Citrus Sinensis ID: 013357

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440----
MESPVEAAQYQPIIESEATDASRRLENVLSDTNLSCFKRLQIASWLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYEMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAATLVLHLLLSWLVVYKFGAGLIGASLVLSLSWYIIVGAQFAYILMSDKCKHTWTGFSVQAFSGICEFLKLSGSSAVMLCLETWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKAAAFSVVVVTSISFIISVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGPYMHIFLIFFTCVMKWNNSKIHLLCYNQLMHA
ccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEccccHHHHHEEcHHHHHHccc
ccccccccccccccccccccccHHHHcHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHccccccccHHHEEcccHHHHEEEEEHHHHHHHHcc
mespveaaqyqpiiesEATDASRRLENvlsdtnlscfkRLQIASWLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYEMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAATLVLHLLLSWLVVYKFGAGLIGASLVLSLSWYIIVGAQFAYILMSDKckhtwtgfSVQAFSGICEFLKLSGSSAVMLCLETWYFQILVLIAGlldnpelalDSLSVCMAVSGLLFMVSVGFNAAASVRvsnelgagnpkaAAFSVVVVTSISFIISVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLngvqpvlsgpyMHIFLIFFTCVMKWNNSKIHLLCYNQLMHA
mespveaaqyqpiieseatdaSRRLENVLSDTNLSCFKRLQIASWLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYEMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAATLVLHLLLSWLVVYKFGAGLIGASLVLSLSWYIIVGAQFAYILMSDKCKHTWTGFSVQAFSGICEFLKLSGSSAVMLCLETWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKAAAFSVVVVTSISFIISVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGPYMHIFLIFFTCVMKWNNSKIHLLCYNQLMHA
MESPVEAAQYQPIIESEATDASRRLENVLSDTNLSCFKRLQIASWLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYEMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAATlvlhlllswlvvYKFGAGLIGASLVLSLSWYIIVGAQFAYILMSDKCKHTWTGFSVQAFSGICEFLKLSGSSAVMLCLETWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKaaafsvvvvtsisfiisvvfavivLALRHVISYAFTSGEVVANAVSElcpllaltlllNGVQPVLSGPYMHIFLIFFTCVMKWNNSKIHLLCYNQLMHA
**************************NVLSDTNLSCFKRLQIASWLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYEMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAATLVLHLLLSWLVVYKFGAGLIGASLVLSLSWYIIVGAQFAYILMSDKCKHTWTGFSVQAFSGICEFLKLSGSSAVMLCLETWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKAAAFSVVVVTSISFIISVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGPYMHIFLIFFTCVMKWNNSKIHLLCYNQL***
**************************************RLQIASWLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYEMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAATLVLHLLLSWLVVYKFGAGLIGASLVLSLSWYIIVGAQFAYILMSDKCKHTWTGFSVQAFSGICEFLKLSGSSAVMLCLETWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKAAAFSVVVVTSISFIISVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGPYMHIFLIFFTCVMKWNNSKIHLLCYNQLMHA
*********YQPIIESEATDASRRLENVLSDTNLSCFKRLQIASWLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYEMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAATLVLHLLLSWLVVYKFGAGLIGASLVLSLSWYIIVGAQFAYILMSDKCKHTWTGFSVQAFSGICEFLKLSGSSAVMLCLETWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKAAAFSVVVVTSISFIISVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGPYMHIFLIFFTCVMKWNNSKIHLLCYNQLMHA
****************************L*DTNLSCFKRLQIASWLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYEMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAATLVLHLLLSWLVVYKFGAGLIGASLVLSLSWYIIVGAQFAYILMSDKCKHTWTGFSVQAFSGICEFLKLSGSSAVMLCLETWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKAAAFSVVVVTSISFIISVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGPYMHIFLIFFTCVMKWNNSKIHLLCYNQLMHA
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
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MESPVEAAQYQPIIESEATDASRRLENVLSDTNLSCFKRLQIASWLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYEMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAATLVLHLLLSWLVVYKFGAGLIGASLVLSLSWYIIVGAQFAYILMSDKCKHTWTGFSVQAFSGICEFLKLSGSSAVMLCLETWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKAAAFSVVVVTSISFIISVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGPYMHIFLIFFTCVMKWNNSKIHLLCYNQLMHA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query444 2.2.26 [Sep-21-2011]
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.905 0.792 0.484 2e-99
Q9SIA5476 MATE efflux family protei no no 0.840 0.783 0.351 2e-62
Q9SIA3476 MATE efflux family protei no no 0.826 0.771 0.356 2e-60
Q8GXM8476 MATE efflux family protei no no 0.815 0.760 0.346 7e-59
Q9SIA4476 MATE efflux family protei no no 0.826 0.771 0.362 2e-56
Q9LUH3469 MATE efflux family protei no no 0.824 0.780 0.349 5e-56
Q9LUH2477 MATE efflux family protei no no 0.905 0.842 0.324 1e-55
Q8RWF5483 MATE efflux family protei no no 0.813 0.747 0.342 9e-54
Q9SIA1477 MATE efflux family protei no no 0.813 0.756 0.334 7e-52
Q9USK3539 Uncharacterized transport yes no 0.918 0.756 0.311 3e-43
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function desciption
 Score =  362 bits (930), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 199/411 (48%), Positives = 275/411 (66%), Gaps = 9/411 (2%)

Query: 10  YQPII-----ESEATD-ASRRLENVLSDTNLSCFKR--LQIASWLELKLLVRLAAPAVFV 61
           Y+P++     +S+ T+ +S  +E  L     +   R  L++A W E KLL  L+  ++ V
Sbjct: 7   YEPLLTRLHSDSQITERSSPEIEEFLRRRGSTVTPRWWLKLAVW-ESKLLWTLSGASIVV 65

Query: 62  YLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGR 121
            ++N ++S  T +F GHLG+L+LA AS+   GIQ  AYG+MLGM SAV+T+CGQAYGA +
Sbjct: 66  SVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQ 125

Query: 122 YEMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAY 181
           Y  +G+  QRA  + LA  V +  +Y +  P+L  +G+S A+A    +F  G+IPQI+A+
Sbjct: 126 YSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYAF 185

Query: 182 AVNFPIQKFLQAQSIVLPSAYISAATLVLHLLLSWLVVYKFGAGLIGASLVLSLSWYIIV 241
           A+  P+Q+FLQAQ+IV P AY+S    +LH LL+WLV      GL+GA+L+LS SW+++V
Sbjct: 186 ALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWWLLV 245

Query: 242 GAQFAYILMSDKCKHTWTGFSVQAFSGICEFLKLSGSSAVMLCLETWYFQILVLIAGLLD 301
                YILMS  CK TWTGFS +AF GI  + KL+ +SAVMLCLE WY Q LV+I+GLL 
Sbjct: 246 AVNGMYILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQGLVIISGLLS 305

Query: 302 NPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKAAAFSVVVVTSISFII 361
           NP ++LD++S+CM          +G +AA SVRVSNELGAGNP+ A  SVVVV   + +I
Sbjct: 306 NPTISLDAISICMYYLNWDMQFMLGLSAAISVRVSNELGAGNPRVAMLSVVVVNITTVLI 365

Query: 362 SVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSG 412
           S V  VIVL  R  +S AFTS   V  AVS+L PLLA+++ LNG+QP+LSG
Sbjct: 366 SSVLCVIVLVFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLNGIQPILSG 416
May be involved in vacuolar transport of flavonoids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q9USK3|YJ2D_SCHPO Uncharacterized transporter C4B3.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4B3.13 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query444
359483373509 PREDICTED: protein TRANSPARENT TESTA 12 0.907 0.791 0.776 1e-173
224115716508 predicted protein [Populus trichocarpa] 0.927 0.811 0.735 1e-172
255554915503 multidrug resistance pump, putative [Ric 0.925 0.817 0.742 1e-170
359483444508 PREDICTED: protein TRANSPARENT TESTA 12- 0.905 0.791 0.759 1e-167
224131582503 predicted protein [Populus trichocarpa] 0.905 0.799 0.740 1e-166
126363774500 multi antimicrobial extrusion family pro 0.916 0.814 0.718 1e-163
126363776500 multi antimicrobial extrusion family pro 0.916 0.814 0.718 1e-163
224115726501 predicted protein [Populus trichocarpa] 0.927 0.822 0.686 1e-162
356544808517 PREDICTED: LOW QUALITY PROTEIN: protein 0.918 0.789 0.709 1e-161
357453431507 Transparent testa 12 protein [Medicago t 0.885 0.775 0.725 1e-161
>gi|359483373|ref|XP_002273739.2| PREDICTED: protein TRANSPARENT TESTA 12 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 319/411 (77%), Positives = 360/411 (87%), Gaps = 8/411 (1%)

Query: 10  YQPIIES--------EATDASRRLENVLSDTNLSCFKRLQIASWLELKLLVRLAAPAVFV 61
           + PI+ES           ++S  LE VLSD  L   +RL+ A+W+ELKLL RLAAPAV V
Sbjct: 9   HTPILESMQRSSSTGSTFESSSELEKVLSDLQLPWLRRLRTATWIELKLLFRLAAPAVLV 68

Query: 62  YLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGR 121
           YLINN MSLSTRVF GHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGA R
Sbjct: 69  YLINNAMSLSTRVFAGHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGANR 128

Query: 122 YEMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAY 181
            EMLG+Y+QRAT VL ATG P+ ++Y+F KP+L+LLGES+AVASAAA+FVYGLIPQIFAY
Sbjct: 129 SEMLGIYLQRATVVLTATGFPLTVIYVFAKPILLLLGESSAVASAAAVFVYGLIPQIFAY 188

Query: 182 AVNFPIQKFLQAQSIVLPSAYISAATLVLHLLLSWLVVYKFGAGLIGASLVLSLSWYIIV 241
           AVNFPIQKFLQAQSIV PSA ISAATL +HLLLSW+ VYK G GLIGASLVLSLSW+IIV
Sbjct: 189 AVNFPIQKFLQAQSIVAPSAIISAATLSVHLLLSWVAVYKLGMGLIGASLVLSLSWWIIV 248

Query: 242 GAQFAYILMSDKCKHTWTGFSVQAFSGICEFLKLSGSSAVMLCLETWYFQILVLIAGLLD 301
           GAQF YIL+SD+CK+TWTGFS+QAFSG+ EFLKLS +SAVMLCLETWYFQ+LVLIAGLL 
Sbjct: 249 GAQFVYILISDRCKYTWTGFSLQAFSGLWEFLKLSAASAVMLCLETWYFQMLVLIAGLLK 308

Query: 302 NPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKAAAFSVVVVTSISFII 361
           NPELALDSLS+CMA+SGLLFMVSVGFNAAASVRVSNELGAGNPK+AAFSVV+V  +SFII
Sbjct: 309 NPELALDSLSICMAISGLLFMVSVGFNAAASVRVSNELGAGNPKSAAFSVVLVNLVSFII 368

Query: 362 SVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSG 412
           +V+ A++VL+LRHVISYAFT G  VA  VS+LCP LA+TL+LNGVQPVLSG
Sbjct: 369 AVIEAIVVLSLRHVISYAFTGGATVAKEVSDLCPFLAVTLILNGVQPVLSG 419

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224115716|ref|XP_002317104.1| predicted protein [Populus trichocarpa] gi|222860169|gb|EEE97716.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255554915|ref|XP_002518495.1| multidrug resistance pump, putative [Ricinus communis] gi|223542340|gb|EEF43882.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359483444|ref|XP_002273901.2| PREDICTED: protein TRANSPARENT TESTA 12-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224131582|ref|XP_002321125.1| predicted protein [Populus trichocarpa] gi|222861898|gb|EEE99440.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|126363774|dbj|BAF47751.1| multi antimicrobial extrusion family protein [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|126363776|dbj|BAF47752.1| multi antimicrobial extrusion family protein [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|224115726|ref|XP_002317107.1| predicted protein [Populus trichocarpa] gi|222860172|gb|EEE97719.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356544808|ref|XP_003540839.1| PREDICTED: LOW QUALITY PROTEIN: protein TRANSPARENT TESTA 12-like [Glycine max] Back     alignment and taxonomy information
>gi|357453431|ref|XP_003596992.1| Transparent testa 12 protein [Medicago truncatula] gi|355486040|gb|AES67243.1| Transparent testa 12 protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query444
TAIR|locus:2089955506 AT3G21690 "AT3G21690" [Arabido 0.927 0.814 0.611 2.2e-128
TAIR|locus:2027322503 AT1G11670 "AT1G11670" [Arabido 0.905 0.799 0.597 2.7e-123
TAIR|locus:2036848501 AT1G61890 "AT1G61890" [Arabido 0.907 0.804 0.575 1.8e-119
TAIR|locus:2077725507 TT12 "AT3G59030" [Arabidopsis 0.903 0.790 0.427 8.7e-79
TAIR|locus:2015368484 AT1G47530 "AT1G47530" [Arabido 0.822 0.754 0.448 1.1e-76
TAIR|locus:2010401522 RSH2 "AT1G12950" [Arabidopsis 0.824 0.701 0.427 5.9e-73
TAIR|locus:2144421498 AT5G38030 "AT5G38030" [Arabido 0.824 0.734 0.419 5.3e-72
TAIR|locus:2088822500 AT3G26590 "AT3G26590" [Arabido 0.824 0.732 0.419 1.4e-71
TAIR|locus:2028115515 AT1G23300 "AT1G23300" [Arabido 0.822 0.708 0.404 3.1e-67
TAIR|locus:2126036542 AT4G00350 "AT4G00350" [Arabido 0.842 0.690 0.397 3.1e-67
TAIR|locus:2089955 AT3G21690 "AT3G21690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1260 (448.6 bits), Expect = 2.2e-128, P = 2.2e-128
 Identities = 255/417 (61%), Positives = 307/417 (73%)

Query:     1 MESPVEAAQYQPIIESEATDA-----SRRLENVLSDTNLSCFKRLQIASWLELKLLVRLA 55
             M+S      +QP++  + + +     +  LE VLSD     F RL+ A+ +E KLL  LA
Sbjct:     1 MDSSPNDGVHQPLLHPQPSPSPPESTNGELETVLSDVETPLFLRLRKATIIESKLLFNLA 60

Query:    56 APAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQ 115
             APAV VY+IN LMS+ST++F GHLGNLELAAASLGN+GIQ+FAYGLMLGMGSAVETLCGQ
Sbjct:    61 APAVIVYMINYLMSMSTQIFSGHLGNLELAAASLGNTGIQVFAYGLMLGMGSAVETLCGQ 120

Query:   116 AYGAGRYEMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLI 175
             AYG  +YEMLGVY+QR+T +L  TG+ + ++Y+F +P+L+ LGES A+ASAA+LFVYGLI
Sbjct:   121 AYGGRKYEMLGVYLQRSTVLLTLTGLLLTLIYVFSEPILLFLGESPAIASAASLFVYGLI 180

Query:   176 PQIFAYAVNFPIQKFLQAQSIVLPSAYISAATXXXXXXXXXXXXYKFGAGLIGASLVLSL 235
             PQIFAYA NFPIQKFLQ+QSIV PSAYIS AT            YK G GL+GASLVLSL
Sbjct:   181 PQIFAYAANFPIQKFLQSQSIVAPSAYISTATLFVHLLLSWLAVYKLGMGLLGASLVLSL 240

Query:   236 SWYIIVGAQFAYILMSDKCKHTWTGFSVQAFSGICEFLKLSGSSAVMLCLETWYFQILVL 295
             SW+IIV AQF YI+ S++C+ TW GFSVQAFSG+  F KLS +SAVMLCLETWYFQILVL
Sbjct:   241 SWWIIVVAQFVYIVTSERCRETWRGFSVQAFSGLWSFFKLSAASAVMLCLETWYFQILVL 300

Query:   296 IAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKXXXXXXXXXX 355
             +AGLL+NPELALDSLS+CM +SG +FM+SVGFNAA SVRVSNELGAGNPK          
Sbjct:   301 LAGLLENPELALDSLSICMTISGWVFMISVGFNAAISVRVSNELGAGNPKSAAFSVIIVN 360

Query:   356 XXXXXXXXXXXXXXLALRHVISYAFTSGEVVANAVSEXXXXXXXXXXXNGVQPVLSG 412
                           LA R V+SYAFT G+ V++AVS+           NG+QPVLSG
Sbjct:   361 IYSLITCVILAIVILACRDVLSYAFTEGKEVSDAVSDLCPLLAVTLVLNGIQPVLSG 417
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0009610 "response to symbiotic fungus" evidence=RCA
GO:0015824 "proline transport" evidence=RCA
TAIR|locus:2027322 AT1G11670 "AT1G11670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036848 AT1G61890 "AT1G61890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077725 TT12 "AT3G59030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015368 AT1G47530 "AT1G47530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010401 RSH2 "AT1G12950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144421 AT5G38030 "AT5G38030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088822 AT3G26590 "AT3G26590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028115 AT1G23300 "AT1G23300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126036 AT4G00350 "AT4G00350" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00010745001
SubName- Full=Chromosome chr10 scaffold_282, whole genome shotgun sequence; (509 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query444
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-134
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 6e-73
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 4e-41
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 1e-38
pfam01554161 pfam01554, MatE, MatE 2e-28
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 2e-25
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 4e-25
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 9e-23
pfam01554161 pfam01554, MatE, MatE 5e-20
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 1e-18
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 1e-18
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 7e-17
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 5e-15
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 2e-12
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 1e-11
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 1e-11
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 2e-11
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 2e-10
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 1e-08
cd13141443 cd13141, MATE_like_13, Uncharacterized subfamily o 1e-08
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 1e-07
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 5e-07
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 1e-05
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 2e-05
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 3e-05
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 3e-04
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 4e-04
cd13139 448 cd13139, MATE_like_14, Uncharacterized subfamily o 5e-04
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 0.001
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  393 bits (1013), Expect = e-134
 Identities = 176/366 (48%), Positives = 253/366 (69%), Gaps = 1/366 (0%)

Query: 47  ELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMG 106
           E K L+RLAAP V   L+   +S+ + VF GHLG LELAAASL +S   +  + ++LG+ 
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 107 SAVETLCGQAYGAGRYEMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASA 166
           SA++TLCGQA+GA  Y+++GVY+QRA  +LL   VP+ ++++  +P+L+LLG+   +A  
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 167 AALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAATLVLHLLLSWLVVYKFGAGL 226
           A  ++  LIP +FAYA+  P++++LQAQ IVLP  YIS   L+L++LL++L+V+  G G 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 227 IGASLVLSLSWYIIVGAQFAYILMSDKCKHTWTGFSVQAFSGICEFLKLSGSSAVMLCLE 286
           IGA+L  S+S+++IV     YI  S   K TW GFS +AF G   FLKL+  SA+MLCLE
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 287 TWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKA 346
            W F+ILVL+AGLL    +AL + S+C+  + LL+M+ +G + AASVRV NELGAGNPK 
Sbjct: 241 WWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKR 299

Query: 347 AAFSVVVVTSISFIISVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGV 406
           A  + +V   +S +I VV A+++L LR V +Y FTS E V   V++L P+LAL  + +G+
Sbjct: 300 AKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGL 359

Query: 407 QPVLSG 412
           Q VLSG
Sbjct: 360 QAVLSG 365

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 444
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
TIGR01695 502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
PRK15099416 O-antigen translocase; Provisional 99.98
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.96
COG0728 518 MviN Uncharacterized membrane protein, putative vi 99.95
PRK10459 492 colanic acid exporter; Provisional 99.93
COG2244480 RfbX Membrane protein involved in the export of O- 99.91
PRK00187464 multidrug efflux protein NorA; Provisional 99.9
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 99.89
PRK10189478 MATE family multidrug exporter; Provisional 99.89
PRK01766456 multidrug efflux protein; Reviewed 99.89
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 99.87
TIGR01695502 mviN integral membrane protein MviN. This model re 99.84
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 99.79
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.77
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.76
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.76
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.74
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.74
PRK10459492 colanic acid exporter; Provisional 99.73
PRK15099416 O-antigen translocase; Provisional 99.69
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.65
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.6
COG2244480 RfbX Membrane protein involved in the export of O- 99.6
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.51
KOG1347473 consensus Uncharacterized membrane protein, predic 99.0
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 99.0
PF04506 549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.81
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.6
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.43
KOG2864 530 consensus Nuclear division RFT1 protein [Cell cycl 98.43
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 97.89
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 97.42
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.26
COG4267467 Predicted membrane protein [Function unknown] 97.07
PF13440 251 Polysacc_synt_3: Polysaccharide biosynthesis prote 96.4
COG4267467 Predicted membrane protein [Function unknown] 86.81
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-50  Score=393.44  Aligned_cols=383  Identities=25%  Similarity=0.338  Sum_probs=358.5

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcc
Q 013357           44 SWLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGRYE  123 (444)
Q Consensus        44 ~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~a~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~  123 (444)
                      .++..|+++++++|.+++++...+++.+|+.++||+|++++|+.+++.++.. +...+..|++.+..+.++|++|+||++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~-~~~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFF-LIIAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHcCCchH
Confidence            5678999999999999999999999999999999999999999999999999 899999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHHH
Q 013357          124 MLGVYMQRATFVLLATGVPVM-MVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAY  202 (444)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  202 (444)
                      ++++..++++.++++++++.. +.+.+.++++.+++.++|+.+.+.+|+++..++.|+..+..+..+.+|+.||+|.++.
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            999999999999999997776 6788999999999998899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh-cC-CccchhHHHHHHHHHHHHHHHHHHHHhccc-ccccccccchhhhhhHHHHHHHHhHH
Q 013357          203 ISAATLVLHLLLSWLVVYK-FG-AGLIGASLVLSLSWYIIVGAQFAYILMSDK-CKHTWTGFSVQAFSGICEFLKLSGSS  279 (444)
Q Consensus       203 ~~~~~~i~~i~l~~ili~~-~~-~g~~g~~~a~~i~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~p~  279 (444)
                      .++++.++|+++|++|+++ ++ +|+.|+++||.+++.+..++..++++|+++ ......+..+.+++.+|++++.|+|.
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~  250 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI  250 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence            9999999999999999998 67 999999999999999999999999988754 22222223233347799999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 013357          280 AVMLCLETWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKAAAFSVVVVTSISF  359 (444)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~g~~~~~va~~~~~~~i~~~~~~~~~~l~~a~~~~i~~~~g~~~~~~~~~~~~~~~~~~~  359 (444)
                      ++.+..+...+...+.+++++|++  ++|+|+++.++.++.++++.|++++..|+++|++|++|++++++..+.++++++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~G~~--~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~  328 (455)
T COG0534         251 FLESLSESLGFLLLTLFVARLGTV--ALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL  328 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999954  456999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhhccCcHHHHHHHHHHhHHHHHHHHHhhHHHHhhhhhhchhhHHHHHHhhcc
Q 013357          360 IISVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGPYMHIFLIFFTCVMKWN  429 (444)
Q Consensus       360 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~  429 (444)
                      ++++..+++++++++++.++|++|+|+.+.+.+++++.++..++++.+.+..+.+||.||++.+.+....
T Consensus       329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~  398 (455)
T COG0534         329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLL  398 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999998887555544

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query444
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 7e-08
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 129/304 (42%), Gaps = 15/304 (4%)
Query: 51  LVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNS---GIQLFAYGLMLGMGS 107
           L++LA P +   +    M     +  G +  +++AA S+  S      LF  GL++    
Sbjct: 14  LIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLM---- 69
Query: 108 AVETLCGQAYGAGRYEMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAA 167
           A+  +  Q  GAGR   +   + +   + L   VP++ V    + ++  +    A+A+  
Sbjct: 70  ALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKT 129
Query: 168 ALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAATXXXXXXXXXXXXY-KFGA-- 224
             +++ +I  + AY +   ++ F    S+  P+  I                Y KFGA  
Sbjct: 130 VGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPE 189
Query: 225 -GLIGASLVLSLSWYIIVGAQFAYILMSDKCKH--TWTGFSVQAFSGICEFLKLSGSSAV 281
            G +G  +  ++ ++I++     YI+ S +  H   +  F       +    +L    A 
Sbjct: 190 LGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAA 249
Query: 282 MLCLETWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGA 341
            L  E   F ++ L+   L +  +A  +  V +  S L+FM  +   AA S+RV ++LG 
Sbjct: 250 ALFFEVTLFAVVALLVAPLGSTVVA--AHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGE 307
Query: 342 GNPK 345
            + K
Sbjct: 308 QDTK 311

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query444
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 3e-65
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  215 bits (550), Expect = 3e-65
 Identities = 87/372 (23%), Positives = 169/372 (45%), Gaps = 9/372 (2%)

Query: 47  ELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMG 106
           E   L++LA P +   +    M     +  G +  +++AA S+  S I L +    +G+ 
Sbjct: 10  EASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAAS-IWLPSILFGVGLL 68

Query: 107 SAVETLCGQAYGAGRYEMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASA 166
            A+  +  Q  GAGR   +   + +   + L   VP++ V    + ++  +    A+A+ 
Sbjct: 69  MALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATK 128

Query: 167 AALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSAYISAATLVLHLLLSWLVVY-KFGA- 224
              +++ +I  + AY +   ++ F    S+  P+  I    L+L++ L+W+ VY KFGA 
Sbjct: 129 TVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAP 188

Query: 225 --GLIGASLVLSLSWYIIVGAQFAYILMSDKCKH--TWTGFSVQAFSGICEFLKLSGSSA 280
             G +G  +  ++ ++I++     YI+ S +  H   +  F       +    +L    A
Sbjct: 189 ELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVA 248

Query: 281 VMLCLETWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELG 340
             L  E   F ++ L+   L +  +A  +  V +  S L+FM  +   AA S+RV ++LG
Sbjct: 249 AALFFEVTLFAVVALLVAPLGSTVVA--AHQVALNFSSLVFMFPMSIGAAVSIRVGHKLG 306

Query: 341 AGNPKAAAFSVVVVTSISFIISVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALT 400
             + K AA +  V        + + A++ +  R  I+  +T  +VV     +L    A+ 
Sbjct: 307 EQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIY 366

Query: 401 LLLNGVQPVLSG 412
             ++ VQ V +G
Sbjct: 367 QCMDAVQVVAAG 378

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query444
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.86
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=1.8e-43  Score=349.64  Aligned_cols=392  Identities=21%  Similarity=0.315  Sum_probs=357.1

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCC
Q 013357           42 IASWLELKLLVRLAAPAVFVYLINNLMSLSTRVFCGHLGNLELAAASLGNSGIQLFAYGLMLGMGSAVETLCGQAYGAGR  121 (444)
Q Consensus        42 ~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~a~~~~a~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~  121 (444)
                      +..++..|++++.++|.+++++...+.+.+|+.+++++|++++|+++++.++.. +...+..|++++..+.+++++|++|
T Consensus         5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~-~~~~~~~g~~~~~~~~is~~~g~~~   83 (460)
T 3mkt_A            5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWL-PSILFGVGLLMALVPVVAQLNGAGR   83 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHH-HHHHHHHHHHHHHGGGCTTTTSSSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            345678999999999999999999999999999999999999999999999988 7777889999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchHHH
Q 013357          122 YEMLGVYMQRATFVLLATGVPVMMVYIFCKPMLILLGESTAVASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVLPSA  201 (444)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~  201 (444)
                      +++.++.+++++.+..+.+++..+++.+.++++.+++.+++..+.+..|+++..++.++..+.....+.+++.||++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~  163 (460)
T 3mkt_A           84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM  163 (460)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            99999999999999999999887667888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh-c---CCccchhHHHHHHHHHHHHHHHHHHHHhcccccc-c-ccccchhhhhhHHHHHHH
Q 013357          202 YISAATLVLHLLLSWLVVYK-F---GAGLIGASLVLSLSWYIIVGAQFAYILMSDKCKH-T-WTGFSVQAFSGICEFLKL  275 (444)
Q Consensus       202 ~~~~~~~i~~i~l~~ili~~-~---~~g~~g~~~a~~i~~~i~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~i~~~  275 (444)
                      ..++++.++|+++++++++. +   ++|+.|+++++.+++.+..++..++.+|+++.++ + ++++.+.+++.+|++++.
T Consensus       164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  243 (460)
T 3mkt_A          164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL  243 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence            99999999999999999975 4   6899999999999999999998888877643321 1 122323335679999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 013357          276 SGSSAVMLCLETWYFQILVLIAGLLDNPELALDSLSVCMAVSGLLFMVSVGFNAAASVRVSNELGAGNPKAAAFSVVVVT  355 (444)
Q Consensus       276 ~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~va~~~~~~~i~~~~~~~~~~l~~a~~~~i~~~~g~~~~~~~~~~~~~~~  355 (444)
                      ++|.+++.+.+.+.+.+++.+++++|+++  +|+|++++++.++...+..+++++..|.+++++|++|++++++..++++
T Consensus       244 ~~p~~~~~~~~~~~~~~~~~~~~~~g~~~--va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~  321 (460)
T 3mkt_A          244 GFPVAAALFFEVTLFAVVALLVAPLGSTV--VAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGL  321 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCTTSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHcChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999999999999999999999997544  5699999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhccCcHHHHHHHHHHhHHHHHHHHHhhHHHHhhhhhhchhhHHHHHHhhcccc-hhh
Q 013357          356 SISFIISVVFAVIVLALRHVISYAFTSGEVVANAVSELCPLLALTLLLNGVQPVLSGPYMHIFLIFFTCVMKWNNS-KIH  434 (444)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~~~  434 (444)
                      ++.+.++++.++++.++++++.++|.+|+++.+.+.+++++++++.++++++.+..++++|.||++...+...... +++
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  401 (460)
T 3mkt_A          322 MTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLG  401 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998999999999999999999999999999999999999877766655 554


Q ss_pred             HH
Q 013357          435 LL  436 (444)
Q Consensus       435 ~~  436 (444)
                      +.
T Consensus       402 i~  403 (460)
T 3mkt_A          402 LP  403 (460)
T ss_dssp             HH
T ss_pred             HH
Confidence            43
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00