligned_cols=168  Identities=25%  Similarity=0.300  Sum_probs=149.0

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhH
Q 013339           20 KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHL   99 (445)
Q Consensus        20 ~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~   99 (445)
                      ..|..|.||||.|+..|+.++++.|++.|.+++. +|..|.||||+|+..|+.++++.|++.++......+..|.||||+
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~   82 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQ-PDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW   82 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHH
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHcCCCcCC-CCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHH
Confidence            5688999999999999999999999999999876 899999999999999999999999999977666777779999999


Q ss_pred             HHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchh
Q 013339          100 TVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGAL  179 (445)
Q Consensus       100 A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~  179 (445)
                      |+..|+.+++++|++.   +..++.+|..|.||||.|+..++.+++++|++.|++++..|..|.||++++....   ...
T Consensus        83 A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~---~~~  156 (240)
T 3eu9_A           83 ATRQGHLSMVVQLMKY---GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRT---HSV  156 (240)
T ss_dssp             HHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHC---CSS
T ss_pred             HHHcCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhC---ChH
Confidence            9999999999999987   7788899999999999999999999999999999999999999999999965322   224


Q ss_pred             cHHHHHHHhcCcccC
Q 013339          180 QIVPALEEAGARRCD  194 (445)
Q Consensus       180 ~i~~~L~~~ga~~~~  194 (445)
                      +++++|++.|++...
T Consensus       157 ~~~~~L~~~~~~~~~  171 (240)
T 3eu9_A          157 DPTRLLLTFNVSVNL  171 (240)
T ss_dssp             TTHHHHHHTTCCTTC
T ss_pred             HHHHHHHhcCCCcch
Confidence            566666666665443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.95  E-value=4.6e-27  Score=232.68  Aligned_cols=183  Identities=21%  Similarity=0.284  Sum_probs=163.5

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcC---CCCCCCCCCCCccHHHHHHHcC---CHHHH
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLD---PDLSSLPDNEGRTPLHWAAIKG---RINII   75 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~---~~~~~~~d~~G~TpLh~Aa~~G---~~~iv   75 (445)
                      |+.++++.|++.+.+++ ..|..|.||||+|+..|+.+++++|++.+   .+++. .|..|.||||+|+..|   +.+++
T Consensus       177 g~~~iv~~Ll~~ga~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~d~~g~t~L~~A~~~~~~~~~~~v  254 (373)
T 2fo1_E          177 RRRRLVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEE-LDRNGMTALMIVAHNEGRDQVASA  254 (373)
T ss_dssp             TCHHHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSC-CCTTSCCHHHHHHHSCSTTHHHHH
T ss_pred             ChHHHHHHHHHCCCCCc-ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhh-cCCCCCCHHHHHHHhCCcchHHHH
Confidence            57899999999998876 77889999999999999999999999987   67765 8999999999999998   89999


Q ss_pred             HHHHhcCCCccc-------cccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHH
Q 013339           76 DEILSLNLQSAE-------MRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYL  148 (445)
Q Consensus        76 ~~Ll~~~~~~~~-------~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~L  148 (445)
                      +.|++.+.....       ..|..|.||||+|+..|+.+++++|++..  +..+|.+|.+|+||||+|+..|+.+++++|
T Consensus       255 ~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~--~~~~n~~d~~g~TpL~~A~~~g~~~iv~~L  332 (373)
T 2fo1_E          255 KLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK--GSNKDKQDEDGKTPIMLAAQEGRIEVVMYL  332 (373)
T ss_dssp             HHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHS--CCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhc--CCCccCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999854321       25678999999999999999999999873  367899999999999999999999999999


Q ss_pred             HhcCCCccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCcc
Q 013339          149 LKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARR  192 (445)
Q Consensus       149 l~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~  192 (445)
                      +++|++++.+|..|.||+++    +...++.+++++|+++++++
T Consensus       333 l~~gad~~~~d~~g~t~l~~----A~~~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          333 IQQGASVEAVDATDHTARQL----AQANNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             HHTTCCSSCCCSSSCCHHHH----HHHTTCHHHHHHHHTTC---
T ss_pred             HHcCCCccCCCCCCCCHHHH----HHHcCCHHHHHHHHhcCccc
Confidence            99999999999999999999    55668899999999988764

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.94  E-value=1e-26  Score=222.33  Aligned_cols=183  Identities=20%  Similarity=0.292  Sum_probs=156.3

Q ss_pred             HHHHHHHHHHhchhhhc--------CCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHH
Q 013339            3 VADIVKELLEARQEFAW--------KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINI   74 (445)
Q Consensus         3 ~~d~v~~Ll~~~~~~~~--------~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~i   74 (445)
                      ..|.++.++....++..        ..+.+|.||||.||..|+.++|+.|++.|++++. .|.+|.||||+|+..|+.++
T Consensus        10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~~   88 (299)
T 1s70_B           10 RNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINY-ANVDGLTALHQACIDDNVDM   88 (299)
T ss_dssp             HHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTC-BCTTCCBHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHcCCHHH
Confidence            34566667766554332        2344678999999999999999999999999877 89999999999999999999


Q ss_pred             HHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHH-hcCC
Q 013339           75 IDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLL-KLGV  153 (445)
Q Consensus        75 v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll-~~g~  153 (445)
                      +++|++.+ ..++.+|..|.||||+|+..|+.+++++|+++   +..++.+|.+|.||||+|+..++.++++.++ ..++
T Consensus        89 v~~Ll~~g-a~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~  164 (299)
T 1s70_B           89 VKFLVENG-ANINQPDNEGWIPLHAAASCGYLDIAEYLISQ---GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV  164 (299)
T ss_dssp             HHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC---CCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCC
Confidence            99999988 56788899999999999999999999999998   7788999999999999999999999998887 5566


Q ss_pred             Cccc--------------------------cccCCCCHHHHHhhhccccchhcHHHHHHHhcCcccC
Q 013339          154 DVNA--------------------------INRKGYTALDVVESDASNSGALQIVPALEEAGARRCD  194 (445)
Q Consensus       154 ~~~~--------------------------~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~~  194 (445)
                      +++.                          .+..|.||||+|    ...++.+++++|++.|++...
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A----~~~g~~~~v~~Ll~~g~d~~~  227 (299)
T 1s70_B          165 DIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVA----AAKGYTEVLKLLIQARYDVNI  227 (299)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHH----HHHTCHHHHHHHHTTTCCTTC
T ss_pred             CchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHH----HHCCcHHHHHHHHHcCCCCCC
Confidence            6543                          456899999994    456778899999999987653

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.94  E-value=1.1e-27  Score=221.44  Aligned_cols=168  Identities=29%  Similarity=0.380  Sum_probs=146.0

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHhhcCC----CCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcc
Q 013339           20 KKDLNGHTPLHLSCSKGHLEITRELLKLDP----DLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGET   95 (445)
Q Consensus        20 ~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~----~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t   95 (445)
                      ..|.+|+||||+|+..|+.++++.|++.+.    +++. +|..|+||||+|+..|+.+++++|++.+ ..++.+|..|.|
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t   80 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNF-QNNLQQTPLHLAVITNQPEIAEALLGAG-CDPELRDFRGNT   80 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCC-CCTTCCCHHHHHHHTTCHHHHHCCCSCC-CCSCCCCTTCCC
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhc-cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCC
Confidence            568899999999999999999999999876    4544 8999999999999999999999999988 567888999999


Q ss_pred             hHhHHHHcCCHHHHHHHHHhcCc---ccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCcccccc-CCCCHHHHHhh
Q 013339           96 VLHLTVKNNQYEAVKYLMETLNI---TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINR-KGYTALDVVES  171 (445)
Q Consensus        96 ~Lh~A~~~g~~~~v~~Ll~~~~~---~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~-~G~Tpl~~a~~  171 (445)
                      |||+|+..|+.+++++|++....   ...++..|..|.||||+|+..++.+++++|+++|++++..+. .|.||||+   
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~---  157 (236)
T 1ikn_D           81 PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL---  157 (236)
T ss_dssp             HHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHH---
T ss_pred             HHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHH---
Confidence            99999999999999999997432   234678899999999999999999999999999999999998 99999999   


Q ss_pred             hccccchhcHHHHHHHhcCccc
Q 013339          172 DASNSGALQIVPALEEAGARRC  193 (445)
Q Consensus       172 ~a~~~~~~~i~~~L~~~ga~~~  193 (445)
                       +...++.+++++|++.|++..
T Consensus       158 -A~~~~~~~~v~~Ll~~ga~~~  178 (236)
T 1ikn_D          158 -AVDLQNPDLVSLLLKCGADVN  178 (236)
T ss_dssp             -HHHTTCHHHHHHHHTTTCCSC
T ss_pred             -HHHcCCHHHHHHHHHcCCCCC
Confidence             455678899999999998754

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.94  E-value=5.2e-27  Score=223.64  Aligned_cols=177  Identities=16%  Similarity=0.168  Sum_probs=155.0

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      +..++.+.|.+.  + .+..|..|.||||+|+..|+.++++.|+++|++++. +  +|+||||+|+..|+.+++++|++.
T Consensus        11 ~~~~v~~lL~~~--~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~--~g~t~L~~A~~~g~~~~v~~Ll~~   84 (285)
T 3kea_A           11 KSKQLKSFLSSK--D-TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL-L--ENEFPLHQAATLEDTKIVKILLFS   84 (285)
T ss_dssp             CHHHHHHHHHST--T-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSC-C--TTCCHHHHHTTSSSCHHHHHHHHT
T ss_pred             CHHHHHHHHHhC--C-CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-C--CCCCHHHHHHHcCCHHHHHHHHHC
Confidence            344555555554  3 348899999999999999999999999999999876 3  599999999999999999999999


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCC-CcHHHHHHhCCcHHHHHHHHhcCCCcccccc
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDG-NTILHLATAGKLTTMVIYLLKLGVDVNAINR  160 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g-~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~  160 (445)
                      + ..++.+|..|.||||+|+..|+.+++++|+++   +..++.+|..| .||||+|+..++.+++++|+++|++.... .
T Consensus        85 g-a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~---ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~  159 (285)
T 3kea_A           85 G-LDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK---NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-A  159 (285)
T ss_dssp             T-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH---CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-S
T ss_pred             C-CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc---CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-c
Confidence            8 56778899999999999999999999999998   77899999999 89999999999999999999999887333 2


Q ss_pred             CCCCHHHHHhhhccccchhcHHHHHHHhcCccc
Q 013339          161 KGYTALDVVESDASNSGALQIVPALEEAGARRC  193 (445)
Q Consensus       161 ~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~  193 (445)
                      .|.||||+    +...++.+++++|++.|++..
T Consensus       160 ~g~t~L~~----A~~~g~~~~v~~Ll~~gad~n  188 (285)
T 3kea_A          160 ILLSCIHI----TIKNGHVDMMILLLDYMTSTN  188 (285)
T ss_dssp             THHHHHHH----HHHTTCHHHHHHHHHHHHHTC
T ss_pred             CCccHHHH----HHHcChHHHHHHHHHcCCCCC
Confidence            89999999    556678899999999998754

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.94  E-value=4.9e-26  Score=204.58  Aligned_cols=168  Identities=22%  Similarity=0.228  Sum_probs=150.0

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhcCC-CCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHH
Q 013339           22 DLNGHTPLHLSCSKGHLEITRELLKLDP-DLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLT  100 (445)
Q Consensus        22 d~~G~TpLH~Aa~~g~~~iv~~LL~~~~-~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A  100 (445)
                      +..+.||||.|+..|+.+.++.|++.++ +++. .|.+|+||||+|+..|+.+++++|++.+ ..++.++..|.||||+|
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A   79 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDE-VDTEGNTPLNIAVHNNDIEIAKALIDRG-ADINLQNSISDSPYLYA   79 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHH
Confidence            4578999999999999999999999887 6554 8999999999999999999999999998 56788899999999999


Q ss_pred             HHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcC-CCccccccCCCCHHHHHhhhcc-ccch
Q 013339          101 VKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG-VDVNAINRKGYTALDVVESDAS-NSGA  178 (445)
Q Consensus       101 ~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g-~~~~~~n~~G~Tpl~~a~~~a~-~~~~  178 (445)
                      +..|+.+++++|++..  +..++.+|..|.||||+|+..++.+++++|++.| ++++..|..|.||||++..... ..++
T Consensus        80 ~~~~~~~~~~~Ll~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~  157 (201)
T 3hra_A           80 GAQGRTEILAYMLKHA--TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLY  157 (201)
T ss_dssp             HHTTCHHHHHHHHHHS--CCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHH
T ss_pred             HHcCCHHHHHHHHhcc--CcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhH
Confidence            9999999999999663  5578899999999999999999999999999998 9999999999999999765443 3334


Q ss_pred             hcHHHHHHHhcCccc
Q 013339          179 LQIVPALEEAGARRC  193 (445)
Q Consensus       179 ~~i~~~L~~~ga~~~  193 (445)
                      .+++++|++.|++..
T Consensus       158 ~~~v~~Ll~~ga~~~  172 (201)
T 3hra_A          158 QDIVKLLMENGADQS  172 (201)
T ss_dssp             HHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHHCCCCCC
Confidence            889999999998753

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=1.5e-26  Score=200.75  Aligned_cols=146  Identities=22%  Similarity=0.294  Sum_probs=134.6

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |+.++++.|++.+++++ ..|..|+||||+|+. |+.+++++|+++|++++. +|..|.||||+|+..|+.++++.|++.
T Consensus        16 g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~   92 (162)
T 1ihb_A           16 GDLEQLTSLLQNNVNVN-AQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL-KDRTGFAVIHDAARAGFLDTLQTLLEF   92 (162)
T ss_dssp             TCHHHHHHHTTSCCCTT-CCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHhCCCCcc-ccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            57899999999988876 778999999999999 999999999999999976 899999999999999999999999999


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccc-cCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCC
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKL-ANMPDNDGNTILHLATAGKLTTMVIYLLKLGVD  154 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~-~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~  154 (445)
                      + ..++.+|..|+||||+|+..|+.+++++|+++   +.. ++.+|..|.||||+|+..++.+++++|+++|++
T Consensus        93 g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A           93 Q-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH---TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             T-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH---SCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             C-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc---cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            8 56788899999999999999999999999998   444 688999999999999999999999999999975

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=4.2e-26  Score=199.84  Aligned_cols=145  Identities=30%  Similarity=0.441  Sum_probs=135.6

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |+.|+++.|++.+.+++ ..|..|.||||+|+..|+.++++.|+++|++++. +|..|.||||+|+..|+.+++++|++.
T Consensus        25 g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~  102 (169)
T 2y1l_E           25 GRDDEVRILMANGADVN-AEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA-VDHAGMTPLRLAALFGHLEIVEVLLKN  102 (169)
T ss_dssp             TCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            67899999999998876 7789999999999999999999999999999876 899999999999999999999999999


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcC
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG  152 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g  152 (445)
                      + ...+.+|..|+||||+|+..|+.+++++|+++   +..++.+|..|.||||+|+..++.+++++|++.|
T Consensus       103 g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          103 G-ADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN---GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             T-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             C-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            8 56778899999999999999999999999998   7788999999999999999999999999999875

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=1.3e-26  Score=199.91  Aligned_cols=153  Identities=24%  Similarity=0.352  Sum_probs=138.9

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhcC-CCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHc
Q 013339           25 GHTPLHLSCSKGHLEITRELLKLD-PDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKN  103 (445)
Q Consensus        25 G~TpLH~Aa~~g~~~iv~~LL~~~-~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~  103 (445)
                      |.||||.|+..|+.++++.|++.. .+++. .|..|+||||+ +..|+.++++.|++.+ ..++.+|..|.||||+|+.+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~-~~~~g~t~L~~-~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~   78 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDA-LNRFGKTALQV-MMFGSTAIALELLKQG-ASPNVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTC-CCTTSCCHHHH-SCTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccc-cCCCCCcHHHH-HHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHc
Confidence            579999999999999999999983 25544 89999999999 9999999999999997 56788899999999999999


Q ss_pred             CCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHH
Q 013339          104 NQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVP  183 (445)
Q Consensus       104 g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~  183 (445)
                      |+.+++++|++.   +..++.+|.+|+||||+|+..++.+++++|++. ++++..|..|.||+++    +...++.++++
T Consensus        79 ~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~----A~~~~~~~~v~  150 (156)
T 1bd8_A           79 GFLDTLKVLVEH---GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLEL----ALQRGAQDLVD  150 (156)
T ss_dssp             TCHHHHHHHHHT---TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHH----HHHSCCHHHHH
T ss_pred             CcHHHHHHHHHc---CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHH----HHHcCcHHHHH
Confidence            999999999997   678999999999999999999999999999988 9999999999999999    55667888999


Q ss_pred             HHHHh
Q 013339          184 ALEEA  188 (445)
Q Consensus       184 ~L~~~  188 (445)
                      +|+++
T Consensus       151 ~Ll~~  155 (156)
T 1bd8_A          151 ILQGH  155 (156)
T ss_dssp             HHHTT
T ss_pred             HHHhh
Confidence            88753

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=1.3e-26  Score=205.06  Aligned_cols=156  Identities=22%  Similarity=0.289  Sum_probs=145.8

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |+.++++.|++.++...+..|..|+||||+||..|+.+++++|++.|++++. +|..|.||||+|+..|+.+++++|++.
T Consensus        16 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~   94 (179)
T 3f6q_A           16 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV-MNRGDDTPLHLAASHGHRDIVQKLLQY   94 (179)
T ss_dssp             TCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            5789999999998776678999999999999999999999999999999977 899999999999999999999999999


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccC
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK  161 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~  161 (445)
                      + ..++.+|..|.||||+|+..|+.+++++|+++   +..++.+|.+|.||||+|+..++.+++++|++.|++++..+..
T Consensus        95 g-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~  170 (179)
T 3f6q_A           95 K-ADINAVNEHGNVPLHYACFWGQDQVAEDLVAN---GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYK  170 (179)
T ss_dssp             T-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCCC
T ss_pred             C-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccCCcc
Confidence            8 57788899999999999999999999999998   7789999999999999999999999999999999999877655


Q ss_pred             C
Q 013339          162 G  162 (445)
Q Consensus       162 G  162 (445)
                      +
T Consensus       171 ~  171 (179)
T 3f6q_A          171 D  171 (179)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.94  E-value=1.6e-26  Score=227.70  Aligned_cols=165  Identities=21%  Similarity=0.253  Sum_probs=111.1

Q ss_pred             cCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHh
Q 013339           19 WKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLH   98 (445)
Q Consensus        19 ~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh   98 (445)
                      ...|.+|.||||+||..|+.++|++|+++|++++. +|..|.||||+|+..|+.+++++|++.+..   ..+.+|.||||
T Consensus        14 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~g~t~L~   89 (364)
T 3ljn_A           14 IKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTI-QNRFGCTALHLACKFGCVDTAKYLASVGEV---HSLWHGQKPIH   89 (364)
T ss_dssp             --CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHCCHHHHHHHHHHCCC---CCCBTTBCHHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cCCCCCcHHHHHHHcCCHHHHHHHHHCCCC---ccccCCCCHHH
Confidence            46788899999999999999999999999999976 899999999999999999999999998852   22235566666


Q ss_pred             HHHHcCCHHHHHHHHHhcCc-cccc-----------------CCCCCCCCcHHHHHHhCC--cHHHHHHHHhcCCCcccc
Q 013339           99 LTVKNNQYEAVKYLMETLNI-TKLA-----------------NMPDNDGNTILHLATAGK--LTTMVIYLLKLGVDVNAI  158 (445)
Q Consensus        99 ~A~~~g~~~~v~~Ll~~~~~-~~~~-----------------n~~d~~g~T~LHlA~~~~--~~~iv~~Ll~~g~~~~~~  158 (445)
                      +|+..|+.+++++|++.... +..+                 +.+|.+|.||||+|+..+  +.+++++|++.|++++..
T Consensus        90 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~  169 (364)
T 3ljn_A           90 LAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAK  169 (364)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCC
T ss_pred             HHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCccc
Confidence            66666666666666554110 1111                 124455555555555555  555555555555555555


Q ss_pred             ccCCCCHHHHHhhhccccchhcHHHHHHHhcCc
Q 013339          159 NRKGYTALDVVESDASNSGALQIVPALEEAGAR  191 (445)
Q Consensus       159 n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~  191 (445)
                      |..|.|||++    +...++.+++++|++.|++
T Consensus       170 d~~g~t~L~~----A~~~g~~~~v~~Ll~~g~~  198 (364)
T 3ljn_A          170 DKADETPLMR----AMEFRNREALDLMMDTVPS  198 (364)
T ss_dssp             CTTSCCHHHH----HHHTTCHHHHHHHHHHCSC
T ss_pred             CCCCCCHHHH----HHHcCCHHHHHHHHhcccc
Confidence            5555555555    2333445555555555544

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=1.2e-26  Score=200.59  Aligned_cols=143  Identities=16%  Similarity=0.164  Sum_probs=118.5

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcc-hHh
Q 013339           20 KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGET-VLH   98 (445)
Q Consensus        20 ~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t-~Lh   98 (445)
                      ..+..|.||||+||..|+.++++.|+++|++++. +|..|+||||+|+ .|+.+++++|++.+ ..++.+|..|.| |||
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~-~~~~~~v~~Ll~~g-~~~~~~d~~g~ttpL~   83 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNA-PNSYGRRPIQVMM-MGSARVAELLLLHG-AEPNCADPATLTRPVH   83 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTC-CCSSSCCTTTSSC-TTCHHHHHHHHTTT-CCCCCCCTTTCCCHHH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHH-cCCHHHHHHHHHcC-CCCCCcCCCCCcHHHH
Confidence            5678899999999999999999999999999877 8999999999986 99999999999998 677888999999 999


Q ss_pred             HHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHH
Q 013339           99 LTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV  168 (445)
Q Consensus        99 ~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~  168 (445)
                      +|+..|+.+++++|+++   +..++.+|.+|+||||+|+..++.+++++|+++|++++..|..|.||.+-
T Consensus        84 ~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~  150 (156)
T 1bi7_B           84 DAAREGFLDTLVVLHRA---GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEG  150 (156)
T ss_dssp             HHHHHTCHHHHHHHHHH---TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred             HHHHCCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCccccc
Confidence            99999999999999998   78899999999999999999999999999999999999999999999775

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.94  E-value=1e-25  Score=219.43  Aligned_cols=180  Identities=26%  Similarity=0.285  Sum_probs=155.3

Q ss_pred             CHHHHHHHHHHhchhhhc---------CCCCCCChHHHHHHHcCCHHHHHHHhh-cCCCCCCCCCCCCccHHHHHHHcCC
Q 013339            2 HVADIVKELLEARQEFAW---------KKDLNGHTPLHLSCSKGHLEITRELLK-LDPDLSSLPDNEGRTPLHWAAIKGR   71 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~---------~~d~~G~TpLH~Aa~~g~~~iv~~LL~-~~~~~~~~~d~~G~TpLh~Aa~~G~   71 (445)
                      +..++++.+++.+.+++.         ..+..|.||||+||..|+.++|++||+ .|++++. +|..|.||||.++..++
T Consensus       136 ~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~-~d~~g~t~l~~~~~~~~  214 (337)
T 4g8k_A          136 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA-CDNMGRNALIHALLSSD  214 (337)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTC-CCTTSCCHHHHHHHHSC
T ss_pred             CcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCc-cCCCCCcHHHHHHHHcC
Confidence            567999999998876542         346679999999999999999999996 5888876 89999999999887655


Q ss_pred             ----HHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHH
Q 013339           72 ----INIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIY  147 (445)
Q Consensus        72 ----~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~  147 (445)
                          .++++.|++++ ..++.+|.+|+||||+|+..|+.++++.|++..  +..+|.+|.+|+||||+|+..|+.+++++
T Consensus       215 ~~~~~~i~~lLl~~g-ad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~--~~~vn~~d~~G~TpL~~A~~~g~~~iv~~  291 (337)
T 4g8k_A          215 DSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE--HIEINDTDSDGKTALLLAVELKLKKIAEL  291 (337)
T ss_dssp             TTTHHHHHHHHHHTT-CCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTST--TCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred             cccHHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhc--CCcccCcCCCCCCHHHHHHHcCCHHHHHH
Confidence                35788899988 677889999999999999999999999999752  56799999999999999999999999999


Q ss_pred             HHhcCCCccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCcccC
Q 013339          148 LLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCD  194 (445)
Q Consensus       148 Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~~  194 (445)
                      |+++|+++|.     .+||++    +...++.+++++|+++|+++..
T Consensus       292 Ll~~GAd~n~-----~~~L~~----A~~~~~~~iv~~Ll~~GA~~d~  329 (337)
T 4g8k_A          292 LCKRGASTDC-----GDLVMT----ARRNYDHSLVKVLLSHGAKEDF  329 (337)
T ss_dssp             HHTTSCSSTT-----CCHHHH----HHHTTCHHHHHHHHHTTCCC--
T ss_pred             HHHCCCCCCC-----CCHHHH----HHHcCCHHHHHHHHHCcCCCCC
Confidence            9999999875     469999    4556788999999999998754

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=2.1e-26  Score=213.63  Aligned_cols=163  Identities=21%  Similarity=0.197  Sum_probs=119.2

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHH
Q 013339           23 LNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVK  102 (445)
Q Consensus        23 ~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~  102 (445)
                      ..|.||||.|+..|+.+.++.|+++|++++.  +..|.||||.|+..|+.++++.|++.+. .++.+|..|+||||+|+.
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEVD-DPSLPNDEGITALHNAVC   79 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTS-SCCCCCTTSCCHHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCccc--CchhhHHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHH
Confidence            4699999999999999999999999999864  5789999999999999999999999985 788889999999999999


Q ss_pred             cCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCC-CHHHHHhhhccccchhcH
Q 013339          103 NNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGY-TALDVVESDASNSGALQI  181 (445)
Q Consensus       103 ~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~-Tpl~~a~~~a~~~~~~~i  181 (445)
                      +|+.+++++|+++   +.++|.+|.+|+||||+|+..++.+++++|+++|++++..|..|. ||++++.  +...++.++
T Consensus        80 ~g~~~~v~~Ll~~---ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~--~~~~g~~~~  154 (239)
T 1ycs_B           80 AGHTEIVKFLVQF---GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCE--EMEEGYTQC  154 (239)
T ss_dssp             HTCHHHHHHHHHH---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCC--SSSTTCCCH
T ss_pred             cCCHHHHHHHHHc---CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHH--HhhhccHHH
Confidence            9999999999998   788999999999999999999999999999999999999998887 9999841  256678999


Q ss_pred             HHHHHHhcCccc
Q 013339          182 VPALEEAGARRC  193 (445)
Q Consensus       182 ~~~L~~~ga~~~  193 (445)
                      +++|++.|++..
T Consensus       155 ~~~Ll~~~a~~~  166 (239)
T 1ycs_B          155 SQFLYGVQEKMG  166 (239)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHhhhccc
Confidence            999999988754

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.93  E-value=1.5e-25  Score=192.84  Aligned_cols=140  Identities=25%  Similarity=0.353  Sum_probs=131.1

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |..++++.|++.++++.  .|..|.||||+|+..|+.++++.|++.|++++. +|..|+||||+|+..|+.+++++|+++
T Consensus        13 g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~   89 (153)
T 1awc_B           13 GQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA-RTKVDRTPLHMAASEGHANIVEVLLKH   89 (153)
T ss_dssp             TCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             CCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcChHHHHHHHHHc
Confidence            57899999999988764  588999999999999999999999999999876 899999999999999999999999999


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHH
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYL  148 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~L  148 (445)
                      + ..++.+|..|+||||+|+.+|+.+++++|+++   +..++.+|.+|.||||+|+..++.+++++|
T Consensus        90 g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           90 G-ADVNAKDMLKMTALHWATEHNHQEVVELLIKY---GADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             T-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             C-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            7 56788899999999999999999999999998   778999999999999999999999999887

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.93  E-value=1.2e-25  Score=196.31  Aligned_cols=148  Identities=20%  Similarity=0.236  Sum_probs=137.5

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |..++++.|++.+.+++ ..|..|.||||+|+..|+.++++.|+++|++++. .|..|.||||+|+..|+.+++++|++.
T Consensus        14 g~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~   91 (167)
T 3v31_A           14 GEMLYLATRIEQENVIN-HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-LGKGRESALSLACSKGYTDIVKMLLDC   91 (167)
T ss_dssp             TCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHHcCCHHHHHHHHHC
Confidence            57899999999987765 7899999999999999999999999999999876 899999999999999999999999999


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCc
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDV  155 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~  155 (445)
                      + ..++.+|..|.||||+|+..|+.+++++|+++   +..++.+|.+|.||||+|+..++.+++++|++++.++
T Consensus        92 g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (167)
T 3v31_A           92 G-VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES---GADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL  161 (167)
T ss_dssp             T-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             C-CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            8 56778899999999999999999999999997   7788999999999999999999999999999876554

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.93  E-value=3.2e-26  Score=214.19  Aligned_cols=165  Identities=24%  Similarity=0.293  Sum_probs=142.5

Q ss_pred             CCChHHHHHHHcCCHH----HHHHHhhcCCCCCC---CCCCCCccHHHHHHHc---CCHHHHHHHHhcCCCccc------
Q 013339           24 NGHTPLHLSCSKGHLE----ITRELLKLDPDLSS---LPDNEGRTPLHWAAIK---GRINIIDEILSLNLQSAE------   87 (445)
Q Consensus        24 ~G~TpLH~Aa~~g~~~----iv~~LL~~~~~~~~---~~d~~G~TpLh~Aa~~---G~~~iv~~Ll~~~~~~~~------   87 (445)
                      .|+||||+||..|+.+    ++++|++.|.+++.   .+|.+|+||||+|+..   |+.+++++|++.+.....      
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            4899999999999997    56777778999875   4799999999999999   999999999998743221      


Q ss_pred             ----cccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCC-------------CCcHHHHHHhCCcHHHHHHHHh
Q 013339           88 ----MRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDND-------------GNTILHLATAGKLTTMVIYLLK  150 (445)
Q Consensus        88 ----~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~-------------g~T~LHlA~~~~~~~iv~~Ll~  150 (445)
                          ..|..|.||||+|+..|+.+++++|+++   +..+|.+|..             |.||||+|+..++.+++++|++
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~---ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~  157 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN---GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE  157 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHc---CCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence                2346799999999999999999999998   6778888876             9999999999999999999999


Q ss_pred             ---cCCCccccccCCCCHHHHHhhhccccchhc-------HHHHHHHhcCccc
Q 013339          151 ---LGVDVNAINRKGYTALDVVESDASNSGALQ-------IVPALEEAGARRC  193 (445)
Q Consensus       151 ---~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~-------i~~~L~~~ga~~~  193 (445)
                         .|++++.+|..|+||||+|....  .++.+       ++++|++.|++..
T Consensus       158 ~~~~ga~~n~~d~~g~TpLh~A~~~~--~~~~~~~~~~~~iv~~Ll~~ga~~~  208 (256)
T 2etb_A          158 NPHQPASLEATDSLGNTVLHALVMIA--DNSPENSALVIHMYDGLLQMGARLC  208 (256)
T ss_dssp             CSSCCCCTTCCCTTSCCHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ccccCCCcCccCCCCCCHHHHHHHcc--cCCchhhHHHHHHHHHHHHcCCCcc
Confidence               99999999999999999975422  34444       9999999998763

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=7.4e-26  Score=197.17  Aligned_cols=146  Identities=22%  Similarity=0.268  Sum_probs=134.0

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |..++++.|++..+......|..|+||||+|+..|+.+++++|+++|++++. +|.+|+||||+|+..|+.+++++|++.
T Consensus        19 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~   97 (165)
T 3twr_A           19 GDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA-KDKGGLVPLHNACSYGHYEVAELLVKH   97 (165)
T ss_dssp             TCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCc-cCCCCCCHHHHHHHcCcHHHHHHHHhC
Confidence            5689999999987776678889999999999999999999999999999976 899999999999999999999999999


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCC
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGV  153 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~  153 (445)
                      + ...+.+|..|+||||+|+.+|+.+++++|+++   +..++.+|.+|.||||+|+. ++.+++++|+++|+
T Consensus        98 g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A           98 G-AVVNVADLWKFTPLHEAAAKGKYEICKLLLQH---GADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             T-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             C-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            8 56788899999999999999999999999998   77899999999999999776 88999999998875

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.93  E-value=1.6e-25  Score=200.08  Aligned_cols=145  Identities=24%  Similarity=0.317  Sum_probs=135.3

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |..++++.|++.+.+++ ..|..|+||||+|+..|+.+++++|++.|++++. +|..|.||||+|+..|+.+++++|++.
T Consensus        46 g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~  123 (192)
T 2rfm_A           46 GMENAIDKLVENFDKLE-DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT-KDFSGKTPLMWSIIFGYSEMSYFLLEH  123 (192)
T ss_dssp             TCGGGHHHHHHHHCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHhccccc-cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHC
Confidence            56789999999988766 7788999999999999999999999999999876 899999999999999999999999999


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcC
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG  152 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g  152 (445)
                      + ..++.+|..|.||||+|+..|+.+++++|+++   +..++.+|.+|.||||+|+..++.+++++|++.|
T Consensus       124 g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          124 G-ANVNDRNLEGETPLIVASKYGRSEIVKKLLEL---GADISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             T-CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT---TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             C-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            8 56788899999999999999999999999998   7789999999999999999999999999999654

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.93  E-value=1.8e-25  Score=211.19  Aligned_cols=160  Identities=19%  Similarity=0.266  Sum_probs=132.0

Q ss_pred             CHHHHHHHHHHhchhh-------h---cCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCC--------------
Q 013339            2 HVADIVKELLEARQEF-------A---WKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDN--------------   57 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~-------~---~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~--------------   57 (445)
                      ++.|+++.|++.+.+.       +   ...|..|+||||+|+..|+.++|++|+++|++++. ++.              
T Consensus        68 g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~~~~~~~~~~~~~  146 (273)
T 2pnn_A           68 GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA-AANGDFFKKTKGRPGFY  146 (273)
T ss_dssp             TBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBCSGGGSSCSSSCCCC
T ss_pred             CChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc-ccccccccccccccccc
Confidence            6789999999998653       2   12567899999999999999999999999999976 565              


Q ss_pred             CCccHHHHHHHcCCHHHHHHHHh---cCCCccccccccCcchHhHHHHcCC---------HHHHHHHHHhcCcccccC--
Q 013339           58 EGRTPLHWAAIKGRINIIDEILS---LNLQSAEMRTIHGETVLHLTVKNNQ---------YEAVKYLMETLNITKLAN--  123 (445)
Q Consensus        58 ~G~TpLh~Aa~~G~~~iv~~Ll~---~~~~~~~~~~~~g~t~Lh~A~~~g~---------~~~v~~Ll~~~~~~~~~n--  123 (445)
                      .|.||||+|+..|+.+++++|++   .+ ..++.+|.+|+||||+|+..|+         .+++++|++.   +..+|  
T Consensus       147 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~g-ad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~---ga~~n~~  222 (273)
T 2pnn_A          147 FGELPLSLAACTNQLAIVKFLLQNSWQP-ADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL---GAKLHPT  222 (273)
T ss_dssp             SCBSHHHHHHHTTCHHHHHHHHHCSSCC-CCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH---HHHHCTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcccCC-CCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh---hhhcccc
Confidence            79999999999999999999999   55 6788899999999999999998         7999999988   56665  


Q ss_pred             -----CCCCCCCcHHHHHHhCCcHHHHHHHHhcCC-CccccccCCCCHH
Q 013339          124 -----MPDNDGNTILHLATAGKLTTMVIYLLKLGV-DVNAINRKGYTAL  166 (445)
Q Consensus       124 -----~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~-~~~~~n~~G~Tpl  166 (445)
                           .+|.+|+||||+|+..++.+++++|+++|+ ++......+.+|-
T Consensus       223 ~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          223 LKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHH  271 (273)
T ss_dssp             CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-------------
T ss_pred             cccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence                 589999999999999999999999999999 7877777666654

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=7.8e-26  Score=190.82  Aligned_cols=130  Identities=16%  Similarity=0.190  Sum_probs=118.4

Q ss_pred             cCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccc-CcchH
Q 013339           19 WKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIH-GETVL   97 (445)
Q Consensus        19 ~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~-g~t~L   97 (445)
                      +..|..|.||||+|+..|+.++++.|+++|++++. +|..|+||||+|+. |+.+++++|++.+ ..++.+|.. |+|||
T Consensus         6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~-~~~~~v~~Ll~~g-~~~~~~~~~~g~t~L   82 (136)
T 1d9s_A            6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNA-LNRFGRRPIQVMMM-GSAQVAELLLLHG-AEPNCADPATLTRPV   82 (136)
T ss_dssp             SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCTTTTTSTT-SCHHHHHHHHHHT-CCSSCCBTTTTBCHH
T ss_pred             cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCC-cCCCCCCHHHHHHc-CCHHHHHHHHHCC-CCCCCcCCCCCCCHH
Confidence            36788999999999999999999999999999876 78999999999999 9999999999988 567778888 99999


Q ss_pred             hHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCC
Q 013339           98 HLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVD  154 (445)
Q Consensus        98 h~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~  154 (445)
                      |+|+..|+.+++++|++.   +..++.+|.+|.||||+|+..++.+++++|+++|+|
T Consensus        83 ~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           83 HDAAREGFLDTLVVLHRA---GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHT---CCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHcCCHHHHHHHHHc---CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999987   678899999999999999999999999999988875

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=5e-25  Score=189.93  Aligned_cols=143  Identities=23%  Similarity=0.242  Sum_probs=131.1

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |..++++.|++..+...+..|..|+||||+ |..|+.++++.|+++|++++. +|..|.||||+|+..|+.++++.|++.
T Consensus        13 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~   90 (156)
T 1bd8_A           13 GDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNV-QDTSGTSPVHDAARTGFLDTLKVLVEH   90 (156)
T ss_dssp             TCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence            578999999999433445789999999999 999999999999999999976 899999999999999999999999999


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhc
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKL  151 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~  151 (445)
                      + ..++.+|..|+||||+|+.+|+.+++++|++.    ..++.+|.+|.||||+|+..++.+++++|+++
T Consensus        91 g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           91 G-ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE----SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             T-CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT----SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             C-CCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc----cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            8 67788899999999999999999999999986    46888999999999999999999999999864

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.92  E-value=4.6e-26  Score=210.07  Aligned_cols=157  Identities=22%  Similarity=0.218  Sum_probs=136.8

Q ss_pred             HHHHHHhchhhh--cCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCC
Q 013339            7 VKELLEARQEFA--WKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQ   84 (445)
Q Consensus         7 v~~Ll~~~~~~~--~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~   84 (445)
                      ++.|++.+.+..  ...+.+|.||||+||..|+.++++.|++.|++++. +|..|+||||+|+..|+.+++++|++.+ .
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-a   78 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQ-PNEEGITALHNAICGANYSIVDFLITAG-A   78 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-C
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCC-C
Confidence            467788776644  46677889999999999999999999999999976 8999999999999999999999999998 5


Q ss_pred             ccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCC-CCCCcHHHHH--HhCCcHHHHHHHHhcCCCccccccC
Q 013339           85 SAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPD-NDGNTILHLA--TAGKLTTMVIYLLKLGVDVNAINRK  161 (445)
Q Consensus        85 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d-~~g~T~LHlA--~~~~~~~iv~~Ll~~g~~~~~~n~~  161 (445)
                      .++.+|..|+||||+|+..|+.+++++|++.   +..++.+| .+|.||||+|  +..++.+++++|++.|++++..|..
T Consensus        79 ~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~---ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~  155 (229)
T 2vge_A           79 NVNSPDSHGWTPLHCAASCNDTVICMALVQH---GAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSG  155 (229)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT---TCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGG
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCC
Confidence            7788899999999999999999999999987   77888886 6999999999  9999999999999999999999999


Q ss_pred             CCCHHHH
Q 013339          162 GYTALDV  168 (445)
Q Consensus       162 G~Tpl~~  168 (445)
                      |.||++.
T Consensus       156 ~~~~l~~  162 (229)
T 2vge_A          156 AVYALWD  162 (229)
T ss_dssp             EEEESSC
T ss_pred             chHHHHH
Confidence            9999875

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=3e-24  Score=177.51  Aligned_cols=126  Identities=38%  Similarity=0.612  Sum_probs=118.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHc
Q 013339           24 NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKN  103 (445)
Q Consensus        24 ~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~  103 (445)
                      +|+||||+|+..|+.++++.|++++++++. .|..|.||||+|+..|+.+++++|++.+ ...+.+|..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCcHHHHHHHc
Confidence            589999999999999999999999999876 7999999999999999999999999987 56778888999999999999


Q ss_pred             CCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCC
Q 013339          104 NQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVD  154 (445)
Q Consensus       104 g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~  154 (445)
                      |+.+++++|+++   +..++.+|.+|+||||+|+..++.+++++|+++|++
T Consensus        79 ~~~~~~~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           79 GHLEVVKLLLEA---GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             ChHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            999999999997   777899999999999999999999999999999875

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=2.2e-24  Score=181.83  Aligned_cols=128  Identities=22%  Similarity=0.254  Sum_probs=117.0

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhH
Q 013339           20 KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHL   99 (445)
Q Consensus        20 ~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~   99 (445)
                      .....|.||||+||..|+.++++.|+++|++++. +|..|+||||+|+..|+.++++.|++.+ ..++..|..|.||||+
T Consensus         9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~   86 (136)
T 2jab_A            9 HHGSDLGKKLLEAARAGQDDEVRILMANGADVNA-KDEYGLTPLYLATAHGHLEIVEVLLKNG-ADVNAVDAIGFTPLHL   86 (136)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHH
T ss_pred             cccccccHHHHHHHHhCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHH
Confidence            4456789999999999999999999999999876 8999999999999999999999999997 5677888999999999


Q ss_pred             HHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcC
Q 013339          100 TVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG  152 (445)
Q Consensus       100 A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g  152 (445)
                      |+..|+.+++++|+++   +..++.+|.+|+||||+|+..++.+++++|++.|
T Consensus        87 A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           87 AAFIGHLEIAEVLLKH---GADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHcCCHHHHHHHHHc---CCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999998   7788999999999999999999999999999875

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.91  E-value=4e-25  Score=207.09  Aligned_cols=169  Identities=21%  Similarity=0.203  Sum_probs=142.3

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhh----cCCCCCCC---CCCCCccHHHHHH---HcCCHHHHHHHHhcCCC-------
Q 013339           22 DLNGHTPLHLSCSKGHLEITRELLK----LDPDLSSL---PDNEGRTPLHWAA---IKGRINIIDEILSLNLQ-------   84 (445)
Q Consensus        22 d~~G~TpLH~Aa~~g~~~iv~~LL~----~~~~~~~~---~d~~G~TpLh~Aa---~~G~~~iv~~Ll~~~~~-------   84 (445)
                      +..|+||||.||+.|+.+.++.|++    .+++++..   .|..|+||||+|+   ..|+.++++.|++.+..       
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   81 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF   81 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence            5679999999999999996555555    88888642   2477999999999   67999999999998642       


Q ss_pred             ---ccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCC--------------CCCCcHHHHHHhCCcHHHHHH
Q 013339           85 ---SAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPD--------------NDGNTILHLATAGKLTTMVIY  147 (445)
Q Consensus        85 ---~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d--------------~~g~T~LHlA~~~~~~~iv~~  147 (445)
                         .....|..|+||||+|+..|+.+++++|++.   +..+|.+|              ..|.||||+|+..++.+++++
T Consensus        82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~---ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  158 (260)
T 3jxi_A           82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEK---GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY  158 (260)
T ss_dssp             HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHH
T ss_pred             hcccccccccCCCCHHHHHHHcCCHHHHHHHHhC---CCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHH
Confidence               2344556899999999999999999999997   77788888              689999999999999999999


Q ss_pred             HHh---cCCCccccccCCCCHHHHHhhhccccc-----hhcHHHHHHHhcCccc
Q 013339          148 LLK---LGVDVNAINRKGYTALDVVESDASNSG-----ALQIVPALEEAGARRC  193 (445)
Q Consensus       148 Ll~---~g~~~~~~n~~G~Tpl~~a~~~a~~~~-----~~~i~~~L~~~ga~~~  193 (445)
                      |++   .|++++.+|..|+||||+|........     ..+++++|++.|++..
T Consensus       159 Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~  212 (260)
T 3jxi_A          159 LTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLF  212 (260)
T ss_dssp             HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccc
Confidence            999   999999999999999999765433211     1579999999998763

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.91  E-value=2.3e-26  Score=212.11  Aligned_cols=169  Identities=18%  Similarity=0.169  Sum_probs=147.2

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |..|+++.|++.+.+++ ..|..|+||||+||..|+.+++++|++.|++++. +|..|+||||+|+..|+.+++++|++.
T Consensus        32 g~~~~v~~Ll~~g~~~~-~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~-~d~~g~tpLh~A~~~g~~~~v~~Ll~~  109 (229)
T 2vge_A           32 GELEVVQQAVKEMNDPS-QPNEEGITALHNAICGANYSIVDFLITAGANVNS-PDSHGWTPLHCAASCNDTVICMALVQH  109 (229)
T ss_dssp             TCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CCHHHHHHHHhcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            57899999999998876 7899999999999999999999999999999977 899999999999999999999999999


Q ss_pred             CCCccccc-cccCcchHhHH--HHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCC--cc
Q 013339           82 NLQSAEMR-TIHGETVLHLT--VKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVD--VN  156 (445)
Q Consensus        82 ~~~~~~~~-~~~g~t~Lh~A--~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~--~~  156 (445)
                      +. .++.. +.+|+||||+|  +..|+.+++++|++.   +..++.+|..|.|++|.++....   .++|++.|++  ++
T Consensus       110 ga-~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~---ga~~~~~~~~~~~~l~~~~~~~~---~~~ll~~ga~~~~~  182 (229)
T 2vge_A          110 GA-AIFATTLSDGATAFEKCDPYREGYADCATYLADV---EQSMGLMNSGAVYALWDYSAEFG---DELSFREGESVTVL  182 (229)
T ss_dssp             TC-CTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH---HHHTTTSGGGEEEESSCBCCSST---TBCCBCTTCEEEEE
T ss_pred             CC-CcccccCCCCCCHHHHHHHHhcChHHHHHHHHHc---CCCcccccCCchHHHHHHhhccc---cccCcccccccccc
Confidence            85 44555 46999999999  999999999999998   77899999999999997655443   3567788988  77


Q ss_pred             ccccCCCCHHHHHhhhccccchhcHHH
Q 013339          157 AINRKGYTALDVVESDASNSGALQIVP  183 (445)
Q Consensus       157 ~~n~~G~Tpl~~a~~~a~~~~~~~i~~  183 (445)
                      .+|..|.|||++    |...++.++++
T Consensus       183 ~~d~~G~TpL~~----A~~~g~~~~v~  205 (229)
T 2vge_A          183 RRDGPEETDWWW----AALHGQEGYVP  205 (229)
T ss_dssp             ESSCTTCSSEEE----EEETTEEEEEE
T ss_pred             ccCCCcccHHHH----HHHcCCcceee
Confidence            889999999999    55556655553

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.91  E-value=6.1e-25  Score=203.74  Aligned_cols=153  Identities=18%  Similarity=0.188  Sum_probs=123.0

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      +..+.++.|++.+.++.  .+..|.||||+|+..|+.++++.|++.|++++. +|..|+||||+|+..|+.+++++|+++
T Consensus        16 ~~~~~~~~ll~~g~~~~--~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~   92 (239)
T 1ycs_B           16 NLRKTGSERIAHGMRVK--FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSL-PNDEGITALHNAVCAGHTEIVKFLVQF   92 (239)
T ss_dssp             -----------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCC-CCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             hhHHHHHHHhccCCCcc--cCchhhHHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            56788999999998876  346799999999999999999999999999876 899999999999999999999999999


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCC-cHHHHH--HhCCcHHHHHHHHhcCCCcccc
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGN-TILHLA--TAGKLTTMVIYLLKLGVDVNAI  158 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~-T~LHlA--~~~~~~~iv~~Ll~~g~~~~~~  158 (445)
                      + ..++.+|..|+||||+|+.+|+.+++++|+++   +..++.+|..|. ||||+|  +..++.+++++|++.|++++..
T Consensus        93 g-a~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~  168 (239)
T 1ycs_B           93 G-VNVNAADSDGWTPLHCAASCNNVQVCKFLVES---GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIM  168 (239)
T ss_dssp             T-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTT
T ss_pred             C-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhccccc
Confidence            7 56788999999999999999999999999998   788899998887 999999  7889999999999999998877


Q ss_pred             ccC
Q 013339          159 NRK  161 (445)
Q Consensus       159 n~~  161 (445)
                      |..
T Consensus       169 ~~~  171 (239)
T 1ycs_B          169 NKG  171 (239)
T ss_dssp             GGG
T ss_pred             ccc
Confidence            544

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.91  E-value=1.6e-24  Score=210.58  Aligned_cols=185  Identities=21%  Similarity=0.258  Sum_probs=149.5

Q ss_pred             CHHHHHHHHHHhchhhhcC----------------CCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHH
Q 013339            2 HVADIVKELLEARQEFAWK----------------KDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHW   65 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~----------------~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~   65 (445)
                      |+.++++.|++++.+....                ......+.+|+|+..+..++++.|++.|.+++..+|.+|+||||+
T Consensus        58 g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~  137 (327)
T 1sw6_A           58 EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHW  137 (327)
T ss_dssp             HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHH
T ss_pred             chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHH
Confidence            4689999999998553320                111223346899999999999999999999977579999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCC---HHHHHHHHHhcCcccccCCCCCCCCcHHHHHHh----
Q 013339           66 AAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQ---YEAVKYLMETLNITKLANMPDNDGNTILHLATA----  138 (445)
Q Consensus        66 Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~---~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~----  138 (445)
                      ||..|+.+++++|++++ ..++.+|.+|+||||+|+.+|+   .++++.|++..  ...++.+|.+|+||||+|+.    
T Consensus       138 Aa~~g~~~~v~~Ll~~G-ad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~--~~~~~~~d~~g~tpLh~A~~~~~~  214 (327)
T 1sw6_A          138 LTSIANLELVKHLVKHG-SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL--YPCLILEDSMNRTILHHIIITSGM  214 (327)
T ss_dssp             HHHTTCHHHHHHHHHTT-CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHH--GGGGGEECTTCCCHHHHHHHHHTS
T ss_pred             HHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhh--hccccCCCCCCCCHHHHHHHHccc
Confidence            99999999999999998 6778899999999999999998   67778887763  24688999999999999999    


Q ss_pred             CCcHHHHHHHHhcCC---------------------------------------------CccccccCCCCHHHHHhhhc
Q 013339          139 GKLTTMVIYLLKLGV---------------------------------------------DVNAINRKGYTALDVVESDA  173 (445)
Q Consensus       139 ~~~~~iv~~Ll~~g~---------------------------------------------~~~~~n~~G~Tpl~~a~~~a  173 (445)
                      .++.+++++|++.+.                                             +++.+|..|+||||+    +
T Consensus       215 ~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~----A  290 (327)
T 1sw6_A          215 TGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNI----A  290 (327)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHH----H
T ss_pred             cccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHH----H
Confidence            899999999987632                                             577888899999999    4


Q ss_pred             cccchhcHHHHHHHhcCccc
Q 013339          174 SNSGALQIVPALEEAGARRC  193 (445)
Q Consensus       174 ~~~~~~~i~~~L~~~ga~~~  193 (445)
                      ...++.+++++|+++|++..
T Consensus       291 ~~~g~~~~v~~Ll~~Gad~~  310 (327)
T 1sw6_A          291 ARLGNISIVDALLDYGADPF  310 (327)
T ss_dssp             HHHCCHHHHHHHHHTTCCTT
T ss_pred             HHcCCHHHHHHHHHcCCCCc
Confidence            55678899999999998754

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.90  E-value=5.3e-24  Score=179.53  Aligned_cols=133  Identities=15%  Similarity=0.221  Sum_probs=122.6

Q ss_pred             CCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCC
Q 013339           49 PDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDND  128 (445)
Q Consensus        49 ~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~  128 (445)
                      ++++. +|..|.||||+|+..|+.+++++|++.+ ..++.+|..|+||||+|+. |+.+++++|+++   +..++.+|..
T Consensus         3 ~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~---g~~~~~~~~~   76 (136)
T 1d9s_A            3 PGIHM-LGGSSDAGLATAAARGQVETVRQLLEAG-ADPNALNRFGRRPIQVMMM-GSAQVAELLLLH---GAEPNCADPA   76 (136)
T ss_dssp             CCCSC-CCCCCSCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHH---TCCSSCCBTT
T ss_pred             CCccC-CCCCCccHHHHHHHcCCHHHHHHHHHcC-CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHC---CCCCCCcCCC
Confidence            45544 8999999999999999999999999997 5678889999999999999 999999999998   7789999999


Q ss_pred             -CCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCc
Q 013339          129 -GNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGAR  191 (445)
Q Consensus       129 -g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~  191 (445)
                       |+||||+|+..++.+++++|++.|++++..|..|.||+++|    ...++.+++++|+++|++
T Consensus        77 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A----~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           77 TLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLA----EEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             TTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHH----HHHTCHHHHHHHHHHHCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH----HHcCCHHHHHHHHHcCCC
Confidence             99999999999999999999999999999999999999994    456778999999999874

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.90  E-value=7.7e-25  Score=195.20  Aligned_cols=155  Identities=12%  Similarity=0.040  Sum_probs=133.8

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhcCCCCCCCCC-CCCccHHHHHHHcCCH----HHHHHHHhcCCCccccccccCcchHhH
Q 013339           25 GHTPLHLSCSKGHLEITRELLKLDPDLSSLPD-NEGRTPLHWAAIKGRI----NIIDEILSLNLQSAEMRTIHGETVLHL   99 (445)
Q Consensus        25 G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d-~~G~TpLh~Aa~~G~~----~iv~~Ll~~~~~~~~~~~~~g~t~Lh~   99 (445)
                      +.++||.||+.|+.+.++.+++.+.+.   .+ ..|+||||+|+..|+.    +++++|+++| .+++.+|..|+||||+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~---~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~G-advn~~d~~g~TpLh~   81 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED---KESVLKSNILYDVLRNNNDEARYKISMFLINKG-ADIKSRTKEGTTLFFP   81 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC---HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTT-CCSSCCCTTCCCTHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc---ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCC-CCCCCCCCCCCcHHHH
Confidence            568899999999999999999887543   34 7799999999999975    5899999988 6788889999999999


Q ss_pred             HHHcCC------HHHHHHHHHhcCcccccCCCCCCCC-cHHHHHHhCC-----cHHHHHHHHh-cCCCccccccCCCCHH
Q 013339          100 TVKNNQ------YEAVKYLMETLNITKLANMPDNDGN-TILHLATAGK-----LTTMVIYLLK-LGVDVNAINRKGYTAL  166 (445)
Q Consensus       100 A~~~g~------~~~v~~Ll~~~~~~~~~n~~d~~g~-T~LHlA~~~~-----~~~iv~~Ll~-~g~~~~~~n~~G~Tpl  166 (445)
                      |+..|+      .+++++|+++   ++++|.+|.+|+ ||||+|+..+     +.+++++|++ +|++++.+|..|.|||
T Consensus        82 a~~~~~~~~~~~~~iv~~Ll~~---Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL  158 (186)
T 3t8k_A           82 LFQGGGNDITGTTELCKIFLEK---GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL  158 (186)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHT---TCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHH
T ss_pred             HHHcCCcchhhHHHHHHHHHHC---CCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHH
Confidence            999887      5789999988   888999999999 9999999854     4568999998 9999999999999999


Q ss_pred             HHHhhhccccchhcHHHHHHHhcC
Q 013339          167 DVVESDASNSGALQIVPALEEAGA  190 (445)
Q Consensus       167 ~~a~~~a~~~~~~~i~~~L~~~ga  190 (445)
                      |+    +...++.+++++|.+...
T Consensus       159 ~~----A~~~~~~~~v~~L~~~~~  178 (186)
T 3t8k_A          159 EF----VKRCQKPIALKMMEDYIK  178 (186)
T ss_dssp             HH----HHTTTCHHHHHHHHHHHH
T ss_pred             HH----HHHcCCHHHHHHHHHHHH
Confidence            99    556677788888887654

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.90  E-value=2.9e-24  Score=191.44  Aligned_cols=151  Identities=14%  Similarity=0.017  Sum_probs=129.8

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCH----HHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCC------
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHL----EITRELLKLDPDLSSLPDNEGRTPLHWAAIKGR------   71 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~----~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~------   71 (445)
                      |..+.++.+++.+++..  .|..|+||||+|+..|+.    +++++||++|++++. +|.+|+||||+|+..|+      
T Consensus        17 g~~~~~~~l~~~~~~~~--~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~-~d~~g~TpLh~a~~~~~~~~~~~   93 (186)
T 3t8k_A           17 GTYEDFLELFEKGYEDK--ESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS-RTKEGTTLFFPLFQGGGNDITGT   93 (186)
T ss_dssp             SCHHHHHHHHHHSSSCH--HHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSC-CCTTCCCTHHHHHHHCTTCHHHH
T ss_pred             CCHHHHHHHHhcCcccc--cccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHcCCcchhhH
Confidence            55677888887765432  236799999999999985    599999999999987 89999999999999997      


Q ss_pred             HHHHHHHHhcCCCccccccccCc-chHhHHHHcC-----CHHHHHHHHH-hcCcccccCCCCCCCCcHHHHHHhCCcHHH
Q 013339           72 INIIDEILSLNLQSAEMRTIHGE-TVLHLTVKNN-----QYEAVKYLME-TLNITKLANMPDNDGNTILHLATAGKLTTM  144 (445)
Q Consensus        72 ~~iv~~Ll~~~~~~~~~~~~~g~-t~Lh~A~~~g-----~~~~v~~Ll~-~~~~~~~~n~~d~~g~T~LHlA~~~~~~~i  144 (445)
                      .++++.|+++| .+++.+|..|+ ||||+|+..+     +.+++++|++ .   +.++|.+|.+|.||||+|+..++.++
T Consensus        94 ~~iv~~Ll~~G-adin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~---gad~~~~d~~G~TpL~~A~~~~~~~~  169 (186)
T 3t8k_A           94 TELCKIFLEKG-ADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQS---GLQLLIKDKWGLTALEFVKRCQKPIA  169 (186)
T ss_dssp             HHHHHHHHHTT-CCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTST---TCCTTCCCTTSCCHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHCC-CCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhc---CCCCcccCCCCCCHHHHHHHcCCHHH
Confidence            68899999998 68889999999 9999999954     4579999998 6   78899999999999999999999999


Q ss_pred             HHHHHhcCCCccccc
Q 013339          145 VIYLLKLGVDVNAIN  159 (445)
Q Consensus       145 v~~Ll~~g~~~~~~n  159 (445)
                      +++|.+...+.+.++
T Consensus       170 v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          170 LKMMEDYIKKYNLKE  184 (186)
T ss_dssp             HHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhccc
Confidence            999997765555444

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.90  E-value=1.3e-23  Score=199.26  Aligned_cols=147  Identities=20%  Similarity=0.293  Sum_probs=134.4

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHH-----HcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHH
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSC-----SKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIID   76 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa-----~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~   76 (445)
                      |+.++++.|++.++...+..|..|.||||+|+     ..|+.++++.|++.|.+... .|..|+||||+|+..|+.++++
T Consensus       122 g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~-~~~~g~tpLh~A~~~g~~~~v~  200 (276)
T 4hbd_A          122 ANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAK-ASQAGQTALMLAVSHGRVDVVK  200 (276)
T ss_dssp             TCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCC-CTTTCCCHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccc-cCCCCCCHHHHHHHcCCHHHHH
Confidence            67899999999998555588999999999999     67899999999999977765 7889999999999999999999


Q ss_pred             HHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcC
Q 013339           77 EILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG  152 (445)
Q Consensus        77 ~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g  152 (445)
                      .|++.+ .+++.+|.+|+||||+|+..|+.+++++|++.  .+.+++.+|.+|+||||+|+..++.+++++|++++
T Consensus       201 ~Ll~~g-ad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~--~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          201 ALLACE-ADVNVQDDDGSTALMCACEHGHKEIAGLLLAV--PSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTS--TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHHhCC-CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhc--CCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            999998 57888999999999999999999999999982  17789999999999999999999999999999653

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=4.8e-24  Score=195.15  Aligned_cols=140  Identities=19%  Similarity=0.270  Sum_probs=114.7

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhH
Q 013339           20 KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHL   99 (445)
Q Consensus        20 ~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~   99 (445)
                      ..|.+|.||||+||..|+.++++.|++.|++++. +|..|+||||+|+..|+.+++++|++.+...++.+|..|+||||+
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~  146 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG-LDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHA  146 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHH
T ss_pred             ccccccccccccccccCcHHHHHHHHhCCCCccc-cCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHH
Confidence            4567789999999999999999999999999876 899999999999999999999999998557888899999999999


Q ss_pred             HHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCC
Q 013339          100 TVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGY  163 (445)
Q Consensus       100 A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~  163 (445)
                      |+..|+.+++++|+++   +..++.+|.+|.||||+|+..++.++++.|++.++..+..|.+|+
T Consensus       147 A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~  207 (222)
T 3ehr_A          147 AAWKGYADIVQLLLAK---GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDY  207 (222)
T ss_dssp             HHHHTCHHHHHHHHHH---TCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             HHHcCCHHHHHHHHHc---CCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhhh
Confidence            9999999999999998   778899999999999999999999999999999999888776654

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=8.8e-24  Score=178.24  Aligned_cols=125  Identities=22%  Similarity=0.304  Sum_probs=81.9

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhH
Q 013339           20 KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHL   99 (445)
Q Consensus        20 ~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~   99 (445)
                      ..|..|+||||+|+..|+.++++.|++.|++++. +|..|+||||+|+..|+.+++++|++.+ ...+.+|..|+||||+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~   82 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV-KDHAGWTPLHEACNHGHLKVVELLLQHK-ALVNTTGYQNDSPLHD   82 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCGGGCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CcccCcCCCCCCHHHH
Confidence            4566777777777777777777777777777654 6677777777777777777777777765 3455556666666666


Q ss_pred             HHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHH
Q 013339          100 TVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLL  149 (445)
Q Consensus       100 A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll  149 (445)
                      |+..|+.+++++|++.   +..++.+|.+|.||||+|+..+..+++++|.
T Consensus        83 A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~  129 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLSY---GASRNAVNIFGLRPVDYTDDESMKSLLLLPE  129 (137)
T ss_dssp             HHHTTCHHHHHHHHHT---TCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-
T ss_pred             HHHcCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHhhccHHHHHhhcc
Confidence            6666666666666655   4555666666666666666555555554443

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=4.1e-23  Score=174.09  Aligned_cols=132  Identities=24%  Similarity=0.338  Sum_probs=115.6

Q ss_pred             CCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCC
Q 013339           48 DPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDN  127 (445)
Q Consensus        48 ~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~  127 (445)
                      |.|+  .+|.+|+||||+|+..|+.+++++|++.+ ...+.+|..|+||||+|+..|+.+++++|+++   +..++.+|.
T Consensus         1 G~d~--~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~   74 (137)
T 3c5r_A            1 GIDP--FTNHRGETLLHIASIKGDIPSVEYLLQNG-SDPNVKDHAGWTPLHEACNHGHLKVVELLLQH---KALVNTTGY   74 (137)
T ss_dssp             ---C--CCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCG
T ss_pred             CCCC--CcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCcccCcCC
Confidence            3444  47999999999999999999999999987 56778899999999999999999999999998   778999999


Q ss_pred             CCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHHHHHhc
Q 013339          128 DGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAG  189 (445)
Q Consensus       128 ~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~g  189 (445)
                      +|+||||+|+..++.+++++|++.|++++.+|..|.||+++    +...+..+++++|.+.+
T Consensus        75 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~----A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           75 QNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDY----TDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             GGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGG----CCCHHHHHHHSCC----
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH----HhhccHHHHHhhccccc
Confidence            99999999999999999999999999999999999999999    66667777777666544

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.88  E-value=2.9e-22  Score=165.43  Aligned_cols=126  Identities=39%  Similarity=0.579  Sum_probs=117.3

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHH
Q 013339           58 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLAT  137 (445)
Q Consensus        58 ~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~  137 (445)
                      +|+||||+|+..|+.+++++|++.+ ...+..+..|.||||+|+..|+.+++++|++.   +..++.+|..|+||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~l~~A~   76 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA---GADVNAKDKNGRTPLHLAA   76 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHc---CCCCcccCCCCCcHHHHHH
Confidence            5899999999999999999999987 46677888999999999999999999999997   6778999999999999999


Q ss_pred             hCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCc
Q 013339          138 AGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGAR  191 (445)
Q Consensus       138 ~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~  191 (445)
                      ..++.+++++|+++|++++..|..|.||+++    +...++.+++++|++.|++
T Consensus        77 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~----A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           77 RNGHLEVVKLLLEAGADVNAKDKNGRTPLHL----AARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH----HHHTTCHHHHHHHHHHTCC
T ss_pred             HcChHHHHHHHHHcCCCCcccCCCCCCHHHH----HHHcCcHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999    5556788999999999974

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=5.6e-23  Score=182.43  Aligned_cols=140  Identities=23%  Similarity=0.236  Sum_probs=122.6

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccc-ccCcchHhHH
Q 013339           22 DLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRT-IHGETVLHLT  100 (445)
Q Consensus        22 d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~-~~g~t~Lh~A  100 (445)
                      |.+|.||||+|+..|+.++++.|++ +.+++. +|..|+||||+|+..|+.+++++|++.+. .++.++ ..|+||||+|
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~-~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~~g~tpL~~A  117 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDA-VDENGRTALLFVAGLGSDKCVRLLAEAGA-DLDHRDMRGGLTALHMA  117 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCSSSSCCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCcCCCCCCCCHHHHH
Confidence            5578999999999999999999999 888876 89999999999999999999999999984 555566 8899999999


Q ss_pred             HHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhc
Q 013339          101 VKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQ  180 (445)
Q Consensus       101 ~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~  180 (445)
                      +..|+.+++++|+++   +..++.+|.+|+||||+|+..++                 ...+.+|+++    +...+..+
T Consensus       118 ~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~~~-----------------~~~~~~~l~~----a~~~~~~~  173 (183)
T 3deo_A          118 AGYVRPEVVEALVEL---GADIEVEDERGLTALELAREILK-----------------TTPKGNPMQF----GRRIGLEK  173 (183)
T ss_dssp             HHTTCHHHHHHHHHH---TCCTTCCCTTSCCHHHHHHHHHH-----------------TCCCCSHHHH----HHHHHHHH
T ss_pred             HhcCcHHHHHHHHHc---CCCCcCCCCCCCCHHHHHHHhcc-----------------CcccccHHHH----HHHcCHHH
Confidence            999999999999998   77899999999999999986321                 2467899999    55667888


Q ss_pred             HHHHHHHh
Q 013339          181 IVPALEEA  188 (445)
Q Consensus       181 i~~~L~~~  188 (445)
                      ++++|.+.
T Consensus       174 i~~~L~~~  181 (183)
T 3deo_A          174 VINVLEGQ  181 (183)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHh
Confidence            99888653

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.88  E-value=1.6e-22  Score=170.39  Aligned_cols=127  Identities=26%  Similarity=0.257  Sum_probs=115.9

Q ss_pred             CCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHH
Q 013339           55 PDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILH  134 (445)
Q Consensus        55 ~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LH  134 (445)
                      ....|.||||+|+..|+.++++.|++.+ ..++.+|..|+||||+|+.+|+.+++++|++.   +..+|.+|.+|+||||
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~d~~g~t~L~   85 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANG-ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN---GADVNAVDAIGFTPLH   85 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCcCCCCCCCHHH
Confidence            4567899999999999999999999998 56788899999999999999999999999998   7789999999999999


Q ss_pred             HHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHHHHHhc
Q 013339          135 LATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAG  189 (445)
Q Consensus       135 lA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~g  189 (445)
                      +|+..++.+++++|+++|++++..|..|.||+++    +...++.+++++|++.|
T Consensus        86 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~----A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           86 LAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDI----SIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH----HHHTTCHHHHHHHHHC-
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHH----HHHCCCHHHHHHHHHcC
Confidence            9999999999999999999999999999999999    55567788999999875

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.88  E-value=1.2e-22  Score=167.92  Aligned_cols=111  Identities=21%  Similarity=0.267  Sum_probs=84.0

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHH
Q 013339           22 DLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTV  101 (445)
Q Consensus        22 d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~  101 (445)
                      +..|.||||+|+..|+.++++.|++.+++++. +|..|+||||+|+..|+.+++++|++.+ ..++.+|..|+||||+|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNR-TLEGGRKPLHYAADCGQLEILEFLLLKG-ADINAPDKHHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTS-CCTTSSCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCc-cCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHH
Confidence            45678888888888888888888888888765 7888888888888888888888888776 456666777777777777


Q ss_pred             HcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHH
Q 013339          102 KNNQYEAVKYLMETLNITKLANMPDNDGNTILHLAT  137 (445)
Q Consensus       102 ~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~  137 (445)
                      ..|+.+++++|+++   +..++.+|.+|.||||+|.
T Consensus        82 ~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           82 YEGHVSCVKLLLSK---GADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             HHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHCC
T ss_pred             HcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHhC
Confidence            77777777777776   5566777777777777773

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.87  E-value=1.6e-22  Score=188.04  Aligned_cols=143  Identities=22%  Similarity=0.221  Sum_probs=125.6

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccc-ccCcchHhHH
Q 013339           22 DLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRT-IHGETVLHLT  100 (445)
Q Consensus        22 d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~-~~g~t~Lh~A  100 (445)
                      +.+|.||||+||..|+.++++.|++ +.+++. +|..|+||||+|+..|+.+++++|++++. .++.++ ..|.||||+|
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~~~~g~t~L~~A  118 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVDA-VDENGRTALLFVAGLGSDKCVRLLAEAGA-DLDHRDMRGGLTALHMA  118 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTC-BCTTSCBHHHHHHHHTCHHHHHHHHHTTC-CTTCCCSSSCCCHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCC-cCCCCCCHHHHHHHCCCHHHHHHHHHcCC-CCCcCCCCCCCCHHHHH
Confidence            3478999999999999999999999 888876 89999999999999999999999999984 555555 7899999999


Q ss_pred             HHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhc
Q 013339          101 VKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQ  180 (445)
Q Consensus       101 ~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~  180 (445)
                      +.+|+.+++++|+++   +..++.+|.+|+||||+|+..                 ..+..+.||+++    +...++.+
T Consensus       119 ~~~g~~~~v~~Ll~~---ga~~~~~d~~g~t~l~~A~~~-----------------~~~~~~~~~l~~----a~~~g~~~  174 (244)
T 3ui2_A          119 AGYVRPEVVEALVEL---GADIEVEDERGLTALELAREI-----------------LKTTPKGNPMQF----GRRIGLEK  174 (244)
T ss_dssp             HHTTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHH-----------------HTTCCCSSHHHH----HHHHHHHH
T ss_pred             HHcCCHHHHHHHHHC---CCCCCCCCCCCCcHHHHHHHH-----------------HhccCCCCHHHH----HHHcChHH
Confidence            999999999999998   788999999999999999852                 123578999999    55667888


Q ss_pred             HHHHHHHhcCc
Q 013339          181 IVPALEEAGAR  191 (445)
Q Consensus       181 i~~~L~~~ga~  191 (445)
                      ++++|.+.+..
T Consensus       175 iv~~L~~~~~~  185 (244)
T 3ui2_A          175 VINVLEGQVFE  185 (244)
T ss_dssp             HHHHHHHHHEE
T ss_pred             HHHHHHHhccc
Confidence            99999987554

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.86  E-value=3.6e-23  Score=204.22  Aligned_cols=157  Identities=14%  Similarity=0.123  Sum_probs=130.5

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHhhcCCCCC--CCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCc--cccccccCcch
Q 013339           21 KDLNGHTPLHLSCSKGHLEITRELLKLDPDLS--SLPDNEGRTPLHWAAIKGRINIIDEILSLNLQS--AEMRTIHGETV   96 (445)
Q Consensus        21 ~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~--~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~--~~~~~~~g~t~   96 (445)
                      .+.+++||||+||..|+.++|+.|++.|+...  ...|..|.||||+||..|+.+++++|++++++.  .+..+.+ .||
T Consensus        88 ~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~Tp  166 (376)
T 2aja_A           88 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHA  166 (376)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHH
T ss_pred             cCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCH
Confidence            35567899999999999999999999987331  124667899999999999999999999998531  2223333 999


Q ss_pred             HhHHHHcCCHHHHHHHHHhcCcccccCC--CCCCCCcHHHHHH-hCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhc
Q 013339           97 LHLTVKNNQYEAVKYLMETLNITKLANM--PDNDGNTILHLAT-AGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDA  173 (445)
Q Consensus        97 Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~--~d~~g~T~LHlA~-~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a  173 (445)
                      ||+|+.+|+.+++++|+++   +..++.  .|.+|.||||+|+ ..|+.+++++|++.|+       .|.||++.    +
T Consensus       167 Lh~Aa~~G~~eiv~~Ll~~---ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~----A  232 (376)
T 2aja_A          167 FRLAAENGHLHVLNRLCEL---APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIH----E  232 (376)
T ss_dssp             HHHHHHTTCHHHHHHHHHS---CGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHC----T
T ss_pred             HHHHHHCCCHHHHHHHHHc---CCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHH----H
Confidence            9999999999999999998   566665  7888999999999 9999999999998764       38899998    7


Q ss_pred             cccchhcHHHHHHHhcCcc
Q 013339          174 SNSGALQIVPALEEAGARR  192 (445)
Q Consensus       174 ~~~~~~~i~~~L~~~ga~~  192 (445)
                      ...++.+++++|++.|+..
T Consensus       233 a~~g~~evv~lL~~~ga~~  251 (376)
T 2aja_A          233 FEYGEKYVNPFIARHVNRL  251 (376)
T ss_dssp             TTTTTTTHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHhcCccc
Confidence            7888999999999998764

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.86  E-value=4.1e-22  Score=171.99  Aligned_cols=131  Identities=16%  Similarity=0.180  Sum_probs=116.0

Q ss_pred             CCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCc-HH
Q 013339           55 PDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNT-IL  133 (445)
Q Consensus        55 ~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T-~L  133 (445)
                      .+..|.||||+|+..|+.+++++|++.+ ..++.+|..|+||||+|+ +|+.+++++|++.   +..+|.+|..|+| ||
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~---g~~~~~~d~~g~ttpL   82 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEAG-ANPNAPNSYGRRPIQVMM-MGSARVAELLLLH---GAEPNCADPATLTRPV   82 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTTT-CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTT---TCCCCCCCTTTCCCHH
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHc---CCCCCCcCCCCCcHHH
Confidence            5778999999999999999999999997 567888999999999985 9999999999987   7789999999999 99


Q ss_pred             HHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCcccC
Q 013339          134 HLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCD  194 (445)
Q Consensus       134 HlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~~  194 (445)
                      |+|+..++.+++++|+++|++++.+|..|.|||++    +...++.+++++|+++|++...
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~----A~~~~~~~~v~~Ll~~ga~~~~  139 (156)
T 1bi7_B           83 HDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL----AEELGHRDVARYLRAAAGGTRG  139 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHH----HHHHTCHHHHHHHSSCC-----
T ss_pred             HHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHH----HHHhCHHHHHHHHHHcCCCCCc
Confidence            99999999999999999999999999999999999    4556778999999999987643

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.86  E-value=1.6e-21  Score=161.15  Aligned_cols=110  Identities=21%  Similarity=0.274  Sum_probs=102.2

Q ss_pred             CCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHH
Q 013339           56 DNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHL  135 (445)
Q Consensus        56 d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHl  135 (445)
                      +..|.||||+|+..|+.++++.|++.+ ..++.+|..|+||||+|+..|+.+++++|++.   +..+|.+|.+|+||||+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~d~~g~tpL~~   79 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKG-EDVNRTLEGGRKPLHYAADCGQLEILEFLLLK---GADINAPDKHHITPLLS   79 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTT-CCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTT---TCCTTCCCTTSCCHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcC-CCcCccCCCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCcCCCCCCCHHHH
Confidence            557899999999999999999999988 46788899999999999999999999999987   77899999999999999


Q ss_pred             HHhCCcHHHHHHHHhcCCCccccccCCCCHHHHH
Q 013339          136 ATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVV  169 (445)
Q Consensus       136 A~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a  169 (445)
                      |+..++.+++++|+++|++++..|..|.||+++|
T Consensus        80 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           80 AVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence            9999999999999999999999999999999994

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.86  E-value=1.3e-21  Score=187.75  Aligned_cols=137  Identities=18%  Similarity=0.164  Sum_probs=118.8

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhcCCCCCCC-----CCCCCccHHHHHHHc---CCHHHHHHHHhcCCCccccccccCcc
Q 013339           24 NGHTPLHLSCSKGHLEITRELLKLDPDLSSL-----PDNEGRTPLHWAAIK---GRINIIDEILSLNLQSAEMRTIHGET   95 (445)
Q Consensus        24 ~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~-----~d~~G~TpLh~Aa~~---G~~~iv~~Ll~~~~~~~~~~~~~g~t   95 (445)
                      .+.++||.|+..|+.+.++.|++.|++++..     .|..|.||||+|+..   |+.+++++|++.+ ..++.+|.+|+|
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g-advn~~d~~G~T  228 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG-GHLDAKAADGNT  228 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHS-SCTTCCCTTCCC
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcC-CCCCCCCCCCCC
Confidence            3557899999999999999999999988763     588899999999997   8999999999987 567788899999


Q ss_pred             hHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHh
Q 013339           96 VLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVE  170 (445)
Q Consensus        96 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~  170 (445)
                      |||+|+..|+.+++++|++.   +++++.+|.+|.||||+|+..++.+++++|++.|++      .|.||||+|.
T Consensus       229 pLh~A~~~g~~~~v~~Ll~~---gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~  294 (301)
T 2b0o_E          229 ALHYAALYNQPDCLKLLLKG---RALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDY  294 (301)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT---TCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC---
T ss_pred             HHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHH
Confidence            99999999999999999987   778899999999999999999999999999988876      5889999954

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.84  E-value=6.4e-22  Score=175.56  Aligned_cols=137  Identities=22%  Similarity=0.238  Sum_probs=116.5

Q ss_pred             HHHcCCHHHHHHHhhcCCCCCCC----------CCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHH
Q 013339           32 SCSKGHLEITRELLKLDPDLSSL----------PDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTV  101 (445)
Q Consensus        32 Aa~~g~~~iv~~LL~~~~~~~~~----------~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~  101 (445)
                      |++.|..+++++|++.+......          .+.+|.||||+|+..|+.++++.|++ + ..++.+|..|+||||+|+
T Consensus         7 aa~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~-~~~~~~d~~g~t~L~~A~   84 (183)
T 3deo_A            7 GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-D-RDVDAVDENGRTALLFVA   84 (183)
T ss_dssp             EEEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT-T-SCTTCCCTTSCCHHHHHH
T ss_pred             HHHhcCCchhHHHHHHhCCCCccccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh-c-CCCCCcCCCCCCHHHHHH
Confidence            34455566666666543322111          25688999999999999999999999 4 678889999999999999


Q ss_pred             HcCCHHHHHHHHHhcCcccccCCCC-CCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhc
Q 013339          102 KNNQYEAVKYLMETLNITKLANMPD-NDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDA  173 (445)
Q Consensus       102 ~~g~~~~v~~Ll~~~~~~~~~n~~d-~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a  173 (445)
                      .+|+.+++++|+++   +..+|.+| .+|+||||+|+..++.+++++|+++|++++.+|..|.||+++|.+..
T Consensus        85 ~~~~~~~v~~Ll~~---ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~  154 (183)
T 3deo_A           85 GLGSDKCVRLLAEA---GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL  154 (183)
T ss_dssp             HHTCHHHHHHHHHT---TCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHc---CCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhc
Confidence            99999999999998   77888888 89999999999999999999999999999999999999999976543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.84  E-value=1.1e-20  Score=185.70  Aligned_cols=142  Identities=15%  Similarity=0.125  Sum_probs=116.6

Q ss_pred             CCCChHHHHHHHc-CCHHHHHHHhhcCCCCCCCCC--CCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhH
Q 013339           23 LNGHTPLHLSCSK-GHLEITRELLKLDPDLSSLPD--NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHL   99 (445)
Q Consensus        23 ~~G~TpLH~Aa~~-g~~~iv~~LL~~~~~~~~~~d--~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~   99 (445)
                      ..+.||||.|+.. |+.++++.|++.|++++. .|  ..|.||||+|+..|+.+++++|++++ ..++..|..|+||||+
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~-~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~G-advn~~d~~G~TpLh~  274 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADVNW-VNGGQDNATPLIQATAANSLLACEFLLQNG-ANVNQADSAGRGPLHH  274 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTC-CCTTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCc-cccccCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCCCCCCCCHHHH
Confidence            4567899999999 999999999999999977 56  89999999999999999999999998 6778899999999999


Q ss_pred             HHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcC---CCccccccCCCCHHHHH
Q 013339          100 TVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG---VDVNAINRKGYTALDVV  169 (445)
Q Consensus       100 A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g---~~~~~~n~~G~Tpl~~a  169 (445)
                      |+..|+.+++++|+++   +++++.+|.+|.||||+|+..++.+++++|+..+   .+....+..+.|+++++
T Consensus       275 A~~~g~~~~v~~LL~~---Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~  344 (368)
T 3jue_A          275 ATILGHTGLACLFLKR---GADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIF  344 (368)
T ss_dssp             HHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-------------------
T ss_pred             HHHcCcHHHHHHHHHC---cCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHH
Confidence            9999999999999998   7889999999999999999999999999999654   44455667788888884

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.83  E-value=6.1e-21  Score=174.42  Aligned_cols=167  Identities=20%  Similarity=0.202  Sum_probs=129.5

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHhhcCCC--------------CCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCc
Q 013339           20 KKDLNGHTPLHLSCSKGHLEITRELLKLDPD--------------LSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQS   85 (445)
Q Consensus        20 ~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~--------------~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~   85 (445)
                      ..|.++.++.+++.+.|....+..+.+.+.-              .....|.+|.||||+||..|+.++++.|++.+ ..
T Consensus        20 l~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~   98 (222)
T 3ehr_A           20 LYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNR-VG   98 (222)
T ss_dssp             SSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHHEEEESCHHHHHHHHTCHHHHHHHHHTT-CC
T ss_pred             eCCcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhccccccccccccccccccCcHHHHHHHHhCC-CC
Confidence            4466677778877777765433222211100              00113557899999999999999999999988 56


Q ss_pred             cccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCH
Q 013339           86 AEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTA  165 (445)
Q Consensus        86 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tp  165 (445)
                      ++.+|..|+||||+|+.+|+.+++++|++..  +..+|.+|.+|+||||+|+..++.+++++|+++|++++.+|..|.||
T Consensus        99 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~--g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  176 (222)
T 3ehr_A           99 VNGLDKAGSTALYWACHGGHKDIVEMLFTQP--NIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLA  176 (222)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHTTST--TCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHcCC--CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCH
Confidence            7888999999999999999999999998752  56789999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhccccchhcHHHHHHHhcCccc
Q 013339          166 LDVVESDASNSGALQIVPALEEAGARRC  193 (445)
Q Consensus       166 l~~a~~~a~~~~~~~i~~~L~~~ga~~~  193 (445)
                      +++    +...+..++++.|++.|+...
T Consensus       177 l~~----A~~~~~~~~l~~l~~~~~~~~  200 (222)
T 3ehr_A          177 FDM----ATNAACASLLKKKQGTDAVRT  200 (222)
T ss_dssp             HHH----CCSHHHHHHHC----------
T ss_pred             HHH----hcchhHHHHHHHHhccchhhh
Confidence            999    777888999999998887654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.83  E-value=1.2e-20  Score=181.09  Aligned_cols=130  Identities=19%  Similarity=0.194  Sum_probs=110.9

Q ss_pred             CHHHHHHHHHHhchhhhcC-----CCCCCChHHHHHHHc---CCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHH
Q 013339            2 HVADIVKELLEARQEFAWK-----KDLNGHTPLHLSCSK---GHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRIN   73 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~-----~d~~G~TpLH~Aa~~---g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~   73 (445)
                      +..+.++.|++.+++++..     .|..|+||||+|+..   |+.+++++|+++|++++. +|.+|+||||+|+..|+.+
T Consensus       162 g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~-~d~~G~TpLh~A~~~g~~~  240 (301)
T 2b0o_E          162 RDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDA-KAADGNTALHYAALYNQPD  240 (301)
T ss_dssp             TCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTC-CCTTCCCHHHHHHHTTCHH
T ss_pred             cCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCC-CCCCCCCHHHHHHHcCCHH
Confidence            4678899999999887743     688999999999997   899999999999999977 8999999999999999999


Q ss_pred             HHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcH
Q 013339           74 IIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLT  142 (445)
Q Consensus        74 iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~  142 (445)
                      ++++|++.+ .+++.+|.+|+||||+|+..|+.+++++|++.   +..      .|.||||+|+..|+.
T Consensus       241 ~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~---ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          241 CLKLLLKGR-ALVGTVNEAGETALDIARKKHHKECEELLEQA---QAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHHHTT-CCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHH---HHH------TTSSCCC--------
T ss_pred             HHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh---cCC------CCCChhHHHHhcCCc
Confidence            999999998 67788999999999999999999999999987   322      689999999988753

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.82  E-value=1.5e-19  Score=171.30  Aligned_cols=166  Identities=19%  Similarity=0.164  Sum_probs=138.8

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCC-------------------------CC-----CCCCccHHHHHHHc
Q 013339           20 KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS-------------------------LP-----DNEGRTPLHWAAIK   69 (445)
Q Consensus        20 ~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~-------------------------~~-----d~~G~TpLh~Aa~~   69 (445)
                      ..|.-+.++|+.+...|+..+.+++...-++...                         ..     +....++|+.|+..
T Consensus        61 ~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~  140 (278)
T 1dcq_A           61 TLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKT  140 (278)
T ss_dssp             TTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHT
T ss_pred             ecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhh
Confidence            4677889999999999998777766533211100                         00     01124689999999


Q ss_pred             CCHHHHHHHHhcCCCc-----cccccccCcchHhHHHHc---CCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCc
Q 013339           70 GRINIIDEILSLNLQS-----AEMRTIHGETVLHLTVKN---NQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKL  141 (445)
Q Consensus        70 G~~~iv~~Ll~~~~~~-----~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~  141 (445)
                      |+.+.++.+++.+.+.     .+..+..|+||||+|+.+   |+.+++++|+++   +..+|.+|.+|+||||+|+..|+
T Consensus       141 ~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~---ga~in~~d~~g~TpLh~A~~~g~  217 (278)
T 1dcq_A          141 RDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN---SGNLDKQTGKGSTALHYCCLTDN  217 (278)
T ss_dssp             TCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH---CSCTTCCCTTCCCHHHHHHHTTC
T ss_pred             cccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC---CCCccccCCCCCCHHHHHHHcCC
Confidence            9999999999998654     344578899999999999   899999999998   78899999999999999999999


Q ss_pred             HHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCcc
Q 013339          142 TTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARR  192 (445)
Q Consensus       142 ~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~  192 (445)
                      .+++++|+++|++++.+|..|.||||+    |...++.+++++|+++|+.+
T Consensus       218 ~~~v~~Ll~~gad~~~~d~~g~tpL~~----A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          218 AECLKLLLRGKASIEIANESGETPLDI----AKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHH----HHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCCCCccCCCCCHHHH----HHHcCCHHHHHHHHHcCCCC
Confidence            999999999999999999999999999    55567889999999999864

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.81  E-value=1e-21  Score=182.59  Aligned_cols=158  Identities=21%  Similarity=0.219  Sum_probs=128.4

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHH
Q 013339           23 LNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVK  102 (445)
Q Consensus        23 ~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~  102 (445)
                      ..+.+++.+++..|+.+.+..+...+.++    +.+|.||||+|+..|+.++++.|++ + ..++.+|..|+||||+|+.
T Consensus        13 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~----~~~g~t~L~~A~~~g~~~~v~~Ll~-~-~~~~~~d~~g~t~L~~A~~   86 (244)
T 3ui2_A           13 GEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALSQLLE-D-RDVDAVDENGRTALLFVAG   86 (244)
T ss_dssp             TTTEEEEEEEESSCCCCEEEEGGGSCHHH----HHHHHHHHHHHHTTTCHHHHHHTTT-T-CCTTCBCTTSCBHHHHHHH
T ss_pred             CCCccHHHHHHHcCCCccccccccccccc----ccCCCCHHHHHHHcCCHHHHHHHHc-C-CCCCCcCCCCCCHHHHHHH
Confidence            34556666666666665555544444332    4579999999999999999999999 4 6788899999999999999


Q ss_pred             cCCHHHHHHHHHhcCcccccCCCC-CCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcH
Q 013339          103 NNQYEAVKYLMETLNITKLANMPD-NDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQI  181 (445)
Q Consensus       103 ~g~~~~v~~Ll~~~~~~~~~n~~d-~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i  181 (445)
                      +|+.+++++|+++   +..+|.+| ..|+||||+|+..++.+++++|+++|++++..|..|.||+|+|............
T Consensus        87 ~g~~~~v~~Ll~~---ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~  163 (244)
T 3ui2_A           87 LGSDKCVRLLAEA---GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP  163 (244)
T ss_dssp             HTCHHHHHHHHHT---TCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSH
T ss_pred             CCCHHHHHHHHHc---CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCH
Confidence            9999999999998   78888888 8899999999999999999999999999999999999999998765444433444


Q ss_pred             HHHHHHhc
Q 013339          182 VPALEEAG  189 (445)
Q Consensus       182 ~~~L~~~g  189 (445)
                      +.+-.+.|
T Consensus       164 l~~a~~~g  171 (244)
T 3ui2_A          164 MQFGRRIG  171 (244)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHcC
Confidence            44444444

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.81  E-value=1.7e-19  Score=170.91  Aligned_cols=126  Identities=18%  Similarity=0.156  Sum_probs=116.3

Q ss_pred             ChHHHHHHHcCCHHHHHHHhhcCCCCCCC-----CCCCCccHHHHHHHc---CCHHHHHHHHhcCCCccccccccCcchH
Q 013339           26 HTPLHLSCSKGHLEITRELLKLDPDLSSL-----PDNEGRTPLHWAAIK---GRINIIDEILSLNLQSAEMRTIHGETVL   97 (445)
Q Consensus        26 ~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~-----~d~~G~TpLh~Aa~~---G~~~iv~~Ll~~~~~~~~~~~~~g~t~L   97 (445)
                      .++||.|+..|+.+.++.+++.|++++..     .|..|+||||+|+..   |+.+++++|++++ ..++.+|..|+|||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~g-a~in~~d~~g~TpL  209 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-GNLDKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-SCTTCCCTTCCCHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCC-CCccccCCCCCCHH
Confidence            47899999999999999999999986432     488999999999999   8999999999998 56888899999999


Q ss_pred             hHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCc
Q 013339           98 HLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDV  155 (445)
Q Consensus        98 h~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~  155 (445)
                      |+|+.+|+.+++++|+++   +++++.+|.+|.||||+|+..++.+++++|+++|++.
T Consensus       210 h~A~~~g~~~~v~~Ll~~---gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRG---KASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHc---CCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            999999999999999997   7889999999999999999999999999999888753

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.81  E-value=1.2e-19  Score=142.07  Aligned_cols=90  Identities=40%  Similarity=0.712  Sum_probs=69.6

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHc
Q 013339           24 NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKN  103 (445)
Q Consensus        24 ~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~  103 (445)
                      +|+||||+|+..|+.++++.|++.|++++. +|.+|+||||+|+..|+.+++++|++.+ ..++.+|.+|+||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~-~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHc
Confidence            478888888888888888888888888766 7888888888888888888888888876 45566677777777777777


Q ss_pred             CCHHHHHHHHHh
Q 013339          104 NQYEAVKYLMET  115 (445)
Q Consensus       104 g~~~~v~~Ll~~  115 (445)
                      |+.+++++|++.
T Consensus        79 ~~~~~~~~Ll~~   90 (93)
T 1n0q_A           79 GHLEVVKLLLEA   90 (93)
T ss_dssp             TCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHc
Confidence            777777777765

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.81  E-value=8.9e-22  Score=194.20  Aligned_cols=147  Identities=9%  Similarity=0.091  Sum_probs=120.8

Q ss_pred             CHHHHHHHHHHhchhh--hcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCC--CCCCCCCccHHHHHHHcCCHHHHHH
Q 013339            2 HVADIVKELLEARQEF--AWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLS--SLPDNEGRTPLHWAAIKGRINIIDE   77 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~--~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~--~~~d~~G~TpLh~Aa~~G~~~iv~~   77 (445)
                      |+.|+++.|++.+...  ....|..|.||||+||..|+.++|++|+++|++..  .+.+.+ .||||+||..|+.+++++
T Consensus       103 G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~  181 (376)
T 2aja_A          103 GCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNR  181 (376)
T ss_dssp             CCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHH
Confidence            6789999999987621  12345678999999999999999999999997531  112333 999999999999999999


Q ss_pred             HHhcCCCcccc--ccccCcchHhHHH-HcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCC
Q 013339           78 ILSLNLQSAEM--RTIHGETVLHLTV-KNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVD  154 (445)
Q Consensus        78 Ll~~~~~~~~~--~~~~g~t~Lh~A~-~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~  154 (445)
                      |++++++ ...  .|.+|.||||+|+ .+|+.+++++|++.   +.       .|+||||.|+..|+.+++++|++.|++
T Consensus       182 Ll~~ga~-~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~---ga-------~~~taL~~Aa~~g~~evv~lL~~~ga~  250 (376)
T 2aja_A          182 LCELAPT-EATAMIQAENYYAFRWAAVGRGHHNVINFLLDC---PV-------MLAYAEIHEFEYGEKYVNPFIARHVNR  250 (376)
T ss_dssp             HHHSCGG-GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS---HH-------HHHHHHHCTTTTTTTTHHHHHHHHHHH
T ss_pred             HHHcCCc-cchhccCCCCCCHHHHHHHHCCCHHHHHHHHhC---CC-------ccchHHHHHHHCCCHHHHHHHHhcCcc
Confidence            9999853 343  7888999999999 99999999999985   32       389999999999999999999999998


Q ss_pred             cccccc
Q 013339          155 VNAINR  160 (445)
Q Consensus       155 ~~~~n~  160 (445)
                      ++..+.
T Consensus       251 ~~~~~~  256 (376)
T 2aja_A          251 LKEMHD  256 (376)
T ss_dssp             HHHHHT
T ss_pred             cccccH
Confidence            876654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.81  E-value=6.2e-20  Score=149.60  Aligned_cols=108  Identities=34%  Similarity=0.402  Sum_probs=63.9

Q ss_pred             CCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHH
Q 013339           55 PDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILH  134 (445)
Q Consensus        55 ~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LH  134 (445)
                      +|.+|+||||+|+..|+.++++.|++.+ ..++.+|..|.||||+|+..|+.+++++|++.   +..++.+|.+|.||||
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~d~~g~tpl~   80 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKG-ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK---GADVNARSKDGNTPEH   80 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTT-CCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTT---TCCTTCCCTTCCCTTH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc---CCCCcccCCCCCCHHH
Confidence            3444555555555555555555555444 23344444555555555555555555555554   4456666777777777


Q ss_pred             HHHhCCcHHHHHHHHhcCCCccccccCCCCHH
Q 013339          135 LATAGKLTTMVIYLLKLGVDVNAINRKGYTAL  166 (445)
Q Consensus       135 lA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl  166 (445)
                      +|+..++.+++++|+++|+++|..+..|.||-
T Consensus        81 ~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           81 LAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            77777777777777777777777777777763

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.80  E-value=2.5e-19  Score=140.35  Aligned_cols=93  Identities=35%  Similarity=0.534  Sum_probs=82.2

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHH
Q 013339           58 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLAT  137 (445)
Q Consensus        58 ~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~  137 (445)
                      +|+||||+|+..|+.+++++|++.+ ..++.+|..|+||||+|+.+|+.+++++|+++   +..++.+|.+|+||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~t~l~~A~   76 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA---GADVNAKDKNGRTPLHLAA   76 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCccCCCCCCHHHHHH
Confidence            4889999999999999999999987 56788888999999999999999999999987   7778899999999999999


Q ss_pred             hCCcHHHHHHHHhcCCC
Q 013339          138 AGKLTTMVIYLLKLGVD  154 (445)
Q Consensus       138 ~~~~~~iv~~Ll~~g~~  154 (445)
                      ..++.+++++|+++|++
T Consensus        77 ~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           77 RNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HTTCHHHHHHHHHTTCC
T ss_pred             HcCCHHHHHHHHHcCCC
Confidence            99999999999988874

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.80  E-value=5.9e-20  Score=149.71  Aligned_cols=109  Identities=30%  Similarity=0.407  Sum_probs=99.5

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhH
Q 013339           20 KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHL   99 (445)
Q Consensus        20 ~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~   99 (445)
                      ..|.+|+||||+||..|+.++++.|+++|++++. +|..|.||||+|+..|+.+++++|++.+ ...+.+|..|.||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~d~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA-RSKDGNTPLHLAAKNGHAEIVKLLLAKG-ADVNARSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSC-CCSSSCCTTHHHHTTTCHHHHHHHTTTT-CCTTCCCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCCHHHH
Confidence            4688999999999999999999999999999876 8999999999999999999999999997 5678889999999999


Q ss_pred             HHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHH
Q 013339          100 TVKNNQYEAVKYLMETLNITKLANMPDNDGNTIL  133 (445)
Q Consensus       100 A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~L  133 (445)
                      |+..|+.+++++|+++   +..+|.++..|.||-
T Consensus        82 A~~~~~~~~~~~Ll~~---ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAK---GADVNARSWGSSHHH  112 (115)
T ss_dssp             HHTTTCHHHHHHHHTT---SSSHHHHSCCCC---
T ss_pred             HHHCCCHHHHHHHHHc---CCCCCcCCccccccc
Confidence            9999999999999988   788899999998873

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.78  E-value=7.4e-19  Score=172.72  Aligned_cols=136  Identities=18%  Similarity=0.190  Sum_probs=105.1

Q ss_pred             CHHHHHHHHHHhchhhhcCCC--CCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHH
Q 013339            2 HVADIVKELLEARQEFAWKKD--LNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL   79 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d--~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll   79 (445)
                      +..++++.|++.+.+++ ..|  ..|.||||+||..|+.++|++|+++|++++. +|..|+||||+|+..|+.+++++|+
T Consensus       211 g~~~~v~~LL~~Gadvn-~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~-~d~~G~TpLh~A~~~g~~~~v~~LL  288 (368)
T 3jue_A          211 PSLPTMADALAHGADVN-WVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ-ADSAGRGPLHHATILGHTGLACLFL  288 (368)
T ss_dssp             CCHHHHHHHHHTTCCTT-CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCC-ccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            57899999999998887 445  8899999999999999999999999999976 8999999999999999999999999


Q ss_pred             hcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCC
Q 013339           80 SLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGK  140 (445)
Q Consensus        80 ~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~  140 (445)
                      +++ ..++.+|.+|.||||+|+..|+.+++++|++...........+..+.|+++++....
T Consensus       289 ~~G-ad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          289 KRG-ADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             HTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred             HCc-CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence            998 677889999999999999999999999999875555555566778899998876543

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.74  E-value=5.3e-18  Score=137.21  Aligned_cols=97  Identities=20%  Similarity=0.296  Sum_probs=81.6

Q ss_pred             chhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccC
Q 013339           14 RQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHG   93 (445)
Q Consensus        14 ~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g   93 (445)
                      .|......|.+|.||||+||..|+.++++.|++.|++++. +|..|+||||+|+..|+.+++++|++++ ...+.+|..|
T Consensus        13 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~-~d~~g~tpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g   90 (110)
T 2zgd_A           13 LVPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAA-KDKNGSTPLHLAARNGHLEVVKLLLEAG-ADVXAQDKFG   90 (110)
T ss_dssp             ---------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTS
T ss_pred             CCCcccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccccCC
Confidence            3445567889999999999999999999999999999876 7999999999999999999999999987 5677888899


Q ss_pred             cchHhHHHHcCCHHHHHHH
Q 013339           94 ETVLHLTVKNNQYEAVKYL  112 (445)
Q Consensus        94 ~t~Lh~A~~~g~~~~v~~L  112 (445)
                      .||||+|+..|+.+++++|
T Consensus        91 ~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           91 KTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CCHHHHHHHHTCHHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHh
Confidence            9999999999999999876

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.65  E-value=3.2e-16  Score=126.66  Aligned_cols=90  Identities=21%  Similarity=0.242  Sum_probs=74.1

Q ss_pred             CCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHH
Q 013339           55 PDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILH  134 (445)
Q Consensus        55 ~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LH  134 (445)
                      .|.+|.||||+|+..|+.++++.|++.+ ..++.+|..|+||||+|+.+|+.+++++|+++   +..++.+|.+|+||||
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~   95 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANG-ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA---GADVXAQDKFGKTAFD   95 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCccccccCCCcHHH
Confidence            5778888888888888888888888876 46677788888888888888888888888887   6678888888888888


Q ss_pred             HHHhCCcHHHHHHH
Q 013339          135 LATAGKLTTMVIYL  148 (445)
Q Consensus       135 lA~~~~~~~iv~~L  148 (445)
                      +|+..++.+++++|
T Consensus        96 ~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           96 ISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            88888888888776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	445
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-21
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-20
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-16
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-21
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-19
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-18
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-14
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-19
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-13
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-12
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.001
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-18
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-17
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-17
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-17
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-12
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-14
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-14
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	9e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-12
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	7e-08
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.001
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.004
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	7e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.001
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.003
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	4e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	7e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	7e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	4e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.001
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.002

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.7 bits (229), Expect = 3e-21
 Identities = 48/196 (24%), Positives = 76/196 (38%), Gaps = 16/196 (8%)

Query: 1   MHVA------DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSL 54
           +HVA       IVK LL+         ++   TPLH++   GH E+ + LL+    +++ 
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPN-VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA- 61

Query: 55  PDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME 114
              + +TPLH AA  G  N++  +L  N       T     +     + +    +  L +
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 121

Query: 115 TLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDAS 174
             +           G T LH+A       +   LL+     NA  + G T L V    A 
Sbjct: 122 EASQ----ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHV----AV 173

Query: 175 NSGALQIVPALEEAGA 190
           +   L IV  L   G 
Sbjct: 174 HHNNLDIVKLLLPRGG 189

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.6 bits (226), Expect = 1e-20
 Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 9/186 (4%)

Query: 11  LEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKG 70
           L      A  + + G TPLHL+  +GH E+   LL    + + L +  G TPLH  A +G
Sbjct: 217 LLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN-LGNKSGLTPLHLVAQEG 275

Query: 71  RINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGN 130
            + + D ++   +   +  T  G T LH+       + VK+L++        N     G 
Sbjct: 276 HVPVADVLIKHGV-MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV---NAKTKLGY 331

Query: 131 TILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
           + LH A     T +V  LLK G   N ++  G T L +    A   G + +   L+    
Sbjct: 332 SPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI----AKRLGYISVTDVLKVVTD 387

Query: 191 RRCDQL 196
                L
Sbjct: 388 ETSFVL 393

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.6 bits (187), Expect = 8e-16
 Identities = 46/172 (26%), Positives = 70/172 (40%), Gaps = 9/172 (5%)

Query: 19  WKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEI 78
                 G TPLH++   G + +   LL+ D   ++     G TPLH A     ++I+ ++
Sbjct: 126 ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA-AGKNGLTPLHVAVHHNNLDIV-KL 183

Query: 79  LSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATA 138
           L     S      +G T LH+  K NQ E  + L++        N     G T LHLA  
Sbjct: 184 LLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA---NAESVQGVTPLHLAAQ 240

Query: 139 GKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
                MV  LL    + N  N+ G T L +     +  G + +   L + G 
Sbjct: 241 EGHAEMVALLLSKQANGNLGNKSGLTPLHL----VAQEGHVPVADVLIKHGV 288

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (153), Expect = 1e-11
 Identities = 26/146 (17%), Positives = 45/146 (30%), Gaps = 33/146 (22%)

Query: 19  WKKDLNGHTPLHLSCSKGHLEITRELLKLDPDL--------------------------- 51
              + +G TPLHL   +GH+ +   L+K    +                           
Sbjct: 258 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 317

Query: 52  -----SSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQY 106
                 +     G +PLH AA +G  +I+  +L     S    +  G T L +  +    
Sbjct: 318 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA-SPNEVSSDGTTPLAIAKRLGYI 376

Query: 107 EAVKYLMETLNITKLANMPDNDGNTI 132
                L    + T    + D    + 
Sbjct: 377 SVTDVLKVVTDETSFVLVSDKHRMSF 402

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (149), Expect = 4e-11
 Identities = 26/102 (25%), Positives = 38/102 (37%), Gaps = 9/102 (8%)

Query: 95  TVLHLTVKNNQYEAVKYLMET-LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGV 153
           T LH+         VK L++   +     N+ +    T LH+A     T +  YLL+   
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASP----NVSNVKVETPLHMAARAGHTEVAKYLLQNKA 57

Query: 154 DVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRCDQ 195
            VNA  +   T L      A+  G   +V  L E  A     
Sbjct: 58  KVNAKAKDDQTPLHC----AARIGHTNMVKLLLENNANPNLA 95

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 90.9 bits (224), Expect = 5e-21
 Identities = 37/213 (17%), Positives = 70/213 (32%), Gaps = 48/213 (22%)

Query: 3   VADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS--------- 53
           + ++       +       D +G+TPLH   S  +LE+ + L+K   +            
Sbjct: 85  LQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCL 144

Query: 54  ---------------------------LPDNEGRTPLHWAAIKGRIN------------I 74
                                      L D+  RT LH   I   +             +
Sbjct: 145 VKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDIL 204

Query: 75  IDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILH 134
           +  I+    +  +  T   E+  +      +   ++ L     I  + N  D++G+T L+
Sbjct: 205 MGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLN 264

Query: 135 LATAGKLTTMVIYLLKLGVDVNAINRKGYTALD 167
           +A      ++V  LL  G D    N+ G   +D
Sbjct: 265 IAARLGNISIVDALLDYGADPFIANKSGLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.6 bits (148), Expect = 3e-11
 Identities = 33/238 (13%), Positives = 69/238 (28%), Gaps = 53/238 (22%)

Query: 2   HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRT 61
            + ++   L         +   +     H+S      E+         +L+   D  G T
Sbjct: 50  EIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNT 109

Query: 62  PLHWAAIKGRINIIDEILS----LNLQSAEMRTIH------------------------- 92
           PLHW      + ++  ++              +                           
Sbjct: 110 PLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC 169

Query: 93  -------GETVLHLTVKNN----QYEAVKYLMETLNITKLANMPDN------DGNTILHL 135
                    T+LH  +  +       A KY ++ L    +            +  +  + 
Sbjct: 170 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND 229

Query: 136 ATAGKLTTMVIYLLK---LGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
               +  +++  L     +   +NA +  G T L++    A+  G + IV AL + GA
Sbjct: 230 KNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNI----AARLGNISIVDALLDYGA 283

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.7 bits (143), Expect = 1e-10
 Identities = 18/154 (11%), Positives = 49/154 (31%), Gaps = 20/154 (12%)

Query: 1   MHVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRE------------LLKLD 48
            + +   + LL+        +D    T LH       +                 ++K  
Sbjct: 153 NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ 212

Query: 49  PDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEM--RTIHGETVLHLTVKNNQY 106
                   NE  +  +    + + +I++ +    + +  +  +  +G+T L++  +    
Sbjct: 213 NRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNI 272

Query: 107 EAVKYLMET-LNITKLANMPDNDGNTILHLATAG 139
             V  L++   +      + +  G   +    AG
Sbjct: 273 SIVDALLDYGADP----FIANKSGLRPVDFG-AG 301

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.6 bits (213), Expect = 1e-19
 Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 5/148 (3%)

Query: 15  QEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINI 74
           +E   +    G T L  +  KGH+E+ + LL       +  DN GR  L  A +    + 
Sbjct: 138 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD 197

Query: 75  IDEILSLNLQ---SAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNT 131
           ++ I  L L       +R   G+T L L V+      V+ L+E  +I    N  D+DG T
Sbjct: 198 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE--INDTDSDGKT 255

Query: 132 ILHLATAGKLTTMVIYLLKLGVDVNAIN 159
            L LA   KL  +   L K G   +  +
Sbjct: 256 ALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.9 bits (201), Expect = 4e-18
 Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 17/184 (9%)

Query: 19  WKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLS---------SLPDNEGRTPLHWAAIK 69
            + D  G T    +   G ++  + L K   +++               G T L  AA K
Sbjct: 99  NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 158

Query: 70  GRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--NMPDN 127
           G + ++  +L             G   L   + ++    V+ +   L +   A  N+   
Sbjct: 159 GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL-LDHGADVNVRGE 217

Query: 128 DGNTILHLATAGKLTTMVIYLL-KLGVDVNAINRKGYTALDVVESDASNSGALQIVPALE 186
            G T L LA   K   +V  LL +  +++N  +  G TAL +    A      +I   L 
Sbjct: 218 RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL----AVELKLKKIAELLC 273

Query: 187 EAGA 190
           + GA
Sbjct: 274 KRGA 277

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (170), Expect = 4e-14
 Identities = 36/208 (17%), Positives = 68/208 (32%), Gaps = 40/208 (19%)

Query: 23  LNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLN 82
           +  +  L  +     +++ ++LL+   +++   +  G TPLH A    R +I++ +L   
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 83  LQSAEM--------------------------------RTIHGETVLHLTVKNNQYEAVK 110
                                                    +G T         + +A+K
Sbjct: 63  ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 122

Query: 111 YLME-------TLNITKLANMPDNDGNTILHLATAGKLTTMVIYLL-KLGVDVNAINRKG 162
           +L +            +        G T L  A       ++  LL ++G DVNA +  G
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 182

Query: 163 YTALDVVESDASNSGALQIVPALEEAGA 190
             AL      + +S    I   L + GA
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGA 210

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (167), Expect = 1e-13
 Identities = 48/232 (20%), Positives = 75/232 (32%), Gaps = 52/232 (22%)

Query: 5   DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPD-------------- 50
           D+V++LLE      ++++  G TPLH +      +I   LL+   D              
Sbjct: 19  DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLL 78

Query: 51  ------------------LSSLPDNEGRTPLHWAAIKGRINIIDEILSL---------NL 83
                               +  D  G T    AA+ G++  +  +              
Sbjct: 79  AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK 138

Query: 84  QSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTT 143
           +  E     G T L    +    E +K L++ +      N  DN G   L  A      +
Sbjct: 139 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD--VNACDNMGRNALIHALLSSDDS 196

Query: 144 MVI----YLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPAL-EEAGA 190
            V      LL  G DVN    +G T L +    A     L +V  L E+   
Sbjct: 197 DVEAITHLLLDHGADVNVRGERGKTPLIL----AVEKKHLGLVQRLLEQEHI 244

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (152), Expect = 1e-11
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 1/80 (1%)

Query: 1   MHVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGR 60
             V  I   LL+   +    +   G TPL L+  K HL + + LL+ +    +  D++G+
Sbjct: 196 SDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK 254

Query: 61  TPLHWAAIKGRINIIDEILS 80
           T L  A       I + +  
Sbjct: 255 TALLLAVELKLKKIAELLCK 274

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 85.7 bits (211), Expect = 5e-19
 Identities = 26/198 (13%), Positives = 55/198 (27%), Gaps = 17/198 (8%)

Query: 1   MHVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGH---LEITRELLKLDPDLSSLPDN 57
           ++ A   +   +   +   KK +       ++   G    L+    LL  D  +  +   
Sbjct: 67  LYYAHYNRNAKQLWSDAH-KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVI-QA 124

Query: 58  EGRTPLHWAAIKGRINIIDEILSLNL-QSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL 116
           E       AA  G +++++ +  L   +   M          L  +N     +  L E  
Sbjct: 125 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELA 184

Query: 117 NITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNS 176
                A +   +       A       ++ +LL   V +                     
Sbjct: 185 PTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEI-----------HEFEY 233

Query: 177 GALQIVPALEEAGARRCD 194
           G   + P +     R  +
Sbjct: 234 GEKYVNPFIARHVNRLKE 251

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 67.2 bits (163), Expect = 8e-13
 Identities = 20/159 (12%), Positives = 43/159 (27%), Gaps = 23/159 (14%)

Query: 1   MHVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGR 60
               +++  LL+          +            G   +   + +           E  
Sbjct: 207 RGHHNVINFLLD--------CPVMLAYAEIHEFEYGEKYVNPFIARHVNR-----LKEMH 253

Query: 61  TPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITK 120
                +   G  +++        +S  ++  +    L         + +++L+    I  
Sbjct: 254 DAFKLSNPDGVFDLVT-------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKA 306

Query: 121 LA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNA 157
           LA       D N +L LA           LL +   V A
Sbjct: 307 LAPTATIPGDANELLRLALRLGNQGACALLLSIP-SVLA 344

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 63.8 bits (154), Expect = 8e-12
 Identities = 20/193 (10%), Positives = 50/193 (25%), Gaps = 30/193 (15%)

Query: 5   DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLH 64
           ++ +  + A +             + L  +K   ++ + L       +     +  +  H
Sbjct: 26  NLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRN-AKQLWSDAH 84

Query: 65  WAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM 124
                                   + I  E +  +        A+  L   L   ++  +
Sbjct: 85  -----------------------KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKV 121

Query: 125 PDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK--GYTALDVVESDASNSGALQIV 182
              +      LA       ++  L +L         +   Y A  +     + +G L ++
Sbjct: 122 IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLA----AENGHLHVL 177

Query: 183 PALEEAGARRCDQ 195
             L E        
Sbjct: 178 NRLCELAPTEATA 190

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 5/54 (9%)

Query: 5   DIVKELLEARQEFAWKKD----LNGHTPLHLSCSKGHLEITRELLKLDPDLSSL 54
           D ++ LL      A         + +  L L+   G+      LL + P + +L
Sbjct: 293 DDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI-PSVLAL 345

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.9 bits (201), Expect = 2e-18
 Identities = 46/197 (23%), Positives = 75/197 (38%), Gaps = 38/197 (19%)

Query: 5   DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLE------------------------- 39
           + +KE + A +  A + D +  T LH +CS GH E                         
Sbjct: 17  EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHI 76

Query: 40  --------ITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTI 91
                   I + LL     +++  +  G TPLH+AA K R  I   +L     + + +  
Sbjct: 77  AASAGRDEIVKALLGKGAQVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGA-NPDAKDH 134

Query: 92  HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKL 151
           +  T +H        + +  L+     T   N+ D +GNT LHLA   +       L+  
Sbjct: 135 YEATAMHRAAAKGNLKMIHILLYYKAST---NIQDTEGNTPLHLACDEERVEEAKLLVSQ 191

Query: 152 GVDVNAINRKGYTALDV 168
           G  +   N++  T L V
Sbjct: 192 GASIYIENKEEKTPLQV 208

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.5 bits (192), Expect = 2e-17
 Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 8/151 (5%)

Query: 1   MHVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGR 60
               D + + L  +       + NG TPLH + SK   EI   LL+   +  +  D+   
Sbjct: 79  SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-KDHYEA 137

Query: 61  TPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET-LNIT 119
           T +H AA KG + +I  IL     S  ++   G T LHL     + E  K L+    +I 
Sbjct: 138 TAMHRAAAKGNLKMIH-ILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI- 195

Query: 120 KLANMPDNDGNTILHLATAGKLTTMVIYLLK 150
               + + +  T L +A  G L  ++  +++
Sbjct: 196 ---YIENKEEKTPLQVA-KGGLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (191), Expect = 4e-17
 Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 4/141 (2%)

Query: 26  HTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQS 85
           +  +      G LE  +E +  D  L++  D + RT LHWA   G   I++ +L L +  
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 86  AEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMV 145
            +        +               L +   +    N  + +G T LH A +     + 
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV----NAVNQNGCTPLHYAASKNRHEIA 119

Query: 146 IYLLKLGVDVNAINRKGYTAL 166
           + LL+ G + +A +    TA+
Sbjct: 120 VMLLEGGANPDAKDHYEATAM 140

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.8 bits (190), Expect = 7e-17
 Identities = 30/158 (18%), Positives = 51/158 (32%), Gaps = 14/158 (8%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKL--DPDLSSLPDNEGRTPLHWAAIKGRINIIDE 77
               +G T LHL+    H      LL      +   L ++ G+T LH AAI G  + +++
Sbjct: 4   YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK 63

Query: 78  ILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME-----------TLNITKLANMPD 126
           + +       +    G T LHL  +   +     L++           T         PD
Sbjct: 64  LYA-AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122

Query: 127 NDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYT 164
                    +                + + A N  G+T
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.7 bits (156), Expect = 2e-12
 Identities = 50/243 (20%), Positives = 72/243 (29%), Gaps = 59/243 (24%)

Query: 1   MHVA------DIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHL-------------- 38
           +H+A        +  LL   A  E+   ++  G T LHL+   G                
Sbjct: 13  LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL 72

Query: 39  -------------------EITRELLKLDPD---------LSSLPDNEGRTPLHWAAIKG 70
                                   LL+  P          L+   D    T    AA+  
Sbjct: 73  VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDS 132

Query: 71  RINIIDEILSLNLQSA---EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDN 127
           + N  +E    +       E     G T LH+ V +   E V+ L +             
Sbjct: 133 QPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN--KPEPT 190

Query: 128 DGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEE 187
            G T LHLA   +  +++  LLK G D  A    G T L      A       +   L  
Sbjct: 191 CGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS----ALLRPNPILARLLRA 246

Query: 188 AGA 190
            GA
Sbjct: 247 HGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.0 bits (110), Expect = 2e-06
 Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 4/101 (3%)

Query: 93  GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG 152
           G+T LHL V +     + +L+      +  ++ ++ G T LHLA      + V  L   G
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68

Query: 153 VDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRC 193
             V    R G+TAL +    A    A      L +      
Sbjct: 69  AGVLVAERGGHTALHL----ACRVRAHTCACVLLQPRPSHP 105

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.7 bits (104), Expect = 8e-06
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 121 LANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK---GYTAL 166
           +      DG+T LHLA   +    + +LL        ++ +   G TAL
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTAL 49

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 70.2 bits (170), Expect = 2e-14
 Identities = 40/215 (18%), Positives = 56/215 (26%), Gaps = 39/215 (18%)

Query: 4   ADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPL 63
           A ++ +LL    E     D  G T LHL+      +  + LL    D +S  +       
Sbjct: 2   AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLH 61

Query: 64  HWAAIKGRIN--------------------------------IIDEILSLNLQSAEMRTI 91
              A                                       + E L            
Sbjct: 62  AAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADN 121

Query: 92  HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKL 151
            G+T LH     N  EAV  L+         +  D+   T L LA           LL  
Sbjct: 122 SGKTALHWAAAVNNTEAVNILLMHHANR---DAQDDKDETPLFLAAREGSYEASKALLDN 178

Query: 152 GVDVNAINRKGYTALDVVESDASNSGALQIVPALE 186
             +    +       DV    AS      IV  L+
Sbjct: 179 FANREITDHMDRLPRDV----ASERLHHDIVRLLD 209

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 1/44 (2%)

Query: 1   MHVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREL 44
               +  K LL+         D     P  ++  + H +I R L
Sbjct: 166 EGSYEASKALLDNFAN-REITDHMDRLPRDVASERLHHDIVRLL 208

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (166), Expect = 6e-14
 Identities = 38/213 (17%), Positives = 65/213 (30%), Gaps = 43/213 (20%)

Query: 24  NGHTPLHLSCSKGHLEITRELLKLDPDLSSLP---DNEGRTPLHWAAIKGRINIIDEILS 80
           +G + LHL+       +T E+++      +     +N  +TPLH A I  +  I + +L 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 81  LNLQSAEMRTIHGETVL----------------HLTVKNNQYEAVKYLMETLNITKLANM 124
                          +                   T  +                 LA++
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 125 PDN--------------------DGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYT 164
                                  +G T LHLA   +   +V  LLK G DVN +  +GY+
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 180

Query: 165 ALDVVESDASNSGALQIVPALEEAGARRCDQLP 197
              +         + +I   L +        LP
Sbjct: 181 PYQL----TWGRPSTRIQQQLGQLTLENLQMLP 209

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (118), Expect = 9e-08
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 19  WKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEI 78
            ++  NG T LHL+    + ++   LLK   D  +    +G +P      +    I  ++
Sbjct: 139 AQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQL 197

Query: 79  LSLNLQSAEM 88
             L L++ +M
Sbjct: 198 GQLTLENLQM 207

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 2e-06
 Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 2/113 (1%)

Query: 19  WKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEI 78
              + NGHT LHL+   G+L I   L+ L  D+++     GRT LH A      +++  +
Sbjct: 105 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 164

Query: 79  LSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNT 131
           L          T  G +   LT         + L + L +  L  +P+++   
Sbjct: 165 LKCG-ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ-LTLENLQMLPESEDEE 215

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.7 bits (153), Expect = 3e-12
 Identities = 33/141 (23%), Positives = 50/141 (35%), Gaps = 1/141 (0%)

Query: 27  TPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL-NLQS 85
            PLH +C +      +ELL   P L    D +GR PLHW+       I   +LS     +
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 86  AEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMV 145
            +               +     V   +    +    N   N G T LHLA   K   + 
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 146 IYLLKLGVDVNAINRKGYTAL 166
            +L++ G  V   ++     L
Sbjct: 122 QFLIENGASVRIKDKFNQIPL 142

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.5 bits (137), Expect = 4e-10
 Identities = 44/233 (18%), Positives = 69/233 (29%), Gaps = 52/233 (22%)

Query: 1   MHVA------DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSL 54
           +H A        V+ELL ++     +KD +G  PLH S S    EIT  LL    +++  
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 63

Query: 55  PDNEGRTPLHWAAIKGRINIIDE------------------------------------I 78
              +      +       N+                                        
Sbjct: 64  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 123

Query: 79  LSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATA 138
           L  N  S  ++    +  LH        + ++ L          N  D  G T L  A A
Sbjct: 124 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG--LGKSAVNWQDKQGWTPLFHALA 181

Query: 139 GKLTTMVIYLL-KLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
                  + L+ K G + + ++ KG  A DV    A N    Q+         
Sbjct: 182 EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV----ALNE---QVKKFFLNNVV 227

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 62.4 bits (150), Expect = 1e-11
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 19  WKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIID 76
            K+D +G TP+ L+  +G +E+   L++    +    D    T    A      NI+D
Sbjct: 215 DKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV-EAVDATDHTARQLAQANNHHNIVD 271

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 62.4 bits (150), Expect = 2e-11
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 1/93 (1%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL 79
            +   G T LH +    ++ I + L+          D +G+TP+  AA +GRI ++  ++
Sbjct: 182 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI 241

Query: 80  SLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 112
                S E       T   L   NN +  V   
Sbjct: 242 QQGA-SVEAVDATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 58.6 bits (140), Expect = 3e-10
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 87  EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVI 146
           +     G T LH   + +    VKYL+      K  +  D DG T + LA       +V+
Sbjct: 181 DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK--DKQDEDGKTPIMLAAQEGRIEVVM 238

Query: 147 YLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEA 188
           YL++ G  V A++   +TA  +    A  +    IV   +  
Sbjct: 239 YLIQQGASVEAVDATDHTARQL----AQANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 55.9 bits (133), Expect = 3e-09
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 5/96 (5%)

Query: 56  DNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET 115
             +GRT LH+AA    + I+  ++     + + +   G+T + L  +  + E V YL++ 
Sbjct: 184 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ 243

Query: 116 -LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLK 150
             ++       D   +T   LA A     +V    +
Sbjct: 244 GASV----EAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.4 bits (111), Expect = 1e-06
 Identities = 25/188 (13%), Positives = 55/188 (29%), Gaps = 24/188 (12%)

Query: 1   MHVA----DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLS---- 52
           +H        + E +  R+        +  T LH   S    E + +L+  +        
Sbjct: 6   LHTEAAGSYAITEPIT-RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG 64

Query: 53  ---SLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAV 109
              +  D +  TPL  A +  R  ++  ++                +       + +  +
Sbjct: 65  ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRD-FGMM 123

Query: 110 KYLMETLNITKLANMPDNDGNTILHLATAGK-----------LTTMVIYLLKLGVDVNAI 158
            Y++ +  +       D +G T L +    +           +              ++ 
Sbjct: 124 VYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSE 183

Query: 159 NRKGYTAL 166
             KG TAL
Sbjct: 184 KYKGRTAL 191

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 5   DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLK 46
           ++V  L++         D   HT   L+ +  H  I     +
Sbjct: 235 EVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 61.7 bits (148), Expect = 3e-11
 Identities = 34/172 (19%), Positives = 57/172 (33%), Gaps = 11/172 (6%)

Query: 1   MHVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGR 60
                 + E L ++       +  G TPL ++  +   E+ +  +            E  
Sbjct: 115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEE 174

Query: 61  TPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITK 120
             +   A +   +                   G T LH+       E +K L+       
Sbjct: 175 RIMLRDARQWLNSGHIND--------VRHAKSGGTALHVAAAKGYTEVLKLLI---QARY 223

Query: 121 LANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESD 172
             N+ D DG T LH A           L++   D+ A+N+ G TA DV + D
Sbjct: 224 DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED 275

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 57.0 bits (136), Expect = 1e-09
 Identities = 38/227 (16%), Positives = 66/227 (29%), Gaps = 61/227 (26%)

Query: 20  KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINII---- 75
           K   +       +CS G  E    LL+   D++   + +G T LH A I   ++++    
Sbjct: 35  KVKFDDGAVFLAACSSGDTEEVLRLLERGADINY-ANVDGLTALHQACIDDNVDMVKFLV 93

Query: 76  ----------------------------DEILSLNLQSAEMRTIHGETVLHLTVKNNQYE 107
                                        E L             G+T L +  +    E
Sbjct: 94  ENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEE 153

Query: 108 AVKYLMETLNIT------------------------KLANMPDNDGNTILHLATAGKLTT 143
            ++  +    +                                  G T LH+A A   T 
Sbjct: 154 LLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTE 213

Query: 144 MVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 190
           ++  L++   DVN  +  G+T L      A++ G  +    L E   
Sbjct: 214 VLKLLIQARYDVNIKDYDGWTPLHA----AAHWGKEEACRILVENLC 256

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 1e-09
 Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 3/134 (2%)

Query: 24  NGHTPLHLSCSKGHLEITRELLKLDPDLS---SLPDNEGRTPLHWAAIKGRINIIDEILS 80
           +G TPLH++  +G+L     L+ L         + +N  +TPLH A I    +++  +++
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 81  LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGK 140
                  +               +       L      T      + DG T LH+A   +
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 121

Query: 141 LTTMVIYLLKLGVD 154
               V  LL+ G D
Sbjct: 122 CQETVQLLLERGAD 135

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 2e-09
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 1   MHVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGR 60
            + +  + +LL         +  +G + LH +  +G L + R L++   D S L +    
Sbjct: 153 ENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS-LKNCHND 211

Query: 61  TPLHWAAIKGRINII 75
           TPL  A  +  I+I+
Sbjct: 212 TPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (122), Expect = 4e-08
 Identities = 42/227 (18%), Positives = 68/227 (29%), Gaps = 52/227 (22%)

Query: 1   MHVA------DIVKELLEARQEFAW---KKDLNGHTPLHLSCSK---------------- 35
           +H+A        V  L+   Q+        +    TPLHL+                   
Sbjct: 7   LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP 66

Query: 36  -----------------GHLEITRELLKL---DPDLSSLPDNEGRTPLHWAAIKGRINII 75
                                  R LL             + +G T LH A        +
Sbjct: 67  MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETV 126

Query: 76  DEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHL 135
             +L        +    G + L   V+NN    V+ L++        N     G++ LH 
Sbjct: 127 QLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV---NAQMYSGSSALHS 183

Query: 136 ATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 182
           A+   L  +V  L++ G D +  N    T L V    A +   + I+
Sbjct: 184 ASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV----ARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 128 DGNTILHLATAGKLTTMVIYLLKL----GVDVNAINRKGYTAL 166
           DG+T LH+A        V  L+ L    G +++  N    T L
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPL 44

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 18/110 (16%), Positives = 43/110 (39%), Gaps = 2/110 (1%)

Query: 1   MHVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGR 60
               + V+ LLE   +       +G +PL  +     L +  +LL       +     G 
Sbjct: 120 TECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM-VQLLLQHGANVNAQMYSGS 178

Query: 61  TPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVK 110
           + LH A+ +G + ++  ++      + ++  H +T L +       + ++
Sbjct: 179 SALHSASGRGLLPLVRTLVRSGA-DSSLKNCHNDTPLMVARSRRVIDILR 227

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.5 bits (116), Expect = 7e-08
 Identities = 34/165 (20%), Positives = 61/165 (36%), Gaps = 12/165 (7%)

Query: 22  DLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL 81
           DL     L  +   G  +  R L+      ++  D  G +PLH AA  G  +  + +L  
Sbjct: 1   DLG--KKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 82  NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKL 141
            +       +    +     + +       L    ++    N  D    T LH AT    
Sbjct: 57  GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV----NAKDMLKMTALHWATEHNH 112

Query: 142 TTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALE 186
             +V  L+K G DV+  ++   TA D+    + ++G   +   L+
Sbjct: 113 QEVVELLIKYGADVHTQSKFCKTAFDI----SIDNGNEDLAEILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 19  WKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEI 78
             KD+   T LH +    H E+   L+K   D+        +T    +   G  ++  EI
Sbjct: 94  NAKDMLKMTALHWATEHNHQEVVELLIKYGADVH-TQSKFCKTAFDISIDNGNEDLA-EI 151

Query: 79  L 79
           L
Sbjct: 152 L 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.6 bits (80), Expect = 0.004
 Identities = 5/26 (19%), Positives = 12/26 (46%), Gaps = 1/26 (3%)

Query: 21  KDLNGHTPLHLSCSKGHLEITRELLK 46
           +     T   +S   G+ ++  E+L+
Sbjct: 129 QSKFCKTAFDISIDNGNEDLA-EILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 7e-08
 Identities = 28/161 (17%), Positives = 57/161 (35%), Gaps = 10/161 (6%)

Query: 27  TPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA 86
             L  + ++G ++  R LL  +       +  G+T L           ++ +     +  
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELL-----KQG 58

Query: 87  EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVI 146
               +   +         +   +  L   +      N+PD  G   +HLA     T +V 
Sbjct: 59  ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS 118

Query: 147 YLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEE 187
           +L     D++  + +G T L++    A   GA  +V  L+ 
Sbjct: 119 FLAAES-DLHRRDARGLTPLEL----ALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 19  WKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEI 78
              D  G  P+HL+  +GH  +   L   + DL    D  G TPL  A  +G  +++D +
Sbjct: 95  NVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLH-RRDARGLTPLELALQRGAQDLVDIL 152

Query: 79  LS 80
             
Sbjct: 153 QG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 21/145 (14%), Positives = 36/145 (24%), Gaps = 7/145 (4%)

Query: 5   DIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLH 64
             V+ LL          +  G T L +            L +                  
Sbjct: 16  QEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDA 75

Query: 65  WAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM 124
                     +      ++    +    G   +HL V+      V +L    ++    + 
Sbjct: 76  ARTGFLDTLKVLVEHGADV---NVPDGTGALPIHLAVQEGHTAVVSFLAAESDL----HR 128

Query: 125 PDNDGNTILHLATAGKLTTMVIYLL 149
            D  G T L LA       +V  L 
Sbjct: 129 RDARGLTPLELALQRGAQDLVDILQ 153

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.3 bits (111), Expect = 4e-07
 Identities = 19/137 (13%), Positives = 32/137 (23%), Gaps = 9/137 (6%)

Query: 24  NGHTPLHLSCS---KGHLEITRELLKLDPDL-----SSLPDNEGRTPLHWAAIKGRINII 75
           +    LH  C       +    +      DL      +       T LH A        +
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 76  DEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHL 135
             +  L   S  +                  +  + L   L       + +  G T L +
Sbjct: 62  HIVDFLVQNSGNLDKQT-GKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 120

Query: 136 ATAGKLTTMVIYLLKLG 152
           A   K       L +  
Sbjct: 121 AKRLKHEHCEELLTQAL 137

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.0 bits (105), Expect = 2e-06
 Identities = 25/143 (17%), Positives = 45/143 (31%), Gaps = 12/143 (8%)

Query: 58  EGRTPLHWAAIKGRINIIDEILSLNLQSAEM--------RTIHGETVLHLTVKNNQYEAV 109
           +    LH      +   I  +L       ++             ET LHL V++    ++
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 110 KYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVV 169
             +   +  +   +     G+T LH          +  LL+    +   N  G T LD+ 
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI- 120

Query: 170 ESDASNSGALQIVPALEEAGARR 192
              A           L +A + R
Sbjct: 121 ---AKRLKHEHCEELLTQALSGR 140

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.7 bits (94), Expect = 7e-05
 Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 5/96 (5%)

Query: 22  DLNGHTPLHLSC---SKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEI 78
                T LHL+     +  L I   L++   +L            +            ++
Sbjct: 42  HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC--CLTDNAECLKL 99

Query: 79  LSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME 114
           L     S E+    GET L +  +       + L +
Sbjct: 100 LLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 135

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 4e-06
 Identities = 33/163 (20%), Positives = 65/163 (39%), Gaps = 9/163 (5%)

Query: 27  TPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA 86
             L  + ++G LE    LL+ + ++++  +  GRT L    +K     I   L L   + 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQV--MKLGNPEIARRLLLRGANP 59

Query: 87  EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVI 146
           +++   G  V+H   +    + ++ L+E      + +   N    +      G L  +  
Sbjct: 60  DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA--KEGHLRVVEF 117

Query: 147 YLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAG 189
            +     +V   N KG TA D+    A   G  ++V  ++  G
Sbjct: 118 LVKHTASNVGHRNHKGDTACDL----ARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 7e-04
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 19  WKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEI 78
             +D  G+ PLHL+  +GHL +   L+K         +++G T    A + GR  ++  +
Sbjct: 93  NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 152

Query: 79  LS 80
            +
Sbjct: 153 QA 154

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 4e-05
 Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 7/132 (5%)

Query: 61  TPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITK 120
             L  ++++G  +++  I+       +  ++  +  +            + +   +    
Sbjct: 3   ALLLDSSLEGEFDLVQRIIY----EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV 58

Query: 121 LANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK-GYTALDVVESDASNSGAL 179
             N  D+DG T LH A +     +  +L++ G  V A+      TA D  E      G  
Sbjct: 59  NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCE--EMEEGYT 116

Query: 180 QIVPALEEAGAR 191
           Q    L     +
Sbjct: 117 QCSQFLYGVQEK 128

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.001
 Identities = 19/123 (15%), Positives = 34/123 (27%), Gaps = 5/123 (4%)

Query: 27  TPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA 86
             L  + ++G +E  R LL+          N   +          +        L L  A
Sbjct: 5   DWLATAAARGRVEEVRALLEAGA-----NPNAPNSYGRRPIQVMMMGSARVAELLLLHGA 59

Query: 87  EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVI 146
           E       T+        +   +  L+         ++ D  G   + LA       +  
Sbjct: 60  EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVAR 119

Query: 147 YLL 149
           YL 
Sbjct: 120 YLR 122

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 23/124 (18%), Positives = 32/124 (25%), Gaps = 9/124 (7%)

Query: 27  TPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSA 86
                +   G L+  ++ +    D       EG       A       I E L L     
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGED--VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 61

Query: 87  EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVI 146
                H  T L   V       VK L+          +   DG T L           + 
Sbjct: 62  NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK---TVKGPDGLTALEATD----NQAIK 114

Query: 147 YLLK 150
            LL+
Sbjct: 115 ALLQ 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	445
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.94
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.94
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.93
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.93
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.9
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.9
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.9
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.89
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.89
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.89
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.87
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.86
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.84
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.84
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.83
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.83
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.82
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.81
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.8
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.73

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=5.9e-30  Score=236.85  Aligned_cols=183  Identities=24%  Similarity=0.230  Sum_probs=160.3

Q ss_pred             CHHHHHHHHHHhchh--hhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHH
Q 013339            2 HVADIVKELLEARQE--FAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEIL   79 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~--~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll   79 (445)
                      ++.++++.|++.+.+  ..+..|..|.||||+||..|+.++++.|+++|++++. +|.+|.||||+|+..|+.++++.|+
T Consensus        20 ~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~-~d~~g~tpL~~A~~~~~~~~~~~Ll   98 (255)
T d1oy3d_          20 QHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV-AERGGHTALHLACRVRAHTCACVLL   98 (255)
T ss_dssp             TCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-CCTTSCCHHHHHTTTTCHHHHHHHS
T ss_pred             CCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccc-cccccchhhhhhhccCchHHHHHHH
Confidence            578999999998754  4458899999999999999999999999999999976 8999999999999999999999987


Q ss_pred             hcCCC----------------------------------------------ccccccccCcchHhHHHHcCCHHHHHHHH
Q 013339           80 SLNLQ----------------------------------------------SAEMRTIHGETVLHLTVKNNQYEAVKYLM  113 (445)
Q Consensus        80 ~~~~~----------------------------------------------~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll  113 (445)
                      +....                                              ..+.+|.+|+||||+|+.+|+.+++++|+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll  178 (255)
T d1oy3d_          99 QPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR  178 (255)
T ss_dssp             SSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             hhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchh
Confidence            64321                                              01224667999999999999999999999


Q ss_pred             HhcCcccccC-CCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCcc
Q 013339          114 ETLNITKLAN-MPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARR  192 (445)
Q Consensus       114 ~~~~~~~~~n-~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~  192 (445)
                      +.   +...+ .++..|.||||+|+..++.+++++|+++|++++.+|..|.||||+    |...++.+++++|+++||+.
T Consensus       179 ~~---~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~----A~~~~~~~i~~~Ll~~Ga~~  251 (255)
T d1oy3d_         179 DA---GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS----ALLRPNPILARLLRAHGAPE  251 (255)
T ss_dssp             HH---TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH----HHTSSCHHHHHHHHHTTCCC
T ss_pred             cc---cccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHH----HHHCCCHHHHHHHHHcCCCC
Confidence            98   33344 457889999999999999999999999999999999999999999    66778899999999999963

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.8e-28  Score=222.94  Aligned_cols=183  Identities=28%  Similarity=0.357  Sum_probs=160.1

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |+.|.++.+++.++...+..|..|+||||+||..|+.+++++|++.+.+... .+..+.++++.|+..|+.++++.|+++
T Consensus        14 G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~Ll~~   92 (223)
T d1uoha_          14 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGRDEIVKALLGK   92 (223)
T ss_dssp             TCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCC-CCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccc-ccccccccccccccccccchhHHHhcc
Confidence            5778999999999998889999999999999999999999999998887766 677888999999999999999999988


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccC
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK  161 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~  161 (445)
                      + ..++..|.+|.||||+|+.+|+.+++++|+++   +.+++.+|.+|.||||+|+..++.+++++|++.+.+++..|..
T Consensus        93 ~-~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~---g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~  168 (223)
T d1uoha_          93 G-AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG---GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTE  168 (223)
T ss_dssp             T-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT
T ss_pred             C-ceeEeeCCCCCchhhHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCC
Confidence            7 46677888899999999999999999999887   6678888889999999999999999999888999999999999


Q ss_pred             CCCHHHHHhhhccccchhcHHHHHHHhcCccc
Q 013339          162 GYTALDVVESDASNSGALQIVPALEEAGARRC  193 (445)
Q Consensus       162 G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~  193 (445)
                      |+|||++|    ...++.+++++|++.|++..
T Consensus       169 g~TpL~~A----a~~g~~~~v~~LL~~Gad~~  196 (223)
T d1uoha_         169 GNTPLHLA----CDEERVEEAKLLVSQGASIY  196 (223)
T ss_dssp             CCCHHHHH----HHTTCHHHHHHHHHTTCCSC
T ss_pred             CCceeccc----cccCcHHHHHHHHHCCCCCC
Confidence            99999984    45567788999998887643

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.7e-27  Score=216.44  Aligned_cols=175  Identities=28%  Similarity=0.377  Sum_probs=161.0

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |+.|+++.+++...... ..+..+.++++.|+..|+.++++.|++++++++. +|.+|.||||+|+..|+.+++++|+++
T Consensus        48 g~~e~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~-~d~~g~tpL~~A~~~~~~e~~~~Ll~~  125 (223)
T d1uoha_          48 GHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA-VNQNGCTPLHYAASKNRHEIAVMLLEG  125 (223)
T ss_dssp             TCHHHHHHHHHHTCCSC-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             hhhcccccccccccccc-cccccccccccccccccccchhHHHhccCceeEe-eCCCCCchhhHHHHcCCHHHHHHHHHC
Confidence            67899999999887766 6677899999999999999999999999999876 899999999999999999999999999


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccC
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK  161 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~  161 (445)
                      + .+++.++..|.||||+|+..++.+++++|.+.   +..+|.+|.+|+||||+|+..++.+++++|++.|++++.+|..
T Consensus       126 g-~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~---~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~  201 (223)
T d1uoha_         126 G-ANPDAKDHYEATAMHRAAAKGNLKMIHILLYY---KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKE  201 (223)
T ss_dssp             T-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT
T ss_pred             C-CCCCCcCCCCCccchhhhhcCCcchhhhhccc---cceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCC
Confidence            8 56788899999999999999999999999887   6779999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhhhccccchhcHHHHHHH
Q 013339          162 GYTALDVVESDASNSGALQIVPALEE  187 (445)
Q Consensus       162 G~Tpl~~a~~~a~~~~~~~i~~~L~~  187 (445)
                      |+||||+    |. .++.++++.|++
T Consensus       202 g~tpl~~----A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         202 EKTPLQV----AK-GGLGLILKRMVE  222 (223)
T ss_dssp             SCCHHHH----CC-TTHHHHHHHHHC
T ss_pred             CCCHHHH----HH-CCCHHHHhcccC
Confidence            9999999    43 477778888874

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.5e-27  Score=216.87  Aligned_cols=180  Identities=25%  Similarity=0.312  Sum_probs=147.8

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCC--CCCCCCccHHHHHHHcCCHHHHHHHH
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS--LPDNEGRTPLHWAAIKGRINIIDEIL   79 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~--~~d~~G~TpLh~Aa~~G~~~iv~~Ll   79 (445)
                      |..++++.|++.++.....+|.+|+||||+|+..|+.+++++|+++|++++.  ..|..|.+|+|+|+..+..++++.++
T Consensus        11 g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (229)
T d1ixva_          11 NEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY   90 (229)
T ss_dssp             TCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccccccccccccc
Confidence            5679999999999888889999999999999999999999999999887642  24556666666666655555555444


Q ss_pred             -----------------------------------hcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCC
Q 013339           80 -----------------------------------SLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM  124 (445)
Q Consensus        80 -----------------------------------~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~  124 (445)
                                                         +.+ ......|..|+||||+|+.+|+.+++++|++..  ...+|.
T Consensus        91 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~--~~~in~  167 (229)
T d1ixva_          91 DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG-ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG--KSAVNW  167 (229)
T ss_dssp             SSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTT--CCCSCC
T ss_pred             cccccccccccccccccccccccccchhhhhhhhhhhc-ccccccCCCCCCccchhhhcccccccccccccc--cccccc
Confidence                                               443 233445778999999999999999999999863  356889


Q ss_pred             CCCCCCcHHHHHHhCCcHHHHHHHHh-cCCCccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCc
Q 013339          125 PDNDGNTILHLATAGKLTTMVIYLLK-LGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGAR  191 (445)
Q Consensus       125 ~d~~g~T~LHlA~~~~~~~iv~~Ll~-~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~  191 (445)
                      +|.+|+||||+|+..++.+++++|++ .|++++.+|.+|+||||+|    ..   .+++++|++.|++
T Consensus       168 ~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A----~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         168 QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA----LN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGC----SC---HHHHHHHHHHCCC
T ss_pred             cccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHH----hh---HHHHHHHHHcCCC
Confidence            99999999999999999999999995 6999999999999999994    32   3589999999875

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=4.2e-27  Score=210.79  Aligned_cols=173  Identities=27%  Similarity=0.323  Sum_probs=152.0

Q ss_pred             HHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHH-------
Q 013339            4 ADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIID-------   76 (445)
Q Consensus         4 ~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~-------   76 (445)
                      +|+|+.|++++++++...|.+|.||||+||..|+.++++.|++.|++++. ++..+.+|++.++..++.....       
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANS-QDNTGRTPLHAAVAADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccc-ccccccccccccccccccccccccccccc
Confidence            68999999999999866799999999999999999999999999999876 7888999999888877655433       


Q ss_pred             ---------------------------HHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCC
Q 013339           77 ---------------------------EILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDG  129 (445)
Q Consensus        77 ---------------------------~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g  129 (445)
                                                 .|...+ ...+.++..|.||||.++.++..++++.+++.   +..+|.+|.+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~---~~~~~~~d~~g  156 (209)
T d1ot8a_          81 TNLNARMHDGTTPLILAARLAIEGMVEDLITAD-ADINAADNSGKTALHWAAAVNNTEAVNILLMH---HANRDAQDDKD  156 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTC
T ss_pred             cccccccccccccccccccccchhhhhhhhhhc-ccccccCCCCCCcchhhcccCcceeeeeeccc---ccccccccccc
Confidence                                       333333 34456778899999999999999999999988   66789999999


Q ss_pred             CcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHHH
Q 013339          130 NTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPAL  185 (445)
Q Consensus       130 ~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L  185 (445)
                      +||||.|+..|+.+++++|+++|++++.+|..|+||||+    |...++.+++++|
T Consensus       157 ~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~----A~~~~~~~iv~lL  208 (209)
T d1ot8a_         157 ETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDV----ASERLHHDIVRLL  208 (209)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH----HHHTTCHHHHHHH
T ss_pred             ccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHH----HHHcCCHHHHhhc
Confidence            999999999999999999999999999999999999999    5556778899876

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=4.7e-27  Score=217.13  Aligned_cols=169  Identities=26%  Similarity=0.319  Sum_probs=146.7

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCC--CCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchH
Q 013339           20 KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLS--SLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVL   97 (445)
Q Consensus        20 ~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~--~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~L   97 (445)
                      ..|++|.||||+||+.|+.+++++|+++|++..  ..+|..|+||||+|+..|+.++++.|++.+ ..++..|.+|.|||
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~g-a~i~~~d~~g~tpL   82 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG-AGVLVAERGGHTAL   82 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCTTSCCHH
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccc-ccccccccccchhh
Confidence            468899999999999999999999999987643  347899999999999999999999999998 56788899999999


Q ss_pred             hHHHHcCCHHHHHHHHHhc--------------------------------------------CcccccCCCCCCCCcHH
Q 013339           98 HLTVKNNQYEAVKYLMETL--------------------------------------------NITKLANMPDNDGNTIL  133 (445)
Q Consensus        98 h~A~~~g~~~~v~~Ll~~~--------------------------------------------~~~~~~n~~d~~g~T~L  133 (445)
                      |+|+..++.+++++|++..                                            ..+..++.+|.+|.|||
T Consensus        83 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpL  162 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             hhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccc
Confidence            9999999999999986531                                            01224477899999999


Q ss_pred             HHHHhCCcHHHHHHHHhcCCCcccc-ccCCCCHHHHHhhhccccchhcHHHHHHHhcCccc
Q 013339          134 HLATAGKLTTMVIYLLKLGVDVNAI-NRKGYTALDVVESDASNSGALQIVPALEEAGARRC  193 (445)
Q Consensus       134 HlA~~~~~~~iv~~Ll~~g~~~~~~-n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~  193 (445)
                      |+|+..++.+++++|++.+++.+.. +..|.||||+|    ...++.+++++|+++|++..
T Consensus       163 h~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A----~~~~~~~~v~~Ll~~gadin  219 (255)
T d1oy3d_         163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLA----VEAQAASVLELLLKAGADPT  219 (255)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH----HHTTCHHHHHHHHHTTCCTT
T ss_pred             cccccccccccccchhccccccccccccccccccccc----ccccHHHHHHHHHHCCCCCC
Confidence            9999999999999999999998864 67899999994    45567889999999987643

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.1e-27  Score=212.74  Aligned_cols=183  Identities=25%  Similarity=0.319  Sum_probs=153.7

Q ss_pred             HHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCC-
Q 013339            6 IVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQ-   84 (445)
Q Consensus         6 ~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~-   84 (445)
                      +++.+...+.+++ ..|.+|+||||+||..|+.+++++|++.|+++.. +|.+|.||||.|+..|+.++++.+++.+.. 
T Consensus        21 li~~~~~~~~~in-~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~-~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~   98 (221)
T d1iknd_          21 VIRQVKGDLAFLN-FQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL-RDFRGNTPLHLACEQGCLASVGVLTQSCTTP   98 (221)
T ss_dssp             CCC-----CCCCC-CCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCC-CCTTCCCHHHHHHHHTCHHHHHHHHHSTTTT
T ss_pred             HHHHHHhCCCCcc-cCCCCCCccccccccccccccccccccccccccc-cccccccccccccccccccccchhhhhcccc
Confidence            3444555555544 7899999999999999999999999999999976 899999999999999999999999987532 


Q ss_pred             ----ccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCC-CCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccc
Q 013339           85 ----SAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMP-DNDGNTILHLATAGKLTTMVIYLLKLGVDVNAIN  159 (445)
Q Consensus        85 ----~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~-d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n  159 (445)
                          ........|.||||.|+..++.+.+++|++.   +..++.+ +.+|+||||+|+..|+.+++++|+++|+|++.+|
T Consensus        99 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~---~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~  175 (221)
T d1iknd_          99 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL---GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT  175 (221)
T ss_dssp             SSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH---TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCC
T ss_pred             cccccccccccccchhhhHHhhcCChhheeeeccc---CcccccccccCCCCccccccccccHHHHHHHHhcCCcccccC
Confidence                2233445689999999999999999999987   5555555 4679999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhhhccccchhcHHHHHHHhcCcccCCCC
Q 013339          160 RKGYTALDVVESDASNSGALQIVPALEEAGARRCDQLP  197 (445)
Q Consensus       160 ~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~~~~~  197 (445)
                      .+|+||+|+    +...++.+++++|.+.+.+.....+
T Consensus       176 ~~G~tpl~~----A~~~~~~~~~~~l~~~~~~~~~~~~  209 (221)
T d1iknd_         176 YQGYSPYQL----TWGRPSTRIQQQLGQLTLENLQMLP  209 (221)
T ss_dssp             TTCCCGGGG----CTTSSCHHHHHHHHTTSCGGGSSCC
T ss_pred             CCCCCHHHH----HHHCCCHHHHHHHHHcCCccccccc
Confidence            999999999    7777889999999998877654443

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.94  E-value=2.5e-26  Score=216.47  Aligned_cols=162  Identities=29%  Similarity=0.400  Sum_probs=121.9

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |+.|+|+.||+++.+++ ..|.+|+||||+|+..|+.++|++|++++++... .+..+.||||.|+..|+.++++.|++.
T Consensus        51 G~~~~v~~Ll~~Gadvn-~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~-~~~~~~~~L~~a~~~~~~~~~~~l~~~  128 (291)
T d1s70b_          51 GDTEEVLRLLERGADIN-YANVDGLTALHQACIDDNVDMVKFLVENGANINQ-PDNEGWIPLHAAASCGYLDIAEYLISQ  128 (291)
T ss_dssp             TCHHHHHHHHHHCCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHCCCCCC-ccCCCCCcHHHHHHhcCCceeeeeeccccccccc-ccccccccccccccccccchhhccccc
Confidence            67899999999998876 7899999999999999999999999999988765 788899999999999999999999987


Q ss_pred             CCCcccccc------------------------------------------------------------ccCcchHhHHH
Q 013339           82 NLQSAEMRT------------------------------------------------------------IHGETVLHLTV  101 (445)
Q Consensus        82 ~~~~~~~~~------------------------------------------------------------~~g~t~Lh~A~  101 (445)
                      +. .....|                                                            ..|.||||.|+
T Consensus       129 ~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~  207 (291)
T d1s70b_         129 GA-HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAA  207 (291)
T ss_dssp             TC-CTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHH
T ss_pred             Cc-ccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHH
Confidence            63 222333                                                            34556666666


Q ss_pred             HcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHH
Q 013339          102 KNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVV  169 (445)
Q Consensus       102 ~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a  169 (445)
                      ..|+.+++++|++.   +.++|.+|.+|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus       208 ~~~~~~~~~~Ll~~---g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A  272 (291)
T d1s70b_         208 AKGYTEVLKLLIQA---RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA  272 (291)
T ss_dssp             HHTCHHHHHHHHTT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred             HcCChhhhcccccc---eecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            66666666666654   455566666666666666666666666666666666666666666666663

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=9.2e-26  Score=192.63  Aligned_cols=153  Identities=27%  Similarity=0.377  Sum_probs=140.8

Q ss_pred             hHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCH
Q 013339           27 TPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQY  106 (445)
Q Consensus        27 TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~  106 (445)
                      +|||+||..|+.++|+.|+++|++++. +|.+|+||||+|+ .|+.++++.|++++ ...+..+.+|.++|+.++.+++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~-~d~~g~TpL~~A~-~~~~ei~~~Ll~~~-a~~~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQVMK-LGNPEIARRLLLRG-ANPDLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTC-CCTTSCCHHHHCC-SSCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCc-cCCcccccccccc-cccccccccccccc-cccccccccCccccccccccccc
Confidence            899999999999999999999999876 8999999999886 79999999999998 56788899999999999999999


Q ss_pred             HHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCC-CccccccCCCCHHHHHhhhccccchhcHHHHH
Q 013339          107 EAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGV-DVNAINRKGYTALDVVESDASNSGALQIVPAL  185 (445)
Q Consensus       107 ~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~-~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L  185 (445)
                      +.+++|+..   +..++..|..|.+|||.|+..++.+++++|++++. +.+.+|..|+||||+    +...++.+++++|
T Consensus        80 ~~~~~l~~~---~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~----A~~~~~~~iv~~L  152 (156)
T d1ihba_          80 DTLQTLLEF---QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL----ARLYGRNEVVSLM  152 (156)
T ss_dssp             HHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHH----HHHTTCHHHHHHH
T ss_pred             ccccccccc---cccccccccccccccccccccccccccccccccccccccccCCCCCCHHHH----HHHcCCHHHHHHH
Confidence            999999987   56688899999999999999999999999997775 899999999999999    5556788899999


Q ss_pred             HHhc
Q 013339          186 EEAG  189 (445)
Q Consensus       186 ~~~g  189 (445)
                      +++|
T Consensus       153 l~~G  156 (156)
T d1ihba_         153 QANG  156 (156)
T ss_dssp             HHTC
T ss_pred             HhcC
Confidence            9887

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.5e-25  Score=207.38  Aligned_cols=188  Identities=25%  Similarity=0.276  Sum_probs=142.6

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCC----------------------------
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS----------------------------   53 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~----------------------------   53 (445)
                      |+.|+|+.|++.+++++...+..|+||||+|+..|+.++++.|++.++....                            
T Consensus        16 ~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (285)
T d1wdya_          16 EDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKG   95 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhc
Confidence            6789999999999998877778899999999999999999999987654322                            


Q ss_pred             ----CCCCCCccHHHHHHHcCCHHHHHHHHhcCCCc---------cccccccCcchHhHHHHcCCHHHHHHHHHhcC---
Q 013339           54 ----LPDNEGRTPLHWAAIKGRINIIDEILSLNLQS---------AEMRTIHGETVLHLTVKNNQYEAVKYLMETLN---  117 (445)
Q Consensus        54 ----~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~---------~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~---  117 (445)
                          ..+..|.|+++.|+..|+...++.++......         ....+..|.||||+|+++|+.+++++|+++.+   
T Consensus        96 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i  175 (285)
T d1wdya_          96 ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV  175 (285)
T ss_dssp             CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT
T ss_pred             ccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCc
Confidence                12344555555555555555555555443211         01123346677777777777777776664310   


Q ss_pred             --------------------------------cccccCCCCCCCCcHHHHHHhCCcHHHHHHHHh-cCCCccccccCCCC
Q 013339          118 --------------------------------ITKLANMPDNDGNTILHLATAGKLTTMVIYLLK-LGVDVNAINRKGYT  164 (445)
Q Consensus       118 --------------------------------~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~-~g~~~~~~n~~G~T  164 (445)
                                                      .+..+|.+|.+|.||||.|+..++.+++++|++ .|++++.+|.+|.|
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~T  255 (285)
T d1wdya_         176 NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKT  255 (285)
T ss_dssp             TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCC
T ss_pred             ccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCC
Confidence                                            144567889999999999999999999999996 69999999999999


Q ss_pred             HHHHHhhhccccchhcHHHHHHHhcCccc
Q 013339          165 ALDVVESDASNSGALQIVPALEEAGARRC  193 (445)
Q Consensus       165 pl~~a~~~a~~~~~~~i~~~L~~~ga~~~  193 (445)
                      |||+    |...++.+++++|+++||++.
T Consensus       256 pL~~----A~~~~~~eiv~~Ll~~GAd~n  280 (285)
T d1wdya_         256 ALLL----AVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             HHHH----HHHTTCHHHHHHHHHHSSCSC
T ss_pred             HHHH----HHHcCCHHHHHHHHHCCCCCC
Confidence            9999    556678999999999999864

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.3e-25  Score=191.06  Aligned_cols=151  Identities=26%  Similarity=0.301  Sum_probs=137.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcC
Q 013339           25 GHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNN  104 (445)
Q Consensus        25 G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g  104 (445)
                      +.||||.||+.|+.++|+.||++|++..  .|..|+||||+|+..++.++++.++...+ .....+..+.++++.++...
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGV-SRDARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTC-CTTCCCTTCCCHHHHHHHHT
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCCcc--cccCCCccccccccccccccccccccccc-cccccccccccccccccccc
Confidence            3499999999999999999999999875  69999999999999999999999998874 34556677889999999999


Q ss_pred             CHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHH
Q 013339          105 QYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPA  184 (445)
Q Consensus       105 ~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~  184 (445)
                      +.+.+++++..   +...+.+|.+|+||||+|+..++.+++++|++.|++++..|..|.|||++    |...++.+++++
T Consensus        79 ~~~~~~~l~~~---~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~----A~~~g~~eiv~l  151 (153)
T d1awcb_          79 HANIVEVLLKH---GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDI----SIDNGNEDLAEI  151 (153)
T ss_dssp             CHHHHHHHHTT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH----HHHTTCHHHHHH
T ss_pred             cceeeeccccc---CCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHH----HHHcCCHHHHHh
Confidence            99999999887   66788899999999999999999999999999999999999999999999    556678888887


Q ss_pred             H
Q 013339          185 L  185 (445)
Q Consensus       185 L  185 (445)
                      |
T Consensus       152 L  152 (153)
T d1awcb_         152 L  152 (153)
T ss_dssp             H
T ss_pred             C
Confidence            6

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.93  E-value=3.3e-25  Score=206.74  Aligned_cols=178  Identities=24%  Similarity=0.329  Sum_probs=148.7

Q ss_pred             HHHHHHHHH--------HhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHH
Q 013339            3 VADIVKELL--------EARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINI   74 (445)
Q Consensus         3 ~~d~v~~Ll--------~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~i   74 (445)
                      +.|+|+.|+        +.+.+++ .+|.+|+||||+|+..|+.++|++|+++|++++. +|.+|.||||+|+..|+.++
T Consensus        45 ~~~~v~~Ll~~~~~~~l~~Gadvn-~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~-~~~~g~t~l~~a~~~~~~~~  122 (277)
T d2fo1e1          45 SAEKSEDLIVHEAKECIAAGADVN-AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI-YNKSERSALHQAAANRDFGM  122 (277)
T ss_dssp             CCSCCTTHHHHHHHHHHHTCCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTCCCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHhcchhHHHHcCCCcc-ccCCCCCeeecccccccccccccccccccccccc-ccccccccccchhhhcchhh
Confidence            445555554        4444555 7899999999999999999999999999999876 89999999999999999998


Q ss_pred             HHHHHhcCCC----------------------------------------------ccccccccCcchHhHHHHcCCHHH
Q 013339           75 IDEILSLNLQ----------------------------------------------SAEMRTIHGETVLHLTVKNNQYEA  108 (445)
Q Consensus        75 v~~Ll~~~~~----------------------------------------------~~~~~~~~g~t~Lh~A~~~g~~~~  108 (445)
                      ++.+......                                              .....+..|.||||.++..++.+.
T Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~  202 (277)
T d2fo1e1         123 MVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPI  202 (277)
T ss_dssp             HHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHH
T ss_pred             hhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccc
Confidence            8877653210                                              001124468999999999999999


Q ss_pred             HHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHHHHHh
Q 013339          109 VKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEA  188 (445)
Q Consensus       109 v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~  188 (445)
                      +++++...  +...+.+|..|.||||+|+..++.+++++|+++|++++.+|.+|.||||+    |...++.+++++|++.
T Consensus       203 ~~~~l~~~--~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~----A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         203 VKYLVGEK--GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQL----AQANNHHNIVDIFDRC  276 (277)
T ss_dssp             HHHHHHHS--CCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHH----HHHTTCHHHHHHHHTT
T ss_pred             cccccccc--cccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHH----HHHcCCHHHHHHHHHh
Confidence            99877653  55678899999999999999999999999999999999999999999999    5667788999999753

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.3e-25  Score=199.47  Aligned_cols=84  Identities=27%  Similarity=0.329  Sum_probs=61.1

Q ss_pred             cCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhh
Q 013339           92 HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVES  171 (445)
Q Consensus        92 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~  171 (445)
                      .|.++||.|+..+..++++.+++.   +...+.+|.+|+||||+|+..|+.+++++|+++|++++.+|.+|.|||++   
T Consensus       143 ~~~~~l~~a~~~~~~~~~~~~~~~---~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~---  216 (228)
T d1k1aa_         143 SGRSPLIHAVENNSLSMVQLLLQH---GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV---  216 (228)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTT---
T ss_pred             chhhHHHHHHHhhhhhhhhhhhhh---ccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHH---
Confidence            466777777777777777777765   55567777777888888887777787877777777777777778888777   


Q ss_pred             hccccchhcHH
Q 013339          172 DASNSGALQIV  182 (445)
Q Consensus       172 ~a~~~~~~~i~  182 (445)
                       |...++.+++
T Consensus       217 -A~~~~~~div  226 (228)
T d1k1aa_         217 -ARSRRVIDIL  226 (228)
T ss_dssp             -CSSHHHHHHH
T ss_pred             -HHhCCCcccc
Confidence             5555555554

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.9e-25  Score=212.22  Aligned_cols=149  Identities=26%  Similarity=0.322  Sum_probs=119.8

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCH---HHHHHHHhcCCCccccccccCcch
Q 013339           20 KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRI---NIIDEILSLNLQSAEMRTIHGETV   96 (445)
Q Consensus        20 ~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~---~iv~~Ll~~~~~~~~~~~~~g~t~   96 (445)
                      ..|.+|+||||+||..|+.++|+.|+++|++++. +|..|+||||.|+..|+.   +.++.+++........+|..|+||
T Consensus       102 ~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~-~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~  180 (301)
T d1sw6a_         102 PVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY-GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTI  180 (301)
T ss_dssp             CCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTB-CCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc-CCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCH
Confidence            4489999999999999999999999999999976 899999999999987752   233344444334567788999999


Q ss_pred             HhHHHHcCC----HHHHH--------HHHHhcC----------------------------------cccccCCCCCCCC
Q 013339           97 LHLTVKNNQ----YEAVK--------YLMETLN----------------------------------ITKLANMPDNDGN  130 (445)
Q Consensus        97 Lh~A~~~g~----~~~v~--------~Ll~~~~----------------------------------~~~~~n~~d~~g~  130 (445)
                      ||.++..+.    ...++        .+.....                                  ....+|.+|.+|+
T Consensus       181 lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~  260 (301)
T d1sw6a_         181 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGD  260 (301)
T ss_dssp             HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSC
T ss_pred             HHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCC
Confidence            998886443    33333        2222210                                  0112689999999


Q ss_pred             cHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHH
Q 013339          131 TILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVV  169 (445)
Q Consensus       131 T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a  169 (445)
                      ||||+|++.|+.+++++|++.|++++..|+.|+||||+|
T Consensus       261 TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A  299 (301)
T d1sw6a_         261 TCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG  299 (301)
T ss_dssp             CHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHc
Confidence            999999999999999999999999999999999999985

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.6e-24  Score=185.28  Aligned_cols=151  Identities=25%  Similarity=0.339  Sum_probs=132.5

Q ss_pred             hHHHHHHHcCCHHHHHHHhhc-CCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCC
Q 013339           27 TPLHLSCSKGHLEITRELLKL-DPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQ  105 (445)
Q Consensus        27 TpLH~Aa~~g~~~iv~~LL~~-~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~  105 (445)
                      +.||.||..|+.++|+.||+. +.+++. +|..|+||||+|+ .|+.+++++|++.+ ...+..+.+|.+|++.++..++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~-~d~~g~t~L~~A~-~~~~~~v~~Ll~~~-~~~~~~~~~~~~~l~~~~~~~~   80 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDA-LNRFGKTALQVMM-FGSTAIALELLKQG-ASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTC-CCTTSCCHHHHSC-TTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCc-cCCCCCccccccc-cccccccccccccc-cccccccccccccccccccccc
Confidence            459999999999999999986 556544 8999999999886 58899999999987 4567788889999999999999


Q ss_pred             HHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHHH
Q 013339          106 YEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPAL  185 (445)
Q Consensus       106 ~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L  185 (445)
                      .+++++++++   +..+|.+|.+|+||||+|+..++.+++++|+ .|++++.+|..|+||||+    |...++.+++++|
T Consensus        81 ~~~~~~~l~~---~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~----A~~~g~~~iv~~L  152 (156)
T d1bd8a_          81 LDTLKVLVEH---GADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLEL----ALQRGAQDLVDIL  152 (156)
T ss_dssp             HHHHHHHHHT---TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHH----HHHSCCHHHHHHH
T ss_pred             cccccccccc---ccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHH----HHHcCCHHHHHHH
Confidence            9999999987   6678899999999999999999999999877 689999999999999999    5667788899999


Q ss_pred             HHh
Q 013339          186 EEA  188 (445)
Q Consensus       186 ~~~  188 (445)
                      +++
T Consensus       153 l~h  155 (156)
T d1bd8a_         153 QGH  155 (156)
T ss_dssp             HTT
T ss_pred             Hhh
Confidence            865

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.8e-24  Score=181.73  Aligned_cols=143  Identities=23%  Similarity=0.242  Sum_probs=130.0

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |+.|+|++|++.++...+..|..|+||||+|+ .|+.+++++|++++.+++. .+..|.+|++.++..++.++++.+++.
T Consensus        13 g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~l~~   90 (156)
T d1bd8a_          13 GDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNV-QDTSGTSPVHDAARTGFLDTLKVLVEH   90 (156)
T ss_dssp             TCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccccc-ccccccccccccccccccccccccccc
Confidence            57899999999876656688999999999987 4899999999999999876 788999999999999999999999999


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhc
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKL  151 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~  151 (445)
                      + ..++.+|..|+||||+|+..|+.+++++|++    +.+++.+|.+|+||||+|+..|+.+++++|+++
T Consensus        91 ~-~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~----~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          91 G-ADVNVPDGTGALPIHLAVQEGHTAVVSFLAA----ESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             T-CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT----TSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             c-cccccccCCCCeeeccccccccccccccccc----cccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            8 4567789999999999999999999999874    457899999999999999999999999999864

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.90  E-value=9.8e-24  Score=198.43  Aligned_cols=165  Identities=22%  Similarity=0.271  Sum_probs=144.9

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHH
Q 013339           23 LNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVK  102 (445)
Q Consensus        23 ~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~  102 (445)
                      .+|.||||.||..|+.++|+.||++|++++. +|.+|+||||+|+..|+.+++++|++++. .....+..+.+|||.|+.
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~-~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~-~~~~~~~~~~~~L~~a~~  115 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADINY-ANVDGLTALHQACIDDNVDMVKFLVENGA-NINQPDNEGWIPLHAAAS  115 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTTC-BCTTCCBHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCCCc-cCCCCCcHHHHHHhcCCceeeeeeccccc-cccccccccccccccccc
Confidence            3467999999999999999999999999876 89999999999999999999999999984 456677889999999999


Q ss_pred             cCCHHHHHHHHHhcCcc---------------------------------------------------------cccCCC
Q 013339          103 NNQYEAVKYLMETLNIT---------------------------------------------------------KLANMP  125 (445)
Q Consensus       103 ~g~~~~v~~Ll~~~~~~---------------------------------------------------------~~~n~~  125 (445)
                      .++.++++.|++.....                                                         ......
T Consensus       116 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (291)
T d1s70b_         116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH  195 (291)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred             ccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccc
Confidence            99999999998752100                                                         012446


Q ss_pred             CCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCccc
Q 013339          126 DNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRC  193 (445)
Q Consensus       126 d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~  193 (445)
                      +.+|.||||.|+..++.+++++|++.|++++.++..|.||||+    |...++.+++++|+++|++..
T Consensus       196 ~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~----A~~~g~~~iv~lLl~~Gadv~  259 (291)
T d1s70b_         196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHA----AAHWGKEEACRILVENLCDME  259 (291)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHH----HHHTTCHHHHHHHHHTTCCTT
T ss_pred             cCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHH----HHHcCCHHHHHHHHHCCCCCC
Confidence            6789999999999999999999999999999999999999999    556678899999999998764

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.6e-23  Score=178.56  Aligned_cols=145  Identities=21%  Similarity=0.287  Sum_probs=133.5

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |+.|+|+.|++++.+++ .+|.+|.||||+|+ .|+.+++++|+++++++.. ++..|.+||+.++..|+.++++.+++.
T Consensus        12 g~~~~v~~Ll~~g~d~n-~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~-~~~~~~~~l~~~~~~~~~~~~~~l~~~   88 (156)
T d1ihba_          12 GDLEQLTSLLQNNVNVN-AQNGFGRTALQVMK-LGNPEIARRLLLRGANPDL-KDRTGFAVIHDAARAGFLDTLQTLLEF   88 (156)
T ss_dssp             TCHHHHHHHTTSCCCTT-CCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHCCCCcC-ccCCcccccccccc-ccccccccccccccccccc-ccccCcccccccccccccccccccccc
Confidence            67899999999999876 78999999999886 7999999999999999865 899999999999999999999999998


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcC
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG  152 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g  152 (445)
                      + ...+..+..|.+|||+|+..++.+++++|+++.  +.+.+.+|.+|.||||+|+..++.+++++|+++|
T Consensus        89 ~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~--~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          89 Q-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT--ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             T-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS--CCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             c-ccccccccccccccccccccccccccccccccc--cccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            8 457778899999999999999999999999984  2467899999999999999999999999999876

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=3.6e-23  Score=187.50  Aligned_cols=161  Identities=27%  Similarity=0.340  Sum_probs=129.4

Q ss_pred             ChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCc--cccccccCcchHhHHHHc
Q 013339           26 HTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQS--AEMRTIHGETVLHLTVKN  103 (445)
Q Consensus        26 ~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~--~~~~~~~g~t~Lh~A~~~  103 (445)
                      +||||+||..|+.++++.||+.++.....+|.+|+||||+|+..|+.+++++|+++++..  ....+..|.+|+|+++..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            589999999999999999999766555669999999999999999999999999987432  233444566666665555


Q ss_pred             CCHHHHH-----------------------------------HHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHH
Q 013339          104 NQYEAVK-----------------------------------YLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYL  148 (445)
Q Consensus       104 g~~~~v~-----------------------------------~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~L  148 (445)
                      +..++++                                   +|++.   +...+.+|.+|+||||+|+..++.+++++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~---~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  157 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN---GASVRIKDKFNQIPLHRAASVGSLKLIELL  157 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCSCCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhh---cccccccCCCCCCccchhhhcccccccccc
Confidence            5555544                                   44443   445677899999999999999999999999


Q ss_pred             HhcC-CCccccccCCCCHHHHHhhhccccchhcHHHHHHH-hcCccc
Q 013339          149 LKLG-VDVNAINRKGYTALDVVESDASNSGALQIVPALEE-AGARRC  193 (445)
Q Consensus       149 l~~g-~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~-~ga~~~  193 (445)
                      ++.+ .+++.+|.+|+||||+|    ...++.+++++|++ .|++..
T Consensus       158 l~~~~~~in~~d~~g~TpLh~A----~~~~~~~~v~~Ll~~~gad~~  200 (229)
T d1ixva_         158 CGLGKSAVNWQDKQGWTPLFHA----LAEGHGDAAVLLVEKYGAEYD  200 (229)
T ss_dssp             HTTTCCCSCCCCTTSCCHHHHH----HHTTCHHHHHHHHHHHCCCSC
T ss_pred             cccccccccccccccCCchhhh----cccccHHHHHHHHHhcCCCCC
Confidence            9776 78899999999999994    45678889999986 587643

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.4e-23  Score=200.85  Aligned_cols=160  Identities=28%  Similarity=0.411  Sum_probs=140.4

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhH
Q 013339           20 KKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHL   99 (445)
Q Consensus        20 ~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~   99 (445)
                      ..+..|.||||+|+..++.++++.+++.+..... .|..|.||||.|+..++.+++++|++++ ...+..+..+.||||.
T Consensus       226 ~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~l~~a~~~~~~~i~~~Ll~~g-~~~~~~~~~~~t~L~~  303 (408)
T d1n11a_         226 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL-GNKSGLTPLHLVAQEGHVPVADVLIKHG-VMVDATTRMGYTPLHV  303 (408)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCSSCCCHHHH
T ss_pred             ccCCCCCCHHHHHHHhCcHhHhhhhhcccccccc-ccCCCCChhhhhhhcCcHHHHHHHHHCC-Cccccccccccccchh
Confidence            4566678888888888888888888888777765 7888999999999999999999999887 4567777788999999


Q ss_pred             HHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchh
Q 013339          100 TVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGAL  179 (445)
Q Consensus       100 A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~  179 (445)
                      ++..++.++++++++.   +..+|.+|.+|+||||+|++.|+.+++++|+++|++++.+|.+|.||||+    |...++.
T Consensus       304 ~~~~~~~~~~~~ll~~---g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~----A~~~~~~  376 (408)
T d1n11a_         304 ASHYGNIKLVKFLLQH---QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI----AKRLGYI  376 (408)
T ss_dssp             HHHSSCSHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHH----HHHTTCH
T ss_pred             hcccCcceeeeeeccc---cccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHH----HHHcCCH
Confidence            9999999999999987   77899999999999999999999999999999999999999999999999    4556778


Q ss_pred             cHHHHHHHh
Q 013339          180 QIVPALEEA  188 (445)
Q Consensus       180 ~i~~~L~~~  188 (445)
                      +++++|...
T Consensus       377 ~iv~~L~~~  385 (408)
T d1n11a_         377 SVTDVLKVV  385 (408)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888888654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.89  E-value=1.4e-23  Score=195.51  Aligned_cols=165  Identities=21%  Similarity=0.327  Sum_probs=141.4

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHH--------hhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccC
Q 013339           22 DLNGHTPLHLSCSKGHLEITREL--------LKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHG   93 (445)
Q Consensus        22 d~~G~TpLH~Aa~~g~~~iv~~L--------L~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g   93 (445)
                      +++|+||||+||..|+.++|+.|        ++.|++++. +|.+|+||||+|+..|+.+++++|+++| .+++.+|.+|
T Consensus        30 ~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~-~d~~G~TpLh~A~~~g~~~iv~~Ll~~G-ad~n~~~~~g  107 (277)
T d2fo1e1          30 PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA-MDCDENTPLMLAVLARRRRLVAYLMKAG-ADPTIYNKSE  107 (277)
T ss_dssp             CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTC
T ss_pred             CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccc-cCCCCCeeeccccccccccccccccccc-cccccccccc
Confidence            35699999999999999988877        456889987 8999999999999999999999999998 5678889999


Q ss_pred             cchHhHHHHcCCHHHHHHHHHhcC--------------------------------------------cccccCCCCCCC
Q 013339           94 ETVLHLTVKNNQYEAVKYLMETLN--------------------------------------------ITKLANMPDNDG  129 (445)
Q Consensus        94 ~t~Lh~A~~~g~~~~v~~Ll~~~~--------------------------------------------~~~~~n~~d~~g  129 (445)
                      +||||.|+..++.++++++.....                                            .....+..+.+|
T Consensus       108 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  187 (277)
T d2fo1e1         108 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKG  187 (277)
T ss_dssp             CCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCC
T ss_pred             cccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCC
Confidence            999999999999998888754210                                            011235567789


Q ss_pred             CcHHHHHHhCCcHHHHHHHH-hcCCCccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCcc
Q 013339          130 NTILHLATAGKLTTMVIYLL-KLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGARR  192 (445)
Q Consensus       130 ~T~LHlA~~~~~~~iv~~Ll-~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~  192 (445)
                      .||||.++..++.+++++++ ..+.+.+..|..|.|||++    |...++.+++++|++.|++.
T Consensus       188 ~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~----A~~~g~~~iv~~Ll~~gadi  247 (277)
T d2fo1e1         188 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIML----AAQEGRIEVVMYLIQQGASV  247 (277)
T ss_dssp             CCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHH----HHHHTCHHHHHHHHHTTCCS
T ss_pred             CCccccccccccccccccccccccccccccCCCCCCHHHH----HHHcCCHHHHHHHHHCcCCC
Confidence            99999999999999998866 8899999999999999999    45557788999999999875

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.6e-22  Score=198.79  Aligned_cols=181  Identities=27%  Similarity=0.379  Sum_probs=155.5

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |+.|+|+.|++.+.+++ ..|..|+||||+||..|+.++|++||++|++++. +|.+|+||||+|+..|+.++++.|+..
T Consensus        11 g~~~~v~~Ll~~g~~in-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~-~~~~g~t~L~~A~~~g~~~~~~~Ll~~   88 (408)
T d1n11a_          11 GHLPIVKNLLQRGASPN-VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA-KAKDDQTPLHCAARIGHTNMVKLLLEN   88 (408)
T ss_dssp             TCHHHHHHHHHTTCCSC-CSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSC-CCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            67899999999988776 7789999999999999999999999999999876 899999999999999999999999875


Q ss_pred             CCCc--------------------------------cccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCC
Q 013339           82 NLQS--------------------------------AEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDG  129 (445)
Q Consensus        82 ~~~~--------------------------------~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g  129 (445)
                      .+..                                ....+..+.++|+.|+..++.+++++|+++   +..++..+.+|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~---~~~~~~~~~~~  165 (408)
T d1n11a_          89 NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER---DAHPNAAGKNG  165 (408)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCSSC
T ss_pred             hhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHc---CCCCCcCCCcC
Confidence            5321                                123456788999999999999999999987   67788899999


Q ss_pred             CcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCc
Q 013339          130 NTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGAR  191 (445)
Q Consensus       130 ~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~  191 (445)
                      .+|||.|+..++.+++++|+++|++++..+..|.||++.+.    .....++...+...+..
T Consensus       166 ~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~----~~~~~~~~~~l~~~~~~  223 (408)
T d1n11a_         166 LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAA----KQNQVEVARSLLQYGGS  223 (408)
T ss_dssp             CCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHH----HTTCHHHHHHHHHTTCC
T ss_pred             chHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhh----ccchhhhhhhhhhcccc
Confidence            99999999999999999999999999999999999999843    34455566777665543

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2e-23  Score=171.63  Aligned_cols=121  Identities=17%  Similarity=0.204  Sum_probs=109.6

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCc-chHhHHHH
Q 013339           24 NGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGE-TVLHLTVK  102 (445)
Q Consensus        24 ~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~-t~Lh~A~~  102 (445)
                      .+.++||+||..|+.++|+.|+++|++++. +|.+|.||||+|+ .|+.+++++|++++. .++..+..|. ||||+|++
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~-~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga-~~~~~~~~~~~~~L~~A~~   78 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANPNA-PNSYGRRPIQVMM-MGSARVAELLLLHGA-EPNCADPATLTRPVHDAAR   78 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTC-CCSSSCCTTTSSC-TTCHHHHHHHHTTTC-CCCCCCTTTCCCHHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCcccc-ccccccccccccc-ccccccccccccccc-ccccccccccccccccccc
Confidence            467899999999999999999999999976 8999999999775 799999999999984 5666676665 69999999


Q ss_pred             cCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHh
Q 013339          103 NNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLK  150 (445)
Q Consensus       103 ~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~  150 (445)
                      +|+.+++++|++.   +.+++.+|.+|+||||+|+..|+.+++++|+.
T Consensus        79 ~g~~~~v~~Ll~~---ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          79 EGFLDTLVVLHRA---GARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HTCHHHHHHHHHH---TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccc---ccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999998   77899999999999999999999999999874

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.6e-23  Score=189.32  Aligned_cols=164  Identities=29%  Similarity=0.367  Sum_probs=138.4

Q ss_pred             CCChHHHHHHHcCCHHHHH----HHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhH
Q 013339           24 NGHTPLHLSCSKGHLEITR----ELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHL   99 (445)
Q Consensus        24 ~G~TpLH~Aa~~g~~~iv~----~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~   99 (445)
                      +|+||||+|+..|+.++++    .+...+.+++. +|.+|+||||+|+..|+.+++++|++.+ .+.+.+|..|.||||.
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~-~d~~g~TpLh~A~~~~~~~iv~~L~~~g-~d~~~~d~~g~t~l~~   78 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNF-QNNLQQTPLHLAVITNQPEIAEALLGAG-CDPELRDFRGNTPLHL   78 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCC-CCTTCCCHHHHHHHTTCHHHHHCCCSCC-CCSCCCCTTCCCHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCccc-CCCCCCcccccccccccccccccccccc-cccccccccccccccc
Confidence            5999999999999975555    45556778765 8999999999999999999999999998 5678889999999999


Q ss_pred             HHHcCCHHHHHHHHHhcCc---ccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccc-cCCCCHHHHHhhhccc
Q 013339          100 TVKNNQYEAVKYLMETLNI---TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAIN-RKGYTALDVVESDASN  175 (445)
Q Consensus       100 A~~~g~~~~v~~Ll~~~~~---~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n-~~G~Tpl~~a~~~a~~  175 (445)
                      |+..|+.++++.|++....   ....+....+|.||||.|+..++.+++++|+..|..++..+ ..|.||||+    +..
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~----A~~  154 (221)
T d1iknd_          79 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL----AVD  154 (221)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHH----HHH
T ss_pred             ccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCcccc----ccc
Confidence            9999999999999986422   23445567789999999999999999999999999998776 579999999    556


Q ss_pred             cchhcHHHHHHHhcCccc
Q 013339          176 SGALQIVPALEEAGARRC  193 (445)
Q Consensus       176 ~~~~~i~~~L~~~ga~~~  193 (445)
                      .++.+++++|+++|++..
T Consensus       155 ~g~~~~v~~Ll~~gad~~  172 (221)
T d1iknd_         155 LQNPDLVSLLLKCGADVN  172 (221)
T ss_dssp             TTCHHHHHHHHTTTCCSC
T ss_pred             cccHHHHHHHHhcCCccc
Confidence            778899999999998754

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=6.2e-22  Score=167.91  Aligned_cols=140  Identities=25%  Similarity=0.353  Sum_probs=128.9

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSL   81 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~   81 (445)
                      |+.|+|+.||+.+++.+  .|..|+||||+|+..++.++++.++........ .+..+.++++.++...+.++++.+...
T Consensus        13 g~~~~v~~LL~~ga~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~   89 (153)
T d1awcb_          13 GQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA-RTKVDRTPLHMAASEGHANIVEVLLKH   89 (153)
T ss_dssp             TCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             CCHHHHHHHHHcCCCcc--cccCCCccccccccccccccccccccccccccc-cccccccccccccccccceeeeccccc
Confidence            67899999999998764  689999999999999999999999998877755 678889999999999999999999998


Q ss_pred             CCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHH
Q 013339           82 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYL  148 (445)
Q Consensus        82 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~L  148 (445)
                      + .....+|.+|.||||+|+..|+.+++++|++.   +.++|.+|.+|.||||+|+.+|+.+++++|
T Consensus        90 ~-~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~---gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          90 G-ADVNAKDMLKMTALHWATEHNHQEVVELLIKY---GADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             T-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             C-CccccccccCchHHHhhhhcchhheeeecccc---ccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            8 46677899999999999999999999999988   778999999999999999999999999876

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=1e-23  Score=171.57  Aligned_cols=105  Identities=27%  Similarity=0.347  Sum_probs=64.1

Q ss_pred             ChHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCC
Q 013339           26 HTPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQ  105 (445)
Q Consensus        26 ~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~  105 (445)
                      .|||++|++.|+.++|+.|+++|++++. +|.+|+||||+|+..|+.++++++++++                       
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~-~~~~g~t~lh~A~~~~~~~~~~~ll~~g-----------------------   58 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNR-TLEGGRKPLHYAADCGQLEILEFLLLKG-----------------------   58 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCC-CSSSSCCTTHHHHHHSTTTHHHHHHHSS-----------------------
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcccc-cccccccccccccccccccccccccccc-----------------------
Confidence            3666677777777777777766666654 5666666666666666666666666655                       


Q ss_pred             HHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHH
Q 013339          106 YEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV  168 (445)
Q Consensus       106 ~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~  168 (445)
                                    .++|.+|.+|+||||+|+..++.+++++|+++|++++.+|.+|.||+|+
T Consensus        59 --------------~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~  107 (118)
T d1myoa_          59 --------------ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEA  107 (118)
T ss_dssp             --------------CTTTCCSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCT
T ss_pred             --------------ceeeecccccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHH
Confidence                          3344555555555555555555555555555555555555555555555

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=1.1e-22  Score=165.35  Aligned_cols=94  Identities=24%  Similarity=0.276  Sum_probs=86.0

Q ss_pred             cchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhc
Q 013339           94 ETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDA  173 (445)
Q Consensus        94 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a  173 (445)
                      +|||++|+++|+.+++++|+++   +.++|.+|.+|+||||+|+..++.+++++|++.|++++.+|..|+||||+    +
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~---g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~----A   75 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAK---GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLS----A   75 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTT---TCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHH----H
T ss_pred             ChHHHHHHHCCCHHHHHHHHHh---hhccccccccccccccccccccccccccccccccceeeecccccccchhh----h
Confidence            5899999999999999999987   67789999999999999999999999999999999999999999999999    5


Q ss_pred             cccchhcHHHHHHHhcCcccC
Q 013339          174 SNSGALQIVPALEEAGARRCD  194 (445)
Q Consensus       174 ~~~~~~~i~~~L~~~ga~~~~  194 (445)
                      ...++.+++++|++.|++...
T Consensus        76 ~~~~~~~~v~~Ll~~Gad~~~   96 (118)
T d1myoa_          76 VYEGHVSCVKLLLSKGADKTV   96 (118)
T ss_dssp             HTTTCCHHHHHHHTTCCCSSS
T ss_pred             hhcCchhhhhhhhccccccee
Confidence            567788999999999987653

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.3e-22  Score=164.16  Aligned_cols=118  Identities=22%  Similarity=0.258  Sum_probs=69.0

Q ss_pred             hHHHHHHHcCCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCH
Q 013339           27 TPLHLSCSKGHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQY  106 (445)
Q Consensus        27 TpLH~Aa~~g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~  106 (445)
                      ++||.||..|+.++|+.|+++|++++. +|.+|+||||+|+..|+.++++.|++.+ .+.+.+|.+|+||||+|+.+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~-~d~~g~t~Lh~A~~~~~~~~~~~ll~~g-~~~~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSL-PNDEGITALHNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCC-CCTTSCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccc-cccccccccccccccccccccccccccc-cccccccccCcccccccchhhHH
Confidence            567777777777777777777777654 6777777777777777777777777665 34444555555555555555555


Q ss_pred             HHHHHHHHhcCcccccCCCCC-CCCcHHHHH--HhCCcHHHHHHHH
Q 013339          107 EAVKYLMETLNITKLANMPDN-DGNTILHLA--TAGKLTTMVIYLL  149 (445)
Q Consensus       107 ~~v~~Ll~~~~~~~~~n~~d~-~g~T~LHlA--~~~~~~~iv~~Ll  149 (445)
                      +++++|+++   ++.++..+. +|.|+++++  ...|+.+++++|+
T Consensus        81 ~~v~~Ll~~---ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~  123 (130)
T d1ycsb1          81 QVCKFLVES---GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY  123 (130)
T ss_dssp             HHHHHHHHT---TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHH
T ss_pred             HHHHHHHHc---CCCcccccCCCCCCHHHHHHHHHcChHHHHHHHH
Confidence            555555544   334443332 344444433  2334444444444

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.5e-21  Score=161.43  Aligned_cols=125  Identities=25%  Similarity=0.259  Sum_probs=112.4

Q ss_pred             ccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhC
Q 013339           60 RTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAG  139 (445)
Q Consensus        60 ~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~  139 (445)
                      .++||.||..|+.++++.|++++ .+++.+|.+|+||||+|+..|+.+++++|++.   +.++|.+|.+|+||||+|+..
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g-~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~---g~~~~~~d~~g~tpLh~A~~~   77 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEV-DDPSLPNDEGITALHNAVCAGHTEIVKFLVQF---GVNVNAADSDGWTPLHCAASC   77 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTT-SSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHH---TCCTTCCCTTCCCHHHHHHHT
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcC-CCcccccccccccccccccccccccccccccc---ccccccccccCcccccccchh
Confidence            36899999999999999999998 56889999999999999999999999999997   778999999999999999999


Q ss_pred             CcHHHHHHHHhcCCCcccccc-CCCCHHHHHhhhccccchhcHHHHHHHhcC
Q 013339          140 KLTTMVIYLLKLGVDVNAINR-KGYTALDVVESDASNSGALQIVPALEEAGA  190 (445)
Q Consensus       140 ~~~~iv~~Ll~~g~~~~~~n~-~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga  190 (445)
                      |+.+++++|+++|++++..+. .|.||++++.  +...++.+++++|+..+.
T Consensus        78 g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~--a~~~g~~eiv~~L~~~~~  127 (130)
T d1ycsb1          78 NNVQVCKFLVESGAAVFAMTYSDMQTAADKCE--EMEEGYTQCSQFLYGVQE  127 (130)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCC--SSSTTCCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCCcccccCCCCCCHHHHHH--HHHcChHHHHHHHHhHHH
Confidence            999999999999999998875 6999998843  345677899999987653

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.84  E-value=3.7e-23  Score=200.18  Aligned_cols=175  Identities=15%  Similarity=0.160  Sum_probs=112.0

Q ss_pred             HHHHHhchhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCCC-CCCCCccHHHHHHHcCCHHHHHHHHhcCCCc-
Q 013339            8 KELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSSL-PDNEGRTPLHWAAIKGRINIIDEILSLNLQS-   85 (445)
Q Consensus         8 ~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~~-~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~-   85 (445)
                      +.|++.+.+++ ..|.+|+||||+||+.||.++|++|+++|++++.. .+.+|+||||+||..|+.+++++|++.++.. 
T Consensus       110 ~~L~~~~~~in-~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~  188 (346)
T d2ajaa1         110 CLLLTSDEIVK-VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEA  188 (346)
T ss_dssp             TTC--CCSSCC---CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGH
T ss_pred             HHHHhCCCccc-ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCccc
Confidence            33566665554 66777888888888888888888888888776541 1345788888888888888888888877533 


Q ss_pred             -cccccccCcchHhHHHHcCCHHHHHHHHHhcCcc------------------------------cccCCCCCC------
Q 013339           86 -AEMRTIHGETVLHLTVKNNQYEAVKYLMETLNIT------------------------------KLANMPDND------  128 (445)
Q Consensus        86 -~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~------------------------------~~~n~~d~~------  128 (445)
                       .+..+.+|.||+|.|+.+|+.+++++|++.....                              ..+.....+      
T Consensus       189 ~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  268 (346)
T d2ajaa1         189 TAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLV  268 (346)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCS
T ss_pred             ccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHH
Confidence             2334455667777777888888888887541000                              000000111      


Q ss_pred             ----------CCcHHHHHHhCCcHHHHHHHHhcCCC-----ccccccCCCCHHHHHhhhccccchhcHHHHHHH
Q 013339          129 ----------GNTILHLATAGKLTTMVIYLLKLGVD-----VNAINRKGYTALDVVESDASNSGALQIVPALEE  187 (445)
Q Consensus       129 ----------g~T~LHlA~~~~~~~iv~~Ll~~g~~-----~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~  187 (445)
                                +.++||.|+..++.+++++|++.+..     .+..+.+|.||||+    |...|+.+++++|++
T Consensus       269 ~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~Lhl----A~~~Gn~e~v~lLL~  338 (346)
T d2ajaa1         269 TKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRL----ALRLGNQGACALLLS  338 (346)
T ss_dssp             SHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHH----HHHHTCTTHHHHHTT
T ss_pred             hcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHH----HHHcCcHHHHHHHhC
Confidence                      12566777777778888888866543     23344578888888    556677788888864

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.84  E-value=5.3e-23  Score=199.03  Aligned_cols=140  Identities=15%  Similarity=0.158  Sum_probs=114.8

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHH---HhhcCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccc--cccCc
Q 013339           20 KKDLNGHTPLHLSCSKGHLEITRE---LLKLDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMR--TIHGE   94 (445)
Q Consensus        20 ~~d~~G~TpLH~Aa~~g~~~iv~~---LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~--~~~g~   94 (445)
                      .+|..|.||||+||++||.++++.   |++.|++++. +|.+|+||||+||..|+.+++++|++.+++ .+..  +.+|.
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~-~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~-~~~~~~~~~g~  162 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKV-IQAENYQAFRLAAENGHLHVLNRLCELAPT-EIMAMIQAENY  162 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC---CHHHHHHHHHHHHTTCHHHHHHHHHSCTT-THHHHHSHHHH
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccc-cCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-ccccccccCCC
Confidence            557789999999999999887765   7889999877 899999999999999999999999999854 3333  45799


Q ss_pred             chHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCCCccccccC
Q 013339           95 TVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK  161 (445)
Q Consensus        95 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~~~~~~n~~  161 (445)
                      ||||+|+.+|+.+++++|++........+..+.+|.||+|.|+.+|+.+++++|++.|++++..+..
T Consensus       163 t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~  229 (346)
T d2ajaa1         163 HAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIH  229 (346)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHC
T ss_pred             ChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHH
Confidence            9999999999999999999974333344555667888999999999999999999999887654433

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.3e-21  Score=158.17  Aligned_cols=120  Identities=16%  Similarity=0.195  Sum_probs=108.6

Q ss_pred             CccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCC-cHHHHHH
Q 013339           59 GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGN-TILHLAT  137 (445)
Q Consensus        59 G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~-T~LHlA~  137 (445)
                      +.++||+||..|+.++++.|++++ .+++.+|..|.||||.|+ .|+.+++++|+++   +..+|.+|..|. ||||+|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~g-ad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~---ga~~~~~~~~~~~~~L~~A~   77 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAG-ANPNAPNSYGRRPIQVMM-MGSARVAELLLLH---GAEPNCADPATLTRPVHDAA   77 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTT-CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTT---TCCCCCCCTTTCCCHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcC-Cccccccccccccccccc-ccccccccccccc---cccccccccccccccccccc
Confidence            568999999999999999999988 567889999999999775 7999999999987   778899988876 6999999


Q ss_pred             hCCcHHHHHHHHhcCCCccccccCCCCHHHHHhhhccccchhcHHHHHHH
Q 013339          138 AGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEE  187 (445)
Q Consensus       138 ~~~~~~iv~~Ll~~g~~~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~  187 (445)
                      ..|+.+++++|++.|++++.+|..|+||+++    +...++.+++++|+.
T Consensus        78 ~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~----A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          78 REGFLDTLVVLHRAGARLDVRDAWGRLPVDL----AEELGHRDVARYLRA  123 (125)
T ss_dssp             HHTCHHHHHHHHHHTCCSSCCCTTCCCHHHH----HHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccccccCCCCCHHHH----HHHcCCHHHHHHHHh
Confidence            9999999999999999999999999999999    556678889998863

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6e-20  Score=171.27  Aligned_cols=154  Identities=27%  Similarity=0.289  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHhchh---------hhcCCCCCCChHHHHHHHcCCHHHHHHHhhc-CCCCCCCCCCCCccHHHHHHHcC--
Q 013339            3 VADIVKELLEARQE---------FAWKKDLNGHTPLHLSCSKGHLEITRELLKL-DPDLSSLPDNEGRTPLHWAAIKG--   70 (445)
Q Consensus         3 ~~d~v~~Ll~~~~~---------~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~-~~~~~~~~d~~G~TpLh~Aa~~G--   70 (445)
                      ..+.++.++....+         .....+..|.||||+|+..|+.++++.|++. |++++. .+..|.++++.+...+  
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~-~~~~~~~~~~~~~~~~~~  195 (285)
T d1wdya_         117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA-CDNMGRNALIHALLSSDD  195 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTC-CCTTSCCHHHHHHHCSCT
T ss_pred             chhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCccc-ccCCCCcccccccccccc
Confidence            34556666654332         2234567799999999999999999999975 777765 7889999887765543  


Q ss_pred             --CHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHH
Q 013339           71 --RINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYL  148 (445)
Q Consensus        71 --~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~L  148 (445)
                        ..++++.|++++ ..++.++..|+||||.|++.|+.+++++|++..  +.++|.+|.+|+||||+|++.++.+++++|
T Consensus       196 ~~~~~i~~~Li~~g-a~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~--g~din~~d~~G~TpL~~A~~~~~~eiv~~L  272 (285)
T d1wdya_         196 SDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE--HIEINDTDSDGKTALLLAVELKLKKIAELL  272 (285)
T ss_dssp             TTHHHHHHHHHHTT-CCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS--SCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHCC-CCCCccCCCCCCccchhhhcCcHHHHHHHHHcC--CCCCcCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence              347899999987 457788999999999999999999999999853  567999999999999999999999999999


Q ss_pred             HhcCCCcccccc
Q 013339          149 LKLGVDVNAINR  160 (445)
Q Consensus       149 l~~g~~~~~~n~  160 (445)
                      +++|+++|++|.
T Consensus       273 l~~GAd~n~~d~  284 (285)
T d1wdya_         273 CKRGASTDCGDL  284 (285)
T ss_dssp             HHHSSCSCCSSC
T ss_pred             HHCCCCCCcccC
Confidence            999999999874

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.7e-20  Score=167.16  Aligned_cols=140  Identities=17%  Similarity=0.225  Sum_probs=117.9

Q ss_pred             CHHHHHHHHHHhc----hhhhcCCCCCCChHHHHHHHcCCHHHHHHHhhcCCCCCC------------------------
Q 013339            2 HVADIVKELLEAR----QEFAWKKDLNGHTPLHLSCSKGHLEITRELLKLDPDLSS------------------------   53 (445)
Q Consensus         2 ~~~d~v~~Ll~~~----~~~~~~~d~~G~TpLH~Aa~~g~~~iv~~LL~~~~~~~~------------------------   53 (445)
                      |+.|+++.|++..    .++ +..|.+|+||||+|+..|+.++++.|+++|++.+.                        
T Consensus        14 g~~~~v~~Ll~~~~~~g~~i-n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~   92 (228)
T d1k1aa_          14 GNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRAL   92 (228)
T ss_dssp             TCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCC-CccCCCCCccceehhcccccccccccccccccccccccccccccccccccccccchhhh
Confidence            5678888888643    333 47889999999999999999999999988754432                        


Q ss_pred             ----------------------------------------------CCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccc
Q 013339           54 ----------------------------------------------LPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAE   87 (445)
Q Consensus        54 ----------------------------------------------~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~   87 (445)
                                                                    ..+..|.+|||.|+..+..++++.+++.+ ....
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~-~~~~  171 (228)
T d1k1aa_          93 LDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG-ANVN  171 (228)
T ss_dssp             HHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTT
T ss_pred             hhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhc-cccc
Confidence                                                          12456788888898888999998888877 5667


Q ss_pred             cccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHH
Q 013339           88 MRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVI  146 (445)
Q Consensus        88 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~  146 (445)
                      .+|..|.||||+|+..|+.+++++|+++   ++++|.+|.+|+||||+|+.+++.++++
T Consensus       172 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~---Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         172 AQMYSGSSALHSASGRGLLPLVRTLVRS---GADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             CBCTTSCBHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             cccccCcchHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            7889999999999999999999999998   7789999999999999999999888874

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=8.5e-20  Score=155.04  Aligned_cols=122  Identities=19%  Similarity=0.172  Sum_probs=92.6

Q ss_pred             HHHHHHHcCCHHHHHHHhhcCCCCCCC-----CCCCCccHHHHHHHc---CCHHHHHHHHhcCCCccccccccCcchHhH
Q 013339           28 PLHLSCSKGHLEITRELLKLDPDLSSL-----PDNEGRTPLHWAAIK---GRINIIDEILSLNLQSAEMRTIHGETVLHL   99 (445)
Q Consensus        28 pLH~Aa~~g~~~iv~~LL~~~~~~~~~-----~d~~G~TpLh~Aa~~---G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~   99 (445)
                      .|+.|++.+++..+..++..|.++...     .+..|+||||+|+..   |+.+++++|++++ .+++.+|.+|+||||+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g-adin~~d~~g~TpLh~   87 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-GNLDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-SCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcC-CChhhhhhhhcccccc
Confidence            355778889999888888888765431     256778888888864   5677888888877 4567777788888888


Q ss_pred             HHHcCCHHHHHHHHHhcCcccccCCCCCCCCcHHHHHHhCCcHHHHHHHHhcCC
Q 013339          100 TVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGV  153 (445)
Q Consensus       100 A~~~g~~~~v~~Ll~~~~~~~~~n~~d~~g~T~LHlA~~~~~~~iv~~Ll~~g~  153 (445)
                      |+..|+.+++++|+++   +.+++.+|.+|.||||+|+..++.+++++|++.+.
T Consensus        88 A~~~~~~~~v~~Ll~~---gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRG---KASIEIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cccccccccccccccc---CccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            8888888888888776   66777788888888888888888888887775543

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=1.2e-19  Score=154.14  Aligned_cols=111  Identities=19%  Similarity=0.236  Sum_probs=96.2

Q ss_pred             HHHHHHHHHhchhhhc-----CCCCCCChHHHHHHHc---CCHHHHHHHhhcCCCCCCCCCCCCccHHHHHHHcCCHHHH
Q 013339            4 ADIVKELLEARQEFAW-----KKDLNGHTPLHLSCSK---GHLEITRELLKLDPDLSSLPDNEGRTPLHWAAIKGRINII   75 (445)
Q Consensus         4 ~d~v~~Ll~~~~~~~~-----~~d~~G~TpLH~Aa~~---g~~~iv~~LL~~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv   75 (445)
                      .+.+..++..+.++..     ..+..|+||||+|+..   |+.++|++|+++|++++. +|.+|+||||+|+..|+.+++
T Consensus        19 l~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~-~d~~g~TpLh~A~~~~~~~~v   97 (154)
T d1dcqa1          19 IFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK-QTGKGSTALHYCCLTDNAECL   97 (154)
T ss_dssp             HHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTC-CCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhh-hhhhhcccccccccccccccc
Confidence            3456666766655442     3467899999999975   679999999999999976 899999999999999999999


Q ss_pred             HHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhc
Q 013339           76 DEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL  116 (445)
Q Consensus        76 ~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~  116 (445)
                      +.|++++ ..++.+|.+|+||||+|+++|+.+++++|++..
T Consensus        98 ~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~  137 (154)
T d1dcqa1          98 KLLLRGK-ASIEIANESGETPLDIAKRLKHEHCEELLTQAL  137 (154)
T ss_dssp             HHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccccccC-ccccccCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            9999998 567889999999999999999999999999874

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.80  E-value=6.8e-19  Score=156.54  Aligned_cols=141  Identities=27%  Similarity=0.420  Sum_probs=124.2

Q ss_pred             CHHHHHHHHHHhchhhhcCCCCCCChHHHHHHHcCCHH----------------------------------HHHHHhhc
Q 013339            2 HVADIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLE----------------------------------ITRELLKL   47 (445)
Q Consensus         2 ~~~d~v~~Ll~~~~~~~~~~d~~G~TpLH~Aa~~g~~~----------------------------------iv~~LL~~   47 (445)
                      |+.|+++.|++.++.++ ..|..+.+++|.++..++.+                                  ..+.|.+.
T Consensus        34 g~~e~v~~Ll~~g~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~  112 (209)
T d1ot8a_          34 ARADAAKRLLDAGADAN-SQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITA  112 (209)
T ss_dssp             TCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHT
T ss_pred             CCHHHHHHHHhhccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence            68899999999988876 77888999999998877654                                  34445556


Q ss_pred             CCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCHHHHHHHHHhcCcccccCCCCC
Q 013339           48 DPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDN  127 (445)
Q Consensus        48 ~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~n~~d~  127 (445)
                      +.++.. ++..|+||||.|+..|..++++.+++.+ ...+..|..|.||||+|+.+|+.+++++|+++   +++++.+|.
T Consensus       113 ~~~~~~-~~~~~~t~l~~~~~~~~~~~~~~l~~~~-~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~---gad~n~~d~  187 (209)
T d1ot8a_         113 DADINA-ADNSGKTALHWAAAVNNTEAVNILLMHH-ANRDAQDDKDETPLFLAAREGSYEASKALLDN---FANREITDH  187 (209)
T ss_dssp             TCCTTC-BCTTSCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCT
T ss_pred             cccccc-cCCCCCCcchhhcccCcceeeeeecccc-ccccccccccccccchhccccHHHHHHHHHHC---CCCCCCcCC
Confidence            666655 7899999999999999999999999997 56788899999999999999999999999998   778999999


Q ss_pred             CCCcHHHHHHhCCcHHHHHHH
Q 013339          128 DGNTILHLATAGKLTTMVIYL  148 (445)
Q Consensus       128 ~g~T~LHlA~~~~~~~iv~~L  148 (445)
                      +|+||||+|+..|+.+++++|
T Consensus       188 ~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         188 MDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHhhc
Confidence            999999999999999999976

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=4.4e-18  Score=160.78  Aligned_cols=140  Identities=24%  Similarity=0.347  Sum_probs=103.5

Q ss_pred             cCCCCCCCCCCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccccCcchHhHHHHcCCH---HHHHHHHHhcCcccccC
Q 013339           47 LDPDLSSLPDNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQY---EAVKYLMETLNITKLAN  123 (445)
Q Consensus        47 ~~~~~~~~~d~~G~TpLh~Aa~~G~~~iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~---~~v~~Ll~~~~~~~~~n  123 (445)
                      .+.+++...|.+|+||||+||..|+.++++.|++++ .+++.+|..|+||||.|+..++.   +.+..+++..  ...++
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l--~~~~~  171 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG-SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL--YPCLI  171 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHH--GGGGG
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHH--hhhhh
Confidence            455666544899999999999999999999999998 57788999999999999987752   2222233321  22356


Q ss_pred             CCCCCCCcHHHHHHhCC----cHH--------HHHHHHhcCCC-------------------------------------
Q 013339          124 MPDNDGNTILHLATAGK----LTT--------MVIYLLKLGVD-------------------------------------  154 (445)
Q Consensus       124 ~~d~~g~T~LHlA~~~~----~~~--------iv~~Ll~~g~~-------------------------------------  154 (445)
                      ..|..|+||||.++..+    ...        ++..+++.+..                                     
T Consensus       172 ~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (301)
T d1sw6a_         172 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM  251 (301)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT
T ss_pred             hcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcC
Confidence            67899999999887533    222        22333332211                                     


Q ss_pred             ccccccCCCCHHHHHhhhccccchhcHHHHHHHhcCccc
Q 013339          155 VNAINRKGYTALDVVESDASNSGALQIVPALEEAGARRC  193 (445)
Q Consensus       155 ~~~~n~~G~Tpl~~a~~~a~~~~~~~i~~~L~~~ga~~~  193 (445)
                      +|.+|.+|+||||+    |...++.+++++|++.|++..
T Consensus       252 in~~D~~G~TpLh~----A~~~g~~~iv~~Ll~~GAd~~  286 (301)
T d1sw6a_         252 LNAQDSNGDTCLNI----AARLGNISIVDALLDYGADPF  286 (301)
T ss_dssp             TTCCCTTSCCHHHH----HHHHCCHHHHHHHHHTTCCTT
T ss_pred             ccCCCCCCCCHHHH----HHHcCCHHHHHHHHHCCCCCC
Confidence            57889999999999    556678899999999999864