Citrus Sinensis ID: 013373

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440----
Protein Sequence
MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDNYFGFSVKDLLNQ
Secondary Structure (PSIPRED)
cHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHcccccccccccccccEEEEcccccHHHHHHHHHHccccccEEEcccccccccccccEEEEEEHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHccccccEEEcccccHHHHHHHHHHccccEEEEEccccccEEEEEcHHHHHHHHHHccccccccccccccccccccccccccccEEEcccccHHHHHHHHHHccccccEEEEccccEEEEEEEHHHHHHHHcccccccccccccHHHHHHHccccccccccccccEEEcccccHHHHHHHHHHccccEEEEEEcccccEEEEEcHHHHHHHHHHccccccccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHcccccccccHHHHHHHHHHHccccccHHHHHHHHHHccccccccccccccEEEEccccHHHHHHHHHHHccccccccEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccccccccccccccccccHccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcccHcHcHHHHHHccHHHHHHHHcccccEcccccHHHHHHHHHHHHcccccccEEccccccEEEEEcHHHHHHHHHHHHcccccHHHHHccHHHccccccccccEEEEccccHHHHHHHHHHHccccccEEEcccccEEEEEEEHHHHHHHHHcccHcccccEEcHHHHHHHHHHHHHHccccccccEccccHHHHHHHHHHHHHcccEEEEEEcccccEEEEEEHHHHHHHHHcccccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFAripvlsfpnvpggrvieimadttIPDAVKILSEcnilsapvkipdapsssdwkerylGIVDYSAIILWVLETAELAAAAFSVGTataagvgtgtVGALGALalgmtgpaaVAGLTVAAAGAAVAGGlaaekgagkdaptaadRLHEDFYKVIlqeepfkstTVRSIIKsyrwapflpvatddSMLSVLLLLSKyrlrnvpiiepgtpdiknYITQSAVVqglegckgrdwfdiiasqpisdlglpfmssdeviTIQSNELILEAFKRMkdnniggipvvegqqkkivgnvsIRDIRHLLLKPELFSNFRQLTVRDFMnavvpttpdsgkvnppitcklestlGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDViscfifeppnhldnyfgfsvKDLLNQ
Flexible Loop (DISEMBL)
maqaeeakevsklsscDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNIlsapvkipdapsssdWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVilqeepfksttvrSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIiepgtpdiknYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIggipvvegqqkkivGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVvpttpdsgkvnpPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDNYFGFSVKDLLNQ
Low Complexity Region (SEG)
MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAElaaaafsvgtataagvgtgtvgalgalalgmtgpaavagltvaaagaavagglaaekgagkdaPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDsmlsvllllsKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYvvageeaevvgvITLRDVISCFIFEPPNHLDNYFGFSVKDLLNQ
Disordered region (IsUnstruct)
****************DAYFEAIQ****LPHSLQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDA**SSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAE*********AADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDNYFGFSVKD****
Disordered Region (DISOPRED)
**********************************ETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELA**********AAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKV***********VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVP*****GKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDNYFGFSVKDLL**
Disordered Region (DISEMBL)
**************SCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLA**********TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDNYFGFSVKDLLNQ
Disordered Region (DISPRO)
************LSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGT*******TGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDNYFGFSVKDLLNQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDNYFGFSVKDLLNQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	444	2.2.26 [Sep-21-2011]
Q9CAR3	447	SNF1-related protein kina	yes	no	0.997	0.991	0.713	1e-164
Q8LBB2	424	SNF1-related protein kina	no	no	0.844	0.884	0.343	1e-66
Q9MYP4	514	5'-AMP-activated protein	yes	no	0.484	0.418	0.225	1e-07
Q9UGI9	489	5'-AMP-activated protein	yes	no	0.484	0.439	0.221	2e-07
Q8BGM7	489	5'-AMP-activated protein	yes	no	0.484	0.439	0.217	4e-07
Q2LL38	497	5'-AMP-activated protein	yes	no	0.490	0.438	0.223	1e-06
Q9XI37	352	SNF1-related protein kina	no	no	0.315	0.397	0.271	1e-06
Q8GXI9	357	SNF1-related protein kina	no	no	0.313	0.389	0.240	3e-05
Q10343	334	5'-AMP-activated protein	yes	no	0.430	0.571	0.225	0.0001
P15889	300	Uncharacterized 33.4 kDa	yes	no	0.416	0.616	0.239	0.0002

>sp|Q9CAR3|KINGL_ARATH SNF1-related protein kinase regulatory subunit gamma-1-like OS=Arabidopsis thaliana GN=CBSCBS2 PE=2 SV=1

 Score =  579 bits (1493), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 317/444 (71%), Positives = 375/444 (84%), Gaps = 1/444 (0%)

Query: 2   AQAEEAKEV-SKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
           ++A E KE+ S +SSC+AYFE +QSRK LP SLQETL +AFA IPV SFP VPGGRVIEI
Sbjct: 4   SEAVEDKEIKSAVSSCEAYFEKVQSRKNLPKSLQETLNSAFAGIPVSSFPQVPGGRVIEI 63

Query: 61  MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
            A+T + +AVKILS+  ILSAPV   D  SS DW+ERYLGI+DYS+IILWVLE+AELAA 
Sbjct: 64  QAETPVSEAVKILSDSKILSAPVINTDHESSLDWRERYLGIIDYSSIILWVLESAELAAI 123

Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
           A S  +ATAAGVG G VGALG  ALGMTGP A AGL  AA GAAVAGG+AAE+G GKDAP
Sbjct: 124 ALSATSATAAGVGAGAVGALGVAALGMTGPVAAAGLAAAAVGAAVAGGVAAERGIGKDAP 183

Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
           TAAD+L +DFY+VILQEEPFKSTTVR+I+KS+RWAPFLPV+T+ SMLSV+LLLSKYRLRN
Sbjct: 184 TAADKLGKDFYEVILQEEPFKSTTVRTILKSFRWAPFLPVSTESSMLSVMLLLSKYRLRN 243

Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 300
           VP+I+ G PDIKNY+TQSAVV GLEGCKGRDWFD I++ PISDLGLPFMS +EVI+I+S 
Sbjct: 244 VPVIKTGEPDIKNYVTQSAVVHGLEGCKGRDWFDHISALPISDLGLPFMSPNEVISIESE 303

Query: 301 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN 360
           ELILEAFKRM+DNNIGG+PVVEG  KKIVGN+S+RDIR+LLL+PE+FSNFRQLTV+ F  
Sbjct: 304 ELILEAFKRMRDNNIGGLPVVEGLNKKIVGNISMRDIRYLLLQPEVFSNFRQLTVKSFAT 363

Query: 361 AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420
            +     + G   P ITC+ +STLGSVI+SLAS+SVHR+YV AG+E E+ GVITLRDVIS
Sbjct: 364 KIATAGEEYGLAIPAITCRPDSTLGSVINSLASRSVHRVYVAAGDENELYGVITLRDVIS 423

Query: 421 CFIFEPPNHLDNYFGFSVKDLLNQ 444
           CF+ EPPN+ +N  GFSVK++LN+
Sbjct: 424 CFVSEPPNYFENCLGFSVKEMLNR 447

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBB2|KING1_ARATH SNF1-related protein kinase regulatory subunit gamma-1 OS=Arabidopsis thaliana GN=KING1 PE=1 SV=2

 Score =  254 bits (648), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 144/419 (34%), Positives = 228/419 (54%), Gaps = 44/419 (10%)

Query: 21  EAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILS 80
           E +   +K   S  E L A F  IPV +FP     + IEI +DT++ +AV+ LS+  +LS
Sbjct: 33  EDLWDEQKPQLSPNEKLNACFESIPVSAFPLSSDSQDIEIRSDTSLAEAVQTLSKFKVLS 92

Query: 81  APVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGAL 140
           APV   DAP  + W +RY+GIV++  I++W+L   E                        
Sbjct: 93  APVVDVDAPEDASWIDRYIGIVEFPGIVVWLLHQLE------------------------ 128

Query: 141 GALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF 200
                    P +     VAA+              G  A T+ +     F++V+   E +
Sbjct: 129 ---------PPSPRSPAVAASNGFSHDFTTDVLDNGDSAVTSGN-----FFEVLTSSELY 174

Query: 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAV 260
           K+T VR I  ++RWAPFL +  ++S L++LLLLSKY+++++P+++ G   I+N ITQS V
Sbjct: 175 KNTKVRDISGTFRWAPFLALQKENSFLTMLLLLSKYKMKSIPVVDLGVAKIENIITQSGV 234

Query: 261 VQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPV 320
           +  L  C G  WF+    + +S++GLP MS D +I I  +E +L+AFK M+   IGGIPV
Sbjct: 235 IHMLAECAGLLWFEDWGIKTLSEVGLPIMSKDHIIKIYEDEPVLQAFKLMRRKRIGGIPV 294

Query: 321 VEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPP----- 375
           +E   +K VGN+S+RD++ LL  PE++ ++R +T ++F+ +V       G  + P     
Sbjct: 295 IERNSEKPVGNISLRDVQFLLTAPEIYHDYRSITTKNFLVSVREHLEKCGDTSAPIMSGV 354

Query: 376 ITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDNYF 434
           I C    TL  +I  L ++ +HRIYVV  +   + G+ITLRD+I+  + EP  +  ++F
Sbjct: 355 IACTKNHTLKELILMLDAEKIHRIYVV-DDFGNLEGLITLRDIIARLVHEPSGYFGDFF 412

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants. The SnRK complex may also be involved in the regulation of fatty acid synthesis by phosphorylation of acetyl-CoA carboxylase and in assimilation of nitrogen by phosphorylating nitrate reductase.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MYP4|AAKG3_PIG 5'-AMP-activated protein kinase subunit gamma-3 OS=Sus scrofa GN=PRKAG3 PE=1 SV=2

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 104/239 (43%), Gaps = 24/239 (10%)

Query: 194 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKN 253
           I + E  K  T R I     + P + ++ +DS+   +  L K R+  +P+++P +  + +
Sbjct: 286 IYEIEEHKIETWREIYLQGCFKPLVSISPNDSLFEAVYALIKNRIHRLPVLDPVSGAVLH 345

Query: 254 YITQSAVVQGLEGCKGRDWFDIIASQP------ISDLGLPFMSSDEVITIQSNELILEAF 307
            +T   +++ L        F  +  +P      I DLG+      ++  +     IL A 
Sbjct: 346 ILTHKRLLKFLH------IFGTLLPRPSFLYRTIQDLGIGTFR--DLAVVLETAPILTAL 397

Query: 308 KRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP 367
               D  +  +PVV  +  ++VG  S  D+ HL  +      +  L     MN       
Sbjct: 398 DIFVDRRVSALPVV-NETGQVVGLYSRFDVIHLAAQ----QTYNHLD----MNVGEALRQ 448

Query: 368 DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP 426
            +  +   ++C+   TLG VI  +  + VHR+ V+  E   ++GV++L D++   +  P
Sbjct: 449 RTLCLEGVLSCQPHETLGEVIDRIVREQVHRL-VLVDETQHLLGVVSLSDILQALVLSP 506

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Sus scrofa (taxid: 9823)

>sp|Q9UGI9|AAKG3_HUMAN 5'-AMP-activated protein kinase subunit gamma-3 OS=Homo sapiens GN=PRKAG3 PE=1 SV=3

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 109/239 (45%), Gaps = 24/239 (10%)

Query: 194 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKN 253
           I + E  K  T R I     + P + ++ +DS+   +  L K R+  +P+++P + ++ +
Sbjct: 261 IYEIEQHKIETWREIYLQGCFKPLVSISPNDSLFEAVYTLIKNRIHRLPVLDPVSGNVLH 320

Query: 254 YITQSAVVQGLEGCKGRDWFDIIASQP------ISDLGLPFMSSDEVITIQSNELILEAF 307
            +T   +++ L        F  +  +P      I DLG+   +  ++  +     IL A 
Sbjct: 321 ILTHKRLLKFLH------IFGSLLPRPSFLYRTIQDLGI--GTFRDLAVVLETAPILTAL 372

Query: 308 KRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP 367
               D  +  +PVV  +  ++VG  S  D+ HL  +     N   ++V + +        
Sbjct: 373 DIFVDRRVSALPVV-NECGQVVGLYSRFDVIHLAAQQTY--NHLDMSVGEALRQ------ 423

Query: 368 DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP 426
            +  +   ++C+   +LG VI  +A + VHR+ V+  E   ++GV++L D++   +  P
Sbjct: 424 RTLCLEGVLSCQPHESLGEVIDRIAREQVHRL-VLVDETQHLLGVVSLSDILQALVLSP 481

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Homo sapiens (taxid: 9606)

>sp|Q8BGM7|AAKG3_MOUSE 5'-AMP-activated protein kinase subunit gamma-3 OS=Mus musculus GN=Prkag3 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 107/239 (44%), Gaps = 24/239 (10%)

Query: 194 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKN 253
           I + E  K  T R I     + P + ++ +DS+   +  L K R+  +P+++P +  +  
Sbjct: 261 IYEIEEHKIETWREIYLQGCFKPLVSISPNDSLFEAVYALIKNRIHRLPVLDPVSGTVLY 320

Query: 254 YITQSAVVQGLEGCKGRDWFDIIASQP------ISDLGLPFMSSDEVITIQSNELILEAF 307
            +T   +++ L        F  +  +P      I DLG+   +  ++  +     +L A 
Sbjct: 321 ILTHKRLLKFLH------IFGALLPRPSFLCRTIQDLGI--GTFRDLAVVLETAPVLTAL 372

Query: 308 KRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP 367
               D  +  +PVV  +  ++VG  S  D+ HL  +     N   ++V + +        
Sbjct: 373 DIFVDRRVSALPVV-NESGQVVGLYSRFDVIHLAAQQTY--NHLDMSVGEALRQ------ 423

Query: 368 DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP 426
            +  +   ++C+   +LG VI  +A + VHR+ V+  E   ++GV++L D++   +  P
Sbjct: 424 RTLCLEGVLSCQPHESLGEVIDRIAREQVHRL-VLVDETQHLLGVVSLSDILQALVLSP 481

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Mus musculus (taxid: 10090)

>sp|Q2LL38|AAKG3_BOVIN 5'-AMP-activated protein kinase subunit gamma-3 OS=Bos taurus GN=PRKAG3 PE=2 SV=2

 Score = 55.1 bits (131), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 194 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKN 253
           I + E  K  T R I     + P + ++  DS+   +  L K R+  +P+++P +  + +
Sbjct: 268 IYEIEEHKIETWREIYLQGCFKPLVSISPSDSLFEAVYTLIKNRIHRLPVLDPVSGAVLH 327

Query: 254 YITQSAVVQGLEGCKG----RDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKR 309
            +T   +++ L   +     R  F     + I DLG+   +  ++  +     IL A   
Sbjct: 328 ILTHKRLLKFLHIFQRTLLPRPSF---LYRTIQDLGIG--TFRDLAVVLETAPILTALDI 382

Query: 310 MKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDS 369
             D  +  +PV+  +  ++VG  S  D+ HL  +     N   ++V + +         +
Sbjct: 383 FVDRRVSALPVI-NEAGQVVGLYSRFDVIHLAAQQTY--NHLDISVGEALRR------RT 433

Query: 370 GKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP 426
             +   ++C+   TLG VI  +A + VHR+ V+  E   ++GV++L D++   +  P
Sbjct: 434 LCLEGVLSCQPHETLGEVIDRIAREQVHRL-VLVDETQHLLGVVSLSDILQALVLSP 489

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Bos taurus (taxid: 9913)

>sp|Q9XI37|PV42A_ARATH SNF1-related protein kinase regulatory subunit gamma-like PV42a OS=Arabidopsis thaliana GN=PV42A PE=1 SV=1

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 26/166 (15%)

Query: 271 DWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVE-------- 322
           D    + S+ ISDLG     +D V  I     +  A   MK   +  +P+V         
Sbjct: 194 DDLKTVLSRSISDLG---AVNDSVYAITERTTVSNAINVMKGALLNAVPIVHAPDIAQED 250

Query: 323 ------GQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPI 376
                 G+ +K++G  S  D++   L PEL   +  LT  +F      T   SGK    +
Sbjct: 251 HLQLVNGRHRKVIGTFSATDLKGCRL-PEL-QTWLPLTALEF------TEKTSGKEREVV 302

Query: 377 TCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF 422
           +C +EST+   I  + ++ VHR++V+  ++  + GV++L D+I   
Sbjct: 303 SCGVESTMEEAIEKVVTRGVHRVWVM-DQQGLLQGVVSLTDIIRSL 347

Plays redundant role with PV42b in regulating male gametogenesis and pollen tube guidance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXI9|PV42B_ARATH SNF1-related protein kinase regulatory subunit gamma-like PV42b OS=Arabidopsis thaliana GN=PV42B PE=2 SV=1

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 76/162 (46%), Gaps = 23/162 (14%)

Query: 276 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVE------------- 322
           I S  ++DL       + V+ + S   + +A + M    +  +P+VE             
Sbjct: 188 ILSHTVTDLSAIH---NTVLALTSQARVKDAIQCMSIAMLNAVPIVEASGEGEDHKQLVD 244

Query: 323 GQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPP----ITC 378
           G+ +++VG  S  D++   L      ++  L   +F+  +  T   +   + P    +TC
Sbjct: 245 GKNRRVVGTFSASDLKGCHLAT--LRSWLPLNALEFVEKIPRTLLFTAATSTPGRELVTC 302

Query: 379 KLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420
            + STL  VIH + +K VHR++VV  +   + G+++L D+I+
Sbjct: 303 HVTSTLAQVIHMVTTKRVHRVWVV-DQNGGLQGLVSLTDIIA 343

Plays redundant role with PV42a in regulating male gametogenesis and pollen tube guidance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q10343|AAKG_SCHPO 5'-AMP-activated protein kinase subunit gamma OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cbs2 PE=1 SV=2

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 107/222 (48%), Gaps = 31/222 (13%)

Query: 225 SMLSVLLLLSKYRLRNVPII----EPGTPDIKNYITQSAVVQGLE-GCKGRDWFDIIASQ 279
           S++   L +SK R R +P+I    E G+  I + +TQ  +++ +   CK      +    
Sbjct: 127 SLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETAMLRV---- 182

Query: 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVV--EGQQKKIVGNVSIRDI 337
           P++ + +   S+    ++++   + +  K + + NI  +P+V  EG    +  +V   D+
Sbjct: 183 PLNQMTIGTWSNLATASMETK--VYDVIKMLAEKNISAVPIVNSEGTLLNVYESV---DV 237

Query: 338 RHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVH 397
            HL+   + +SN   L+V +   A++    +   V+   TC+    L  +  ++    VH
Sbjct: 238 MHLIQDGD-YSNL-DLSVGE---ALLKRPANFDGVH---TCRATDRLDGIFDAIKHSRVH 289

Query: 398 RIYVVAGEEAEVVGVITLRDVISCFIFEP------PNHLDNY 433
           R++VV  E  ++ G+++L D+++  I++       P   DN+
Sbjct: 290 RLFVV-DENLKLEGILSLADILNYIIYDKTTTPGVPEQTDNF 330

Adenine nucleotides-binding subunit gamma of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (SNF1) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P15889|YR33_THEPE Uncharacterized 33.4 kDa protein in ribosomal RNA operon OS=Thermofilum pendens PE=4 SV=1

 Score = 47.8 bits (112), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 100/213 (46%), Gaps = 28/213 (13%)

Query: 213 RWAPFLPVATDDSMLSVLLLLSKYRLRNVPII-EPGTPDIKNYITQSAVVQGLEGCKGRD 271
           R+ P   V +   +L VL+ + + R+R+VP++ E G   +K  ++   +V  L G + RD
Sbjct: 10  RFPPLAVVPSSSRVLDVLVAMGRNRVRHVPLVDERGV--LKGMVSARDLVDFLGGRRFRD 67

Query: 272 ----WFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKK 327
                F+    + +   G+ F+  D       ++L  E  + M +  IG + VV+ +  +
Sbjct: 68  VVEARFNGDVYKALEQTGVEFLKYDPPYVYTRSDL-REVIELMVERGIGALAVVD-EDLR 125

Query: 328 IVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSV 387
           +VG VS R +  LL   E     +++      + VV  +P               +L   
Sbjct: 126 VVGIVSERHVISLLANVETHVKVKEI----MTSEVVYLSP-------------MDSLFEG 168

Query: 388 IHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420
           +  ++ + + R+ +V+GEE    G++T++DV+S
Sbjct: 169 MRVMSERRIRRLPLVSGEELR--GIVTIKDVLS 199

Thermofilum pendens (taxid: 2269)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	444
357486631	443	SNF1-related protein kinase regulatory s	0.997	1.0	0.725	1e-180
225424926	444	PREDICTED: SNF1-related protein kinase r	1.0	1.0	0.779	1e-175
255558196	443	AMP-activated protein kinase, gamma regu	0.997	1.0	0.754	1e-170
224140801	443	predicted protein [Populus trichocarpa]	0.997	1.0	0.731	1e-170
356500477	443	PREDICTED: SNF1-related protein kinase r	0.997	1.0	0.731	1e-166
449434819	442	PREDICTED: SNF1-related protein kinase r	0.995	1.0	0.763	1e-166
356498190	443	PREDICTED: SNF1-related protein kinase r	0.997	1.0	0.745	1e-165
145327199	476	Cystathionine beta-synthase (CBS) protei	0.997	0.930	0.713	1e-163
42563087	447	Cystathionine beta-synthase (CBS) protei	0.997	0.991	0.713	1e-163
297841713	447	CBS domain-containing protein [Arabidops	0.997	0.991	0.709	1e-160

>gi|357486631|ref|XP_003613603.1| SNF1-related protein kinase regulatory subunit gamma [Medicago truncatula] gi|355514938|gb|AES96561.1| SNF1-related protein kinase regulatory subunit gamma [Medicago truncatula]

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 322/444 (72%), Positives = 382/444 (86%), Gaps = 1/444 (0%)

Query: 1   MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
           MA  +E +  ++LS CD YFE IQSRKKLP +LQETLT +FA+IPV SFP VPGG+V+EI
Sbjct: 1   MAHEQEVRTSTQLSKCDRYFETIQSRKKLPQTLQETLTDSFAKIPVSSFPGVPGGKVVEI 60

Query: 61  MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
           +ADT + +AVKILSE NIL+APVK PDA   SDW++RYLGI+DYSAIILWV+E+AELAA 
Sbjct: 61  LADTPVGEAVKILSESNILAAPVKDPDAGIGSDWRDRYLGIIDYSAIILWVMESAELAAV 120

Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
           A S GTATAAGVG GTVGALGA+ALG TGPAA+AGLT AA GAAV GG+AA+K   KDAP
Sbjct: 121 ALSAGTATAAGVGAGTVGALGAIALGATGPAAIAGLTAAAVGAAVVGGVAADKTMAKDAP 180

Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
            AA+ L EDFYKVILQEEPFKSTTVRSI+KSYRWAPF+PVA + +ML+VLLLLSKYRLRN
Sbjct: 181 QAANNLGEDFYKVILQEEPFKSTTVRSILKSYRWAPFVPVAKNSAMLTVLLLLSKYRLRN 240

Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 300
           VP+IEPG  DI N+ITQSAV+QGLEGC+GRDWFD IA++P++DLGLPFMS+D+VI+IQSN
Sbjct: 241 VPVIEPGKADIVNFITQSAVIQGLEGCRGRDWFDCIAARPMADLGLPFMSADKVISIQSN 300

Query: 301 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN 360
           ELILEAFK M+DN IGG+PVVEG  K IVGN+SIRDIR+LLLKPE+FSNFR LTV DFM 
Sbjct: 301 ELILEAFKIMRDNQIGGLPVVEGPAKTIVGNLSIRDIRYLLLKPEIFSNFRNLTVMDFMK 360

Query: 361 AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420
            +V  + +SGKV  PITCK ++TL SVIH+LAS+S+HRIY V G++ +VVGVITLRDVIS
Sbjct: 361 KIVSASYESGKVTRPITCKPDATLQSVIHTLASQSIHRIYTVNGQD-QVVGVITLRDVIS 419

Query: 421 CFIFEPPNHLDNYFGFSVKDLLNQ 444
           CFI EP  H D+Y+GF+VK++LNQ
Sbjct: 420 CFITEPDYHFDDYYGFAVKEMLNQ 443

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424926|ref|XP_002277342.1| PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Vitis vinifera] gi|296086419|emb|CBI32008.3| unnamed protein product [Vitis vinifera]

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 346/444 (77%), Positives = 388/444 (87%)

Query: 1   MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
           MAQA+EAKE  +L SCDAYFE IQSRKKLP SLQE+LTAAFARIPV SFP V GG+V+EI
Sbjct: 1   MAQAQEAKESPQLLSCDAYFENIQSRKKLPRSLQESLTAAFARIPVSSFPEVLGGKVVEI 60

Query: 61  MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
             D  I +AVK LS CNILSAPV+ PDA +S DW+ERYLGI+DYSAIILWVLE+A+LAA 
Sbjct: 61  RGDAIIAEAVKTLSLCNILSAPVRNPDAGTSLDWRERYLGIIDYSAIILWVLESAQLAAV 120

Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
           AFS  TATAAGV  G VGALGALALG TGPAAVAG+TVAA GAAVAGG+AA++G GKDAP
Sbjct: 121 AFSASTATAAGVSAGAVGALGALALGATGPAAVAGITVAAVGAAVAGGMAADRGMGKDAP 180

Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
           TAAD L E+FYKV+ QEEPFKSTTV+SI+KSYR APFLPVATD SMLSVLLLLSKYR+RN
Sbjct: 181 TAADHLGEEFYKVLFQEEPFKSTTVQSILKSYRSAPFLPVATDSSMLSVLLLLSKYRMRN 240

Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 300
           VP+IEPG P +KNYITQSA+VQGLE CKGRDWFD IA+ PISDLGLPFMS +EV+TIQSN
Sbjct: 241 VPVIEPGQPFVKNYITQSAIVQGLERCKGRDWFDCIAAHPISDLGLPFMSHNEVVTIQSN 300

Query: 301 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN 360
           ELILEAFK+MKDN IGG+PVVEG +KKIVGNVSIRDIR LLL P+LFSNFRQLTV DFM 
Sbjct: 301 ELILEAFKKMKDNKIGGLPVVEGPRKKIVGNVSIRDIRFLLLNPDLFSNFRQLTVMDFMT 360

Query: 361 AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420
            +  TT ++G V  P+TC L S LGSVIH+LA+KSVHRIYVVAG+E EVVGVITLRDVIS
Sbjct: 361 TIASTTEEAGNVIQPMTCHLNSALGSVIHTLAAKSVHRIYVVAGQEDEVVGVITLRDVIS 420

Query: 421 CFIFEPPNHLDNYFGFSVKDLLNQ 444
           CFIFEPPNH DNYFGF+VK++LN+
Sbjct: 421 CFIFEPPNHFDNYFGFTVKEMLNK 444

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558196|ref|XP_002520125.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis] gi|223540617|gb|EEF42180.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]

 Score =  603 bits (1554), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 335/444 (75%), Positives = 384/444 (86%), Gaps = 1/444 (0%)

Query: 1   MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
           MAQ +E +  S L SCDAYFE IQSRKKLP SLQ+TLT AFARIPV SFP VP G+VIEI
Sbjct: 1   MAQTKEKRASSNLESCDAYFETIQSRKKLPLSLQDTLTTAFARIPVSSFPLVPRGKVIEI 60

Query: 61  MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
           +ADT++ DAVKILSECNI +APVK  +A +SSDW+E+YLG++DYSAIILWVLE+AELAA 
Sbjct: 61  LADTSVADAVKILSECNITAAPVKNSEAGTSSDWREKYLGMIDYSAIILWVLESAELAAV 120

Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
           A S   ATAAGVG G VGALGA+ALG+TGPAA+AGLT AA GAAV GG+AA+KG GKDAP
Sbjct: 121 ALSASRATAAGVGAGAVGALGAVALGITGPAAIAGLTAAAVGAAVVGGVAADKGMGKDAP 180

Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
           TAA  L +DFYKVILQEEPFKSTTVRS++KSYRWAPFL VATD SMLSVLLLLSKYRLRN
Sbjct: 181 TAASNLGKDFYKVILQEEPFKSTTVRSVLKSYRWAPFLAVATDSSMLSVLLLLSKYRLRN 240

Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 300
           VP++EPG  D++N+ITQSA+VQGLEGCKGRDWFD IA++PISD GLPFMS++EVI+I+SN
Sbjct: 241 VPVVEPGKTDVQNFITQSAIVQGLEGCKGRDWFDCIAARPISDFGLPFMSANEVISIRSN 300

Query: 301 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN 360
           ELILEAFKRM+DN+IGG+PVVEG  K+IV N+SIRDIRHLLLKPELF+NFRQLTV DFM 
Sbjct: 301 ELILEAFKRMRDNHIGGLPVVEGANKRIVWNLSIRDIRHLLLKPELFNNFRQLTVTDFM- 359

Query: 361 AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420
                T + G+  PPITCK ++TLGSVIHSLA  SVHRIYVVAG E EVVGVITLRDVIS
Sbjct: 360 VTFSKTHEIGRGIPPITCKPDATLGSVIHSLAWNSVHRIYVVAGNENEVVGVITLRDVIS 419

Query: 421 CFIFEPPNHLDNYFGFSVKDLLNQ 444
           CFI+EP +H DNYFGFS K++LN 
Sbjct: 420 CFIYEPADHSDNYFGFSTKEMLNN 443

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140801|ref|XP_002323767.1| predicted protein [Populus trichocarpa] gi|222866769|gb|EEF03900.1| predicted protein [Populus trichocarpa]

 Score =  603 bits (1554), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 325/444 (73%), Positives = 387/444 (87%), Gaps = 1/444 (0%)

Query: 1   MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
           MA  ++  + S+LS CD+YFE IQSRKKLP SLQETLTAAFA IP  SFP VPGG+VIEI
Sbjct: 1   MAGKQQVTKSSELSICDSYFENIQSRKKLPFSLQETLTAAFAEIPASSFPPVPGGKVIEI 60

Query: 61  MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
           +AD+++ DAV+ILSECNI++APVK  DA  S DW++RYLGI+DYSAI+LWVLE+AELAA 
Sbjct: 61  LADSSVADAVRILSECNIMAAPVKKVDAGDSLDWRDRYLGIIDYSAIVLWVLESAELAAV 120

Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
           A +  +A AAG+GTG VGALGA+ALG+TGP AVAGLT AA GAAV GG+AAEKGAGKDA 
Sbjct: 121 ALAATSAAAAGIGTGAVGALGAVALGLTGPVAVAGLTFAAVGAAVVGGVAAEKGAGKDAS 180

Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
           TAAD L +DFYKV+LQEEPFKSTTV SII SYRW+PFLPV T+ SMLS+LLLLSKYRLRN
Sbjct: 181 TAADNLGQDFYKVLLQEEPFKSTTVGSIITSYRWSPFLPVTTNSSMLSILLLLSKYRLRN 240

Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 300
           VP+IEPG PDI+N+ITQSA+VQGLEGCKGRDWFD IA+QPIS++GLPF+S++EV+++QS 
Sbjct: 241 VPVIEPGKPDIQNFITQSAIVQGLEGCKGRDWFDCIAAQPISNVGLPFVSANEVVSVQSG 300

Query: 301 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN 360
           ELILEAFK+MKDN IGG+PVVEG  KKI+GN+SIRDIRHLLLKPELFSNFRQ TV DFMN
Sbjct: 301 ELILEAFKKMKDNKIGGLPVVEGPNKKIIGNLSIRDIRHLLLKPELFSNFRQHTVMDFMN 360

Query: 361 AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420
           A+V TT  +G V PPITCK ++TLGS+IH+L+S+S HRI+VV   E EVVGVITLRDVIS
Sbjct: 361 AIVSTTKGTGSVIPPITCKPDATLGSLIHALSSRSGHRIHVVNQSE-EVVGVITLRDVIS 419

Query: 421 CFIFEPPNHLDNYFGFSVKDLLNQ 444
           CF++EPPNH D+YF FS K++L++
Sbjct: 420 CFVYEPPNHFDSYFSFSTKEMLDE 443

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500477|ref|XP_003519058.1| PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Glycine max]

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 325/444 (73%), Positives = 383/444 (86%), Gaps = 1/444 (0%)

Query: 1   MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
           MAQ +E +  + L  CD YFE IQSRKKLP SLQETLT AFA+IPV SFP VP G+VIEI
Sbjct: 1   MAQEQEYRTSTTLPKCDTYFETIQSRKKLPLSLQETLTDAFAKIPVSSFPAVPSGKVIEI 60

Query: 61  MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
           +ADT I +AVKILSE NILSAPVK P+A +SSDW+ RYLGI+DYSAIILWVLE AELA  
Sbjct: 61  LADTPIGEAVKILSESNILSAPVKDPEAANSSDWRRRYLGIIDYSAIILWVLEGAELAHK 120

Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
           A  VGTATAAGVG G  GA+GALALG+TGPAA+AGLT AAAGAA+AGG+AA++   KDAP
Sbjct: 121 ALLVGTATAAGVGAGAAGAMGALALGVTGPAAIAGLTAAAAGAALAGGIAADRVVAKDAP 180

Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
            AAD L EDFYK+IL+EEPFKSTTVRSIIKSYRWAPF+PVA + +ML+VLLLLSKYRLRN
Sbjct: 181 QAADNLGEDFYKIILEEEPFKSTTVRSIIKSYRWAPFVPVARNSAMLTVLLLLSKYRLRN 240

Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 300
           VP+IE G PDI N+ITQSAVVQGLEGCKGRDWFD IA + I+DLGLPFMS+DEVI+IQSN
Sbjct: 241 VPVIETGKPDIVNFITQSAVVQGLEGCKGRDWFDCIAEKRIADLGLPFMSTDEVISIQSN 300

Query: 301 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN 360
           ELILEAFK+M+DN IGG+P+VEG +K+IVGN+SIRDIRHLLL+PELF+NFR+LTV +FMN
Sbjct: 301 ELILEAFKQMRDNKIGGLPIVEGPKKRIVGNLSIRDIRHLLLRPELFTNFRKLTVMNFMN 360

Query: 361 AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420
            +V ++  +GKV   ITCK +STL  VIH+LAS+S+HRIYVV G++ EVVGVITLRDVIS
Sbjct: 361 KIVSSSLQTGKVTQSITCKPDSTLQGVIHTLASQSIHRIYVVDGQD-EVVGVITLRDVIS 419

Query: 421 CFIFEPPNHLDNYFGFSVKDLLNQ 444
           CF+ EPP + D+Y+GF+VK++LNQ
Sbjct: 420 CFVTEPPYNFDDYYGFAVKEMLNQ 443

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434819|ref|XP_004135193.1| PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Cucumis sativus] gi|449478452|ref|XP_004155322.1| PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Cucumis sativus]

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 339/444 (76%), Positives = 386/444 (86%), Gaps = 2/444 (0%)

Query: 1   MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
           M Q +E K  S LS+C++YFE IQS KKLP  LQETL  AF+RIPV SFP VPGGRVIEI
Sbjct: 1   MEQGKEVK-YSALSNCESYFERIQSTKKLPKYLQETLNDAFSRIPVSSFPGVPGGRVIEI 59

Query: 61  MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
            ADTTI +AVKILSECNILSAPV  P+A ++ +W+ERY+GIVDYSAIILWVLE+AELAAA
Sbjct: 60  PADTTIANAVKILSECNILSAPVVNPNAKANMNWRERYIGIVDYSAIILWVLESAELAAA 119

Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
           A S G+ATA GVG G VGALGALALG TGP AVAG+  AA GAAVAGG+A +KG GKDAP
Sbjct: 120 ALSAGSATAVGVGAGAVGALGALALGATGPIAVAGIAAAAVGAAVAGGVAVDKGIGKDAP 179

Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
           TAAD L EDFYKV+LQEEPFKSTTV  I+KSYRWAPFLPV  D+SML VLLLLSKYRLRN
Sbjct: 180 TAADNLGEDFYKVLLQEEPFKSTTVEMILKSYRWAPFLPVTLDNSMLCVLLLLSKYRLRN 239

Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 300
           VP+IE G P+IKNYITQSAVVQGLE CKGRDWFD IA++PISDLGLPF+S  EVI+IQSN
Sbjct: 240 VPVIESGKPEIKNYITQSAVVQGLERCKGRDWFDCIAARPISDLGLPFVSCKEVISIQSN 299

Query: 301 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN 360
           ELILEAFK+M++N+IGG+PVVEG +K+IVGN+SIRDIR+LLLKPELFSNFR+LTV DF+ 
Sbjct: 300 ELILEAFKQMRENHIGGLPVVEGPKKRIVGNISIRDIRYLLLKPELFSNFRKLTVMDFIK 359

Query: 361 AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420
            VV  T D GK+ PPITC+L+STLG VIHSLASKSVHRIYVVAG+E EVVGVITLRDVIS
Sbjct: 360 TVVTLTQDVGKLAPPITCRLDSTLGFVIHSLASKSVHRIYVVAGDE-EVVGVITLRDVIS 418

Query: 421 CFIFEPPNHLDNYFGFSVKDLLNQ 444
           CFIFEPPN++ N+FGFS +++LNQ
Sbjct: 419 CFIFEPPNYIINHFGFSAEEMLNQ 442

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498190|ref|XP_003517936.1| PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Glycine max]

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 331/444 (74%), Positives = 384/444 (86%), Gaps = 1/444 (0%)

Query: 1   MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
           MAQ +E +  + L  CDAYFE IQSRKKLP SLQETLT AFA+IPV SFP VP G+VIEI
Sbjct: 1   MAQEQEFRTSTPLPKCDAYFETIQSRKKLPLSLQETLTDAFAKIPVSSFPAVPSGKVIEI 60

Query: 61  MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
           +ADT + +AVKILSE NIL+APVK PDA +SSDW+ RYLGI+DYSAIILWVLE AELA A
Sbjct: 61  LADTPVGEAVKILSESNILAAPVKDPDASNSSDWRSRYLGIIDYSAIILWVLEGAELAQA 120

Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
           A   GTATAAGVG G  GALGALALG+TGPAA+AGLT AAAGAA+AGG+AA+K   KDAP
Sbjct: 121 ALLAGTATAAGVGAGAAGALGALALGLTGPAAIAGLTTAAAGAALAGGVAADKVMAKDAP 180

Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
            AAD L EDFYK+IL+EEPFKSTTVRSIIKSYRWAPF+PVA + +ML+VLLLLSKYRLRN
Sbjct: 181 QAADNLGEDFYKIILEEEPFKSTTVRSIIKSYRWAPFVPVARNSAMLTVLLLLSKYRLRN 240

Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 300
           VP+IEPG PDI N+ITQSAVVQGLEGCKGRDWFD IA + ISDLGLPFMS+DEVI+IQSN
Sbjct: 241 VPVIEPGRPDIVNFITQSAVVQGLEGCKGRDWFDCIAEKCISDLGLPFMSTDEVISIQSN 300

Query: 301 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN 360
           ELILEAFK+MKDN IGG+PV+EG +K+IVGN+SIRDIRHLLL+PELF+NFR+LTV DFM 
Sbjct: 301 ELILEAFKQMKDNRIGGLPVIEGPKKRIVGNLSIRDIRHLLLRPELFTNFRKLTVMDFMK 360

Query: 361 AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420
            +V ++  +GKV  PITCK +STL  VIH+LAS+S+HRIYVV G + EVVGVITLRDVIS
Sbjct: 361 KIVSSSLQTGKVTQPITCKPDSTLQGVIHTLASQSIHRIYVVDGHD-EVVGVITLRDVIS 419

Query: 421 CFIFEPPNHLDNYFGFSVKDLLNQ 444
           CF+ EPP + D+Y+GF+VK++LNQ
Sbjct: 420 CFVTEPPYNFDDYYGFAVKEMLNQ 443

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145327199|ref|NP_001077801.1| Cystathionine beta-synthase (CBS) protein [Arabidopsis thaliana] gi|332196856|gb|AEE34977.1| Cystathionine beta-synthase (CBS) protein [Arabidopsis thaliana]

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 317/444 (71%), Positives = 375/444 (84%), Gaps = 1/444 (0%)

Query: 2   AQAEEAKEV-SKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
           ++A E KE+ S +SSC+AYFE +QSRK LP SLQETL +AFA IPV SFP VPGGRVIEI
Sbjct: 33  SEAVEDKEIKSAVSSCEAYFEKVQSRKNLPKSLQETLNSAFAGIPVSSFPQVPGGRVIEI 92

Query: 61  MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
            A+T + +AVKILS+  ILSAPV   D  SS DW+ERYLGI+DYS+IILWVLE+AELAA 
Sbjct: 93  QAETPVSEAVKILSDSKILSAPVINTDHESSLDWRERYLGIIDYSSIILWVLESAELAAI 152

Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
           A S  +ATAAGVG G VGALG  ALGMTGP A AGL  AA GAAVAGG+AAE+G GKDAP
Sbjct: 153 ALSATSATAAGVGAGAVGALGVAALGMTGPVAAAGLAAAAVGAAVAGGVAAERGIGKDAP 212

Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
           TAAD+L +DFY+VILQEEPFKSTTVR+I+KS+RWAPFLPV+T+ SMLSV+LLLSKYRLRN
Sbjct: 213 TAADKLGKDFYEVILQEEPFKSTTVRTILKSFRWAPFLPVSTESSMLSVMLLLSKYRLRN 272

Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 300
           VP+I+ G PDIKNY+TQSAVV GLEGCKGRDWFD I++ PISDLGLPFMS +EVI+I+S 
Sbjct: 273 VPVIKTGEPDIKNYVTQSAVVHGLEGCKGRDWFDHISALPISDLGLPFMSPNEVISIESE 332

Query: 301 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN 360
           ELILEAFKRM+DNNIGG+PVVEG  KKIVGN+S+RDIR+LLL+PE+FSNFRQLTV+ F  
Sbjct: 333 ELILEAFKRMRDNNIGGLPVVEGLNKKIVGNISMRDIRYLLLQPEVFSNFRQLTVKSFAT 392

Query: 361 AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420
            +     + G   P ITC+ +STLGSVI+SLAS+SVHR+YV AG+E E+ GVITLRDVIS
Sbjct: 393 KIATAGEEYGLAIPAITCRPDSTLGSVINSLASRSVHRVYVAAGDENELYGVITLRDVIS 452

Query: 421 CFIFEPPNHLDNYFGFSVKDLLNQ 444
           CF+ EPPN+ +N  GFSVK++LN+
Sbjct: 453 CFVSEPPNYFENCLGFSVKEMLNR 476

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42563087|ref|NP_564975.2| Cystathionine beta-synthase (CBS) protein [Arabidopsis thaliana] gi|75262290|sp|Q9CAR3.1|KINGL_ARATH RecName: Full=SNF1-related protein kinase regulatory subunit gamma-1-like; AltName: Full=AKIN subunit gamma-1-like; AltName: Full=CBS domain-containing protein CBSCBS2 gi|12325233|gb|AAG52563.1|AC010675_11 hypothetical protein; 77242-78931 [Arabidopsis thaliana] gi|190684768|gb|ACE82595.1| At1g69800 [Arabidopsis thaliana] gi|222424344|dbj|BAH20128.1| AT1G69800 [Arabidopsis thaliana] gi|332196855|gb|AEE34976.1| Cystathionine beta-synthase (CBS) protein [Arabidopsis thaliana]

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 317/444 (71%), Positives = 375/444 (84%), Gaps = 1/444 (0%)

Query: 2   AQAEEAKEV-SKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
           ++A E KE+ S +SSC+AYFE +QSRK LP SLQETL +AFA IPV SFP VPGGRVIEI
Sbjct: 4   SEAVEDKEIKSAVSSCEAYFEKVQSRKNLPKSLQETLNSAFAGIPVSSFPQVPGGRVIEI 63

Query: 61  MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
            A+T + +AVKILS+  ILSAPV   D  SS DW+ERYLGI+DYS+IILWVLE+AELAA 
Sbjct: 64  QAETPVSEAVKILSDSKILSAPVINTDHESSLDWRERYLGIIDYSSIILWVLESAELAAI 123

Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
           A S  +ATAAGVG G VGALG  ALGMTGP A AGL  AA GAAVAGG+AAE+G GKDAP
Sbjct: 124 ALSATSATAAGVGAGAVGALGVAALGMTGPVAAAGLAAAAVGAAVAGGVAAERGIGKDAP 183

Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
           TAAD+L +DFY+VILQEEPFKSTTVR+I+KS+RWAPFLPV+T+ SMLSV+LLLSKYRLRN
Sbjct: 184 TAADKLGKDFYEVILQEEPFKSTTVRTILKSFRWAPFLPVSTESSMLSVMLLLSKYRLRN 243

Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 300
           VP+I+ G PDIKNY+TQSAVV GLEGCKGRDWFD I++ PISDLGLPFMS +EVI+I+S 
Sbjct: 244 VPVIKTGEPDIKNYVTQSAVVHGLEGCKGRDWFDHISALPISDLGLPFMSPNEVISIESE 303

Query: 301 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN 360
           ELILEAFKRM+DNNIGG+PVVEG  KKIVGN+S+RDIR+LLL+PE+FSNFRQLTV+ F  
Sbjct: 304 ELILEAFKRMRDNNIGGLPVVEGLNKKIVGNISMRDIRYLLLQPEVFSNFRQLTVKSFAT 363

Query: 361 AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420
            +     + G   P ITC+ +STLGSVI+SLAS+SVHR+YV AG+E E+ GVITLRDVIS
Sbjct: 364 KIATAGEEYGLAIPAITCRPDSTLGSVINSLASRSVHRVYVAAGDENELYGVITLRDVIS 423

Query: 421 CFIFEPPNHLDNYFGFSVKDLLNQ 444
           CF+ EPPN+ +N  GFSVK++LN+
Sbjct: 424 CFVSEPPNYFENCLGFSVKEMLNR 447

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841713|ref|XP_002888738.1| CBS domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297334579|gb|EFH64997.1| CBS domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 315/444 (70%), Positives = 374/444 (84%), Gaps = 1/444 (0%)

Query: 2   AQAEEAKEV-SKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
           ++A E KE+ S +SSC+AYFE +QSRK LP SLQETL +AFA IPV SFP VPGGRVIEI
Sbjct: 4   SEAVEDKEIKSAVSSCEAYFEKVQSRKNLPKSLQETLNSAFAGIPVSSFPQVPGGRVIEI 63

Query: 61  MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
            A+T + +AVKILS+  ILSAPV   D  SS DW+ERYLGI+DYS+IILWVLE+AELAA 
Sbjct: 64  PAETPVSEAVKILSDSKILSAPVINTDHESSLDWRERYLGIIDYSSIILWVLESAELAAI 123

Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
           A S  +ATAAGVG G VGALG  ALG+TGP AVAGL  AA GAAVAGG+AA++G GKDAP
Sbjct: 124 ALSATSATAAGVGAGAVGALGVAALGVTGPVAVAGLAAAAVGAAVAGGVAADRGIGKDAP 183

Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
           TAAD L +DFY+VILQEEPFKSTTVR+I+KS+RWAPFLPV+T+ SMLSV+LLLSKYRLRN
Sbjct: 184 TAADNLGKDFYQVILQEEPFKSTTVRTILKSFRWAPFLPVSTESSMLSVMLLLSKYRLRN 243

Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 300
           VP+I+ G PDIKNYITQSAVV GLEGCKGRDWFD I++  ISDLGLPFMS +EVI+I+S 
Sbjct: 244 VPVIKSGEPDIKNYITQSAVVHGLEGCKGRDWFDHISALSISDLGLPFMSPNEVISIESE 303

Query: 301 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN 360
           ELILEAFKRM+DNNIGG+PV+EG  KKIVGN+S+RDIR+LLL+PE+FSNFRQLTV+ F  
Sbjct: 304 ELILEAFKRMRDNNIGGLPVIEGPNKKIVGNISMRDIRYLLLQPEVFSNFRQLTVKSFAT 363

Query: 361 AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420
            +     + G   P ITC+ +STLGSVI+SLAS+SVHR+YV AG+E E+ GVITLRDVIS
Sbjct: 364 KIATAGEEYGLAIPAITCRPDSTLGSVINSLASRSVHRVYVAAGDENELYGVITLRDVIS 423

Query: 421 CFIFEPPNHLDNYFGFSVKDLLNQ 444
           CF+ EPPN+ +N  GFSVK++LN+
Sbjct: 424 CFVSEPPNYFENCLGFSVKEMLNR 447

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	444
TAIR|locus:2114475	424	KING1 "AT3G48530" [Arabidopsis	0.551	0.577	0.350	2e-59
DICTYBASE|DDB_G0288201	313	DDB_G0288201 [Dictyostelium di	0.436	0.619	0.229	1.1e-10
DICTYBASE|DDB_G0275177	304	sigI "CBS (cystathionine-beta-	0.346	0.506	0.266	3.5e-08
DICTYBASE|DDB_G0278953	359	DDB_G0278953 "CBS (cystathioni	0.457	0.565	0.223	1.9e-07
UNIPROTKB|Q48IU0	146	PSPPH_2494 "CBS domain protein	0.130	0.397	0.409	0.00088

TAIR|locus:2114475 KING1 "AT3G48530" [Arabidopsis thaliana (taxid:3702)]

 Score = 441 (160.3 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
 Identities = 88/251 (35%), Positives = 145/251 (57%)

Query:   189 DFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDXXXXXXXXXXKYRLRNVPIIEPGT 248
             +F++V+   E +K+T VR I  ++RWAPFL +  ++          KY+++++P+++ G 
Sbjct:   163 NFFEVLTSSELYKNTKVRDISGTFRWAPFLALQKENSFLTMLLLLSKYKMKSIPVVDLGV 222

Query:   249 PDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFK 308
               I+N ITQS V+  L  C G  WF+    + +S++GLP MS D +I I  +E +L+AFK
Sbjct:   223 AKIENIITQSGVIHMLAECAGLLWFEDWGIKTLSEVGLPIMSKDHIIKIYEDEPVLQAFK 282

Query:   309 RMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPD 368
              M+   IGGIPV+E   +K VGN+S+RD++ LL  PE++ ++R +T ++F+ +V      
Sbjct:   283 LMRRKRIGGIPVIERNSEKPVGNISLRDVQFLLTAPEIYHDYRSITTKNFLVSVREHLEK 342

Query:   369 SGKVNPPI-----TCKLESTLGSVIHSLASKSVHRIYXXXXXXXXXXXXITLRDVISCFI 423
              G  + PI      C    TL  +I  L ++ +HRIY            ITLRD+I+  +
Sbjct:   343 CGDTSAPIMSGVIACTKNHTLKELILMLDAEKIHRIYVVDDFGNLEGL-ITLRDIIARLV 401

Query:   424 FEPPNHLDNYF 434
              EP  +  ++F
Sbjct:   402 HEPSGYFGDFF 412

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009505 "plant-type cell wall" evidence=IDA

DICTYBASE|DDB_G0288201 DDB_G0288201 [Dictyostelium discoideum (taxid:44689)]

 Score = 153 (58.9 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
 Identities = 48/209 (22%), Positives = 97/209 (46%)

Query:   195 LQEEP-FKSTTVRSIIKSYRWAPFLPVATDDXXXXXXXXXXKYRLRNVPIIEPGTPDIKN 253
             LQ+   FK + V  I  S +  PF+ V ++           K  +R V ++     ++ N
Sbjct:    90 LQDRKLFKKSIVADICDSSKRDPFIVVDSETMLDNVAGLMVKNNIRRVAVLNQ-KGELCN 148

Query:   254 YITQSAVVQGLEGCKGRDW-FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKD 312
              IT S +++ +      D   + +    I ++ +    + +V++I S++   +AFK +  
Sbjct:   149 IITNSRIIECISHLFAMDKELEKLGKMTIKEMKI---GTSDVVSISSDKKAWDAFKLISK 205

Query:   313 NNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL-FSNFRQLTVRDFMNAVVPTTPDSGK 371
               + G+ V + Q K ++G +   D++  L+KP+  +     L V +++ A+   T     
Sbjct:   206 MGVSGVGVTDSQGK-LIGAIGDSDLK--LIKPKFQYLQLLHLPVSEYLQALKKVTD---- 258

Query:   372 VNPPITCKLESTLGSVIHSLASKSVHRIY 400
              N  I CK   T  SV+ +++ K  HR++
Sbjct:   259 -NNYIFCKPSDTFKSVVENVSEKKAHRVF 286

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0275177 sigI "CBS (cystathionine-beta-synthase) domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 137 (53.3 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
 Identities = 45/169 (26%), Positives = 87/169 (51%)

Query:   235 KYRLRNVPIIEP-GTPDIKNYITQSAVVQGLEG-CKGRDWFDIIASQPISDLGLPFMSSD 292
             K+ +  +PII+  GT  + + +TQS VV+ ++   +  +  D    Q + + G     + 
Sbjct:   126 KWGVHRLPIIDSEGT--LISILTQSRVVEYIQNHIQNINGLDKAIGQ-LKEFG-----TS 177

Query:   293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ 352
              VI+I+ + ++++AF+ M +N I  +PVV  Q   ++GN+S+ D++ +     LFS    
Sbjct:   178 SVISIKQDRMVIDAFRLMHENGISAVPVVN-QIGILIGNISVSDMKMVGYDGTLFSRMF- 235

Query:   353 LTVRDFMNAVVPTTPDSGKVNPPITCKLEST-LGSVIHSLASKSVHRIY 400
             L +  F+  + P   +   +   + C L+ST +  +I       VHR+Y
Sbjct:   236 LPIESFLE-MKPKNQNID-IFGKVLCVLDSTTIEEIITKFYISKVHRLY 282

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0278953 DDB_G0278953 "CBS (cystathionine-beta-synthase) domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 146 (56.5 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 50/224 (22%), Positives = 109/224 (48%)

Query:   186 LHEDFYKVILQEEPFKSTTVRSIIKSYRWAP--FLPVATDDXXXXXXXXXXKY-RLRNVP 242
             + +DF+K+  +EE FK+ TV  +++        F P+  +           +   +  +P
Sbjct:   123 IEQDFWKLSEEEEKFKTLTVNDVMRYPHTKDNRFSPITQNYSLFSAFEIFARDPNVHRIP 182

Query:   243 IIEP-GTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDE---VITIQ 298
             I++      + + +TQS +V+ +      D   ++ S+   DL +  MS  +   V+T++
Sbjct:   183 ILDNMANRHLVSILTQSQLVKYVY-----DNMSLLGSK--KDLIVKNMSGIQMGSVVTVK 235

Query:   299 SNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDF 358
             S+ L +EAFK +++ +I G+ V+   + +++  +S+RD++ +      F    +  V +F
Sbjct:   236 SSILAIEAFKILEEKDINGVAVLN-DKGELIDTLSVRDLKAIATDGSFFWKLYK-PVEEF 293

Query:   359 MNAVVPTTPDSGKVNP--PITCKLESTLGSVIHSLASKSVHRIY 400
             +  +     D   V P  P+ C    T  +V+  + + S+HR++
Sbjct:   294 LGFI---KNDQITVRPRNPVFCMDGDTFEAVLTKIYTNSIHRLF 334

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q48IU0 PSPPH_2494 "CBS domain protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 101 (40.6 bits), Expect = 0.00088, P = 0.00088
 Identities = 25/61 (40%), Positives = 39/61 (63%)

Query:   284 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI-RHLLL 342
             L L  + + +V TI  ++++L+A + M + NIG +PVVEG    +VG VS RD  R ++L
Sbjct:     8 LKLKDLQNQQVHTIGPDQMVLDALRLMAEKNIGALPVVEGNV--VVGVVSERDYARKVIL 65

Query:   343 K 343
             K
Sbjct:    66 K 66


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      444       359   0.00081  117 3  11 22  0.39    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  230 KB (2126 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.01u 0.11s 26.12t   Elapsed:  00:00:02
  Total cpu time:  26.01u 0.11s 26.12t   Elapsed:  00:00:02
  Start:  Fri May 10 14:38:41 2013   End:  Fri May 10 14:38:43 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CAR3	KINGL_ARATH	No assigned EC number	0.7139	0.9977	0.9910	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	444
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	1e-42
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	3e-16
cd04627	123	cd04627, CBS_pair_14, The CBS domain, named after	6e-14
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	1e-11
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	2e-11
cd04609	110	cd04609, CBS_pair_PALP_assoc2, This cd contains tw	2e-11
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	7e-11
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	1e-09
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	3e-09
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	6e-09
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	8e-09
COG3620	187	COG3620, COG3620, Predicted transcriptional regula	1e-08
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	2e-08
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	2e-08
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	7e-08
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	1e-07
cd04607	113	cd04607, CBS_pair_NTP_transferase_assoc, This cd c	1e-07
pfam00571	57	pfam00571, CBS, CBS domain	2e-07
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	4e-07
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	7e-07
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	8e-07
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	1e-06
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	2e-06
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	2e-06
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	2e-06
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	1e-05
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	1e-05
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	2e-05
cd04635	122	cd04635, CBS_pair_22, The CBS domain, named after	2e-05
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	2e-05
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	2e-05
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	2e-05
cd04621	135	cd04621, CBS_pair_8, The CBS domain, named after h	2e-05
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	3e-05
pfam00571	57	pfam00571, CBS, CBS domain	4e-05
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	4e-05
cd04627	123	cd04627, CBS_pair_14, The CBS domain, named after	6e-05
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	1e-04
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	2e-04
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	2e-04
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	2e-04
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	2e-04
cd04610	107	cd04610, CBS_pair_ParBc_assoc, This cd contains tw	3e-04
COG2524	294	COG2524, COG2524, Predicted transcriptional regula	3e-04
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	3e-04
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	4e-04
cd04615	113	cd04615, CBS_pair_2, The CBS domain, named after h	4e-04
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	5e-04
cd04641	120	cd04641, CBS_pair_28, The CBS domain, named after	6e-04
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	0.001
cd04621	135	cd04621, CBS_pair_8, The CBS domain, named after h	0.001
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	0.001
cd04626	111	cd04626, CBS_pair_13, The CBS domain, named after	0.001
cd04643	116	cd04643, CBS_pair_30, The CBS domain, named after	0.001
cd04615	113	cd04615, CBS_pair_2, The CBS domain, named after h	0.002
cd04626	111	cd04626, CBS_pair_13, The CBS domain, named after	0.002
cd04596	108	cd04596, CBS_pair_DRTGG_assoc, This cd contains tw	0.002
PRK13875	440	PRK13875, PRK13875, conjugal transfer protein TrbL	0.002
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	0.002
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	0.002
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	0.002
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	0.003
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	0.003
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	0.004
cd04590	111	cd04590, CBS_pair_CorC_HlyC_assoc, This cd contain	0.004

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score =  146 bits (370), Expect = 1e-42
 Identities = 55/130 (42%), Positives = 81/130 (62%), Gaps = 4/130 (3%)

Query: 292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 351
            +V++I S+E +L+AFK M+ NNI G+PVV+ +  K++GN+S  D++ LLL P+    +R
Sbjct: 1   SKVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYR 59

Query: 352 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVG 411
            +T ++       T  D  K  P ITC   STL  VI  L +  VHR++VV  EE + +G
Sbjct: 60  TITFKELSEKF--TDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVV-DEEGKPIG 116

Query: 412 VITLRDVISC 421
           VITL D+IS 
Sbjct: 117 VITLTDIISI 126

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 74.4 bits (183), Expect = 3e-16
 Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 17/129 (13%)

Query: 292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 351
            +V+T+  ++ + EA + M ++ I G+PVV+    ++VG V+ RD+   L +  L     
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDG-RLVGIVTERDLLRALAEGGL---DP 56

Query: 352 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVG 411
            +TV D M                +T   +++L      +    + R+ VV  E   +VG
Sbjct: 57  LVTVGDVMTR------------DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEG-RLVG 103

Query: 412 VITLRDVIS 420
           ++T  D++ 
Sbjct: 104 IVTRSDILR 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239999 cd04627, CBS_pair_14, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 67.7 bits (166), Expect = 6e-14
 Identities = 30/126 (23%), Positives = 62/126 (49%), Gaps = 5/126 (3%)

Query: 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW-FD 274
           PF+PV +  S+   + +L    +  V + E  + ++   ++Q  +V+ L          D
Sbjct: 2   PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLD 61

Query: 275 IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSI 334
            +   P+ DL +    + +VI+I  ++ +++A   M +  I  + VV   Q  ++GN+S+
Sbjct: 62  PLYPIPLRDLTIG---TSDVISINGDQPLIDALHLMHNEGISSVAVV-DNQGNLIGNISV 117

Query: 335 RDIRHL 340
            D+R L
Sbjct: 118 TDVRLL 123

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 123

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 19/129 (14%)

Query: 292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 351
            +VIT++ +  + +A   M +N +  +PVV+    K+VG ++ RDI   L         R
Sbjct: 7   KDVITVKPDTSVRDALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGK----R 60

Query: 352 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLAS-KSVHRIYVVAGEEAEVV 410
            L V++ M              P +T   ++ L   +  +     + R+ VV  +  ++V
Sbjct: 61  LLPVKEVMT------------KPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLV 108

Query: 411 GVITLRDVI 419
           G+ITL D++
Sbjct: 109 GIITLSDIL 117

Length = 117

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 60.6 bits (148), Expect = 2e-11
 Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 19/128 (14%)

Query: 292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI-RHLLLKPELFSNF 350
            +VIT++ +  + EA K M + NIG + VV+    ++VG  S RDI R + L+    ++ 
Sbjct: 1   RDVITVRPDATVAEAAKLMAEKNIGAVVVVDD-GGRLVGIFSERDIVRKVALRG---ASA 56

Query: 351 RQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVV 410
               V + M                IT   + T+   +  +  +    + VV  +  ++V
Sbjct: 57  LDTPVSEIMTR------------NVITVTPDDTVDEAMALMTERRFRHLPVV--DGGKLV 102

Query: 411 GVITLRDV 418
           G++++ DV
Sbjct: 103 GIVSIGDV 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239982 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 59.9 bits (146), Expect = 2e-11
 Identities = 26/128 (20%), Positives = 57/128 (44%), Gaps = 20/128 (15%)

Query: 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ 352
           +V+++  ++ + +A +RM++  +  +PVV+    ++VG++   D+   L++ +       
Sbjct: 2   DVVSVAPDDTVSQAIERMREYGVSQLPVVDDG--RVVGSIDESDLLDALIEGK---AKFS 56

Query: 353 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGV 412
           L VR+ M   +PT      +           L  ++            VV  E  + VG+
Sbjct: 57  LPVREVMGEPLPTVDPDAPI---------EELSELLDRGNVA------VVVDEGGKFVGI 101

Query: 413 ITLRDVIS 420
           IT  D++ 
Sbjct: 102 ITRADLLK 109

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 59.0 bits (144), Expect = 7e-11
 Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 21/128 (16%)

Query: 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI--RHLLLKPELFSNF 350
           +V+T+  ++ I EA + M+++++G +PV E  +  +VG V+ RDI  R +        + 
Sbjct: 2   DVVTVSPDDTIREAARLMREHDVGALPVCENDR--LVGIVTDRDIVVRAVAEG----RDP 55

Query: 351 RQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVV 410
              TV D M                +T   +  +      +    V R+ VV  ++  +V
Sbjct: 56  DTTTVGDVMTR------------GVVTVTEDDDVDEAARLMREHQVRRLPVV-DDDGRLV 102

Query: 411 GVITLRDV 418
           G+++L D+
Sbjct: 103 GIVSLGDL 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 55.3 bits (134), Expect = 1e-09
 Identities = 27/128 (21%), Positives = 57/128 (44%), Gaps = 19/128 (14%)

Query: 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ 352
           +++T   +  + EA  RM++  I  I VV+    + +G V+ RDI  LL          Q
Sbjct: 2   QILTCPPDTSLAEAASRMRERRISSIVVVDDG--RPLGIVTERDILRLLASGPDL----Q 55

Query: 353 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGV 412
             V + M++            P +T   +++L      +    +  + VV  ++ E++G+
Sbjct: 56  TPVGEVMSS------------PLLTVPADTSLYDARQLMREHGIRHL-VVVDDDGELLGL 102

Query: 413 ITLRDVIS 420
           ++  D++ 
Sbjct: 103 LSQTDLLQ 110

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 54.2 bits (131), Expect = 3e-09
 Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 22/133 (16%)

Query: 294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR-------HLLLKPEL 346
            IT+  +  ++EA K MK+N+I  +PVV+    K+VG V+ RD++         L   EL
Sbjct: 3   PITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWEL 60

Query: 347 FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE 406
           +    ++ V D M               PIT   ++++      +  + +  + VV  + 
Sbjct: 61  YYLLSKIKVSDIMTR------------DPITVSPDASVEEAAELMLERKISGLPVVDDQG 108

Query: 407 AEVVGVITLRDVI 419
             +VG+IT  D+ 
Sbjct: 109 -RLVGIITESDLF 120

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 53.4 bits (129), Expect = 6e-09
 Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 23/134 (17%)

Query: 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI-------RHLLLKPE 345
            VIT+  ++ +  A + M D++I  +PV+EG   K+VG V+ +DI       R L+    
Sbjct: 2   PVITVSPDDRVSHARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRH 59

Query: 346 LFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGE 405
                R L V D M              P IT + ++++  V   +   ++  + VV  +
Sbjct: 60  QERRIRNLPVSDIMTR------------PVITIEPDTSVSDVASLMLENNIGGLPVV--D 105

Query: 406 EAEVVGVITLRDVI 419
           + ++VG++T  D++
Sbjct: 106 DGKLVGIVTRTDIL 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 52.9 bits (128), Expect = 8e-09
 Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 21/125 (16%)

Query: 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ 352
           + IT+  +  + EA + M +  I G+PVV+    K+VG V+ RD+R        F     
Sbjct: 3   DPITVSPDATVAEALELMAEYGISGLPVVDD-DGKLVGIVTNRDLR--------FETDLD 53

Query: 353 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGV 412
             V + M      TP+       +T    ++L   +  L    + ++ VV  +E ++ G+
Sbjct: 54  KPVSEVM------TPE-----NLLTTVEGTSLEEALELLHEHKIEKLPVV-DDEGKLKGL 101

Query: 413 ITLRD 417
           IT++D
Sbjct: 102 ITVKD 106

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|226147 COG3620, COG3620, Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 33/175 (18%)

Query: 244 IEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELI 303
           +E G  D +   T   +++ LE  +       I ++ I       M S  V+++  ++ I
Sbjct: 38  LEAGKVDPR-LSTVKRILEALEEAEK----TRITAKTI-------MHSP-VVSVSPDDSI 84

Query: 304 LEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVV 363
            +    M+D  I  +PV+E    K+VG+++  DI   LL  E   + R L VR+ M    
Sbjct: 85  SDVVNLMRDKGISQLPVIEED--KVVGSITENDIVRALL--EGMESIRSLRVREVMGEPF 140

Query: 364 PTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDV 418
           PT      V+P  +        +VI  L         V+  E  +VVG+IT  D+
Sbjct: 141 PT------VSPDESL-------NVISQLLE---EHPAVLVVENGKVVGIITKADI 179

Length = 187

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 30/115 (26%), Positives = 60/115 (52%), Gaps = 19/115 (16%)

Query: 232 LLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW-FDIIAS--------QPIS 282
           ++ +   R +P+++ GT  +   IT + +++ L    G    F+ I +        +P+ 
Sbjct: 18  IMVRNGFRRLPVVDEGTGKLVGIITATDILKYL----GGGEKFNKIKTGNGLEAINEPVR 73

Query: 283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
            +    M+ + VITI  ++ I +A + M +  +GG+PVV+    K+VG V+ RD+
Sbjct: 74  SI----MTRN-VITITPDDSIKDAAELMLEKRVGGLPVVDDDG-KLVGIVTERDL 122

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 21/133 (15%)

Query: 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR------HLLLKPEL 346
           +V+TI     I EA + M+++ I  +PVV+ +  ++VG V+ RD+R         L    
Sbjct: 2   DVVTITPTTTIAEALELMREHKIRHLPVVDEEG-RLVGIVTDRDLRDASPSPFTTLSEHE 60

Query: 347 FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE 406
                ++ V++ M                IT     T+      +    +  + VV  E+
Sbjct: 61  LYLLLKMPVKEIM------------TKDVITVHPLDTVEEAALLMREHRIGCLPVV--ED 106

Query: 407 AEVVGVITLRDVI 419
             +VG+IT  D++
Sbjct: 107 GRLVGIITETDLL 119

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 50.5 bits (121), Expect = 7e-08
 Identities = 25/122 (20%), Positives = 58/122 (47%), Gaps = 13/122 (10%)

Query: 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDI 275
             + V+ DD++   L L+ ++ +  +P+++     +   +T+  +++ L           
Sbjct: 2   DVVTVSPDDTVAEALRLMLEHGISGLPVVD-DDGRLVGIVTERDLLRALAEGGLDP---- 56

Query: 276 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 335
                + D     M+ D V+T+  +  + EA + M ++ I  +PVV+ +  ++VG V+  
Sbjct: 57  --LVTVGD----VMTRD-VVTVSPDTSLEEAAELMLEHGIRRLPVVDDEG-RLVGIVTRS 108

Query: 336 DI 337
           DI
Sbjct: 109 DI 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 21/134 (15%)

Query: 294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQL 353
           V+T+     I+EA K M  N    +PVV+    K+VG ++  DI   L   E F+  +  
Sbjct: 3   VVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTG 62

Query: 354 TVRDFMNAVVP--------TTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGE 405
              + +N  V         T      +       LE  +G +             VV  +
Sbjct: 63  NGLEAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLP------------VVDDD 110

Query: 406 EAEVVGVITLRDVI 419
             ++VG++T RD++
Sbjct: 111 G-KLVGIVTERDLL 123

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239980 cd04607, CBS_pair_NTP_transferase_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 18/126 (14%)

Query: 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLT 354
           + +  +  IL+A +++ D N   I +V  +  +++G V+  DIR  LLK           
Sbjct: 5   LLVSPDASILDALRKI-DKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLSL----DDP 59

Query: 355 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVIT 414
           V + MN              PIT K+ S+   ++  +  +S+  + ++  EE  VVG+ T
Sbjct: 60  VSEVMNRN------------PITAKVGSSREEILALMRERSIRHLPIL-DEEGRVVGLAT 106

Query: 415 LRDVIS 420
           L D++S
Sbjct: 107 LDDLLS 112

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343
            M+ D V+T+  +  + EA + M++N I  +PVV  +  K+VG V++RD+   LL+
Sbjct: 4   IMTPD-VVTVPPDTSLEEALELMRENGISRLPVV-DEDGKLVGIVTLRDLLRALLE 57

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 46.4 bits (111), Expect = 4e-07
 Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342
           +V+T+  +  + EA + +++N I  +PVV+ +  ++VG V+ RDI   L 
Sbjct: 1   DVVTVSPDTTLEEALELLRENGIRRLPVVDEEG-RLVGIVTRRDIIKALA 49

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 21/144 (14%)

Query: 294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE------LF 347
            IT  +++ I +A + +++N I G PV++G   K+VG VS  DI  LL+  +      L 
Sbjct: 3   PITCNADDTISDAARLLRENKISGAPVLDGG--KLVGIVSESDILKLLVTHDPSGNLWLP 60

Query: 348 SNFR--QLTVRDFMN--AVVPTTPDSGKV-------NPPITCKLESTLGSVIHSLASKSV 396
           S     +L +R+F+N         D+GK+          IT   ++++      +    +
Sbjct: 61  SPLELIELPLREFINWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKI 120

Query: 397 HRIYVVAGEEAEVVGVITLRDVIS 420
            R+ VV  E+  +VG++T  D+I 
Sbjct: 121 KRLPVV--EDGRLVGIVTRGDIIE 142

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.2 bits (113), Expect = 8e-07
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 20/127 (15%)

Query: 294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQL 353
           V+T+  +  I EA K M + N+G + VV+   ++ +G V+ RDI                
Sbjct: 3   VVTVDPDTSIREAAKLMAEENVGSVVVVDP-DERPIGIVTERDI---------------- 45

Query: 354 TVRDFMNAVVPTTP-DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGV 412
            VR     +   TP         +T   +  +      +   ++    VV  +  E+VGV
Sbjct: 46  -VRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVV-DKGGELVGV 103

Query: 413 ITLRDVI 419
           I++RD++
Sbjct: 104 ISIRDLV 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 31/135 (22%), Positives = 65/135 (48%), Gaps = 8/135 (5%)

Query: 292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 351
            +VIT++ ++ + +  + +    I G+PVV+  + ++VG VS  D+   + K +      
Sbjct: 1   KDVITVKKDDTLRDVVEILLTGKISGVPVVDN-EGRVVGIVSEGDLIRKIYKGKGLFYVT 59

Query: 352 QLTVRDFMNAVVPTTPDSGKVN-----PPITCKLESTLGSVIHSLASKSVHRIYVVAGEE 406
            L    F++          KV        IT   ++T+  V   ++ K++ R+ VV  ++
Sbjct: 60  LLYSVIFLDESKIKKLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVV--DD 117

Query: 407 AEVVGVITLRDVISC 421
            ++VG+I+  D+I  
Sbjct: 118 GKLVGIISRGDIIRS 132

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 17/120 (14%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIEPGTPD-IKNYITQSAVVQGLEGCKGRDWFDIIAS 278
           V  D S+   LLL+S+  +  VP+++ G    I   IT+  ++             + A 
Sbjct: 12  VKPDTSVRDALLLMSENGVSAVPVVDDGKLVGI---ITERDIL-----------RALAAG 57

Query: 279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDN-NIGGIPVVEGQQKKIVGNVSIRDI 337
                     M+   V+T+  +  + EA + M +   I  +PVV+    K+VG +++ DI
Sbjct: 58  GKRLLPVKEVMTKP-VVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI 116

Length = 117

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 29/131 (22%)

Query: 294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRD----IRHLLLKPELFSN 349
           V T++    I EA + +       +PVVEG   ++VG +S RD    +RH          
Sbjct: 4   VKTVRPEATIEEARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRH---------G 52

Query: 350 FRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEV 409
                V+D+M+  V T      V P      ++ L  V   +    + R+ VV      +
Sbjct: 53  LGHAPVKDYMSTDVVT------VPP------DTPLSEVQELMVEHDIGRVPVVEDG--RL 98

Query: 410 VGVITLRDVIS 420
           VG++T  D++ 
Sbjct: 99  VGIVTRTDLLR 109

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 19/128 (14%)

Query: 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ 352
             +T   +  I EA + M ++ +  + VV+    ++VG V+ RD+R+ ++   L  +   
Sbjct: 2   PPVTCSPDTTIREAARLMTEHRVSSLLVVDDG--RLVGIVTDRDLRNRVVAEGLDPD--- 56

Query: 353 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGV 412
             V + M A            PPIT   ++T+   +  +  + +H + VV  ++  +VGV
Sbjct: 57  TPVSEVMTA------------PPITIPPDATVFEALLLMLERGIHHLPVV--DDGRLVGV 102

Query: 413 ITLRDVIS 420
           I+  D++ 
Sbjct: 103 ISATDLLR 110

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 43.6 bits (104), Expect = 1e-05
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 7/60 (11%)

Query: 278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
             P+S++    M++   ITI  +  + EA   M +  I  +PVV+    ++VG +S  D+
Sbjct: 56  DTPVSEV----MTAP-PITIPPDATVFEALLLMLERGIHHLPVVDD--GRLVGVISATDL 108

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 20/127 (15%)

Query: 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ 352
            +IT+  N  + EA +    ++I G PVV+    K+VG V++ DI H      +      
Sbjct: 2   PLITLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHA-----IARGLEL 54

Query: 353 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGV 412
             V+D M   V            IT   +  L   I  +   +V R+ +V  +E   VG+
Sbjct: 55  AKVKDVMTKDV------------ITIDEDEQLYDAIRLMNKHNVGRL-IVTDDEGRPVGI 101

Query: 413 ITLRDVI 419
           IT  D++
Sbjct: 102 ITRTDIL 108

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 12/125 (9%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQS----AVVQGLEGCKGRDWFDI 275
           V  D S++  L L+ +  +R +P+++ G   +   +T      A           + + +
Sbjct: 6   VTPDTSLMEALKLMKENSIRRLPVVDRGK--LVGIVTDRDLKLASPSKATTLDIWELYYL 63

Query: 276 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 335
           ++   +SD     M+ D  IT+  +  + EA + M +  I G+PVV+  Q ++VG ++  
Sbjct: 64  LSKIKVSD----IMTRD-PITVSPDASVEEAAELMLERKISGLPVVDD-QGRLVGIITES 117

Query: 336 DIRHL 340
           D+   
Sbjct: 118 DLFRA 122

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|240006 cd04635, CBS_pair_22, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 24/129 (18%), Positives = 60/129 (46%), Gaps = 10/129 (7%)

Query: 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRD-IRHLLLKPELFSNFR 351
           E +T   ++ + + +  M ++   G+PVV+ +  +++G ++ RD IR   ++  +    R
Sbjct: 2   EPVTCTPDDPVSKVWDLMLESGFTGLPVVQ-KAGELIGIITRRDIIRAGSVRTSVEDQQR 60

Query: 352 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVG 411
             T        + +T       P  +   + ++ + +  +    + R+ VV  E+ ++VG
Sbjct: 61  TQTKASPTVEKIMST-------PVYSVTPDDSIATAVELMLEHDIGRLPVV-NEKDQLVG 112

Query: 412 VITLRDVIS 420
           ++   DV+ 
Sbjct: 113 IVDRHDVLK 121

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 16/127 (12%)

Query: 294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQL 353
           V+TI  +  + E    +  +     PVV     ++VG VS+ DIR +L  P L+     +
Sbjct: 3   VVTIPEDTPLNELLDVIAHSPENNFPVV-DDDGRLVGIVSLDDIREILFDPSLYDL---V 58

Query: 354 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVI 413
              D M              PP+    E +L   +         ++ VV  +  +++G++
Sbjct: 59  VASDIMT------------KPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGIL 106

Query: 414 TLRDVIS 420
           +  D++S
Sbjct: 107 SRSDLLS 113

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 22/124 (17%)

Query: 291 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNF 350
               +TI  +  + EA K M+D  +  + VV+    K++G VS+  +             
Sbjct: 1   IKNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDN-KLLGIVSLESLEQAYK-------- 51

Query: 351 RQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVV 410
              ++ D M   V T      V P      +++L  V+  +  +    + VV  E+ ++V
Sbjct: 52  EAKSLEDIMLEDVFT------VQP------DASLRDVLGLVLKRGPKYVPVV-DEDGKLV 98

Query: 411 GVIT 414
           G+IT
Sbjct: 99  GLIT 102

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 46.3 bits (111), Expect = 2e-05
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 21/125 (16%)

Query: 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ 352
           + +T+  +  + EA   M    I G+PVV+    K+VG ++ RD+R        F     
Sbjct: 96  DPVTVTPDTTLAEALALMARYGISGVPVVDENG-KLVGIITNRDVR--------FETDLS 146

Query: 353 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGV 412
             V + M      T +       +T    +TL   +  L    + ++ VV  +   + G+
Sbjct: 147 QPVSEVM------TKE-----RLVTVPEGTTLEEALELLHEHRIEKLPVV-DDNGRLKGL 194

Query: 413 ITLRD 417
           IT++D
Sbjct: 195 ITVKD 199

Length = 486

>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 2/49 (4%)

Query: 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
           + ++E+IT+  N+ +++A K M + NI G+PVV+     IVG ++  DI
Sbjct: 86  IMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDND--NIVGVITKTDI 132

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 135

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 19/125 (15%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIEPG-------TPDIKNYITQSAVVQGLEGCKGRDW 272
           V+ DD +     L+  + +  +P+IE G         DI + +            + R  
Sbjct: 6   VSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFR-----PLVRDRHQ 60

Query: 273 FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNV 332
              I + P+SD+    M+   VITI+ +  + +    M +NNIGG+PVV+    K+VG V
Sbjct: 61  ERRIRNLPVSDI----MTRP-VITIEPDTSVSDVASLMLENNIGGLPVVD--DGKLVGIV 113

Query: 333 SIRDI 337
           +  DI
Sbjct: 114 TRTDI 118

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 40.6 bits (96), Expect = 4e-05
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 13/66 (19%)

Query: 355 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVIT 414
           V+D M                +T   +++L   +  +    + R+ VV  E+ ++VG++T
Sbjct: 1   VKDIMT------------PDVVTVPPDTSLEEALELMRENGISRLPVV-DEDGKLVGIVT 47

Query: 415 LRDVIS 420
           LRD++ 
Sbjct: 48  LRDLLR 53

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 19/127 (14%)

Query: 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ 352
           +V+T+  +  + E    M      G PVV+    ++VG V++ DIR +  +         
Sbjct: 2   DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGR----EAT 55

Query: 353 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGV 412
           + V D M               P+T   + TL   +  +A + + R+ VV      +VG+
Sbjct: 56  VLVGDVMT------------RDPVTASPDETLRDALKRMAERDIGRLPVVDD-SGRLVGI 102

Query: 413 ITLRDVI 419
           ++  D++
Sbjct: 103 VSRSDLL 109

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239999 cd04627, CBS_pair_14, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE 425
            P I     ++L   I  L S  +HR+ V   E  EV+G+++ R ++  F++E
Sbjct: 1   EPFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVE-FLWE 52

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 123

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
            MS+  +ITI  N  + EA K M  + I  +PVV+    ++VG V+  DI
Sbjct: 63  VMST-PLITIDPNASLNEAAKLMAKHGIKRLPVVDD--DELVGIVTTTDI 109

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 374 PPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI 423
             +T   ++TL   +  L    + R+ VV  EE  +VG++T RD+I    
Sbjct: 1   DVVTVSPDTTLEEALELLRENGIRRLPVV-DEEGRLVGIVTRRDIIKALA 49

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 23/125 (18%), Positives = 54/125 (43%), Gaps = 16/125 (12%)

Query: 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDI 275
           P + +  + ++     L + + +   P+++ G   +   +T S +   +           
Sbjct: 2   PLITLNPNATLREAARLFNTHHIHGAPVVDDG--KLVGIVTLSDIAHAI--------ARG 51

Query: 276 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 335
           +    + D+    M+ D VITI  +E + +A + M  +N+G + V +  + + VG ++  
Sbjct: 52  LELAKVKDV----MTKD-VITIDEDEQLYDAIRLMNKHNVGRLIVTD-DEGRPVGIITRT 105

Query: 336 DIRHL 340
           DI   
Sbjct: 106 DILRS 110

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 9/79 (11%)

Query: 291 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNF 350
           S  V+TI  +  I EA K M + NI  +PVV+    ++VG V+  DI   + + +     
Sbjct: 1   SRPVVTISEDASIKEAAKLMIEENINHLPVVDE-DGRLVGIVTSWDISKAVARDK----- 54

Query: 351 RQLTVRDFMNA-VVPTTPD 368
              +V D M   V+  TPD
Sbjct: 55  --KSVEDIMTRNVITATPD 71

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 34/145 (23%)

Query: 294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI---------------R 338
           V+T+     + EA + M DN+I G+PVV+    ++VG VS  D+                
Sbjct: 4   VVTVSPETSVAEAARLMLDNHISGLPVVD-DDGRLVGIVSEGDLLRRAELGTERRRARWL 62

Query: 339 HLLLKPEL----FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASK 394
            LL   E     F       V D M              P +T   ++ L  V   +   
Sbjct: 63  DLLAGAEELAAAFVRSHGRKVADVMTR------------PVVTVGEDTPLAEVAELMEEH 110

Query: 395 SVHRIYVVAGEEAEVVGVITLRDVI 419
            + R+ VV G    +VG+++  D++
Sbjct: 111 RIKRVPVVRGG--RLVGIVSRADLL 133

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|239983 cd04610, CBS_pair_ParBc_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 24/126 (19%)

Query: 294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQL 353
           VIT+  +  + +  K +K+    G PVV+    K+VG VS RD   LL K          
Sbjct: 4   VITVSPDNTVKDVIKLIKETGHDGFPVVDN--GKVVGIVSARD---LLGKDPD------E 52

Query: 354 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVI 413
           TV + M      + D     P      E  +      +    + ++ VV  E   +VG+I
Sbjct: 53  TVEEIM------SKDLVVAVP------EMDIMDAARVMFRTGISKLPVV-DENNNLVGII 99

Query: 414 TLRDVI 419
           T  DVI
Sbjct: 100 TNTDVI 105

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 107

>gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 20/135 (14%)

Query: 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262
             V++++        + V  DD++     L  +  +R  P+++     I   IT S + +
Sbjct: 172 EKVKNLMSK----KLITVRPDDTLREAAKLFYEKGIRGAPVVDDD--KIVGIITLSDIAK 225

Query: 263 GLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVE 322
            +                +SD          VITI  +E I +A + M  NN+G + V +
Sbjct: 226 AIANGN--------LDAKVSDYMRK-----NVITINEDEDIYDAIRLMNKNNVGRLLVTD 272

Query: 323 GQQKKIVGNVSIRDI 337
               K VG ++  DI
Sbjct: 273 -SNGKPVGIITRTDI 286

Length = 294

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 23/138 (16%)

Query: 291 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRD-IRH------LLLK 343
           S +V+T+  +  + EA+  ++ + I  +PVV+G + ++VG V+ RD +RH        L+
Sbjct: 1   SRDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDR-RLVGIVTQRDLLRHARPDGRRPLR 59

Query: 344 PELFSNFRQLTVRDFMNAVVPT-TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVV 402
             L    +  TV D M+  V T  PD+     PI          ++  LA    H + VV
Sbjct: 60  GRLRGRDKPETVGDIMSPPVVTVRPDT-----PI--------AELVPLLADGGHHHVPVV 106

Query: 403 AGEEAEVVGVITLRDVIS 420
             E+  +VG++T  D+I+
Sbjct: 107 -DEDRRLVGIVTQTDLIA 123

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 20/128 (15%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIK--NYITQSAVVQGLEGCKGRDW-FDII 276
           ++ + ++  VL L+ +  +  +P++E G    K    IT             RD  F   
Sbjct: 93  ISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIIT------------KRDIRFVKD 140

Query: 277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRD 336
             +P+S++    M+ +EVIT+     + EA K + ++ I  +PVV+    ++VG ++++D
Sbjct: 141 KGKPVSEV----MTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNG-ELVGLITMKD 195

Query: 337 IRHLLLKP 344
           I      P
Sbjct: 196 IVKRRKFP 203

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|239988 cd04615, CBS_pair_2, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)

Query: 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
           M+S  VITI +N+ I +A   M +NNI  +PV++  + K+ G V+  DI
Sbjct: 64  MNSP-VITIDANDSIAKARWLMSNNNISRLPVLDD-KGKVGGIVTEDDI 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 20/110 (18%)

Query: 228 SVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLP 287
            VL LL +Y++  VP+++    ++   IT+                D++ +     L L 
Sbjct: 14  DVLELLKEYKVSGVPVVKKSG-ELVGIITRK---------------DLLRNPEEEQLAL- 56

Query: 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
            M+ D   T+  ++ + EA K M +NNI  +PVV+    K+VG V++ DI
Sbjct: 57  LMTRD-PPTVSPDDDVKEAAKLMVENNIRRVPVVDD--GKLVGIVTVADI 103

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.1 bits (92), Expect = 6e-04
 Identities = 30/127 (23%), Positives = 60/127 (47%), Gaps = 10/127 (7%)

Query: 294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQL 353
           + T + +  +++    + +  +  +P+V+ +  K+V   S  D+ +L  K   ++N   L
Sbjct: 3   IATARPDTPLIDVLDMLVERRVSALPIVD-ENGKVVDVYSRFDVINLA-KEGAYNNLD-L 59

Query: 354 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVI 413
           TV +   A+   + D   V    TC  +  L ++   +    VHR+ VV  E   V G+I
Sbjct: 60  TVGE---ALERRSQDFEGV---RTCSPDDCLRTIFDLIVKARVHRLVVVD-ENKRVEGII 112

Query: 414 TLRDVIS 420
           +L D++ 
Sbjct: 113 SLSDILQ 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.2 bits (90), Expect = 0.001
 Identities = 28/125 (22%), Positives = 60/125 (48%), Gaps = 27/125 (21%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIEPGTP-------DIKNYITQSAVVQGLEGCKGRDW 272
           V+ DD++     L+ ++ +  +P+ E           DI        VV+ +   +GRD 
Sbjct: 6   VSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDI--------VVRAV--AEGRD- 54

Query: 273 FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNV 332
                +  + D+    M+   V+T+  ++ + EA + M+++ +  +PVV+    ++VG V
Sbjct: 55  ---PDTTTVGDV----MTRG-VVTVTEDDDVDEAARLMREHQVRRLPVVDD-DGRLVGIV 105

Query: 333 SIRDI 337
           S+ D+
Sbjct: 106 SLGDL 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 35/149 (23%)

Query: 292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 351
           +++ T+     +L     M+ N +G + VV+    K VG ++ RD+     +       +
Sbjct: 1   EDIATVHPEHSLLHVVDEMEKNGVGRVIVVDD-NGKPVGVITYRDLAFAEFEDNERGLPK 59

Query: 352 Q--------------------LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSL 391
           +                    L   D M      T +   V+P         +      +
Sbjct: 60  KSIKMKRKAGQKRYRYVKEVPLVAEDIM------TEEIITVSP------NDDVVDAAKLM 107

Query: 392 ASKSVHRIYVVAGEEAEVVGVITLRDVIS 420
              ++  + VV  +   +VGVIT  D+  
Sbjct: 108 LEANISGLPVVDND--NIVGVITKTDICR 134

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 135

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 291 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
           + + +T   +E + +A KRM + +IG +PVV+    ++VG VS  D+
Sbjct: 63  TRDPVTASPDETLRDALKRMAERDIGRLPVVDD-SGRLVGIVSRSDL 108

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239998 cd04626, CBS_pair_13, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 19/127 (14%)

Query: 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ 352
           +  TI  +  I EA   M   N   I V +  ++K+ G V+  DI    L  +LF +F +
Sbjct: 2   DFPTIDEDASIREALHEMLKYNTNEIIVKD-NEEKLKGVVTFTDI----LDLDLFESFLE 56

Query: 353 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGV 412
             V + ++                    E T+   +  +  K + R+ VV  ++ +++GV
Sbjct: 57  KKVFNIVS------------QDVFYVNEEDTIDEALDIMREKQIGRLPVV--DDNKLIGV 102

Query: 413 ITLRDVI 419
           +  +D++
Sbjct: 103 VRTKDIL 109

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 111

>gnl|CDD|240014 cd04643, CBS_pair_30, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 18/130 (13%)

Query: 292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL--FSN 349
           +EV  +Q    +  A   +  +    IPV++ ++ K VG +S+ DI   L   E      
Sbjct: 1   EEVAYVQDTNTLRHALLVLTKHGYSAIPVLD-KEGKYVGTISLTDILWKLKGLENLDLER 59

Query: 350 FRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEV 409
              L V D MN  VP                ++ +  ++H L          V  ++   
Sbjct: 60  LVDLKVIDVMNTDVP------------VIIDDADIEEILHLLID---QPFLPVVDDDGIF 104

Query: 410 VGVITLRDVI 419
           +G+IT R+++
Sbjct: 105 IGIITRREIL 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 116

>gnl|CDD|239988 cd04615, CBS_pair_2, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 26/125 (20%), Positives = 56/125 (44%), Gaps = 17/125 (13%)

Query: 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLT 354
             +  N  I  A   M  +    +PVV+  +K++VG ++  D+    L+ E   + +   
Sbjct: 4   SCVVLNTDIARAVAEMYTSGSRALPVVD-DKKRLVGIITRYDVLSYALESEELKDAK--- 59

Query: 355 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVIT 414
           VR+ MN+            P IT     ++      +++ ++ R+ V+  +  +V G++T
Sbjct: 60  VREVMNS------------PVITIDANDSIAKARWLMSNNNISRLPVLDDK-GKVGGIVT 106

Query: 415 LRDVI 419
             D++
Sbjct: 107 EDDIL 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239998 cd04626, CBS_pair_13, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 271 DWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVG 330
           D  D+   +   +  +  + S +V  +   + I EA   M++  IG +PVV+    K++G
Sbjct: 44  DILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVD--DNKLIG 101

Query: 331 NVSIRDIR 338
            V  +DI 
Sbjct: 102 VVRTKDIL 109

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 111

>gnl|CDD|239969 cd04596, CBS_pair_DRTGG_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 23/101 (22%)

Query: 319 PVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITC 378
           PVV+ ++ K+VG V+ +D+     K          T+   M               PIT 
Sbjct: 29  PVVD-EKNKVVGIVTSKDV---AGKD------PDTTIEKVMT------------KNPITV 66

Query: 379 KLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVI 419
             ++++ SV H +  + +  + VV  +  +++G+I+ +DV+
Sbjct: 67  NPKTSVASVAHMMIWEGIEMLPVV-DDNKKLLGIISRQDVL 106

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 108

>gnl|CDD|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 28/67 (41%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 118 AAAAFSVGTATAAGVGTGTVGALGA-LALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAG 176
           A AA  VGT  AAG G     A GA LA G    AA      A  GAA AGG ++   AG
Sbjct: 271 AGAA--VGTGLAAG-GAAVAAAAGAGLAAGGGAAAAGGAAAAARGGAAAAGGASSAYSAG 327

Query: 177 KDAPTAA 183
               + A
Sbjct: 328 AAGGSGA 334

Length = 440

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.5 bits (88), Expect = 0.002
 Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 30/132 (22%)

Query: 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSN-FRQL 353
           +T   +  + EA +++  + I G PVV+     +VG +S +D     LK  L S+     
Sbjct: 4   VTFTPDMSVTEAVEKLLKSKISGGPVVDD-NGNLVGFLSEQD----CLKQLLESSYHCDG 58

Query: 354 --TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLAS---KSVHRIY-VVAGEEA 407
             TVRD M                +T   + +    I  LA    K+  + Y VV  ++ 
Sbjct: 59  VATVRDIM------------TTEVLTVSPDDS----IVDLAQLMLKAKPKRYPVV--DDG 100

Query: 408 EVVGVITLRDVI 419
           ++VG I+ RDV+
Sbjct: 101 KLVGQISRRDVL 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 39.8 bits (94), Expect = 0.002
 Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
           +  D+ +T+  +  + EA+  M +NN+  +PVV+ ++ K++G VS+ D+
Sbjct: 73  LEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVD-EEGKLLGLVSLSDL 120

Length = 546

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
           M+ D  IT+  +  + EA K + +N+I  +PVV+    +++G ++ +D+
Sbjct: 73  MTRD-PITVSPDTPVDEASKLLLENSISCLPVVDENG-QLIGIITWKDL 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 8/85 (9%)

Query: 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI-RHLL-----LKPEL 346
            V+T+  ++ + +A + M+++ I  +PVV  +  K+VG ++ RD+ R  L        E 
Sbjct: 2   PVVTLSEDDSLADAEELMREHRIRHLPVVN-EDGKLVGLLTQRDLLRAALSSLSDNGEES 60

Query: 347 FSNFRQLTVRDFMNA-VVPTTPDSG 370
            +  R + V + M   V+  TPD+ 
Sbjct: 61  LTKERDVPVAEVMKTDVLTVTPDTP 85

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 19/127 (14%)

Query: 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ 352
           +++ +   + + E  + + ++    IPV +G    I+G V ++D    LL+  L      
Sbjct: 217 DIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKD----LLR-ALLDGQSD 271

Query: 353 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGV 412
           L +R  +       P++             +L  ++     +  H + +V  E   V G+
Sbjct: 272 LDLRVLVRP-PLFVPET------------LSLSDLLEEFREERTH-MAIVVDEYGGVEGL 317

Query: 413 ITLRDVI 419
           +TL D+I
Sbjct: 318 VTLEDII 324

Length = 429

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 12/122 (9%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQ----SAVVQGLEGCKGRDWFDI 275
           ++ DDS+     L+ ++R+R++P++      +   +TQ     A +  L    G +    
Sbjct: 6   LSEDDSLADAEELMREHRIRHLPVVN-EDGKLVGLLTQRDLLRAALSSLSDN-GEESLTK 63

Query: 276 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 335
               P++++    M +D V+T+  +  + EA + M +N IG +PVV+  +  +VG ++  
Sbjct: 64  ERDVPVAEV----MKTD-VLTVTPDTPLREAAEIMVENKIGCLPVVDD-KGTLVGIITRS 117

Query: 336 DI 337
           D 
Sbjct: 118 DF 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239963 cd04590, CBS_pair_CorC_HlyC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

 Score = 36.7 bits (86), Expect = 0.004
 Identities = 22/127 (17%), Positives = 55/127 (43%), Gaps = 19/127 (14%)

Query: 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ 352
           +++ + +++ + E  + + ++     PV +G    I+G V ++D+   L + E   + R 
Sbjct: 2   DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRD 61

Query: 353 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGV 412
           L +R          P+S  ++             ++  +  +  H + +V  E     G+
Sbjct: 62  L-LRP-----PLFVPESTPLD------------DLLEEMRKERSH-MAIVVDEYGGTAGL 102

Query: 413 ITLRDVI 419
           +TL D++
Sbjct: 103 VTLEDIL 109

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. The second CBS domain in this CD is degenerate. Length = 111

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	444
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.97
COG2524	294	Predicted transcriptional regulator, contains C-te	99.76
COG2524	294	Predicted transcriptional regulator, contains C-te	99.71
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.64
COG3620	187	Predicted transcriptional regulator with C-termina	99.63
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.6
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.58
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.57
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.56
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.56
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.56
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.56
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.55
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.53
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.53
COG3620	187	Predicted transcriptional regulator with C-termina	99.52
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.52
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.51
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.51
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.5
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.5
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.49
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.49
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.49
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.49
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.49
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.48
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.48
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.48
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.48
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.47
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.47
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.47
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.47
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.47
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.47
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.47
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.47
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.47
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.47
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.46
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.46
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.46
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.46
COG2905	610	Predicted signal-transduction protein containing c	99.46
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.45
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.45
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.45
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.45
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.45
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.44
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.44
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.44
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.44
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.43
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.43
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.43
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.43
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.42
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.42
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.42
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.42
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.41
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.41
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.41
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.41
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.4
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.4
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.4
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.4
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.39
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.39
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.39
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.39
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.39
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.38
PRK11573	413	hypothetical protein; Provisional	99.38
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.38
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.38
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.38
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.38
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.38
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.38
COG4109	432	Predicted transcriptional regulator containing CBS	99.37
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.37
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.37
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.37
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.37
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.37
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.37
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.36
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.36
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.36
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.36
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.36
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.36
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.36
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.35
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.35
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.35
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.34
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.34
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.34
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.34
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.34
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.34
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.34
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.33
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.33
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.33
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.33
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.32
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.32
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.32
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.32
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.32
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.32
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.31
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.31
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.31
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.31
COG0517	117	FOG: CBS domain [General function prediction only]	99.3
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.3
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.3
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.3
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.29
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.29
COG2905	610	Predicted signal-transduction protein containing c	99.29
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.29
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.28
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.28
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.28
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.28
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.28
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.27
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.27
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.27
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.27
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.27
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.27
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.26
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.26
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.26
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.26
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.26
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.26
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.26
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.25
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.25
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.24
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.24
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.23
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.22
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.22
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.22
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.22
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.2
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.2
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.2
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.2
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.2
COG0517	117	FOG: CBS domain [General function prediction only]	99.2
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.19
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.16
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.16
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.15
COG4109	432	Predicted transcriptional regulator containing CBS	99.15
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.14
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.14
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.11
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.11
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.11
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.08
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.08
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.08
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	99.07
PRK11573	413	hypothetical protein; Provisional	99.07
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.05
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.02
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.97
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.94
COG1253	429	TlyC Hemolysins and related proteins containing CB	98.92
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.8
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.74
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.74
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.72
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.71
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.69
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.58
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.38
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.33
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.29
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.21
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.19
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.93
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.87
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.72
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.67
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.62
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.51
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	97.03
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	96.93
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	95.17
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	94.74
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	93.13
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	91.49
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	91.37
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	90.85
KOG2118	498	consensus Predicted membrane protein, contains two	87.44

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.97  E-value=6.5e-30  Score=253.02  Aligned_cols=343  Identities=23%  Similarity=0.352  Sum_probs=270.9

Q ss_pred             cchhhHHHHHhhhccCCCChHHHHHHHhhcCCccCCCCCCCCCeEEEeCCCCHHHHHHHHHHCCCccCceecCCCCCCCC
Q 013373           14 SSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSD   93 (444)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~v~~~~si~~A~~~l~~~~i~~~PV~d~~~~~~~~   93 (444)
                      |.....-+........+....+.+..|++...+.+++. .+.+++.++..+++.+|+.+|..++.+++||||.+.     
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~-----  109 (381)
T KOG1764|consen   36 PEASPFLVSENEVETAESNAVDTLSKFMKSHTCYDLLP-TSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKK-----  109 (381)
T ss_pred             ccccccccccccccccccchhHHHHHHHhccCcccccC-CcceeEEeeCCCcHHHHHHHHHhhceeeeccccCcc-----
Confidence            33344444444444444445557777776655444443 478999999999999999999999999999999987     


Q ss_pred             cccceeEEEehhHHHHHHHhhhhHHhhhcccccccccccccccccccchhcccCCCcchhhhhhHHhhhhhhccchhhhc
Q 013373           94 WKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEK  173 (444)
Q Consensus        94 ~~~~~~Giv~~~di~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~g~~~~~~  173 (444)
                        +++.|++++.|++..++..+...                                                       
T Consensus       110 --~~~~g~~~~~d~i~~~~~~~~~~-------------------------------------------------------  132 (381)
T KOG1764|consen  110 --QQFVGMLTITDFITVLLRYYKSK-------------------------------------------------------  132 (381)
T ss_pred             --ceeEEEEEHHHHHHHHHHhhccC-------------------------------------------------------
Confidence              79999999999999886654310                                                       


Q ss_pred             cCCCCCccccccccchhHHhhhccCCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEE
Q 013373          174 GAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKN  253 (444)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~G  253 (444)
                                  ...++...+.........++..+.....+++++.+.+..++.++...+.+++++++||.|.+.+.+.+
T Consensus       133 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~  200 (381)
T KOG1764|consen  133 ------------SSLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLY  200 (381)
T ss_pred             ------------CcHHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHHHHHHHHHhCCccceeeecccccceee
Confidence                        01122223333333344455556665555667999999999999999999999999999976789999


Q ss_pred             EEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEe
Q 013373          254 YITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVS  333 (444)
Q Consensus       254 ivt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt  333 (444)
                      ++|++.|++++..+...-++..+...++.+++++.+.  ++..+..++++.+|+++|.+++++.+||++. .|+.+|+++
T Consensus       201 ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~--~i~~i~~~~~v~~al~~m~~~~is~lpvV~~-~g~~v~~~s  277 (381)
T KOG1764|consen  201 ILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWS--NIASISEDTPVIEALKIMSERRISALPVVDE-NGKKVGNYS  277 (381)
T ss_pred             ehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhh--hheeecCCCcHHHHHHHHHhcCcCcceEEcC-CCceeccee
Confidence            9999999999998866566678889999999987554  6999999999999999999999999999999 777799999


Q ss_pred             HHHHHHHhcCCccccccccCc-HHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEE
Q 013373          334 IRDIRHLLLKPELFSNFRQLT-VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGV  412 (444)
Q Consensus       334 ~~Dll~~l~~~~~~~~~~~~~-v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGv  412 (444)
                      ..|+......... ... ..+ +.+....+      ..++.++++|.++++|.+++..|..+++||+||||++| .++|+
T Consensus       278 ~~Dv~~l~~~~~~-~~~-~~~~l~~~~~~~------~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~-~l~Gv  348 (381)
T KOG1764|consen  278 RFDVIHLAREGTY-NNL-DLSCLSEALSHR------PIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDG-VLVGV  348 (381)
T ss_pred             hhhhhhhhhcCcc-Ccc-chhHHHHHhhhc------ccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCC-cEEEE
Confidence            9999998876433 222 333 55555432      22445789999999999999999999999999999988 99999


Q ss_pred             EeHHHHHHHhHcCCCccchhhhhhhHHHhhc
Q 013373          413 ITLRDVISCFIFEPPNHLDNYFGFSVKDLLN  443 (444)
Q Consensus       413 IT~~DIl~~l~~e~~~~~~~~~~~~~~~~~~  443 (444)
                      ||++||+.+++.+|.+++.+.+++..+...|
T Consensus       349 vSLsDil~~l~~~p~~~~~~~~~~~~~~~~~  379 (381)
T KOG1764|consen  349 ISLSDILSYLVLTPSGGTPDAPSSSMSTSEN  379 (381)
T ss_pred             eeHHHHHHHHHhCccCCCCCCcCccccccCC
Confidence            9999999999999999999988877665443

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.76  E-value=9.4e-18  Score=151.35  Aligned_cols=125  Identities=27%  Similarity=0.447  Sum_probs=114.7

Q ss_pred             ccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCc
Q 013373          275 IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLT  354 (444)
Q Consensus       275 ~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~  354 (444)
                      .+...++++    +|++ +++++.+++|+.++.++|.++++++.||+|+  ++++|++|.+|+..++.+...     +..
T Consensus       168 siPk~~V~~----~~s~-~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~-----~~k  235 (294)
T COG2524         168 SIPKEKVKN----LMSK-KLITVRPDDTLREAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNL-----DAK  235 (294)
T ss_pred             ecCcchhhh----hccC-CceEecCCccHHHHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCc-----ccc
Confidence            346778899    7887 9999999999999999999999999999995  599999999999999886432     678


Q ss_pred             HHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          355 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       355 v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      |+++|.+            ++++++.|+.+.||+++|..+++.|+.|+|.+| +++|+||++|||+.++.
T Consensus       236 V~~~M~k------------~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~g-kpvGiITrTDIL~~ia~  292 (294)
T COG2524         236 VSDYMRK------------NVITINEDEDIYDAIRLMNKNNVGRLLVTDSNG-KPVGIITRTDILTRIAG  292 (294)
T ss_pred             HHHHhcc------------CCceEcCchhHHHHHHHHHhcCcceEEEEccCC-cEEEEEehHHHHHHhhc
Confidence            9999995            999999999999999999999999999999887 99999999999998875

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.71  E-value=8.6e-17  Score=145.20  Aligned_cols=125  Identities=25%  Similarity=0.425  Sum_probs=115.9

Q ss_pred             CCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccc
Q 013373          198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIA  277 (444)
Q Consensus       198 ~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~  277 (444)
                      ..+...+|.++|+    ++++++.+++|+.+|.++|.+++++..||+|++  +++|++|.+||...+.++.        .
T Consensus       167 ~siPk~~V~~~~s----~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d--k~vGiit~~dI~~aia~g~--------~  232 (294)
T COG2524         167 VSIPKEKVKNLMS----KKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD--KIVGIITLSDIAKAIANGN--------L  232 (294)
T ss_pred             eecCcchhhhhcc----CCceEecCCccHHHHHHHHHHcCccCCceecCC--ceEEEEEHHHHHHHHHcCC--------c
Confidence            3456788999999    889999999999999999999999999999984  8999999999999998873        5


Q ss_pred             cCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       278 ~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      +.+|++    +|.+ +++++.+|+.+.||+++|..++++++.|+|. +|+++|+||++|++..+.
T Consensus       233 ~~kV~~----~M~k-~vitI~eDe~i~dAir~M~~~nVGRLlV~ds-~gkpvGiITrTDIL~~ia  291 (294)
T COG2524         233 DAKVSD----YMRK-NVITINEDEDIYDAIRLMNKNNVGRLLVTDS-NGKPVGIITRTDILTRIA  291 (294)
T ss_pred             cccHHH----Hhcc-CCceEcCchhHHHHHHHHHhcCcceEEEEcc-CCcEEEEEehHHHHHHhh
Confidence            689999    8997 9999999999999999999999999999998 899999999999998764

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.64  E-value=7.1e-16  Score=141.66  Aligned_cols=128  Identities=24%  Similarity=0.438  Sum_probs=112.0

Q ss_pred             ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc---ccccC
Q 013373          277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS---NFRQL  353 (444)
Q Consensus       277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~---~~~~~  353 (444)
                      ......+    +|++ +++++++++++.+|.++|.++++..+||+|+ +.+++|+++++|+.+.... ..++   ....-
T Consensus       243 ~~Ltcad----IMSr-dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~-~~rl~GiVt~~dl~~~a~~-~p~qrlr~~~~~  315 (382)
T COG3448         243 GELTCAD----IMSR-DVVTVSTDTSIDHARKLLQEHRIKALPVLDE-HRRLVGIVTQRDLLKHARP-SPFQRLRFLRPP  315 (382)
T ss_pred             ccccHHH----hcCc-cceecCCcCChHHHHHHHHHcCccccccccc-ccceeeeeeHHHHhhccCc-chHHHhhccCCC
Confidence            4567778    8997 9999999999999999999999999999999 8999999999999885432 2222   23345


Q ss_pred             cHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          354 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       354 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      +++.+|+.            ++.++.++++..+.+-++.+.+.|++||+|++| +++||||.+|++..++.
T Consensus       316 ~vk~imt~------------~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g-~lvGIvsQtDliaal~r  373 (382)
T COG3448         316 TVKGIMTT------------PVVTVRPDTPAVELVPRLADEGLHALPVLDAAG-KLVGIVSQTDLIAALYR  373 (382)
T ss_pred             cccccccC------------cceeecCCCcHHHHHHHhhcCCcceeeEEcCCC-cEEEEeeHHHHHHHHHH
Confidence            67888875            889999999999999999999999999999998 99999999999999875

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.63  E-value=5.5e-15  Score=123.99  Aligned_cols=137  Identities=27%  Similarity=0.457  Sum_probs=113.0

Q ss_pred             eHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHH
Q 013373          256 TQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR  335 (444)
Q Consensus       256 t~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~  335 (444)
                      +.+.|+++|.++.+       .....+.    +|+. +++.+++++++.+++++|.+++++.+||++  +++++|-||..
T Consensus        49 t~k~Il~aL~e~e~-------~~ita~~----iM~s-pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~--~~k~VGsItE~  114 (187)
T COG3620          49 TVKRILEALEEAEK-------TRITAKT----IMHS-PVVSVSPDDSISDVVNLMRDKGISQLPVIE--EDKVVGSITEN  114 (187)
T ss_pred             HHHHHHHHHHHhhc-------ceEeHhh----hccC-CeeEECchhhHHHHHHHHHHcCCccCceee--CCeeeeeecHH
Confidence            44667777766532       2335556    7886 999999999999999999999999999999  69999999999


Q ss_pred             HHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeH
Q 013373          336 DIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITL  415 (444)
Q Consensus       336 Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~  415 (444)
                      ++.+++...  ...+....+.++|..            ++.+++++.++..+-+++..++  .+.|+ ++| +++||||+
T Consensus       115 ~iv~~~le~--~e~i~~~~vr~vM~e------------~fP~Vs~~~~l~vI~~LL~~~~--AVlV~-e~G-~~vGIITk  176 (187)
T COG3620         115 DIVRALLEG--MESIRSLRVREVMGE------------PFPTVSPDESLNVISQLLEEHP--AVLVV-ENG-KVVGIITK  176 (187)
T ss_pred             HHHHHHhcc--ccchhhhhHHHHhcC------------CCCcCCCCCCHHHHHHHHhhCC--eEEEE-eCC-ceEEEEeH
Confidence            999997643  234678899999984            8899999999999988888765  56667 455 99999999


Q ss_pred             HHHHHHhHc
Q 013373          416 RDVISCFIF  424 (444)
Q Consensus       416 ~DIl~~l~~  424 (444)
                      .||++.+.+
T Consensus       177 ~DI~k~~~~  185 (187)
T COG3620         177 ADIMKLLAG  185 (187)
T ss_pred             HHHHHHHhc
Confidence            999998764

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.60  E-value=3.1e-15  Score=157.43  Aligned_cols=299  Identities=16%  Similarity=0.207  Sum_probs=190.6

Q ss_pred             CCccCCCCCCCCCeEEEeCCCCHHHHHHHHHHCCCccCceecCCCCCCCCcccceeEEEehhHHHHHHHhhhhHHhhhcc
Q 013373           44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS  123 (444)
Q Consensus        44 ~~v~~~~~~~~~~~i~v~~~~si~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~~Giv~~~di~~~~l~~~~~~~~~~~  123 (444)
                      .+|++++   .++++++++++++.+|+++|.+++++.+||+|++        ++++|+|+..|+..++++..+....   
T Consensus        68 ~~V~dim---~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--------g~l~Givt~~di~~~~~~~~~~~~~---  133 (546)
T PRK14869         68 PQVRDLE---IDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE--------GKLLGLVSLSDLARAYMDILDPEIL---  133 (546)
T ss_pred             CcHHHhc---CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC--------CEEEEEEEHHHHHHHHHhhcchhhh---
Confidence            4555554   4689999999999999999999999999999986        4999999999999988765431110   


Q ss_pred             cccccccccccccccccchhcccCCCcchhhhhhHHhhhhhhccchhhhccCCCCCccccccccchhHHhhhccCCCCCC
Q 013373          124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST  203 (444)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  203 (444)
                                             ...+.++..+..+..|.-+.|+-..+...++  ..+......               
T Consensus       134 -----------------------~~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~--~~v~a~~~~---------------  173 (546)
T PRK14869        134 -----------------------SKSPTSLENIIRTLDGEVLVGAEEDKVEEGK--VVVAAMAPE---------------  173 (546)
T ss_pred             -----------------------hhcCCCHHHHHHhcCcEEEecCccccccccc--EEEEEcCHH---------------
Confidence                                   1123345555555555555442111100000  000000000               


Q ss_pred             cHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCC-----------CCcEEEEEeHHHHHHHhhcCCCCCc
Q 013373          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG-----------TPDIKNYITQSAVVQGLEGCKGRDW  272 (444)
Q Consensus       204 ~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~-----------~~~l~Givt~~di~~~l~~~~~~~~  272 (444)
                      .+.+.+.   ...++.+.....+   +..+.+.++++++|+...           ...+.++.|..|.......-.    
T Consensus       174 ~~~~~~~---~~~lvi~gdr~d~---~~~ai~~~~~~lIlt~g~~~~~~v~~la~~~~i~ii~t~~dt~~t~~~l~----  243 (546)
T PRK14869        174 SLLERIE---EGDIVIVGDREDI---QLAAIEAGVRLLIITGGAPVSEDVLELAKENGVTVISTPYDTFTTARLIN----  243 (546)
T ss_pred             HHHHhcc---CCCEEEEcCcHHH---HHHHHHcCCCEEEECCCCCCCHHHHHHHHhCCCeEEEecccHHHHHHHhh----
Confidence            1112222   1335555333333   335678889999888653           236889999999887665432    


Q ss_pred             ccccccCcccccccCCCC-CCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccc----
Q 013373          273 FDIIASQPISDLGLPFMS-SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF----  347 (444)
Q Consensus       273 ~~~~~~~~v~~l~l~im~-~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~----  347 (444)
                          ...+|.+    +|+ . ++.++++++++.++.+.|.+++++.+||+|+ +|+++|++|.+|++.....+-..    
T Consensus       244 ----~~~~V~~----iM~~~-~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~-~g~lvGiit~~dl~~~~~~~~iLVD~~  313 (546)
T PRK14869        244 ----QSIPVSY----IMTTE-DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDE-DGKVVGVISRYHLLSPVRKKVILVDHN  313 (546)
T ss_pred             ----cCCCHHH----hccCC-CcEEECCCCcHHHHHHHHHhcCCCceEEEcC-CCCEEEEEEHHHhhccccCceEEEcCc
Confidence                4578999    798 5 8999999999999999999999999999998 89999999999999865421000    


Q ss_pred             ---c---ccccCcHHHHhcccCCCCCCCCCCCCCeEe---cCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHH
Q 013373          348 ---S---NFRQLTVRDFMNAVVPTTPDSGKVNPPITC---KLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDV  418 (444)
Q Consensus       348 ---~---~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v---~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DI  418 (444)
                         .   ......+.+++..  +.... .....++.+   +...+..-+.++|.+.++...|++..  ..+.||+|-++.
T Consensus       314 e~~q~~~~~~~~~i~~iiDH--H~~~~-~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia~--~ll~gIlsDT~~  388 (546)
T PRK14869        314 EKSQAVEGIEEAEILEIIDH--HRLGD-IQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIAG--LLLAAILSDTLL  388 (546)
T ss_pred             cccccccchhhceEEEEecC--CccCC-CCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHHhcC
Confidence               0   0000000001100  00000 011233333   44667778889999999888887754  368888888887


Q ss_pred             HHH
Q 013373          419 ISC  421 (444)
Q Consensus       419 l~~  421 (444)
                      +++
T Consensus       389 f~~  391 (546)
T PRK14869        389 FKS  391 (546)
T ss_pred             ccC
Confidence            764

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.58  E-value=1.1e-14  Score=133.97  Aligned_cols=132  Identities=20%  Similarity=0.371  Sum_probs=113.6

Q ss_pred             CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013373          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  279 (444)
Q Consensus       200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~  279 (444)
                      +...+..|||+    .+++++.+++++.+|.++|.+++++.+||+|++ .+++|++|+.|+.+-..... ...+..+...
T Consensus       242 ~~~LtcadIMS----rdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~-~rl~GiVt~~dl~~~a~~~p-~qrlr~~~~~  315 (382)
T COG3448         242 MGELTCADIMS----RDVVTVSTDTSIDHARKLLQEHRIKALPVLDEH-RRLVGIVTQRDLLKHARPSP-FQRLRFLRPP  315 (382)
T ss_pred             hccccHHHhcC----ccceecCCcCChHHHHHHHHHcCcccccccccc-cceeeeeeHHHHhhccCcch-HHHhhccCCC
Confidence            44568899999    779999999999999999999999999999998 79999999999987433221 1222234566


Q ss_pred             cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (444)
Q Consensus       280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~  343 (444)
                      +++.    +|+. ++.++.++++..+.+-.+.+.+.+++||+|+ .|+++||||++|++..+.+
T Consensus       316 ~vk~----imt~-~v~tv~pdtpa~~lvp~lad~g~H~lpvld~-~g~lvGIvsQtDliaal~r  373 (382)
T COG3448         316 TVKG----IMTT-PVVTVRPDTPAVELVPRLADEGLHALPVLDA-AGKLVGIVSQTDLIAALYR  373 (382)
T ss_pred             cccc----cccC-cceeecCCCcHHHHHHHhhcCCcceeeEEcC-CCcEEEEeeHHHHHHHHHH
Confidence            7888    8997 8999999999999999999999999999999 9999999999999988753

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=5.7e-14  Score=116.33  Aligned_cols=112  Identities=19%  Similarity=0.266  Sum_probs=97.5

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      .+.++.+++++.++++.|.+++...+||+|+ +|+++|+++..|+++.+.....  .....++.++|..           
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-~g~~~G~vt~~dl~~~~~~~~~--~~~~~~v~~~~~~-----------   67 (114)
T cd04619           2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDP-HGKLAGVLTKTDVVRQMGRCGG--PGCTAPVENVMTR-----------   67 (114)
T ss_pred             ceEEECCCCcHHHHHHHHHhcCCCEEEEECC-CCCEEEEEehHHHHHHHhhcCC--CcccCCHHHHhcC-----------
Confidence            3678899999999999999999999999998 8999999999999876542110  1235679999974           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                       ++.++.+++++.++++.|.+++.+++||+|+++ +++|+||++|+++
T Consensus        68 -~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~~~Gvi~~~dl~~  113 (114)
T cd04619          68 -AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENA-RPLGVLNARDALK  113 (114)
T ss_pred             -CCeeECCCCCHHHHHHHHHHcCCCeEEEECCCC-cEEEEEEhHhhcc
Confidence             889999999999999999999999999999887 9999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.56  E-value=5.6e-14  Score=115.84  Aligned_cols=109  Identities=18%  Similarity=0.321  Sum_probs=95.3

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.++.++.++.++++.|.+++.+.++|+|+ +++++|+++..|+++...  ..   ....++.++|..           
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~--~~---~~~~~v~~~~~~-----------   64 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDE-ENKVLGQVTLSDLLEIGP--ND---YETLKVCEVYIV-----------   64 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHhhcc--cc---ccccChhheeec-----------
Confidence            4678899999999999999999999999997 789999999999987522  11   123578888874           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                       ++.++.+++++.+++++|.+++.+++||+|+++ +++|+||.+|+++
T Consensus        65 -~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~-~~~Giit~~di~~  110 (111)
T cd04603          65 -PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEG-KLVGTIYERELLR  110 (111)
T ss_pred             -CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCC-eEEEEEEhHHhhc
Confidence             778999999999999999999999999999887 9999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.56  E-value=9.5e-14  Score=146.24  Aligned_cols=195  Identities=12%  Similarity=0.153  Sum_probs=145.1

Q ss_pred             CcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCccccc------
Q 013373          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDII------  276 (444)
Q Consensus       203 ~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~------  276 (444)
                      .+++++|.    ++++++.+++++.+|+++|.+++++.+||+|++ |+++|++|..|+.+.+........+...      
T Consensus        68 ~~V~dim~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~  142 (546)
T PRK14869         68 PQVRDLEI----DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDPEILSKSPTSLEN  142 (546)
T ss_pred             CcHHHhcC----CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHH
Confidence            57999998    679999999999999999999999999999987 8999999999999876543211001000      


Q ss_pred             -----c----------cCccccccc---------CCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCC--------
Q 013373          277 -----A----------SQPISDLGL---------PFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ--------  324 (444)
Q Consensus       277 -----~----------~~~v~~l~l---------~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~--------  324 (444)
                           .          ......+.+         ..|....++.+....   +....+.+.++++++|+...        
T Consensus       143 i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~---d~~~~ai~~~~~~lIlt~g~~~~~~v~~  219 (546)
T PRK14869        143 IIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDRE---DIQLAAIEAGVRLLIITGGAPVSEDVLE  219 (546)
T ss_pred             HHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcH---HHHHHHHHcCCCEEEECCCCCCCHHHHH
Confidence                 0          000001000         023332344443222   34446788999999888641        


Q ss_pred             ---CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhc-ccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEE
Q 013373          325 ---QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN-AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIY  400 (444)
Q Consensus       325 ---~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~-~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~  400 (444)
                         +..+.++.|..|.......  .   ....+|.++|+ .            ++.++++++++.++.+.|.+++.+++|
T Consensus       220 la~~~~i~ii~t~~dt~~t~~~--l---~~~~~V~~iM~~~------------~~~~~~~~~~~~~~~~~m~~~~~~~~P  282 (546)
T PRK14869        220 LAKENGVTVISTPYDTFTTARL--I---NQSIPVSYIMTTE------------DLVTFSKDDYLEDVKEVMLKSRYRSYP  282 (546)
T ss_pred             HHHhCCCeEEEecccHHHHHHH--h---hcCCCHHHhccCC------------CcEEECCCCcHHHHHHHHHhcCCCceE
Confidence               2258899999998777552  2   13679999998 4            889999999999999999999999999


Q ss_pred             EEeCCCCeEEEEEeHHHHHHHhH
Q 013373          401 VVAGEEAEVVGVITLRDVISCFI  423 (444)
Q Consensus       401 VVd~~~~~lvGvIT~~DIl~~l~  423 (444)
                      |||++| +++|+||++|+++...
T Consensus       283 Vvd~~g-~lvGiit~~dl~~~~~  304 (546)
T PRK14869        283 VVDEDG-KVVGVISRYHLLSPVR  304 (546)
T ss_pred             EEcCCC-CEEEEEEHHHhhcccc
Confidence            999987 9999999999998543

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=4.3e-14  Score=114.04  Aligned_cols=95  Identities=19%  Similarity=0.341  Sum_probs=85.8

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.++++++++.++.+.|.+++++++||+|+++++++|++|.+|+.+.+.                              
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------------------   51 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------------------   51 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------------------
Confidence            57899999999999999999999999999962489999999999976421                              


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCC-CCeEEEEEeHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGE-EAEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~-~~~lvGvIT~~DIl~  420 (444)
                        +.++.+++++.+++++|.+++++++||+|++ | +++|+||.+||++
T Consensus        52 --~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~-~~~giit~~d~~~   97 (98)
T cd04618          52 --LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTG-TGLYILTSRRILK   97 (98)
T ss_pred             --eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCC-CceEEeehhhhhc
Confidence              4789999999999999999999999999987 6 9999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.56  E-value=7.7e-14  Score=134.59  Aligned_cols=132  Identities=17%  Similarity=0.325  Sum_probs=113.1

Q ss_pred             ccCcccccccCCCCCC-CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013373          277 ASQPISDLGLPFMSSD-EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV  355 (444)
Q Consensus       277 ~~~~v~~l~l~im~~~-~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v  355 (444)
                      ...++++    +|+++ +++++..+.++.++++.+.+++++++||++++.++++|+++.+|++..+....     ...++
T Consensus        65 ~~~~V~d----iMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~-----~~~~l  135 (292)
T PRK15094         65 ADQRVRD----IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA-----EAFSM  135 (292)
T ss_pred             CCCEEeE----EccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccC-----CcCCH
Confidence            5678999    79863 58999999999999999999999999999862378999999999987653211     12357


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCccch
Q 013373          356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLD  431 (444)
Q Consensus       356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~~~~  431 (444)
                      .++|.             ++.++++++++.++++.|.+++.+.++|+|+.| .++|+||+.||+..++++..+.|+
T Consensus       136 ~~l~r-------------~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G-~viGiVTleDIle~ivGei~de~d  197 (292)
T PRK15094        136 DKVLR-------------QAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFG-GVSGLVTIEDILELIVGEIEDEYD  197 (292)
T ss_pred             HHHcC-------------CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCC-CEEEEeEHHHHHHHHhCCCccccc
Confidence            88886             567999999999999999999999999999988 899999999999999987666555

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=1.2e-13  Score=115.47  Aligned_cols=119  Identities=20%  Similarity=0.370  Sum_probs=95.1

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.++.+++++.++++.|.+++++.+||+++ +|+++|+++.+|++.++..... . ....++.+++....      ...
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~~~Giv~~~dl~~~~~~~~~-~-~~~~~~~~~~~~~~------~~~   72 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-NGKVVDVYSRFDVINLAKEGAY-N-NLDLTVGEALERRS------QDF   72 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-CCeEEEEEeHHHHHHHHhcCcc-c-cccCCHHHHHhhcc------cCC
Confidence            5789999999999999999999999999998 8999999999999987543211 1 11234554432100      011


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  421 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~  421 (444)
                      .++.++.+++++.++++.|.+++.+++||+|+++ +++|+||++|++++
T Consensus        73 ~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~-~~~Givt~~di~~~  120 (120)
T cd04641          73 EGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENK-RVEGIISLSDILQF  120 (120)
T ss_pred             CCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCC-CEEEEEEHHHhhcC
Confidence            3678999999999999999999999999999887 99999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=2.8e-13  Score=111.98  Aligned_cols=111  Identities=23%  Similarity=0.394  Sum_probs=96.4

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCC-CeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK  371 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~-~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~  371 (444)
                      ++.++.+++++.++++.|.+++++.+||+|+ + ++++|+++.+|+++.+....  ......++.++|..          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~~G~v~~~dl~~~~~~~~--~~~~~~~v~~~~~~----------   68 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKR-RESDAYGIVTMRDILKKVVAEG--RDPDRVNVYEIMTK----------   68 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEEC-CCCcEEEEEehHHHHHHHHhCC--CCCCccCHHHHhcC----------
Confidence            5788999999999999999999999999997 6 89999999999988654211  11234679999974          


Q ss_pred             CCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          372 VNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       372 ~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                        ++.++++++++.++++.|.+++.+.+||+|+ + +++|+||+.||++
T Consensus        69 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~-~~~Gvi~~~dl~~  113 (114)
T cd04630          69 --PLISVSPDMDIKYCARLMERTNIRRAPVVEN-N-ELIGIISLTDIFL  113 (114)
T ss_pred             --CCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-C-EEEEEEEHHHhhc
Confidence              7899999999999999999999999999998 6 9999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=2.6e-13  Score=113.07  Aligned_cols=114  Identities=20%  Similarity=0.294  Sum_probs=96.9

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.++.+++++.++++.|..++.+.+||+|+ +++++|+++..|+++......   .....++.++|..          .
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-~~~~~Givt~~dl~~~~~~~~---~~~~~~~~~~~~~----------~   67 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE-DGDLVGVVSRKDLLKASIGGA---DLQKVPVGVIMTR----------M   67 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHHHHHcCC---CccCCCHHHHhCC----------C
Confidence            5789999999999999999999999999997 789999999999988764211   1235578888862          0


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCC--CeEEEEEeHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE--AEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~--~~lvGvIT~~DIl~  420 (444)
                      .++.++++++++.+++++|.+++++++||||+++  ++++|+||++||++
T Consensus        68 ~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          68 PNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            2578999999999999999999999999999872  39999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.52  E-value=8.4e-14  Score=116.92  Aligned_cols=134  Identities=24%  Similarity=0.386  Sum_probs=112.6

Q ss_pred             chhHHhhhccCCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcC
Q 013373          188 EDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC  267 (444)
Q Consensus       188 ~~~~~~l~~~~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~  267 (444)
                      ..+++.+.+.+. ...++..+|.    .|++.+.+++++.++.++|.++|++.+||++.  ++++|-+|..+|++.+.+.
T Consensus        51 k~Il~aL~e~e~-~~ita~~iM~----spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~--~k~VGsItE~~iv~~~le~  123 (187)
T COG3620          51 KRILEALEEAEK-TRITAKTIMH----SPVVSVSPDDSISDVVNLMRDKGISQLPVIEE--DKVVGSITENDIVRALLEG  123 (187)
T ss_pred             HHHHHHHHHhhc-ceEeHhhhcc----CCeeEECchhhHHHHHHHHHHcCCccCceeeC--CeeeeeecHHHHHHHHhcc
Confidence            445666665554 5678899999    88999999999999999999999999999997  6999999999999998765


Q ss_pred             CCCCcccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          268 KGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       268 ~~~~~~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      .     +.+....+++    +|.. ++.+|++++++..+..++..+  .++.|++  +|+++||||+.|+++++.
T Consensus       124 ~-----e~i~~~~vr~----vM~e-~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e--~G~~vGIITk~DI~k~~~  184 (187)
T COG3620         124 M-----ESIRSLRVRE----VMGE-PFPTVSPDESLNVISQLLEEH--PAVLVVE--NGKVVGIITKADIMKLLA  184 (187)
T ss_pred             c-----cchhhhhHHH----HhcC-CCCcCCCCCCHHHHHHHHhhC--CeEEEEe--CCceEEEEeHHHHHHHHh
Confidence            3     3346678888    8985 899999999998887777654  4577776  799999999999998865

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.52  E-value=3e-13  Score=136.59  Aligned_cols=130  Identities=18%  Similarity=0.318  Sum_probs=113.6

Q ss_pred             ccCcccccccCCCCCC-CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013373          277 ASQPISDLGLPFMSSD-EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV  355 (444)
Q Consensus       277 ~~~~v~~l~l~im~~~-~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v  355 (444)
                      .+.++++    +|+++ ++++++.++++.++++.+.+++++++||++++.++++|+++.+|++..+..       ...++
T Consensus       189 ~~~~v~d----iMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~-------~~~~l  257 (408)
T TIGR03520       189 GNTDTKQ----VMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK-------KNFDW  257 (408)
T ss_pred             CCCEeee----eCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc-------CCCCH
Confidence            5678999    89863 689999999999999999999999999998644799999999999876432       12357


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCccch
Q 013373          356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLD  431 (444)
Q Consensus       356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~~~~  431 (444)
                      .++|+             ++.++++++++.++++.|.+++.|..+|+|+.| .++|+||..||++.++++..+.++
T Consensus       258 ~~~~~-------------~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G-~~~GiVT~eDileeivgei~de~d  319 (408)
T TIGR03520       258 QSLLR-------------EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYG-GTSGLVTLEDIIEEIVGDISDEFD  319 (408)
T ss_pred             HHHcC-------------CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCC-CEEEEEEHHHHHHHHhCCCCCcCC
Confidence            78886             789999999999999999999999999999998 999999999999999987665544

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.51  E-value=3.5e-13  Score=112.58  Aligned_cols=117  Identities=15%  Similarity=0.211  Sum_probs=92.8

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCccccccc-CcccccccCCCCCCCc
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS-QPISDLGLPFMSSDEV  294 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~-~~v~~l~l~im~~~~~  294 (444)
                      +++++.+++++.+|++.|.+++++++||+|++ ++++|+++..|+..++..+........+.. .....    +|.. ++
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~   75 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDEN-GKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRS----QDFE-GV   75 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCC-CeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcc----cCCC-CC
Confidence            57899999999999999999999999999976 899999999999986643311010000000 11122    3443 67


Q ss_pred             eEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       295 ~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      .++.+++++.++++.|.+++.+.+||+|+ +|+++|+||++|+++
T Consensus        76 ~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~~~Givt~~di~~  119 (120)
T cd04641          76 RTCSPDDCLRTIFDLIVKARVHRLVVVDE-NKRVEGIISLSDILQ  119 (120)
T ss_pred             eEEcCCCcHHHHHHHHHhcCccEEEEECC-CCCEEEEEEHHHhhc
Confidence            89999999999999999999999999997 789999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.51  E-value=4e-13  Score=112.64  Aligned_cols=114  Identities=26%  Similarity=0.467  Sum_probs=97.3

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc-------ccccCcHHHHhcccCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS-------NFRQLTVRDFMNAVVPT  365 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~-------~~~~~~v~~~m~~~~~~  365 (444)
                      ++.++.+++++.++.+.|.+++++++||+++ +|+++|+++.+|+++.+.......       .....++.++|..    
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----   77 (124)
T cd04600           3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDG-DRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSP----   77 (124)
T ss_pred             CcEEeCCCCCHHHHHHHHHHcCCceeeEECC-CCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccC----
Confidence            6789999999999999999999999999997 799999999999987764321100       0124468888874    


Q ss_pred             CCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          366 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       366 ~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                              ++.++.+++++.++++.|.+++.+++||+|++| +++|+||..|+++
T Consensus        78 --------~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g-~~~Gvit~~di~~  123 (124)
T cd04600          78 --------PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDR-RLVGIVTQTDLIA  123 (124)
T ss_pred             --------CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCC-CEEEEEEhHHhhc
Confidence                    789999999999999999999999999999877 9999999999986

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.50  E-value=1.6e-13  Score=115.76  Aligned_cols=113  Identities=19%  Similarity=0.252  Sum_probs=96.2

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.++.+++++.++++.|.+++++.+||+|+ +++++|+++.+|++..+.....   ....++.++|..           
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-~~~~~Gii~~~dl~~~~~~~~~---~~~~~v~~im~~-----------   67 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDE-SGKILGMVTLGNLLSSLSSGKV---QPSDPVSKALYK-----------   67 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHHHHHHhcc---CCCCcHHHHhhc-----------
Confidence            6789999999999999999999999999997 7899999999999876543211   135689999985           


Q ss_pred             CCCeEecCCCCHHHHHHHHH---------hcCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013373          373 NPPITCKLESTLGSVIHSLA---------SKSVHRIYVVAGEEAEVVGVITLRDVISCF  422 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~---------~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l  422 (444)
                       ++.++.+++++.++.++|.         +.+.+++||+|++| +++||||.+||++++
T Consensus        68 -~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~Givt~~Dl~~~~  124 (124)
T cd04608          68 -QFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQE-KPIGIVTKIDLLSYI  124 (124)
T ss_pred             -cceecCCCCCHHHHHhhcccCCceEEEecccccccccccccc-ceEEEEehhHhhhhC
Confidence             8899999999999999653         34678889998877 999999999999864

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.50  E-value=6.6e-13  Score=109.53  Aligned_cols=110  Identities=28%  Similarity=0.460  Sum_probs=95.8

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ...++.+++++.++++.|.+.+.+.++|+++ +++++|+++.+|+++.+.....    ...++.++|..           
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~~~----~~~~v~~~~~~-----------   66 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDE-NGRLLGTVTDGDIRRALLKGLS----LDDPVSEVMNR-----------   66 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECC-CCCEEEEEEcHHHHHHHhcCCC----cCCCHHHhhcC-----------
Confidence            3577899999999999999999999999997 7999999999999876543211    23578999974           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                       ++.++.+++++.++++.|.+++.+++||+|+++ +++|+||.+||+.
T Consensus        67 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvit~~di~~  112 (113)
T cd04607          67 -NPITAKVGSSREEILALMRERSIRHLPILDEEG-RVVGLATLDDLLS  112 (113)
T ss_pred             -CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCC-CEEEEEEhHHhcc
Confidence             788999999999999999999999999999887 9999999999974

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=8e-13  Score=108.61  Aligned_cols=111  Identities=27%  Similarity=0.432  Sum_probs=96.2

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.+++++.++.++++.|.+++++.+||+++ +++++|+++..|+++.+.....  .....++.++|..           
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~Giv~~~~l~~~~~~~~~--~~~~~~~~~~~~~-----------   67 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD-GGRLVGIFSERDIVRKVALRGA--SALDTPVSEIMTR-----------   67 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEehHHHHHHHhhcCC--CccccCHHHhcCC-----------
Confidence            5778899999999999999999999999997 7899999999999987653211  1124578999874           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                       ++.++.+++++.++++.|.+.+.+++||+++ + +++|+||..||++
T Consensus        68 -~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~-~~~Gvit~~di~~  112 (113)
T cd04623          68 -NVITVTPDDTVDEAMALMTERRFRHLPVVDG-G-KLVGIVSIGDVVK  112 (113)
T ss_pred             -CcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-C-EEEEEEEHHHhhc
Confidence             7899999999999999999999999999998 6 9999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.49  E-value=7.2e-13  Score=109.66  Aligned_cols=111  Identities=20%  Similarity=0.314  Sum_probs=96.2

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.++.+++++.++.+.|.+.+++.+||+|+ +++++|+++.+|+++.+.....   ....++.++|..           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~---~~~~~~~~~~~~-----------   66 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDR-DGGVVGIITLPDLLRALEADEA---GEPSAVDEVATP-----------   66 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC-CCCEEEEEEHHHHHHHHhcccc---cccccHHHhccC-----------
Confidence            4678899999999999999999999999997 7999999999999987643211   123458888874           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCC--CCeEEEEEeHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGE--EAEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~--~~~lvGvIT~~DIl~  420 (444)
                       ++.++.+++++.++++.|.+++.+++||+|++  + +++|+||.+||++
T Consensus        67 -~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~-~~~Gvit~~di~~  114 (115)
T cd04593          67 -PLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPG-QVLGLLTRENVLL  114 (115)
T ss_pred             -CceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCC-eEEEEEEhHHhhc
Confidence             78999999999999999999999999999987  6 9999999999986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.49  E-value=6e-13  Score=136.00  Aligned_cols=121  Identities=21%  Similarity=0.297  Sum_probs=106.5

Q ss_pred             cCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHH
Q 013373          278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRD  357 (444)
Q Consensus       278 ~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~  357 (444)
                      ..++.+    +|.. +++++.+++++.++++.|.+++++.+||+|+ +++++|+||.+|+...  .       ...++.+
T Consensus        88 ~VKv~~----iMi~-~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~-~gklvGIVT~rDL~~~--~-------~~~~V~d  152 (479)
T PRK07807         88 WVKSRD----LVFD-TPVTLSPDDTVGDALALLPKRAHGAVVVVDE-EGRPVGVVTEADCAGV--D-------RFTQVRD  152 (479)
T ss_pred             hccccc----cccc-CCeEECCCCCHHHHHHHHHhcCCceEEEECC-CCeEEEEEeHHHHhcC--c-------cCCCHHH
Confidence            345666    6775 8999999999999999999999999999997 8999999999999543  1       1247999


Q ss_pred             HhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCC
Q 013373          358 FMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP  426 (444)
Q Consensus       358 ~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~  426 (444)
                      +|..            +++++++++++.+++++|.+++++++||+|+++ +++|+||++||++.....|
T Consensus       153 iMt~------------~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g-~lvGIIT~~DIl~~~~~~~  208 (479)
T PRK07807        153 VMST------------DLVTLPAGTDPREAFDLLEAARVKLAPVVDADG-RLVGVLTRTGALRATIYTP  208 (479)
T ss_pred             hccC------------CceEECCCCcHHHHHHHHHhcCCCEEEEEcCCC-eEEEEEEHHHHHHHhhCCc
Confidence            9984            899999999999999999999999999999887 9999999999999887654

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=3.4e-13  Score=113.73  Aligned_cols=123  Identities=42%  Similarity=0.668  Sum_probs=92.6

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCC--CCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP--DSG  370 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~--~~~  370 (444)
                      .+.++++++++.++++.|.+++++.+||+|+ +++++|+++..|+++........   ...+...+++. ..+..  ...
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~-~~~~~Giv~~~dl~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~   76 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDE-KGKLIGNISASDLKGLLLSPDDL---LLYRTITFKEL-SEKFTDSDGV   76 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECC-CCcEEEEEEHHHhhhhhcCcchh---hcccchhhhhh-hhhccccccc
Confidence            5788999999999999999999999999998 79999999999998876432110   01111100000 00000  000


Q ss_pred             CCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373          371 KVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  421 (444)
Q Consensus       371 ~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~  421 (444)
                      ...++.++++++++.++++.|.+++.+++||+|+++ +++|+||..||+++
T Consensus        77 ~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~-~~~Giit~~dil~~  126 (126)
T cd04642          77 KSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEG-KPIGVITLTDIISI  126 (126)
T ss_pred             ccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCC-CEEEEEEHHHHhcC
Confidence            124789999999999999999999999999999887 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=7.4e-13  Score=110.64  Aligned_cols=115  Identities=23%  Similarity=0.354  Sum_probs=98.0

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc------ccccCcHHHHhcccCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS------NFRQLTVRDFMNAVVPTT  366 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~------~~~~~~v~~~m~~~~~~~  366 (444)
                      ++.++.+++++.++.+.|.+.+++.+||+++ +|+++|+++..|+++.+.......      .....++.+++..     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----   75 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNE-DGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKT-----   75 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECC-CCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCC-----
Confidence            5788999999999999999999999999997 799999999999988764311100      1135578888874     


Q ss_pred             CCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373          367 PDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  421 (444)
Q Consensus       367 ~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~  421 (444)
                             ++.++.+++++.++++.|.+.+.+.+||+|+++ +++|+||..|++++
T Consensus        76 -------~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvit~~dl~~~  122 (122)
T cd04803          76 -------DVLTVTPDTPLREAAEIMVENKIGCLPVVDDKG-TLVGIITRSDFLRL  122 (122)
T ss_pred             -------CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCC-CEEEEEEHHHhhcC
Confidence                   789999999999999999999999999999887 99999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=8.6e-13  Score=108.67  Aligned_cols=111  Identities=23%  Similarity=0.394  Sum_probs=96.5

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.++.+++++.++++.|.+.+.+.+||+|+ +++++|+++.+|+++.+.....   +...++.++|..           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~dl~~~~~~~~~---~~~~~i~~~~~~-----------   66 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDD-KKRLVGIITRYDVLSYALESEE---LKDAKVREVMNS-----------   66 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcC-CCCEEEEEEHHHHHHhhhhhhh---hcCCcHHHhccC-----------
Confidence            3578899999999999999999999999997 7899999999999876433222   234578899874           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                       ++.++.+++++.++++.|.+++.+.+||+|++| +++|+||..||++
T Consensus        67 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g-~~~Gvvt~~dl~~  112 (113)
T cd04615          67 -PVITIDANDSIAKARWLMSNNNISRLPVLDDKG-KVGGIVTEDDILR  112 (113)
T ss_pred             -CceEECCCCcHHHHHHHHHHcCCCeeeEECCCC-eEEEEEEHHHhhc
Confidence             789999999999999999999999999999887 9999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=7.8e-13  Score=111.02  Aligned_cols=115  Identities=29%  Similarity=0.400  Sum_probs=97.7

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCC-CeEEEEEeHHHHHHHhcCCcccc--------ccccCcHHHHhcccC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFS--------NFRQLTVRDFMNAVV  363 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~-~~lvGiIt~~Dll~~l~~~~~~~--------~~~~~~v~~~m~~~~  363 (444)
                      ++.++.++.++.+++++|.+.+...+||+++ + ++++|+++..|++.++.....+.        .....++.+++..  
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~-~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   78 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDE-GTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTR--   78 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeC-CCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcC--
Confidence            5778899999999999999999999999997 5 99999999999998765322111        1123578888874  


Q ss_pred             CCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373          364 PTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  421 (444)
Q Consensus       364 ~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~  421 (444)
                                ++.++++++++.++++.|.+.+.+.+||+|+++ +++|+||..||+++
T Consensus        79 ----------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~-~~~Gvit~~di~~~  125 (125)
T cd04631          79 ----------NVITITPDDSIKDAAELMLEKRVGGLPVVDDDG-KLVGIVTERDLLKA  125 (125)
T ss_pred             ----------CceEeCCCCcHHHHHHHHHHcCCceEEEEcCCC-cEEEEEEHHHhhcC
Confidence                      789999999999999999999999999999877 99999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=7.1e-13  Score=108.80  Aligned_cols=109  Identities=23%  Similarity=0.312  Sum_probs=95.9

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.++.+++++.++++.|.+.+...+||+++ +++++|+++..|+.+.+....     ...++.++|..           
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~-----~~~~v~~~~~~-----------   64 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDG-DGHLVGLLTRDDLIRALAEGG-----PDAPVRGVMRR-----------   64 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECC-CCcEEEEeeHHHHHHHHHhcC-----CCCcHHHHhcC-----------
Confidence            5678899999999999999889999999997 799999999999988764321     23478899874           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                       ++.++.+++++.++++.|.+++..++||+|+++ +++|+||.+|+.+
T Consensus        65 -~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-~~~G~it~~dl~~  110 (111)
T cd04639          65 -DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSG-RLVGLVTLENVGE  110 (111)
T ss_pred             -CCcEECCCCcHHHHHHHHHhcCCceeeEEcCCC-CEEEEEEHHHhhc
Confidence             789999999999999999999999999999877 9999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=5.2e-13  Score=107.70  Aligned_cols=94  Identities=15%  Similarity=0.227  Sum_probs=84.6

Q ss_pred             ceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCceE
Q 013373          217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT  296 (444)
Q Consensus       217 ~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~~  296 (444)
                      ++++++++++.+|.+.|.+++++++||+|+++++++|++|..|+.+.+                         .   +.+
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~-------------------------~---~~~   54 (98)
T cd04618           3 LVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL-------------------------R---LVS   54 (98)
T ss_pred             EEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe-------------------------e---eEE
Confidence            789999999999999999999999999997437899999999996521                         1   678


Q ss_pred             ecCCCcHHHHHHHHHHcCCCeEeEEeCCC-CeEEEEEeHHHHHH
Q 013373          297 IQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRH  339 (444)
Q Consensus       297 v~~~~sl~ea~~~m~~~~~~~lpVvd~~~-~~lvGiIt~~Dll~  339 (444)
                      +.+++++.+|++.|.+++++++||+++ + |+++|++|.+|+++
T Consensus        55 v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~~giit~~d~~~   97 (98)
T cd04618          55 IHPERSLFDAALLLLKNKIHRLPVIDP-STGTGLYILTSRRILK   97 (98)
T ss_pred             eCCCCcHHHHHHHHHHCCCCEeeEEEC-CCCCceEEeehhhhhc
Confidence            999999999999999999999999997 6 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.47  E-value=8.6e-13  Score=107.97  Aligned_cols=105  Identities=22%  Similarity=0.382  Sum_probs=94.7

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.++.+++++.++.+.|.+++.+.+||+|+ +++++|+++..|++...         ...++.++|..           
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~---------~~~~v~~~~~~-----------   61 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE-KNKVVGIVTSKDVAGKD---------PDTTIEKVMTK-----------   61 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECC-CCeEEEEecHHHHhccc---------ccccHHHHhcC-----------
Confidence            6789999999999999999999999999997 89999999999997531         13478999974           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                       ++.++.+++++.++++.|.+++.+.+||+|+++ +++|+||..|+++
T Consensus        62 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~G~it~~di~~  107 (108)
T cd04596          62 -NPITVNPKTSVASVAHMMIWEGIEMLPVVDDNK-KLLGIISRQDVLK  107 (108)
T ss_pred             -CCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCC-CEEEEEEHHHhhc
Confidence             789999999999999999999999999999887 9999999999985

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.47  E-value=7.2e-13  Score=109.15  Aligned_cols=108  Identities=11%  Similarity=0.226  Sum_probs=93.3

Q ss_pred             ceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCceE
Q 013373          217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT  296 (444)
Q Consensus       217 ~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~~  296 (444)
                      ++++.+++++.+|++.|.+++.+.+||+|++ ++++|+++..|+.+.....        ....++.+    +|.. ++.+
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~--------~~~~~v~~----~~~~-~~~~   68 (111)
T cd04603           3 TVSVNCENPLREAIKMINELGARAVVVVDEE-NKVLGQVTLSDLLEIGPND--------YETLKVCE----VYIV-PVPI   68 (111)
T ss_pred             eEEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHhhcccc--------ccccChhh----eeec-CCcE
Confidence            6788999999999999999999999999976 8999999999998742111        12356888    6765 7889


Q ss_pred             ecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          297 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       297 v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      +.+++++.+++++|.+++.+.+||+|+ +++++|+||.+|+++
T Consensus        69 v~~~~~l~~al~~m~~~~~~~lpVvd~-~~~~~Giit~~di~~  110 (111)
T cd04603          69 VYCDSKVTDLLRIFRETEPPVVAVVDK-EGKLVGTIYERELLR  110 (111)
T ss_pred             ECCCCcHHHHHHHHHHcCCCeEEEEcC-CCeEEEEEEhHHhhc
Confidence            999999999999999999999999997 799999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.47  E-value=1.3e-12  Score=129.85  Aligned_cols=199  Identities=18%  Similarity=0.282  Sum_probs=151.4

Q ss_pred             CCCeEEEeCCCCHHHHHHHHHHCCCccCceecCCCCCCCCcccceeEEEehhHHHHHHHhhhhHHhhhcccccccccccc
Q 013373           54 GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVG  133 (444)
Q Consensus        54 ~~~~i~v~~~~si~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~~Giv~~~di~~~~l~~~~~~~~~~~~~~~~~~~~~  133 (444)
                      .++.+.+.+..++.++...|.+++++.+||.|.+.       ++...++|..-|+.++......-               
T Consensus       161 ~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~-------~~v~~ilt~~rIl~~l~~~~~~~---------------  218 (381)
T KOG1764|consen  161 KPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPET-------GEVLYILTQRRILKFLWLNGRLL---------------  218 (381)
T ss_pred             CCCceeecCcHHHHHHHHHHHhCCccceeeecccc-------cceeeehhHHHHHHHHHHhhccc---------------
Confidence            33449999999999999999999999999999666       69999999999999874332100               


Q ss_pred             cccccccchhcccCCCcchhhhhhHHhhhhhhccchhhhccCCCCCccccccccchhHHhhhccCCCCCCcHHHhhhhcC
Q 013373          134 TGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYR  213 (444)
Q Consensus       134 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~di~~~~~  213 (444)
                                                                           .         .+.+...++.|+-. ..
T Consensus       219 -----------------------------------------------------~---------~~~~l~~s~~dl~i-g~  235 (381)
T KOG1764|consen  219 -----------------------------------------------------P---------LPSLLSKSLSDLGI-GT  235 (381)
T ss_pred             -----------------------------------------------------c---------cHHHhhCCHHHhCc-ch
Confidence                                                                 0         01112333444433 23


Q ss_pred             CCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCccccc-ccCcccccccCCCCCC
Q 013373          214 WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDII-ASQPISDLGLPFMSSD  292 (444)
Q Consensus       214 ~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~-~~~~v~~l~l~im~~~  292 (444)
                      |..+..+..++++.+|++.|..++++.+||+|.. |+.+|+++..|+........ ...+... ........   -...+
T Consensus       236 ~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~-g~~v~~~s~~Dv~~l~~~~~-~~~~~~~~l~~~~~~~---~~~~~  310 (381)
T KOG1764|consen  236 WSNIASISEDTPVIEALKIMSERRISALPVVDEN-GKKVGNYSRFDVIHLAREGT-YNNLDLSCLSEALSHR---PIRFE  310 (381)
T ss_pred             hhhheeecCCCcHHHHHHHHHhcCcCcceEEcCC-CceecceehhhhhhhhhcCc-cCccchhHHHHHhhhc---ccccC
Confidence            4568999999999999999999999999999987 78899999999988776542 1111111 00011111   11224


Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~  343 (444)
                      .+++|.+++++.+++..|..+++++++|+|+ +|.++|++|.+|++.++..
T Consensus       311 ~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~-~~~l~GvvSLsDil~~l~~  360 (381)
T KOG1764|consen  311 GVVTCRPTSTLAEVIDKLVAHRVHRLWVVDE-DGVLVGVISLSDILSYLVL  360 (381)
T ss_pred             ccEEEeecchHHHHHHHHHhcCceEEEEEcC-CCcEEEEeeHHHHHHHHHh
Confidence            6899999999999999999999999999998 8999999999999998763

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=1e-12  Score=108.63  Aligned_cols=112  Identities=25%  Similarity=0.376  Sum_probs=94.5

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccccc---ccCcHHHHhcccCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNF---RQLTVRDFMNAVVPTTPDS  369 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~---~~~~v~~~m~~~~~~~~~~  369 (444)
                      ++.++.+++++.++++.|.+++++.+||+|+ +++++|+++.+|+++.+...... ..   ...++.++|..        
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~~-~~~~~~~~~v~~~~~~--------   71 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK-EGKYVGTISLTDILWKLKGLENL-DLERLVDLKVIDVMNT--------   71 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECC-CCcEEEEEeHHHHHHHhhccCch-hHHHHhCCcHHHHhcC--------
Confidence            5788999999999999999999999999997 78999999999998876532110 11   14578888874        


Q ss_pred             CCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373          370 GKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  421 (444)
Q Consensus       370 ~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~  421 (444)
                          ++.++.+++++.++++.|.+.+  .+||+|+++ +++|+||..|++++
T Consensus        72 ----~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~-~~~Gvit~~dil~~  116 (116)
T cd04643          72 ----DVPVIIDDADIEEILHLLIDQP--FLPVVDDDG-IFIGIITRREILKA  116 (116)
T ss_pred             ----CCceecCCCCHHHHHHHHhcCC--ceeEEeCCC-eEEEEEEHHHhhcC
Confidence                7899999999999999998865  599999887 99999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=6.6e-13  Score=111.41  Aligned_cols=113  Identities=18%  Similarity=0.261  Sum_probs=90.2

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCC-CeEEEEEeHHHHHHHhcCCcccc---cc---ccCcHHHHhcccCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFS---NF---RQLTVRDFMNAVVPT  365 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~-~~lvGiIt~~Dll~~l~~~~~~~---~~---~~~~v~~~m~~~~~~  365 (444)
                      ++.++.+++++.++++.|.+++++++||+|+ + ++++|+++.+|+++++.......   ..   ....+.++|.     
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   75 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEE-ESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGT-----   75 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeC-CCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCc-----
Confidence            5788999999999999999999999999997 6 89999999999988653211000   00   0001112333     


Q ss_pred             CCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHH
Q 013373          366 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVI  419 (444)
Q Consensus       366 ~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl  419 (444)
                             .++.++++++++.++++.|.+++.+++||+|+++ +++|+||.+||-
T Consensus        76 -------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~~vGiit~~di~  121 (123)
T cd04627          76 -------SDVISINGDQPLIDALHLMHNEGISSVAVVDNQG-NLIGNISVTDVR  121 (123)
T ss_pred             -------CCceEeCCCCCHHHHHHHHHHcCCceEEEECCCC-cEEEEEeHHHhh
Confidence                   3788999999999999999999999999999887 999999999984

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.47  E-value=1.1e-12  Score=106.66  Aligned_cols=104  Identities=19%  Similarity=0.296  Sum_probs=92.2

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.+++++.++.++++.|.+++.+.+||+|+ +|+++|+++..|++....          .++.++|..           
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~-~g~~~Giv~~~dl~~~~~----------~~~~~~~~~-----------   59 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA-DGQPLGFVTRREAARASG----------GCCGDHAEP-----------   59 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECC-CCCEEEEEeHHHHHHhcc----------cchhhhccc-----------
Confidence            5678899999999999999999999999987 799999999999986521          247788763           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                       .+.++.+++++.++++.|.+++...+||+|+++ +++|+||++|+++
T Consensus        60 -~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvi~~~~l~~  105 (106)
T cd04582          60 -FKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDG-RYVGEVTQRSIAD  105 (106)
T ss_pred             -CCEEECCCCCHHHHHHHHHHCCCCeeeEECCCC-cEEEEEEHHHhhc
Confidence             668899999999999999999999999999887 9999999999986

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.47  E-value=1.7e-12  Score=106.28  Aligned_cols=107  Identities=29%  Similarity=0.445  Sum_probs=95.1

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+++..|+++.+...       ..++.++|..           
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~-------~~~~~~~~~~-----------   63 (110)
T cd04605           3 PVVTISEDASIKEAAKLMIEENINHLPVVDE-DGRLVGIVTSWDISKAVARD-------KKSVEDIMTR-----------   63 (110)
T ss_pred             CCEEECCCCCHHHHHHHHHhCCCceEEEECC-CCcEEEEEeHHHHHHHHhhC-------ccCHHHhcCC-----------
Confidence            6788999999999999999999999999997 79999999999998765431       1258888863           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                       ++.++.+++++.++++.|.+++.+.+||+++++ +++|+||+.||++
T Consensus        64 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~G~v~~~di~~  109 (110)
T cd04605          64 -NVITATPDEPIDVAARKMERHNISALPVVDAEN-RVIGIITSEDISK  109 (110)
T ss_pred             -CCeEECCCCcHHHHHHHHHHhCCCEEeEECCCC-cEEEEEEHHHhhh
Confidence             788999999999999999999999999999887 9999999999975

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.47  E-value=6.1e-13  Score=109.91  Aligned_cols=111  Identities=23%  Similarity=0.328  Sum_probs=93.9

Q ss_pred             CceEecCCCcHHHHHHHHHHcC-CCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNN-IGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK  371 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~-~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~  371 (444)
                      ++.+++++.++.++++.|.+++ .+.+||+|+ +++++|+++.+|+++.....     ....++.++|...         
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~-----~~~~~v~~~~~~~---------   66 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN-EGRYVGIISLADLRAIPTSQ-----WAQTTVIQVMTPA---------   66 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcC-CCcEEEEEEHHHHHHHHHhh-----ccccchhhhhccc---------
Confidence            5778999999999999997775 889999997 79999999999998875421     1245788888631         


Q ss_pred             CCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          372 VNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       372 ~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                       .++.++.+++++.++++.|.+++.+++||+|+++ +++|+||.+||++
T Consensus        67 -~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~-~~~Gvl~~~di~~  113 (114)
T cd04801          67 -AKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSG-QVIGLITEADLLR  113 (114)
T ss_pred             -ccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCC-cEEEEEeccceec
Confidence             1357899999999999999999999999999877 9999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=1.4e-12  Score=111.70  Aligned_cols=113  Identities=22%  Similarity=0.345  Sum_probs=96.2

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc--------------------cccc
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS--------------------NFRQ  352 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~--------------------~~~~  352 (444)
                      ++.++++++++.++++.|.+++.+.+||+|+ +++++|+++..|+++.+.......                    ....
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD-NGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVP   80 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECC-CCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhccccccccccccc
Confidence            5678999999999999999999999999997 799999999999998764211100                    0124


Q ss_pred             CcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          353 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       353 ~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                      .++.++|..            ++..+.+++++.++++.|.+++.+++||+++ + +++|+||.+||++
T Consensus        81 ~~v~~~~~~------------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~-~~~Gvit~~di~~  134 (135)
T cd04621          81 LVAEDIMTE------------EIITVSPNDDVVDAAKLMLEANISGLPVVDN-D-NIVGVITKTDICR  134 (135)
T ss_pred             ccHHHhcCC------------CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-C-EEEEEEEHHHHhh
Confidence            578899874            7889999999999999999999999999997 6 9999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=1.5e-12  Score=106.98  Aligned_cols=109  Identities=25%  Similarity=0.370  Sum_probs=95.1

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.++++++++.++++.|.+++++.+||+|+ +|+++|+++..|++.+.....    ....++.++|..           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~~----~~~~~v~~~~~~-----------   65 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN-EEKLKGVVTFTDILDLDLFES----FLEKKVFNIVSQ-----------   65 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcC-CCCEEEEEehHHhHHHHhhcc----cccCcHHHHhcC-----------
Confidence            5778999999999999999999999999997 799999999999987643211    124578898874           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                       ++.++.+++++.++++.|.+++..++||+|+ + +++|+||..||++
T Consensus        66 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~G~it~~di~~  110 (111)
T cd04626          66 -DVFYVNEEDTIDEALDIMREKQIGRLPVVDD-N-KLIGVVRTKDILD  110 (111)
T ss_pred             -CcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-C-EEEEEEEhHHhcc
Confidence             7889999999999999999999999999998 6 9999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.46  E-value=6.2e-13  Score=130.91  Aligned_cols=121  Identities=17%  Similarity=0.255  Sum_probs=106.2

Q ss_pred             cCcccccccCCCCCCC--ceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013373          278 SQPISDLGLPFMSSDE--VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV  355 (444)
Q Consensus       278 ~~~v~~l~l~im~~~~--~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v  355 (444)
                      ..+|++    +|.+ +  +.++++++++.++.+.|.+++...+||+|+ +|+++|+|+..|+.+.+....    ....++
T Consensus       196 ~~~V~~----im~~-~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~-~g~~iG~vt~~dl~~~~~~~~----~~~~~v  265 (321)
T PRK11543        196 LNKVHH----LMRR-DDAIPQVALTASVMDAMLELSRTGLGLVAVCDA-QQQVQGVFTDGDLRRWLVGGG----ALTTPV  265 (321)
T ss_pred             HhHHHH----Hhcc-CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEecHHHHHHHHhCCC----CcCCcH
Confidence            567888    7876 5  999999999999999999999999999998 899999999999988664311    124578


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373          356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  421 (444)
Q Consensus       356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~  421 (444)
                      .++|..            ++.++.+++++.++++.|.+++..++||||+++ +++|+||+.||++.
T Consensus       266 ~~im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~lvGvIt~~di~~~  318 (321)
T PRK11543        266 NEAMTR------------GGTTLQAQSRAIDAKEILMKRKITAAPVVDENG-KLTGAINLQDFYQA  318 (321)
T ss_pred             HHhcCC------------CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEHHHHHhc
Confidence            999984            789999999999999999999999999999887 99999999999864

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.46  E-value=7.9e-13  Score=130.40  Aligned_cols=123  Identities=20%  Similarity=0.353  Sum_probs=104.2

Q ss_pred             ccCcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013373          277 ASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV  355 (444)
Q Consensus       277 ~~~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v  355 (444)
                      ...++++    +|.+ +++.++++++++.++++.|.+++.+.+||+|+ +|+++|++|.+|+++.+....   .+...++
T Consensus       200 ~~~~V~d----im~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~-~g~lvGivt~~Dl~~~~~~~~---~~~~~~v  271 (326)
T PRK10892        200 LLLRVSD----IMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD-NMKIEGIFTDGDLRRVFDMGI---DLRQASI  271 (326)
T ss_pred             ccCcHHH----HhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC-CCcEEEEEecHHHHHHHhcCC---CcccCCH
Confidence            3446777    6863 27899999999999999999999888888887 899999999999987654211   1235689


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373          356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  421 (444)
Q Consensus       356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~  421 (444)
                      .++|..            ++.++.+++++.++++.|.+++++++||+++ + +++|+||++||++.
T Consensus       272 ~~im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~-~-~lvGiit~~dil~~  323 (326)
T PRK10892        272 ADVMTP------------GGIRVRPGILAVDALNLMQSRHITSVLVADG-D-HLLGVLHMHDLLRA  323 (326)
T ss_pred             HHhcCC------------CCEEECCCCCHHHHHHHHHHCCCcEEEEeeC-C-EEEEEEEhHHhHhc
Confidence            999984            8899999999999999999999999999985 4 99999999999974

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=1.1e-12  Score=108.15  Aligned_cols=112  Identities=26%  Similarity=0.373  Sum_probs=96.0

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.++.+++++.++.+.|.+++.+.+||+++ +++++|+++..|+++.+.... +......++.++|..           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~-~~~~~~~~v~~~~~~-----------   68 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDD-NGNLVGFLSEQDCLKQLLESS-YHCDGVATVRDIMTT-----------   68 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECC-CCeEEEEeehHHHHHHhhhhh-hccCCCccHHHHhcc-----------
Confidence            5678999999999999999989999999997 789999999999987654311 111124578999874           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                       ++.++.+++++.++++.|.+++.+++||+|+ + +++|+||..||++
T Consensus        69 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~Gvit~~di~~  113 (114)
T cd04629          69 -EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-G-KLVGQISRRDVLR  113 (114)
T ss_pred             -CceEECCCCcHHHHHHHHHHhCCCccCEEEC-C-EEEEEEEHHHHhc
Confidence             7889999999999999999999999999998 6 9999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=2e-12  Score=106.25  Aligned_cols=110  Identities=25%  Similarity=0.387  Sum_probs=96.6

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.++.+++++.++.+.|.+.+++.+||+++ +++++|+++..|+++.+....    ....++.++|..           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~~l~~~~~~~~----~~~~~v~~~~~~-----------   65 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP-DERPIGIVTERDIVRAVAAGI----DLDTPVSEIMTR-----------   65 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECC-CCCEEEEeeHHHHHHHHhccC----CCccCHHHhccC-----------
Confidence            5678899999999999999999999999997 799999999999988765422    124578888874           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                       ++.++.+++++.++++.|.+++...+||+|+++ +++|++|+.|+++
T Consensus        66 -~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g-~~~Gilt~~dl~~  111 (112)
T cd04624          66 -DLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGG-ELVGVISIRDLVR  111 (112)
T ss_pred             -CCEEECCCCcHHHHHHHHHHcCccEEEEEcCCC-cEEEEEEHHHhcc
Confidence             788999999999999999999999999999887 9999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.46  E-value=1e-12  Score=131.21  Aligned_cols=182  Identities=15%  Similarity=0.244  Sum_probs=137.7

Q ss_pred             eEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCC---------------------ccccc
Q 013373          218 LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD---------------------WFDII  276 (444)
Q Consensus       218 v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~---------------------~~~~~  276 (444)
                      +-......+.....++..++-++.-+..++  .++-.+..+.+.+...++....                     ....+
T Consensus        69 ~~~~~~gdlFg~~~l~~~~~~~~~~~aeed--sl~y~lp~s~F~ql~~~n~~f~~ff~~~~akR~~~~~~~~~eq~~~e~  146 (610)
T COG2905          69 LDRLAAGDLFGFSSLFTELNKQRYMAAEED--SLCYLLPKSVFMQLMEENPEFADFFLRSLAKRLRDIADRLAEQGESEF  146 (610)
T ss_pred             eeeeccCccccchhhcccCCCcceeEeecc--ceEEecCHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhccchH
Confidence            333344445555556666666666666654  5777776665655544432111                     00112


Q ss_pred             ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013373          277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVR  356 (444)
Q Consensus       277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~  356 (444)
                      ..+.|.+    +++. ++++|++..++.+|..+|.++|++.+.++++ ++...||||.+|+........   .....+|.
T Consensus       147 ~~trv~~----~~~~-~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~-~~~~~GIvT~~dl~~~v~~~g---~~~~~~V~  217 (610)
T COG2905         147 ILTRVGE----VKTL-PAVTVSPQASIQDAARKMKDEGVSSLVVLDD-SGPLLGIVTRKDLRSRVIADG---RSKTQKVS  217 (610)
T ss_pred             HHHHHHH----HhcC-CCcccCccCcHHHHHHHHHhcCCCeEEEEcC-CCCccceeehHHHHHHHHhcC---CCcccchh
Confidence            2335555    5665 8999999999999999999999999999998 899999999999988765322   23467999


Q ss_pred             HHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          357 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       357 ~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      ++|+.            |+++++.++.+.+|+-+|.+++++++||.++  |+++||||..||++.+.+
T Consensus       218 evmT~------------p~~svd~~~~~feAml~m~r~~I~hl~V~e~--gq~~Gilt~~dIl~l~s~  271 (610)
T COG2905         218 EVMTS------------PVISVDRGDFLFEAMLMMLRNRIKHLPVTED--GQPLGILTLTDILRLFSQ  271 (610)
T ss_pred             hhhcc------------CceeecCcchHHHHHHHHHHhCCceeeeecC--CeeeEEeeHHHHHHhhCC
Confidence            99995            9999999999999999999999999999976  599999999999998875

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=1.4e-12  Score=107.84  Aligned_cols=111  Identities=19%  Similarity=0.419  Sum_probs=95.5

Q ss_pred             ceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCceE
Q 013373          217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT  296 (444)
Q Consensus       217 ~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~~  296 (444)
                      +..+.+++++.+|++.|.+++...+||+|++ +++.|+++..|+.+.+......     ....++.+    +|.. ++.+
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~-----~~~~~v~~----~~~~-~~~~   71 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGP-----GCTAPVEN----VMTR-AVVS   71 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCC-----cccCCHHH----HhcC-CCee
Confidence            6788999999999999999999999999987 8999999999998866431111     13457888    6765 7899


Q ss_pred             ecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          297 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       297 v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      +.+++++.++++.|.+++...+||+|+ +++++|+|+.+|++.
T Consensus        72 v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~Gvi~~~dl~~  113 (114)
T cd04619          72 CRPGDLLHDVWQVMKQRGLKNIPVVDE-NARPLGVLNARDALK  113 (114)
T ss_pred             ECCCCCHHHHHHHHHHcCCCeEEEECC-CCcEEEEEEhHhhcc
Confidence            999999999999999999999999997 789999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.45  E-value=2.3e-12  Score=105.19  Aligned_cols=106  Identities=23%  Similarity=0.391  Sum_probs=94.4

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.++.++.++.++++.|.++++..+||+++ +++++|+++..|++.....        ..++.++|..           
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~--------~~~v~~~~~~-----------   62 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDK-DNKLLGIVSLESLEQAYKE--------AKSLEDIMLE-----------   62 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcC-CCcEEEEEEHHHHHHHhhc--------CCcHhHhhcC-----------
Confidence            5678899999999999999999999999997 7899999999999876421        2468888874           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                       .+.++++++++.++++.|.+.+.+++||+|++| +++|+||..|+++
T Consensus        63 -~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g-~~~Gvit~~~l~~  108 (109)
T cd04583          63 -DVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDG-KLVGLITRSSLVD  108 (109)
T ss_pred             -CceEECCCCcHHHHHHHHHHcCCceeeEECCCC-eEEEEEehHHhhc
Confidence             788999999999999999999999999999887 9999999999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.45  E-value=2.2e-12  Score=105.83  Aligned_cols=108  Identities=21%  Similarity=0.495  Sum_probs=94.1

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCC-CeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK  371 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~-~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~  371 (444)
                      ++.++.++.++.++.+.|.+++++.+||+++ + ++++|+++..|+++......     ...++.+++.           
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~-~~~~~~G~v~~~~l~~~~~~~~-----~~~~~~~~~~-----------   64 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDG-DLDNIIGVVHVKDLLRALAEGE-----EDLDLRDLLR-----------   64 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECC-CCceEEEEEEHHHHHHHHHcCC-----CcCCHHHHhc-----------
Confidence            5788999999999999999999999999997 6 89999999999998765311     1145777664           


Q ss_pred             CCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          372 VNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       372 ~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                        ++.++.+++++.++++.|.+++.+++||+|+++ +++|+||++|+++
T Consensus        65 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvit~~di~~  110 (111)
T cd04590          65 --PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYG-GTAGLVTLEDILE  110 (111)
T ss_pred             --CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCC-CEEEEeEHHHhhc
Confidence              678999999999999999999999999999887 9999999999975

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.45  E-value=1.8e-12  Score=106.60  Aligned_cols=111  Identities=25%  Similarity=0.515  Sum_probs=97.1

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.++.+++++.++.+.|.+.+++.+||+|+ +++++|+++..|+.+++.+...   ....++.++|..           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~G~v~~~~l~~~~~~~~~---~~~~~v~~~~~~-----------   66 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDD-DGRLVGIVSLDDIREILFDPSL---YDLVVASDIMTK-----------   66 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECC-CCCEEEEEEHHHHHHHHhcccc---cccEEHHHhccC-----------
Confidence            5788999999999999999999999999997 7899999999999887643221   123579999974           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeC-CCCeEEEEEeHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAG-EEAEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~-~~~~lvGvIT~~DIl~  420 (444)
                       ++.++.+++++.++++.|.+.+.+++||+|+ .+ +++|++|..|++.
T Consensus        67 -~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~-~~~Gvvt~~di~~  113 (114)
T cd04613          67 -PPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPG-KLLGILSRSDLLS  113 (114)
T ss_pred             -CCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCC-EEEEEEEhHHhhc
Confidence             7899999999999999999999999999987 77 9999999999985

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.45  E-value=1.8e-12  Score=106.74  Aligned_cols=111  Identities=21%  Similarity=0.319  Sum_probs=96.7

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.++++++++.++++.|.+.+.+.+||+++ +++++|+++..++++.+.....   ....++.++|..           
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~~i~~~~~~~~~---~~~~~v~~~~~~-----------   67 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDE-DGRLVGIFTDGDLRRALEKGLD---ILTLPVADVMTR-----------   67 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcC-CCCEEEEechHHHHHHHhccCc---cccCCHHHhhcc-----------
Confidence            5678899999999999998888999999997 7899999999999988753221   223479999984           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                       ++.++.+++++.++++.|..++.+.+||+|+++ +++|+||..||++
T Consensus        68 -~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-~~iG~it~~di~~  113 (114)
T cd04604          68 -NPKTIDPDALAAEALELMEENKITALPVVDDNG-RPVGVLHIHDLLR  113 (114)
T ss_pred             -CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCC-CEEEEEEHHHhhc
Confidence             778999999999999999999999999999877 9999999999986

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=1.4e-12  Score=104.79  Aligned_cols=94  Identities=18%  Similarity=0.366  Sum_probs=85.6

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.++.+++++.++++.|.+++++.+||+|+ +++++|+++.+|+++..                               
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~-------------------------------   49 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDD-DGKLSGIITERDLIAKS-------------------------------   49 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEEHHHHhcCC-------------------------------
Confidence            5788999999999999999999999999997 79999999999997531                               


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                       .+.++.+++++.++++.|.+++.+++||+|+++ +++|+||++||++
T Consensus        50 -~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~-~~~Giit~~di~~   95 (96)
T cd04614          50 -EVVTATKRTTVSECAQKMKRNRIEQIPIINGND-KLIGLLRDHDLLK   95 (96)
T ss_pred             -CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCC-cEEEEEEHHHhhc
Confidence             147899999999999999999999999999877 9999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=2.2e-12  Score=108.89  Aligned_cols=115  Identities=24%  Similarity=0.453  Sum_probs=95.1

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcc----------ccccccCcHHHHhccc
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL----------FSNFRQLTVRDFMNAV  362 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~----------~~~~~~~~v~~~m~~~  362 (444)
                      ++.++.+++++.++++.|.+.+.+.+||+++ +++++|+++..|+..++.....          .......++.++|.. 
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   79 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDD-NGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS-   79 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECC-CCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC-
Confidence            5678899999999999999999999999998 7999999999999876532110          001123578888874 


Q ss_pred             CCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEe--CCCCeEEEEEeHHHHHHH
Q 013373          363 VPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVA--GEEAEVVGVITLRDVISC  421 (444)
Q Consensus       363 ~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd--~~~~~lvGvIT~~DIl~~  421 (444)
                                 +++++.+++++.++++.|.+++.+.+||++  +++ +++|+||++||+++
T Consensus        80 -----------~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~-~~~Gvit~~di~~~  128 (128)
T cd04632          80 -----------PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDT-KVVGILTKKDVLRA  128 (128)
T ss_pred             -----------CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCC-cEEEEEEhHhhhcC
Confidence                       789999999999999999999999999985  355 99999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=2.7e-12  Score=106.11  Aligned_cols=110  Identities=16%  Similarity=0.331  Sum_probs=91.7

Q ss_pred             CceEecCCCcHHHHHHHHHHcC-CCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNN-IGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK  371 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~-~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~  371 (444)
                      ++.++.++.++.++++.|.+++ ...++|++  +++++|+++..|+++.+....   .....++.++|..          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~G~v~~~dl~~~~~~~~---~~~~~~i~~~~~~----------   66 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE--KGRLLGIFTERDIVRLTAIGK---DLSDLPIGEVMTQ----------   66 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC--CCcEEEEEeHHHHHHHHhcCC---CccccCHHHhcCC----------
Confidence            4678899999999999998888 56677776  589999999999998654211   1123578899874          


Q ss_pred             CCCCeEecCC--CCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          372 VNPPITCKLE--STLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       372 ~~~~~~v~~~--~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                        ++.++.++  +++.++++.|.+++.+.+||+|++| +++|+||++|+++
T Consensus        67 --~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~-~~~Gvit~~dl~~  114 (115)
T cd04620          67 --PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQG-QLIGLVTAESIRQ  114 (115)
T ss_pred             --CcEEEecccccCHHHHHHHHHHhCCceEEEEcCCC-CEEEEEEhHHhhc
Confidence              77888877  7899999999999999999999887 9999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=2.4e-12  Score=109.46  Aligned_cols=114  Identities=25%  Similarity=0.440  Sum_probs=95.8

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc-----------------ccccCcH
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS-----------------NFRQLTV  355 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~-----------------~~~~~~v  355 (444)
                      ++.++.+++++.++++.|.+++++++||+|+ +++++|+++..|+++++.......                 .+...++
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN-EGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKV   80 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECC-CCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCH
Confidence            5788999999999999999999999999998 789999999999988765321100                 0111267


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373          356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  421 (444)
Q Consensus       356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~  421 (444)
                      .++|..            ++..+.+++++.++++.|.+.+.+++||+|+ + +++|+||..|++++
T Consensus        81 ~~~~~~------------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~-~~iGvit~~dl~~~  132 (132)
T cd04636          81 EEIMTK------------KVITVDEDTTIEDVARIMSKKNIKRLPVVDD-G-KLVGIISRGDIIRS  132 (132)
T ss_pred             HHhccC------------CceEECCCCcHHHHHHHHHHCCCCeeEEEEC-C-EEEEEEEHHHhhcC
Confidence            788763            7899999999999999999999999999998 6 99999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.43  E-value=5.1e-12  Score=103.66  Aligned_cols=109  Identities=28%  Similarity=0.438  Sum_probs=94.8

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.+++.+.++.++.+.|.+++++.+||+++  ++++|+++..|+++.+.....   ....++.++|..           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~---~~~~~i~~~~~~-----------   65 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGL---DPDTPVSEVMTA-----------   65 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCC---CccCCHHHHhCC-----------
Confidence            5778999999999999999999999999984  899999999999876543222   123578999874           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                       ++.++.+++++.++++.|.+++.+++||+++ + +++|++|.+||++
T Consensus        66 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~Giit~~di~~  110 (111)
T cd04800          66 -PPITIPPDATVFEALLLMLERGIHHLPVVDD-G-RLVGVISATDLLR  110 (111)
T ss_pred             -CCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-C-EEEEEEEHHHhhc
Confidence             7899999999999999999999999999998 6 9999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=2.4e-12  Score=107.58  Aligned_cols=114  Identities=19%  Similarity=0.371  Sum_probs=95.9

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc------ccccCcHHHHhcccCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS------NFRQLTVRDFMNAVVPTT  366 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~------~~~~~~v~~~m~~~~~~~  366 (444)
                      ++.++.+++++.++++.|.+.+++.+||+|+ +++++|+++..|+++.........      .....++.++|..     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   75 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK-AGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMST-----   75 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECC-CCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcC-----
Confidence            5788999999999999999999999999997 799999999999987532110000      0134578888863     


Q ss_pred             CCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          367 PDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       367 ~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                             ++.++.+++++.++++.|.+++.+++||+|++| +++|++|..|+++
T Consensus        76 -------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g-~~~Gvit~~dl~~  121 (122)
T cd04635          76 -------PVYSVTPDDSIATAVELMLEHDIGRLPVVNEKD-QLVGIVDRHDVLK  121 (122)
T ss_pred             -------CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCC-cEEEEEEhHHhhc
Confidence                   789999999999999999999999999999887 9999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.43  E-value=1.8e-12  Score=110.65  Aligned_cols=113  Identities=27%  Similarity=0.424  Sum_probs=95.7

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcc-------------------ccccccC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL-------------------FSNFRQL  353 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~-------------------~~~~~~~  353 (444)
                      ++.++.+++++.++++.|.+++++.+||+|+ +++++|+++..|+.+.+.....                   +......
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
T cd04586           3 DVVTVSPETSVAEAARLMLDNHISGLPVVDD-DGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGR   81 (135)
T ss_pred             CCEEeCCCCCHHHHHHHHHHcCCCCceEECC-CCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCC
Confidence            6788999999999999999999999999997 7899999999999876532100                   0011245


Q ss_pred             cHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          354 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       354 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                      ++.++|..            ++.++.+++++.++++.|.+.+.+++||+| +| +++|+||+.|+++
T Consensus        82 ~v~~~~~~------------~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g-~~~Gvit~~di~~  134 (135)
T cd04586          82 KVADVMTR------------PVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GG-RLVGIVSRADLLR  134 (135)
T ss_pred             CHHHHhCC------------CceEeCCCCcHHHHHHHHHHcCCCccCEec-CC-EEEEEEEhHhhhc
Confidence            78888874            789999999999999999999999999999 66 9999999999986

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=2.6e-12  Score=107.04  Aligned_cols=112  Identities=18%  Similarity=0.369  Sum_probs=94.8

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCC-CCc
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSS-DEV  294 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~-~~~  294 (444)
                      ++.++.+++++.+|++.|.++++..+||+|.+ ++++|+++..|+.+.......      ....++.+    +|.. .++
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~------~~~~~~~~----~~~~~~~~   70 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGAD------LQKVPVGV----IMTRMPNI   70 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCC------ccCCCHHH----HhCCCCCc
Confidence            57899999999999999999999999999986 799999999999887653211      13455667    5652 368


Q ss_pred             eEecCCCcHHHHHHHHHHcCCCeEeEEeCCC---CeEEEEEeHHHHHH
Q 013373          295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQ---KKIVGNVSIRDIRH  339 (444)
Q Consensus       295 ~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~---~~lvGiIt~~Dll~  339 (444)
                      .++.+++++.+++++|.+++++.+||+|+ +   ++++|+||.+|+++
T Consensus        71 ~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          71 TTTTPEESVLEAAKKLIEHQVDSLPVVEK-VDEGLEVIGRITKTNITK  117 (118)
T ss_pred             EEECCCCcHHHHHHHHHHcCCCEeeEEeC-CCccceEEEEEEhhheec
Confidence            89999999999999999999999999997 4   69999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.42  E-value=6.4e-12  Score=102.90  Aligned_cols=108  Identities=31%  Similarity=0.453  Sum_probs=94.9

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.++.+++++.++++.|.+++++.+||+++  ++++|+++..|+++......     ...++.+++..           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~-----~~~~v~~~~~~-----------   63 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGL-----ELAKVKDVMTK-----------   63 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccc-----cccCHHHHhcC-----------
Confidence            5788999999999999999999999999994  89999999999998754311     12578888874           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                       ++.++.+++++.++++.|.+.+.+.+||+++++ +++|+||..|+++
T Consensus        64 -~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~G~i~~~dl~~  109 (110)
T cd04588          64 -DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEG-RPVGIITRTDILR  109 (110)
T ss_pred             -CceEECCCCCHHHHHHHHHhcCCCEEEEECCCC-CEEEEEEhHHhhc
Confidence             889999999999999999999999999999887 9999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=6.8e-12  Score=103.09  Aligned_cols=110  Identities=24%  Similarity=0.468  Sum_probs=92.3

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      .+.++.+++++.++.+.|.+++.+.++|.+  +++++|+++..|+++.+....  ......++.++|..           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~G~v~~~dl~~~~~~~~--~~~~~~~v~~~~~~-----------   66 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME--RGELVGLLTFREVLQAMAQHG--AGVLDTTVRAIMNP-----------   66 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee--CCEEEEEEEHHHHHHHHHhcC--CchhcCCHHHHhCC-----------
Confidence            467889999999999999888887777665  689999999999987764210  01224579999974           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                       .+.++.+++++.++++.|.+++..++||+++ + +++|+||.+||++
T Consensus        67 -~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~-~-~~~Gvvt~~dl~~  111 (112)
T cd04625          67 -EPIVASPDDSIDEVRRLMVERHLRYLPVLDG-G-TLLGVISFHDVAK  111 (112)
T ss_pred             -CCeEECCCCCHHHHHHHHHHcCCCeeeEEEC-C-EEEEEEEHHHhhc
Confidence             6789999999999999999999999999985 5 9999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.42  E-value=7.4e-12  Score=102.59  Aligned_cols=107  Identities=27%  Similarity=0.444  Sum_probs=94.7

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.++..+.++.++.+.|.+++.+.+||+|+  ++++|+++..|+.+.+.. .    ....++.++|..           
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~-~----~~~~~~~~~~~~-----------   64 (110)
T cd04595           3 PVKTVRPEATIEEARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRH-G----LGHAPVKDYMST-----------   64 (110)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhc-c----cccCcHHHHhcC-----------
Confidence            6789999999999999999999999999995  899999999999887632 1    135689999974           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                       ++.++.+++++.+++++|.+++.+.+||++ ++ +++|+||..|+++
T Consensus        65 -~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~-~~~Gvvt~~di~~  109 (110)
T cd04595          65 -DVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DG-RLVGIVTRTDLLR  109 (110)
T ss_pred             -CCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CC-EEEEEEEhHHhhc
Confidence             789999999999999999999999999999 56 9999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.42  E-value=4.2e-12  Score=104.46  Aligned_cols=111  Identities=19%  Similarity=0.308  Sum_probs=94.3

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.++.+++++.++++.|.+++.+.+||++  +++++|+++.+|++..+......  ....++.++|..           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~G~v~~~dl~~~~~~~~~~--~~~~~v~~i~~~-----------   66 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMD--GNKLVGIFTSKDIALRVVAQGLD--PESTLVERVMTP-----------   66 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEE--CCEEEEEEEhHHHHHHHHhcCCC--cCcCCHHHhcCC-----------
Confidence            577899999999999999999999999998  48999999999998544322211  112578999874           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                       ++.++.+++++.++++.|.+++.+++||+++++ +++|+||..||+.
T Consensus        67 -~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~-~~~Gvvs~~dl~~  112 (113)
T cd04587          67 -NPVCATSDTPVLEALHLMVQGKFRHLPVVDKSG-QVVGLLDVTKLTH  112 (113)
T ss_pred             -CCeEEcCCCCHHHHHHHHHHcCCCcccEECCCC-CEEEEEEHHHhcc
Confidence             788999999999999999999999999999877 9999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.41  E-value=3.6e-12  Score=130.21  Aligned_cols=121  Identities=18%  Similarity=0.281  Sum_probs=104.3

Q ss_pred             cCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHH
Q 013373          278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRD  357 (444)
Q Consensus       278 ~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~  357 (444)
                      ..++.+    +|.. +++++.+++++.++++.|.+++++.+||+|  +++++|+||.+|+...    .     ...++.+
T Consensus        87 ~VKv~e----im~~-~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD--~gklvGIVT~rDL~~~----~-----~~~~V~d  150 (475)
T TIGR01303        87 FVKSRD----LVLD-TPITLAPHDTVSDAMALIHKRAHGAAVVIL--EDRPVGLVTDSDLLGV----D-----RFTQVRD  150 (475)
T ss_pred             hcchhh----cccc-CCeEECCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEEEHHHhhcC----C-----CCCCHHH
Confidence            345556    5665 789999999999999999999999999988  4789999999998533    1     1347999


Q ss_pred             HhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCC
Q 013373          358 FMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPP  427 (444)
Q Consensus       358 ~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~  427 (444)
                      +|+.            +++++++++++.+++++|.+++++++||||+++ +++|+||.+||++.....|.
T Consensus       151 IMt~------------~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g-~LvGIIT~~DLl~~~~~~~~  207 (475)
T TIGR01303       151 IMST------------DLVTAPADTEPRKAFDLLEHAPRDVAPLVDADG-TLAGILTRTGALRATIYTPA  207 (475)
T ss_pred             HccC------------CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEHHHHHHHHhCCch
Confidence            9985            899999999999999999999999999999887 99999999999998876543

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.41  E-value=1.8e-12  Score=132.90  Aligned_cols=179  Identities=16%  Similarity=0.247  Sum_probs=144.5

Q ss_pred             hhccCCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHh-----CCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCC
Q 013373          194 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSK-----YRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK  268 (444)
Q Consensus       194 l~~~~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~-----~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~  268 (444)
                      +.....+...+++++|.    .++++++++.++.+|++.|.+     ++...++|+|++ ++++|+++.+|++..   . 
T Consensus       122 i~~ll~~~e~tvg~iMt----~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~-~~l~GvV~l~dLl~a---~-  192 (449)
T TIGR00400       122 INLLLSYSDDSAGRIMT----IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNES-KHLKGVLSIRDLILA---K-  192 (449)
T ss_pred             HHHHhCCCcchHHHhCc----CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCC-CeEEEEEEHHHHhcC---C-
Confidence            44445677889999998    679999999999999999975     456789999876 799999999998642   1 


Q ss_pred             CCCcccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc
Q 013373          269 GRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS  348 (444)
Q Consensus       269 ~~~~~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~  348 (444)
                              .+.++++    +|.+ ++.++++++++.++++.|.+++...+||+|+ +|+++|+||.+|+++.+..     
T Consensus       193 --------~~~~v~~----im~~-~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~-~g~lvGiIt~~Dil~~l~~-----  253 (449)
T TIGR00400       193 --------PEEILSS----IMRS-SVFSIVGVNDQEEVARLIQKYDFLAVPVVDN-EGRLVGIVTVDDIIDVIQS-----  253 (449)
T ss_pred             --------CCCcHHH----HhCC-CCeeECCCCCHHHHHHHHHHcCCCEEeEEcC-CCeEEEEEEHHHHHHHHHh-----
Confidence                    2357888    7876 7889999999999999999999999999998 8999999999999988763     


Q ss_pred             ccccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013373          349 NFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF  422 (444)
Q Consensus       349 ~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l  422 (444)
                          ...+++|+.            ..++..+++.+.+++..|.+++...++|.     .+.|++| ..++..+
T Consensus       254 ----~~~ed~~~~------------~gv~~~~~~~l~~~~~~~~~~R~~wL~v~-----~~~~~~t-~~ii~~f  305 (449)
T TIGR00400       254 ----EATEDFYMI------------AAVKPLDDSYFDTSILVMAKNRIIWLLVL-----LVSSTFT-ATIISNY  305 (449)
T ss_pred             ----hhHHHHHHh------------cCCCCCcchhhhchHHHHHHhccchHHHH-----HHHHHHH-HHHHHHH
Confidence                134788874            44555567889999999999988877764     4556666 5555544

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=3.7e-12  Score=106.80  Aligned_cols=117  Identities=23%  Similarity=0.410  Sum_probs=92.2

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCc-cccc--ccCcccccccCCCCCC
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW-FDII--ASQPISDLGLPFMSSD  292 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~-~~~~--~~~~v~~l~l~im~~~  292 (444)
                      ++..+.+++++.+|++.|.+++++++||+|.+++++.|+++..|+++++..+..... ....  ....+.+    +|.. 
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-   76 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLT----IGTS-   76 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcc----cCcC-
Confidence            578899999999999999998999999999743689999999999987654311000 0000  0011123    4554 


Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHH
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR  338 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll  338 (444)
                      ++.++.+++++.+|++.|.+++.+.+||+|+ +++++|+||.+|+.
T Consensus        77 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~vGiit~~di~  121 (123)
T cd04627          77 DVISINGDQPLIDALHLMHNEGISSVAVVDN-QGNLIGNISVTDVR  121 (123)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCceEEEECC-CCcEEEEEeHHHhh
Confidence            7899999999999999999999999999997 78999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=2.3e-12  Score=108.72  Aligned_cols=112  Identities=21%  Similarity=0.284  Sum_probs=91.1

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHh-----cCCccccccccCcHHHHhcccCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL-----LKPELFSNFRQLTVRDFMNAVVPTTP  367 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l-----~~~~~~~~~~~~~v~~~m~~~~~~~~  367 (444)
                      ++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+++..|+++..     ...  .......++.++|+.      
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~--~~~~~~~~v~~im~~------   72 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS-DDNFIGVITAVDLLGEEPIKRIQEG--GISRSELTVADVMTP------   72 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEHHHHhhChhhHHHHHc--CCCchheEHHHhcCc------
Confidence            4678999999999999999999999999997 78999999999998621     110  001234579999974      


Q ss_pred             CCCCCCCCe--Ee----cCCCCHHHHHHHHHhcCCCEEEEEeCC-CCeEEEEEeHHHHHH
Q 013373          368 DSGKVNPPI--TC----KLESTLGSVIHSLASKSVHRIYVVAGE-EAEVVGVITLRDVIS  420 (444)
Q Consensus       368 ~~~~~~~~~--~v----~~~~tl~~a~~~m~~~~~~~l~VVd~~-~~~lvGvIT~~DIl~  420 (444)
                            +..  .+    .+++++.++++.|.+++.+++||+|++ + +++|+||++||++
T Consensus        73 ------~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~-~~~G~it~~di~~  125 (126)
T cd04640          73 ------KEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHH-QIRGIISTSDIAR  125 (126)
T ss_pred             ------hhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCC-EEEEEEeHHHHhh
Confidence                  332  23    368999999999999999999999986 6 9999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.40  E-value=9.4e-12  Score=101.93  Aligned_cols=109  Identities=25%  Similarity=0.424  Sum_probs=95.2

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.++.+++++.++++.|.+++.+.+||+++  ++++|+++..|+++......  .  ...++.++|..           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~--~--~~~~v~~~~~~-----------   64 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGP--D--LQTPVGEVMSS-----------   64 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCC--C--CCcCHHHhcCC-----------
Confidence            4678899999999999999989999999984  89999999999988764321  0  34678999874           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                       +++++.+++++.++++.|.+.+.+.+||+|++| +++|+||.+||++
T Consensus        65 -~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~-~~~Gvi~~~di~~  110 (111)
T cd04611          65 -PLLTVPADTSLYDARQLMREHGIRHLVVVDDDG-ELLGLLSQTDLLQ  110 (111)
T ss_pred             -CceEECCCCCHHHHHHHHHHcCCeEEEEECCCC-cEEEEEEhHHhhc
Confidence             789999999999999999999999999999887 9999999999985

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.40  E-value=4e-12  Score=125.37  Aligned_cols=124  Identities=17%  Similarity=0.241  Sum_probs=105.7

Q ss_pred             CCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCc
Q 013373          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP  280 (444)
Q Consensus       201 ~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~  280 (444)
                      ...+|+++|...  .+++++.+++++.+|++.|.+++...+||+|++ |+++|++|..|+.+.+....      .+...+
T Consensus       200 ~~~~V~dim~~~--~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~-g~lvGivt~~Dl~~~~~~~~------~~~~~~  270 (326)
T PRK10892        200 LLLRVSDIMHTG--DEIPHVSKTASLRDALLEITRKNLGMTVICDDN-MKIEGIFTDGDLRRVFDMGI------DLRQAS  270 (326)
T ss_pred             ccCcHHHHhCCC--CCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEecHHHHHHHhcCC------CcccCC
Confidence            456799999821  279999999999999999999888888888876 89999999999987654321      113467


Q ss_pred             ccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHH
Q 013373          281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL  340 (444)
Q Consensus       281 v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~  340 (444)
                      +.+    +|++ ++.++.+++++.++++.|.+++++.+||++  +++++|+||.+|+++.
T Consensus       271 v~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~--~~~lvGiit~~dil~~  323 (326)
T PRK10892        271 IAD----VMTP-GGIRVRPGILAVDALNLMQSRHITSVLVAD--GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             HHH----hcCC-CCEEECCCCCHHHHHHHHHHCCCcEEEEee--CCEEEEEEEhHHhHhc
Confidence            888    7886 899999999999999999999999999998  5899999999999875

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=5.3e-12  Score=105.26  Aligned_cols=113  Identities=28%  Similarity=0.438  Sum_probs=95.3

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcc-------ccccccCcHHHHhcccCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL-------FSNFRQLTVRDFMNAVVPT  365 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~-------~~~~~~~~v~~~m~~~~~~  365 (444)
                      ++.++.+++++.++.+.|.+++.+.+||++  +++++|+++..|+++.+.....       ...+...++.++|..    
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~--~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----   75 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIE--GGKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTR----   75 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEE--CCEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccC----
Confidence            577899999999999999999999999999  4899999999999876542110       001234578888864    


Q ss_pred             CCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373          366 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  421 (444)
Q Consensus       366 ~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~  421 (444)
                              ++.++.+++++.++++.|.+.+.+++||+|+ + +++|+||..|++++
T Consensus        76 --------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~Gvi~~~dl~~~  121 (121)
T cd04633          76 --------PVITIEPDTSVSDVASLMLENNIGGLPVVDD-G-KLVGIVTRTDILRY  121 (121)
T ss_pred             --------CceEECCCCcHHHHHHHHHHcCCCcccEEEC-C-EEEEEEEHHHhhcC
Confidence                    7899999999999999999999999999998 6 99999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.40  E-value=1e-11  Score=101.94  Aligned_cols=110  Identities=24%  Similarity=0.347  Sum_probs=94.3

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++++++++.++.++++.|.+++...++|+|+  ++++|+++..|++........   ....++.++|..           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~---~~~~~i~~~~~~-----------   65 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGL---PSSTPVGEIATF-----------   65 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCC---CCCCCHHHHhCC-----------
Confidence            4678899999999999999999999999985  789999999999887542111   124578899974           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  421 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~  421 (444)
                       ++..+++++++.++++.|.+++.+.+||+|+ + +++|+||..|++++
T Consensus        66 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~G~it~~dl~~~  111 (111)
T cd04589          66 -PLITVDPDDFLFNALLLMTRHRIHRVVVREG-G-EVVGVLEQTDLLSF  111 (111)
T ss_pred             -CcEEECCCCcHHHHHHHHHHhCccEEEEeeC-C-EEEEEEEhHHhhcC
Confidence             7889999999999999999999999999986 5 99999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.39  E-value=4.8e-12  Score=124.59  Aligned_cols=123  Identities=20%  Similarity=0.319  Sum_probs=105.9

Q ss_pred             CCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcc
Q 013373          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI  281 (444)
Q Consensus       202 ~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v  281 (444)
                      ..+|+++|...  .++.++.+++++.+|++.|.+++...+||+|++ |+++|+++..|+.+.+.....       ...++
T Consensus       196 ~~~V~~im~~~--~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt~~dl~~~~~~~~~-------~~~~v  265 (321)
T PRK11543        196 LNKVHHLMRRD--DAIPQVALTASVMDAMLELSRTGLGLVAVCDAQ-QQVQGVFTDGDLRRWLVGGGA-------LTTPV  265 (321)
T ss_pred             HhHHHHHhccC--CCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEecHHHHHHHHhCCCC-------cCCcH
Confidence            46799999821  138999999999999999999899999999987 899999999999887653211       24567


Q ss_pred             cccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHH
Q 013373          282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL  340 (444)
Q Consensus       282 ~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~  340 (444)
                      .+    +|.+ ++.++.+++++.++++.|.+++...+||+|+ +++++|+||.+|++++
T Consensus       266 ~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~lvGvIt~~di~~~  318 (321)
T PRK11543        266 NE----AMTR-GGTTLQAQSRAIDAKEILMKRKITAAPVVDE-NGKLTGAINLQDFYQA  318 (321)
T ss_pred             HH----hcCC-CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHhc
Confidence            88    7876 8899999999999999999999999999997 7899999999999865

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.39  E-value=6.9e-12  Score=128.34  Aligned_cols=115  Identities=29%  Similarity=0.438  Sum_probs=101.5

Q ss_pred             CCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCC---CeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCC
Q 013373          288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ---KKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVP  364 (444)
Q Consensus       288 im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~---~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~  364 (444)
                      .|.. +++++.+++++.++++.|.+++++++||+|+ +   ++++|+|+.+|++....        ...++.++|..   
T Consensus        85 ~~~~-~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~-~~~~~~lvGIVt~rDL~~~~~--------~~~~V~dvm~~---  151 (450)
T TIGR01302        85 GIIS-DPVTISPETTVADVLELMERKGISGIPVVED-GDMTGKLVGIITKRDIRFVKD--------KGKPVSEVMTR---  151 (450)
T ss_pred             ceec-CceEeCCCCCHHHHHHHHHHcCCCEEEEEeC-CCCCCeEEEEEEHHHHhhhhc--------CCCCHHHhhCC---
Confidence            4554 7899999999999999999999999999997 5   79999999999975421        24579999972   


Q ss_pred             CCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          365 TTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       365 ~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                              .+++++++++++.++++.|.+++.+.+||+|+++ +++|+||+.||++.+..
T Consensus       152 --------~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G-~lvGiVT~~DIl~~~~~  202 (450)
T TIGR01302       152 --------EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNG-ELVGLITMKDIVKRRKF  202 (450)
T ss_pred             --------CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCC-cEEEEEEhHHhhhcccC
Confidence                    2789999999999999999999999999999998 99999999999998743

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.39  E-value=1.1e-11  Score=101.62  Aligned_cols=110  Identities=25%  Similarity=0.441  Sum_probs=94.7

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.++.+++++.++++.|.+.+.+.+||+++  ++++|+++..|+.+......    ....++.++|..           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~----~~~~~~~~~~~~-----------   64 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGR----EATVLVGDVMTR-----------   64 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCc----ccccCHHHhccC-----------
Confidence            5788999999999999999999999999995  89999999999987654311    112367788864           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  421 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~  421 (444)
                       ++.++.+++++.++++.|.+++.+.+||+|+++ +++|+||..||+++
T Consensus        65 -~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~G~it~~di~~~  111 (111)
T cd04612          65 -DPVTASPDETLRDALKRMAERDIGRLPVVDDSG-RLVGIVSRSDLLRA  111 (111)
T ss_pred             -CCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCC-CEEEEEEHHHhhhC
Confidence             789999999999999999999999999999877 99999999999863

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.39  E-value=8.3e-12  Score=103.90  Aligned_cols=113  Identities=27%  Similarity=0.430  Sum_probs=95.2

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc-------ccccCcHHHHhcccCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS-------NFRQLTVRDFMNAVVPT  365 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~-------~~~~~~v~~~m~~~~~~  365 (444)
                      ++.++.+++++.++++.|.+.++..+||+|+  ++++|+++..|++..........       .....++.++|..    
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----   75 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTR----   75 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccC----
Confidence            5678999999999999999999999999994  89999999999988754211000       0123567888864    


Q ss_pred             CCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          366 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       366 ~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                              ++.++.+++++.+++..|.+.+.+++||+|++| +++|+||..||++
T Consensus        76 --------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvvt~~di~~  121 (122)
T cd04585          76 --------DPITVSPDASVEEAAELMLERKISGLPVVDDQG-RLVGIITESDLFR  121 (122)
T ss_pred             --------CCeEeCCCCcHHHHHHHHHHcCCCceeEECCCC-cEEEEEEHHHhhh
Confidence                    789999999999999999999999999999877 9999999999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.39  E-value=5.1e-12  Score=133.81  Aligned_cols=128  Identities=15%  Similarity=0.258  Sum_probs=109.3

Q ss_pred             cccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013373          276 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV  355 (444)
Q Consensus       276 ~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v  355 (444)
                      +...+++|    +|++ ++.++++++++.++.+.|.+++.+.+||+|+ +++++|+++.+|+.+.+.....   ....++
T Consensus       444 L~~~~V~d----im~~-~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~-~g~lvGiVt~~dL~~~l~~~~~---~~~~~v  514 (574)
T PRK01862        444 LRTTQMRE----LIQP-AQTVVPPTASVADMTRVFLEYPVKYLYVVDD-DGRFRGAVALKDITSDLLDKRD---TTDKTA  514 (574)
T ss_pred             HhhCcHHH----HhcC-CCceeCCCCCHHHHHHHHHhCCCceEEEEcC-CCeEEEEEEHHHHHHHhhcccc---cccchH
Confidence            35568888    7886 7889999999999999999999999999998 8999999999999886532211   123578


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCC-CeEEEEEeHHHHHHHhHc
Q 013373          356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE-AEVVGVITLRDVISCFIF  424 (444)
Q Consensus       356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~-~~lvGvIT~~DIl~~l~~  424 (444)
                      .++|+.            ++.++++++++.++++.|.+++.+++||+|+++ ++++|+||++|+++.+..
T Consensus       515 ~dim~~------------~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~  572 (574)
T PRK01862        515 ADYAHT------------PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR  572 (574)
T ss_pred             HHhccC------------CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence            999974            788999999999999999999999999999863 289999999999998764

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.38  E-value=4.7e-12  Score=103.72  Aligned_cols=103  Identities=26%  Similarity=0.376  Sum_probs=89.3

Q ss_pred             ecCCCcHHHHHHHHHHcC-----CCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013373          297 IQSNELILEAFKRMKDNN-----IGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK  371 (444)
Q Consensus       297 v~~~~sl~ea~~~m~~~~-----~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~  371 (444)
                      +.+++++.++++.|.+++     +..+||+|+ +++++|+++.+|+++.    .     ...++.+++..          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~~l~~~----~-----~~~~v~~~~~~----------   61 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDE-EGRLLGVVSLRDLLLA----D-----PDTPVSDIMDT----------   61 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECC-CCCEEEEEEHHHHhcC----C-----CcchHHHHhCC----------
Confidence            567899999999998877     468999987 7899999999999753    1     13578898874          


Q ss_pred             CCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013373          372 VNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF  422 (444)
Q Consensus       372 ~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l  422 (444)
                        ++.++.+++++.++++.|..++.+.+||+|+++ +++|+||..|+++.+
T Consensus        62 --~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvit~~dll~~~  109 (109)
T cd04606          62 --DVISVSADDDQEEVARLFEKYDLLALPVVDEEG-RLVGIITVDDVIDVI  109 (109)
T ss_pred             --CCeEEcCCCCHHHHHHHHHHcCCceeeeECCCC-cEEEEEEhHHhhhhC
Confidence              789999999999999999999999999999887 999999999999753

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11573 hypothetical protein; Provisional

Probab=99.38  E-value=1e-11  Score=125.56  Aligned_cols=135  Identities=12%  Similarity=0.207  Sum_probs=113.2

Q ss_pred             cccCcccccccCCCCCC-CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCc
Q 013373          276 IASQPISDLGLPFMSSD-EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLT  354 (444)
Q Consensus       276 ~~~~~v~~l~l~im~~~-~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~  354 (444)
                      +.+.++++    +|+++ +++.++.++++.++++.+.+++++++||++++.++++|++..+|++..+.+...   .....
T Consensus       184 l~~~~v~e----iMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~---~~~~~  256 (413)
T PRK11573        184 LEKVTVDD----IMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE---FTKEN  256 (413)
T ss_pred             cCCCChhh----cCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCc---CCHHH
Confidence            35778999    78763 789999999999999999999999999998745899999999999876432111   11122


Q ss_pred             HHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCccch
Q 013373          355 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLD  431 (444)
Q Consensus       355 v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~~~~  431 (444)
                      +.++++             ++.+++++.++.++++.|.+++.|-..|+|+.| ..+|+||..||+..++++..+.|+
T Consensus       257 l~~~~r-------------~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG-~~~GiVTleDilEeivGei~de~d  319 (413)
T PRK11573        257 MLRAAD-------------EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYG-DIQGLVTVEDILEEIVGDFTTSMS  319 (413)
T ss_pred             HHhhcc-------------CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCC-CeEEEeeHHHHHHHHhCCCCcccC
Confidence            344544             889999999999999999999999999999998 999999999999999998877665

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.38  E-value=7.2e-12  Score=104.94  Aligned_cols=118  Identities=21%  Similarity=0.346  Sum_probs=96.9

Q ss_pred             CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCccc----ccccCcccccccCCCC
Q 013373          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD----IIASQPISDLGLPFMS  290 (444)
Q Consensus       215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~----~~~~~~v~~l~l~im~  290 (444)
                      .++..+.+++++.++++.|.+++++++||++++ |+++|+++..|+.+.+..........    .....++.+    +|.
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~   76 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGD----IMS   76 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHH----hcc
Confidence            457889999999999999999999999999986 89999999999987664331100000    012346777    676


Q ss_pred             CCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          291 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       291 ~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      . ++.++.+++++.++++.|.+++.+.+||+++ +|+++|++|.+|++.
T Consensus        77 ~-~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvit~~di~~  123 (124)
T cd04600          77 P-PVVTVRPDTPIAELVPLLADGGHHHVPVVDE-DRRLVGIVTQTDLIA  123 (124)
T ss_pred             C-CCeeeCCCCcHHHHHHHHHhcCCCceeEEcC-CCCEEEEEEhHHhhc
Confidence            5 7899999999999999999999999999998 799999999999874

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.38  E-value=1.3e-11  Score=100.10  Aligned_cols=103  Identities=30%  Similarity=0.429  Sum_probs=91.4

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.++.+++++.++++.|.+++...+||+|  +++++|+++..|+++..         ...++.++|..           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d--~~~~~Giv~~~~l~~~~---------~~~~~~~~~~~-----------   59 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE--DGKLVGIITSRDVRRAH---------PNRLVADAMTR-----------   59 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEehHHhhccc---------ccCCHHHHccC-----------
Confidence            567889999999999999999999999998  58999999999997642         13468888874           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                       ++.++++++++.++++.|.+++..++||+|+ + +++|+||..||+.
T Consensus        60 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~G~it~~~l~~  104 (105)
T cd04599          60 -EVVTISPEASLLEAKRLMEEKKIERLPVLRE-R-KLVGIITKGTIAL  104 (105)
T ss_pred             -CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-C-EEEEEEEHHHhcc
Confidence             7899999999999999999999999999998 6 9999999999973

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.38  E-value=6.5e-12  Score=102.69  Aligned_cols=106  Identities=26%  Similarity=0.450  Sum_probs=91.8

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.++..++++.++.+.|.+++...+||+|+ +|+++|+++..|+++...        ...++.++|..           
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~--------~~~~v~~~~~~-----------   62 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDD-DGKLVGIVTNRDLRFETD--------LDKPVSEVMTP-----------   62 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcC-CCEEEEEEEhhHeeeccc--------CCCCHHHhccc-----------
Confidence            5788899999999999999999999999997 799999999999864311        23578899874           


Q ss_pred             CCCeEecC-CCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          373 NPPITCKL-ESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~-~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                       .+..+.+ ++++.++++.|.+.+.+.+||+|+++ +++|+||.+|+++
T Consensus        63 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvi~~~dil~  109 (110)
T cd04601          63 -ENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEG-KLKGLITVKDIEK  109 (110)
T ss_pred             -CceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCC-CEEEEEEhhhhhc
Confidence             5566666 99999999999999999999999887 9999999999986

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.38  E-value=1e-11  Score=102.38  Aligned_cols=108  Identities=22%  Similarity=0.356  Sum_probs=93.9

Q ss_pred             ceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCceE
Q 013373          217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT  296 (444)
Q Consensus       217 ~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~~  296 (444)
                      .+++.+++++.++++.|.+++.+.+||+|++ ++++|+++..|+.+.+.....       ...++.+    +|.. ++.+
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~-------~~~~v~~----~~~~-~~~~   70 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLS-------LDDPVSE----VMNR-NPIT   70 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCC-------cCCCHHH----hhcC-CCEE
Confidence            5678999999999999999999999999987 899999999999876654321       2346777    6765 7889


Q ss_pred             ecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHH
Q 013373          297 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR  338 (444)
Q Consensus       297 v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll  338 (444)
                      +.+++++.++++.|.+++.+.+||+++ +++++|+||.+|++
T Consensus        71 v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~  111 (113)
T cd04607          71 AKVGSSREEILALMRERSIRHLPILDE-EGRVVGLATLDDLL  111 (113)
T ss_pred             EcCCCCHHHHHHHHHHCCCCEEEEECC-CCCEEEEEEhHHhc
Confidence            999999999999999999999999997 78999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=1.4e-11  Score=101.31  Aligned_cols=110  Identities=26%  Similarity=0.453  Sum_probs=93.3

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH-HhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH-LLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK  371 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~-~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~  371 (444)
                      ++.++.+++++.++++.|.+++.+.+||+++  ++++|+++..|++. .+.. ..  .....++.++|..          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~-~~--~~~~~~~~~~~~~----------   66 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAE-GR--DPDTTTVGDVMTR----------   66 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhc-cC--CcccCCHHHhccC----------
Confidence            5788999999999999999999999999994  99999999999873 3322 11  1123358899874          


Q ss_pred             CCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          372 VNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       372 ~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                        .+.++.+++++.++++.|.+.+.+++||+++++ +++|+||..|+++
T Consensus        67 --~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~G~it~~di~~  112 (113)
T cd04622          67 --GVVTVTEDDDVDEAARLMREHQVRRLPVVDDDG-RLVGIVSLGDLAR  112 (113)
T ss_pred             --CccEECCCCCHHHHHHHHHHcCCCeeeEECCCC-cEEEEEEHHHhhc
Confidence              788999999999999999999999999999877 9999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=6.7e-12  Score=102.94  Aligned_cols=109  Identities=16%  Similarity=0.348  Sum_probs=94.7

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~  295 (444)
                      ++.++.+++++.++++.|.+.+..++||+|.+ ++++|+++..++.+.+....        ...++.+    +|.. ++.
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~--------~~~~v~~----~~~~-~~~   67 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAEGG--------PDAPVRG----VMRR-DFP   67 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHhcC--------CCCcHHH----HhcC-CCc
Confidence            46788999999999999988889999999986 89999999999988765431        2246777    6765 789


Q ss_pred             EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      ++.+++++.++++.|.+++...+||+++ +++++|++|.+|+..
T Consensus        68 ~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~dl~~  110 (111)
T cd04639          68 TVSPSATLDAVLRLMQQGGAPAVPVVDG-SGRLVGLVTLENVGE  110 (111)
T ss_pred             EECCCCcHHHHHHHHHhcCCceeeEEcC-CCCEEEEEEHHHhhc
Confidence            9999999999999999999999999987 689999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.37  E-value=5.6e-12  Score=118.93  Aligned_cols=135  Identities=19%  Similarity=0.379  Sum_probs=115.2

Q ss_pred             CcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHH
Q 013373          279 QPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRD  357 (444)
Q Consensus       279 ~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~  357 (444)
                      ..|.+    +|.+ .....+.+++++.+..++..+.+.+++||+|. ..+++|++|.+|+....         ...++..
T Consensus       188 ~~Ved----i~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~-~~kvvGvVt~rDv~~~~---------~~t~ieK  253 (432)
T COG4109         188 ITVED----IMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR-SMKVVGVVTMRDVLDKK---------PSTTIEK  253 (432)
T ss_pred             eeHHH----hccccccceeccccccHHHHHHHHHHcCCCccceecc-cceEEEEEEehhhhcCC---------CCccHHH
Confidence            46677    6663 25678899999999999999999999999998 89999999999997662         3568999


Q ss_pred             HhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhH---cCC--Cccchh
Q 013373          358 FMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI---FEP--PNHLDN  432 (444)
Q Consensus       358 ~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~---~e~--~~~~~~  432 (444)
                      +|++            +|+++.+.+++..+.++|...++.-+||+|++. +++|+||++|+++.+-   .+|  +.-|++
T Consensus       254 VMtk------------np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~-~llGiitR~dvlk~lq~~q~qpqvget~~d  320 (432)
T COG4109         254 VMTK------------NPITVRAKTSVASVAQMMIWEGIEMLPVVDSNN-TLLGIITRQDVLKSLQMIQRQPQVGETISD  320 (432)
T ss_pred             Hhcc------------CCeeecccchHHHHHHHHHhccceeeeEEcCCc-eEEEEEEHHHHHHHHHHhccCCcccccHHH
Confidence            9995            899999999999999999999999999999998 9999999999999885   345  445666


Q ss_pred             hhhhhHHH
Q 013373          433 YFGFSVKD  440 (444)
Q Consensus       433 ~~~~~~~~  440 (444)
                      .....+.|
T Consensus       321 ~I~~~l~e  328 (432)
T COG4109         321 QIANNLSE  328 (432)
T ss_pred             HHHhhhhh
Confidence            55555544

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=1.4e-11  Score=101.77  Aligned_cols=112  Identities=16%  Similarity=0.225  Sum_probs=94.3

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~  295 (444)
                      ++..+.+++++.++++.|.+++.+.+||+|++.++++|+++..|+.+.+.....     .....++.+    +|.. ++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~-----~~~~~~v~~----~~~~-~~~   71 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGR-----DPDRVNVYE----IMTK-PLI   71 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCC-----CCCccCHHH----HhcC-CCe
Confidence            478899999999999999999999999998632699999999999886644210     012356778    6765 789


Q ss_pred             EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      ++.+++++.++++.|.+++...+||+++  ++++|+|+..|+++
T Consensus        72 ~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~  113 (114)
T cd04630          72 SVSPDMDIKYCARLMERTNIRRAPVVEN--NELIGIISLTDIFL  113 (114)
T ss_pred             eECCCCCHHHHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence            9999999999999999999999999984  89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.37  E-value=1.4e-11  Score=101.96  Aligned_cols=111  Identities=14%  Similarity=0.270  Sum_probs=94.5

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~  295 (444)
                      ++..+.+++++.++++.|.+.+.+.+||+|.+ ++++|+++..|+.+.+.....      ....++.+    +|.. ++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~------~~~~~~~~----~~~~-~~~   69 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEA------GEPSAVDE----VATP-PLL   69 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhcccc------cccccHHH----hccC-Cce
Confidence            46688999999999999999999999999987 899999999999887653311      02334667    6765 789


Q ss_pred             EecCCCcHHHHHHHHHHcCCCeEeEEeCCC--CeEEEEEeHHHHHH
Q 013373          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQ--KKIVGNVSIRDIRH  339 (444)
Q Consensus       296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~--~~lvGiIt~~Dll~  339 (444)
                      ++.+++++.+++++|.+++...+||+|+ +  |+++|+||.+|+++
T Consensus        70 ~v~~~~~l~~~l~~~~~~~~~~~~Vvd~-~~~~~~~Gvit~~di~~  114 (115)
T cd04593          70 TVHPDEPLAHALDRMASRGLRQLPVVDR-GNPGQVLGLLTRENVLL  114 (115)
T ss_pred             EECCCCCHHHHHHHHHHcCCceeeEEeC-CCCCeEEEEEEhHHhhc
Confidence            9999999999999999999999999987 5  79999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.37  E-value=1.6e-11  Score=100.27  Aligned_cols=109  Identities=23%  Similarity=0.434  Sum_probs=91.7

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.++.+++++.++.+.|.+++++.+||+++  ++++|+++..|+.+.+.....   ....++.++|..           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~---~~~~~~~~~~~~-----------   65 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKA---KFSLPVREVMGE-----------   65 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhcccc---ccCcCHHHHhcC-----------
Confidence            5778999999999999999999999999994  899999999999987653211   113578899874           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  421 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~  421 (444)
                       ++.++++++++.+++++|.+ . +.+||+++++ +++|+||++||++|
T Consensus        66 -~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~-~~~Gvvt~~di~~~  110 (110)
T cd04609          66 -PLPTVDPDAPIEELSELLDR-G-NVAVVVDEGG-KFVGIITRADLLKY  110 (110)
T ss_pred             -CCceeCCCCcHHHHHHHHHh-C-CceeEEecCC-eEEEEEeHHHhhcC
Confidence             78899999999999999988 3 3578998887 99999999999874

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.37  E-value=1e-11  Score=126.95  Aligned_cols=177  Identities=16%  Similarity=0.204  Sum_probs=130.5

Q ss_pred             CCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCc
Q 013373          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP  280 (444)
Q Consensus       201 ~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~  280 (444)
                      +..++.++|.    .+++++.+++++.+++++|.+++++.+||+|++ ++++|+||..|+...       .     ...+
T Consensus        87 ~~VKv~~iMi----~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~-gklvGIVT~rDL~~~-------~-----~~~~  149 (479)
T PRK07807         87 AWVKSRDLVF----DTPVTLSPDDTVGDALALLPKRAHGAVVVVDEE-GRPVGVVTEADCAGV-------D-----RFTQ  149 (479)
T ss_pred             hhcccccccc----cCCeEECCCCCHHHHHHHHHhcCCceEEEECCC-CeEEEEEeHHHHhcC-------c-----cCCC
Confidence            3455677777    679999999999999999999999999999976 899999999998421       0     2256


Q ss_pred             ccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhc
Q 013373          281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN  360 (444)
Q Consensus       281 v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~  360 (444)
                      +.+    +|+. ++.++.+++++.+++++|.+++++.+||+|+ +++++|+||.+||++....+.....-....+..+  
T Consensus       150 V~d----iMt~-~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~-~g~lvGIIT~~DIl~~~~~~~~~~~~g~l~V~aa--  221 (479)
T PRK07807        150 VRD----VMST-DLVTLPAGTDPREAFDLLEAARVKLAPVVDA-DGRLVGVLTRTGALRATIYTPAVDAAGRLRVAAA--  221 (479)
T ss_pred             HHH----hccC-CceEECCCCcHHHHHHHHHhcCCCEEEEEcC-CCeEEEEEEHHHHHHHhhCCchhhhhhccchHhh--
Confidence            888    7886 8999999999999999999999999999998 7899999999999998664321110011112222  


Q ss_pred             ccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhH
Q 013373          361 AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI  423 (444)
Q Consensus       361 ~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~  423 (444)
                                       +.......+.++.|.+.+++. .++|-..++   -....+.++.+-
T Consensus       222 -----------------v~~~~~~~~~a~~Lv~aGvd~-i~~D~a~~~---~~~~~~~i~~ik  263 (479)
T PRK07807        222 -----------------VGINGDVAAKARALLEAGVDV-LVVDTAHGH---QEKMLEALRAVR  263 (479)
T ss_pred             -----------------hccChhHHHHHHHHHHhCCCE-EEEeccCCc---cHHHHHHHHHHH
Confidence                             222234667888888888876 466643323   333444444444

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=1.8e-11  Score=100.54  Aligned_cols=111  Identities=23%  Similarity=0.422  Sum_probs=94.6

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~  295 (444)
                      ++..+.++.++.++++.|.+++++++||+|++ ++++|+++..|+++.+......     ....++.+    +|.. ++.
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~-----~~~~~~~~----~~~~-~~~   70 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGAS-----ALDTPVSE----IMTR-NVI   70 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCC-----ccccCHHH----hcCC-CcE
Confidence            46788999999999999999999999999987 7999999999999876543110     02346777    6765 789


Q ss_pred             EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      ++.+++++.++++.|.+.+.+.+||+++  ++++|+||.+|+++
T Consensus        71 ~v~~~~~~~~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~  112 (113)
T cd04623          71 TVTPDDTVDEAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK  112 (113)
T ss_pred             EECCCCcHHHHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence            9999999999999999999999999984  89999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=1.6e-11  Score=100.93  Aligned_cols=110  Identities=26%  Similarity=0.449  Sum_probs=95.2

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~  295 (444)
                      ++..+.+++++.++++.|.+++.+++||+|++ ++++|+++..|+++.+.....       ...++.+    +|.. ++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~-------~~~~v~~----~~~~-~~~   68 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGID-------LDTPVSE----IMTR-DLV   68 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCC-------CccCHHH----hccC-CCE
Confidence            46788999999999999999999999999987 899999999999887654321       2346777    6765 789


Q ss_pred             EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      ++.+++++.++++.|.+++...+||+++ +|+++|++|..|+++
T Consensus        69 ~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~g~~~Gilt~~dl~~  111 (112)
T cd04624          69 TVDPDEPVAEAAKLMRKNNIRHHLVVDK-GGELVGVISIRDLVR  111 (112)
T ss_pred             EECCCCcHHHHHHHHHHcCccEEEEEcC-CCcEEEEEEHHHhcc
Confidence            9999999999999999999999999997 799999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.36  E-value=3.3e-12  Score=107.64  Aligned_cols=113  Identities=15%  Similarity=0.209  Sum_probs=95.2

Q ss_pred             CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCc
Q 013373          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  294 (444)
Q Consensus       215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~  294 (444)
                      .+++++.++.++.++++.|.+++++.+||+|++ ++++|+++..|+++.+..... .     ...++.+    +|.. ++
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~-~-----~~~~v~~----im~~-~~   69 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKV-Q-----PSDPVSK----ALYK-QF   69 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhcc-C-----CCCcHHH----Hhhc-cc
Confidence            357889999999999999999999999999987 799999999999876654311 1     4568999    7886 89


Q ss_pred             eEecCCCcHHHHHHHHH---------HcCCCeEeEEeCCCCeEEEEEeHHHHHHH
Q 013373          295 ITIQSNELILEAFKRMK---------DNNIGGIPVVEGQQKKIVGNVSIRDIRHL  340 (444)
Q Consensus       295 ~~v~~~~sl~ea~~~m~---------~~~~~~lpVvd~~~~~lvGiIt~~Dll~~  340 (444)
                      .++.+++++.++.+++.         +.+.+.+||+++ +|+++|+||.+|++++
T Consensus        70 ~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~Givt~~Dl~~~  123 (124)
T cd04608          70 KRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK-QEKPIGIVTKIDLLSY  123 (124)
T ss_pred             eecCCCCCHHHHHhhcccCCceEEEecccccccccccc-ccceEEEEehhHhhhh
Confidence            99999999999998653         335778888887 7999999999999876

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=2.6e-11  Score=99.58  Aligned_cols=110  Identities=31%  Similarity=0.515  Sum_probs=93.8

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.++++++++.++++.|.+.+.+.+||+++  ++++|+++..|+++.+.....  .....++.++|..           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~--~~~~~~~~~~~~~-----------   66 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNL--KPREVPVGEVMST-----------   66 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccC--CcccCCHHHhcCC-----------
Confidence            5678899999999999999999999999995  499999999999986542211  1124578899874           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                       ++.++.+++++.++++.|.+++.+.+||+|+ + +++|+||..||++
T Consensus        67 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~Gvi~~~di~~  111 (112)
T cd04802          67 -PLITIDPNASLNEAAKLMAKHGIKRLPVVDD-D-ELVGIVTTTDIVM  111 (112)
T ss_pred             -CcEEECCCCCHHHHHHHHHHcCCCeeEEeeC-C-EEEEEEEhhhhhc
Confidence             7889999999999999999999999999986 4 9999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.36  E-value=1.7e-11  Score=100.41  Aligned_cols=108  Identities=21%  Similarity=0.442  Sum_probs=94.2

Q ss_pred             CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCc
Q 013373          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  294 (444)
Q Consensus       215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~  294 (444)
                      ++++.+.+++++.++++.|.+++...+||+|++ |++.|+++..++++.+...          ..++.+    +|.. ++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~----------~~~~~~----~~~~-~~   65 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARD----------KKSVED----IMTR-NV   65 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhC----------ccCHHH----hcCC-CC
Confidence            467889999999999999999999999999987 8999999999998766432          124667    5665 78


Q ss_pred             eEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       295 ~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      .++.+++++.++++.|.+++.+.+||+++ +|+++|+++..|+++
T Consensus        66 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~G~v~~~di~~  109 (110)
T cd04605          66 ITATPDEPIDVAARKMERHNISALPVVDA-ENRVIGIITSEDISK  109 (110)
T ss_pred             eEECCCCcHHHHHHHHHHhCCCEEeEECC-CCcEEEEEEHHHhhh
Confidence            89999999999999999999999999997 799999999999864

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=1e-11  Score=102.66  Aligned_cols=114  Identities=20%  Similarity=0.334  Sum_probs=93.5

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~  295 (444)
                      +++++.+++++.++++.|.+++++.+||+|++ ++++|+++..|+.+++....... ...+...++.+    +|.+ ++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~-~~~~~~~~v~~----~~~~-~~~   74 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLENLD-LERLVDLKVID----VMNT-DVP   74 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCC-CcEEEEEeHHHHHHHhhccCchh-HHHHhCCcHHH----HhcC-CCc
Confidence            47889999999999999999999999999976 79999999999998775432111 00112457777    6775 789


Q ss_pred             EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      ++.+++++.++++.|.+.+  .+||+++ +++++|++|.+|+++
T Consensus        75 ~v~~~~~l~~a~~~~~~~~--~~~Vv~~-~~~~~Gvit~~dil~  115 (116)
T cd04643          75 VIIDDADIEEILHLLIDQP--FLPVVDD-DGIFIGIITRREILK  115 (116)
T ss_pred             eecCCCCHHHHHHHHhcCC--ceeEEeC-CCeEEEEEEHHHhhc
Confidence            9999999999999998765  5899997 799999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=1.3e-11  Score=103.14  Aligned_cols=114  Identities=20%  Similarity=0.288  Sum_probs=94.8

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCc---c--ccc--cccCcHHHHhcccCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE---L--FSN--FRQLTVRDFMNAVVPT  365 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~---~--~~~--~~~~~v~~~m~~~~~~  365 (444)
                      ++.++.+++++.++++.|.+++++++||+|+  |+++|+++..|+.+.+....   .  ...  ....++.++|..    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----   75 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTR----   75 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcC----
Confidence            5778999999999999999999999999994  89999999999987653210   0  000  012367788864    


Q ss_pred             CCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373          366 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  421 (444)
Q Consensus       366 ~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~  421 (444)
                              ++.++.+++++.++++.|.+++...+||+|+++ +++|++|+.|++++
T Consensus        76 --------~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~-~~~Gvit~~dll~~  122 (122)
T cd04637          76 --------DPITVSPDTPVDEASKLLLENSISCLPVVDENG-QLIGIITWKDLLKY  122 (122)
T ss_pred             --------CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCC-CEEEEEEHHHhhhC
Confidence                    789999999999999999999999999999887 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.36  E-value=1.4e-11  Score=127.44  Aligned_cols=115  Identities=24%  Similarity=0.373  Sum_probs=102.1

Q ss_pred             CCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCC
Q 013373          288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP  367 (444)
Q Consensus       288 im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~  367 (444)
                      +|.. ++.++.+++++.++++.|.+++++.+||+|+ +++++|+|+.+|+.....        ...++.++|..      
T Consensus        92 im~~-~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~-~g~lvGiVt~~DL~~~~~--------~~~~V~dim~~------  155 (486)
T PRK05567         92 GVVT-DPVTVTPDTTLAEALALMARYGISGVPVVDE-NGKLVGIITNRDVRFETD--------LSQPVSEVMTK------  155 (486)
T ss_pred             cccC-CCeEeCCCCCHHHHHHHHHHhCCCEEEEEcc-CCEEEEEEEHHHhhhccc--------CCCcHHHHcCC------
Confidence            5665 8999999999999999999999999999998 899999999999965321        23579999972      


Q ss_pred             CCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          368 DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       368 ~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                           .+++++.+++++.++++.|.+++++.+||+|+++ +++|+||.+||++.+..
T Consensus       156 -----~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g-~lvGiIT~~DLl~~~~~  206 (486)
T PRK05567        156 -----ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNG-RLKGLITVKDIEKAEEF  206 (486)
T ss_pred             -----CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-cEEEEEEhHHhhhhhhC
Confidence                 2889999999999999999999999999999998 99999999999998753

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.36  E-value=1e-11  Score=128.40  Aligned_cols=176  Identities=20%  Similarity=0.327  Sum_probs=132.0

Q ss_pred             HHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCccccc
Q 013373          205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDL  284 (444)
Q Consensus       205 v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l  284 (444)
                      ++++|.    .+++++.+++++.+++++|.+++++++||+|++ ++++|++|.+|+....  .         ...++.+ 
T Consensus        89 ~~dim~----~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~DL~~~~--~---------~~~~V~d-  151 (486)
T PRK05567         89 SESGVV----TDPVTVTPDTTLAEALALMARYGISGVPVVDEN-GKLVGIITNRDVRFET--D---------LSQPVSE-  151 (486)
T ss_pred             hhhccc----CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccC-CEEEEEEEHHHhhhcc--c---------CCCcHHH-
Confidence            566666    679999999999999999999999999999976 8999999999995421  1         2357888 


Q ss_pred             ccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccc-cccCcHHHHhcccC
Q 013373          285 GLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSN-FRQLTVRDFMNAVV  363 (444)
Q Consensus       285 ~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~-~~~~~v~~~m~~~~  363 (444)
                         +|...+++++.+++++.++++.|.+++++.+||+|+ +++++|+||.+|+++.+..+..... ...+.|...|.   
T Consensus       152 ---im~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe-~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~---  224 (486)
T PRK05567        152 ---VMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD-NGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVG---  224 (486)
T ss_pred             ---HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeecc---
Confidence               677337899999999999999999999999999998 8999999999999987643221000 01112222222   


Q ss_pred             CCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373          364 PTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  421 (444)
Q Consensus       364 ~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~  421 (444)
                                    .++  .-.+.++.|.+.+++.+ ++|...++..++++..+.++.
T Consensus       225 --------------~~~--~~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~~  265 (486)
T PRK05567        225 --------------VGA--DNEERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIKA  265 (486)
T ss_pred             --------------cCc--chHHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHHh
Confidence                          223  22788888899999854 676532377777766666554

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.35  E-value=9e-12  Score=102.87  Aligned_cols=110  Identities=15%  Similarity=0.208  Sum_probs=92.1

Q ss_pred             CceEeeCCCCHHHHHHHHHhCC-CCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCC-CC
Q 013373          216 PFLPVATDDSMLSVLLLLSKYR-LRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSS-DE  293 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~-i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~-~~  293 (444)
                      ++.++.+++++.+|++.|.+++ .+.+||+|.+ ++++|+++..|+++......        ...++.+    +|.. .+
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~--------~~~~v~~----~~~~~~~   68 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNE-GRYVGIISLADLRAIPTSQW--------AQTTVIQ----VMTPAAK   68 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCC-CcEEEEEEHHHHHHHHHhhc--------cccchhh----hhccccc
Confidence            4778999999999999997775 8899999976 89999999999988664221        2346777    5653 13


Q ss_pred             ceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       294 ~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      +.++.+++++.++++.|.+++.+.+||+++ +++++|+++.+|+++
T Consensus        69 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~-~~~~~Gvl~~~di~~  113 (114)
T cd04801          69 LVTVLSEESLAEVLKLLEEQGLDELAVVED-SGQVIGLITEADLLR  113 (114)
T ss_pred             ceEECCCCcHHHHHHHHHHCCCCeeEEEcC-CCcEEEEEeccceec
Confidence            678999999999999999999999999997 789999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.35  E-value=1.9e-11  Score=101.00  Aligned_cols=107  Identities=20%  Similarity=0.305  Sum_probs=90.9

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCC--CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQ--QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSG  370 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~--~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~  370 (444)
                      ++.++.+++++.++++.|.+++...+||+|+.  +++++|+++..|++....        ...++.++|..         
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~--------~~~~v~~~~~~---------   65 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD--------SETPLSEVMTP---------   65 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc--------cCCCHHHhcCC---------
Confidence            46788999999999999998999999999851  489999999999875421        12468899974         


Q ss_pred             CCCCCeEecC--CCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          371 KVNPPITCKL--ESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       371 ~~~~~~~v~~--~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                         .+.++..  ++++.++++.|.+++.+.+||+|+++ +++|+||++||++
T Consensus        66 ---~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~-~~~Gvit~~di~~  113 (114)
T cd04602          66 ---REVLVVAPTGITLEEANEILRESKKGKLPIVNDDG-ELVALVTRSDLKK  113 (114)
T ss_pred             ---CceEEECCCCCCHHHHHHHHHhcCCCceeEECCCC-eEEEEEEHHHhhc
Confidence               5666755  99999999999999999999999887 9999999999975

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.35  E-value=2.3e-11  Score=101.33  Aligned_cols=113  Identities=27%  Similarity=0.405  Sum_probs=95.2

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCc--cc----cccccCcHHHHhcccCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE--LF----SNFRQLTVRDFMNAVVPTT  366 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~--~~----~~~~~~~v~~~m~~~~~~~  366 (444)
                      ++.++++++++.++.+.|.+.+.+.+||+|+ +++++|+++..|+.+......  ..    ......++.++|..     
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----   75 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDE-EGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTK-----   75 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECC-CCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhC-----
Confidence            5778899999999999999999999999998 799999999999987643110  00    01234578899874     


Q ss_pred             CCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          367 PDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       367 ~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                             ++.++.+++++.++++.|.+++.+.+||+++ + +++|++|..||++
T Consensus        76 -------~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~-~~~Gvv~~~di~~  120 (121)
T cd04584          76 -------DVITVHPLDTVEEAALLMREHRIGCLPVVED-G-RLVGIITETDLLR  120 (121)
T ss_pred             -------CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-C-EEEEEEEHHHhhc
Confidence                   7899999999999999999999999999987 6 9999999999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.34  E-value=1.4e-11  Score=126.28  Aligned_cols=124  Identities=19%  Similarity=0.266  Sum_probs=107.5

Q ss_pred             ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHH-----cCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccc
Q 013373          277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKD-----NNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR  351 (444)
Q Consensus       277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~-----~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~  351 (444)
                      ...++++    +|++ ++.+++++.++.++++.|.+     ++...++|+|+ +++++|+++.+|++..  .       .
T Consensus       129 ~e~tvg~----iMt~-~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~-~~~l~GvV~l~dLl~a--~-------~  193 (449)
T TIGR00400       129 SDDSAGR----IMTI-EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE-SKHLKGVLSIRDLILA--K-------P  193 (449)
T ss_pred             CcchHHH----hCcC-ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC-CCeEEEEEEHHHHhcC--C-------C
Confidence            5678889    7986 89999999999999999986     45678899987 7999999999999753  1       2


Q ss_pred             cCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCc
Q 013373          352 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPN  428 (444)
Q Consensus       352 ~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~  428 (444)
                      +.++.++|++            ++.++++++++.++++.|.+++...+||||++| +++|+||.+|+++.+..+...
T Consensus       194 ~~~v~~im~~------------~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g-~lvGiIt~~Dil~~l~~~~~e  257 (449)
T TIGR00400       194 EEILSSIMRS------------SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEG-RLVGIVTVDDIIDVIQSEATE  257 (449)
T ss_pred             CCcHHHHhCC------------CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCC-eEEEEEEHHHHHHHHHhhhHH
Confidence            3479999984            788999999999999999999999999999988 999999999999999865443

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.34  E-value=2.5e-11  Score=98.75  Aligned_cols=104  Identities=28%  Similarity=0.433  Sum_probs=92.0

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.++..+.++.++++.|.+++...+||++  +++++|+++..|++..  .       ...++.++|..           
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d--~~~~~g~v~~~~l~~~--~-------~~~~~~~~~~~-----------   60 (107)
T cd04610           3 DVITVSPDNTVKDVIKLIKETGHDGFPVVD--NGKVVGIVSARDLLGK--D-------PDETVEEIMSK-----------   60 (107)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeeeEeE--CCEEEEEEEHHHhhcc--C-------ccccHHHhCCC-----------
Confidence            578899999999999999988888999998  4899999999999753  1       13468899874           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                       .+.++.+++++.++++.|.+++.+++||+|++| +++|+|+..||++
T Consensus        61 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g-~~~Gvi~~~di~~  106 (107)
T cd04610          61 -DLVVAVPEMDIMDAARVMFRTGISKLPVVDENN-NLVGIITNTDVIR  106 (107)
T ss_pred             -CCeEECCCCCHHHHHHHHHHhCCCeEeEECCCC-eEEEEEEHHHhhc
Confidence             788999999999999999999999999999887 9999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=2e-11  Score=101.86  Aligned_cols=117  Identities=22%  Similarity=0.431  Sum_probs=96.4

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCc---ccccccCcccccccCCCCCC
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW---FDIIASQPISDLGLPFMSSD  292 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~---~~~~~~~~v~~l~l~im~~~  292 (444)
                      ++.++.+++++.++++.|.+.+++++||++++ ++++|+++..++.+.+........   .......++.+    +|.. 
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~~-   75 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAE----VMKT-   75 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHH----hhCC-
Confidence            47789999999999999999999999999986 899999999999887654321100   00113456777    6765 


Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      ++.++.+++++.++++.|.+.+.+.+||+++ +++++|++|..|++.
T Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dl~~  121 (122)
T cd04803          76 DVLTVTPDTPLREAAEIMVENKIGCLPVVDD-KGTLVGIITRSDFLR  121 (122)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC-CCCEEEEEEHHHhhc
Confidence            7899999999999999999999999999997 689999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.34  E-value=1.9e-11  Score=125.99  Aligned_cols=116  Identities=17%  Similarity=0.180  Sum_probs=101.0

Q ss_pred             CCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCC--CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCC
Q 013373          289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ--QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTT  366 (444)
Q Consensus       289 m~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~--~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~  366 (444)
                      |.+ +++++++++++.++++.|.+++++.+||+|+.  +++++|+||.+|+....        ....+|.++|++.    
T Consensus       106 mi~-dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~--------~~~~~V~eIMt~~----  172 (505)
T PLN02274        106 FVS-DPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN--------DRETKLSEVMTSD----  172 (505)
T ss_pred             ccC-CCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc--------ccCCcHHHHhccC----
Confidence            444 79999999999999999999999999999862  27999999999996542        1256899999840    


Q ss_pred             CCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          367 PDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       367 ~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                            .+++++.+++++.+++++|.+++.+.+||||+++ +++|+||++||++.+..
T Consensus       173 ------~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g-~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        173 ------DDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDG-ELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             ------CCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEHHHHHHHhhC
Confidence                  1378999999999999999999999999999887 99999999999998875

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.34  E-value=2.2e-11  Score=117.50  Aligned_cols=170  Identities=11%  Similarity=0.194  Sum_probs=126.8

Q ss_pred             hhccCCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcc
Q 013373          194 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF  273 (444)
Q Consensus       194 l~~~~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~  273 (444)
                      +.+.-.+...+|+++|...  .+++++++++++.++++.+.+++.+++||++.+.++++|+++.+|++..+....     
T Consensus        58 i~~vl~l~~~~V~diMtpr--~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~-----  130 (292)
T PRK15094         58 LEGVMDIADQRVRDIMIPR--SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA-----  130 (292)
T ss_pred             HHHHhccCCCEEeEEccch--HHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccC-----
Confidence            3334457788999999832  469999999999999999999999999999875468999999999987553211     


Q ss_pred             cccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccC
Q 013373          274 DIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQL  353 (444)
Q Consensus       274 ~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~  353 (444)
                         ....+.+    +|.  +++++.+++++.++++.|.+++.+.+||+|+ .|.++|+||..|++..+.. +........
T Consensus       131 ---~~~~l~~----l~r--~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe-~G~viGiVTleDIle~ivG-ei~de~d~~  199 (292)
T PRK15094        131 ---EAFSMDK----VLR--QAVVVPESKRVDRMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIVG-EIEDEYDEE  199 (292)
T ss_pred             ---CcCCHHH----HcC--CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC-CCCEEEEeEHHHHHHHHhC-CCccccccc
Confidence               1124667    565  4568999999999999999999999999997 7889999999999998763 221111100


Q ss_pred             cHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHH
Q 013373          354 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSL  391 (444)
Q Consensus       354 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m  391 (444)
                      .-.++..          ....-+.++...++.+..+.+
T Consensus       200 ~~~~i~~----------~~~~~~~v~G~~~l~dl~~~l  227 (292)
T PRK15094        200 DDIDFRQ----------LSRHTWTVRALASIEDFNEAF  227 (292)
T ss_pred             cccccEE----------eCCCeEEEEeccCHHHHHHHh
Confidence            0001111          012457788888888888776

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=1.9e-11  Score=102.95  Aligned_cols=120  Identities=18%  Similarity=0.293  Sum_probs=92.0

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCccccc----ccCcccccccCCCCC
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDII----ASQPISDLGLPFMSS  291 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~----~~~~v~~l~l~im~~  291 (444)
                      .++++++++++.+|++.|.++++..+||+|++ ++++|+++..|+.+..............    ....+.... ..|..
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   79 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSD-GVKSR   79 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhccccc-ccccC
Confidence            37889999999999999999999999999987 8999999999998876432110000000    000011100 03444


Q ss_pred             CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       292 ~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                       ++.++.+++++.++++.|.+++.+.+||+|+ +++++|+||..|+++
T Consensus        80 -~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-~~~~~Giit~~dil~  125 (126)
T cd04642          80 -PLITCTPSSTLKEVITKLVANKVHRVWVVDE-EGKPIGVITLTDIIS  125 (126)
T ss_pred             -CCeEECCCCcHHHHHHHHHHhCCcEEEEECC-CCCEEEEEEHHHHhc
Confidence             7899999999999999999999999999997 799999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=1.6e-11  Score=102.90  Aligned_cols=118  Identities=25%  Similarity=0.442  Sum_probs=96.1

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCc-----ccccccCcccccccCCCC
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW-----FDIIASQPISDLGLPFMS  290 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~-----~~~~~~~~v~~l~l~im~  290 (444)
                      ++..+.++.++.++++.|.+.+...+||+|++++++.|+++..|+..++........     .......++.+    +|.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~   77 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRS----IMT   77 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHH----Hhc
Confidence            477889999999999999999999999998754799999999999987754311100     00112346777    566


Q ss_pred             CCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          291 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       291 ~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      . ++.++.+++++.++++.|.+++.+.+||+++ +++++|+||..|+++
T Consensus        78 ~-~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~~Gvit~~di~~  124 (125)
T cd04631          78 R-NVITITPDDSIKDAAELMLEKRVGGLPVVDD-DGKLVGIVTERDLLK  124 (125)
T ss_pred             C-CceEeCCCCcHHHHHHHHHHcCCceEEEEcC-CCcEEEEEEHHHhhc
Confidence            5 7999999999999999999999999999997 689999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=3.2e-11  Score=103.22  Aligned_cols=116  Identities=25%  Similarity=0.327  Sum_probs=95.1

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCC-----------------ccccccc
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD-----------------WFDIIAS  278 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~-----------------~~~~~~~  278 (444)
                      ++.++.+++++.+|++.|.+++...+||+|++ ++++|+++..|+++.+.......                 .......
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDN-GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVP   80 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCC-CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhccccccccccccc
Confidence            36788999999999999999999999999986 89999999999998764321110                 0000124


Q ss_pred             CcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       279 ~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      .++.+    +|.. ++.++.+++++.++++.|.+++.+.+||++  +++++|+||.+|+++
T Consensus        81 ~~v~~----~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~--~~~~~Gvit~~di~~  134 (135)
T cd04621          81 LVAED----IMTE-EIITVSPNDDVVDAAKLMLEANISGLPVVD--NDNIVGVITKTDICR  134 (135)
T ss_pred             ccHHH----hcCC-CCeEECCCCCHHHHHHHHHHcCCCEEEEEe--CCEEEEEEEHHHHhh
Confidence            46788    6775 788999999999999999999999999998  489999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.33  E-value=3.6e-11  Score=97.67  Aligned_cols=100  Identities=23%  Similarity=0.336  Sum_probs=87.8

Q ss_pred             eEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCC
Q 013373          295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNP  374 (444)
Q Consensus       295 ~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~  374 (444)
                      .++.++.++.++++.|.+.+.+.+||+|+  ++++|+++..|+++..          ..++.++|..            .
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~----------~~~~~~~~~~------------~   59 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENAT----------YGDVVDYIVR------------G   59 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhc----------ccchhhhhhc------------C
Confidence            56789999999999999999999999994  8999999999997641          1246777764            6


Q ss_pred             CeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          375 PITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       375 ~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                      +.++.+++++.++++.|.+++...+||+|+ + +++|+||..|+++
T Consensus        60 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~-~~iGvit~~dl~~  103 (104)
T cd04594          60 IPYVRLTSTAEEAWEVMMKNKTRWCPVVDD-G-KFKGIVTLDSILD  103 (104)
T ss_pred             CcEEcCCCCHHHHHHHHHHcCcceEEEEEC-C-EEEEEEEHHHhhc
Confidence            789999999999999999999999999984 5 9999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.33  E-value=2.6e-11  Score=122.57  Aligned_cols=169  Identities=10%  Similarity=0.156  Sum_probs=130.0

Q ss_pred             hhccCCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcc
Q 013373          194 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF  273 (444)
Q Consensus       194 l~~~~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~  273 (444)
                      +.+.-.+...+++|+|...  .++++++.++++.++++.+.+++++++||++++..+++|+++.+|++..+..       
T Consensus       182 i~~vl~l~~~~v~diMtpr--~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~-------  252 (408)
T TIGR03520       182 LQGIVSFGNTDTKQVMRPR--LDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK-------  252 (408)
T ss_pred             HHHHhccCCCEeeeeCCch--HhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc-------
Confidence            3334457789999999943  5799999999999999999999999999998765689999999999875432       


Q ss_pred             cccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccC
Q 013373          274 DIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQL  353 (444)
Q Consensus       274 ~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~  353 (444)
                         ...++.+    +|.  ++.++++++++.++++.|.+++.+..+|+|+ .|.++|+||..|++..+.. +..... + 
T Consensus       253 ---~~~~l~~----~~~--~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE-~G~~~GiVT~eDileeivg-ei~de~-d-  319 (408)
T TIGR03520       253 ---KNFDWQS----LLR--EPYFVPENKKLDDLLRDFQEKKNHLAIVVDE-YGGTSGLVTLEDIIEEIVG-DISDEF-D-  319 (408)
T ss_pred             ---CCCCHHH----HcC--CCeEeCCCCcHHHHHHHHHhcCceEEEEEcC-CCCEEEEEEHHHHHHHHhC-CCCCcC-C-
Confidence               1234566    564  5789999999999999999999999999998 7999999999999998753 221111 1 


Q ss_pred             cHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHh
Q 013373          354 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLAS  393 (444)
Q Consensus       354 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~  393 (444)
                      .-.+.+..         ..+....++...++.++.+.|--
T Consensus       320 ~~~~~i~~---------~~~~~~~v~G~~~l~~l~~~l~~  350 (408)
T TIGR03520       320 DEDLIYSK---------IDDNNYVFEGKTSLKDFYKILKL  350 (408)
T ss_pred             cCccceEE---------eCCCeEEEEeccCHHHHHHHhCC
Confidence            11111211         11255778889999999888743

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.33  E-value=3.7e-11  Score=98.00  Aligned_cols=106  Identities=13%  Similarity=0.304  Sum_probs=92.7

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~  295 (444)
                      ++..+.++.++.+++..|.++++.++||+|++ ++++|+++..|+......           ..++.+    +|.. .+.
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~-----------~~~v~~----~~~~-~~~   65 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYKE-----------AKSLED----IMLE-DVF   65 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhhc-----------CCcHhH----hhcC-Cce
Confidence            47789999999999999999999999999986 899999999999875421           235677    6765 789


Q ss_pred             EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      ++.+++++.+++..|.+.+.+.+||+++ +|+++|++|.+|+++
T Consensus        66 ~v~~~~~~~~~~~~~~~~~~~~~~vv~~-~g~~~Gvit~~~l~~  108 (109)
T cd04583          66 TVQPDASLRDVLGLVLKRGPKYVPVVDE-DGKLVGLITRSSLVD  108 (109)
T ss_pred             EECCCCcHHHHHHHHHHcCCceeeEECC-CCeEEEEEehHHhhc
Confidence            9999999999999999999999999997 789999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=3.1e-11  Score=99.29  Aligned_cols=110  Identities=24%  Similarity=0.297  Sum_probs=94.1

Q ss_pred             ceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCceE
Q 013373          217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT  296 (444)
Q Consensus       217 ~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~~  296 (444)
                      +..+.+++++.++++.|.+.+.+.+||+|++ ++++|+++..|+.+.+....      .+...++.+    +|.. ++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~------~~~~~~i~~----~~~~-~~~~   70 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESE------ELKDAKVRE----VMNS-PVIT   70 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhh------hhcCCcHHH----hccC-CceE
Confidence            6788999999999999999999999999986 89999999999987543321      113456777    6765 7899


Q ss_pred             ecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          297 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       297 v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      +.+++++.++++.|.+++...+||+++ +|+++|+++..|+++
T Consensus        71 v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~g~~~Gvvt~~dl~~  112 (113)
T cd04615          71 IDANDSIAKARWLMSNNNISRLPVLDD-KGKVGGIVTEDDILR  112 (113)
T ss_pred             ECCCCcHHHHHHHHHHcCCCeeeEECC-CCeEEEEEEHHHhhc
Confidence            999999999999999999999999997 789999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.32  E-value=2.5e-11  Score=99.91  Aligned_cols=112  Identities=26%  Similarity=0.400  Sum_probs=96.1

Q ss_pred             CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCc
Q 013373          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  294 (444)
Q Consensus       215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~  294 (444)
                      .++.++.+++++.++++.|.+.+.+.+||+|++ ++++|+++..++.+.+.....      ....++.+    +|.. ++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~------~~~~~v~~----~~~~-~~   69 (114)
T cd04604           2 DALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLD------ILTLPVAD----VMTR-NP   69 (114)
T ss_pred             CcccccCCCCcHHHHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCc------cccCCHHH----hhcc-CC
Confidence            357788999999999999988889999999987 899999999999987764321      12346788    6776 78


Q ss_pred             eEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       295 ~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      .++.+++++.++++.|..++.+.+||+++ +++++|+++..|+++
T Consensus        70 ~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~iG~it~~di~~  113 (114)
T cd04604          70 KTIDPDALAAEALELMEENKITALPVVDD-NGRPVGVLHIHDLLR  113 (114)
T ss_pred             eEECCCCcHHHHHHHHHHcCCCEEEEECC-CCCEEEEEEHHHhhc
Confidence            89999999999999999999999999997 799999999999974

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=4.3e-11  Score=103.41  Aligned_cols=112  Identities=30%  Similarity=0.493  Sum_probs=94.0

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccc-----------------------
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSN-----------------------  349 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~-----------------------  349 (444)
                      +++++.+++++.++++.|.+++++.+||+|+  ++++|+++..|+++++........                       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEET   79 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHH
Confidence            5788999999999999999999999999994  899999999999887653211000                       


Q ss_pred             ------cccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          350 ------FRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       350 ------~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                            ....++.++|..            ++.++.+++++.+++..|.+.+.+++||+++ + +++|+||..|++.
T Consensus        80 ~~~~~~~~~~~v~~~~~~------------~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~-~~~Gvvt~~dl~~  142 (143)
T cd04634          80 KRALTDAGKMKVRDIMTK------------KVITISPDASIEDAAELMVRHKIKRLPVVED-G-RLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHHhcCCHHHHcCC------------CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-C-EEEEEEEHHHhhc
Confidence                  123467777763            7899999999999999999999999999998 6 9999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=2.4e-11  Score=97.49  Aligned_cols=94  Identities=19%  Similarity=0.384  Sum_probs=84.3

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~  295 (444)
                      +++.+.+++++.+|++.|.+++++.+||+|++ +++.|+++..|+....                            .+.
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~----------------------------~~~   52 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKS----------------------------EVV   52 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCC----------------------------CcE
Confidence            47789999999999999999999999999976 8999999999986411                            267


Q ss_pred             EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      ++.+++++.++++.|.+++.+.+||+++ +++++|++|.+|+++
T Consensus        53 ~v~~~~~l~~a~~~m~~~~~~~lpVv~~-~~~~~Giit~~di~~   95 (96)
T cd04614          53 TATKRTTVSECAQKMKRNRIEQIPIING-NDKLIGLLRDHDLLK   95 (96)
T ss_pred             EecCCCCHHHHHHHHHHhCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence            8899999999999999999999999997 689999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.32  E-value=3.8e-11  Score=97.60  Aligned_cols=104  Identities=18%  Similarity=0.305  Sum_probs=90.3

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~  295 (444)
                      ++.++.++.++.+|++.|.+++.+.+||+|++ |+++|+++..|+.+...             .++.+    +|.+ .+.
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~~-------------~~~~~----~~~~-~~~   62 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASG-------------GCCGD----HAEP-FKV   62 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhcc-------------cchhh----hccc-CCE
Confidence            36788999999999999999999999999876 89999999999976421             23566    6765 678


Q ss_pred             EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      .+.+++++.++++.|.+++...+||+++ +++++|+|+.+|++.
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~~l~~  105 (106)
T cd04582          63 TVSVDDDLRIVLSRMFAHDMSWLPCVDE-DGRYVGEVTQRSIAD  105 (106)
T ss_pred             EECCCCCHHHHHHHHHHCCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence            8999999999999999999999999997 789999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=2.6e-11  Score=102.32  Aligned_cols=118  Identities=23%  Similarity=0.368  Sum_probs=94.8

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCc-------ccccccCcccccccCC
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW-------FDIIASQPISDLGLPF  288 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~-------~~~~~~~~v~~l~l~i  288 (444)
                      ++..+.+++++.+|+++|.+.+.+.+||+|++ ++++|++|..|+.+.+........       .......++.+    +
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~   76 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYD----A   76 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHH----H
Confidence            46788999999999999999999999999987 899999999999876533210000       01123456777    6


Q ss_pred             CCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeC-CCCeEEEEEeHHHHHH
Q 013373          289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEG-QQKKIVGNVSIRDIRH  339 (444)
Q Consensus       289 m~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~-~~~~lvGiIt~~Dll~  339 (444)
                      |.. +++++.++.++.++++.|.+++...+||++. ++++++|+||.+|+++
T Consensus        77 ~~~-~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          77 MSS-PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             hcC-CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            775 7899999999999999999999999999852 2689999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=2.3e-11  Score=100.22  Aligned_cols=112  Identities=20%  Similarity=0.334  Sum_probs=94.2

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~  295 (444)
                      ++.++.+++++.++++.|.+++.+.+||+|++ ++++|+++..++.+.+......    .....++.+    +|.. ++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~----~~~~~~v~~----~~~~-~~~   71 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYH----CDGVATVRD----IMTT-EVL   71 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhc----cCCCccHHH----Hhcc-Cce
Confidence            46788999999999999998899999999987 7999999999998866532100    012456777    6775 788


Q ss_pred             EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      ++.+++++.++++.|.+++.+.+||+++  |+++|++|.+|+++
T Consensus        72 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~  113 (114)
T cd04629          72 TVSPDDSIVDLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR  113 (114)
T ss_pred             EECCCCcHHHHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence            9999999999999999999999999994  89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.31  E-value=2.4e-11  Score=99.28  Aligned_cols=106  Identities=19%  Similarity=0.230  Sum_probs=93.1

Q ss_pred             CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCc
Q 013373          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  294 (444)
Q Consensus       215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~  294 (444)
                      .++.++.+++++.+++..|.+++.+.+||+|.+ ++++|+++..++....            ...++.+    +|.. ++
T Consensus         2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~------------~~~~v~~----~~~~-~~   63 (108)
T cd04596           2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGKD------------PDTTIEK----VMTK-NP   63 (108)
T ss_pred             CccEEeCCCCCHHHHHHHHHHcCCCceeEECCC-CeEEEEecHHHHhccc------------ccccHHH----HhcC-CC
Confidence            358899999999999999999999999999976 8999999999996421            2346778    6765 78


Q ss_pred             eEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       295 ~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      .++.+++++.++++.|.+++...+||+++ +|+++|+++..|+++
T Consensus        64 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~di~~  107 (108)
T cd04596          64 ITVNPKTSVASVAHMMIWEGIEMLPVVDD-NKKLLGIISRQDVLK  107 (108)
T ss_pred             eEECCCCCHHHHHHHHHHcCCCeeeEEcC-CCCEEEEEEHHHhhc
Confidence            99999999999999999999999999997 789999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=3.8e-11  Score=98.52  Aligned_cols=109  Identities=22%  Similarity=0.359  Sum_probs=93.2

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~  295 (444)
                      ++..+.+++++.++++.|.+++.+++||+|++ +++.|+++..|+..+.....       ....++.+    +|.. ++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~-------~~~~~v~~----~~~~-~~~   68 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFES-------FLEKKVFN----IVSQ-DVF   68 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhcc-------cccCcHHH----HhcC-CcE
Confidence            46789999999999999999999999999986 89999999999987654221       02346777    6765 788


Q ss_pred             EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      ++.+++++.++++.|.+++...+||+++  ++++|+||..|++.
T Consensus        69 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~  110 (111)
T cd04626          69 YVNEEDTIDEALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD  110 (111)
T ss_pred             EEcCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence            9999999999999999999999999994  88999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=3.5e-11  Score=102.19  Aligned_cols=116  Identities=22%  Similarity=0.418  Sum_probs=94.9

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCc--------------ccccccCcc
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW--------------FDIIASQPI  281 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~--------------~~~~~~~~v  281 (444)
                      ++.++.+++++.++++.|.+++.+++||+|++ ++++|+++..|+.+++........              ...+...++
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKV   80 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCH
Confidence            47789999999999999999999999999987 899999999999987754321110              001112266


Q ss_pred             cccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       282 ~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      .+    +|.. ++..+.+++++.++++.|.+.+.+.+||+++  |+++|++|.+|+++
T Consensus        81 ~~----~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~  131 (132)
T cd04636          81 EE----IMTK-KVITVDEDTTIEDVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR  131 (132)
T ss_pred             HH----hccC-CceEECCCCcHHHHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence            67    5765 7899999999999999999999999999994  89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.30  E-value=7.7e-11  Score=97.40  Aligned_cols=112  Identities=29%  Similarity=0.547  Sum_probs=97.0

Q ss_pred             CCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCC
Q 013373          288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP  367 (444)
Q Consensus       288 im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~  367 (444)
                      .|.. ++.++.++.++.++...|.++++..+||++  .++++|++|.+|+++.+.....    ...++.++|..      
T Consensus         4 ~~~~-~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~--~~~l~Giit~~di~~~~~~~~~----~~~~v~~v~~~------   70 (117)
T COG0517           4 IMTK-DVITVKPDTSVRDALLLMSENGVSAVPVVD--DGKLVGIITERDILRALAAGGK----RLLPVKEVMTK------   70 (117)
T ss_pred             cccC-CCEEECCCCcHHHHHHHHHHcCCCEEEEee--CCEEEEEEEHHHHHHHHhccCC----ccccHHHhccC------
Confidence            3444 789999999999999999999999999998  4589999999999999764221    11168999984      


Q ss_pred             CCCCCCCCeEecCCCCHHHHHHHHHh-cCCCEEEEEeCC-CCeEEEEEeHHHHH
Q 013373          368 DSGKVNPPITCKLESTLGSVIHSLAS-KSVHRIYVVAGE-EAEVVGVITLRDVI  419 (444)
Q Consensus       368 ~~~~~~~~~~v~~~~tl~~a~~~m~~-~~~~~l~VVd~~-~~~lvGvIT~~DIl  419 (444)
                            +++++.++.++.++++.|.+ ++++++||++++ + +++|++|.+|++
T Consensus        71 ------~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~-~lvGivt~~di~  117 (117)
T COG0517          71 ------PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGG-KLVGIITLSDIL  117 (117)
T ss_pred             ------CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCC-eEEEEEEHHHcC
Confidence                  88999999999999999999 799999999986 4 999999999974

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=6.4e-11  Score=96.33  Aligned_cols=111  Identities=28%  Similarity=0.488  Sum_probs=94.6

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.++..++++.++.+.|..++.+.+||+++ +++++|+++.+|++..+.....   .....+.++|..           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~G~v~~~~l~~~~~~~~~---~~~~~~~~~~~~-----------   66 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD-DGRLVGIVTERDLLRALAEGGL---DPLVTVGDVMTR-----------   66 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECC-CCCEEEEEeHHHHHHHHHhccC---CccccHHHHhcC-----------
Confidence            5678899999999999999989999999997 7899999999999987653211   011126777764           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                       ++.++.+++++.++++.|.+.+.+.+||+|+++ +++|+++..|+++
T Consensus        67 -~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~G~i~~~dl~~  112 (113)
T cd02205          67 -DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEG-RLVGIVTRSDILR  112 (113)
T ss_pred             -CceecCCCcCHHHHHHHHHHcCCCEEEEEcCCC-cEEEEEEHHHhhc
Confidence             788999999999999999999999999999987 9999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.30  E-value=4.8e-11  Score=99.15  Aligned_cols=113  Identities=17%  Similarity=0.331  Sum_probs=92.0

Q ss_pred             CceEecCCCcHHHHHHHHHHcC-CCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNN-IGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK  371 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~-~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~  371 (444)
                      ++.++.+++++.++++.|...+ ++.+||+|+  |+++|+++..|++.++............++.++|..          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~----------   69 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDP----------   69 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCC----------
Confidence            5678899999999999998887 889999995  899999999999876542100001134578999974          


Q ss_pred             CCCCeEecCCCCHHHHHHHHHhcCCC---EEEEEeCCCCeEEEEEeHHHHHH
Q 013373          372 VNPPITCKLESTLGSVIHSLASKSVH---RIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       372 ~~~~~~v~~~~tl~~a~~~m~~~~~~---~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                        ++.++.+++++.+++..|.+++..   ..+||++++ +++|+||..|+++
T Consensus        70 --~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~-~~~Gvvs~~di~~  118 (119)
T cd04598          70 --DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEG-RYLGIGTVKDLLR  118 (119)
T ss_pred             --CcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCC-eEEEEEEHHHHhc
Confidence              789999999999999999988764   446888887 9999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.30  E-value=4.4e-11  Score=123.23  Aligned_cols=116  Identities=14%  Similarity=0.167  Sum_probs=99.9

Q ss_pred             CCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCC--CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCC
Q 013373          288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ--QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPT  365 (444)
Q Consensus       288 im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~--~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~  365 (444)
                      .|.. +++++++++++.+++++|.+++++.+||+|+.  +++++|+++.+|+....        ....++.++|++.   
T Consensus       101 g~i~-dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~--------~~~~~V~diMt~~---  168 (495)
T PTZ00314        101 GFIM-DPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK--------DKSTPVSEVMTPR---  168 (495)
T ss_pred             cccc-CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc--------cCCCCHHHhhCCc---
Confidence            3444 78999999999999999999999999999862  27999999999997431        1256899999731   


Q ss_pred             CCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhH
Q 013373          366 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI  423 (444)
Q Consensus       366 ~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~  423 (444)
                             .+++++++++++.+++++|.+++.+.+||||+++ +++|+||++||++...
T Consensus       169 -------~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g-~liGIIT~~DIl~~~~  218 (495)
T PTZ00314        169 -------EKLVVGNTPISLEEANEVLRESRKGKLPIVNDNG-ELVALVSRSDLKKNRG  218 (495)
T ss_pred             -------CCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCC-cEEEEEEehHhhhccc
Confidence                   2689999999999999999999999999999988 9999999999998765

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.29  E-value=3.4e-11  Score=123.89  Aligned_cols=111  Identities=17%  Similarity=0.214  Sum_probs=96.7

Q ss_pred             ceEecCCCcHHHHHHHHHHcCCCeEeEEeCC--CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013373          294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQ--QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK  371 (444)
Q Consensus       294 ~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~--~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~  371 (444)
                      ..++++++++.++++.|.+++++.+||+|+.  +++++|+||.+|+++...       ..+.++.++|+..         
T Consensus       107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~-------~~~~~V~dIMt~~---------  170 (502)
T PRK07107        107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRM-------SLDTKVKDFMTPF---------  170 (502)
T ss_pred             CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcccc-------CCCCCHHHHhCCC---------
Confidence            4689999999999999999999999999952  479999999999964311       2356899999831         


Q ss_pred             CCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013373          372 VNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF  422 (444)
Q Consensus       372 ~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l  422 (444)
                       .+++++++++++.+|+++|.+++++++||||+++ +++|+||++||++..
T Consensus       171 -~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g-~LvGIIT~~Dilk~~  219 (502)
T PRK07107        171 -EKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNG-NLVYLVFRKDYDSHK  219 (502)
T ss_pred             -CCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEhHHHHhcc
Confidence             2678999999999999999999999999999887 999999999999965

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.29  E-value=6.7e-11  Score=96.78  Aligned_cols=108  Identities=19%  Similarity=0.413  Sum_probs=93.3

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~  295 (444)
                      +++++.+++++.++++.|.+++++++||+++  +++.|+++..|+++......        ...++.+    +|.. ++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~--------~~~~v~~----~~~~-~~~   66 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGL--------ELAKVKD----VMTK-DVI   66 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccc--------cccCHHH----HhcC-Cce
Confidence            4778999999999999999999999999987  69999999999988654331        1256777    5665 789


Q ss_pred             EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      ++.+++++.++++.|.+.+...+||+++ +++++|+++..|+++
T Consensus        67 ~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~  109 (110)
T cd04588          67 TIDEDEQLYDAIRLMNKHNVGRLIVTDD-EGRPVGIITRTDILR  109 (110)
T ss_pred             EECCCCCHHHHHHHHHhcCCCEEEEECC-CCCEEEEEEhHHhhc
Confidence            9999999999999999999999999987 689999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.29  E-value=2.4e-11  Score=121.56  Aligned_cols=126  Identities=20%  Similarity=0.314  Sum_probs=111.0

Q ss_pred             CCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCc
Q 013373          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP  280 (444)
Q Consensus       201 ~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~  280 (444)
                      -.+++.+++.    .+.+++++.+++.+|...|.++|++.+.+++++ +...||+|.+|+...+...- ..     ...+
T Consensus       147 ~~trv~~~~~----~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~-~~~~GIvT~~dl~~~v~~~g-~~-----~~~~  215 (610)
T COG2905         147 ILTRVGEVKT----LPAVTVSPQASIQDAARKMKDEGVSSLVVLDDS-GPLLGIVTRKDLRSRVIADG-RS-----KTQK  215 (610)
T ss_pred             HHHHHHHHhc----CCCcccCccCcHHHHHHHHHhcCCCeEEEEcCC-CCccceeehHHHHHHHHhcC-CC-----cccc
Confidence            3456777777    789999999999999999999999999999987 89999999999988765421 11     4679


Q ss_pred             ccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCC
Q 013373          281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (444)
Q Consensus       281 v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~  344 (444)
                      |++    +|+. ++.++..++-+.+|+-.|..++++++||++  +|+++|++|.+||+.....+
T Consensus       216 V~e----vmT~-p~~svd~~~~~feAml~m~r~~I~hl~V~e--~gq~~Gilt~~dIl~l~s~~  272 (610)
T COG2905         216 VSE----VMTS-PVISVDRGDFLFEAMLMMLRNRIKHLPVTE--DGQPLGILTLTDILRLFSQN  272 (610)
T ss_pred             hhh----hhcc-CceeecCcchHHHHHHHHHHhCCceeeeec--CCeeeEEeeHHHHHHhhCCC
Confidence            999    8997 999999999999999999999999999999  69999999999999998753

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=6e-11  Score=97.98  Aligned_cols=110  Identities=24%  Similarity=0.385  Sum_probs=90.5

Q ss_pred             CceEeeCCCCHHHHHHHHHhCC-CCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCc
Q 013373          216 PFLPVATDDSMLSVLLLLSKYR-LRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  294 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~-i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~  294 (444)
                      ++..+.++.++.++++.|.+++ ...+||.|.  ++++|+++..|+.+.+.....      ....++.+    +|.. ++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~------~~~~~i~~----~~~~-~~   68 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTAIGKD------LSDLPIGE----VMTQ-PV   68 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHhcCCC------ccccCHHH----hcCC-Cc
Confidence            3667899999999999998888 667777774  799999999999887653211      12356777    6765 78


Q ss_pred             eEecCC--CcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          295 ITIQSN--ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       295 ~~v~~~--~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      .++.++  +++.++++.|.+++...+||+|+ +|+++|++|.+|+++
T Consensus        69 ~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~-~~~~~Gvit~~dl~~  114 (115)
T cd04620          69 VTLQESEIQDIFTALSLFRQHQIRHLPVLDD-QGQLIGLVTAESIRQ  114 (115)
T ss_pred             EEEecccccCHHHHHHHHHHhCCceEEEEcC-CCCEEEEEEhHHhhc
Confidence            888877  68999999999999999999997 799999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.28  E-value=3.6e-11  Score=127.41  Aligned_cols=127  Identities=12%  Similarity=0.224  Sum_probs=107.6

Q ss_pred             CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013373          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  279 (444)
Q Consensus       200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~  279 (444)
                      +...+++|+|.    ++..++++++++.++++.|.+++.+.+||+|++ ++++|+++.+|+.+.+.....      ....
T Consensus       444 L~~~~V~dim~----~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~------~~~~  512 (574)
T PRK01862        444 LRTTQMRELIQ----PAQTVVPPTASVADMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRD------TTDK  512 (574)
T ss_pred             HhhCcHHHHhc----CCCceeCCCCCHHHHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhcccc------cccc
Confidence            45578999998    568889999999999999999999999999987 899999999999886543211      1235


Q ss_pred             cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCC-CeEEEEEeHHHHHHHhc
Q 013373          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~-~~lvGiIt~~Dll~~l~  342 (444)
                      ++.+    +|++ ++.++++++++.++++.|.+++.+.+||+|+++ ++++|+||++|+++.+.
T Consensus       513 ~v~d----im~~-~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~  571 (574)
T PRK01862        513 TAAD----YAHT-PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR  571 (574)
T ss_pred             hHHH----hccC-CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence            6788    7876 789999999999999999999999999998722 58999999999998865

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.28  E-value=6.5e-11  Score=97.29  Aligned_cols=112  Identities=16%  Similarity=0.284  Sum_probs=94.7

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~  295 (444)
                      ++.++.+++++.++++.|.++++..+||+|.+ ++++|+++..|+.+++.....      ....++.+    +|.. ++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~------~~~~~v~~----~~~~-~~~   69 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSL------YDLVVASD----IMTK-PPV   69 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccc------cccEEHHH----hccC-CCc
Confidence            46789999999999999999999999999987 799999999999887653311      01256777    6776 789


Q ss_pred             EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      ++.+++++.++++.|...+.+.+||+++..++++|+++.+|++.
T Consensus        70 ~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          70 VVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             EEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            99999999999999999999999999831378999999999864

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.28  E-value=9.6e-11  Score=95.86  Aligned_cols=109  Identities=18%  Similarity=0.350  Sum_probs=94.0

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~  295 (444)
                      ++..+.+++++.++++.|.+++.+.+||+++  +++.|+++..|+.++.....  .     ...++.+    +|.. ++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~--~-----~~~~v~~----~~~~-~~~   67 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGP--D-----LQTPVGE----VMSS-PLL   67 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCC--C-----CCcCHHH----hcCC-Cce
Confidence            3678899999999999999888999999986  79999999999998775431  0     2456777    6765 789


Q ss_pred             EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      ++.+++++.++++.|.+.+.+.+||+++ +|+++|+++.+|+++
T Consensus        68 ~~~~~~~l~~~l~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~di~~  110 (111)
T cd04611          68 TVPADTSLYDARQLMREHGIRHLVVVDD-DGELLGLLSQTDLLQ  110 (111)
T ss_pred             EECCCCCHHHHHHHHHHcCCeEEEEECC-CCcEEEEEEhHHhhc
Confidence            9999999999999999999999999997 789999999999864

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.28  E-value=7.8e-11  Score=97.97  Aligned_cols=116  Identities=22%  Similarity=0.364  Sum_probs=94.7

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCccc----ccccCcccccccCCCCC
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD----IIASQPISDLGLPFMSS  291 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~----~~~~~~v~~l~l~im~~  291 (444)
                      ++.++.++.++.++++.|.+.++..+||+|+  ++++|+++..|+.+............    .....++.+    +|..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~   75 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSD----IMTR   75 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHH----hccC
Confidence            4678999999999999999999999999997  79999999999988764321100000    012345666    6765


Q ss_pred             CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       292 ~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                       ++.++.+++++.+++..|.+++.+.+||+++ +|+++|++|..|+++
T Consensus        76 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvvt~~di~~  121 (122)
T cd04585          76 -DPITVSPDASVEEAAELMLERKISGLPVVDD-QGRLVGIITESDLFR  121 (122)
T ss_pred             -CCeEeCCCCcHHHHHHHHHHcCCCceeEECC-CCcEEEEEEHHHhhh
Confidence             7899999999999999999999999999997 799999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.28  E-value=8.4e-11  Score=96.38  Aligned_cols=108  Identities=14%  Similarity=0.264  Sum_probs=91.9

Q ss_pred             ceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCceE
Q 013373          217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT  296 (444)
Q Consensus       217 ~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~~  296 (444)
                      ++++.+++++.+|++.|.++++..+||++.+.++++|+++..++.+......  .      ..++.+    +| . ++.+
T Consensus         3 ~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~--~------~~~~~~----~~-~-~~~~   68 (111)
T cd04590           3 IVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGE--E------DLDLRD----LL-R-PPLF   68 (111)
T ss_pred             eEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCC--C------cCCHHH----Hh-c-CCee
Confidence            6789999999999999999999999999875368999999999998775431  1      134555    44 3 6789


Q ss_pred             ecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          297 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       297 v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      +.+++++.++++.|.+++.+.+||+++ +++++|++|.+|++.
T Consensus        69 v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~  110 (111)
T cd04590          69 VPESTPLDDLLEEMRKERSHMAIVVDE-YGGTAGLVTLEDILE  110 (111)
T ss_pred             cCCCCcHHHHHHHHHhcCCcEEEEEEC-CCCEEEEeEHHHhhc
Confidence            999999999999999999999999997 799999999999863

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=1e-10  Score=96.03  Aligned_cols=110  Identities=16%  Similarity=0.309  Sum_probs=91.3

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~  295 (444)
                      .+.++.+++++.++++.|.+++...++|.++  ++++|+++..|+.+.+.... ..    ....++.+    +|.. ++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~-~~----~~~~~v~~----~~~~-~~~   69 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVMER--GELVGLLTFREVLQAMAQHG-AG----VLDTTVRA----IMNP-EPI   69 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHHHHHHHhcC-Cc----hhcCCHHH----HhCC-CCe
Confidence            3678899999999999998888877777754  79999999999998765321 01    12356888    6765 788


Q ss_pred             EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      ++.+++++.++++.|.+++...+||++  +++++|++|.+|+++
T Consensus        70 ~v~~~~~l~~a~~~m~~~~~~~l~Vv~--~~~~~Gvvt~~dl~~  111 (112)
T cd04625          70 VASPDDSIDEVRRLMVERHLRYLPVLD--GGTLLGVISFHDVAK  111 (112)
T ss_pred             EECCCCCHHHHHHHHHHcCCCeeeEEE--CCEEEEEEEHHHhhc
Confidence            999999999999999999999999998  589999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.27  E-value=4.4e-11  Score=102.02  Aligned_cols=117  Identities=19%  Similarity=0.373  Sum_probs=95.3

Q ss_pred             CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCC---CCccc-------------cccc
Q 013373          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG---RDWFD-------------IIAS  278 (444)
Q Consensus       215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~---~~~~~-------------~~~~  278 (444)
                      .++.++.+++++.++++.|.+++.+++||+|++ ++++|+++..|+.+.+.....   ..+..             ....
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~-~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDD-GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG   80 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCC-CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence            457889999999999999999999999999976 899999999999876543210   00000             1123


Q ss_pred             CcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       279 ~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      .++.+    +|.. ++.++.+++++.++++.|.+++.+.+||+|  +|+++|+||++|+++
T Consensus        81 ~~v~~----~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd--~g~~~Gvit~~di~~  134 (135)
T cd04586          81 RKVAD----VMTR-PVVTVGEDTPLAEVAELMEEHRIKRVPVVR--GGRLVGIVSRADLLR  134 (135)
T ss_pred             CCHHH----HhCC-CceEeCCCCcHHHHHHHHHHcCCCccCEec--CCEEEEEEEhHhhhc
Confidence            46777    6765 789999999999999999999999999999  689999999999864

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.27  E-value=4e-11  Score=114.94  Aligned_cols=113  Identities=26%  Similarity=0.402  Sum_probs=98.4

Q ss_pred             CcccccccCCCCCCC-ceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHH
Q 013373          279 QPISDLGLPFMSSDE-VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRD  357 (444)
Q Consensus       279 ~~v~~l~l~im~~~~-~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~  357 (444)
                      .++.+    +|.+ + +.++.+++++.++++.|.+.+++.+||+|+ +++++|+++..|+++.+....    ....++.+
T Consensus       155 ~~v~~----im~~-~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~-~g~~~Givt~~dl~~~~~~~~----~~~~~v~~  224 (268)
T TIGR00393       155 VKVKD----LMQT-TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE-NNQLVGVFTDGDLRRALLGGG----SLKSEVRD  224 (268)
T ss_pred             hhHHH----HhCC-CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC-CCCEEEEEEcHHHHHHHhcCC----cccCcHHH
Confidence            46777    6876 6 889999999999999999999999999998 799999999999988754211    13567999


Q ss_pred             HhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEe
Q 013373          358 FMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVIT  414 (444)
Q Consensus       358 ~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT  414 (444)
                      +|..            ++.++.+++++.++++.|.+++.+++||+|+++ +++|+|+
T Consensus       225 im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~l~GvI~  268 (268)
T TIGR00393       225 FMTL------------GPKTFKLDALLLEALEFLERRKITSLVVVDDHN-KVLGVLH  268 (268)
T ss_pred             hCCC------------CCeEECCCCcHHHHHHHHHHcCCcEEEEECCCC-eEEEEEC
Confidence            9974            788999999999999999999999999999887 9999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.27  E-value=1.2e-10  Score=95.39  Aligned_cols=108  Identities=26%  Similarity=0.469  Sum_probs=93.7

Q ss_pred             CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCc
Q 013373          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  294 (444)
Q Consensus       215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~  294 (444)
                      .++.++.++.++.++.+.|.+++..++||+|.  ++++|+++..|+.+.+....        ...++.+    +|.. ++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~--------~~~~~~~----~~~~-~~   66 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGL--------GHAPVKD----YMST-DV   66 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhccc--------ccCcHHH----HhcC-CC
Confidence            46788999999999999999889999999997  79999999999987663221        3456778    6775 78


Q ss_pred             eEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       295 ~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      .++.+++++.++++.|.+++.+.+||++  +|+++|++|..|+++
T Consensus        67 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvvt~~di~~  109 (110)
T cd04595          67 VTVPPDTPLSEVQELMVEHDIGRVPVVE--DGRLVGIVTRTDLLR  109 (110)
T ss_pred             EEECCCCcHHHHHHHHHHcCCCeeEEEe--CCEEEEEEEhHHhhc
Confidence            9999999999999999999999999998  689999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.27  E-value=8.3e-11  Score=95.95  Aligned_cols=101  Identities=20%  Similarity=0.373  Sum_probs=87.4

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCC--CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQ--QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSG  370 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~--~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~  370 (444)
                      ....+.+++++.++.+.|.+.+...+||+++.  +++++|+++.+|+.+....              +|..         
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~--------------~m~~---------   59 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN--------------YIDP---------   59 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH--------------hccC---------
Confidence            46788999999999999999888899999862  3889999999999876431              5653         


Q ss_pred             CCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373          371 KVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  421 (444)
Q Consensus       371 ~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~  421 (444)
                         ++.++++++++.++++.|.+++.+.+||++ ++ +++|+||++||+++
T Consensus        60 ---~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~-~~~Gvvt~~dl~~~  105 (105)
T cd04591          60 ---SPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EG-RLVGIITRKDLLKA  105 (105)
T ss_pred             ---CCceECCCCcHHHHHHHHHHcCCCEEEEEE-CC-eEEEEEEhhhhhcC
Confidence               788999999999999999999999999995 45 99999999999863

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=5e-11  Score=100.44  Aligned_cols=112  Identities=17%  Similarity=0.212  Sum_probs=89.2

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHH-----hhcCCCCCcccccccCcccccccCCCC
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG-----LEGCKGRDWFDIIASQPISDLGLPFMS  290 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~-----l~~~~~~~~~~~~~~~~v~~l~l~im~  290 (444)
                      +++++.+++++.++++.|.+++.+.+||+|++ ++++|+++..|+.+.     +.... .    .....++++    +|.
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~-~----~~~~~~v~~----im~   71 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGG-I----SRSELTVAD----VMT   71 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcC-C----CchheEHHH----hcC
Confidence            36789999999999999998999999999976 799999999999852     22110 0    013456777    676


Q ss_pred             CCCceE--e----cCCCcHHHHHHHHHHcCCCeEeEEeCCC-CeEEEEEeHHHHHH
Q 013373          291 SDEVIT--I----QSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRH  339 (444)
Q Consensus       291 ~~~~~~--v----~~~~sl~ea~~~m~~~~~~~lpVvd~~~-~~lvGiIt~~Dll~  339 (444)
                      . +...  +    .+++++.++++.|.+++.+.+||+|+ + |+++|+||.+|+++
T Consensus        72 ~-~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~-~~~~~~G~it~~di~~  125 (126)
T cd04640          72 P-KEDLKALDLEELENASVGDVVETLKASGRQHALVVDR-EHHQIRGIISTSDIAR  125 (126)
T ss_pred             c-hhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC-CCCEEEEEEeHHHHhh
Confidence            4 4333  3    36889999999999999999999997 5 78999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.26  E-value=1.1e-10  Score=119.28  Aligned_cols=119  Identities=15%  Similarity=0.206  Sum_probs=102.5

Q ss_pred             CCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCc
Q 013373          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP  280 (444)
Q Consensus       201 ~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~  280 (444)
                      ...++.++|.    .+++++.+++++.+++++|.+++++.+||+|+  ++++|+||..|+...       .     ...+
T Consensus        86 ~~VKv~eim~----~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~-------~-----~~~~  147 (475)
T TIGR01303        86 AFVKSRDLVL----DTPITLAPHDTVSDAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGV-------D-----RFTQ  147 (475)
T ss_pred             hhcchhhccc----cCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcC-------C-----CCCC
Confidence            3455667776    66899999999999999999999999999985  689999999998321       1     2357


Q ss_pred             ccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373          281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (444)
Q Consensus       281 v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~  343 (444)
                      +.+    +|+. +++++.+++++.+++++|.+++++.+||+|+ +++++|+||.+||++....
T Consensus       148 V~d----IMt~-~litv~~~~sL~eAl~lM~~~~i~~LPVVD~-~g~LvGIIT~~DLl~~~~~  204 (475)
T TIGR01303       148 VRD----IMST-DLVTAPADTEPRKAFDLLEHAPRDVAPLVDA-DGTLAGILTRTGALRATIY  204 (475)
T ss_pred             HHH----HccC-CceEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHhC
Confidence            888    7886 8999999999999999999999999999998 7999999999999987654

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.26  E-value=1.3e-10  Score=95.24  Aligned_cols=108  Identities=16%  Similarity=0.204  Sum_probs=92.4

Q ss_pred             ceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCceE
Q 013373          217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT  296 (444)
Q Consensus       217 ~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~~  296 (444)
                      ++.+.++.++.++++.|.+++...+||+|+  +++.|+++..|+.+.+.....      ....++.+    +|.. ++..
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~------~~~~~i~~----~~~~-~~~~   69 (111)
T cd04589           3 PLIVDASTSIRDAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGL------PSSTPVGE----IATF-PLIT   69 (111)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCC------CCCCCHHH----HhCC-CcEE
Confidence            678899999999999999999999999987  689999999999887643210      13456777    6765 7899


Q ss_pred             ecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          297 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       297 v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      +++++++.++++.|.+++...+||++  +++++|++|..|+++
T Consensus        70 v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~G~it~~dl~~  110 (111)
T cd04589          70 VDPDDFLFNALLLMTRHRIHRVVVRE--GGEVVGVLEQTDLLS  110 (111)
T ss_pred             ECCCCcHHHHHHHHHHhCccEEEEee--CCEEEEEEEhHHhhc
Confidence            99999999999999999999999998  589999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=6.5e-11  Score=98.81  Aligned_cols=117  Identities=21%  Similarity=0.334  Sum_probs=94.2

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCc---ccccccCcccccccCCCCCC
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW---FDIIASQPISDLGLPFMSSD  292 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~---~~~~~~~~v~~l~l~im~~~  292 (444)
                      +++++.+++++.++++.|.+++.+++||+|.+ ++++|+++..|+++..........   .......++.+    +|.. 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-   75 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKA-GELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEK----IMST-   75 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCC-CcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHH----HhcC-
Confidence            47789999999999999998999999999976 899999999999875321100000   00013446667    5665 


Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      ++.++.+++++.++++.|.+++.+.+||+++ +|+++|++|..|+++
T Consensus        76 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~g~~~Gvit~~dl~~  121 (122)
T cd04635          76 PVYSVTPDDSIATAVELMLEHDIGRLPVVNE-KDQLVGIVDRHDVLK  121 (122)
T ss_pred             CCeeECCCCCHHHHHHHHHHcCCCeeeEEcC-CCcEEEEEEhHHhhc
Confidence            7899999999999999999999999999997 799999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.26  E-value=1.2e-10  Score=95.46  Aligned_cols=109  Identities=20%  Similarity=0.362  Sum_probs=92.4

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~  295 (444)
                      ++.++.++.++.++.+.|.+++.+++||+|+  ++++|+++..++.+.+.... .     ....++.+    +|.. ++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~-~-----~~~~~i~~----~~~~-~~~   68 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEG-L-----DPDTPVSE----VMTA-PPI   68 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccC-C-----CccCCHHH----HhCC-CCe
Confidence            4678899999999999999999999999986  79999999999987554321 0     02356777    5665 789


Q ss_pred             EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      ++.+++++.++++.|.+++.+.+||+++  ++++|++|.+|+++
T Consensus        69 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~  110 (111)
T cd04800          69 TIPPDATVFEALLLMLERGIHHLPVVDD--GRLVGVISATDLLR  110 (111)
T ss_pred             EECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence            9999999999999999999999999984  89999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.26  E-value=9.4e-11  Score=96.34  Aligned_cols=111  Identities=17%  Similarity=0.271  Sum_probs=92.7

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~  295 (444)
                      ++..+.+++++.++++.|.+++.+.+||++.  ++++|+++..|++..+.... ..    ....++.+    +|.. ++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~-~~----~~~~~v~~----i~~~-~~~   69 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQG-LD----PESTLVER----VMTP-NPV   69 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcC-CC----cCcCCHHH----hcCC-CCe
Confidence            4678899999999999999899999999986  79999999999985443221 11    01256778    6765 788


Q ss_pred             EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      ++.+++++.++++.|.+++...+||+++ +++++|+++.+|++.
T Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~~Gvvs~~dl~~  112 (113)
T cd04587          70 CATSDTPVLEALHLMVQGKFRHLPVVDK-SGQVVGLLDVTKLTH  112 (113)
T ss_pred             EEcCCCCHHHHHHHHHHcCCCcccEECC-CCCEEEEEEHHHhcc
Confidence            9999999999999999999999999997 789999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=1.8e-10  Score=93.64  Aligned_cols=104  Identities=18%  Similarity=0.368  Sum_probs=90.6

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ++.++..+.++.+++..|.+.+++.+||+++ +++++|+++..+++...         ...++.++|..           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~g~v~~~~l~~~~---------~~~~~~~~~~~-----------   60 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKK-SGELVGIITRKDLLRNP---------EEEQLALLMTR-----------   60 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEHHHHHhcc---------ccchHHHHhcC-----------
Confidence            5678889999999999999999999999997 68999999999997531         12357788764           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                       ++.++.+++++.+++..|.+++.+.+||+|+ + +++|+||..|+++
T Consensus        61 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~-~~~G~it~~d~~~  105 (106)
T cd04638          61 -DPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-G-KLVGIVTVADIVR  105 (106)
T ss_pred             -CCceECCCCCHHHHHHHHHHcCCCEEEEEEC-C-EEEEEEEHHHhhc
Confidence             7889999999999999999999999999995 5 9999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.26  E-value=8.1e-11  Score=120.03  Aligned_cols=134  Identities=22%  Similarity=0.431  Sum_probs=113.7

Q ss_pred             cccCcccccccCCCCCC-CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCc
Q 013373          276 IASQPISDLGLPFMSSD-EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLT  354 (444)
Q Consensus       276 ~~~~~v~~l~l~im~~~-~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~  354 (444)
                      +.++++++    +|+++ ++..++.+.++.++.+.+.+++++++||+++..+.++|++..+|++....+...     ...
T Consensus       203 l~~~~v~e----iMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-----~~~  273 (429)
T COG1253         203 LDDRTVRE----IMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-----DLD  273 (429)
T ss_pred             cCCcEeee----EeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-----ccc
Confidence            35789999    78873 688899999999999999999999999999547899999999999988664211     011


Q ss_pred             HHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCccchh
Q 013373          355 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDN  432 (444)
Q Consensus       355 v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~~~~~  432 (444)
                      ....+             +++..++++.++.++++.|.+.+.|-..|+|+.| .+.|+||..||+..+++|..+.+++
T Consensus       274 ~~~~~-------------~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG-~~~GlVTleDIiEeIvGei~de~d~  337 (429)
T COG1253         274 LRVLV-------------RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYG-GVEGLVTLEDIIEEIVGEIPDEHDE  337 (429)
T ss_pred             hhhcc-------------cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCC-CeEEEeEHHHHHHHHhCCCcCcccc
Confidence            12222             2889999999999999999999999999999998 9999999999999999988877765

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.25  E-value=1.3e-10  Score=95.17  Aligned_cols=109  Identities=26%  Similarity=0.410  Sum_probs=92.8

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~  295 (444)
                      +++.+.+++++.++++.|.+.+.+++||+|+  ++++|+++..|+.+.......       ...++.+    +|.. ++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~-------~~~~~~~----~~~~-~~~   67 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGRE-------ATVLVGD----VMTR-DPV   67 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcc-------cccCHHH----hccC-CCe
Confidence            4778999999999999999888999999997  799999999999876643210       1134556    5665 789


Q ss_pred             EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      ++.+++++.++++.|.+++.+.+||+++ +++++|++|..|+++
T Consensus        68 ~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~  110 (111)
T cd04612          68 TASPDETLRDALKRMAERDIGRLPVVDD-SGRLVGIVSRSDLLR  110 (111)
T ss_pred             EECCCCCHHHHHHHHHhCCCCeeeEEcC-CCCEEEEEEHHHhhh
Confidence            9999999999999999999999999997 799999999999865

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.25  E-value=7.8e-11  Score=121.27  Aligned_cols=166  Identities=18%  Similarity=0.174  Sum_probs=121.2

Q ss_pred             CcchhhhhhHHhhhhhhccchhhhccCCCCCccccccccchhHHhhhccCCCCCCcHHHhhhhcCCCCceEeeCCCCHHH
Q 013373          149 GPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLS  228 (444)
Q Consensus       149 ~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~  228 (444)
                      .|...+.+.++. |.+.+-.+....+++--...   ....++.+.+        .+|.+++.... ....++.+++++.+
T Consensus        52 iP~~Satmdtvt-gdalAiala~~gG~g~Ih~n---~sie~qa~lV--------~kVk~~~~g~i-~~~~tV~pd~tl~e  118 (502)
T PRK07107         52 IPLVSAIMQSVS-DDNMAIALAREGGLSFIFGS---QSIESEAAMV--------RRVKNYKAGFV-VSDSNLTPDNTLAD  118 (502)
T ss_pred             CChHHHHHHHHh-hHHHHHHHHHcCCCeEeeCC---CCHHHHHHHH--------HHHHHHhcCCc-CCCCEeCCCCcHHH
Confidence            376666666555 78877777777776621111   0112222211        23555554211 22468999999999


Q ss_pred             HHHHHHhCCCCEEEEecCC--CCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCC-CCceEecCCCcHHH
Q 013373          229 VLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSS-DEVITIQSNELILE  305 (444)
Q Consensus       229 a~~~l~~~~i~~lpVvd~~--~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~-~~~~~v~~~~sl~e  305 (444)
                      |++.|.+++++.+||+|++  +++++|+||..|+.... .         ..+.++++    +|++ .+++++.+++++.+
T Consensus       119 Al~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~-~---------~~~~~V~d----IMt~~~~~itv~~d~~l~e  184 (502)
T PRK07107        119 VLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR-M---------SLDTKVKD----FMTPFEKLVTANEGTTLKE  184 (502)
T ss_pred             HHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc-c---------CCCCCHHH----HhCCCCCeEEECCCCcHHH
Confidence            9999999999999999962  37999999999985321 0         14568899    7874 26789999999999


Q ss_pred             HHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          306 AFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       306 a~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      |+++|.++++..+||+|+ +++++|+||.+|+++...
T Consensus       185 Al~lM~e~~i~~LPVVD~-~g~LvGIIT~~Dilk~~~  220 (502)
T PRK07107        185 ANDIIWDHKLNTLPIVDK-NGNLVYLVFRKDYDSHKE  220 (502)
T ss_pred             HHHHHHHcCCCEEEEEcC-CCeEEEEEEhHHHHhccc
Confidence            999999999999999997 789999999999988643

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=2.1e-10  Score=94.14  Aligned_cols=110  Identities=23%  Similarity=0.358  Sum_probs=92.2

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~  295 (444)
                      ++.++.+++++.++++.|.+.+.+.+||+|+  ++++|+++..|+.+.+......     ....++.+    +|.. ++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~-----~~~~~~~~----~~~~-~~~   69 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLK-----PREVPVGE----VMST-PLI   69 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCC-----cccCCHHH----hcCC-CcE
Confidence            4678899999999999999889999999996  4899999999999866432100     12346777    6765 788


Q ss_pred             EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      ++.+++++.++++.|.+++...+||+++ + +++|+|+.+|+++
T Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~Gvi~~~di~~  111 (112)
T cd04802          70 TIDPNASLNEAAKLMAKHGIKRLPVVDD-D-ELVGIVTTTDIVM  111 (112)
T ss_pred             EECCCCCHHHHHHHHHHcCCCeeEEeeC-C-EEEEEEEhhhhhc
Confidence            9999999999999999999999999996 4 9999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=1e-10  Score=97.59  Aligned_cols=116  Identities=18%  Similarity=0.322  Sum_probs=94.2

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCccc----ccccCcccccccCCCCC
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD----IIASQPISDLGLPFMSS  291 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~----~~~~~~v~~l~l~im~~  291 (444)
                      +++++.+++++.++++.|.++++.++||+|+  ++++|+++..++.+.+..........    .....++.+    +|..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~   75 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQ----IMTR   75 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHH----hhcC
Confidence            3678999999999999999999999999996  79999999999988664321000000    001235777    6765


Q ss_pred             CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       292 ~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                       ++.++.+++++.++++.|.+++...+||+++ +++++|+++..|+++
T Consensus        76 -~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~-~~~~~Gvit~~dll~  121 (122)
T cd04637          76 -DPITVSPDTPVDEASKLLLENSISCLPVVDE-NGQLIGIITWKDLLK  121 (122)
T ss_pred             -CCeeeCCCCcHHHHHHHHHHcCCCeEeEECC-CCCEEEEEEHHHhhh
Confidence             7899999999999999999999999999987 789999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.23  E-value=1.4e-10  Score=119.66  Aligned_cols=125  Identities=22%  Similarity=0.357  Sum_probs=102.9

Q ss_pred             ccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccccccc
Q 013373          273 FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ  352 (444)
Q Consensus       273 ~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~  352 (444)
                      +..+...++++    +|.+ ++.++.+++++.++++.|.+++++.+||+|+ +++++|+|+.+|+++.+.....   ...
T Consensus       329 ~~~l~~~~v~~----im~~-~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~---~~~  399 (454)
T TIGR01137       329 FDVLKNATVKD----LHLP-APVTVHPTETVGDAIEILREYGFDQLPVVTE-AGKVLGSVTLRELLSALFAGKA---NPD  399 (454)
T ss_pred             HHHhccCCHHH----hCcC-CCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHhccCC---CcC
Confidence            33355678888    7876 8999999999999999999999999999997 7899999999999986643211   124


Q ss_pred             CcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013373          353 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF  422 (444)
Q Consensus       353 ~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l  422 (444)
                      .++.++|..            ++.++++++++.++++.|.+++   .+||++++ +++|+||++||++.|
T Consensus       400 ~~v~~im~~------------~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g-~liGvvt~~dll~~l  453 (454)
T TIGR01137       400 DAVSKVMSK------------KFIQIGEGEKLSDLSKFLEKNS---SAIVTEEG-KPIGVVTKIDLLSFL  453 (454)
T ss_pred             CCHHHhcCC------------CCeEECCcCcHHHHHHHHHHCC---eeEEEECC-EEEEEEEHHHHHHhh
Confidence            579999974            7889999999999999998753   35565566 999999999999875

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.22  E-value=2e-10  Score=94.82  Aligned_cols=106  Identities=18%  Similarity=0.331  Sum_probs=88.8

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecC---CCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCC
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEP---GTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD  292 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~---~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~  292 (444)
                      ++..+.+++++.++++.|.+++...+||+|.   + ++++|+++..|+.....           ...++.+    +|.. 
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~-~~~~G~v~~~dl~~~~~-----------~~~~v~~----~~~~-   65 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSG-GKLLGIVTSRDIDFLTD-----------SETPLSE----VMTP-   65 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcC-CEEEEEEEhHHhhhhhc-----------cCCCHHH----hcCC-
Confidence            4678899999999999999889999999996   4 79999999999864211           1245777    6765 


Q ss_pred             CceEecC--CCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          293 EVITIQS--NELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       293 ~~~~v~~--~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      +..++..  ++++.++++.|.+++...+||+++ +++++|+||.+|+++
T Consensus        66 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~-~~~~~Gvit~~di~~  113 (114)
T cd04602          66 REVLVVAPTGITLEEANEILRESKKGKLPIVND-DGELVALVTRSDLKK  113 (114)
T ss_pred             CceEEECCCCCCHHHHHHHHHhcCCCceeEECC-CCeEEEEEEHHHhhc
Confidence            5666655  999999999999999999999987 789999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.22  E-value=1.9e-10  Score=95.68  Aligned_cols=116  Identities=19%  Similarity=0.362  Sum_probs=94.0

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcc---cccccCcccccccCCCCCC
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF---DIIASQPISDLGLPFMSSD  292 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~---~~~~~~~v~~l~l~im~~~  292 (444)
                      ++.++++++++.+|++.|.+.+.+++||+|.+ ++++|+++..++.+...........   ......++.+    +|.. 
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~~-   75 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKE----IMTK-   75 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHH----HhhC-
Confidence            46788999999999999998999999999987 8999999999998765322111000   0123456777    5765 


Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      ++.++.+++++.++++.|.+++...+||++  +++++|+++.+|+++
T Consensus        76 ~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvv~~~di~~  120 (121)
T cd04584          76 DVITVHPLDTVEEAALLMREHRIGCLPVVE--DGRLVGIITETDLLR  120 (121)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCeEEEee--CCEEEEEEEHHHhhc
Confidence            789999999999999999999999999998  489999999999864

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.22  E-value=2.4e-10  Score=93.84  Aligned_cols=110  Identities=22%  Similarity=0.434  Sum_probs=91.8

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHH-HHhhcCCCCCcccccccCcccccccCCCCCCCc
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV-QGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  294 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~-~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~  294 (444)
                      ++.++.+++++.+|++.|.+++.+.+||+|+  +++.|+++..|++ +.+....  .    ....++.+    +|.. .+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~--~----~~~~~~~~----~~~~-~~   68 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGR--D----PDTTTVGD----VMTR-GV   68 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccC--C----cccCCHHH----hccC-Cc
Confidence            4678999999999999999999999999986  7999999999986 3333221  1    12234777    6765 78


Q ss_pred             eEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       295 ~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      .++.+++++.++++.|.+.+.+.+||+++ +++++|+++..|+++
T Consensus        69 ~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~  112 (113)
T cd04622          69 VTVTEDDDVDEAARLMREHQVRRLPVVDD-DGRLVGIVSLGDLAR  112 (113)
T ss_pred             cEECCCCCHHHHHHHHHHcCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence            89999999999999999999999999987 689999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.22  E-value=1.6e-10  Score=96.20  Aligned_cols=115  Identities=30%  Similarity=0.461  Sum_probs=93.6

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCC----cccccccCcccccccCCCCC
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD----WFDIIASQPISDLGLPFMSS  291 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~----~~~~~~~~~v~~l~l~im~~  291 (444)
                      +++.+.+++++.++++.|.+++++.+||+|+  ++++|+++..++.+.+.......    ....+...++.+    +|..
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~   75 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSD----IMTR   75 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHH----HccC
Confidence            4778999999999999999999999999996  79999999999987655321100    001122346666    5765


Q ss_pred             CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       292 ~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                       ++.++.+++++.++++.|.+.+.+.+||+++  ++++|+++.+|+++
T Consensus        76 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~  120 (121)
T cd04633          76 -PVITIEPDTSVSDVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR  120 (121)
T ss_pred             -CceEECCCCcHHHHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence             7899999999999999999999999999994  89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.20  E-value=1.7e-10  Score=94.35  Aligned_cols=102  Identities=17%  Similarity=0.342  Sum_probs=87.1

Q ss_pred             eeCCCCHHHHHHHHHhCC-----CCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCc
Q 013373          220 VATDDSMLSVLLLLSKYR-----LRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  294 (444)
Q Consensus       220 v~~~~sl~~a~~~l~~~~-----i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~  294 (444)
                      +.+++++.++++.|.+++     +..+||+|++ ++++|+++..++++.   .         ...++.+    +|.. ++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~---~---------~~~~v~~----~~~~-~~   63 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLA---D---------PDTPVSD----IMDT-DV   63 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcC---C---------CcchHHH----HhCC-CC
Confidence            568899999999998777     4789999976 799999999998751   0         2346777    6665 78


Q ss_pred             eEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHH
Q 013373          295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL  340 (444)
Q Consensus       295 ~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~  340 (444)
                      ..+.+++++.++++.|.+++...+||+++ +++++|++|..|+++.
T Consensus        64 ~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dll~~  108 (109)
T cd04606          64 ISVSADDDQEEVARLFEKYDLLALPVVDE-EGRLVGIITVDDVIDV  108 (109)
T ss_pred             eEEcCCCCHHHHHHHHHHcCCceeeeECC-CCcEEEEEEhHHhhhh
Confidence            99999999999999999999999999997 7899999999999865

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.20  E-value=1.7e-10  Score=94.18  Aligned_cols=107  Identities=20%  Similarity=0.431  Sum_probs=89.9

Q ss_pred             CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCc
Q 013373          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  294 (444)
Q Consensus       215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~  294 (444)
                      .++..+.+++++.++++.|.+++...+||+|++ ++++|+++..++.....           ...++.+    +|.. .+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~-----------~~~~v~~----~~~~-~~   64 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFETD-----------LDKPVSE----VMTP-EN   64 (110)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeeccc-----------CCCCHHH----hccc-Cc
Confidence            357889999999999999999999999999987 89999999999853210           2346777    6764 55


Q ss_pred             eEecC-CCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          295 ITIQS-NELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       295 ~~v~~-~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      ..+.. ++++.++++.|.+++.+.+||+++ +++++|+||.+|+++
T Consensus        65 ~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~dil~  109 (110)
T cd04601          65 LLTTVEGTSLEEALELLHEHKIEKLPVVDD-EGKLKGLITVKDIEK  109 (110)
T ss_pred             eEEecCCCCHHHHHHHHHHhCCCeeeEEcC-CCCEEEEEEhhhhhc
Confidence            66666 999999999999999999999997 789999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.20  E-value=2.8e-10  Score=92.18  Aligned_cols=102  Identities=26%  Similarity=0.421  Sum_probs=88.8

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~  295 (444)
                      ++..+.+++++.++++.|.+++.+.+||+| + ++++|+++..++.+..            ...++.+    +|.. ++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~-~~~~Giv~~~~l~~~~------------~~~~~~~----~~~~-~~~   62 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-D-GKLVGIITSRDVRRAH------------PNRLVAD----AMTR-EVV   62 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEehHHhhccc------------ccCCHHH----HccC-CCE
Confidence            467789999999999999989999999998 4 7999999999997632            1235667    6765 789


Q ss_pred             EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHH
Q 013373          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR  338 (444)
Q Consensus       296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll  338 (444)
                      ++.+++++.++++.|.+++...+||++  +++++|++|.+|++
T Consensus        63 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~G~it~~~l~  103 (105)
T cd04599          63 TISPEASLLEAKRLMEEKKIERLPVLR--ERKLVGIITKGTIA  103 (105)
T ss_pred             EECCCCCHHHHHHHHHHcCCCEeeEEE--CCEEEEEEEHHHhc
Confidence            999999999999999999999999999  48999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.20  E-value=1.7e-10  Score=110.64  Aligned_cols=113  Identities=21%  Similarity=0.349  Sum_probs=98.3

Q ss_pred             CcHHHhhhhcCCCC-ceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcc
Q 013373          203 TTVRSIIKSYRWAP-FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI  281 (444)
Q Consensus       203 ~~v~di~~~~~~~~-~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v  281 (444)
                      .+++++|.    .+ +..+.+++++.++++.|.+.+++.+||+|++ ++++|+++..|+.+.+....       ....++
T Consensus       155 ~~v~~im~----~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~-------~~~~~v  222 (268)
T TIGR00393       155 VKVKDLMQ----TTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGG-------SLKSEV  222 (268)
T ss_pred             hhHHHHhC----CCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCC-------cccCcH
Confidence            57899997    55 8899999999999999999999999999987 89999999999988654321       134678


Q ss_pred             cccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEe
Q 013373          282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVS  333 (444)
Q Consensus       282 ~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt  333 (444)
                      ++    +|.+ ++.++.+++++.++++.|.+++...+||+|+ +|+++|+|+
T Consensus       223 ~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~l~GvI~  268 (268)
T TIGR00393       223 RD----FMTL-GPKTFKLDALLLEALEFLERRKITSLVVVDD-HNKVLGVLH  268 (268)
T ss_pred             HH----hCCC-CCeEECCCCcHHHHHHHHHHcCCcEEEEECC-CCeEEEEEC
Confidence            88    7876 7899999999999999999999999999997 789999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.20  E-value=2.7e-10  Score=92.93  Aligned_cols=108  Identities=20%  Similarity=0.322  Sum_probs=89.4

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~  295 (444)
                      ++.++.+++++.++++.|.+++++++||+|.  ++++|+++..|+.+.+......      ...++.+    +|.. ++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~------~~~~~~~----~~~~-~~~   68 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAK------FSLPVRE----VMGE-PLP   68 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccc------cCcCHHH----HhcC-CCc
Confidence            4678899999999999999999999999996  7999999999999876543210      1346777    5765 788


Q ss_pred             EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      ++++++++.++.+.|.+ .. .+||+++ +++++|++|.+|+++
T Consensus        69 ~v~~~~~l~~~~~~~~~-~~-~~~vv~~-~~~~~Gvvt~~di~~  109 (110)
T cd04609          69 TVDPDAPIEELSELLDR-GN-VAVVVDE-GGKFVGIITRADLLK  109 (110)
T ss_pred             eeCCCCcHHHHHHHHHh-CC-ceeEEec-CCeEEEEEeHHHhhc
Confidence            99999999999999987 33 4788887 799999999999975

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.20  E-value=4.3e-10  Score=92.89  Aligned_cols=108  Identities=27%  Similarity=0.498  Sum_probs=94.7

Q ss_pred             CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCc
Q 013373          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  294 (444)
Q Consensus       215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~  294 (444)
                      ..++++.++.++.+|+..|.++++..+||++.  .+++|++|..|+++.+......       ..++.+    +|+. ++
T Consensus         7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~-------~~~v~~----v~~~-~~   72 (117)
T COG0517           7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKR-------LLPVKE----VMTK-PV   72 (117)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCc-------cccHHH----hccC-Cc
Confidence            45899999999999999999999999999986  3799999999999988765211       115777    7875 89


Q ss_pred             eEecCCCcHHHHHHHHHH-cCCCeEeEEeCCCC-eEEEEEeHHHH
Q 013373          295 ITIQSNELILEAFKRMKD-NNIGGIPVVEGQQK-KIVGNVSIRDI  337 (444)
Q Consensus       295 ~~v~~~~sl~ea~~~m~~-~~~~~lpVvd~~~~-~lvGiIt~~Dl  337 (444)
                      .++.++.++.++.+.|.+ ++++.+||+++ ++ +++|++|.+|+
T Consensus        73 ~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~-~~~~lvGivt~~di  116 (117)
T COG0517          73 VTVDPDTPLEEALELMVERHKIRRLPVVDD-DGGKLVGIITLSDI  116 (117)
T ss_pred             EEECCCCCHHHHHHHHHHHcCcCeEEEEEC-CCCeEEEEEEHHHc
Confidence            999999999999999999 69999999997 65 99999999997

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.19  E-value=4e-10  Score=91.57  Aligned_cols=111  Identities=22%  Similarity=0.387  Sum_probs=93.3

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~  295 (444)
                      ++..+.++.++.++++.|.+++.+++||++++ ++++|+++..|+...+.......      ...+.+    +|.. ++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~------~~~~~~----~~~~-~~~   69 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDP------LVTVGD----VMTR-DVV   69 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCc------cccHHH----HhcC-Cce
Confidence            46788999999999999999899999999987 79999999999998776432111      111445    5665 788


Q ss_pred             EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      ++.+++++.++++.|.+++.+.+||+++ +++++|+++..|+++
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~  112 (113)
T cd02205          70 TVSPDTSLEEAAELMLEHGIRRLPVVDD-EGRLVGIVTRSDILR  112 (113)
T ss_pred             ecCCCcCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEHHHhhc
Confidence            8999999999999999999999999998 799999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.16  E-value=2.1e-10  Score=102.86  Aligned_cols=171  Identities=15%  Similarity=0.301  Sum_probs=134.8

Q ss_pred             CCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCC-CCceEecCCC
Q 013373          223 DDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSS-DEVITIQSNE  301 (444)
Q Consensus       223 ~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~-~~~~~v~~~~  301 (444)
                      -.+-.+.+.++++...+.+  +|.++         .+++.-..+         +.+..|++    +|-+ ++.+++..+.
T Consensus        31 pknr~eLl~liRdse~n~L--iD~dt---------~~mlEGvm~---------iadl~vrD----iMIPRSQM~~l~~~~   86 (293)
T COG4535          31 PKNREELLELIRDSEQNEL--IDADT---------LDMLEGVMD---------IADLRVRD----IMIPRSQMITLKRNQ   86 (293)
T ss_pred             CcCHHHHHHHHHHhhhccc--cChhH---------HHHHHHHHH---------HHHhhHhh----hcccHHHheeccccC
Confidence            3466788888877655543  34331         122222221         14567888    5654 4789999999


Q ss_pred             cHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCCCeEecCC
Q 013373          302 LILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLE  381 (444)
Q Consensus       302 sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~  381 (444)
                      ++.+++..+.+...+++||+.++.+.+.|++-.+|+++++.+...     ...+.+++.             |.+.|+++
T Consensus        87 ~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~-----~F~i~~lLR-------------Pav~VPES  148 (293)
T COG4535          87 TLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE-----PFDIKELLR-------------PAVVVPES  148 (293)
T ss_pred             CHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc-----cccHHHhcc-------------cceecccc
Confidence            999999999999999999998767899999999999998765322     235778876             88999999


Q ss_pred             CCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCccchhhhhh
Q 013373          382 STLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDNYFGF  436 (444)
Q Consensus       382 ~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~~~~~~~~~  436 (444)
                      -.+...++-|...+.|-..|||+.| -+-|.||..|||..++++..+.|+.--..
T Consensus       149 Krvd~lLkeFR~~RnHMAIViDEfG-gVsGLVTIEDiLEqIVGdIEDE~Deee~~  202 (293)
T COG4535         149 KRVDRLLKEFRSQRNHMAIVIDEFG-GVSGLVTIEDILEQIVGDIEDEYDEEEDA  202 (293)
T ss_pred             hhHHHHHHHHHhhcCceEEEEeccC-CeeeeEEHHHHHHHHhcccccccchhhhh
Confidence            9999999999999999999999998 99999999999999999999988764333

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.16  E-value=6e-10  Score=90.44  Aligned_cols=100  Identities=16%  Similarity=0.243  Sum_probs=86.9

Q ss_pred             eEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCceEe
Q 013373          218 LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITI  297 (444)
Q Consensus       218 v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~~v  297 (444)
                      +++.+++++.++++.|.+.+...+||+|.  ++++|+++..|+.+..             ..++.+    +|.. ++.++
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~-------------~~~~~~----~~~~-~~~~v   63 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENAT-------------YGDVVD----YIVR-GIPYV   63 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhc-------------ccchhh----hhhc-CCcEE
Confidence            56789999999999999999999999996  7999999999997531             124566    5665 68899


Q ss_pred             cCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          298 QSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       298 ~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      .+++++.++++.|.+++.+.+||++  +|+++|++|..|++.
T Consensus        64 ~~~~~l~~a~~~~~~~~~~~~~Vv~--~~~~iGvit~~dl~~  103 (104)
T cd04594          64 RLTSTAEEAWEVMMKNKTRWCPVVD--DGKFKGIVTLDSILD  103 (104)
T ss_pred             cCCCCHHHHHHHHHHcCcceEEEEE--CCEEEEEEEHHHhhc
Confidence            9999999999999999999999998  589999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.15  E-value=5.8e-10  Score=90.62  Aligned_cols=105  Identities=16%  Similarity=0.354  Sum_probs=90.6

Q ss_pred             CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCc
Q 013373          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  294 (444)
Q Consensus       215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~  294 (444)
                      .+++++..+.++.++++.|.+++...+||+|+  ++++|+++..|++..   .         ...++.+    +|.. ++
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~---~---------~~~~~~~----~~~~-~~   62 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGK---D---------PDETVEE----IMSK-DL   62 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhcc---C---------ccccHHH----hCCC-CC
Confidence            35788999999999999998888889999985  799999999998752   1         2346777    6765 78


Q ss_pred             eEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       295 ~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      .++.+++++.++++.|.+++.+.+||+++ +|+++|+++..|+++
T Consensus        63 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvi~~~di~~  106 (107)
T cd04610          63 VVAVPEMDIMDAARVMFRTGISKLPVVDE-NNNLVGIITNTDVIR  106 (107)
T ss_pred             eEECCCCCHHHHHHHHHHhCCCeEeEECC-CCeEEEEEEHHHhhc
Confidence            89999999999999999999999999997 789999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.15  E-value=2.3e-10  Score=108.22  Aligned_cols=120  Identities=19%  Similarity=0.262  Sum_probs=108.1

Q ss_pred             CcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCccc
Q 013373          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (444)
Q Consensus       203 ~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~  282 (444)
                      .+|.|+|...  .....+.+++++.+-.++-.+.|..|+||+|.. .+++|++|.+|+...-            .+.++.
T Consensus       188 ~~Vedi~~P~--~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~-~kvvGvVt~rDv~~~~------------~~t~ie  252 (432)
T COG4109         188 ITVEDIMTPL--EDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRS-MKVVGVVTMRDVLDKK------------PSTTIE  252 (432)
T ss_pred             eeHHHhcccc--ccceeccccccHHHHHHHHHHcCCCccceeccc-ceEEEEEEehhhhcCC------------CCccHH
Confidence            5789999854  668899999999999999999999999999987 7999999999996521            456788


Q ss_pred             ccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373          283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (444)
Q Consensus       283 ~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~  343 (444)
                      .    +|++ +++++.+.+++..+.+.|.=.++.-+||+++ +.+++|+||++|+++.+..
T Consensus       253 K----VMtk-np~tv~~~tsVAsvaq~MiwE~iem~PVv~~-n~~llGiitR~dvlk~lq~  307 (432)
T COG4109         253 K----VMTK-NPITVRAKTSVASVAQMMIWEGIEMLPVVDS-NNTLLGIITRQDVLKSLQM  307 (432)
T ss_pred             H----Hhcc-CCeeecccchHHHHHHHHHhccceeeeEEcC-CceEEEEEEHHHHHHHHHH
Confidence            8    8997 8999999999999999999999999999998 8999999999999998863

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.14  E-value=7e-10  Score=90.46  Aligned_cols=100  Identities=16%  Similarity=0.336  Sum_probs=87.1

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCC--CCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCC
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDE  293 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~--~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~  293 (444)
                      ....+.+++++.++...|.+.+...+||+|+.  .++++|+++..|+.+....                     +|.. +
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~---------------------~m~~-~   60 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN---------------------YIDP-S   60 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------------hccC-C
Confidence            36788999999999999999889999999972  2899999999999765432                     2554 7


Q ss_pred             ceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       294 ~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      +.++.+++++.++++.|.+++.+.+||++  +|+++|++|.+|+++
T Consensus        61 ~~~v~~~~~l~~~~~~~~~~~~~~~pVv~--~~~~~Gvvt~~dl~~  104 (105)
T cd04591          61 PFTVSPRTSLEKVHQLFRKLGLRHLLVVD--EGRLVGIITRKDLLK  104 (105)
T ss_pred             CceECCCCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEhhhhhc
Confidence            88999999999999999999999999996  789999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.14  E-value=4.7e-10  Score=115.75  Aligned_cols=112  Identities=19%  Similarity=0.213  Sum_probs=98.6

Q ss_pred             CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCC--CCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCC
Q 013373          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD  292 (444)
Q Consensus       215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~--~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~  292 (444)
                      .+++++.+++++.+|+++|.+++++.+||+|++  .++++|+||..|+....  .         .+.+|.+    +|++ 
T Consensus       108 ~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~--~---------~~~~V~e----IMt~-  171 (505)
T PLN02274        108 SDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN--D---------RETKLSE----VMTS-  171 (505)
T ss_pred             CCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc--c---------cCCcHHH----Hhcc-
Confidence            568999999999999999999999999999873  27999999999995421  1         3567888    7875 


Q ss_pred             C--ceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373          293 E--VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (444)
Q Consensus       293 ~--~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~  343 (444)
                      +  ++++.+++++.++++.|.++++..+||+|+ +++++|+||.+|+++.+..
T Consensus       172 ~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~-~g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        172 DDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE-DGELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             CCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHhhC
Confidence            4  789999999999999999999999999998 7899999999999988764

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.11  E-value=1e-09  Score=113.34  Aligned_cols=122  Identities=20%  Similarity=0.321  Sum_probs=101.0

Q ss_pred             CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013373          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  279 (444)
Q Consensus       200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~  279 (444)
                      +...+++++|.    .++.++.+++++.++++.|.+++++.+||+|++ ++++|+||..|+.+.+......      ...
T Consensus       332 l~~~~v~~im~----~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~------~~~  400 (454)
T TIGR01137       332 LKNATVKDLHL----PAPVTVHPTETVGDAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGKAN------PDD  400 (454)
T ss_pred             hccCCHHHhCc----CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccCCC------cCC
Confidence            45678899987    679999999999999999999999999999976 7999999999999876542110      234


Q ss_pred             cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHh
Q 013373          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  341 (444)
Q Consensus       280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l  341 (444)
                      ++.+    +|.. ++.++.+++++.++++.|.+++   .+||++ +++++|+||.+|++..+
T Consensus       401 ~v~~----im~~-~~~~v~~~~~l~~a~~~~~~~~---~~vV~~-~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       401 AVSK----VMSK-KFIQIGEGEKLSDLSKFLEKNS---SAIVTE-EGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             CHHH----hcCC-CCeEECCcCcHHHHHHHHHHCC---eeEEEE-CCEEEEEEEHHHHHHhh
Confidence            7888    6876 7889999999999999998754   355555 78999999999998875

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.11  E-value=5.4e-10  Score=114.45  Aligned_cols=112  Identities=23%  Similarity=0.419  Sum_probs=97.8

Q ss_pred             CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCC--CcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCC
Q 013373          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGT--PDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD  292 (444)
Q Consensus       215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~--~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~  292 (444)
                      .+++++.+++++.+++++|.+++++++||+|++.  ++++|++|.+|+....  .         ...++.+    +|++.
T Consensus        88 ~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~--~---------~~~~V~d----vm~~~  152 (450)
T TIGR01302        88 SDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK--D---------KGKPVSE----VMTRE  152 (450)
T ss_pred             cCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh--c---------CCCCHHH----hhCCC
Confidence            5689999999999999999999999999999753  5899999999996421  1         2457888    67722


Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      +++++.+++++.++++.|.+++.+.+||+|+ +|+++|+||.+|+++.+.
T Consensus       153 ~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe-~G~lvGiVT~~DIl~~~~  201 (450)
T TIGR01302       153 EVITVPEGIDLEEALKVLHEHRIEKLPVVDK-NGELVGLITMKDIVKRRK  201 (450)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEhHHhhhccc
Confidence            7899999999999999999999999999998 899999999999998764

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.11  E-value=1.3e-09  Score=94.12  Aligned_cols=115  Identities=23%  Similarity=0.339  Sum_probs=92.9

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCc--c--------------------
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW--F--------------------  273 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~--~--------------------  273 (444)
                      +++++.+++++.++++.|.+.++..+||+|+  ++++|+++..|+.+++........  .                    
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEET   79 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHH
Confidence            4778999999999999999999999999996  799999999999887753210000  0                    


Q ss_pred             ----cccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          274 ----DIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       274 ----~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                          ......++.+    +|.. ++.++.+++++.+++..|.+++.+.+||+++  ++++|+++.+|++.
T Consensus        80 ~~~~~~~~~~~v~~----~~~~-~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~  142 (143)
T cd04634          80 KRALTDAGKMKVRD----IMTK-KVITISPDASIEDAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHHhcCCHHH----HcCC-CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence                0012345666    5665 7899999999999999999999999999984  89999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.08  E-value=1.4e-09  Score=92.85  Aligned_cols=110  Identities=18%  Similarity=0.238  Sum_probs=82.2

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccccc--------ccCcHHHHhcccCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNF--------RQLTVRDFMNAVVP  364 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~--------~~~~v~~~m~~~~~  364 (444)
                      ++.++.+++++.+|++.|..++++.+||+|+ +++++|++|.+|+++.+.........        ....+.++|....-
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~-~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~   80 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS-DDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGIS   80 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhh
Confidence            5789999999999999999999999999998 79999999999999887532221000        01123445531000


Q ss_pred             CCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCC
Q 013373          365 TTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE  406 (444)
Q Consensus       365 ~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~  406 (444)
                         ......+++++.+++++.+|++.|.+++++++||+|+.+
T Consensus        81 ---~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~  119 (133)
T cd04592          81 ---YGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV  119 (133)
T ss_pred             ---hcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence               000013789999999999999999999999999998754

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.08  E-value=2.1e-09  Score=87.31  Aligned_cols=104  Identities=27%  Similarity=0.437  Sum_probs=88.6

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~  295 (444)
                      ++.++.++.++.+++..|.+.+...+||++++ ++++|+++..++....            ...++.+    +|.. ++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~------------~~~~~~~----~~~~-~~~   63 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNP------------EEEQLAL----LMTR-DPP   63 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhcc------------ccchHHH----HhcC-CCc
Confidence            47788999999999999998889999999987 7999999999996521            1234566    5665 788


Q ss_pred             EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      ++.+++++.+++..|.+++.+.+||+++  ++++|+++..|++.
T Consensus        64 ~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~  105 (106)
T cd04638          64 TVSPDDDVKEAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR  105 (106)
T ss_pred             eECCCCCHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence            8999999999999999999999999984  69999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.08  E-value=1.7e-09  Score=111.62  Aligned_cols=112  Identities=17%  Similarity=0.238  Sum_probs=97.0

Q ss_pred             CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCC--CCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCC-
Q 013373          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSS-  291 (444)
Q Consensus       215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~--~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~-  291 (444)
                      .+++++.+++++.+|+++|.+++++.+||+|++  .++++|++|..|+... . .         ...++++    +|++ 
T Consensus       104 ~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~-~-~---------~~~~V~d----iMt~~  168 (495)
T PTZ00314        104 MDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV-K-D---------KSTPVSE----VMTPR  168 (495)
T ss_pred             cCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc-c-c---------CCCCHHH----hhCCc
Confidence            568899999999999999999999999999873  3789999999998621 1 1         3467888    7863 


Q ss_pred             CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       292 ~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      .+++++.+++++.+++++|.++++..+||+|+ +++++|+||.+|+++...
T Consensus       169 ~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~-~g~liGIIT~~DIl~~~~  218 (495)
T PTZ00314        169 EKLVVGNTPISLEEANEVLRESRKGKLPIVND-NGELVALVSRSDLKKNRG  218 (495)
T ss_pred             CCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEehHhhhccc
Confidence            36889999999999999999999999999998 899999999999988754

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=99.07  E-value=6.1e-10  Score=106.48  Aligned_cols=128  Identities=21%  Similarity=0.350  Sum_probs=109.2

Q ss_pred             ccCcccccccCCCCCC-CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013373          277 ASQPISDLGLPFMSSD-EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV  355 (444)
Q Consensus       277 ~~~~v~~l~l~im~~~-~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v  355 (444)
                      .+.+|+|    +|.++ ++..+..+++..++++.+.+..+.++|+..++-++++|++..+|+++++.+...      .+-
T Consensus       198 e~~tV~D----IMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~------~~k  267 (423)
T COG4536         198 ENLTVSD----IMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE------FTK  267 (423)
T ss_pred             ccceeee----eeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc------ccH
Confidence            4568999    78663 678899999999999999999999999998756789999999999999886432      233


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013373          356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  425 (444)
Q Consensus       356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e  425 (444)
                      .++++..          .+|.++++.+++.+-+..|.+++-|--.|||+.| .+.|+||+.||+..++++
T Consensus       268 ~d~~~~a----------~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG-~i~GLVTLEDIlEEIVGd  326 (423)
T COG4536         268 EDILRAA----------DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYG-DIQGLVTLEDILEEIVGD  326 (423)
T ss_pred             hHHHHHh----------cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccC-cEEeeeeHHHHHHHHhcc
Confidence            4444311          2789999999999999999999999999999998 999999999999999973

>PRK11573 hypothetical protein; Provisional

Probab=99.07  E-value=3.4e-09  Score=107.30  Aligned_cols=172  Identities=11%  Similarity=0.139  Sum_probs=126.0

Q ss_pred             hhccCCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcc
Q 013373          194 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF  273 (444)
Q Consensus       194 l~~~~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~  273 (444)
                      +.+--.+...+++++|...  .+++.++.++++.++++.+.+++++|+||++++..+++|++..+|++..+.....    
T Consensus       178 i~~vl~l~~~~v~eiMtPr--~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~----  251 (413)
T PRK11573        178 LLSVLDLEKVTVDDIMVPR--NEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE----  251 (413)
T ss_pred             HHHHhccCCCChhhcCCcc--ceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCc----
Confidence            3344567889999999954  7899999999999999999999999999998766789999999999876543210    


Q ss_pred             cccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccC
Q 013373          274 DIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQL  353 (444)
Q Consensus       274 ~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~  353 (444)
                        .....+.+    ++.  ++..|+++.++.++++.|.+++.+-..|+|+ -|...|+||..|++..+.. +........
T Consensus       252 --~~~~~l~~----~~r--~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE-yG~~~GiVTleDilEeivG-ei~de~d~~  321 (413)
T PRK11573        252 --FTKENMLR----AAD--EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE-YGDIQGLVTVEDILEEIVG-DFTTSMSPT  321 (413)
T ss_pred             --CCHHHHHh----hcc--CCeEeCCCCcHHHHHHHHHhcCCeEEEEEec-CCCeEEEeeHHHHHHHHhC-CCCcccCcc
Confidence              01122334    343  6889999999999999999999999999998 8999999999999987653 111111000


Q ss_pred             cHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHH
Q 013373          354 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSL  391 (444)
Q Consensus       354 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m  391 (444)
                      .-..+..          .......++...++.++-+.+
T Consensus       322 ~~~~i~~----------~~~~~~~v~G~~~l~d~~~~l  349 (413)
T PRK11573        322 LAEEVTP----------QNDGSVIIDGTANVREINKAF  349 (413)
T ss_pred             cccceEE----------ecCCEEEEEeeeEHHHHHHHh
Confidence            0000111          012446677777777777765

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.05  E-value=2.2e-09  Score=89.03  Aligned_cols=113  Identities=16%  Similarity=0.272  Sum_probs=90.2

Q ss_pred             CceEeeCCCCHHHHHHHHHhCC-CCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCc
Q 013373          216 PFLPVATDDSMLSVLLLLSKYR-LRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  294 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~-i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~  294 (444)
                      ++.++.+++++.++++.|...+ .+.+||+|+  ++++|+++..|+.+.+.......   .....++.+    +|.. ++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~---~~~~~~v~~----~~~~-~~   71 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRA---LYGKKPVSE----VMDP-DP   71 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHH---HHcCCcHHH----hcCC-Cc
Confidence            3567899999999999998876 889999997  79999999999987654321000   013456778    6776 78


Q ss_pred             eEecCCCcHHHHHHHHHHcCCC---eEeEEeCCCCeEEEEEeHHHHHH
Q 013373          295 ITIQSNELILEAFKRMKDNNIG---GIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       295 ~~v~~~~sl~ea~~~m~~~~~~---~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      .++.+++++.+++..|.+++..   ..+|+++ +|+++|+||..|+++
T Consensus        72 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-~~~~~Gvvs~~di~~  118 (119)
T cd04598          72 LIVEADTPLEEVSRLATGRDSQNLYDGFIVTE-EGRYLGIGTVKDLLR  118 (119)
T ss_pred             EEecCCCCHHHHHHHHHcCCcccccccEEEee-CCeEEEEEEHHHHhc
Confidence            9999999999999999988753   4468877 799999999999864

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.02  E-value=1.8e-09  Score=108.92  Aligned_cols=131  Identities=21%  Similarity=0.351  Sum_probs=112.9

Q ss_pred             ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHc-----CCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccc
Q 013373          277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDN-----NIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR  351 (444)
Q Consensus       277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~-----~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~  351 (444)
                      ....+..    .|+. .++++.++.|+.+++..+++.     .+..+.|+|. +++++|+++.++++..  +       .
T Consensus       130 ~e~taG~----~Mt~-e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~-~~~L~Gvvsl~~Ll~a--~-------~  194 (451)
T COG2239         130 PEDTAGR----IMTT-EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE-KGKLLGVVSLRDLLTA--E-------P  194 (451)
T ss_pred             Chhhhhc----ccee-eeEEeccCcCHHHHHHHHHHhcccccccceEEEECC-ccceEEEeeHHHHhcC--C-------c
Confidence            4456666    7887 899999999999999999854     3688999998 8899999999999765  2       2


Q ss_pred             cCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCccch
Q 013373          352 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLD  431 (444)
Q Consensus       352 ~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~~~~  431 (444)
                      +.++.++|..            .++++.+++...++.+.+.+++.-.+||||+++ +++|+||..|++..+-.|....+.
T Consensus       195 ~~~i~~im~~------------~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~-~LiG~itiDDiidvi~eEa~eDi~  261 (451)
T COG2239         195 DELLKDLMED------------DVVSVLADDDQEEVARLFEKYDLLAVPVVDEDN-RLIGIITIDDIIDVIEEEATEDIL  261 (451)
T ss_pred             HhHHHHHhcc------------cceeecccCCHHHHHHHHHHhCCeecceECCCC-ceeeeeeHHHHHHHHHHHHHHHHH
Confidence            4589999985            689999999999999999999999999999998 999999999999999776666555


Q ss_pred             hhhh
Q 013373          432 NYFG  435 (444)
Q Consensus       432 ~~~~  435 (444)
                      ++.+
T Consensus       262 ~~~G  265 (451)
T COG2239         262 RMAG  265 (451)
T ss_pred             HhcC
Confidence            5554

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.97  E-value=6.9e-09  Score=88.54  Aligned_cols=106  Identities=14%  Similarity=0.127  Sum_probs=79.6

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCC-ccc----ccccCcccccc-----
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD-WFD----IIASQPISDLG-----  285 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~-~~~----~~~~~~v~~l~-----  285 (444)
                      ++.++.+++++.+|++.|.++++..+||+|++ ++++|++|..|+++++....... ...    ......+.++-     
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~   80 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGIS   80 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhh
Confidence            37889999999999999999999999999987 89999999999998775432110 000    00011122310     


Q ss_pred             cCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeC
Q 013373          286 LPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEG  323 (444)
Q Consensus       286 l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~  323 (444)
                      .+.|.. +++++.+++++.+|++.|.+++++.+||+++
T Consensus        81 ~~~~~~-~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~  117 (133)
T cd04592          81 YGGQEC-GLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR  117 (133)
T ss_pred             hcccCC-CCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence            002344 7899999999999999999999999999986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.94  E-value=3.9e-09  Score=75.77  Aligned_cols=56  Identities=27%  Similarity=0.564  Sum_probs=52.1

Q ss_pred             HHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhH
Q 013373          355 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI  423 (444)
Q Consensus       355 v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~  423 (444)
                      |+++|.+            ++.++++++++.++++.|.+++++++||+|+++ +++|+||.+||++++.
T Consensus         1 v~~~m~~------------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~-~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    1 VGDIMTP------------PPITVSPDDSLEEALEIMRKNGISRLPVVDEDG-KLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHHSBS------------SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTS-BEEEEEEHHHHHHHHH
T ss_pred             CeECCcC------------CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCC-EEEEEEEHHHHHhhhh
Confidence            4677874            899999999999999999999999999999997 9999999999999875

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=98.92  E-value=4.1e-08  Score=100.23  Aligned_cols=172  Identities=12%  Similarity=0.166  Sum_probs=126.6

Q ss_pred             hhhccCCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCc
Q 013373          193 VILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW  272 (444)
Q Consensus       193 ~l~~~~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~  272 (444)
                      .+.+--.+...+++++|...  .+++.++.+.++.++++.+.+++++|+||++.+...++|++..+|++..+.....   
T Consensus       196 mi~~v~~l~~~~v~eiMtPR--~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~---  270 (429)
T COG1253         196 MINNVLDLDDRTVREIMTPR--TDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS---  270 (429)
T ss_pred             HHHHHhccCCcEeeeEeeec--ccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc---
Confidence            33444557789999999954  7899999999999999999999999999999656789999999999988765421   


Q ss_pred             ccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccccccc
Q 013373          273 FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ  352 (444)
Q Consensus       273 ~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~  352 (444)
                           ......    .+.  +++.++++.++.++++.|++.+.+-..|+|+ -|.+.|+||..|++..+.. +.......
T Consensus       271 -----~~~~~~----~~~--~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE-yG~~~GlVTleDIiEeIvG-ei~de~d~  337 (429)
T COG1253         271 -----DLDLRV----LVR--PPLFVPETLSLSDLLEEFREERTHMAIVVDE-YGGVEGLVTLEDIIEEIVG-EIPDEHDE  337 (429)
T ss_pred             -----ccchhh----ccc--CCeEecCCCcHHHHHHHHHHhCCeEEEEEEc-CCCeEEEeEHHHHHHHHhC-CCcCcccc
Confidence                 011111    122  6899999999999999999999999999998 8999999999999998763 22111111


Q ss_pred             CcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHH
Q 013373          353 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLA  392 (444)
Q Consensus       353 ~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~  392 (444)
                      ..-.+....         ..+. ..++...++.+.-+.+-
T Consensus       338 ~~~~~~~~~---------~~~~-~~v~G~~~l~e~~~~l~  367 (429)
T COG1253         338 DEEEDIIQR---------DDDG-WLVDGRVPLEELEELLG  367 (429)
T ss_pred             cccccceEe---------cCCc-EEEeccccHHHHHHHhC
Confidence            001111111         0123 66777777777776654

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.80  E-value=2.9e-07  Score=91.61  Aligned_cols=171  Identities=18%  Similarity=0.274  Sum_probs=120.4

Q ss_pred             EeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHh-----hcCCCC-CcccccccCcccccccCCCCCC
Q 013373          219 PVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL-----EGCKGR-DWFDIIASQPISDLGLPFMSSD  292 (444)
Q Consensus       219 ~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l-----~~~~~~-~~~~~~~~~~v~~l~l~im~~~  292 (444)
                      .+-.+..+.++..+     ..++.++++  |+++..-+..++...-     ...... .....+....+.+    .+.. 
T Consensus       183 ii~vTHd~~ea~~~-----~drI~vl~~--G~iv~~g~~~ei~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-  250 (363)
T TIGR01186       183 IVFITHDLDEAIRI-----GDRIVIMKA--GEIVQVGTPDEILRNPANEYVEEFIGKVDLSQVFDAERIAQ----RMNT-  250 (363)
T ss_pred             EEEEeCCHHHHHHh-----CCEEEEEeC--CEEEeeCCHHHHHhCcccHHHHHHhhccchhcccchhhHhh----hccc-
Confidence            33444445555532     367778865  7888888888775421     100000 0000011111111    1222 


Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      ......++.+..+++..|...+...+.|+|+ ++++.|.++..++..++..        ..++.+.+..           
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~--------~~~~~~~~~~-----------  310 (363)
T TIGR01186       251 GPITKTADKGPRSALQLMRDERVDSLYVVDR-QNKLVGVVDVESIKQARKK--------AQGLQDVLID-----------  310 (363)
T ss_pred             cceeecCCCCHHHHHHHHHhcCCceEEEEcC-CCCEEEEEeHHHHHHHhhc--------CCchhhhhcc-----------
Confidence            3345667778999999999999999999998 8999999999999877542        2257777763           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                       ...+++++++|.+++..|.+++.. +||||+++ +++|+||+.+|++.+..
T Consensus       311 -~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~g~i~~~~~~~~~~~  359 (363)
T TIGR01186       311 -DIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQ-RLVGIVTRGSLVDALYD  359 (363)
T ss_pred             -CCceECCCCcHHHHHHHHHhCCCC-EEEECCCC-cEEEEEEHHHHHHHHHh
Confidence             678899999999999999999988 99999988 99999999999999875

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.74  E-value=7.1e-08  Score=97.47  Aligned_cols=129  Identities=13%  Similarity=0.282  Sum_probs=111.0

Q ss_pred             HhhhccCCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHh-----CCCCEEEEecCCCCcEEEEEeHHHHHHHhhc
Q 013373          192 KVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSK-----YRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (444)
Q Consensus       192 ~~l~~~~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~-----~~i~~lpVvd~~~~~l~Givt~~di~~~l~~  266 (444)
                      ..+.+...+...+++.+|.    .+++.+.++.|+.+++..+++     ..+..++|+|.+ +++.|+++.++++..   
T Consensus       121 ~~v~~~l~y~e~taG~~Mt----~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~-~~L~Gvvsl~~Ll~a---  192 (451)
T COG2239         121 ARVRQLLSYPEDTAGRIMT----TEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK-GKLLGVVSLRDLLTA---  192 (451)
T ss_pred             HHHHHhcCCChhhhhccce----eeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc-cceEEEeeHHHHhcC---
Confidence            3444555677788999998    669999999999999999985     356789999998 799999999998641   


Q ss_pred             CCCCCcccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373          267 CKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (444)
Q Consensus       267 ~~~~~~~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~  343 (444)
                      .         .+.++++    +|.+ .++++.+++..+++.+.+.+++.-.+||||+ +++++|++|..|++..+..
T Consensus       193 ~---------~~~~i~~----im~~-~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~-~~~LiG~itiDDiidvi~e  254 (451)
T COG2239         193 E---------PDELLKD----LMED-DVVSVLADDDQEEVARLFEKYDLLAVPVVDE-DNRLIGIITIDDIIDVIEE  254 (451)
T ss_pred             C---------cHhHHHH----Hhcc-cceeecccCCHHHHHHHHHHhCCeecceECC-CCceeeeeeHHHHHHHHHH
Confidence            1         4568888    7887 6999999999999999999999999999999 8999999999999988753

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.74  E-value=3.2e-08  Score=95.48  Aligned_cols=161  Identities=22%  Similarity=0.294  Sum_probs=122.1

Q ss_pred             hCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccc--------cccCcccccccCCCCCCCceEecCCCcHHHH
Q 013373          235 KYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDI--------IASQPISDLGLPFMSSDEVITIQSNELILEA  306 (444)
Q Consensus       235 ~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~--------~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea  306 (444)
                      ++.--..|++..    ....||..++..++....+....+.        -.-..++.+..++++  +++.++|+.++.++
T Consensus        57 r~itl~tPlvsS----pMDTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~~g~~~--~p~v~sp~~tvg~v  130 (503)
T KOG2550|consen   57 RNITLNTPLVSS----PMDTVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYENGFIN--NPIVISPTTTVGEV  130 (503)
T ss_pred             hcccccCceecc----CCcccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhhccccc--CCcccCCcccchhh
Confidence            333444577743    4667888888776654332222211        112345555444554  57888999999999


Q ss_pred             HHHHHHcCCCeEeEEeCC--CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCH
Q 013373          307 FKRMKDNNIGGIPVVEGQ--QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTL  384 (444)
Q Consensus       307 ~~~m~~~~~~~lpVvd~~--~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl  384 (444)
                      ++....+++..+||.++.  ..+++|+||.+|+-.+ .+       ....+.++|.+            .+++.....+|
T Consensus       131 ~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~~-------~~~~~~~vmt~------------~~~~~~~gi~l  190 (503)
T KOG2550|consen  131 KEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-ED-------NSLLVSDVMTK------------NPVTGAQGITL  190 (503)
T ss_pred             hhhcccccccccccccCCcccceeEEEEehhhhhhh-hc-------ccchhhhhccc------------ccccccccccH
Confidence            999999999999999742  4689999999999666 21       24578999986            55889999999


Q ss_pred             HHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013373          385 GSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF  422 (444)
Q Consensus       385 ~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l  422 (444)
                      .++-+++.+++-..+||||+++ +++.+|++.|+.+.-
T Consensus       191 ~~~neiL~~~kkGkl~iv~~~g-elva~~~rtDl~k~~  227 (503)
T KOG2550|consen  191 KEANEILKKIKKGKLPVVDDKG-ELVAMLSRTDLMKNR  227 (503)
T ss_pred             HHHHHHHHhhhcCCcceeccCC-ceeeeeehhhhhhhc
Confidence            9999999999999999999998 999999999998754

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.72  E-value=2.9e-08  Score=89.20  Aligned_cols=139  Identities=11%  Similarity=0.192  Sum_probs=116.0

Q ss_pred             cchhHHhhhccCCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhc
Q 013373          187 HEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (444)
Q Consensus       187 ~~~~~~~l~~~~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~  266 (444)
                      ..+-+..+.+.-.+...+|+|||...  ..++++..+.++.+.+..+.+...+|+||+.+++..+.||+-.+|+++++..
T Consensus        51 D~dt~~mlEGvm~iadl~vrDiMIPR--SQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~  128 (293)
T COG4535          51 DADTLDMLEGVMDIADLRVRDIMIPR--SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRS  128 (293)
T ss_pred             ChhHHHHHHHHHHHHHhhHhhhcccH--HHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcC
Confidence            34444455444456677899999844  7799999999999999999999999999999887899999999999999875


Q ss_pred             CCCCCcccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          267 CKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       267 ~~~~~~~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      ..        ....+++    +.  ++.+.|+++..+.-.++.++.++.+-..|+|+ -|.+-|+||..|++..+.
T Consensus       129 ~~--------~~F~i~~----lL--RPav~VPESKrvd~lLkeFR~~RnHMAIViDE-fGgVsGLVTIEDiLEqIV  189 (293)
T COG4535         129 DA--------EPFDIKE----LL--RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDE-FGGVSGLVTIEDILEQIV  189 (293)
T ss_pred             Cc--------ccccHHH----hc--ccceecccchhHHHHHHHHHhhcCceEEEEec-cCCeeeeEEHHHHHHHHh
Confidence            52        1234566    33  37899999999999999999999999999998 899999999999998764

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.71  E-value=6.2e-08  Score=69.42  Aligned_cols=56  Identities=23%  Similarity=0.457  Sum_probs=51.6

Q ss_pred             HHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhh
Q 013373          205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE  265 (444)
Q Consensus       205 v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~  265 (444)
                      |+++|.    .+++.+.+++++.++++.|.+++++++||+|++ ++++|++|.+|+++++.
T Consensus         1 v~~~m~----~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    1 VGDIMT----PPPITVSPDDSLEEALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHHSB----SSSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHHHH
T ss_pred             CeECCc----CCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhhhh
Confidence            467777    679999999999999999999999999999987 89999999999998874

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.69  E-value=3.8e-07  Score=91.83  Aligned_cols=105  Identities=19%  Similarity=0.241  Sum_probs=90.2

Q ss_pred             ecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCCCe
Q 013373          297 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPI  376 (444)
Q Consensus       297 v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~  376 (444)
                      ..++....+++..|..++...++|+|+ +++++|+++..++......        ..++.+.+..            ...
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~--------~~~~~~~~~~------------~~~  348 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVIER-GNKFVGAVSIDSLKTALTQ--------QQGLDAALID------------APL  348 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEEcC-CCcEEEEEeHHHHHhhhhc--------CCchhhhhcc------------CCc
Confidence            346678899999999999999999998 8999999999999766431        2256666653            678


Q ss_pred             EecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          377 TCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       377 ~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      ++.++++|.+++..|.++... +||||+++ +++|+||+.++++.+..
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~g~~~~~~~~~~~~~  394 (400)
T PRK10070        349 AVDAQTPLSELLSHVGQAPCA-VPVVDEDQ-QYVGIISKGMLLRALDR  394 (400)
T ss_pred             eeCCCCCHHHHHHHHHhCCCc-EEEECCCC-cEEEEEEHHHHHHHHHh
Confidence            999999999999999997755 99999988 99999999999999975

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.58  E-value=5.9e-07  Score=86.33  Aligned_cols=170  Identities=14%  Similarity=0.163  Sum_probs=126.1

Q ss_pred             ccCCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccc
Q 013373          196 QEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDI  275 (444)
Q Consensus       196 ~~~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~  275 (444)
                      ..-.+.+.+|.|+|...  .++..++.+++..+.++.+...-..|+|++.++-.+++|++..+|+++++.+...   +  
T Consensus       193 gvLDLe~~tV~DIMvpR--~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~---~--  265 (423)
T COG4536         193 GVLDLENLTVSDIMVPR--NEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE---F--  265 (423)
T ss_pred             cccccccceeeeeeccc--cceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc---c--
Confidence            33456688999999854  7799999999999999999999999999998876789999999999999987632   1  


Q ss_pred             cccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013373          276 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV  355 (444)
Q Consensus       276 ~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v  355 (444)
                       ....+..    ..  .++..+++.+++.+.+..|.+++-+--.|||+ -|.+.|++|..|++.-+..  .+.+......
T Consensus       266 -~k~d~~~----~a--~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE-YG~i~GLVTLEDIlEEIVG--dftde~d~~~  335 (423)
T COG4536         266 -TKEDILR----AA--DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE-YGDIQGLVTLEDILEEIVG--DFTDEHDTLA  335 (423)
T ss_pred             -cHhHHHH----Hh--cCCeecCCCCcHHHHHHHHHHhcceEEEEEec-cCcEEeeeeHHHHHHHHhc--cccccCcccc
Confidence             1222222    11  26889999999999999999999998899998 8999999999999876542  1111112222


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHH
Q 013373          356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLA  392 (444)
Q Consensus       356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~  392 (444)
                      .++...          .+.-+.++.+.++.+.=+.|-
T Consensus       336 ~ev~~q----------~dgs~iidGs~~iRdlNr~l~  362 (423)
T COG4536         336 KEVIPQ----------SDGSFIIDGSANVRDLNRALD  362 (423)
T ss_pred             hhhccc----------CCCcEEEeCCCcHHHHHHhcC
Confidence            333321          134466777777777655543

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.38  E-value=2.7e-06  Score=82.43  Aligned_cols=111  Identities=22%  Similarity=0.230  Sum_probs=95.8

Q ss_pred             CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCC--CCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCC
Q 013373          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD  292 (444)
Q Consensus       215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~--~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~  292 (444)
                      .+++.+.|+.++.++++...++++..+||.++.  .++++|+||.+|+- ++.+          ....+.+    +|+. 
T Consensus       116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~-f~~~----------~~~~~~~----vmt~-  179 (503)
T KOG2550|consen  116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQ-FLED----------NSLLVSD----VMTK-  179 (503)
T ss_pred             cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhh-hhhc----------ccchhhh----hccc-
Confidence            357889999999999999999999999999753  36899999999983 4422          3467788    7887 


Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      +.++...+.++.++-+++.+.+-..+||+|+ +|+++.+++++||.+.-.
T Consensus       180 ~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~-~gelva~~~rtDl~k~~~  228 (503)
T KOG2550|consen  180 NPVTGAQGITLKEANEILKKIKKGKLPVVDD-KGELVAMLSRTDLMKNRD  228 (503)
T ss_pred             ccccccccccHHHHHHHHHhhhcCCcceecc-CCceeeeeehhhhhhhcC
Confidence            5688899999999999999999999999999 999999999999988743

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.33  E-value=1e-05  Score=80.52  Aligned_cols=108  Identities=18%  Similarity=0.338  Sum_probs=91.3

Q ss_pred             ceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCceE
Q 013373          217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT  296 (444)
Q Consensus       217 ~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~~  296 (444)
                      .....++.+..+++..|...+...+.|+|.+ +++.|.++..++..++...           ..+.+    .+.. .+.+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-----------~~~~~----~~~~-~~~~  314 (363)
T TIGR01186       252 PITKTADKGPRSALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKKA-----------QGLQD----VLID-DIYT  314 (363)
T ss_pred             ceeecCCCCHHHHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhcC-----------Cchhh----hhcc-CCce
Confidence            3456677789999999999999999999987 7999999999987765432           23555    4554 6788


Q ss_pred             ecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373          297 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (444)
Q Consensus       297 v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~  343 (444)
                      +.+++++.+++..|.+++.. +||+|+ +|+++|+|+..+++..+..
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~i~~~~~~~~~~~  359 (363)
T TIGR01186       315 VDAGTLLRETVRKVLKAGIK-VPVVDE-DQRLVGIVTRGSLVDALYD  359 (363)
T ss_pred             ECCCCcHHHHHHHHHhCCCC-EEEECC-CCcEEEEEEHHHHHHHHHh
Confidence            99999999999999999998 999998 8999999999999988763

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.29  E-value=1.3e-06  Score=88.79  Aligned_cols=149  Identities=23%  Similarity=0.293  Sum_probs=108.0

Q ss_pred             ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCC----CeEEEEEeHHHHHHHhcCCcccc----
Q 013373          277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ----KKIVGNVSIRDIRHLLLKPELFS----  348 (444)
Q Consensus       277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~----~~lvGiIt~~Dll~~l~~~~~~~----  348 (444)
                      .+..+++    +|++ +++++..-+.+....+.+..+.++++||+|+..    +++.|+|-++.++.++.......    
T Consensus       580 r~L~a~e----v~~~-pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~  654 (762)
T KOG0474|consen  580 RNLTAGE----VMSK-PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRS  654 (762)
T ss_pred             hhhhHhh----hccC-CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCcc
Confidence            3556777    7887 999999999999999999999999999998632    47899999999988876422111    


Q ss_pred             -----ccccCcHHHHhcccCC--CCC----------C--CCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeE
Q 013373          349 -----NFRQLTVRDFMNAVVP--TTP----------D--SGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEV  409 (444)
Q Consensus       349 -----~~~~~~v~~~m~~~~~--~~~----------~--~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~l  409 (444)
                           .....+.+|+..+...  +.+          +  .-....|.++.+++++..+..++..-+.+++.||+..+ ++
T Consensus       655 ~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~-~~  733 (762)
T KOG0474|consen  655 TFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTN-RV  733 (762)
T ss_pred             ccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCC-ce
Confidence                 1112223333321000  000          0  11334789999999999999999999999999999987 99


Q ss_pred             EEEEeHHHHHHHhHcCCCccch
Q 013373          410 VGVITLRDVISCFIFEPPNHLD  431 (444)
Q Consensus       410 vGvIT~~DIl~~l~~e~~~~~~  431 (444)
                      +|++|++|+..+=..+...+.+
T Consensus       734 ~gilTR~D~~~~~~l~~~~~v~  755 (762)
T KOG0474|consen  734 VGILTRKDLARYRILGLEPHVD  755 (762)
T ss_pred             eEEEehhhhhhHHHhccccccc
Confidence            9999999999665443333333

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.21  E-value=1.6e-05  Score=80.29  Aligned_cols=121  Identities=15%  Similarity=0.174  Sum_probs=94.4

Q ss_pred             CcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCccc
Q 013373          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (444)
Q Consensus       203 ~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~  282 (444)
                      .++.+++.... ...+...++.+..+++..|...+...++|+|.+ +++.|+++..++.+.....           ..+.
T Consensus       274 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-----------~~~~  340 (400)
T PRK10070        274 FSAKDIARRTP-NGLIRKTPGFGPRSALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQQ-----------QGLD  340 (400)
T ss_pred             cchhhhhhcCc-ccccccCCCCCHHHHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhcC-----------Cchh
Confidence            34566664210 111234467789999999999999999999987 8999999999997655321           2355


Q ss_pred             ccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373          283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (444)
Q Consensus       283 ~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~  343 (444)
                      +    .+.. ...++.+++++.+++..|.+.... +||+|+ +|+++|+|+..++++.+..
T Consensus       341 ~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~~~~~~~~~~~~~  394 (400)
T PRK10070        341 A----ALID-APLAVDAQTPLSELLSHVGQAPCA-VPVVDE-DQQYVGIISKGMLLRALDR  394 (400)
T ss_pred             h----hhcc-CCceeCCCCCHHHHHHHHHhCCCc-EEEECC-CCcEEEEEEHHHHHHHHHh
Confidence            5    3444 678999999999999999987766 999998 8999999999999998864

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.19  E-value=4e-06  Score=85.35  Aligned_cols=135  Identities=16%  Similarity=0.281  Sum_probs=105.4

Q ss_pred             CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCC----CcEEEEEeHHHHHHHhhcCCCCC----
Q 013373          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGT----PDIKNYITQSAVVQGLEGCKGRD----  271 (444)
Q Consensus       200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~----~~l~Givt~~di~~~l~~~~~~~----  271 (444)
                      +++.+++|+|.    .|++++..-+.+....+.+.....+.+||+|+..    +++.|+|-.+.++..+......+    
T Consensus       579 mr~L~a~ev~~----~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~  654 (762)
T KOG0474|consen  579 MRNLTAGEVMS----KPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRS  654 (762)
T ss_pred             hhhhhHhhhcc----CCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCcc
Confidence            56678999998    7899999999999999999999999999999742    47889999999887765321110    


Q ss_pred             --cccc--------c--ccCccccccc------------CCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCe
Q 013373          272 --WFDI--------I--ASQPISDLGL------------PFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKK  327 (444)
Q Consensus       272 --~~~~--------~--~~~~v~~l~l------------~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~  327 (444)
                        +...        +  ...+++|+++            ++|++ .+.++.+++++..++.++++-+.+++.|+++ ..+
T Consensus       655 ~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~-sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~-~~~  732 (762)
T KOG0474|consen  655 TFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNP-SPYTVPETMSLAKAFILFRQLGLRHLLVVPK-TNR  732 (762)
T ss_pred             ccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCC-CCcccCcccchHHHHHHHHHhcceeEEEecC-CCc
Confidence              0000        0  0123333321            36777 7899999999999999999999999999998 778


Q ss_pred             EEEEEeHHHHHHH
Q 013373          328 IVGNVSIRDIRHL  340 (444)
Q Consensus       328 lvGiIt~~Dll~~  340 (444)
                      ++|++|++|+...
T Consensus       733 ~~gilTR~D~~~~  745 (762)
T KOG0474|consen  733 VVGILTRKDLARY  745 (762)
T ss_pred             eeEEEehhhhhhH
Confidence            8999999999755

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.93  E-value=2.8e-05  Score=64.13  Aligned_cols=55  Identities=25%  Similarity=0.448  Sum_probs=50.1

Q ss_pred             CcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          353 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       353 ~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                      .++.++|..            ++.++++++++.++++.|.+.+.+.+||+|+++ +++|+||..||.+
T Consensus        58 ~~v~dim~~------------~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~-~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINR------------KPVTARPNDPLREALNLMHEHNIRTLPVVDDDG-TPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCC------------CCCEECCcCcHHHHHHHHHHcCCCEEEEECCCC-eEEEEEEHHHhhc
Confidence            568899874            788999999999999999999999999999887 9999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.87  E-value=4.8e-05  Score=51.19  Aligned_cols=47  Identities=30%  Similarity=0.511  Sum_probs=43.1

Q ss_pred             CeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013373          375 PITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF  422 (444)
Q Consensus       375 ~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l  422 (444)
                      +.++.+++++.++++.|.+.+.+.+||+++++ +++|+++..|+++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEG-RLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCC-eEEEEEEHHHHHHhh
Confidence            57789999999999999999999999999877 999999999998764

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.72  E-value=0.0003  Score=72.21  Aligned_cols=127  Identities=18%  Similarity=0.269  Sum_probs=86.0

Q ss_pred             CceEecCC-CcHHHHHHHHHHcCCCeEeEE-eCCCCeEEEEEeHHHHHHHhcCCccccc-cccCcHHHHhcccCCC----
Q 013373          293 EVITIQSN-ELILEAFKRMKDNNIGGIPVV-EGQQKKIVGNVSIRDIRHLLLKPELFSN-FRQLTVRDFMNAVVPT----  365 (444)
Q Consensus       293 ~~~~v~~~-~sl~ea~~~m~~~~~~~lpVv-d~~~~~lvGiIt~~Dll~~l~~~~~~~~-~~~~~v~~~m~~~~~~----  365 (444)
                      ...+++.+ .++.+....|.+..++.+||+ ++++..++|++.++|+...+.+...... ....+. .+.....+.    
T Consensus       557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~-~f~~~~~~~~~~~  635 (696)
T KOG0475|consen  557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI-YFNDPSPSAVAGI  635 (696)
T ss_pred             hheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc-ccCCCCccccCCC
Confidence            35555555 899999999999999999988 3336789999999999766643111100 000111 111110000    


Q ss_pred             ---CC-CCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013373          366 ---TP-DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF  422 (444)
Q Consensus       366 ---~~-~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l  422 (444)
                         .. +....-.++++...++...+++++.+-+.+.+.|.. +| ++.|+||.+|++++.
T Consensus       636 ~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~-~G-~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  636 PSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK-NG-ILLGIITKKDCLRHT  694 (696)
T ss_pred             CCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc-CC-eeEeeeehHHHHHhh
Confidence               00 000234789999999999999999999998876654 55 999999999999864

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.67  E-value=0.00012  Score=60.27  Aligned_cols=55  Identities=24%  Similarity=0.459  Sum_probs=49.2

Q ss_pred             CcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       279 ~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      .++.+    +|.. ++.++.+++++.++++.|.+.+.+.+||+|+ +++++|+++.+|+.+
T Consensus        58 ~~v~d----im~~-~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRD----VINR-KPVTARPNDPLREALNLMHEHNIRTLPVVDD-DGTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHH----hcCC-CCCEECCcCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHhhc
Confidence            56778    6776 7889999999999999999999999999998 789999999999863

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.62  E-value=0.00056  Score=70.24  Aligned_cols=137  Identities=9%  Similarity=0.172  Sum_probs=97.3

Q ss_pred             CCCCCCcHHHhhhhcCCC-CceEeeCC-CCHHHHHHHHHhCCCCEEEEe-cCCCCcEEEEEeHHHHHHHhhcCCCCCc--
Q 013373          198 EPFKSTTVRSIIKSYRWA-PFLPVATD-DSMLSVLLLLSKYRLRNVPII-EPGTPDIKNYITQSAVVQGLEGCKGRDW--  272 (444)
Q Consensus       198 ~~~~~~~v~di~~~~~~~-~~v~v~~~-~sl~~a~~~l~~~~i~~lpVv-d~~~~~l~Givt~~di~~~l~~~~~~~~--  272 (444)
                      +++..+-..++|...+.+ ++..+..+ .++.+...+|.+...+..||+ ++++.+++|++.++|+.-.+........  
T Consensus       538 ~e~~~t~~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~  617 (696)
T KOG0475|consen  538 SEFSSTLAIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFI  617 (696)
T ss_pred             cccccchhhhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccc
Confidence            334433445666644444 46666665 899999999999999888866 5556789999999999766642211100  


Q ss_pred             ----------ccccc-----cCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHH
Q 013373          273 ----------FDIIA-----SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI  337 (444)
Q Consensus       273 ----------~~~~~-----~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dl  337 (444)
                                .+...     ....++    +|.. .+.++...++...+++++++-+.+.+.|..  +|++.|+||++|+
T Consensus       618 ~~~~~~f~~~~~~~~~~~~~~~~lk~----il~~-tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~--~G~l~Giitkkd~  690 (696)
T KOG0475|consen  618 VTTSIYFNDPSPSAVAGIPSRLDLKD----ILDM-TPFTVTDLTPMETVVDLFRKLGLRQILVTK--NGILLGIITKKDC  690 (696)
T ss_pred             eecccccCCCCccccCCCCCCcCcee----eccC-CcccccccCcHHHHHHHHHhhCceEEEEcc--CCeeEeeeehHHH
Confidence                      00000     112233    5655 688999999999999999999999988887  7999999999999


Q ss_pred             HHHh
Q 013373          338 RHLL  341 (444)
Q Consensus       338 l~~l  341 (444)
                      ++..
T Consensus       691 l~~~  694 (696)
T KOG0475|consen  691 LRHT  694 (696)
T ss_pred             HHhh
Confidence            8763

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.51  E-value=0.00038  Score=46.65  Aligned_cols=47  Identities=32%  Similarity=0.579  Sum_probs=42.3

Q ss_pred             ceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHh
Q 013373          294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  341 (444)
Q Consensus       294 ~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l  341 (444)
                      +.++.+++++.++++.|.+++.+.+||+++ +++++|+++..+++..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDE-EGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECC-CCeEEEEEEHHHHHHhh
Confidence            567889999999999999999999999997 68999999999997654

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=97.03  E-value=0.0068  Score=60.92  Aligned_cols=145  Identities=11%  Similarity=0.082  Sum_probs=91.0

Q ss_pred             CCEEEEecCCCCcEEEEEeHHHHHHH-----hhcCCCCCcccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHH
Q 013373          238 LRNVPIIEPGTPDIKNYITQSAVVQG-----LEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKD  312 (444)
Q Consensus       238 i~~lpVvd~~~~~l~Givt~~di~~~-----l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~  312 (444)
                      ..++.++++  |+++..-+..+++..     ....  ........-.+..+    +|.+  ...+...+.. .+++.   
T Consensus       232 ~DrI~vl~~--G~iv~~g~~~ei~~~p~~~~~~~~--~~~~~~~~~l~a~~----~m~~--~~~~~~~~~~-~~~~~---  297 (382)
T TIGR03415       232 GNRIAIMEG--GRIIQHGTPEEIVLNPANDYVADF--VAHTNPLNVLTARS----LMRP--LTDLEHVDGG-WCVSD---  297 (382)
T ss_pred             CCEEEEEEC--CEEEEecCHHHHhhCcchHHHHHH--hcccCcccceeHHH----Hhcc--cccccccCcc-hhhhh---
Confidence            356777765  788877777777431     1110  00001112223444    5743  3333222222 44444   


Q ss_pred             cCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHH
Q 013373          313 NNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLA  392 (444)
Q Consensus       313 ~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~  392 (444)
                      ++.+.++|+|  .    |+++..+...+....      ...++.+ +..            ...++++++++.+++..+.
T Consensus       298 ~~~~~~~~~~--~----~~~~~~~~~~~~~~~------~~~~~~~-~~~------------~~~~~~~~~~~~~~~~~~~  352 (382)
T TIGR03415       298 RRDTWLFTID--K----QVRRRDAKLPVQAWA------AEQEVES-LEA------------APTVINPDTLMRDVLAARH  352 (382)
T ss_pred             cccceeEeec--c----ceecccchHhHhhcc------cccchhh-hcc------------cCcccCCCCcHHHHHHHHh
Confidence            7888899998  3    788877765543311      1224555 332            6788999999999999998


Q ss_pred             hcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          393 SKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       393 ~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      .++ .-++|+|+ | +++|+|++.+++..+..
T Consensus       353 ~~~-~~~~v~~~-~-~~~g~~~~~~~~~~~~~  381 (382)
T TIGR03415       353 RTG-GAILLVEN-G-RIVGVIGDDNIYHALLG  381 (382)
T ss_pred             cCC-CCeEEeeC-C-eEEEEEeHHHHHHHHhc
Confidence            877 45889986 6 99999999999998864

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.93  E-value=0.0017  Score=62.04  Aligned_cols=159  Identities=16%  Similarity=0.203  Sum_probs=107.3

Q ss_pred             CCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCccccc---ccCcccccccCCCCCCC-ceEec
Q 013373          223 DDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDII---ASQPISDLGLPFMSSDE-VITIQ  298 (444)
Q Consensus       223 ~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~---~~~~v~~l~l~im~~~~-~~~v~  298 (444)
                      +..+.+|+++     -+++.++.+  |+++.+=|+.+|+.--...+-..++..+   .-.+..+    +|...+ ...-.
T Consensus       222 tHDLdEAlri-----G~rIaimkd--G~ivQ~Gtp~eIl~~PAndYV~~Fv~~v~~~~VltA~~----IM~~~~~~~~~~  290 (386)
T COG4175         222 THDLDEALRI-----GDRIAIMKD--GEIVQVGTPEEILLNPANDYVRDFVRNVDRSRVLTAKD----IMRRPDLLIRKT  290 (386)
T ss_pred             ecCHHHHHhc-----cceEEEecC--CeEEEeCCHHHHHcCccHHHHHHHHhcCChhheeeHHH----hhcccccccccc
Confidence            3446777733     356777765  8999999999997532221111111111   1223444    565311 12222


Q ss_pred             CCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCCCeEe
Q 013373          299 SNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITC  378 (444)
Q Consensus       299 ~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v  378 (444)
                      +...-..+++.+.+...+.+.+++. .++.+|+++..++...                 .+.            ..+.++
T Consensus       291 ~~~~~~~al~~~~~~~~~~~~~~~~-~~~~~g~v~~~~~~~~-----------------~~~------------~~~~~v  340 (386)
T COG4175         291 PGDGPRVALKLLRDEGREYGYAVDR-GNKFVGVVSIDSLVKA-----------------ALI------------DDVLTV  340 (386)
T ss_pred             cccccchhhhhhhhccchhhHHHhc-cCceeeEEeccchhcc-----------------ccc------------cccccc
Confidence            3334456788888888877888885 7889999998886543                 112            267788


Q ss_pred             cCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          379 KLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       379 ~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      ..++++.+.+..+.+.. ..++|||+++ +++|+|++..++.++..
T Consensus       341 ~~d~~~~~~~~~~~~~~-~p~aVvde~~-r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         341 DADTPLSEILARIRQAP-CPVAVVDEDG-RYVGIISRGELLEALAR  384 (386)
T ss_pred             CccchHHHHHHHHhcCC-CceeEEcCCC-cEEEEecHHHHHHHHhc
Confidence            99999999998888766 4689999998 99999999999999875

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.17  E-value=0.049  Score=52.33  Aligned_cols=113  Identities=16%  Similarity=0.267  Sum_probs=82.4

Q ss_pred             CCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCc
Q 013373          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP  280 (444)
Q Consensus       201 ~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~  280 (444)
                      +-.++.+||...  ...+.-.+...-..++..+.+.....+.+++.. ++.+|+++..+.+..                 
T Consensus       272 ~VltA~~IM~~~--~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~-~~~~g~v~~~~~~~~-----------------  331 (386)
T COG4175         272 RVLTAKDIMRRP--DLLIRKTPGDGPRVALKLLRDEGREYGYAVDRG-NKFVGVVSIDSLVKA-----------------  331 (386)
T ss_pred             heeeHHHhhccc--ccccccccccccchhhhhhhhccchhhHHHhcc-CceeeEEeccchhcc-----------------
Confidence            345677888731  223333344455678888888777777778754 679999988776542                 


Q ss_pred             ccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373          281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (444)
Q Consensus       281 v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~  343 (444)
                        .     +.. ++.++..++++.+.+..+.+... .++|+|+ +++++|+++...++.++..
T Consensus       332 --~-----~~~-~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde-~~r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         332 --A-----LID-DVLTVDADTPLSEILARIRQAPC-PVAVVDE-DGRYVGIISRGELLEALAR  384 (386)
T ss_pred             --c-----ccc-cccccCccchHHHHHHHHhcCCC-ceeEEcC-CCcEEEEecHHHHHHHHhc
Confidence              1     222 67888999999999988887665 4889998 8999999999999998763

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=94.74  E-value=0.19  Score=50.51  Aligned_cols=110  Identities=19%  Similarity=0.157  Sum_probs=72.6

Q ss_pred             CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013373          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  279 (444)
Q Consensus       200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~  279 (444)
                      .+-.++.++|.    ........+ .. .+++.   ++...+.|+|.      |+++..+.........         ..
T Consensus       271 ~~~l~a~~~m~----~~~~~~~~~-~~-~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~~~~---------~~  326 (382)
T TIGR03415       271 LNVLTARSLMR----PLTDLEHVD-GG-WCVSD---RRDTWLFTIDK------QVRRRDAKLPVQAWAA---------EQ  326 (382)
T ss_pred             ccceeHHHHhc----ccccccccC-cc-hhhhh---cccceeEeecc------ceecccchHhHhhccc---------cc
Confidence            44457788885    212222222 22 34433   67888999984      6787777655433211         12


Q ss_pred             cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      .+.++     .. .+.++++++++.+++..+.+.+.. ++|+|  +|+++|+|+..+++..+.
T Consensus       327 ~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~--~~~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       327 EVESL-----EA-APTVINPDTLMRDVLAARHRTGGA-ILLVE--NGRIVGVIGDDNIYHALL  380 (382)
T ss_pred             chhhh-----cc-cCcccCCCCcHHHHHHHHhcCCCC-eEEee--CCeEEEEEeHHHHHHHHh
Confidence            23331     22 577889999999999998887754 88888  599999999999998864

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=93.13  E-value=1.3  Score=47.22  Aligned_cols=86  Identities=20%  Similarity=0.148  Sum_probs=59.7

Q ss_pred             HHHHHhhhccCCCChHHHH-HHHhhcCCccCCCCCCCCCeEEEeCCCCHHHHHHHHHHCCCccCceecCCCCCCCCcccc
Q 013373           19 YFEAIQSRKKLPHSLQETL-TAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKER   97 (444)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~i~v~~~~si~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~   97 (444)
                      .|+.|+-.|+||-=|.=.= +...-.+-|.++   +-.++..|..++|.+|--++|..+.+++.|++|+.+.      .-
T Consensus       562 iYDSII~IKklPYLPDlpps~~~~h~v~VE~i---MV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~es------mi  632 (931)
T KOG0476|consen  562 IYDSIIRIKKLPYLPDLPPSRSSVHTVKVEHI---MVTDVKYITKDTTYRELREALQTTTLRSFPLVESKES------MI  632 (931)
T ss_pred             hhhheeeeccCCcCCCCCCcccceeEEEeeee---ccccceeeeccCcHHHHHHHHHhCccceeccccCccc------ce
Confidence            4777888887774321100 001112233333   3568889999999999999999888999999998762      45


Q ss_pred             eeEEEehhHHHHHHHh
Q 013373           98 YLGIVDYSAIILWVLE  113 (444)
Q Consensus        98 ~~Giv~~~di~~~~l~  113 (444)
                      ++|.|....+...+-.
T Consensus       633 LlGSV~R~~L~~ll~~  648 (931)
T KOG0476|consen  633 LLGSVARRYLTALLQR  648 (931)
T ss_pred             eeehhHHHHHHHHHHh
Confidence            8999998888776644

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=91.49  E-value=0.95  Score=42.51  Aligned_cols=111  Identities=15%  Similarity=0.131  Sum_probs=69.7

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC---------C-ccccccccCcHHHHhccc
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK---------P-ELFSNFRQLTVRDFMNAV  362 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~---------~-~~~~~~~~~~v~~~m~~~  362 (444)
                      -++.|+.|  +.||+++-     .++.|.+  +|+++-+-+..+++..-.+         . ..++.+....+.+.+...
T Consensus       188 TivfVTHD--idEA~kLa-----dri~vm~--~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~  258 (309)
T COG1125         188 TIVFVTHD--IDEALKLA-----DRIAVMD--AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG  258 (309)
T ss_pred             EEEEEecC--HHHHHhhh-----ceEEEec--CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence            35666655  56777553     3578888  6999999997777543221         0 111222333455555421


Q ss_pred             CCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373          363 VPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  421 (444)
Q Consensus       363 ~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~  421 (444)
                      ..        ..--.........+++..+...+...+||||++| +++|+||+.+++..
T Consensus       259 ~~--------~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g-~~~G~vt~~~l~~~  308 (309)
T COG1125         259 EP--------ADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDG-RPLGTVTRADLLDE  308 (309)
T ss_pred             cc--------ccCCccccchhhHHHHHHHHhcCCceeEEECCCC-cEeeEEEHHHHhhh
Confidence            10        0011123334445588888888999999999998 99999999999875

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=91.37  E-value=1.8  Score=40.65  Aligned_cols=107  Identities=15%  Similarity=0.219  Sum_probs=67.0

Q ss_pred             CCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHH-----HhhcCCC--CCcccccccCcccccccCCCCCCC-
Q 013373          222 TDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ-----GLEGCKG--RDWFDIIASQPISDLGLPFMSSDE-  293 (444)
Q Consensus       222 ~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~-----~l~~~~~--~~~~~~~~~~~v~~l~l~im~~~~-  293 (444)
                      -+..+.+|+++-     .++.|++.  |+++.+-++.+|+.     |+....+  ...+..+....+.+    .|.... 
T Consensus       192 VTHDidEA~kLa-----dri~vm~~--G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~----~~~~~~~  260 (309)
T COG1125         192 VTHDIDEALKLA-----DRIAVMDA--GEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVAD----AVRRGEP  260 (309)
T ss_pred             EecCHHHHHhhh-----ceEEEecC--CeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHH----hhccccc
Confidence            345568888553     67888985  89999999877754     1111111  12222233334444    222111 


Q ss_pred             --ceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHH
Q 013373          294 --VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL  340 (444)
Q Consensus       294 --~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~  340 (444)
                        --.+.......+++..+...+...+||+|+ +|+++|.+|..+++..
T Consensus       261 ~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~-~g~~~G~vt~~~l~~~  308 (309)
T COG1125         261 ADGEPLLEGFVDRDALSDFLARGRSVLPVVDE-DGRPLGTVTRADLLDE  308 (309)
T ss_pred             ccCCccccchhhHHHHHHHHhcCCceeEEECC-CCcEeeEEEHHHHhhh
Confidence              112233344456787888899999999999 9999999999998754

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=90.85  E-value=1.1  Score=47.83  Aligned_cols=61  Identities=15%  Similarity=0.182  Sum_probs=51.8

Q ss_pred             CcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCC-CCcEEEEEeHHHHHHHhhcC
Q 013373          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG-TPDIKNYITQSAVVQGLEGC  267 (444)
Q Consensus       203 ~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~-~~~l~Givt~~di~~~l~~~  267 (444)
                      ..|+++|.    .++..+..+.|..+..+.+....++.+|++|+. +.-++|.|.++.+..++..+
T Consensus       588 v~VE~iMV----~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~  649 (931)
T KOG0476|consen  588 VKVEHIMV----TDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRH  649 (931)
T ss_pred             EEeeeecc----ccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhh
Confidence            46788888    789999999999999999877669999999864 44589999999999888664

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=87.44  E-value=0.87  Score=47.43  Aligned_cols=123  Identities=19%  Similarity=0.236  Sum_probs=84.2

Q ss_pred             CCCC-CCceEecCCCcHH-HHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCC
Q 013373          288 FMSS-DEVITIQSNELIL-EAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPT  365 (444)
Q Consensus       288 im~~-~~~~~v~~~~sl~-ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~  365 (444)
                      +|++ +++.....+..+. +........+++++||.+......+|.+=....+.+.....   .+...++.+++..    
T Consensus       209 vmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~~---~~~~~~v~~~~~~----  281 (498)
T KOG2118|consen  209 VMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVEV---PLEPLPVSESALL----  281 (498)
T ss_pred             hccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhcccc---ccccccchhhhcc----
Confidence            5654 3455666666665 55666778999999999864344444432333333332111   3446677888764    


Q ss_pred             CCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCc
Q 013373          366 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPN  428 (444)
Q Consensus       366 ~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~  428 (444)
                              ....++.++++.+.++.+.+.+.|.+.|.+. . .-+++++..|+ .....|..+
T Consensus       282 --------~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~-~-~~~~~~~l~~~-~~~~~ev~d  333 (498)
T KOG2118|consen  282 --------RLPLVPENMPLLDLLNEFQKGKSHMAVVRNG-H-VDIFVLTLEDL-EEVVKEVED  333 (498)
T ss_pred             --------ccccCCCcccHHHHHHHHhhhhceeEEEecC-C-cceeeEeccch-hhhcceecc
Confidence                    7788999999999999999999888888774 3 68999999998 665554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	444
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	1e-43
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	7e-22
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	2e-17
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	1e-14
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	1e-41
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	2e-12
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	7e-11
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	1e-09
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	6e-36
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	1e-14
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	4e-13
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	7e-32
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	5e-07
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	2e-29
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	1e-06
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	3e-04
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	2e-22
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	3e-21
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	2e-17
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	5e-14
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	2e-20
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	1e-11
3ddj_A	296	CBS domain-containing protein; structural genomics	5e-20
3ddj_A	296	CBS domain-containing protein; structural genomics	2e-19
3ddj_A	296	CBS domain-containing protein; structural genomics	7e-11
1pvm_A	184	Conserved hypothetical protein TA0289; structural	3e-19
1pvm_A	184	Conserved hypothetical protein TA0289; structural	3e-08
1pbj_A	125	Hypothetical protein; structural genomics, domain,	4e-19
1pbj_A	125	Hypothetical protein; structural genomics, domain,	9e-12
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	5e-19
4fry_A	157	Putative signal-transduction protein with CBS DOM;	7e-19
4fry_A	157	Putative signal-transduction protein with CBS DOM;	6e-10
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	1e-18
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	3e-12
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	3e-18
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	7e-10
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	3e-18
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	6e-09
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	3e-18
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	2e-09
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	2e-05
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	6e-18
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	2e-08
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	9e-18
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	2e-09
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	1e-17
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	4e-09
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	1e-05
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	2e-17
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	8e-10
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	2e-17
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	7e-07
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	2e-17
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	8e-09
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	4e-05
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	5e-17
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	2e-10
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	1e-16
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	1e-15
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	7e-08
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	7e-15
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	7e-09
1vr9_A	213	CBS domain protein/ACT domain protein; structural	7e-15
1vr9_A	213	CBS domain protein/ACT domain protein; structural	5e-08
1vr9_A	213	CBS domain protein/ACT domain protein; structural	9e-05
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	1e-14
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	2e-06
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	3e-12
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	8e-07
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	2e-11
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	7e-11
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	1e-09
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	5e-07
3fio_A	70	A cystathionine beta-synthase domain protein fused	5e-09
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	2e-08
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	4e-07
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	7e-07
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	7e-07
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	1e-06
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	2e-06
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	2e-05
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	2e-04
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	2e-04
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	6e-04

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score =  155 bits (392), Expect = 1e-43
 Identities = 42/245 (17%), Positives = 101/245 (41%), Gaps = 12/245 (4%)

Query: 185 RLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPII 244
           R ++     I + E  K  T R +     + P + ++ + S+   +  L + ++  +P+I
Sbjct: 96  RYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVI 155

Query: 245 EPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELIL 304
           +P + +    +T   +++ L+            S+ + +L +   +   +  +++   + 
Sbjct: 156 DPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQI--GTYANIAMVRTTTPVY 213

Query: 305 EAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVP 364
            A      + +  +PVV+ ++ ++V   S  D+ +L  +     N   ++V   +     
Sbjct: 214 VALGIFVQHRVSALPVVD-EKGRVVDIYSKFDVINLAAEK--TYNNLDVSVTKALQHRSH 270

Query: 365 TTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424
                      + C L  TL ++I+ L    VHR+ VV  E   V G+++L D++   + 
Sbjct: 271 YFE------GVLKCYLHETLEAIINRLVEAEVHRLVVV-DEHDVVKGIVSLSDILQALVL 323

Query: 425 EPPNH 429
                
Sbjct: 324 TGGEK 328

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 95.0 bits (236), Expect = 7e-22
 Identities = 22/153 (14%), Positives = 64/153 (41%), Gaps = 1/153 (0%)

Query: 290 SSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSN 349
           +S +++   ++  + +AF  +  N +   P+ + +++  VG ++I D  ++L +    + 
Sbjct: 43  TSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSAL 102

Query: 350 FRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEV 409
            +   + +                P +     ++L   + SL    +HR+ V+  E    
Sbjct: 103 VQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNT 162

Query: 410 VGVITLRDVIS-CFIFEPPNHLDNYFGFSVKDL 441
           + ++T + ++    +F        +   S+++L
Sbjct: 163 LYILTHKRILKFLKLFITEFPKPEFMSKSLEEL 195

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 81.9 bits (202), Expect = 2e-17
 Identities = 36/256 (14%), Positives = 78/256 (30%), Gaps = 15/256 (5%)

Query: 180 PTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLR 239
              +    E    V       KS     +I +      +   T   +      L    +R
Sbjct: 14  NEHSQETPESNSSVYTTF--MKSHRCYDLIPTSS--KLVVFDTSLQVKKAFFALVTNGVR 69

Query: 240 NVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW--FDIIASQPISDLGLPFMSS--DEVI 295
             P+ +         +T +  +  L             +    I      ++      ++
Sbjct: 70  AAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLV 129

Query: 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV 355
            I  N  + +A   +  N I  +PV++ +    +  ++ + I        L     +   
Sbjct: 130 CISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILK-----FLKLFITEFPK 184

Query: 356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITL 415
            +FM+  +      G        +  + +   +       V  + VV  E+  VV + + 
Sbjct: 185 PEFMSKSLEELQI-GTYANIAMVRTTTPVYVALGIFVQHRVSALPVV-DEKGRVVDIYSK 242

Query: 416 RDVISCFIFEPPNHLD 431
            DVI+    +  N+LD
Sbjct: 243 FDVINLAAEKTYNNLD 258

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 73.4 bits (180), Expect = 1e-14
 Identities = 40/295 (13%), Positives = 99/295 (33%), Gaps = 17/295 (5%)

Query: 55  GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLET 114
            +++       +  A   L    + +AP+           K+ ++G++  +  I  +   
Sbjct: 45  SKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSK-------KQSFVGMLTITDFINILHRY 97

Query: 115 AELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLA-AEK 173
            + A                          L    P A     V++        L   + 
Sbjct: 98  YKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP 157

Query: 174 GAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSI--IKSYRWAPFLPVATDDSMLSVLL 231
            +G        +    F K+ + E P      +S+  ++   +A    V T   +   L 
Sbjct: 158 ESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALG 217

Query: 232 LLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSS 291
           +  ++R+  +P+++     + +  ++  V+      K  +  D+  ++ +          
Sbjct: 218 IFVQHRVSALPVVDEKG-RVVDIYSKFDVINLAAE-KTYNNLDVSVTKALQHRSH--YFE 273

Query: 292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI-RHLLLKPE 345
             V+    +E +     R+ +  +  + VV+ +   + G VS+ DI + L+L   
Sbjct: 274 G-VLKCYLHETLEAIINRLVEAEVHRLVVVD-EHDVVKGIVSLSDILQALVLTGG 326

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score =  150 bits (379), Expect = 1e-41
 Identities = 46/248 (18%), Positives = 104/248 (41%), Gaps = 23/248 (9%)

Query: 187 HEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVAT--DDSMLSVLLLLSKYRLRNVPII 244
              F + I + + F+   +R + +     P   +      S++   L +SK R R +P+I
Sbjct: 87  SSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLI 146

Query: 245 ----EPGTPDIKNYITQSAVVQGL-EGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQS 299
               E G+  I + +TQ  +++ +   CK           P++ + +   S   + T   
Sbjct: 147 DVDGETGSEMIVSVLTQYRILKFISMNCKETAMLR----VPLNQMTIGTWS--NLATASM 200

Query: 300 NELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFM 359
              + +  K + + NI  +P+V   +  ++      D+ HL+   +   +   L+V + +
Sbjct: 201 ETKVYDVIKMLAEKNISAVPIVN-SEGTLLNVYESVDVMHLIQDGDY--SNLDLSVGEAL 257

Query: 360 NAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVI 419
                        +   TC+    L  +  ++    VHR++VV  E  ++ G+++L D++
Sbjct: 258 ------LKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVV-DENLKLEGILSLADIL 310

Query: 420 SCFIFEPP 427
           +  I++  
Sbjct: 311 NYIIYDKT 318

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 66.8 bits (163), Expect = 2e-12
 Identities = 16/139 (11%), Positives = 43/139 (30%), Gaps = 8/139 (5%)

Query: 291 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL----KPEL 346
           S  +I       +  +   +  NNI   P+ + +  K  G +++ D  +++         
Sbjct: 31  SFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSF 90

Query: 347 FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE 406
                ++     +                I      +L     +++     RI ++  + 
Sbjct: 91  PEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDG 150

Query: 407 ----AEVVGVITLRDVISC 421
                 +V V+T   ++  
Sbjct: 151 ETGSEMIVSVLTQYRILKF 169

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 62.2 bits (151), Expect = 7e-11
 Identities = 49/337 (14%), Positives = 109/337 (32%), Gaps = 44/337 (13%)

Query: 32  SLQETLTAAFARI-----PVLSFPNVPG-GRVIEIMADTTIPDAVKILSECNILSAPVKI 85
            +QET   A   I        S+  +P   R+I       +  ++ +L+  NI+SAP+  
Sbjct: 3   DVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPL-- 60

Query: 86  PDAPSSSDWKERYLGIVDYS---AIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGA 142
                      ++ G++  +    +I +  +++    A   +      G+          
Sbjct: 61  -----WDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAI 115

Query: 143 -LALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRL--HEDFYKVILQEEP 199
                   P         A   + A  +      G+        +       K I     
Sbjct: 116 PPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCK 175

Query: 200 FKSTTVRSIIKSYR--WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQ 257
             +     + +     W+     + +  +  V+ +L++  +  VPI+      + N    
Sbjct: 176 ETAMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEG-TLLNVYES 234

Query: 258 SAVVQGLEGCKGRDWFDIIASQPISDLGLP---FMSS-----DEVITIQSNELILEAFKR 309
                        D   +I     S+L L     +       D V T ++ + +   F  
Sbjct: 235 ------------VDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDA 282

Query: 310 MKDNNIGGIPVVEGQQKKIVGNVSIRDI-RHLLLKPE 345
           +K + +  + VV+ +  K+ G +S+ DI  +++    
Sbjct: 283 IKHSRVHRLFVVD-ENLKLEGILSLADILNYIIYDKT 318

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 58.4 bits (141), Expect = 1e-09
 Identities = 36/241 (14%), Positives = 77/241 (31%), Gaps = 30/241 (12%)

Query: 218 LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTP---------DIKNYITQSAVVQGLEGCK 268
           +       + + L LL+   + + P+ +             D  N I +           
Sbjct: 35  IVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVI-KYYYQSSSFPEA 93

Query: 269 GRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVV----EGQ 324
             +                     E I +     +++A   M  +    IP++    E  
Sbjct: 94  IAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETG 153

Query: 325 QKKIVGNVSIRDI-RHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLEST 383
            + IV  ++   I + + +  +  +  R   +              G  +   T  +E+ 
Sbjct: 154 SEMIVSVLTQYRILKFISMNCKETAMLRV-PLNQM---------TIGTWSNLATASMETK 203

Query: 384 LGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDNYFGFSVKDLLN 443
           +  VI  LA K++  + +V   E  ++ V    DV+        ++LD     SV + L 
Sbjct: 204 VYDVIKMLAEKNISAVPIV-NSEGTLLNVYESVDVMHLIQDGDYSNLD----LSVGEALL 258

Query: 444 Q 444
           +
Sbjct: 259 K 259

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score =  134 bits (338), Expect = 6e-36
 Identities = 34/244 (13%), Positives = 87/244 (35%), Gaps = 24/244 (9%)

Query: 190 FYKVILQEEPFKSTTVRSIIKSYRWA-----PFLPVATDDSMLSVLLLLSKYRLRNVPII 244
           ++    + E      +  +    R           +     +    L + + R   +P+I
Sbjct: 92  YFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLI 151

Query: 245 EP----GTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 300
           +         + + +TQ  +++                 PI DL +  ++ D + + Q  
Sbjct: 152 DQDEETHREIVVSVLTQYRILKF---VALNCRETHFLKIPIGDLNI--ITQDNMKSCQMT 206

Query: 301 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN 360
             +++  + +    +  +P+++ +   ++      D+  L+       N   L+V + + 
Sbjct: 207 TPVIDVIQMLTQGRVSSVPIID-ENGYLINVYEAYDVLGLI--KGGIYNDLSLSVGEALM 263

Query: 361 AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420
                           TC     L +++ ++    VHR +VV  +   +VGV+TL D++ 
Sbjct: 264 RRSDDFE------GVYTCTKNDKLSTIMDNIRKARVHRFFVV-DDVGRLVGVLTLSDILK 316

Query: 421 CFIF 424
             + 
Sbjct: 317 YILL 320

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 73.5 bits (180), Expect = 1e-14
 Identities = 37/254 (14%), Positives = 91/254 (35%), Gaps = 25/254 (9%)

Query: 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSA 259
             S T   ++        + + T   +   L +L +  + + P+ +  T      +T + 
Sbjct: 27  LNSKTSYDVLPVS--YRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTD 84

Query: 260 VVQGL-EGCKGRDWFDIIASQPISDLG----LPFMSSDEVITIQSNELILEAFKRMKDNN 314
            +  +       D F+++    +  L        +   +  +I  +  + EA  +M ++ 
Sbjct: 85  FINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESR 144

Query: 315 IGGIPVV----EGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSG 370
            G IP++    E  ++ +V  ++   I   +      ++F ++ + D             
Sbjct: 145 SGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLN---------II 195

Query: 371 KVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHL 430
             +   +C++ + +  VI  L    V  + ++  E   ++ V    DV+        N L
Sbjct: 196 TQDNMKSCQMTTPVIDVIQMLTQGRVSSVPII-DENGYLINVYEAYDVLGLIKGGIYNDL 254

Query: 431 DNYFGFSVKDLLNQ 444
                 SV + L +
Sbjct: 255 SL----SVGEALMR 264

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 69.2 bits (169), Expect = 4e-13
 Identities = 47/315 (14%), Positives = 101/315 (32%), Gaps = 40/315 (12%)

Query: 47  LSFPNVPG-GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYS 105
            S+  +P   R+I +     +  ++ +L + +I+SAP+             R+ G++  +
Sbjct: 31  TSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSK-------TSRFAGLLTTT 83

Query: 106 AIILWVL------ETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVA 159
             I  +       +  EL       G                ++        A   +  +
Sbjct: 84  DFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLES 143

Query: 160 AAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLP 219
            +G         E                 F  +  +E  F    +  +           
Sbjct: 144 RSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDL-NIITQDNMKS 202

Query: 220 VATDDSMLSVLLLLSKYRLRNVPII-EPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS 278
                 ++ V+ +L++ R+ +VPII E G   + N                 D   +I  
Sbjct: 203 CQMTTPVIDVIQMLTQGRVSSVPIIDENGY--LINVYEA------------YDVLGLIKG 248

Query: 279 QPISDLGLP---FMS-----SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVG 330
              +DL L     +       + V T   N+ +      ++   +    VV+    ++VG
Sbjct: 249 GIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDV-GRLVG 307

Query: 331 NVSIRDI-RHLLLKP 344
            +++ DI +++LL  
Sbjct: 308 VLTLSDILKYILLGS 322

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score =  117 bits (296), Expect = 7e-32
 Identities = 27/149 (18%), Positives = 65/149 (43%), Gaps = 12/149 (8%)

Query: 278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
             PI DL +  ++ D + + Q    +++  + +    +  +P+++     ++      D+
Sbjct: 7   KIPIGDLNI--ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENG-YLINVYEAYDV 63

Query: 338 RHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVH 397
              L+K  ++++   L+V + +         S       TC     L +++ ++    VH
Sbjct: 64  LG-LIKGGIYNDLS-LSVGEAL------MRRSDDFEGVYTCTKNDKLSTIMDNIRKARVH 115

Query: 398 RIYVVAGEEAEVVGVITLRDVISCFIFEP 426
           R +VV  +   +VGV+TL D++   +   
Sbjct: 116 RFFVV-DDVGRLVGVLTLSDILKYILLGS 143

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 47.9 bits (115), Expect = 5e-07
 Identities = 28/155 (18%), Positives = 64/155 (41%), Gaps = 22/155 (14%)

Query: 196 QEEPFKSTTVRSI-IKSYRWAPFLPVAT---DDSMLSVLLLLSKYRLRNVPII-EPGTP- 249
           +E  F    +  + I +        + +      ++ V+ +L++ R+ +VPII E G   
Sbjct: 1   RETHFLKIPIGDLNIITQD-----NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLI 55

Query: 250 DIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD-LGLPFMSSDEVITIQSNELILEAFK 308
           ++        V+  ++G    D      S  + + L       + V T   N+ +     
Sbjct: 56  NV---YEAYDVLGLIKGGIYNDL-----SLSVGEALMRRSDDFEGVYTCTKNDKLSTIMD 107

Query: 309 RMKDNNIGGIPVVEGQQKKIVGNVSIRDI-RHLLL 342
            ++   +    VV+    ++VG +++ DI +++LL
Sbjct: 108 NIRKARVHRFFVVDD-VGRLVGVLTLSDILKYILL 141

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 95.6 bits (238), Expect = 2e-22
 Identities = 42/221 (19%), Positives = 84/221 (38%), Gaps = 24/221 (10%)

Query: 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV 261
           +  VR I++       + +  +  +   +       +   PI+      + + IT+  V+
Sbjct: 83  NEPVREIMEE----NVITLKENADIDEAIETFLTKNVGGAPIVNDEN-QLISLITERDVI 137

Query: 262 QGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVV 321
           + L      +         I D    +++ D VI     E + +  + M  N    +PVV
Sbjct: 138 RALLDKIDENE-------VIDD----YITRD-VIVATPGERLKDVARTMVRNGFRRLPVV 185

Query: 322 EGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLE 381
                ++VG ++  D   LL     F++ +   VR+  N  +    +       IT K  
Sbjct: 186 SEG--RLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNVRM----EEIMKRDVITAKEG 239

Query: 382 STLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF 422
             L  +   + +  +  + VV  E   + G+IT +DV+  F
Sbjct: 240 DKLKKIAEIMVTNDIGALPVV-DENLRIKGIITEKDVLKYF 279

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 92.1 bits (229), Expect = 3e-21
 Identities = 42/207 (20%), Positives = 81/207 (39%), Gaps = 24/207 (11%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL-EGCKGRDWFDIIAS 278
           V    ++   L+ +++ + R +P++  G   +   IT   +V  +  G K     +    
Sbjct: 17  VYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHER 76

Query: 279 QPISDLGLP---FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 335
             ++ +  P    M  + VIT++ N  I EA +     N+GG P+V  +  +++  ++ R
Sbjct: 77  NFLAAINEPVREIMEEN-VITLKENADIDEAIETFLTKNVGGAPIVNDEN-QLISLITER 134

Query: 336 DIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKS 395
           D+   LL     +      + D++                I       L  V  ++    
Sbjct: 135 DVIRALLDKIDENE----VIDDYITR------------DVIVATPGERLKDVARTMVRNG 178

Query: 396 VHRIYVVAGEEAEVVGVITLRDVISCF 422
             R+ VV   E  +VG+IT  D I   
Sbjct: 179 FRRLPVV--SEGRLVGIITSTDFIKLL 203

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 81.0 bits (200), Expect = 2e-17
 Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 3/132 (2%)

Query: 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF 347
             +   ++T+     I +A   M +N    +PVV     K+VG ++  DI   +     +
Sbjct: 9   AQNKK-IVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKY 67

Query: 348 SNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEA 407
           +  R+   R+F+ A+     +  +    IT K  + +   I +  +K+V     +  +E 
Sbjct: 68  NLIREKHERNFLAAINEPVREIME-ENVITLKENADIDEAIETFLTKNVGGA-PIVNDEN 125

Query: 408 EVVGVITLRDVI 419
           +++ +IT RDVI
Sbjct: 126 QLISLITERDVI 137

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 70.9 bits (174), Expect = 5e-14
 Identities = 43/296 (14%), Positives = 92/296 (31%), Gaps = 47/296 (15%)

Query: 56  RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETA 115
           +++ +   TTI  A+  ++E      PV             + +GI+    I+   +   
Sbjct: 13  KIVTVYPTTTIRKALMTMNENKYRRLPVVNAG-------NNKVVGIITSMDIV-DFMGGG 64

Query: 116 ELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGA 175
                                V  +      M               A         K  
Sbjct: 65  SKYNLIREKHERNFLAAINEPVREI------MEENVITLKENADIDEAIE---TFLTKNV 115

Query: 176 GKDAP--TAADRL-----HEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLS 228
           G  AP     ++L       D  +  L ++  ++  +   I        +     + +  
Sbjct: 116 GG-APIVNDENQLISLITERDVIRA-LLDKIDENEVIDDYITR----DVIVATPGERLKD 169

Query: 229 VLLLLSKYRLRNVPIIEPGTP-------DIKNYITQSAVVQGLEGCKGRDWFDIIASQPI 281
           V   + +   R +P++  G         D    +        ++    R+    I +  +
Sbjct: 170 VARTMVRNGFRRLPVVSEGRLVGIITSTDFIKLLGSDWAFNHMQTGNVRE----ITNVRM 225

Query: 282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
            +     M  D VIT +  + + +  + M  N+IG +PVV+    +I G ++ +D+
Sbjct: 226 EE----IMKRD-VITAKEGDKLKKIAEIMVTNDIGALPVVDE-NLRIKGIITEKDV 275

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 86.1 bits (214), Expect = 2e-20
 Identities = 30/144 (20%), Positives = 63/144 (43%), Gaps = 24/144 (16%)

Query: 276 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 335
           +  + + +     M +  VI++  +  + +  K M + NIG + VV+G   K VG ++ R
Sbjct: 1   MEEEIVKEY----MKTQ-VISVTKDAKLNDIAKVMTEKNIGSVIVVDGN--KPVGIITER 53

Query: 336 DIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKS 395
           DI   + K +           +FM      T         IT + +S +   +  +   +
Sbjct: 54  DIVKAIGKGKSLE----TKAEEFM------TAS------LITIREDSPITGALALMRQFN 97

Query: 396 VHRIYVVAGEEAEVVGVITLRDVI 419
           +  + VV  ++  + G+I++RD+ 
Sbjct: 98  IRHLPVV-DDKGNLKGIISIRDIT 120

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 30/147 (20%), Positives = 64/147 (43%), Gaps = 25/147 (17%)

Query: 201 KSTTVRSIIKSYRWAPFLPVAT---DDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQ 257
           +   V+  +K+        V +   D  +  +  ++++  + +V +++   P     IT+
Sbjct: 2   EEEIVKEYMKT-------QVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKP--VGIITE 52

Query: 258 SAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGG 317
             +V+ +   KG+            +    FM++  +ITI+ +  I  A   M+  NI  
Sbjct: 53  RDIVKAIG--KGKS-----LETKAEE----FMTAS-LITIREDSPITGALALMRQFNIRH 100

Query: 318 IPVVEGQQKKIVGNVSIRDIRHLLLKP 344
           +PVV+  +  + G +SIRDI   +   
Sbjct: 101 LPVVDD-KGNLKGIISIRDITRAIDDM 126

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 89.1 bits (221), Expect = 5e-20
 Identities = 42/255 (16%), Positives = 90/255 (35%), Gaps = 36/255 (14%)

Query: 192 KVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDI 251
               +   F+   + +++          ++ +D + S    +++  +  + +       +
Sbjct: 9   HHHHENLYFQGMNIETLMIK----NPPILSKEDRLGSAFKKINEGGIGRIIVANEKIEGL 64

Query: 252 KNYITQS----AVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAF 307
              +T       V    +    +     I++ PI D    +M+ +  +T+ +      A 
Sbjct: 65  ---LTTRDLLSTVESYCKDSCSQGDLYHISTTPIID----YMTPN-PVTVYNTSDEFTAI 116

Query: 308 KRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP 367
             M   N G +PVV+    K VG V+ R+   L              V+ FM+       
Sbjct: 117 NIMVTRNFGSLPVVD-INDKPVGIVTEREFLLLYKD-----LDEIFPVKVFMST------ 164

Query: 368 DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPP 427
                    T   E  L   +  +  +   R+ V+  ++ +VVG++T+ + I        
Sbjct: 165 ------KVQTIYKEVRLDQAVKLMLRRGFRRLPVI-DDDNKVVGIVTVVNAIKQLAKAVD 217

Query: 428 NHLDNYFG-FSVKDL 441
               +YF    VKD+
Sbjct: 218 KLDPDYFYGKVVKDV 232

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 87.1 bits (216), Expect = 2e-19
 Identities = 34/229 (14%), Positives = 79/229 (34%), Gaps = 35/229 (15%)

Query: 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQ 257
               +T +   +        + V       + + ++      ++P+++         +T+
Sbjct: 88  YHISTTPIIDYMTP----NPVTVYNTSDEFTAINIMVTRNFGSLPVVDIND-KPVGIVTE 142

Query: 258 SAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGG 317
              +   +        D+    P+      FMS+  V TI     + +A K M       
Sbjct: 143 REFLLLYK--------DLDEIFPVKV----FMSTK-VQTIYKEVRLDQAVKLMLRRGFRR 189

Query: 318 IPVVEGQQKKIVGNVSIRDIRHLLLKP---ELFSNFRQLTVRDFMNAVVPTTPDSGKVNP 374
           +PV++    K+VG V++ +    L K         F    V+D M               
Sbjct: 190 LPVID-DDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVT------------N 236

Query: 375 PITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI 423
            +T    +++      +  K +  + ++  ++  + G+IT RD++    
Sbjct: 237 LVTIDELASVNRAAAEMIVKRIGSLLIL-NKDNTIRGIITERDLLIALH 284

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 61.7 bits (150), Expect = 7e-11
 Identities = 38/299 (12%), Positives = 91/299 (30%), Gaps = 51/299 (17%)

Query: 57  VIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIV---DYSAIILWVLE 113
              +  +  +  A K ++E  I    V            E+  G++   D  + +    +
Sbjct: 30  PPILSKEDRLGSAFKKINEGGIGRIIV----------ANEKIEGLLTTRDLLSTVESYCK 79

Query: 114 TAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEK 173
            +      + + T                    MT        T     A     +   +
Sbjct: 80  DSCSQGDLYHISTTPIIDY--------------MTPNPVTVYNTSDEFTAIN---IMVTR 122

Query: 174 GAGKDAP--TAADRL-----HEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSM 226
             G   P     D+        +F  +   ++  +   V+  + +        +  +  +
Sbjct: 123 NFGS-LPVVDINDKPVGIVTEREFLLLY--KDLDEIFPVKVFMST----KVQTIYKEVRL 175

Query: 227 LSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGL 286
              + L+ +   R +P+I+     +   +T    ++ L     +   D    + + D+  
Sbjct: 176 DQAVKLMLRRGFRRLPVIDDDN-KVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDV-- 232

Query: 287 PFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE 345
             M ++ ++TI     +  A   M    IG + ++      I G ++ RD+   L    
Sbjct: 233 --MVTN-LVTIDELASVNRAAAEMIVKRIGSLLILNKDN-TIRGIITERDLLIALHHIL 287

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 84.4 bits (209), Expect = 3e-19
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 17/132 (12%)

Query: 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF 347
            M+S+   T+  N  + +A K M +N++ G+ V +      VG +S R I    +     
Sbjct: 14  IMNSN-FKTVNWNTTVFDAVKIMNENHLYGLVVKDD-NGNDVGLLSERSIIKRFIPR--N 69

Query: 348 SNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEA 407
               ++ +R  M              P    K +  +  V   L+   + R  VV  +  
Sbjct: 70  KKPDEVPIRLVMRK------------PIPKVKSDYDVKDVAAYLSENGLERCAVV-DDPG 116

Query: 408 EVVGVITLRDVI 419
            VVG++TL D+ 
Sbjct: 117 RVVGIVTLTDLS 128

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 15/144 (10%), Positives = 57/144 (39%), Gaps = 12/144 (8%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279
           V  + ++   + ++++  L  + + +    +    +++ ++++     + +         
Sbjct: 22  VNWNTTVFDAVKIMNENHLYGLVVKD-DNGNDVGLLSERSIIKRFIP-RNKK----PDEV 75

Query: 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339
           PI  +    M    +  ++S+  + +    + +N +    VV+    ++VG V++ D+  
Sbjct: 76  PIRLV----MRKP-IPKVKSDYDVKDVAAYLSENGLERCAVVDDP-GRVVGIVTLTDLSR 129

Query: 340 LLLKPELFSNFRQLTVRDFMNAVV 363
            L +  +         +D+ +   
Sbjct: 130 YLSRASITDILLSHRTKDYQHLCP 153

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 81.8 bits (203), Expect = 4e-19
 Identities = 27/135 (20%), Positives = 53/135 (39%), Gaps = 20/135 (14%)

Query: 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS 348
           M +D V TI     + +  +   +N  G   VV+      VG V+  D+   + + +  +
Sbjct: 7   MVTD-VDTIDITASLEDVLRNYVENAKGSSVVVKEG--VRVGIVTTWDVLEAIAEGDDLA 63

Query: 349 NFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAE 408
               + V + M        D       +T    +T+      +    V R+ V   E+ E
Sbjct: 64  E---VKVWEVM------ERD------LVTISPRATIKEAAEKMVKNVVWRLLVE--EDDE 106

Query: 409 VVGVITLRDVISCFI 423
           ++GVI+  D++   +
Sbjct: 107 IIGVISATDILRAKM 121

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 61.0 bits (149), Expect = 9e-12
 Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 15/118 (12%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279
           +    S+  VL    +    +  +++ G       +T   V++ +   +G D    +A  
Sbjct: 14  IDITASLEDVLRNYVENAKGSSVVVKEGVR--VGIVTTWDVLEAIA--EGDD----LAEV 65

Query: 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
            + +     M  D ++TI     I EA ++M  N +  + V E    +I+G +S  DI
Sbjct: 66  KVWE----VMERD-LVTISPRATIKEAAEKMVKNVVWRLLVEEDD--EIIGVISATDI 116

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 81.8 bits (203), Expect = 5e-19
 Identities = 27/151 (17%), Positives = 60/151 (39%), Gaps = 25/151 (16%)

Query: 269 GRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKI 328
           G D F +       D+    M++  V  +  +E +  A + M++++IG +P+      ++
Sbjct: 1   GIDPFTMT---TARDI----MNAG-VTCVGEHETLTAAAQYMREHDIGALPICG-DDDRL 51

Query: 329 VGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVI 388
            G ++ RDI    L   L  +    T  +                        +++  ++
Sbjct: 52  HGMLTDRDIVIKGLAAGL--DPNTATAGELARD------------SIYYVDANASIQEML 97

Query: 389 HSLASKSVHRIYVVAGEEAEVVGVITLRDVI 419
           + +    V R+ V+   E  +VG++T  D+ 
Sbjct: 98  NVMEEHQVRRVPVI--SEHRLVGIVTEADIA 126

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 82.3 bits (204), Expect = 7e-19
 Identities = 25/137 (18%), Positives = 56/137 (40%), Gaps = 18/137 (13%)

Query: 290 SSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSN 349
           S   + T+  N+ + +A K M +  IG + VV+G    I G V+ RD    ++  E   +
Sbjct: 19  SGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGD--DIAGIVTERDYARKVVLQER--S 74

Query: 350 FRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEV 409
            +   V + M A                 +   +    +  +    +  + V+  +  ++
Sbjct: 75  SKATRVEEIMTA------------KVRYVEPSQSTDECMALMTEHRMRHLPVL--DGGKL 120

Query: 410 VGVITLRDVISCFIFEP 426
           +G+I++ D++   I + 
Sbjct: 121 IGLISIGDLVKSVIADQ 137

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 56.9 bits (138), Expect = 6e-10
 Identities = 25/154 (16%), Positives = 61/154 (39%), Gaps = 31/154 (20%)

Query: 202 STTVRSI--IKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTP-------DIK 252
           STTV  I   K         V  +D +   + L+++  +  + +++           D  
Sbjct: 6   STTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYA 65

Query: 253 NYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKD 312
                  VV      + R       +  + ++    M++  V  ++ ++   E    M +
Sbjct: 66  R-----KVVL-----QERSS----KATRVEEI----MTAK-VRYVEPSQSTDECMALMTE 106

Query: 313 NNIGGIPVVEGQQKKIVGNVSIRDI-RHLLLKPE 345
           + +  +PV++G   K++G +SI D+ + ++   +
Sbjct: 107 HRMRHLPVLDG--GKLIGLISIGDLVKSVIADQQ 138

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 80.7 bits (200), Expect = 1e-18
 Identities = 22/129 (17%), Positives = 55/129 (42%), Gaps = 18/129 (13%)

Query: 291 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNF 350
              V+ I  ++ +  A ++M  +NIG + V++ +  K+VG ++ RD        +     
Sbjct: 16  GHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDE--KLVGILTERDFSRKSYLLDK--PV 71

Query: 351 RQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVV 410
           +   V++ M                    L +T    +  +    V  + V+  ++ +V+
Sbjct: 72  KDTQVKEIMTR------------QVAYVDLNNTNEDCMALITEMRVRHLPVL--DDGKVI 117

Query: 411 GVITLRDVI 419
           G++++ D++
Sbjct: 118 GLLSIGDLV 126

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 62.6 bits (153), Expect = 3e-12
 Identities = 17/152 (11%), Positives = 52/152 (34%), Gaps = 30/152 (19%)

Query: 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTP-------DIKNYI 255
            TV+ +++         +  DDS+ + +  ++   +  + +++           D     
Sbjct: 6   KTVKHLLQEKGHTVVA-IGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSR-- 62

Query: 256 TQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNI 315
                         +   D      + +     M+   V  +  N    +    + +  +
Sbjct: 63  ---KSYL-----LDKPVKDT----QVKE----IMTRQ-VAYVDLNNTNEDCMALITEMRV 105

Query: 316 GGIPVVEGQQKKIVGNVSIRDI-RHLLLKPEL 346
             +PV++    K++G +SI D+ +  + + + 
Sbjct: 106 RHLPVLDD--GKVIGLLSIGDLVKDAISQHQF 135

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 80.0 bits (198), Expect = 3e-18
 Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 23/146 (15%)

Query: 278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
             PI       M+   ++ ++ +  + EA + M + ++G + V+      +VG  +  DI
Sbjct: 6   KAPIKVY----MTKK-LLGVKPSTSVQEASRLMMEFDVGSLVVINDDG-NVVGFFTKSDI 59

Query: 338 RHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVH 397
              ++ P L  +   + V   M      T +       IT  + + LG V+  +A   + 
Sbjct: 60  IRRVIVPGLPYD---IPVERIM------TRN------LITANVNTPLGEVLRKMAEHRIK 104

Query: 398 RIYVVAGEEAEVVGVITLRDVISCFI 423
            I +   EE ++VG+ TL D++    
Sbjct: 105 HILIE--EEGKIVGIFTLSDLLEASR 128

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 56.1 bits (136), Expect = 7e-10
 Identities = 25/153 (16%), Positives = 53/153 (34%), Gaps = 35/153 (22%)

Query: 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPII-EPGTP-------DIKN 253
              ++  +        L V    S+     L+ ++ + ++ +I + G         DI  
Sbjct: 6   KAPIKVYMTK----KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIR 61

Query: 254 YITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDN 313
            +             G  +       P+       M+ + +IT   N  + E  ++M ++
Sbjct: 62  RVIV----------PGLPY-----DIPVER----IMTRN-LITANVNTPLGEVLRKMAEH 101

Query: 314 NIGGIPVVEGQQKKIVGNVSIRDI-RHLLLKPE 345
            I  I + E    KIVG  ++ D+      + E
Sbjct: 102 RIKHILIEEE--GKIVGIFTLSDLLEASRRRLE 132

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 80.4 bits (199), Expect = 3e-18
 Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 21/141 (14%)

Query: 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP--- 344
            M+     T+     + +A   M+  +I  +P+V+   KK++G VS RD+          
Sbjct: 10  MMTRH-PHTLLRTHTLNDAKHLMEALDIRHVPIVDA-NKKLLGIVSQRDLLAAQESSLQR 67

Query: 345 --ELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVV 402
             +  S   +  + + M        D        +   ++ L      +    +  + VV
Sbjct: 68  SAQGDSLAFETPLFEVM------HTD------VTSVAPQAGLKESAIYMQKHKIGCLPVV 115

Query: 403 AGEEAEVVGVITLRDVISCFI 423
              +  +VG+IT  D ++  I
Sbjct: 116 --AKDVLVGIITDSDFVTIAI 134

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 53.9 bits (130), Expect = 6e-09
 Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 18/131 (13%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNY----ITQSAVVQGLEGCKGR--DWF 273
           +    ++     L+    +R+VPI+     D        ++Q  ++   E    R     
Sbjct: 18  LLRTHTLNDAKHLMEALDIRHVPIV-----DANKKLLGIVSQRDLLAAQESSLQRSAQGD 72

Query: 274 DIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVS 333
            +    P+ ++    M +D V ++     + E+   M+ + IG +PVV      +VG ++
Sbjct: 73  SLAFETPLFEV----MHTD-VTSVAPQAGLKESAIYMQKHKIGCLPVVAK--DVLVGIIT 125

Query: 334 IRDIRHLLLKP 344
             D   + +  
Sbjct: 126 DSDFVTIAINL 136

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 80.1 bits (198), Expect = 3e-18
 Identities = 25/135 (18%), Positives = 45/135 (33%), Gaps = 19/135 (14%)

Query: 288 FM-SSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL 346
            M SS++V  +Q    +  A   +  +    IPV++    K+ G +S   I   +L  E 
Sbjct: 20  LMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLD-PMYKLHGLISTAMILDGILGLER 78

Query: 347 FS--NFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAG 404
                  ++ V   M                   KLE +    +        H       
Sbjct: 79  IEFERLEEMKVEQVMK------------QDIPVLKLEDSFAKALEMTID---HPFICAVN 123

Query: 405 EEAEVVGVITLRDVI 419
           E+    G++T R ++
Sbjct: 124 EDGYFEGILTRRAIL 138

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 23/151 (15%), Positives = 57/151 (37%), Gaps = 28/151 (18%)

Query: 195 LQEEPFKSTTVRSIIKSYRWAPFLPVAT---DDSMLSVLLLLSKYRLRNVPIIEP----- 246
           + ++ F+   V+ ++          VA     + +   LL+L K     +P+++P     
Sbjct: 7   IPKDEFQQIFVKDLMI-----SSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLH 61

Query: 247 GTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEA 306
           G       I+ + ++ G+ G +  ++ + +    +       M  D +  ++  +   +A
Sbjct: 62  GL------ISTAMILDGILGLERIEF-ERLEEMKVEQ----VMKQD-IPVLKLEDSFAKA 109

Query: 307 FKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
            +   D+    I  V        G ++ R I
Sbjct: 110 LEMTIDHPF--ICAVNEDG-YFEGILTRRAI 137

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 12/97 (12%), Positives = 31/97 (31%), Gaps = 11/97 (11%)

Query: 347 FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE 406
              F+Q+ V+D M                   ++ + L   +  L       I V+    
Sbjct: 9   KDEFQQIFVKDLM------ISSE----KVAHVQIGNGLEHALLVLVKSGYSAIPVL-DPM 57

Query: 407 AEVVGVITLRDVISCFIFEPPNHLDNYFGFSVKDLLN 443
            ++ G+I+   ++   +       +      V+ ++ 
Sbjct: 58  YKLHGLISTAMILDGILGLERIEFERLEEMKVEQVMK 94

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 79.3 bits (196), Expect = 9e-18
 Identities = 26/161 (16%), Positives = 60/161 (37%), Gaps = 26/161 (16%)

Query: 269 GRDWFDIIASQP----ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ 324
           G+    ++A +     + D      S    + I  N  + +A   M   ++G + VV+ +
Sbjct: 3   GKTGTQLLADKLKKLQVKDF----QSIP--VVIHENVSVYDAICTMFLEDVGTLFVVD-R 55

Query: 325 QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTL 384
              +VG +S +D+    +  +       + V   M           ++     C+ E  +
Sbjct: 56  DAVLVGVLSRKDLLRASIGQQ---ELTSVPVHIIMT----------RMPNITVCRREDYV 102

Query: 385 GSVIHSLASKSVHRIYVV--AGEEAEVVGVITLRDVISCFI 423
             +   L  K +  + V+    +  EV+G +T  ++    +
Sbjct: 103 MDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILV 143

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 17/154 (11%), Positives = 59/154 (38%), Gaps = 23/154 (14%)

Query: 195 LQEEPFKSTTVRSIIKSYRWAPFLPV--ATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIK 252
           L  +  K   V+            PV    + S+   +  +    +  + +++     + 
Sbjct: 9   LLADKLKKLQVKDFQSI-------PVVIHENVSVYDAICTMFLEDVGTLFVVDRDA-VLV 60

Query: 253 NYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD-EVITIQSNELILEAFKRMK 311
             +++  +++   G +       + S P+       M+    +   +  + +++  K + 
Sbjct: 61  GVLSRKDLLRASIGQQE------LTSVPVHI----IMTRMPNITVCRREDYVMDIAKHLI 110

Query: 312 DNNIGGIPVVE--GQQKKIVGNVSIRDIRHLLLK 343
           +  I  +PV++   +  +++G V+  ++  +L+ 
Sbjct: 111 EKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVS 144

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 79.0 bits (195), Expect = 1e-17
 Identities = 24/150 (16%), Positives = 53/150 (35%), Gaps = 23/150 (15%)

Query: 273 FDIIASQPISDLGLPFM-SSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGN 331
            +      +      F+  +D+V  +Q    +  A   +       IPV++    K+ G 
Sbjct: 5   HNEFMQMTVKP----FLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLD-TSYKLHGL 59

Query: 332 VSIRDIRHLLLKPELFS--NFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIH 389
           +S+  +   +L  E         + V + MN  +P       +        + +L   + 
Sbjct: 60  ISMTMMMDAILGLERIEFERLETMKVEEVMNRNIPR------LRL------DDSLMKAVG 107

Query: 390 SLASKSVHRIYVVAGEEAEVVGVITLRDVI 419
            + +   H    V  ++    G+ T R+V+
Sbjct: 108 LIVN---HPFVCVENDDGYFAGIFTRREVL 134

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 54.4 bits (131), Expect = 4e-09
 Identities = 15/123 (12%), Positives = 52/123 (42%), Gaps = 20/123 (16%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIEP-----GTPDIKNYITQSAVVQGLEGCKGRDWFD 274
           V   + +   LL+L+K     +P+++      G       I+ + ++  + G +  + F+
Sbjct: 26  VQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGL------ISMTMMMDAILGLERIE-FE 78

Query: 275 IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSI 334
            + +  + +     M+ + +  ++ ++ +++A   + ++    + V         G  + 
Sbjct: 79  RLETMKVEE----VMNRN-IPRLRLDDSLMKAVGLIVNHPF--VCVENDDG-YFAGIFTR 130

Query: 335 RDI 337
           R++
Sbjct: 131 REV 133

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 13/95 (13%), Positives = 33/95 (34%), Gaps = 11/95 (11%)

Query: 347 FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE 406
            + F Q+TV+ F+       P           +  + L   +  L       I V+    
Sbjct: 5   HNEFMQMTVKPFL------IPAD----KVAHVQPGNYLDHALLVLTKTGYSAIPVL-DTS 53

Query: 407 AEVVGVITLRDVISCFIFEPPNHLDNYFGFSVKDL 441
            ++ G+I++  ++   +       +      V+++
Sbjct: 54  YKLHGLISMTMMMDAILGLERIEFERLETMKVEEV 88

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 78.5 bits (194), Expect = 2e-17
 Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 17/129 (13%)

Query: 291 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNF 350
             +V+T+  +  I EA   +  + IG + V +     ++G  + RD+   +         
Sbjct: 34  GRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA-DGVVLGIFTERDLVKAVAGQGA--AS 90

Query: 351 RQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVV 410
            Q +V   M      T +       + C+  ST   ++  +       + V   E   + 
Sbjct: 91  LQQSVSVAM------TKN------VVRCQHNSTTDQLMEIMTGGRFRHVPVE--ENGRLA 136

Query: 411 GVITLRDVI 419
           G+I++ DV+
Sbjct: 137 GIISIGDVV 145

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 56.5 bits (137), Expect = 8e-10
 Identities = 26/168 (15%), Positives = 54/168 (32%), Gaps = 33/168 (19%)

Query: 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEP-GTP-------DIKN 253
           +T V+ ++          V  D S+      L  +++  V + +  G         D+  
Sbjct: 23  ATFVKDLLDRKGRDVVT-VGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVK 81

Query: 254 YITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDN 313
                AV       +G         Q +S      M+ + V+  Q N    +  + M   
Sbjct: 82  -----AVAG-----QGAASLQ----QSVSV----AMTKN-VVRCQHNSTTDQLMEIMTGG 122

Query: 314 NIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNA 361
               +PV E    ++ G +SI D+    +          +  + ++  
Sbjct: 123 RFRHVPVEEN--GRLAGIISIGDVVKARIGEIEAEA-EHI--KAYIAG 165

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 77.7 bits (192), Expect = 2e-17
 Identities = 35/151 (23%), Positives = 73/151 (48%), Gaps = 27/151 (17%)

Query: 274 DIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVS 333
           D + +  + D     M+ + VIT + +E ++EAF++M    I  +PV++  + K++G V+
Sbjct: 3   DTLKNIKVKD----VMTKN-VITAKRHEGVVEAFEKMLKYKISSLPVIDD-ENKVIGIVT 56

Query: 334 IRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIH---- 389
             DI + L++ +        T+ D M      T D       IT   ++++   I     
Sbjct: 57  TTDIGYNLIRDKYTLE---TTIGDVM------TKD------VITIHEDASILEAIKKMDI 101

Query: 390 -SLASKSVHRIYVVAGEEAEVVGVITLRDVI 419
                + ++++ VV  +  ++VG+I+  D+I
Sbjct: 102 SGKKEEIINQLPVV-DKNNKLVGIISDGDII 131

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 47.2 bits (113), Expect = 7e-07
 Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 36/159 (22%)

Query: 198 EPFKSTTVRSIIKSYRWAPFLPVAT---DDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNY 254
           +  K+  V+ ++          V T    + ++     + KY++ ++P+I     D +N 
Sbjct: 3   DTLKNIKVKDVMTK-------NVITAKRHEGVVEAFEKMLKYKISSLPVI-----DDENK 50

Query: 255 ----ITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRM 310
               +T + +                    I D     M+ D VITI  +  ILEA K+M
Sbjct: 51  VIGIVTTTDIG------YNLIRDKYTLETTIGD----VMTKD-VITIHEDASILEAIKKM 99

Query: 311 -----KDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 344
                K+  I  +PVV+ +  K+VG +S  DI   + K 
Sbjct: 100 DISGKKEEIINQLPVVD-KNNKLVGIISDGDIIRTISKI 137

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 78.3 bits (193), Expect = 2e-17
 Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 19/135 (14%)

Query: 288 FM-SSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL 346
           FM  +D+V  +Q    +  A   +       IPV++    ++ G +    I + +   E 
Sbjct: 19  FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLD-PSYRLHGLIGTNMIMNSIFGLER 77

Query: 347 FS--NFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAG 404
                  Q+TV + M                    +   +      + +   +    V  
Sbjct: 78  IEFEKLDQITVEEVML------------TDIPRLHINDPIMKGFGMVIN---NGFVCVEN 122

Query: 405 EEAEVVGVITLRDVI 419
           +E    G+ T R V+
Sbjct: 123 DEQVFEGIFTRRVVL 137

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 53.6 bits (129), Expect = 8e-09
 Identities = 20/123 (16%), Positives = 52/123 (42%), Gaps = 20/123 (16%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIEP-----GTPDIKNYITQSAVVQGLEGCKGRDWFD 274
           V   +++   LL+L+K     +P+++P     G       I  + ++  + G +  ++ +
Sbjct: 29  VQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGL------IGTNMIMNSIFGLERIEF-E 81

Query: 275 IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSI 334
            +    + +     M +D +  +  N+ I++ F  + +N    + V   +Q    G  + 
Sbjct: 82  KLDQITVEE----VMLTD-IPRLHINDPIMKGFGMVINNGF--VCVENDEQ-VFEGIFTR 133

Query: 335 RDI 337
           R +
Sbjct: 134 RVV 136

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 11/97 (11%), Positives = 28/97 (28%), Gaps = 11/97 (11%)

Query: 347 FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE 406
                + TV  FM                   ++ + L   +  L       I V+    
Sbjct: 8   SDQLLEATVGQFM------IEAD----KVAHVQVGNNLEHALLVLTKTGYTAIPVLD-PS 56

Query: 407 AEVVGVITLRDVISCFIFEPPNHLDNYFGFSVKDLLN 443
             + G+I    +++          +     +V++++ 
Sbjct: 57  YRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVML 93

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 76.9 bits (190), Expect = 5e-17
 Identities = 17/144 (11%), Positives = 46/144 (31%), Gaps = 28/144 (19%)

Query: 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL- 346
            +S      ++ +  I E   R+ ++ +     V     K+VG + +  +  +       
Sbjct: 21  LISLK-PTVVEEDTPIEEIVDRILEDPVTRTVYVAR-DNKLVGMIPVMHLLKVSGFHFFG 78

Query: 347 -----------FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKS 395
                                + M               P+   +++ L   +  +   +
Sbjct: 79  FIPKEELIRSSMKRLIAKNASEIMLD-------------PVYVHMDTPLEEALKLMIDNN 125

Query: 396 VHRIYVVAGEEAEVVGVITLRDVI 419
           +  + VV  E+ E+VG +   +++
Sbjct: 126 IQEMPVV-DEKGEIVGDLNSLEIL 148

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 27/172 (15%), Positives = 58/172 (33%), Gaps = 26/172 (15%)

Query: 182 AADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNV 241
            +D++H   +         K   V  +I          V  D  +  ++  + +  +   
Sbjct: 2   GSDKIHHHHH-------HMKVKDVCKLISL----KPTVVEEDTPIEEIVDRILEDPVTRT 50

Query: 242 PII-EPGTP-------DIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDE 293
             +              +             +    R     + ++  S++    M    
Sbjct: 51  VYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKNASEI----MLD-- 104

Query: 294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE 345
            + +  +  + EA K M DNNI  +PVV+ +  +IVG+++  +I   L K  
Sbjct: 105 PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKG-EIVGDLNSLEILLALWKGR 155

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 75.2 bits (186), Expect = 1e-16
 Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 22/132 (16%)

Query: 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF 347
            +S    IT  SN  I+EA K +  +NI  +P+V+    K+VG ++  DI          
Sbjct: 6   ILSKP-PITAHSNISIMEAAKILIKHNINHLPIVDE-HGKLVGIITSWDIAK-------A 56

Query: 348 SNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEA 407
               + T+ + M      T +       IT   +  +  V   ++  ++  + VV  +  
Sbjct: 57  LAQNKKTIEEIM------TRN------VITAHEDEPVDHVAIKMSKYNISGVPVV-DDYR 103

Query: 408 EVVGVITLRDVI 419
            VVG++T  D+ 
Sbjct: 104 RVVGIVTSEDIS 115

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 72.7 bits (179), Expect = 1e-15
 Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 24/141 (17%)

Query: 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEG-QQKKIVGNVSIRDIR 338
             S+L    +     +++     I E    +  N +G   +      K+ V  VS RDI 
Sbjct: 6   RTSEL----LKRP-PVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDIL 60

Query: 339 HLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHR 398
             + +                N+             PIT      +      +   ++  
Sbjct: 61  RAVAQRLDLD----GPAMPIANS-------------PITVLDTDPVHVAAEKMRRHNIRH 103

Query: 399 IYVVAGEEAEVVGVITLRDVI 419
           + VV  +  E+VGV+++RD+ 
Sbjct: 104 V-VVVNKNGELVGVLSIRDLC 123

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 50.3 bits (121), Expect = 7e-08
 Identities = 28/155 (18%), Positives = 58/155 (37%), Gaps = 36/155 (23%)

Query: 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPD----IKNYITQ 257
           +     ++K     P + +    ++  V   L+K R+    +     P     +   +++
Sbjct: 4   AIRTSELLKR----PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAV---VSE 56

Query: 258 SAVVQGLEGCKGRDWFDIIA-----SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKD 312
                       RD    +A       P   +     +S   IT+   + +  A ++M+ 
Sbjct: 57  ------------RDILRAVAQRLDLDGPAMPI----ANS--PITVLDTDPVHVAAEKMRR 98

Query: 313 NNIGGIPVVEGQQKKIVGNVSIRDI-RHLLLKPEL 346
           +NI  + VV     ++VG +SIRD+     +  EL
Sbjct: 99  HNIRHVVVVNKN-GELVGVLSIRDLCFERAILLEL 132

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 71.7 bits (176), Expect = 7e-15
 Identities = 26/161 (16%), Positives = 56/161 (34%), Gaps = 39/161 (24%)

Query: 288 FMSSD-EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP-- 344
           FM+    +  ++ +  + +A + + +  + G+PV++     +VG VS  D+  L      
Sbjct: 9   FMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDD-NWTLVGVVSDYDLLALDSISGR 67

Query: 345 ----------------------ELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLES 382
                                 +L S      V D M               P+  +  +
Sbjct: 68  SQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTP------------SPLVVRDST 115

Query: 383 TLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI 423
            L      L      R+ VV   + +++G++T  +V+   +
Sbjct: 116 NLEDAARLLLETKFRRLPVV-DADGKLIGILTRGNVVRAAL 155

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 54.0 bits (130), Expect = 7e-09
 Identities = 18/146 (12%), Positives = 50/146 (34%), Gaps = 26/146 (17%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIE--------------------PGTPDIKNYITQSA 259
           V    S+   L LL + ++  +P+I+                     G       +    
Sbjct: 19  VKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDV 78

Query: 260 VVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIP 319
                   + +        + + DL    M+    + ++ +  + +A + + +     +P
Sbjct: 79  DSTWKTFNELQKLISKTYGKVVGDL----MTPS-PLVVRDSTNLEDAARLLLETKFRRLP 133

Query: 320 VVEGQQKKIVGNVSIRDIRHLLLKPE 345
           VV+    K++G ++  ++    L+ +
Sbjct: 134 VVDADG-KLIGILTRGNVVRAALQIK 158

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 72.5 bits (178), Expect = 7e-15
 Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 24/139 (17%)

Query: 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF 347
           +++ D    ++ +  + E   RM+        V +  +    G V+  D+  L L     
Sbjct: 18  WVTQD-FPMVEESATVRECLHRMRQYQTNECIVKDR-EGHFRGVVNKEDLLDLDLD---- 71

Query: 348 SNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEA 407
                 +V + ++             P      E  +   +          + VV  EE 
Sbjct: 72  -----SSVFNKVSL------------PDFFVHEEDNITHALLLFLEHQEPYLPVV-DEEM 113

Query: 408 EVVGVITLRDVISCFIFEP 426
            + G ++L D +   I   
Sbjct: 114 RLKGAVSLHDFLEALIEAL 132

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 52.0 bits (125), Expect = 5e-08
 Identities = 18/129 (13%), Positives = 44/129 (34%), Gaps = 19/129 (14%)

Query: 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDI 275
            F  V    ++   L  + +Y+     + +           +    +G+      D  D+
Sbjct: 22  DFPMVEESATVRECLHRMRQYQTNECIVKD-----------REGHFRGV--VNKEDLLDL 68

Query: 276 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 335
                + +     +S      +   + I  A     ++    +PVV  ++ ++ G VS+ 
Sbjct: 69  DLDSSVFNK----VSL-PDFFVHEEDNITHALLLFLEHQEPYLPVV-DEEMRLKGAVSLH 122

Query: 336 DIRHLLLKP 344
           D    L++ 
Sbjct: 123 DFLEALIEA 131

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 8/78 (10%), Positives = 24/78 (30%), Gaps = 13/78 (16%)

Query: 343 KPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVV 402
             ++  +   + V+ ++                   +  +T+   +H +     +   V 
Sbjct: 3   SDKIHHHHHHMKVKKWVT------------QDFPMVEESATVRECLHRMRQYQTNECIVK 50

Query: 403 AGEEAEVVGVITLRDVIS 420
              E    GV+   D++ 
Sbjct: 51  D-REGHFRGVVNKEDLLD 67

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 70.4 bits (172), Expect = 1e-14
 Identities = 25/134 (18%), Positives = 55/134 (41%), Gaps = 11/134 (8%)

Query: 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVE-GQQKKIVGNVSIRDI-RHLLLKPE 345
           FM+   + T+  +  + E  K +   ++   P+VE  + + +VG V    + + L  +P 
Sbjct: 18  FMNHS-ITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPP 76

Query: 346 LFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGE 405
             +   Q  ++D +    PT P        +T   E+TL    +     ++  ++V    
Sbjct: 77  SRAPGHQQCLQDILARGCPTEP------VTLTLFSETTLHQAQNLFKLLNLQSLFVT--S 128

Query: 406 EAEVVGVITLRDVI 419
               VG ++  ++ 
Sbjct: 129 RGRAVGCVSWVEMK 142

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 19/120 (15%), Positives = 47/120 (39%), Gaps = 4/120 (3%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIEPG-TPDIKNYITQSAVVQGLEGCKGRDWFDIIAS 278
           +A D  +  V+ +++   +   P++E   +  +   + ++ +VQ L+  +          
Sbjct: 26  LAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQ-AEPPSRAPGHQQ 84

Query: 279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR 338
                L     +    +T+ S   + +A    K  N+  + V      + VG VS  +++
Sbjct: 85  CLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSR--GRAVGCVSWVEMK 142

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 62.4 bits (152), Expect = 3e-12
 Identities = 17/132 (12%), Positives = 48/132 (36%), Gaps = 19/132 (14%)

Query: 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF 347
           +++  +           +A +R+  +     PV++G  ++ +G V +      LL+    
Sbjct: 9   YLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG--ERYLGMVHLSR----LLEGRKG 62

Query: 348 SNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEA 407
               +  + + +   V +        P         L   + S+A+     + +   E+ 
Sbjct: 63  WPTVKEKLGEELLETVRS------YRP------GEQLFDNLISVAAAKCSVVPLA-DEDG 109

Query: 408 EVVGVITLRDVI 419
              GV++ + ++
Sbjct: 110 RYEGVVSRKRIL 121

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 47.0 bits (112), Expect = 8e-07
 Identities = 20/132 (15%), Positives = 44/132 (33%), Gaps = 16/132 (12%)

Query: 207 SIIKSYRWAPFLPVAT-DDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265
           S+  SY      PV T   S       L+       P+++         +  S +++G +
Sbjct: 4   SVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDGERY--LGMVHLSRLLEGRK 61

Query: 266 GCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ 325
           G            + + +  L       V + +  E + +    +       +P+ + + 
Sbjct: 62  GWPT-------VKEKLGEELLE-----TVRSYRPGEQLFDNLISVAAAKCSVVPLAD-ED 108

Query: 326 KKIVGNVSIRDI 337
            +  G VS + I
Sbjct: 109 GRYEGVVSRKRI 120

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 63.7 bits (155), Expect = 2e-11
 Identities = 29/197 (14%), Positives = 71/197 (36%), Gaps = 34/197 (17%)

Query: 223 DDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS 282
             +    L L  KY++R+ P++      +   I+             +        + ++
Sbjct: 17  PATRNYALELFKKYKVRSFPVVN-KEGKLVGIISV------------KRILVNPDEEQLA 63

Query: 283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342
            L    +  D V  ++ N+ + +A K M + +   + VV+  + K VG +++ DI     
Sbjct: 64  ML----VKRD-VPVVKENDTLKKAAKLMLEYDYRRVVVVDS-KGKPVGILTVGDIIRRYF 117

Query: 343 KPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVV 402
                  ++ + +  +    V    +               L + + +L   +   +  V
Sbjct: 118 AKS--EKYKGVEIEPYYQRYVSIVWEGT------------PLKAALKALLLSNSMAL-PV 162

Query: 403 AGEEAEVVGVITLRDVI 419
              E  +VG++   D++
Sbjct: 163 VDSEGNLVGIVDETDLL 179

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 61.7 bits (150), Expect = 7e-11
 Identities = 25/143 (17%), Positives = 49/143 (34%), Gaps = 24/143 (16%)

Query: 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS 348
           M+ +  +TI        A +  K   +   PVV   + K+VG +S++ I           
Sbjct: 7   MTQN-PVTITLPATRNYALELFKKYKVRSFPVVNK-EGKLVGIISVKRIL---------V 55

Query: 349 NFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAE 408
           N  +  +   +                   K   TL      +      R+ VV   + +
Sbjct: 56  NPDEEQLAMLVK------------RDVPVVKENDTLKKAAKLMLEYDYRRVVVV-DSKGK 102

Query: 409 VVGVITLRDVISCFIFEPPNHLD 431
            VG++T+ D+I  +  +   +  
Sbjct: 103 PVGILTVGDIIRRYFAKSEKYKG 125

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 19/128 (14%), Positives = 55/128 (42%), Gaps = 6/128 (4%)

Query: 218 LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIA 277
           LPV   +  L  ++  +     +  +    + ++     +  +++         +   + 
Sbjct: 160 LPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLP 219

Query: 278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
           ++P++++    M+ D VI    +  + E   +M   +I  +PV+ G+   ++G +   D+
Sbjct: 220 NKPVAEI----MTRD-VIVATPHMTVHEVALKMAKYSIEQLPVIRGEG-DLIGLIRDFDL 273

Query: 338 RHLLLKPE 345
             +L+K +
Sbjct: 274 LKVLVKSK 281

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 1e-09
 Identities = 47/311 (15%), Positives = 109/311 (35%), Gaps = 75/311 (24%)

Query: 177 KDAPTAADRLHEDFYKVIL-QEEPFKSTTVRSIIKSYRW----------APFLP----VA 221
           KDA +   RL   F+ ++  QEE  +      +  +Y++           P +     + 
Sbjct: 58  KDAVSGTLRL---FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 222 TDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQ-----SAVVQGLEGCKGRDWFDII 276
             D + +   + +KY   NV  ++P    ++  + +     + ++ G+ G  G+ W   +
Sbjct: 115 QRDRLYNDNQVFAKY---NVSRLQPYL-KLRQALLELRPAKNVLIDGVLGS-GKTW---V 166

Query: 277 ASQPISDLGLPFMSSDEV--ITI---QSNELILEAFKRM----------KDNNIGGIPV- 320
           A        +      ++  + +    S E +LE  +++          + ++   I + 
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 321 VEGQQKKIVGNVSIRDIRHLLL------KPELFSNF----------RQLTVRDFMNAVVP 364
           +   Q ++   +  +   + LL        + ++ F          R   V DF++A   
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 365 TTPDSGKVNPPIT-CKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLR-DVISCF 422
           T       +  +T  +++S L   +                   EV+     R  +I+  
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR----------EVLTTNPRRLSIIAES 336

Query: 423 IFEPPNHLDNY 433
           I +     DN+
Sbjct: 337 IRDGLATWDNW 347

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 6e-09
 Identities = 51/361 (14%), Positives = 96/361 (26%), Gaps = 116/361 (32%)

Query: 146 GMTGPAAVAGLTVAAAGAAVAGGLAAEKGAG--------KDAPTAADRLHEDFYKVI--- 194
           G+ G    +G T  A    ++  +  +             ++P     + +     I   
Sbjct: 157 GVLG----SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 195 LQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYR-----LRNV-------- 241
                  S+ ++  I S +           + L  LL    Y      L NV        
Sbjct: 213 WTSRSDHSSNIKLRIHSIQ-----------AELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 242 --------------PIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDL--- 284
                          + +  +     +I+       L   + +            DL   
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321

Query: 285 ---GLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL 341
                P   S          +I E+ +            V   +   +   S+       
Sbjct: 322 VLTTNPRRLS----------IIAESIRDGL-ATWDNWKHVNCDKLTTIIESSLNV----- 365

Query: 342 LKPELF-SNFRQLTVRDFMNAVVPTTPDSGKVNPPIT-CKL-----ESTLGSVIHSLASK 394
           L+P  +   F +L+V  F        P S  + P I    +     +S +  V++ L   
Sbjct: 366 LEPAEYRKMFDRLSV--F--------PPSAHI-PTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 395 S------------VHRIYVVAGEEAEVVGVITL-RDVISCFIF--------EPPNHLDNY 433
           S            +  IY+    + E      L R ++  +            P +LD Y
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLE--NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472

Query: 434 F 434
           F
Sbjct: 473 F 473

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 23/147 (15%), Positives = 48/147 (32%), Gaps = 17/147 (11%)

Query: 288 FMSSDE-----VITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLL 341
            M          +  Q +  + +    + +    G PVV  ++ +++VG V  RD+   +
Sbjct: 16  VMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISI 75

Query: 342 LKPELFSNFRQLTVRDFMNAVVPTTPDSGKVN---------PPITCKLESTLGSVIHSLA 392
                  +    T   +     P  P                P T    + +  V+    
Sbjct: 76  ENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFR 135

Query: 393 SKSVHRIYVVAGEEAEVVGVITLRDVI 419
              + +  V       ++G+IT +DV+
Sbjct: 136 KLGLRQCLVT--HNGRLLGIITKKDVL 160

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 48.7 bits (116), Expect = 5e-07
 Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 25/164 (15%)

Query: 197 EEPFKSTTVRSIIKSYRWAPFLPVATDDSML--SVLLLLSKYRLRNVPIIE-PGTPDIKN 253
           EE    T    ++K  R  P L V T DSM    V  ++S+      P++    +  +  
Sbjct: 5   EEFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVG 64

Query: 254 YITQSAVVQGLEGCKGRDWFDIIASQPISDLGL----------------PFMSSDEVITI 297
           ++ +  ++  +E    R   D + S  I                       +      T+
Sbjct: 65  FVLRRDLIISIE--NARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLS-PFTV 121

Query: 298 QSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI-RHL 340
                +       +   +    V      +++G ++ +D+ +H+
Sbjct: 122 TDLTPMEIVVDIFRKLGLRQCLVTHN--GRLLGIITKKDVLKHI 163

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 29/157 (18%)

Query: 268 KGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKK 327
           +   W+    S  I++L LP       + ++S+  + EA   MK + +  +PVV+     
Sbjct: 376 EHGHWWW---SLAIAELELP----APPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGS 428

Query: 328 IVGNVSIRDI-RHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGS 386
           ++G V    +   ++      S+         +N  V                    LG 
Sbjct: 429 VLGVVGQETLITQIVSMNRQQSD----PAIKALNKRVIRLN------------ESEILGK 472

Query: 387 VIHSLASKSVHRIYVVAGEEA---EVVGVITLRDVIS 420
           +   L       + ++    A   E+  + T  DV +
Sbjct: 473 LARVLEVDPS--VLILGKNPAGKVELKALATKLDVTT 507

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 51.4 bits (124), Expect = 4e-07
 Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 21/124 (16%)

Query: 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQ-QKKIVGNVSIRDIRHLLLKPELFSNFRQL 353
             +     + +A   M    I G+PVV    ++K+VG ++ RD+R        F     +
Sbjct: 124 FFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMR--------FIQDYSI 175

Query: 354 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVI 413
            + D M      T +       IT  + +TL      L    + ++ +V      + G+I
Sbjct: 176 KISDVM------TKE-----QLITAPVGTTLSEAEKILQKYKIEKLPLV-DNNGVLQGLI 223

Query: 414 TLRD 417
           T++D
Sbjct: 224 TIKD 227

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 50.6 bits (122), Expect = 7e-07
 Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 20/123 (16%)

Query: 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLT 354
           IT+  +  + EA   M +  IGG+PVV+  + ++VG ++ RD+R        F       
Sbjct: 106 ITVTPDMTVKEAIDLMAEYKIGGLPVVDE-EGRLVGLLTNRDVR--------FEKNLSKK 156

Query: 355 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVIT 414
           ++D M      TP        I    + +L      L    + ++ +V  ++ ++VG+IT
Sbjct: 157 IKDLM------TPR----EKLIVAPPDISLEKAKEILHQHRIEKLPLV-SKDNKLVGLIT 205

Query: 415 LRD 417
           ++D
Sbjct: 206 IKD 208

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 50.2 bits (121), Expect = 7e-07
 Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 21/124 (16%)

Query: 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFSNFRQL 353
             +     + EA + M+   I G+P+VE    +K+VG ++ RD+R        F +    
Sbjct: 101 FFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMR--------FISDYNA 152

Query: 354 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVI 413
            + + M      T +       +T  + + L +    L    + ++ +V      + G+I
Sbjct: 153 PISEHM------TSE-----HLVTAAVGTDLETAERILHEHRIEKLPLV-DNSGRLSGLI 200

Query: 414 TLRD 417
           T++D
Sbjct: 201 TIKD 204

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 49.8 bits (120), Expect = 1e-06
 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 25/124 (20%)

Query: 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLT 354
           ITI  +E +  A   M+ + I G+PVVE   +K+VG ++ +DI     K           
Sbjct: 104 ITIAPDETVDFALFLMEKHGIDGLPVVED--EKVVGIITKKDIAAREGKL---------- 151

Query: 355 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVIT 414
           V++ M      T         IT      +   +  +    + R+ VV  E  ++VG+IT
Sbjct: 152 VKELM------TK------EVITVPESIEVEEALKIMIENRIDRLPVV-DERGKLVGLIT 198

Query: 415 LRDV 418
           + D+
Sbjct: 199 MSDL 202

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 49.0 bits (118), Expect = 2e-06
 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 20/123 (16%)

Query: 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLT 354
           +T++  + I +  +    +   G PVV  +  ++VG ++ RD+R        F      +
Sbjct: 100 VTVRPEQTIADVMELTHYHGFAGFPVVT-ENNELVGIITGRDVR--------FVTDLTKS 150

Query: 355 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVIT 414
           V   M      TP         T K  +T   V   +    V +I VV  +E ++ G+IT
Sbjct: 151 VAAVM------TPK----ERLATVKEGATGAEVQEKMHKARVEKILVV-NDEFQLKGMIT 199

Query: 415 LRD 417
            +D
Sbjct: 200 AKD 202

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 16/126 (12%), Positives = 43/126 (34%), Gaps = 22/126 (17%)

Query: 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQK--KIVGNVSIRDIRHLLLKPELFSNFR- 351
             ++ ++   +     +      + V +       ++G V+ RD              + 
Sbjct: 108 SNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYP--------IDLTQT 159

Query: 352 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVG 411
           +  V D M      TP S  V    T   ++ L      +  K ++ + ++  ++  +  
Sbjct: 160 ETKVSDMM------TPFSKLV----TAHQDTKLSEANKIIWEKKLNALPII-DDDQHLRY 208

Query: 412 VITLRD 417
           ++  +D
Sbjct: 209 IVFRKD 214

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 23/127 (18%)

Query: 295 ITIQSNELILEAFKRMKDNNIGGIPVVE--GQQKKIVGNVSIRDIRHLLLKPELFSNFRQ 352
           + +  +  + +  +    +   GIP+ E      K+VG V+ RDI         F   + 
Sbjct: 119 VVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDID--------FLAEKD 170

Query: 353 LT--VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVV 410
            T  + + M      TP        +      TL      L      ++ +V  +  E+V
Sbjct: 171 HTTLLSEVM------TPR----IELVVAPAGVTLKEANEILQRSKKGKLPIV-NDCDELV 219

Query: 411 GVITLRD 417
            +I   D
Sbjct: 220 AIIARTD 226

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 291 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNF 350
            D++  +     +  A+  M+D N+  IPV +G    ++G +S  +I    +     +  
Sbjct: 14  MDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNN-HLLGMLSTSNITATYMDIWDSNIL 72

Query: 351 RQLTVRDFM 359
            +       
Sbjct: 73  AKSATSLDN 81

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 39.0 bits (92), Expect = 6e-04
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
           I I+   L ++A   M+  +I  + V +G    ++G V + D+
Sbjct: 106 IRIRPGTLAVDALNLMQSRHITCVLVADG--DHLLGVVHMHDL 146

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	444
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	100.0
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	100.0
3ddj_A	296	CBS domain-containing protein; structural genomics	100.0
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	100.0
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	100.0
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.97
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.92
3ddj_A	296	CBS domain-containing protein; structural genomics	99.91
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.9
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.87
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.87
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.86
4esy_A	170	CBS domain containing membrane protein; structural	99.82
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.8
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.78
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.77
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.77
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.77
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.76
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.76
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.75
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.74
4esy_A	170	CBS domain containing membrane protein; structural	99.74
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.74
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.74
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.74
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.73
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.73
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.72
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.72
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.72
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.72
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.72
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.71
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.71
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.71
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.71
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.7
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.7
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.7
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.7
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.7
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.7
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.69
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.69
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.69
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.69
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.69
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.69
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.68
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.68
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.68
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.68
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.68
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.68
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.67
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.67
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.67
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.67
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.67
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.67
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.67
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.66
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.66
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.66
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.66
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.66
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.65
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.65
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.65
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.64
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.64
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.63
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.63
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.63
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.63
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.63
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.62
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.62
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.62
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.61
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.61
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.61
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.61
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.61
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.61
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.6
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.6
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.6
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.6
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.6
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.59
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.59
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.58
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.58
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.58
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.57
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.53
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.5
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.49
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.48
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.47
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.46
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.43
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.36
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.35
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.34
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.33
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.32
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.31
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.31
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.24
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.24
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.23
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.2
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.18
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.16
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.13
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.07
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.06
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.03
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.01
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.01
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.94
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.9
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.9
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.65
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.6

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=100.00  E-value=2.1e-34  Score=281.85  Aligned_cols=294  Identities=15%  Similarity=0.268  Sum_probs=230.7

Q ss_pred             HHHHHHhhcCCccCCCCCCCCCeEEEeCCCCHHHHHHHHHHCCCccCceecCCCCCCCCcccceeEEEehhHHHHHHHhh
Q 013373           35 ETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLET  114 (444)
Q Consensus        35 ~~~~~~~~~~~v~~~~~~~~~~~i~v~~~~si~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~~Giv~~~di~~~~l~~  114 (444)
                      +.+..|+....|++++. ++.++++++.++|+.+|+++|.+++++++||||++.       ++++|++|..|++..++..
T Consensus        21 ~~i~~~l~~~~~~d~m~-~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~-------~~lvGilt~~Dl~~~l~~~   92 (323)
T 3t4n_C           21 ESIRKFLNSKTSYDVLP-VSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKT-------SRFAGLLTTTDFINVIQYY   92 (323)
T ss_dssp             HHHHHHHHHSBHHHHSC-SEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTT-------TEEEEEECHHHHHHHHHHH
T ss_pred             HHHHHHHHhCchHhhCC-CCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCC-------CeEEEEEEHHHHHHHHHHH
Confidence            34667778899998886 578999999999999999999999999999999875       6999999999999987543


Q ss_pred             hhHHhhhcccccccccccccccccccchhcccCCCcchhhhhhHHhhhhhhccchhhhccCCCCCccccccccchhHHhh
Q 013373          115 AELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVI  194 (444)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l  194 (444)
                      ......                                                                   .+.   +
T Consensus        93 ~~~~~~-------------------------------------------------------------------~~~---l  102 (323)
T 3t4n_C           93 FSNPDK-------------------------------------------------------------------FEL---V  102 (323)
T ss_dssp             HHCGGG-------------------------------------------------------------------GGG---G
T ss_pred             HcCcch-------------------------------------------------------------------hHH---H
Confidence            321000                                                                   000   0


Q ss_pred             hccCCCCCCcHHHhhhh--cCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCc-----EEEEEeHHHHHHHhhcC
Q 013373          195 LQEEPFKSTTVRSIIKS--YRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPD-----IKNYITQSAVVQGLEGC  267 (444)
Q Consensus       195 ~~~~~~~~~~v~di~~~--~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~-----l~Givt~~di~~~l~~~  267 (444)
                         +.+....+.+++..  ....+++++.+++++.+|++.|.+++++++||+|++ +.     ++|++|.+|+++++...
T Consensus       103 ---~~~~~~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~~~~~l~Givt~~di~~~l~~~  178 (323)
T 3t4n_C          103 ---DKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQD-EETHREIVVSVLTQYRILKFVALN  178 (323)
T ss_dssp             ---GGCBHHHHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEEC-TTTCCEEEEEEEEHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecC-CCCCccceEEEecHHHHHHHHHhc
Confidence               00111223344321  112668999999999999999999999999999976 54     99999999999988654


Q ss_pred             CCCCcccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccc
Q 013373          268 KGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF  347 (444)
Q Consensus       268 ~~~~~~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~  347 (444)
                      ...   ..+...++.++++ .|.. +++++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|+++++.... +
T Consensus       179 ~~~---~~~~~~~v~~~~~-~m~~-~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~-~~~~~Giit~~dl~~~~~~~~-~  251 (323)
T 3t4n_C          179 CRE---THFLKIPIGDLNI-ITQD-NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE-NGYLINVYEAYDVLGLIKGGI-Y  251 (323)
T ss_dssp             CGG---GGGCCSBGGGTTC-SBCT-TCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEETTHHHHHHHTTH-H
T ss_pred             CCc---hhhhhCcHHHcCC-CCCC-CcEEECCCCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEeHHHHHHHHhhch-h
Confidence            211   2345678888432 2765 8999999999999999999999999999998 899999999999999876421 1


Q ss_pred             cccccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013373          348 SNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  425 (444)
Q Consensus       348 ~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e  425 (444)
                       .....++.++|+....      ...++++|++++++.++++.|.+++++++||+|++| +++|+||.+||+++++.+
T Consensus       252 -~~~~~~v~~~m~~~~~------~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~-~l~Giit~~Dil~~l~~~  321 (323)
T 3t4n_C          252 -NDLSLSVGEALMRRSD------DFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVG-RLVGVLTLSDILKYILLG  321 (323)
T ss_dssp             -HHTTSBHHHHGGGSCT------TCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTS-BEEEEEEHHHHHHHHHHC
T ss_pred             -hhccCCHHHHHhhccc------cCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCC-cEEEEEEHHHHHHHHHhc
Confidence             1235689999985211      112689999999999999999999999999999887 999999999999999864

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=100.00  E-value=5e-34  Score=272.90  Aligned_cols=262  Identities=19%  Similarity=0.334  Sum_probs=216.2

Q ss_pred             CCCCeEEEeCCCCHHHHHHHHHHCCCccCceecCCCCCCCCcccceeEEEehhHHHHHHHhhhhHHhhhccccccccccc
Q 013373           53 PGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGV  132 (444)
Q Consensus        53 ~~~~~i~v~~~~si~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~~Giv~~~di~~~~l~~~~~~~~~~~~~~~~~~~~  132 (444)
                      ++++++++++++|+.+|+++|.+++++++||+|++.       ++++|++|..||+.++........             
T Consensus        10 ~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~-------~~~~Givt~~di~~~~~~~~~~~~-------------   69 (280)
T 3kh5_A           10 QNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGN-------NKVVGIITSMDIVDFMGGGSKYNL-------------   69 (280)
T ss_dssp             CCSCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTT-------CBEEEEEEHHHHHHHTTTSGGGHH-------------
T ss_pred             cCCCcEEECCCCcHHHHHHHHHhCCCcEeeEEECCC-------CeEEEEEEHHHHHHHhcccchhhh-------------
Confidence            456899999999999999999999999999999744       699999999999987522211000             


Q ss_pred             ccccccccchhcccCCCcchhhhhhHHhhhhhhccchhhhccCCCCCccccccccchhHHhhhccCCCCCCcHHHhhhhc
Q 013373          133 GTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSY  212 (444)
Q Consensus       133 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~di~~~~  212 (444)
                                                                       .......+++..+       ..+++++|.  
T Consensus        70 -------------------------------------------------~~~~~~~~~~~~~-------~~~v~~im~--   91 (280)
T 3kh5_A           70 -------------------------------------------------IREKHERNFLAAI-------NEPVREIME--   91 (280)
T ss_dssp             -------------------------------------------------HHTTSTTCHHHHT-------TSBGGGTSB--
T ss_pred             -------------------------------------------------hhhccccchhHHh-------hhhHHHhcC--
Confidence                                                             0000011222222       457899998  


Q ss_pred             CCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCC
Q 013373          213 RWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD  292 (444)
Q Consensus       213 ~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~  292 (444)
                        ++++++.+++++.+|++.|.+++++++||+|++ ++++|++|..|+++.+.....       ...++.+    +|.+ 
T Consensus        92 --~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~-------~~~~v~~----~m~~-  156 (280)
T 3kh5_A           92 --ENVITLKENADIDEAIETFLTKNVGGAPIVNDE-NQLISLITERDVIRALLDKID-------ENEVIDD----YITR-  156 (280)
T ss_dssp             --CSCCCEETTCBHHHHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHGGGSC-------TTCBSGG----GCBC-
T ss_pred             --CCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCC-CEEEEEEEHHHHHHHHhhcCC-------CCCCHHH----HhCC-
Confidence              679999999999999999999999999999987 899999999999998765421       2347888    7875 


Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccc--------cccccCcHHHHhcccCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF--------SNFRQLTVRDFMNAVVP  364 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~--------~~~~~~~v~~~m~~~~~  364 (444)
                      ++.++.+++++.++++.|.+++++++||++  +|+++|++|.+|+++.+.....+        ......++.++|..   
T Consensus       157 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~---  231 (280)
T 3kh5_A          157 DVIVATPGERLKDVARTMVRNGFRRLPVVS--EGRLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNVRMEEIMKR---  231 (280)
T ss_dssp             SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHTSHHHHHHHHSCCTHHHHHCBHHHHSBS---
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHhhhhhhhhhcccchhhhhCCcHHHHhcC---
Confidence            899999999999999999999999999995  79999999999999987542211        11245689999984   


Q ss_pred             CCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013373          365 TTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF  422 (444)
Q Consensus       365 ~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l  422 (444)
                               +++++++++++.+|++.|.+++++++||+|++| +++|+||++||++++
T Consensus       232 ---------~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g-~~~Givt~~dil~~l  279 (280)
T 3kh5_A          232 ---------DVITAKEGDKLKKIAEIMVTNDIGALPVVDENL-RIKGIITEKDVLKYF  279 (280)
T ss_dssp             ---------SCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTC-BEEEEEEHHHHGGGG
T ss_pred             ---------CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-eEEEEEeHHHHHHhh
Confidence                     889999999999999999999999999999987 999999999999876

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=100.00  E-value=5.3e-33  Score=268.53  Aligned_cols=264  Identities=16%  Similarity=0.234  Sum_probs=221.8

Q ss_pred             hhcCCccCCCCCCCCCeEEEeCCCCHHHHHHHHHHCCCccCceecCCCCCCCCcccceeEEEehhHHHHHHHhhhhHHhh
Q 013373           41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA  120 (444)
Q Consensus        41 ~~~~~v~~~~~~~~~~~i~v~~~~si~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~~Giv~~~di~~~~l~~~~~~~~  120 (444)
                      +.+.+|++++   +++++++++++|+.+|++.|.+++++++||+|  +        +++|++|..||+.++......   
T Consensus        17 ~~~~~V~dim---~~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d--~--------~l~GivT~~Di~~~~~~~~~~---   80 (296)
T 3ddj_A           17 FQGMNIETLM---IKNPPILSKEDRLGSAFKKINEGGIGRIIVAN--E--------KIEGLLTTRDLLSTVESYCKD---   80 (296)
T ss_dssp             TCCSSGGGTC---EESCCEECTTSBHHHHHHHTTGGGCCEEEEES--S--------SEEEEEEHHHHHGGGTTCC-----
T ss_pred             hcccCHHHhc---cCCCcEECCCccHHHHHHHHHHCCCceEEEEC--C--------eEEEEEeHHHHHHHhcccccc---
Confidence            3467787777   45899999999999999999999999999999  3        999999999999875221100   


Q ss_pred             hcccccccccccccccccccchhcccCCCcchhhhhhHHhhhhhhccchhhhccCCCCCccccccccchhHHhhhccCCC
Q 013373          121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF  200 (444)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  200 (444)
                                                                                     .....+++..       
T Consensus        81 ---------------------------------------------------------------~~~~~~~~~~-------   90 (296)
T 3ddj_A           81 ---------------------------------------------------------------SCSQGDLYHI-------   90 (296)
T ss_dssp             ----------------------------------------------------------------CCHHHHHHH-------
T ss_pred             ---------------------------------------------------------------cccchhhHHH-------
Confidence                                                                           0011222222       


Q ss_pred             CCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCc
Q 013373          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP  280 (444)
Q Consensus       201 ~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~  280 (444)
                      ...+++++|.    .+++++.+++++.+|++.|.+++++++||+|++ ++++|++|..|+++.+....        ...+
T Consensus        91 ~~~~v~~im~----~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-~~lvGivt~~dl~~~~~~~~--------~~~~  157 (296)
T 3ddj_A           91 STTPIIDYMT----PNPVTVYNTSDEFTAINIMVTRNFGSLPVVDIN-DKPVGIVTEREFLLLYKDLD--------EIFP  157 (296)
T ss_dssp             HTSBGGGTSE----ESCCCEETTSCHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHGGGGGGSC--------CCCB
T ss_pred             hcccHHHhcc----CCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHhhhccc--------cccc
Confidence            1456899998    568999999999999999999999999999977 89999999999998775432        3458


Q ss_pred             ccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc-----ccccCcH
Q 013373          281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS-----NFRQLTV  355 (444)
Q Consensus       281 v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~-----~~~~~~v  355 (444)
                      +.+    +|.+ ++.++.+++++.++++.|.+++++++||+|+ +|+++|++|.+|+++.+..  .+.     .....++
T Consensus       158 v~~----~m~~-~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~--~~~~~~~~~~~~~~v  229 (296)
T 3ddj_A          158 VKV----FMST-KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD-DNKVVGIVTVVNAIKQLAK--AVDKLDPDYFYGKVV  229 (296)
T ss_dssp             HHH----HSBC-SCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHH--HHHHTCTHHHHTCBH
T ss_pred             HHH----hhcC-CCeEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHHHHHH--HHhhcChhhhcCcCH
Confidence            888    7875 8999999999999999999999999999998 8999999999999988752  111     1235689


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      .++|..            ++++|++++++.++++.|.+++++++||+|++| +++|+||++||++++..
T Consensus       230 ~~~m~~------------~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g-~~~Giit~~Dil~~l~~  285 (296)
T 3ddj_A          230 KDVMVT------------NLVTIDELASVNRAAAEMIVKRIGSLLILNKDN-TIRGIITERDLLIALHH  285 (296)
T ss_dssp             HHHSBC------------CCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHHH
T ss_pred             HHHhCC------------CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCC-eEEEEEcHHHHHHHHHH
Confidence            999985            889999999999999999999999999999887 99999999999999986

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=100.00  E-value=9.5e-32  Score=264.25  Aligned_cols=296  Identities=18%  Similarity=0.301  Sum_probs=228.4

Q ss_pred             HHHHHHhhcCCccCCCCCCCCCeEEEeCCCCHHHHHHHHHHCCCccCceecCCCCCCCCcccceeEEEehhHHHHHHHhh
Q 013373           35 ETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLET  114 (444)
Q Consensus        35 ~~~~~~~~~~~v~~~~~~~~~~~i~v~~~~si~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~~Giv~~~di~~~~l~~  114 (444)
                      +.+..|++..+|++++. +..+++++++++|+.+|++.|.+++++++||+|.+.       ++++|+|+..|++.++...
T Consensus        13 ~~~~~~l~~~~v~dim~-~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~-------~~~vGiv~~~Dl~~~~~~~   84 (334)
T 2qrd_G           13 KEIQAFIRSRTSYDVLP-TSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEA-------NKFAGLLTMADFVNVIKYY   84 (334)
T ss_dssp             HHHHHHHHHSBGGGGSC-SEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTT-------TEEEEEECHHHHHHHHHHH
T ss_pred             HHHHHHHhcCchhhhCC-CCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCC-------CeEEEEEEHHHHHHHHHHH
Confidence            45677888899999986 466799999999999999999999999999999864       5999999999999876543


Q ss_pred             hhHHhhhcccccccccccccccccccchhcccCCCcchhhhhhHHhhhhhhccchhhhccCCCCCccccccccchhHHhh
Q 013373          115 AELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVI  194 (444)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l  194 (444)
                      .....                             .+                                      +.+..+
T Consensus        85 ~~~~~-----------------------------~~--------------------------------------~~~~~~   97 (334)
T 2qrd_G           85 YQSSS-----------------------------FP--------------------------------------EAIAEI   97 (334)
T ss_dssp             HHHCS-----------------------------CG--------------------------------------GGGGGG
T ss_pred             hhccC-----------------------------Cc--------------------------------------cHHHHH
Confidence            21000                             00                                      000000


Q ss_pred             hccCCCCCCcH----HHhhhhcCCCCc--eEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCc----EEEEEeHHHHHHHh
Q 013373          195 LQEEPFKSTTV----RSIIKSYRWAPF--LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPD----IKNYITQSAVVQGL  264 (444)
Q Consensus       195 ~~~~~~~~~~v----~di~~~~~~~~~--v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~----l~Givt~~di~~~l  264 (444)
                         .......+    +++|.    .++  +++.+++++.+|++.|.+++++++||+|++.++    ++|++|..|+++++
T Consensus        98 ---~~~~~~~i~~~l~~im~----~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~  170 (334)
T 2qrd_G           98 ---DKFRLLGLREVERKIGA----IPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFI  170 (334)
T ss_dssp             ---GSCBHHHHHHHHHHHTC----SCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHH
T ss_pred             ---hhhchhhHHHHHHhhcc----CCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHH
Confidence               00000012    23443    445  899999999999999999999999999975234    99999999999988


Q ss_pred             hcCCCCCcccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCC
Q 013373          265 EGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (444)
Q Consensus       265 ~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~  344 (444)
                      .....  .. .....+++++.. +|.. ++.++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|+++.+...
T Consensus       171 ~~~~~--~~-~~~~~~v~~l~~-~m~~-~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~-~~~~~Giit~~dl~~~~~~~  244 (334)
T 2qrd_G          171 SMNCK--ET-AMLRVPLNQMTI-GTWS-NLATASMETKVYDVIKMLAEKNISAVPIVNS-EGTLLNVYESVDVMHLIQDG  244 (334)
T ss_dssp             HHHCG--GG-GGCCCBGGGSSC-SBCS-SCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEETHHHHHHHTTS
T ss_pred             Hhhcc--ch-hhhhCcHHHhCC-cccC-CceEECCCCcHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEHHHHHHHhhcc
Confidence            64311  01 123567777432 3665 8999999999999999999999999999997 78999999999999987642


Q ss_pred             ccccccccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          345 ELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       345 ~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      . + .....++.++|......      ..++++|++++++.++++.|.+++++++||||++| +++|+||.+||++++..
T Consensus       245 ~-~-~~~~~~v~~~m~~~~~~------~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g-~l~Giit~~dil~~~~~  315 (334)
T 2qrd_G          245 D-Y-SNLDLSVGEALLKRPAN------FDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENL-KLEGILSLADILNYIIY  315 (334)
T ss_dssp             C-G-GGGGSBHHHHHTTCCTT------CCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTC-BEEEEEEHHHHHHHHHS
T ss_pred             c-c-ccccCcHHHHHhccccc------CCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCC-eEEEEEeHHHHHHHHHh
Confidence            1 1 12356899999731100      02789999999999999999999999999999887 99999999999999986


Q ss_pred             CCC
Q 013373          425 EPP  427 (444)
Q Consensus       425 e~~  427 (444)
                      +..
T Consensus       316 ~~~  318 (334)
T 2qrd_G          316 DKT  318 (334)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            543

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=100.00  E-value=3.5e-32  Score=266.95  Aligned_cols=301  Identities=15%  Similarity=0.235  Sum_probs=233.0

Q ss_pred             ChHHHHHHHhhcCCccCCCCCCCCCeEEEeCCCCHHHHHHHHHHCCCccCceecCCCCCCCCcccceeEEEehhHHHHHH
Q 013373           32 SLQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWV  111 (444)
Q Consensus        32 ~~~~~~~~~~~~~~v~~~~~~~~~~~i~v~~~~si~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~~Giv~~~di~~~~  111 (444)
                      ...+.++.+|...+|++++. ++.+++++++++|+.+|++.|.+++++++||+|.+.       ++++|+|+..|++..+
T Consensus        23 ~~~~~~~~~l~~~~v~dim~-p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~-------~~~vGivt~~Dll~~l   94 (330)
T 2v8q_E           23 SNSSVYTTFMKSHRCYDLIP-TSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKK-------QSFVGMLTITDFINIL   94 (330)
T ss_dssp             CCSCHHHHHHHHSBGGGGSC-SEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTT-------TEEEEEEEHHHHHHHH
T ss_pred             hhhHHHHHHHHcCcHhhhcc-CCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCC-------CeEEEEEEHHHHHHHH
Confidence            34556889999999999985 567899999999999999999999999999999875       5899999999999876


Q ss_pred             HhhhhHHhhhcccccccccccccccccccchhcccCCCcchhhhhhHHhhhhhhccchhhhccCCCCCccccccccchhH
Q 013373          112 LETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFY  191 (444)
Q Consensus       112 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  191 (444)
                      ..........                       .                              .    ......-..+.
T Consensus        95 ~~~~~~~~~~-----------------------~------------------------------~----~l~~~~~~~~~  117 (330)
T 2v8q_E           95 HRYYKSALVQ-----------------------I------------------------------Y----ELEEHKIETWR  117 (330)
T ss_dssp             HHHHHHHTTT-----------------------C------------------------------C----CGGGCBHHHHH
T ss_pred             HHHHhccccc-----------------------h------------------------------h----HHhhccHHHHH
Confidence            5433211000                       0                              0    00000000110


Q ss_pred             HhhhccCCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecC-CCCcEEEEEeHHHHHHHhhcCCCC
Q 013373          192 KVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEP-GTPDIKNYITQSAVVQGLEGCKGR  270 (444)
Q Consensus       192 ~~l~~~~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~-~~~~l~Givt~~di~~~l~~~~~~  270 (444)
                                 .+++++|.    .+++++.+++++.+|++.|.+++++++||+|+ + |+++|++|..|+++++......
T Consensus       118 -----------~~~~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~-~~~~Givt~~dl~~~~~~~~~~  181 (330)
T 2v8q_E          118 -----------EVYLQDSF----KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPES-GNTLYILTHKRILKFLKLFITE  181 (330)
T ss_dssp             -----------HHHSSSSC----CCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTT-CCEEEEECHHHHHHHHHHHSCS
T ss_pred             -----------HHHhhccc----CCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCC-CcEEEEEcHHHHHHHHHHHhhc
Confidence                       01334555    67999999999999999999999999999997 5 8999999999999988654222


Q ss_pred             CcccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccccc
Q 013373          271 DWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNF  350 (444)
Q Consensus       271 ~~~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~  350 (444)
                      .....+...++.++.  +|+..++.++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|+++.+.... +. .
T Consensus       182 ~~~~~~~~~~v~~~~--v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~~~l~Giit~~dl~~~~~~~~-~~-~  256 (330)
T 2v8q_E          182 FPKPEFMSKSLEELQ--IGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE-KGRVVDIYSKFDVINLAAEKT-YN-N  256 (330)
T ss_dssp             SSCCGGGGSBHHHHT--CSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT-TSBEEEEEEGGGTGGGGGSSC-CC-C
T ss_pred             cCchhhhcCCHHHhc--ccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECC-CCcEEEEEEHHHHHHHHhccc-cc-c
Confidence            222233455666642  244137899999999999999999999999999997 799999999999998775421 11 1


Q ss_pred             ccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013373          351 RQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  425 (444)
Q Consensus       351 ~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e  425 (444)
                      ...++.++|.....      ...++++|++++++.+++++|.+++++++||+|++| +++|+||..||++++..+
T Consensus       257 ~~~~v~~~~~~~~~------~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g-~l~Giit~~Dil~~~~~~  324 (330)
T 2v8q_E          257 LDVSVTKALQHRSH------YFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHD-VVKGIVSLSDILQALVLT  324 (330)
T ss_dssp             CSSBHHHHGGGCCS------CCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTS-BEEEEEEHHHHHHHHHSS
T ss_pred             ccCcHHHHHhcccc------ccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCC-cEEEEEeHHHHHHHHHhh
Confidence            25689999952100      114889999999999999999999999999999887 999999999999999864

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.97  E-value=4.2e-31  Score=253.11  Aligned_cols=245  Identities=18%  Similarity=0.254  Sum_probs=187.6

Q ss_pred             CCCeEEEeCCCCHHHHHHHHHHCCCccCceecCCCCCCCCcccceeEEEehhHHHHHHHhhhhHHhhhcccccccccccc
Q 013373           54 GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVG  133 (444)
Q Consensus        54 ~~~~i~v~~~~si~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~~Giv~~~di~~~~l~~~~~~~~~~~~~~~~~~~~~  133 (444)
                      ..+++++++++|+.+|+++|.++++.++||+|++        ++++|+++..|++..+.                     
T Consensus         8 ~~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~--------~~~~Giv~~~dl~~~~~---------------------   58 (282)
T 2yzq_A            8 TQNPVTITLPATRNYALELFKKYKVRSFPVVNKE--------GKLVGIISVKRILVNPD---------------------   58 (282)
T ss_dssp             EESCCCEESSCC------------CCEEEEECTT--------CCEEEEEESSCC--------------------------
T ss_pred             cCCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCC--------CcEEEEEEHHHHHhhhc---------------------
Confidence            3577899999999999999999999999999975        59999999999885420                     


Q ss_pred             cccccccchhcccCCCcchhhhhhHHhhhhhhccchhhhccCCCCCccccccccchhHHhhhccCCCCCCcHHHhhhhcC
Q 013373          134 TGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYR  213 (444)
Q Consensus       134 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~di~~~~~  213 (444)
                                                                                          ..+++++|.   
T Consensus        59 --------------------------------------------------------------------~~~v~~~m~---   67 (282)
T 2yzq_A           59 --------------------------------------------------------------------EEQLAMLVK---   67 (282)
T ss_dssp             -------------------------------------------------------------------------CCCB---
T ss_pred             --------------------------------------------------------------------cCCHHHHcC---
Confidence                                                                                123556666   


Q ss_pred             CCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHH-HhhcCCCCCcccccccCcccccccCCCCCC
Q 013373          214 WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ-GLEGCKGRDWFDIIASQPISDLGLPFMSSD  292 (444)
Q Consensus       214 ~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~-~l~~~~~~~~~~~~~~~~v~~l~l~im~~~  292 (444)
                       .+++++.+++++.+|++.|.+++++++||+|++ ++++|++|..|+++ ++....      .....++++    +|.. 
T Consensus        68 -~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~-~~~~Giit~~di~~~~~~~~~------~~~~~~v~~----~m~~-  134 (282)
T 2yzq_A           68 -RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSK-GKPVGILTVGDIIRRYFAKSE------KYKGVEIEP----YYQR-  134 (282)
T ss_dssp             -SCCCEEETTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCS------GGGGCBSTT----TSBS-
T ss_pred             -CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhccC------CcccCcHHH----HhCC-
Confidence             458899999999999999999999999999987 89999999999998 765421      113567888    7875 


Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHH------HHhc------CC-----------cc---
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR------HLLL------KP-----------EL---  346 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll------~~l~------~~-----------~~---  346 (444)
                      +++++.+++++.++++.|.+++++++||+|+ +|+++|++|.+|++      +++.      .+           ..   
T Consensus       135 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (282)
T 2yzq_A          135 YVSIVWEGTPLKAALKALLLSNSMALPVVDS-EGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEK  213 (282)
T ss_dssp             CCCCEETTSBHHHHHHHHHTCSSSEEEEECT-TSCEEEEEEGGGGGGCGGGCC---------------------------
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHHHhH
Confidence            8899999999999999999999999999997 78999999999998      4432      00           00   


Q ss_pred             -ccccccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013373          347 -FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  425 (444)
Q Consensus       347 -~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e  425 (444)
                       .......++.++|+.            +++++++++++.+|+++|.+++++++||+|++| +++|+||++||++++..+
T Consensus       214 ~~~~~~~~~v~~im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~lvGiit~~Dil~~~~~~  280 (282)
T 2yzq_A          214 FELQLPNKPVAEIMTR------------DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEG-DLIGLIRDFDLLKVLVKS  280 (282)
T ss_dssp             -----CCCBGGGTCBS------------SCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTT-EEEEEEEHHHHGGGGCC-
T ss_pred             hhhhhccCCHHHhcCC------------CCceeCCCCCHHHHHHHHHHcCcceeEEECCCC-CEEEEEeHHHHHHHHHhh
Confidence             011235678889884            889999999999999999999999999999877 999999999999988754

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.92  E-value=8.8e-24  Score=201.58  Aligned_cols=186  Identities=23%  Similarity=0.394  Sum_probs=158.5

Q ss_pred             CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCc--------ccccccCccccccc
Q 013373          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW--------FDIIASQPISDLGL  286 (444)
Q Consensus       215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~--------~~~~~~~~v~~l~l  286 (444)
                      ++++++.+++++.+|+++|.+++++++||+|++.++++|++|..|+++++........        +....+.++++   
T Consensus        12 ~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---   88 (280)
T 3kh5_A           12 KKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVRE---   88 (280)
T ss_dssp             SCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHHHTTSBGGG---
T ss_pred             CCcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhHHhhhhHHH---
Confidence            5799999999999999999999999999999734899999999999998754321111        11122568888   


Q ss_pred             CCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCC
Q 013373          287 PFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTT  366 (444)
Q Consensus       287 ~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~  366 (444)
                       +|.+ +++++.+++++.++++.|.+++++++||+|+ +|+++|++|.+|+++.+....    ....++.++|..     
T Consensus        89 -im~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~----~~~~~v~~~m~~-----  156 (280)
T 3kh5_A           89 -IMEE-NVITLKENADIDEAIETFLTKNVGGAPIVND-ENQLISLITERDVIRALLDKI----DENEVIDDYITR-----  156 (280)
T ss_dssp             -TSBC-SCCCEETTCBHHHHHHHHHHTTCSEEEEECT-TCBEEEEEEHHHHHHHHGGGS----CTTCBSGGGCBC-----
T ss_pred             -hcCC-CCEEECCCCCHHHHHHHHHhCCCCEEEEEcC-CCEEEEEEEHHHHHHHHhhcC----CCCCCHHHHhCC-----
Confidence             7886 8999999999999999999999999999998 899999999999998875321    123478999974     


Q ss_pred             CCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          367 PDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       367 ~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                             ++.++++++++.++++.|.+++++++||+ ++| +++|+||.+||++.+..
T Consensus       157 -------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~-~~~Givt~~dl~~~~~~  205 (280)
T 3kh5_A          157 -------DVIVATPGERLKDVARTMVRNGFRRLPVV-SEG-RLVGIITSTDFIKLLGS  205 (280)
T ss_dssp             -------SCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETT-EEEEEEEHHHHHHHHTS
T ss_pred             -------CCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECC-EEEEEEEHHHHHHHHhh
Confidence                   88999999999999999999999999999 455 99999999999998853

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.91  E-value=7.4e-24  Score=204.33  Aligned_cols=193  Identities=20%  Similarity=0.298  Sum_probs=167.7

Q ss_pred             CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCC----Ccccc
Q 013373          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR----DWFDI  275 (444)
Q Consensus       200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~----~~~~~  275 (444)
                      ....+|+|+|.    .+++++.+++++.+|++.|.+++++++||+|   ++++|++|..||++.+......    ..+..
T Consensus        17 ~~~~~V~dim~----~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d---~~l~GivT~~Di~~~~~~~~~~~~~~~~~~~   89 (296)
T 3ddj_A           17 FQGMNIETLMI----KNPPILSKEDRLGSAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKDSCSQGDLYH   89 (296)
T ss_dssp             TCCSSGGGTCE----ESCCEECTTSBHHHHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC---CCHHHHHH
T ss_pred             hcccCHHHhcc----CCCcEECCCccHHHHHHHHHHCCCceEEEEC---CeEEEEEeHHHHHHHhcccccccccchhhHH
Confidence            45678999998    6799999999999999999999999999998   6899999999999988543211    11112


Q ss_pred             cccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013373          276 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV  355 (444)
Q Consensus       276 ~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v  355 (444)
                      ....++++    +|++ +++++.+++++.++++.|.+++++++||+|+ +++++|++|.+|+++.+...     ....++
T Consensus        90 ~~~~~v~~----im~~-~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~-~~~lvGivt~~dl~~~~~~~-----~~~~~v  158 (296)
T 3ddj_A           90 ISTTPIID----YMTP-NPVTVYNTSDEFTAINIMVTRNFGSLPVVDI-NDKPVGIVTEREFLLLYKDL-----DEIFPV  158 (296)
T ss_dssp             HHTSBGGG----TSEE-SCCCEETTSCHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHGGGGGGS-----CCCCBH
T ss_pred             HhcccHHH----hccC-CCEEEcCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHhhhcc-----cccccH
Confidence            34678999    7886 8999999999999999999999999999997 79999999999998876421     235589


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhH
Q 013373          356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI  423 (444)
Q Consensus       356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~  423 (444)
                      .++|..            ++.++++++++.++++.|.+++++++||+|+++ +++|+||.+||++.+.
T Consensus       159 ~~~m~~------------~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~  213 (296)
T 3ddj_A          159 KVFMST------------KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDN-KVVGIVTVVNAIKQLA  213 (296)
T ss_dssp             HHHSBC------------SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHH
T ss_pred             HHhhcC------------CCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-EEEEEEEHHHHHHHHH
Confidence            999984            889999999999999999999999999999887 9999999999999886

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.90  E-value=2.8e-23  Score=202.76  Aligned_cols=222  Identities=15%  Similarity=0.228  Sum_probs=168.7

Q ss_pred             CCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCC----CCccccc
Q 013373          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG----RDWFDII  276 (444)
Q Consensus       201 ~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~----~~~~~~~  276 (444)
                      ...++.|+|...  .+++.++.++++.+|++.|.+++++++||+|++.++++|++|..|++.++.....    ...+..+
T Consensus        28 ~~~~~~d~m~~~--~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~~~~~~~~~~~l~~~  105 (323)
T 3t4n_C           28 NSKTSYDVLPVS--YRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKL  105 (323)
T ss_dssp             HHSBHHHHSCSE--EEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHCGGGGGGGGGC
T ss_pred             HhCchHhhCCCC--CcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHHHHcCcchhHHHHHH
Confidence            466899999844  6799999999999999999999999999999875699999999999987642210    1111111


Q ss_pred             ccCccccc--ccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCe-----EEEEEeHHHHHHHhcCCccccc
Q 013373          277 ASQPISDL--GLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKK-----IVGNVSIRDIRHLLLKPELFSN  349 (444)
Q Consensus       277 ~~~~v~~l--~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~-----lvGiIt~~Dll~~l~~~~~~~~  349 (444)
                      ....+.++  ...+|.+ +++++.+++++.+|++.|.+++++++||+|+ ++.     ++|++|.+|+++++........
T Consensus       106 ~~~~v~~i~~~~~~~~~-~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~~~~l~Givt~~di~~~l~~~~~~~~  183 (323)
T 3t4n_C          106 QLDGLKDIERALGVDQL-DTASIHPSRPLFEACLKMLESRSGRIPLIDQ-DEETHREIVVSVLTQYRILKFVALNCRETH  183 (323)
T ss_dssp             BHHHHHHHHHHTTC-----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEE-CTTTCCEEEEEEEEHHHHHHHHHHHCGGGG
T ss_pred             HHHHHHHHHHHhCCCCC-CceEeCCCCcHHHHHHHHHhCCeeEEEEEec-CCCCCccceEEEecHHHHHHHHHhcCCchh
Confidence            11222221  0114565 7899999999999999999999999999997 554     9999999999988753211122


Q ss_pred             cccCcHHHH---hcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCC
Q 013373          350 FRQLTVRDF---MNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP  426 (444)
Q Consensus       350 ~~~~~v~~~---m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~  426 (444)
                      ....++.++   |..            +++++.+++++.++++.|.+++++++||+|++| +++|+||.+||++.+... 
T Consensus       184 ~~~~~v~~~~~~m~~------------~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~-~~~Giit~~dl~~~~~~~-  249 (323)
T 3t4n_C          184 FLKIPIGDLNIITQD------------NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENG-YLINVYEAYDVLGLIKGG-  249 (323)
T ss_dssp             GCCSBGGGTTCSBCT------------TCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEETTHHHHHHHTT-
T ss_pred             hhhCcHHHcCCCCCC------------CcEEECCCCcHHHHHHHHHHcCCCEEEEECCCC-eEEEEEeHHHHHHHHhhc-
Confidence            345688888   653            889999999999999999999999999999887 999999999999988742 


Q ss_pred             CccchhhhhhhHHHhhc
Q 013373          427 PNHLDNYFGFSVKDLLN  443 (444)
Q Consensus       427 ~~~~~~~~~~~~~~~~~  443 (444)
                        .+ ......++++|+
T Consensus       250 --~~-~~~~~~v~~~m~  263 (323)
T 3t4n_C          250 --IY-NDLSLSVGEALM  263 (323)
T ss_dssp             --HH-HHTTSBHHHHGG
T ss_pred             --hh-hhccCCHHHHHh
Confidence              11 122445666554

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.87  E-value=5e-22  Score=189.82  Aligned_cols=177  Identities=18%  Similarity=0.307  Sum_probs=138.4

Q ss_pred             cHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccc
Q 013373          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  283 (444)
Q Consensus       204 ~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~  283 (444)
                      +++++|.    .+++++.+++++.+|+++|.+++++++||+|++ ++++|++|..|++..+            ...++++
T Consensus         2 ~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~-~~~~Giv~~~dl~~~~------------~~~~v~~   64 (282)
T 2yzq_A            2 RVKTIMT----QNPVTITLPATRNYALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNP------------DEEQLAM   64 (282)
T ss_dssp             BHHHHSE----ESCCCEESSCC------------CCEEEEECTT-CCEEEEEESSCC----------------------C
T ss_pred             chHHhcc----CCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhhh------------ccCCHHH
Confidence            5788888    669999999999999999999999999999975 8999999999987543            2357888


Q ss_pred             cccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH-HhcCCccccccccCcHHHHhccc
Q 013373          284 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH-LLLKPELFSNFRQLTVRDFMNAV  362 (444)
Q Consensus       284 l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~-~l~~~~~~~~~~~~~v~~~m~~~  362 (444)
                          +|.+ ++.++.+++++.++++.|.+++.+.+||+|+ +|+++|++|.+|+++ .+.....   ....++.++|.. 
T Consensus        65 ----~m~~-~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~-~~~~~Giit~~di~~~~~~~~~~---~~~~~v~~~m~~-  134 (282)
T 2yzq_A           65 ----LVKR-DVPVVKENDTLKKAAKLMLEYDYRRVVVVDS-KGKPVGILTVGDIIRRYFAKSEK---YKGVEIEPYYQR-  134 (282)
T ss_dssp             ----CCBS-CCCEEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHTTTTCSG---GGGCBSTTTSBS-
T ss_pred             ----HcCC-CCcEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHHHHHhccCC---cccCcHHHHhCC-
Confidence                6876 7899999999999999999999999999998 789999999999998 7653211   235578888874 


Q ss_pred             CCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHH
Q 013373          363 VPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVI  419 (444)
Q Consensus       363 ~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl  419 (444)
                                 +++++++++++.++++.|.+++++++||+|+++ +++|+||.+|++
T Consensus       135 -----------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~-~~~Giit~~dl~  179 (282)
T 2yzq_A          135 -----------YVSIVWEGTPLKAALKALLLSNSMALPVVDSEG-NLVGIVDETDLL  179 (282)
T ss_dssp             -----------CCCCEETTSBHHHHHHHHHTCSSSEEEEECTTS-CEEEEEEGGGGG
T ss_pred             -----------CCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCC-eEEEEEEHHHHh
Confidence                       789999999999999999999999999999887 999999999999

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.87  E-value=4.5e-21  Score=187.95  Aligned_cols=207  Identities=14%  Similarity=0.142  Sum_probs=160.0

Q ss_pred             CCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCC----CCCcccccc
Q 013373          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK----GRDWFDIIA  277 (444)
Q Consensus       202 ~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~----~~~~~~~~~  277 (444)
                      ..+++|+|...  .+++++++++++.+|++.|.+++++++||+|.+.++++|++|.+|++.++....    ....+..+.
T Consensus        21 ~~~v~dim~~~--~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~~~~~~~~~~~~~~   98 (334)
T 2qrd_G           21 SRTSYDVLPTS--FRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEID   98 (334)
T ss_dssp             HSBGGGGSCSE--EEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGG
T ss_pred             cCchhhhCCCC--CCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHhhccCCccHHHHHh
Confidence            46799999733  568999999999999999999999999999986579999999999998764211    111111222


Q ss_pred             cCcccccc---cCCCCCCCc--eEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCe----EEEEEeHHHHHHHhcCCcccc
Q 013373          278 SQPISDLG---LPFMSSDEV--ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKK----IVGNVSIRDIRHLLLKPELFS  348 (444)
Q Consensus       278 ~~~v~~l~---l~im~~~~~--~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~----lvGiIt~~Dll~~l~~~~~~~  348 (444)
                      ..++..+.   -.+|.. ++  +++.+++++.++++.|.+++++++||+|+.+++    ++|++|.+|+++++.......
T Consensus        99 ~~~~~~i~~~l~~im~~-~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~~~  177 (334)
T 2qrd_G           99 KFRLLGLREVERKIGAI-PPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKET  177 (334)
T ss_dssp             SCBHHHHHHHHHHHTCS-CSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCGGG
T ss_pred             hhchhhHHHHHHhhccC-CCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhccch
Confidence            33333310   002443 45  899999999999999999999999999862234    999999999998875211000


Q ss_pred             ccccCcHHHH---hcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          349 NFRQLTVRDF---MNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       349 ~~~~~~v~~~---m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      .....++.++   |..            ++.++++++++.++++.|.+++++++||+|++| +++|+||.+||++.+..
T Consensus       178 ~~~~~~v~~l~~~m~~------------~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~-~~~Giit~~dl~~~~~~  243 (334)
T 2qrd_G          178 AMLRVPLNQMTIGTWS------------NLATASMETKVYDVIKMLAEKNISAVPIVNSEG-TLLNVYESVDVMHLIQD  243 (334)
T ss_dssp             GGCCCBGGGSSCSBCS------------SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEETHHHHHHHTT
T ss_pred             hhhhCcHHHhCCcccC------------CceEECCCCcHHHHHHHHHHcCCcEEEEEcCCC-cEEEEEEHHHHHHHhhc
Confidence            1224577774   553            789999999999999999999999999999887 99999999999998765

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.86  E-value=6.2e-21  Score=186.73  Aligned_cols=204  Identities=13%  Similarity=0.118  Sum_probs=160.4

Q ss_pred             CCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCC--CCcccccccC
Q 013373          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG--RDWFDIIASQ  279 (444)
Q Consensus       202 ~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~--~~~~~~~~~~  279 (444)
                      ..+++|+|...  .+++++++++++.+|++.|.+++++++||+|.+.++++|++|..|++..+.....  ......+...
T Consensus        34 ~~~v~dim~p~--~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~~~~~~l~~~  111 (330)
T 2v8q_E           34 SHRCYDLIPTS--SKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEH  111 (330)
T ss_dssp             HSBGGGGSCSE--EEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGC
T ss_pred             cCcHhhhccCC--CcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccccchhHHhhc
Confidence            55799999422  6699999999999999999999999999999865689999999999987653210  0001111111


Q ss_pred             -------cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCc---cccc
Q 013373          280 -------PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE---LFSN  349 (444)
Q Consensus       280 -------~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~---~~~~  349 (444)
                             ++++    +|.+ +++++.+++++.++++.|.+++++++||+|+++|+++|++|.+|+++++....   ....
T Consensus       112 ~~~~~~~~~~~----im~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~~~~~  186 (330)
T 2v8q_E          112 KIETWREVYLQ----DSFK-PLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPE  186 (330)
T ss_dssp             BHHHHHHHHSS----SSCC-CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSSSCCG
T ss_pred             cHHHHHHHHhh----cccC-CceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhccCchh
Confidence                   2234    6776 89999999999999999999999999999853488999999999998874210   0111


Q ss_pred             cccCcHHHH--hcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          350 FRQLTVRDF--MNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       350 ~~~~~v~~~--m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      +...++.++  |..           .++.++.+++++.++++.|.+++++++||+|+++ +++|+||.+||++.+..
T Consensus       187 ~~~~~v~~~~v~~~-----------~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~-~l~Giit~~dl~~~~~~  251 (330)
T 2v8q_E          187 FMSKSLEELQIGTY-----------ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKG-RVVDIYSKFDVINLAAE  251 (330)
T ss_dssp             GGGSBHHHHTCSBC-----------SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTS-BEEEEEEGGGTGGGGGS
T ss_pred             hhcCCHHHhcccCc-----------CCceEECCCCCHHHHHHHHHHcCCCeEEEECCCC-cEEEEEEHHHHHHHHhc
Confidence            224466666  321           2789999999999999999999999999999887 99999999999998764

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.82  E-value=4.4e-20  Score=163.32  Aligned_cols=129  Identities=29%  Similarity=0.472  Sum_probs=112.6

Q ss_pred             ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcc----------
Q 013373          277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL----------  346 (444)
Q Consensus       277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~----------  346 (444)
                      ...+|++    +|++ +++++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+|+++.......          
T Consensus        16 ~~~~V~d----iM~~-~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~   89 (170)
T 4esy_A           16 RQVPIRD----ILTS-PVVTVREDDTLDAVAKTMLEHQIGCAPVVDQ-NGHLVGIITESDFLRGSIPFWIYEASEILSRA   89 (170)
T ss_dssp             HTSBGGG----GCCS-CCCCEETTSBHHHHHHHHHHTTCSEEEEECT-TSCEEEEEEGGGGGGGTCCTTHHHHHHHHTTT
T ss_pred             cCCCHHH----hcCC-CCcEECCcCcHHHHHHHHHHcCCeEEEEEcC-CccEEEEEEHHHHHHHHhhccccchhhhhhhc
Confidence            4678999    8987 8999999999999999999999999999998 8999999999999876543211          


Q ss_pred             ---------ccccccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHH
Q 013373          347 ---------FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRD  417 (444)
Q Consensus       347 ---------~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~D  417 (444)
                               +......++.++|+.            ++++|++++++.+|+++|.+++++++||+|+ | +++|+||++|
T Consensus        90 ~~~~~~~~~~~~~~~~~v~~im~~------------~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~-g-~lvGivt~~D  155 (170)
T 4esy_A           90 IPAPEVEHLFETGRKLTASAVMTQ------------PVVTAAPEDSVGSIADQMRRHGIHRIPVVQD-G-VPVGIVTRRD  155 (170)
T ss_dssp             SCHHHHHHHHHHHTTCBHHHHCBC------------CSCCBCTTSBHHHHHHHHHHTTCSEEEEEET-T-EEEEEEEHHH
T ss_pred             cchhhHHhhhccccccchhhhccc------------CcccCCcchhHHHHHHHHHHcCCcEEEEEEC-C-EEEEEEEHHH
Confidence                     112335689999985            8999999999999999999999999999985 5 9999999999


Q ss_pred             HHHHhHcC
Q 013373          418 VISCFIFE  425 (444)
Q Consensus       418 Il~~l~~e  425 (444)
                      |+++++.+
T Consensus       156 il~~l~~~  163 (170)
T 4esy_A          156 LLKLLLLE  163 (170)
T ss_dssp             HTTTSCCC
T ss_pred             HHHHHHhc
Confidence            99999864

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.80  E-value=4.3e-19  Score=157.30  Aligned_cols=130  Identities=14%  Similarity=0.221  Sum_probs=111.3

Q ss_pred             cccCcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCC-CeEEEEEeHHHHHHHhcCCccccccccC
Q 013373          276 IASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFSNFRQL  353 (444)
Q Consensus       276 ~~~~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~-~~lvGiIt~~Dll~~l~~~~~~~~~~~~  353 (444)
                      +...++++    +|++ .+++++++++++.+|++.|.+++++++||+|+ + ++++|+||.+|+++.+...      ...
T Consensus        39 l~~~~v~d----iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~-~~~~lvGivt~~dl~~~~~~~------~~~  107 (172)
T 3lhh_A           39 LDERTISS----LMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRN-NVDDMVGIISAKQLLSESIAG------ERL  107 (172)
T ss_dssp             ----CTTT----TSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESS-STTSEEEEEEHHHHHHHHHTT------CCC
T ss_pred             cCCCCHHH----hCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeC-CCCeEEEEEEHHHHHHHHhhc------Ccc
Confidence            35678889    7873 27899999999999999999999999999997 6 8999999999999887532      256


Q ss_pred             cHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCccc
Q 013373          354 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHL  430 (444)
Q Consensus       354 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~~~  430 (444)
                      ++.++| .            +++++++++++.++++.|.+++++++||+|++| +++|+||+.||++.+.++..+.+
T Consensus       108 ~v~~im-~------------~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g-~lvGiit~~Dil~~l~~~~~de~  170 (172)
T 3lhh_A          108 ELVDLV-K------------NCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYG-DLKGLVTLQDMMDALTGEFFQED  170 (172)
T ss_dssp             CGGGGC-B------------CCEEEETTCCHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHHTTCC---
T ss_pred             cHHHHh-c------------CCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCC-CEEEEeeHHHHHHHHhCCCcccc
Confidence            899999 4            889999999999999999999999999999988 99999999999999998665544

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.78  E-value=2.1e-18  Score=145.41  Aligned_cols=126  Identities=20%  Similarity=0.268  Sum_probs=109.1

Q ss_pred             cccCcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCC-CeEEEEEeHHHHHHHhcCCccccccccC
Q 013373          276 IASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFSNFRQL  353 (444)
Q Consensus       276 ~~~~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~-~~lvGiIt~~Dll~~l~~~~~~~~~~~~  353 (444)
                      +...++++    +|++ .+++++.+++++.+|++.|.+++++++||+|+ + ++++|++|.+|+++.+....     ...
T Consensus         3 l~~~~v~~----iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-~~~~~~Givt~~dl~~~~~~~~-----~~~   72 (130)
T 3i8n_A            3 AQDVPVTQ----VMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSE-QKDNIIGFVHRLELFKMQQSGS-----GQK   72 (130)
T ss_dssp             ----CCTT----TSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESS-STTCEEEECCHHHHHHHHHTTT-----TTS
T ss_pred             cCcCCHhh----CCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeC-CCCcEEEEEEHHHHHHHHhcCC-----CcC
Confidence            35678889    7875 25679999999999999999999999999997 5 89999999999998875421     256


Q ss_pred             cHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013373          354 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  425 (444)
Q Consensus       354 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e  425 (444)
                      ++.++|+             ++.++++++++.++++.|.+++.+++||+|++| +++|+||+.||++.+++|
T Consensus        73 ~v~~~m~-------------~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g-~~vGivt~~dil~~l~ge  130 (130)
T 3i8n_A           73 QLGAVMR-------------PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYG-TVLGLVTLEDIFEHLVGE  130 (130)
T ss_dssp             BHHHHSE-------------ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTS-CEEEEEEHHHHHHHHHTC
T ss_pred             CHHHHhc-------------CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCC-CEEEEEEHHHHHHHHcCC
Confidence            8999996             678999999999999999999999999999987 999999999999999863

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.77  E-value=2e-18  Score=145.68  Aligned_cols=126  Identities=13%  Similarity=0.214  Sum_probs=108.6

Q ss_pred             CcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHH
Q 013373          279 QPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRD  357 (444)
Q Consensus       279 ~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~  357 (444)
                      .++++    +|++ .+++++.+++++.+|++.|.+++++++||+++++++++|++|.+|+++.+.....   +...++.+
T Consensus         2 ~~v~~----iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~---~~~~~v~~   74 (130)
T 3hf7_A            2 VSVND----IMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE---FTKEIMLR   74 (130)
T ss_dssp             CBHHH----HSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSC---CCHHHHHH
T ss_pred             cCHHH----hCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCc---cchhhHHH
Confidence            35667    6863 3689999999999999999999999999997535899999999999998764321   23457899


Q ss_pred             HhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013373          358 FMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  425 (444)
Q Consensus       358 ~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e  425 (444)
                      +|.             ++.++++++++.++++.|.+++++++||+|++| +++|+||+.||++.+.++
T Consensus        75 ~m~-------------~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g-~lvGiit~~Dil~~l~g~  128 (130)
T 3hf7_A           75 AAD-------------EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYG-DIQGLVTVEDILEEIVGD  128 (130)
T ss_dssp             HSB-------------CCCEEETTCBHHHHHHHHHHHCCCEEEEECTTS-CEEEEEEHHHHHHHHHC-
T ss_pred             hcc-------------CCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCC-CEEEEeeHHHHHHHHhCC
Confidence            995             789999999999999999999999999999887 999999999999999874

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.77  E-value=6.7e-19  Score=153.58  Aligned_cols=129  Identities=18%  Similarity=0.245  Sum_probs=108.8

Q ss_pred             ccCcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccc-cccccCc
Q 013373          277 ASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF-SNFRQLT  354 (444)
Q Consensus       277 ~~~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~-~~~~~~~  354 (444)
                      ...++++    +|.+ +++.++.+++++.+|+++|.+++++++||+|+ +++++|++|.+|+++++...... ......+
T Consensus        13 l~~~~~~----iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~-~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~   87 (156)
T 3k6e_A           13 LLGQEET----FLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD-EKQFVGTIGLRDIMAYQMEHDLSQEIMADTD   87 (156)
T ss_dssp             HHTTGGG----GEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC--CBEEEEEEHHHHHHHHHHHTCCHHHHTTSB
T ss_pred             hhccHHH----hCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEecchhhhhhhcccccccccccC
Confidence            3456777    6765 47899999999999999999999999999997 79999999999998876532211 1234678


Q ss_pred             HHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013373          355 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  425 (444)
Q Consensus       355 v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e  425 (444)
                      +.++|.+            ++.++++++++.++++.|.+++  .+||||++| +++|+||++||++.+.+.
T Consensus        88 v~~im~~------------~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g-~l~GiiT~~Dil~~~~~~  143 (156)
T 3k6e_A           88 IVHMTKT------------DVAVVSPDFTITEVLHKLVDES--FLPVVDAEG-IFQGIITRKSILKAVNAL  143 (156)
T ss_dssp             GGGTCBC------------SCCCBCTTCCHHHHHHHTTTSS--EEEEECTTS-BEEEEEEHHHHHHHHHHH
T ss_pred             HHHhhcC------------CceecccccHHHHHHHHHHHcC--CeEEEecCC-EEEEEEEHHHHHHHHHHH
Confidence            9999985            8999999999999999998876  499999998 999999999999999653

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.77  E-value=1.6e-18  Score=145.52  Aligned_cols=123  Identities=16%  Similarity=0.323  Sum_probs=106.6

Q ss_pred             CcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCC-CeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013373          279 QPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFSNFRQLTVR  356 (444)
Q Consensus       279 ~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~-~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~  356 (444)
                      .++++    +|++ .+++++.+++++.+|++.|.+++++++||+|+ + ++++|++|.+|+++.+...     ....++.
T Consensus         3 ~~v~d----iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-~~~~~vGivt~~dl~~~~~~~-----~~~~~v~   72 (127)
T 3nqr_A            3 QRVRD----IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE-DKDHIEGILMAKDLLPFMRSD-----AEAFSMD   72 (127)
T ss_dssp             CBHHH----HSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS-STTCEEEEEEGGGGGGGGSTT-----CCCCCHH
T ss_pred             cCHHH----hcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcC-CCCcEEEEEEHHHHHHHHhcc-----CCCCCHH
Confidence            46777    6875 24899999999999999999999999999997 6 8999999999998876532     1356899


Q ss_pred             HHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013373          357 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  425 (444)
Q Consensus       357 ~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e  425 (444)
                      ++|.             ++.++++++++.++++.|.+++++++||+|++| +++|+||+.||++.+++|
T Consensus        73 ~~m~-------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~~~Giit~~dll~~l~ge  127 (127)
T 3nqr_A           73 KVLR-------------TAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFG-GVSGLVTIEDILELIVGE  127 (127)
T ss_dssp             HHCB-------------CCCEEETTCBHHHHHHHHHHTTCCEEEEECTTS-CEEEEEEHHHHHHHC---
T ss_pred             HHcC-------------CCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCC-CEEEEEEHHHHHHHHhCC
Confidence            9996             578999999999999999999999999999887 999999999999998763

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.76  E-value=8.9e-19  Score=148.98  Aligned_cols=130  Identities=18%  Similarity=0.313  Sum_probs=107.1

Q ss_pred             CcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCC-CeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013373          279 QPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFSNFRQLTVR  356 (444)
Q Consensus       279 ~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~-~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~  356 (444)
                      .++++    +|++ .+++++.+++++.+|++.|.+++++++||+++ + ++++|+||.+|+++.+....    ....++.
T Consensus         3 ~~v~~----iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~-~~~~~vGivt~~dl~~~~~~~~----~~~~~v~   73 (136)
T 3lfr_A            3 LQVRD----IMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGE-SHDDVLGVLLAKDLLPLILKAD----GDSDDVK   73 (136)
T ss_dssp             CBHHH----HSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS-STTCEEEEEEGGGGGGGGGSSS----GGGCCGG
T ss_pred             CChHh----ccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcC-CCCcEEEEEEHHHHHHHHHhcc----CCCcCHH
Confidence            46777    6873 26899999999999999999999999999997 5 79999999999998865311    2356899


Q ss_pred             HHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCccch
Q 013373          357 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLD  431 (444)
Q Consensus       357 ~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~~~~  431 (444)
                      ++|+             +++++.+++++.+++++|.+++++++||+|++| +++|+||++||++.+.++..+.|+
T Consensus        74 ~~m~-------------~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g-~lvGiit~~Dil~~l~~~~~de~~  134 (136)
T 3lfr_A           74 KLLR-------------PATFVPESKRLNVLLREFRANHNHMAIVIDEYG-GVAGLVTIEDVLEQIVGDIEDEHD  134 (136)
T ss_dssp             GTCB-------------CCCEEETTCBHHHHHHHHHHHTCCEEEEECTTS-CEEEEEEHHHHHTTC---------
T ss_pred             HHcC-------------CCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCC-CEEEEEEHHHHHHHHhCCCcCccc
Confidence            9996             689999999999999999999999999999987 999999999999999986555443

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.76  E-value=7.2e-18  Score=145.31  Aligned_cols=125  Identities=17%  Similarity=0.310  Sum_probs=111.7

Q ss_pred             cccCcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCC-CeEEEEEeHHHHHHHhcCCccccccccC
Q 013373          276 IASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFSNFRQL  353 (444)
Q Consensus       276 ~~~~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~-~~lvGiIt~~Dll~~l~~~~~~~~~~~~  353 (444)
                      +...++++    +|++ .+++++.+++++.+|++.|.+++++++||+|+ + ++++|+||.+|+++.+...      ...
T Consensus        20 l~~~~v~d----iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-~~~~lvGivt~~dl~~~~~~~------~~~   88 (148)
T 3lv9_A           20 FEEKKIRE----IMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRK-NKDDILGFVHIRDLYNQKINE------NKI   88 (148)
T ss_dssp             GGTCBGGG----TSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESS-STTSEEEEEEHHHHHHHHHHH------SCC
T ss_pred             cCCCCHHH----ccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC-CCCcEEEEEEHHHHHHHHhcC------CCc
Confidence            35678999    7874 36899999999999999999999999999997 6 8999999999999886531      156


Q ss_pred             cHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013373          354 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  425 (444)
Q Consensus       354 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e  425 (444)
                      ++.++| .            ++.++++++++.++++.|.+++.+++||+|++| +++|+||+.||++.++++
T Consensus        89 ~v~~~m-~------------~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g-~~~Giit~~dil~~l~~~  146 (148)
T 3lv9_A           89 ELEEIL-R------------DIIYISENLTIDKALERIRKEKLQLAIVVDEYG-GTSGVVTIEDILEEIVGE  146 (148)
T ss_dssp             CGGGTC-B------------CCEEEETTSBHHHHHHHHHHHTCSEEEEECTTS-SEEEEEEHHHHHHHHHHT
T ss_pred             cHHHhc-C------------CCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCC-CEEEEEEHHHHHHHHhCc
Confidence            889999 4            889999999999999999999999999999988 999999999999999875

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.75  E-value=4.2e-18  Score=143.36  Aligned_cols=124  Identities=16%  Similarity=0.344  Sum_probs=107.8

Q ss_pred             ccCcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013373          277 ASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV  355 (444)
Q Consensus       277 ~~~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v  355 (444)
                      ...++++    +|++ .+++++.+++++.+|++.|.+++++++||++++.++++|+||.+|+++.+..       ...++
T Consensus         3 ~~~~v~d----iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~-------~~~~v   71 (129)
T 3jtf_A            3 AERTVAD----IMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLE-------PALDI   71 (129)
T ss_dssp             -CCBHHH----HCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTC-------TTSCG
T ss_pred             CCCCHHH----hCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhcc-------CCcCH
Confidence            3467888    7873 2678999999999999999999999999999722899999999999887642       24578


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013373          356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  425 (444)
Q Consensus       356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e  425 (444)
                      .++|.             +++++.+++++.++++.|.+++.+++||+|++| +++|+||+.||++.++++
T Consensus        72 ~~~m~-------------~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g-~~~Giit~~Dil~~l~ge  127 (129)
T 3jtf_A           72 RSLVR-------------PAVFIPEVKRLNVLLREFRASRNHLAIVIDEHG-GISGLVTMEDVLEQIVGD  127 (129)
T ss_dssp             GGGCB-------------CCCEEETTCBHHHHHHHHHTSSCCEEEEECC-C-CEEEEEEHHHHHHHHHHT
T ss_pred             HHHhC-------------CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCC-CEEEEEEHHHHHHHHhCC
Confidence            89986             678999999999999999999999999999987 999999999999999875

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.74  E-value=1.9e-17  Score=155.13  Aligned_cols=193  Identities=13%  Similarity=0.193  Sum_probs=137.5

Q ss_pred             CCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCccc-------
Q 013373          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD-------  274 (444)
Q Consensus       202 ~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~-------  274 (444)
                      ..+|+++|.    .+++++.+++++.+|+++|.+++++++||+|++ |+++|++|..|+++.+........+.       
T Consensus         6 ~~~v~~im~----~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~   80 (245)
T 3l2b_A            6 KLKVEDLEM----DKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGN-NHLLGMLSTSNITATYMDIWDSNILAKSATSLD   80 (245)
T ss_dssp             CCBGGGSCC----BCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHH
T ss_pred             cCcHHHhcC----CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHH
Confidence            457999998    668999999999999999999999999999987 89999999999999876432111000       


Q ss_pred             c---------------------------cccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCC---
Q 013373          275 I---------------------------IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ---  324 (444)
Q Consensus       275 ~---------------------------~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~---  324 (444)
                      .                           +....+.+    .+..+.++.+ .+  -.++...+.+.+++++++++..   
T Consensus        81 ~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~----~~~~~~ivIv-gd--r~~~~~~~i~~~~~~liit~~~~~~  153 (245)
T 3l2b_A           81 NILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKE----FISEGDIAIA-GD--RAEIQAELIELKVSLLIVTGGHTPS  153 (245)
T ss_dssp             HHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGG----TCCTTCEEEE-CS--CHHHHHHHHHTTCSEEEECTTCCCC
T ss_pred             HHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHh----cCCCCCEEEE-CC--CHHHHHHHHHcCCCEEEECCCCCCC
Confidence            0                           00111222    2333234333 33  3688888999999999888531   


Q ss_pred             --------CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCC
Q 013373          325 --------QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSV  396 (444)
Q Consensus       325 --------~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~  396 (444)
                              ++.+..+.+..|.......  .   ....++.++|++           .++.++++++++.+++++|.++++
T Consensus       154 ~~v~~~a~~~~~~~i~t~~d~~~~~~~--~---~~~~~v~~im~~-----------~~~~~~~~~~~~~~~~~~m~~~~~  217 (245)
T 3l2b_A          154 KEIIELAKKNNITVITTPHDSFTASRL--I---VQSLPVDYVMTK-----------DNLVAVSTDDLVEDVKVTMSETRY  217 (245)
T ss_dssp             HHHHHHHHHHTCEEEECSSCHHHHHHH--G---GGGSBHHHHSBC-----------TTCCCEETTSBHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCeEEEeCCChHHHHHH--H---hcCCceeeEecC-----------CccEEECCCCcHHHHHHHHHhcCC
Confidence                    1123456666665443221  1   235689999982           288999999999999999999999


Q ss_pred             CEEEEEeCCCCeEEEEEeHHHHHHHhH
Q 013373          397 HRIYVVAGEEAEVVGVITLRDVISCFI  423 (444)
Q Consensus       397 ~~l~VVd~~~~~lvGvIT~~DIl~~l~  423 (444)
                      +++||+|++| +++|+||.+|++++..
T Consensus       218 ~~~pVvd~~~-~~~Giit~~dll~~~~  243 (245)
T 3l2b_A          218 SNYPVIDENN-KVVGSIARFHLISTHK  243 (245)
T ss_dssp             SEEEEECTTC-BEEEEEECC-------
T ss_pred             ceEEEEcCCC-eEEEEEEHHHhhchhh
Confidence            9999999887 9999999999998653

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.74  E-value=2.2e-18  Score=152.27  Aligned_cols=131  Identities=24%  Similarity=0.343  Sum_probs=111.0

Q ss_pred             CCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCC----------
Q 013373          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR----------  270 (444)
Q Consensus       201 ~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~----------  270 (444)
                      ...+|+|+|.    .+++++.+++++.+|+++|.+++++++||+|++ |+++|+||..|+++.+......          
T Consensus        16 ~~~~V~diM~----~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~   90 (170)
T 4esy_A           16 RQVPIRDILT----SPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQN-GHLVGIITESDFLRGSIPFWIYEASEILSRAI   90 (170)
T ss_dssp             HTSBGGGGCC----SCCCCEETTSBHHHHHHHHHHTTCSEEEEECTT-SCEEEEEEGGGGGGGTCCTTHHHHHHHHTTTS
T ss_pred             cCCCHHHhcC----CCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCC-ccEEEEEEHHHHHHHHhhccccchhhhhhhcc
Confidence            3568999998    779999999999999999999999999999987 8999999999998765432100          


Q ss_pred             ------CcccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373          271 ------DWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (444)
Q Consensus       271 ------~~~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~  343 (444)
                            .........++++    +|++ +++++.+++++.+|+++|.+++++++||+|  +|+++|+||.+||++++..
T Consensus        91 ~~~~~~~~~~~~~~~~v~~----im~~-~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd--~g~lvGivt~~Dil~~l~~  162 (170)
T 4esy_A           91 PAPEVEHLFETGRKLTASA----VMTQ-PVVTAAPEDSVGSIADQMRRHGIHRIPVVQ--DGVPVGIVTRRDLLKLLLL  162 (170)
T ss_dssp             CHHHHHHHHHHHTTCBHHH----HCBC-CSCCBCTTSBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHTTTSCC
T ss_pred             chhhHHhhhccccccchhh----hccc-CcccCCcchhHHHHHHHHHHcCCcEEEEEE--CCEEEEEEEHHHHHHHHHh
Confidence                  0111223567888    7986 899999999999999999999999999998  6899999999999988753

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.74  E-value=1.3e-17  Score=138.48  Aligned_cols=119  Identities=28%  Similarity=0.377  Sum_probs=107.1

Q ss_pred             cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHh
Q 013373          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFM  359 (444)
Q Consensus       280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m  359 (444)
                      ++++    +|.+ ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+++.+|+++.+...       ..++.++|
T Consensus         2 ~v~~----im~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~G~vt~~dl~~~~~~~-------~~~v~~~~   68 (122)
T 3kpb_A            2 LVKD----ILSK-PPITAHSNISIMEAAKILIKHNINHLPIVDE-HGKLVGIITSWDIAKALAQN-------KKTIEEIM   68 (122)
T ss_dssp             BHHH----HCCS-CCCCEETTSBHHHHHHHHHHHTCSCEEEECT-TSBEEEEECHHHHHHHHHTT-------CCBGGGTS
T ss_pred             chHH----hhCC-CCEEeCCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEEHHHHHHHHHhc-------ccCHHHHh
Confidence            4566    6886 8999999999999999999999999999998 89999999999999887642       23799999


Q ss_pred             cccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          360 NAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      ..            ++.++++++++.++++.|.+++.+++||+|++| +++|+||..||++++..
T Consensus        69 ~~------------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g-~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           69 TR------------NVITAHEDEPVDHVAIKMSKYNISGVPVVDDYR-RVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             BS------------SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEEHHHHHHHHC-
T ss_pred             cC------------CCeEECCCCCHHHHHHHHHHhCCCeEEEECCCC-CEEEEEeHHHHHHHhhc
Confidence            74            889999999999999999999999999999987 99999999999998865

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.74  E-value=6e-17  Score=138.32  Aligned_cols=137  Identities=18%  Similarity=0.383  Sum_probs=111.1

Q ss_pred             ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013373          277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVR  356 (444)
Q Consensus       277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~  356 (444)
                      ...+++++.. +|.. +++++.+++++.+|++.|.+++++.+||+|+ +++++|+++.+|+++.+.... + .....++.
T Consensus         6 ~~~~v~~~~~-~~~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~-~-~~~~~~v~   80 (144)
T 2nyc_A            6 LKIPIGDLNI-ITQD-NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE-NGYLINVYEAYDVLGLIKGGI-Y-NDLSLSVG   80 (144)
T ss_dssp             GGSBGGGSSC-CBCS-SCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHTC------CCSBHH
T ss_pred             hhcchhhcCC-CCCC-CceEECCCCcHHHHHHHHHHcCcceeeEEcC-CCcEEEEEcHHHHHHHhcccc-c-ccCCccHH
Confidence            4567777654 5665 8999999999999999999999999999998 799999999999998865321 1 12356899


Q ss_pred             HHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013373          357 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  425 (444)
Q Consensus       357 ~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e  425 (444)
                      ++|.....      ...++.++++++++.++++.|.+++.+++||+|++| +++|+||.+||++++..+
T Consensus        81 ~~m~~~~~------~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g-~~~Giit~~dil~~l~~~  142 (144)
T 2nyc_A           81 EALMRRSD------DFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVG-RLVGVLTLSDILKYILLG  142 (144)
T ss_dssp             HHHHHCC------------CEECTTSBHHHHHHHHHHHTCSEEEEECTTS-BEEEEEEHHHHHHHHHHC
T ss_pred             HHHhcCcc------ccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCC-CEEEEEEHHHHHHHHHhc
Confidence            99974100      001578999999999999999999999999999887 999999999999998764

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.74  E-value=4.6e-18  Score=147.51  Aligned_cols=131  Identities=18%  Similarity=0.226  Sum_probs=110.1

Q ss_pred             ccCcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEE-eCCCCeEEEEEeHHHHHHHhcCCccccccccCc
Q 013373          277 ASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVV-EGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLT  354 (444)
Q Consensus       277 ~~~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVv-d~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~  354 (444)
                      ...++++    +|++ .+++++.+++++.+|++.|.+++++++||+ ++++++++|+||.+|+++.+...      ...+
T Consensus        18 ~~~~v~~----iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~------~~~~   87 (153)
T 3oco_A           18 NDKVASD----VMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARID------DKAK   87 (153)
T ss_dssp             HHCBHHH----HSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHH------TTSB
T ss_pred             CCCEeee----EecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcC------CCCc
Confidence            4578899    7874 368999999999999999999999999999 54248999999999999886531      1568


Q ss_pred             HHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCccch
Q 013373          355 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLD  431 (444)
Q Consensus       355 v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~~~~  431 (444)
                      +.++| .            ++.++.+++++.++++.|.+++++++||+|++| +++|+||+.||++.+.++..+.++
T Consensus        88 v~~~m-~------------~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g-~~vGivt~~dil~~l~~~~~de~~  150 (153)
T 3oco_A           88 ISTIM-R------------DIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYG-GTSGIITDKDVYEELFGNLRDEQD  150 (153)
T ss_dssp             GGGTC-B------------CCEEEETTSBHHHHHHHHHHTTCSCEEEECTTS-CEEEEECHHHHHHHHHC-------
T ss_pred             HHHHh-C------------CCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCC-CEEEEeeHHHHHHHHhccCCCccc
Confidence            99999 4            889999999999999999999999999999987 999999999999999986555443

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.73  E-value=5.1e-17  Score=137.88  Aligned_cols=125  Identities=26%  Similarity=0.424  Sum_probs=110.4

Q ss_pred             ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHH-HHHhcCCccccccccCcH
Q 013373          277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI-RHLLLKPELFSNFRQLTV  355 (444)
Q Consensus       277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dl-l~~l~~~~~~~~~~~~~v  355 (444)
                      ...++++    +|++ ++.++.+++++.++++.|.+++++++||+|+ +++++|+++.+|+ ++++....    ....++
T Consensus         6 ~~~~v~~----im~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~----~~~~~v   75 (138)
T 2p9m_A            6 KNIKVKD----VMTK-NVITAKRHEGVVEAFEKMLKYKISSLPVIDD-ENKVIGIVTTTDIGYNLIRDKY----TLETTI   75 (138)
T ss_dssp             TTCBGGG----TSBC-SCCCEETTSBHHHHHHHHHHHTCCEEEEECT-TCBEEEEEEHHHHHHHHTTTCC----CSSCBH
T ss_pred             ccCCHHH----hhcC-CceEECCCCcHHHHHHHHHHCCCcEEEEECC-CCeEEEEEEHHHHHHHHHhhcc----cCCcCH
Confidence            4568888    7876 8999999999999999999999999999997 7999999999999 88765321    235689


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcC-----CCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKS-----VHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~-----~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      .++|..            ++.++++++++.++++.|.+++     .+++||+|++| +++|+||.+||++++..
T Consensus        76 ~~~m~~------------~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g-~~~Giit~~dll~~~~~  136 (138)
T 2p9m_A           76 GDVMTK------------DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNN-KLVGIISDGDIIRTISK  136 (138)
T ss_dssp             HHHSCS------------SCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTS-BEEEEEEHHHHHHHHHH
T ss_pred             HHHhCC------------CcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCC-eEEEEEEHHHHHHHHHh
Confidence            999984            7899999999999999999999     99999999877 99999999999998865

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.73  E-value=2.2e-17  Score=146.42  Aligned_cols=131  Identities=16%  Similarity=0.198  Sum_probs=112.5

Q ss_pred             ccCcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013373          277 ASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV  355 (444)
Q Consensus       277 ~~~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v  355 (444)
                      ...++++    +|++ .+++++.+++++.+|++.|.+++++++||++++.++++|+||.+|++..+...      ...++
T Consensus        34 ~~~~v~d----iM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~------~~~~v  103 (173)
T 3ocm_A           34 AERSIRS----IMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITE------GRVRR  103 (173)
T ss_dssp             TTSCSTT----TSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHH------SSCCG
T ss_pred             CCCCHHH----hCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcC------Ccchh
Confidence            5678999    7864 36899999999999999999999999999987228999999999999886421      13466


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCccchh
Q 013373          356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDN  432 (444)
Q Consensus       356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~~~~~  432 (444)
                      . ++.             +++++++++++.+++++|.+++++.+||+|++| +++|+||+.||++.++++..+.++.
T Consensus       104 ~-~~~-------------~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g-~lvGiIT~~Dil~~l~~~i~de~~~  165 (173)
T 3ocm_A          104 N-RLR-------------DPIIVHESIGILRLMDTLKRSRGQLVLVADEFG-AIEGLVTPIDVFEAIAGEFPDEDEL  165 (173)
T ss_dssp             G-GSB-------------CCCEECGGGCHHHHHHHHHHSTTCCEEEECTTC-CEEEEECHHHHHHHHHCCCCCTTSC
T ss_pred             H-hcC-------------CCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCC-CEEEEEeHHHHHHHHhCcCCCcccc
Confidence            6 443             789999999999999999999999999999887 9999999999999999877665554

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.72  E-value=6.1e-17  Score=136.57  Aligned_cols=123  Identities=24%  Similarity=0.389  Sum_probs=109.9

Q ss_pred             cCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHH
Q 013373          278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRD  357 (444)
Q Consensus       278 ~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~  357 (444)
                      ..++++    +|.+ ++.++.+++++.+|++.|.+++++.+||+|  +|+++|++|.+|+++.+....    ....++.+
T Consensus         3 ~~~v~~----im~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~Givt~~dl~~~~~~~~----~~~~~v~~   71 (133)
T 2ef7_A            3 EEIVKE----YMKT-QVISVTKDAKLNDIAKVMTEKNIGSVIVVD--GNKPVGIITERDIVKAIGKGK----SLETKAEE   71 (133)
T ss_dssp             CCBGGG----TSBC-SCCEEETTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHTTC----CTTCBGGG
T ss_pred             cccHHH----hccC-CCEEECCCCcHHHHHHHHHhcCCCEEEEEE--CCEEEEEEcHHHHHHHHhcCC----CcccCHHH
Confidence            467888    7886 799999999999999999999999999999  689999999999998876421    12568999


Q ss_pred             HhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          358 FMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       358 ~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      +|..            ++.++++++++.++++.|.+++.+++||+|++| +++|+||..||++.+..
T Consensus        72 ~~~~------------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g-~~~Giit~~dll~~~~~  125 (133)
T 2ef7_A           72 FMTA------------SLITIREDSPITGALALMRQFNIRHLPVVDDKG-NLKGIISIRDITRAIDD  125 (133)
T ss_dssp             TSEE------------CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHHH
T ss_pred             HcCC------------CCEEECCCCCHHHHHHHHHHcCCCEEEEECCCC-eEEEEEEHHHHHHHHHH
Confidence            9975            889999999999999999999999999999887 99999999999999875

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.72  E-value=6.7e-17  Score=137.94  Aligned_cols=123  Identities=17%  Similarity=0.220  Sum_probs=108.2

Q ss_pred             cCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCC--eEEEEEeHHHHHHHhcCCccccccccCcH
Q 013373          278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQK--KIVGNVSIRDIRHLLLKPELFSNFRQLTV  355 (444)
Q Consensus       278 ~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~--~lvGiIt~~Dll~~l~~~~~~~~~~~~~v  355 (444)
                      ..++++    +|.+ ++.++.+++++.++++.|.+++++.+||+|+ ++  +++|+||.+|+++.+....    ....++
T Consensus         4 ~~~v~~----im~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~~~Givt~~dl~~~~~~~~----~~~~~v   73 (141)
T 2rih_A            4 AIRTSE----LLKR-PPVSLPETATIREVATELAKNRVGLAVLTAR-DNPKRPVAVVSERDILRAVAQRL----DLDGPA   73 (141)
T ss_dssp             -CBGGG----GCCS-CCEEEETTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEEEEHHHHHHHHHTTC----CTTSBS
T ss_pred             ceEHHH----HhcC-CCeEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCcceeEEEEEHHHHHHHHhcCC----CCCCCH
Confidence            357888    7886 8999999999999999999999999999997 67  9999999999998875421    125689


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      .++|..            ++.+++++ ++.++++.|.+++.+++||+|++| +++|+||.+||++.+..
T Consensus        74 ~~~m~~------------~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g-~~~Giit~~dll~~~~~  128 (141)
T 2rih_A           74 MPIANS------------PITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNG-ELVGVLSIRDLCFERAI  128 (141)
T ss_dssp             GGGCBC------------CCEEETTS-BHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHSCHHH
T ss_pred             HHHcCC------------CCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCC-cEEEEEEHHHHHHHHHH
Confidence            999984            88999999 999999999999999999999887 99999999999987653

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.72  E-value=1.2e-16  Score=135.56  Aligned_cols=126  Identities=21%  Similarity=0.406  Sum_probs=110.4

Q ss_pred             ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH-HhcCCccccccccCcH
Q 013373          277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH-LLLKPELFSNFRQLTV  355 (444)
Q Consensus       277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~-~l~~~~~~~~~~~~~v  355 (444)
                      ...++++    +|.+ ++.++.+++++.+|++.|.+++++.+||+|+ +|+++|+||.+|+++ ++....    ....++
T Consensus         5 ~~~~v~~----im~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~----~~~~~v   74 (138)
T 2yzi_A            5 MKAPIKV----YMTK-KLLGVKPSTSVQEASRLMMEFDVGSLVVIND-DGNVVGFFTKSDIIRRVIVPGL----PYDIPV   74 (138)
T ss_dssp             TTSBGGG----TCBC-CCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHTTTTCC----CTTSBG
T ss_pred             hhhhHHH----HhcC-CCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHHHHhcCC----cccCCH
Confidence            4568888    7876 8999999999999999999999999999997 799999999999974 443211    235689


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCC
Q 013373          356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP  426 (444)
Q Consensus       356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~  426 (444)
                      .++|..            ++.++++++++.++++.|.+++++++ |+|++| +++|+||..||++++..+.
T Consensus        75 ~~~m~~------------~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g-~~~Giit~~dil~~~~~~~  131 (138)
T 2yzi_A           75 ERIMTR------------NLITANVNTPLGEVLRKMAEHRIKHI-LIEEEG-KIVGIFTLSDLLEASRRRL  131 (138)
T ss_dssp             GGTCBC------------SCCEEETTSBHHHHHHHHHHHTCSEE-EEEETT-EEEEEEEHHHHHHHHHCCS
T ss_pred             HHHhhC------------CCeEECCCCcHHHHHHHHHhcCCCEE-EECCCC-CEEEEEEHHHHHHHHHHHH
Confidence            999984            88999999999999999999999999 999877 9999999999999998643

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.72  E-value=3.4e-17  Score=137.40  Aligned_cols=124  Identities=12%  Similarity=0.123  Sum_probs=109.2

Q ss_pred             ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013373          277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVR  356 (444)
Q Consensus       277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~  356 (444)
                      ...++++    +|.+ ++.++.+++++.+|++.|.+++++.+||+|+  ++++|++|.+|+++.+.....    ...++.
T Consensus         3 ~s~~v~~----~m~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~~Givt~~dl~~~~~~~~~----~~~~v~   71 (128)
T 3gby_A            3 ASVTFSY----LAET-DYPVFTLGGSTADAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRKGWPT----VKEKLG   71 (128)
T ss_dssp             TTCBGGG----GCBC-CSCCEETTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHTTCSSSCC----TTCBCC
T ss_pred             cceEHHH----hhcC-CcceECCCCCHHHHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHHhhCCc----ccCcHH
Confidence            3467888    7886 7999999999999999999999999999994  899999999999987653211    235789


Q ss_pred             HHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          357 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       357 ~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      ++|..            ++.++++++++.++++.|.+++.+++||+|++| +++|+||..||++++..
T Consensus        72 ~~m~~------------~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g-~~~Giit~~dll~~l~~  126 (128)
T 3gby_A           72 EELLE------------TVRSYRPGEQLFDNLISVAAAKCSVVPLADEDG-RYEGVVSRKRILGFLAE  126 (128)
T ss_dssp             GGGCB------------CCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTC-BEEEEEEHHHHHHHHHT
T ss_pred             HHccC------------CCcEECCCCCHHHHHHHHHhCCCcEEEEECCCC-CEEEEEEHHHHHHHHHh
Confidence            99985            889999999999999999999999999999887 99999999999998864

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.72  E-value=3.3e-17  Score=143.93  Aligned_cols=135  Identities=19%  Similarity=0.266  Sum_probs=114.8

Q ss_pred             ccccccCcccccccCCCCC--CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccccc
Q 013373          273 FDIIASQPISDLGLPFMSS--DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNF  350 (444)
Q Consensus       273 ~~~~~~~~v~~l~l~im~~--~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~  350 (444)
                      ...+...++++    +|.+  .+++++.+++++.+|++.|.+++++.+||+|+ +|+++|+||.+|+++.+....  ...
T Consensus        18 ~~~l~~~~v~d----im~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~--~~~   90 (165)
T 3fhm_A           18 YFQGMATFVKD----LLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA-DGVVLGIFTERDLVKAVAGQG--AAS   90 (165)
T ss_dssp             CCSSSSCBHHH----HHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHHG--GGG
T ss_pred             hHhhhhcCHHH----HhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHHhcC--Ccc
Confidence            34456778888    6874  36899999999999999999999999999998 799999999999998875321  123


Q ss_pred             ccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCc
Q 013373          351 RQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPN  428 (444)
Q Consensus       351 ~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~  428 (444)
                      ...++.++|..            +++++++++++.++++.|.+++++++||+|+ | +++|+||..||++++..+...
T Consensus        91 ~~~~v~~~m~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g-~~~Giit~~dil~~~~~~~~~  154 (165)
T 3fhm_A           91 LQQSVSVAMTK------------NVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-G-RLAGIISIGDVVKARIGEIEA  154 (165)
T ss_dssp             GTSBGGGTSBS------------SCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHHHHTTCC---
T ss_pred             ccCCHHHHhcC------------CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-C-EEEEEEEHHHHHHHHHHHHHH
Confidence            46789999984            8899999999999999999999999999999 7 999999999999999875443

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.71  E-value=3.9e-17  Score=142.33  Aligned_cols=127  Identities=15%  Similarity=0.216  Sum_probs=108.8

Q ss_pred             CcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCccc
Q 013373          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (444)
Q Consensus       203 ~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~  282 (444)
                      .+++++|...  .+++++.+++|+.+|+.+|.+++++++||+|++ ++++|++|.+|+++++....  .....+...++.
T Consensus        15 ~~~~~iM~P~--~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~-~~lvGiit~~Di~~~~~~~~--~~~~~~~~~~v~   89 (156)
T 3k6e_A           15 GQEETFLTPA--KNLAVLIDTHNADHATLLLSQMTYTRVPVVTDE-KQFVGTIGLRDIMAYQMEHD--LSQEIMADTDIV   89 (156)
T ss_dssp             TTGGGGEEET--TSSCCEETTSBHHHHHHHHTTSSSSEEEEECC--CBEEEEEEHHHHHHHHHHHT--CCHHHHTTSBGG
T ss_pred             ccHHHhCcch--hHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCC-CcEEEEEEecchhhhhhhcc--cccccccccCHH
Confidence            3578899844  779999999999999999999999999999976 89999999999998876542  122334567899


Q ss_pred             ccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       283 ~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      +    +|++ ++.++++++++.++++.|.++++  +||+|+ +|+++|+||.+|+++.+.
T Consensus        90 ~----im~~-~~~~v~~~~~l~~~~~~m~~~~~--lpVVd~-~g~l~GiiT~~Dil~~~~  141 (156)
T 3k6e_A           90 H----MTKT-DVAVVSPDFTITEVLHKLVDESF--LPVVDA-EGIFQGIITRKSILKAVN  141 (156)
T ss_dssp             G----TCBC-SCCCBCTTCCHHHHHHHTTTSSE--EEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             H----hhcC-CceecccccHHHHHHHHHHHcCC--eEEEec-CCEEEEEEEHHHHHHHHH
Confidence            9    7886 89999999999999999987764  999998 899999999999998875

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.71  E-value=4e-17  Score=137.71  Aligned_cols=125  Identities=18%  Similarity=0.304  Sum_probs=107.4

Q ss_pred             ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH-HhcCCccccccccCcH
Q 013373          277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH-LLLKPELFSNFRQLTV  355 (444)
Q Consensus       277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~-~l~~~~~~~~~~~~~v  355 (444)
                      ...++++    +|.+ ++.++.+++++.++++.|.+++++++||+|+ +++++|++|.+|+++ ++....   .....++
T Consensus         6 ~~~~v~~----im~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~---~~~~~~v   76 (133)
T 1y5h_A            6 TMTTARD----IMNA-GVTCVGEHETLTAAAQYMREHDIGALPICGD-DDRLHGMLTDRDIVIKGLAAGL---DPNTATA   76 (133)
T ss_dssp             --CCHHH----HSEE-TCCCEETTSBHHHHHHHHHHHTCSEEEEECG-GGBEEEEEEHHHHHHTTGGGTC---CTTTSBH
T ss_pred             hhcCHHH----HhcC-CceEeCCCCCHHHHHHHHHHhCCCeEEEECC-CCeEEEEEeHHHHHHHHHhcCC---CccccCH
Confidence            3457788    6876 7899999999999999999999999999987 799999999999984 544221   1235689


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      .++|.+            ++.++++++++.++++.|.+++.+++||+|+ | +++|+||..||++++..
T Consensus        77 ~~~m~~------------~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g-~~~Giit~~dil~~l~~  131 (133)
T 1y5h_A           77 GELARD------------SIYYVDANASIQEMLNVMEEHQVRRVPVISE-H-RLVGIVTEADIARHLPE  131 (133)
T ss_dssp             HHHHTT------------CCCCEETTCCHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHHHTCC-
T ss_pred             HHHhcC------------CCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-C-EEEEEEEHHHHHHHHHh
Confidence            999984            8899999999999999999999999999998 6 99999999999998764

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.71  E-value=5e-17  Score=140.17  Aligned_cols=130  Identities=20%  Similarity=0.255  Sum_probs=111.9

Q ss_pred             ccccCcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcc--ccccc
Q 013373          275 IIASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL--FSNFR  351 (444)
Q Consensus       275 ~~~~~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~--~~~~~  351 (444)
                      .+...++++    +|++ .+++++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+|+++.+.....  .....
T Consensus        11 ~l~~~~v~~----im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~   85 (150)
T 3lqn_A           11 EFQQIFVKD----LMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP-MYKLHGLISTAMILDGILGLERIEFERLE   85 (150)
T ss_dssp             HHHHCBHHH----HSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHTBCSSSBCGGGGG
T ss_pred             hhhcCChhh----cccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECC-CCCEEEEEEHHHHHHHHHhhcccchhHHh
Confidence            345678899    7874 26899999999999999999999999999998 8999999999999998753211  11234


Q ss_pred             cCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          352 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       352 ~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      ..++.++|..            ++.++++++++.++++.|.++++  +||||++| +++|+||..||++++..
T Consensus        86 ~~~v~~~m~~------------~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g-~~~Giit~~dil~~l~~  143 (150)
T 3lqn_A           86 EMKVEQVMKQ------------DIPVLKLEDSFAKALEMTIDHPF--ICAVNEDG-YFEGILTRRAILKLLNK  143 (150)
T ss_dssp             GCBGGGTCBS------------SCCEEETTCBHHHHHHHHHHCSE--EEEECTTC-BEEEEEEHHHHHHHHHH
T ss_pred             cCCHHHHhcC------------CCceeCCCCCHHHHHHHHHhCCE--EEEECCCC-cEEEEEEHHHHHHHHHH
Confidence            6789999984            88999999999999999999986  99999887 99999999999999876

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.71  E-value=1.5e-16  Score=136.95  Aligned_cols=126  Identities=18%  Similarity=0.283  Sum_probs=111.5

Q ss_pred             CCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCccccccc
Q 013373          199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS  278 (444)
Q Consensus       199 ~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~  278 (444)
                      .+...+++++|...  .+++++.+++++.+|++.|.+++++++||+|++.++++|++|..|+++.+...         ..
T Consensus        19 ~l~~~~v~diM~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~---------~~   87 (148)
T 3lv9_A           19 EFEEKKIREIMVPR--TDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINE---------NK   87 (148)
T ss_dssp             GGGTCBGGGTSEET--TTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHH---------SC
T ss_pred             ccCCCCHHHccccH--HHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcC---------CC
Confidence            45678899999832  37999999999999999999999999999997536999999999999887643         14


Q ss_pred             CcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       279 ~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      .++++    +| . ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+||..|+++.+.
T Consensus        88 ~~v~~----~m-~-~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dil~~l~  144 (148)
T 3lv9_A           88 IELEE----IL-R-DIIYISENLTIDKALERIRKEKLQLAIVVDE-YGGTSGVVTIEDILEEIV  144 (148)
T ss_dssp             CCGGG----TC-B-CCEEEETTSBHHHHHHHHHHHTCSEEEEECT-TSSEEEEEEHHHHHHHHH
T ss_pred             ccHHH----hc-C-CCeEECCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHh
Confidence            68889    78 5 7899999999999999999999999999997 799999999999998864

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.70  E-value=1.2e-16  Score=133.03  Aligned_cols=121  Identities=21%  Similarity=0.346  Sum_probs=106.4

Q ss_pred             cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHh
Q 013373          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFM  359 (444)
Q Consensus       280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m  359 (444)
                      ++++    +|.+ ++.++.+++++.+|++.|.+++.+.+||+|  +|+++|++|.+|+++.+....   .....++.++|
T Consensus         2 ~v~~----~m~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~G~it~~dl~~~~~~~~---~~~~~~v~~~m   71 (125)
T 1pbj_A            2 RVED----VMVT-DVDTIDITASLEDVLRNYVENAKGSSVVVK--EGVRVGIVTTWDVLEAIAEGD---DLAEVKVWEVM   71 (125)
T ss_dssp             CHHH----HCBC-SCCEEETTCBHHHHHHHHHHHCCCEEEEEE--TTEEEEEEEHHHHHHHHHHTC---CTTTSBHHHHC
T ss_pred             CHHH----hcCC-CceEECCCCcHHHHHHHHHHcCCCEEEEEe--CCeeEEEEeHHHHHHHHhcCC---cccccCHHHHc
Confidence            4556    6776 899999999999999999999999999999  699999999999998765321   12366899999


Q ss_pred             cccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          360 NAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      .+            ++.++++++++.++++.|.+++.+++||+|+ | +++|+||.+||++++..
T Consensus        72 ~~------------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~-~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           72 ER------------DLVTISPRATIKEAAEKMVKNVVWRLLVEED-D-EIIGVISATDILRAKMA  122 (125)
T ss_dssp             BC------------GGGEECTTSCHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHHHHHC-
T ss_pred             CC------------CCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-C-EEEEEEEHHHHHHHHHh
Confidence            84            7899999999999999999999999999998 6 99999999999998865

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.70  E-value=1e-16  Score=138.07  Aligned_cols=130  Identities=25%  Similarity=0.375  Sum_probs=107.9

Q ss_pred             cCcccccccCCCCCC-CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCc----------c
Q 013373          278 SQPISDLGLPFMSSD-EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE----------L  346 (444)
Q Consensus       278 ~~~v~~l~l~im~~~-~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~----------~  346 (444)
                      ..++++    +|.+. +++++.+++++.+|++.|.+++++++||+|+ +++++|+||.+|+++++....          .
T Consensus         4 ~~~v~~----im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~   78 (152)
T 4gqw_A            4 VYTVGE----FMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDE-DWKLVGLVSDYDLLALDSGDSTWKTFNAVQKL   78 (152)
T ss_dssp             CSBGGG----TSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECT-TCBEEEEEEHHHHTTCC----CCHHHHHHHTC
T ss_pred             eEEhhh----ccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeC-CCeEEEEEEHHHHHHhhcccCcccchHHHHHH
Confidence            357788    67642 5899999999999999999999999999998 799999999999986533210          1


Q ss_pred             ccccccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013373          347 FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  425 (444)
Q Consensus       347 ~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e  425 (444)
                      .......++.++|.+            +++++++++++.++++.|.+++++++||+|++| +++|+||.+||++++...
T Consensus        79 ~~~~~~~~v~~~m~~------------~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g-~~~Giit~~dil~~~~~~  144 (152)
T 4gqw_A           79 LSKTNGKLVGDLMTP------------APLVVEEKTNLEDAAKILLETKYRRLPVVDSDG-KLVGIITRGNVVRAALQI  144 (152)
T ss_dssp             -----CCBHHHHSEE------------SCCCEESSSBHHHHHHHHHHSSCCEEEEECTTS-BEEEEEEHHHHHHHHHC-
T ss_pred             HHHhccccHHHhcCC------------CceEECCCCcHHHHHHHHHHCCCCEEEEECCCC-cEEEEEEHHHHHHHHHhc
Confidence            112235689999985            788999999999999999999999999999887 999999999999999863

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.70  E-value=3.8e-17  Score=142.25  Aligned_cols=119  Identities=16%  Similarity=0.352  Sum_probs=105.9

Q ss_pred             cccCcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCC-CeEEEEEeHHHHHHHhcCCccccccccC
Q 013373          276 IASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFSNFRQL  353 (444)
Q Consensus       276 ~~~~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~-~~lvGiIt~~Dll~~l~~~~~~~~~~~~  353 (444)
                      +...++++    +|++ .+++++++++++.+|++.|.+++++++||+++ + ++++|+||.+|+++.+...      ...
T Consensus        35 l~~~~v~d----iM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~-~~~~lvGivt~~dl~~~~~~~------~~~  103 (156)
T 3oi8_A           35 FSDLEVRD----AMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGE-DKDEVLGILHAKDLLKYMFNP------EQF  103 (156)
T ss_dssp             HTTCBGGG----TCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS-STTCEEEEEEGGGGGGGSSCG------GGC
T ss_pred             cCCCCHhh----eeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC-CCCcEEEEEEHHHHHHHHHcC------Ccc
Confidence            35678999    7875 26899999999999999999999999999997 5 5999999999998876431      356


Q ss_pred             cHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHH
Q 013373          354 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVI  419 (444)
Q Consensus       354 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl  419 (444)
                      ++.++|+             +++++++++++.++++.|.+++.+++||+|++| +++|+||+.||+
T Consensus       104 ~v~~im~-------------~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g-~~~Givt~~Dil  155 (156)
T 3oi8_A          104 HLKSILR-------------PAVFVPEGKSLTALLKEFREQRNHMAIVIDEYG-GTSGLVTFEDII  155 (156)
T ss_dssp             CHHHHCB-------------CCCEEETTSBHHHHHHHHHHTTCCEEEEECTTS-SEEEEEEHHHHC
T ss_pred             cHHHHcC-------------CCEEECCCCCHHHHHHHHHhcCCeEEEEECCCC-CEEEEEEHHHhc
Confidence            8999996             688999999999999999999999999999987 999999999986

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.70  E-value=1.1e-16  Score=145.85  Aligned_cols=133  Identities=14%  Similarity=0.175  Sum_probs=111.0

Q ss_pred             ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHc---CCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccC
Q 013373          277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDN---NIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQL  353 (444)
Q Consensus       277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~---~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~  353 (444)
                      ...++++    +|++ +++++.++.++.+|++.|.++   +++.+||+|+ +++++|+||.+|++..         ....
T Consensus        52 ~~~~v~~----iM~~-~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~-~~~lvGivt~~dll~~---------~~~~  116 (205)
T 3kxr_A           52 SENEIGR----YTDH-QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDE-ADKYLGTVRRYDIFKH---------EPHE  116 (205)
T ss_dssp             CTTCGGG----GCBC-CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECT-TCBEEEEEEHHHHTTS---------CTTS
T ss_pred             CcchHHh----hccC-ceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcC-CCeEEEEEEHHHHHhC---------CCcc
Confidence            4568889    7987 899999999999999999997   7899999998 8999999999998643         1255


Q ss_pred             cHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCccchhh
Q 013373          354 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDNY  433 (444)
Q Consensus       354 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~~~~~~  433 (444)
                      ++.++|..            +++++++++++.++++.|.+++++.+||||++| +++|+||..||++.+..+....+.++
T Consensus       117 ~v~~im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g-~lvGiIT~~Dil~~i~~e~~ed~~~~  183 (205)
T 3kxr_A          117 PLISLLSE------------DSRALTANTTLLDAAEAIEHSREIELPVIDDAG-ELIGRVTLRAATALVREHYEAQLMAT  183 (205)
T ss_dssp             BGGGGCCS------------SCCCEETTSCHHHHHHHHHTSSCSEEEEECTTS-BEEEEEEHHHHHHHHHHHHC------
T ss_pred             hHHHHhcC------------CCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCC-eEEEEEEHHHHHHHHHHHHHHHHHHh
Confidence            89999984            889999999999999999999999999999988 99999999999999987666666665


Q ss_pred             hhhh
Q 013373          434 FGFS  437 (444)
Q Consensus       434 ~~~~  437 (444)
                      .+..
T Consensus       184 ~g~~  187 (205)
T 3kxr_A          184 AGMD  187 (205)
T ss_dssp             ----
T ss_pred             cCCC
Confidence            5543

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.70  E-value=9.6e-17  Score=147.22  Aligned_cols=163  Identities=13%  Similarity=0.172  Sum_probs=105.9

Q ss_pred             CCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcc
Q 013373          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI  281 (444)
Q Consensus       202 ~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v  281 (444)
                      ..+++++|.    .+++++.+++++.+|+++|.+++++++||+|++ ++++|++|..|+.+.+.            ..++
T Consensus        12 ~~~~~~~~~----~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~-~~l~Givt~~dl~~~~~------------~~~v   74 (213)
T 1vr9_A           12 HMKVKKWVT----QDFPMVEESATVRECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDLDL------------DSSV   74 (213)
T ss_dssp             -CBGGGGCB----SCSCEEETTCBHHHHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTSCT------------TSBS
T ss_pred             ccCHHHhhc----CCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCC-CEEEEEEEHHHHHhhcC------------CCcH
Confidence            456778887    779999999999999999999999999999976 89999999999876432            3578


Q ss_pred             cccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcc
Q 013373          282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNA  361 (444)
Q Consensus       282 ~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~  361 (444)
                      ++    +|++ +++++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|+++.+....        .+.+.+..
T Consensus        75 ~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~Dil~~~~~~~--------~~~~~~~~  140 (213)
T 1vr9_A           75 FN----KVSL-PDFFVHEEDNITHALLLFLEHQEPYLPVVDE-EMRLKGAVSLHDFLEALIEAL--------AMDVPGIR  140 (213)
T ss_dssp             GG----GCBC-TTCCEETTSBHHHHHHHHHHCCCSEEEEECT-TCBEEEEEEHHHHHHHHHHSC--------C-------
T ss_pred             HH----HccC-CCEEECCCCcHHHHHHHHHHhCCCEEEEEcC-CCEEEEEEEHHHHHHHHHHHh--------cCCCCcEE
Confidence            88    7886 8999999999999999999999999999997 799999999999998765211        12222221


Q ss_pred             cCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCC
Q 013373          362 VVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE  406 (444)
Q Consensus       362 ~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~  406 (444)
                      .           .+.+.....++.++.+.|.+++++.++|++.++
T Consensus       141 l-----------~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~~~  174 (213)
T 1vr9_A          141 F-----------SVLLEDKPGELRKVVDALALSNINILSVITTRS  174 (213)
T ss_dssp             ---------------------------------------------
T ss_pred             E-----------EEEeCCCCccHHHHHHHHHHCCCcEEEEEEEec
Confidence            0           111223444599999999999999999986654

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.70  E-value=1.6e-16  Score=138.75  Aligned_cols=127  Identities=21%  Similarity=0.214  Sum_probs=108.8

Q ss_pred             cCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCc-----ccccccc
Q 013373          278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE-----LFSNFRQ  352 (444)
Q Consensus       278 ~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~-----~~~~~~~  352 (444)
                      ..++++    +|++ +++++.+++++.+|++.|.+++++.+||+|+ +|+++|+||.+|+++.+....     .......
T Consensus         4 ~~~v~d----im~~-~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~   77 (160)
T 2o16_A            4 MIKVED----MMTR-HPHTLLRTHTLNDAKHLMEALDIRHVPIVDA-NKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFE   77 (160)
T ss_dssp             CCBGGG----TSEE-SCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHHHCC---------CC
T ss_pred             cCcHHH----HhcC-CCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHHHHHhhcccccccchhcc
Confidence            457888    7876 8999999999999999999999999999997 799999999999988764210     0011235


Q ss_pred             CcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          353 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       353 ~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      .++.++|..            +++++++++++.++++.|.+++++++||+|+ | +++|+||..||++++..
T Consensus        78 ~~v~~im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g-~lvGiit~~dil~~~~~  135 (160)
T 2o16_A           78 TPLFEVMHT------------DVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-D-VLVGIITDSDFVTIAIN  135 (160)
T ss_dssp             CBHHHHSCS------------CEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-T-EEEEEECHHHHHHHHHH
T ss_pred             cCHHHHhcC------------CCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-C-EEEEEEEHHHHHHHHHH
Confidence            689999984            8899999999999999999999999999998 6 99999999999998763

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.69  E-value=2.7e-16  Score=130.44  Aligned_cols=119  Identities=25%  Similarity=0.430  Sum_probs=107.4

Q ss_pred             cHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccc
Q 013373          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  283 (444)
Q Consensus       204 ~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~  283 (444)
                      +++++|.    .+++++.+++++.+|++.|.+++++++||+|++ ++++|++|..|+.+.+...          ..++.+
T Consensus         2 ~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~----------~~~v~~   66 (122)
T 3kpb_A            2 LVKDILS----KPPITAHSNISIMEAAKILIKHNINHLPIVDEH-GKLVGIITSWDIAKALAQN----------KKTIEE   66 (122)
T ss_dssp             BHHHHCC----SCCCCEETTSBHHHHHHHHHHHTCSCEEEECTT-SBEEEEECHHHHHHHHHTT----------CCBGGG
T ss_pred             chHHhhC----CCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHHHHHHhc----------ccCHHH
Confidence            6889998    679999999999999999999999999999976 8999999999999987653          237888


Q ss_pred             cccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373          284 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (444)
Q Consensus       284 l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~  343 (444)
                          +|.+ ++.++.+++++.++++.|.+++.+.+||+|+ +|+++|+||.+|+++++..
T Consensus        67 ----~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~g~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           67 ----IMTR-NVITAHEDEPVDHVAIKMSKYNISGVPVVDD-YRRVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             ----TSBS-SCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHC-
T ss_pred             ----HhcC-CCeEECCCCCHHHHHHHHHHhCCCeEEEECC-CCCEEEEEeHHHHHHHhhc
Confidence                7876 8899999999999999999999999999997 7999999999999998753

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.69  E-value=1.7e-16  Score=133.67  Aligned_cols=125  Identities=13%  Similarity=0.143  Sum_probs=107.4

Q ss_pred             CcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCccc
Q 013373          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (444)
Q Consensus       203 ~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~  282 (444)
                      .+++++|...  .+++++.+++++.+|++.|.+++++++||++++.++++|++|..|+++.+.....      +...++.
T Consensus         2 ~~v~~iM~~~--~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~------~~~~~v~   73 (130)
T 3hf7_A            2 VSVNDIMVPR--NEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE------FTKEIML   73 (130)
T ss_dssp             CBHHHHSEEG--GGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSC------CCHHHHH
T ss_pred             cCHHHhCccH--HHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCc------cchhhHH
Confidence            4689999632  4589999999999999999999999999997644799999999999998865421      1235678


Q ss_pred             ccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       283 ~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      +    +| . ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|+++.+.
T Consensus        74 ~----~m-~-~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~lvGiit~~Dil~~l~  126 (130)
T 3hf7_A           74 R----AA-D-EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE-YGDIQGLVTVEDILEEIV  126 (130)
T ss_dssp             H----HS-B-CCCEEETTCBHHHHHHHHHHHCCCEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred             H----hc-c-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEcC-CCCEEEEeeHHHHHHHHh
Confidence            8    67 3 6889999999999999999999999999998 899999999999998865

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.69  E-value=2.8e-16  Score=137.03  Aligned_cols=129  Identities=19%  Similarity=0.321  Sum_probs=109.9

Q ss_pred             cccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013373          276 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV  355 (444)
Q Consensus       276 ~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v  355 (444)
                      +...++++    +|++ + +++.+++++.+|++.|.+++++++||+|+ +++++|+||.+|+++.+.....   ....++
T Consensus        14 l~~~~v~~----im~~-~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~---~~~~~v   83 (159)
T 3fv6_A           14 LKKLQVKD----FQSI-P-VVIHENVSVYDAICTMFLEDVGTLFVVDR-DAVLVGVLSRKDLLRASIGQQE---LTSVPV   83 (159)
T ss_dssp             HTTCBGGG----SCBC-C-CEEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHTSCSC---TTTCBG
T ss_pred             HhhCCHHH----HcCC-C-EEECCCCcHHHHHHHHHHCCCCEEEEEcC-CCcEEEEEeHHHHHHHhhccCc---ccCcCH
Confidence            34568999    7875 4 59999999999999999999999999998 7999999999999987643221   245689


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCC--eEEEEEeHHHHHHHhHc
Q 013373          356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEA--EVVGVITLRDVISCFIF  424 (444)
Q Consensus       356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~--~lvGvIT~~DIl~~l~~  424 (444)
                      .++|...          .+++++++++++.++++.|.+++++++||+|++|+  +++|+||..||++++..
T Consensus        84 ~~~m~~~----------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~  144 (159)
T 3fv6_A           84 HIIMTRM----------PNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVS  144 (159)
T ss_dssp             GGTSEET----------TSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHH
T ss_pred             HHHHcCC----------CCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHH
Confidence            9999731          26789999999999999999999999999997521  89999999999999874

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.69  E-value=3.6e-16  Score=134.79  Aligned_cols=121  Identities=17%  Similarity=0.364  Sum_probs=106.7

Q ss_pred             cCcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013373          278 SQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVR  356 (444)
Q Consensus       278 ~~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~  356 (444)
                      ..++++    +|.+ ++++++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|+++.+....   .....++.
T Consensus        27 ~~~v~d----im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~---~~~~~~v~   98 (149)
T 3k2v_A           27 LLRVND----IMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDD-DMNIIGIFTDGDLRRVFDTGV---DMRDASIA   98 (149)
T ss_dssp             TSBGGG----TSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECT-TCBEEEEEEHHHHHHHHCSSS---CCTTCBHH
T ss_pred             ccCHHH----HhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECC-CCcEEEEecHHHHHHHHhcCC---CcccCcHH
Confidence            458899    6763 16889999999999999999999999999998 799999999999999876422   13467899


Q ss_pred             HHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          357 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       357 ~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                      ++|..            ++.++++++++.++++.|.+++++++||+|+ + +++|+||..||++
T Consensus        99 ~~m~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~-~~~Giit~~dil~  148 (149)
T 3k2v_A           99 DVMTR------------GGIRIRPGTLAVDALNLMQSRHITCVLVADG-D-HLLGVVHMHDLLR  148 (149)
T ss_dssp             HHSEE------------SCCEECTTCBHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHTC
T ss_pred             HHcCC------------CCeEECCCCCHHHHHHHHHHcCCCEEEEecC-C-EEEEEEEHHHhhc
Confidence            99985            7899999999999999999999999999997 3 9999999999975

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.68  E-value=4.9e-16  Score=135.16  Aligned_cols=128  Identities=14%  Similarity=0.284  Sum_probs=109.7

Q ss_pred             ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCe-EeEEeCCCCeEEEEEeHHHHHHHhcC--------Ccc-
Q 013373          277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGG-IPVVEGQQKKIVGNVSIRDIRHLLLK--------PEL-  346 (444)
Q Consensus       277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~-lpVvd~~~~~lvGiIt~~Dll~~l~~--------~~~-  346 (444)
                      ...++++    +|++ ++.++.+++++.+|++.|.+++++. +||+|+ + +++|+||.+|+++.+..        ... 
T Consensus        14 ~~~~v~~----im~~-~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~-~-~~vGivt~~dl~~~~~~~~~~~~~~~~~~   86 (157)
T 1o50_A           14 KVKDVCK----LISL-KPTVVEEDTPIEEIVDRILEDPVTRTVYVARD-N-KLVGMIPVMHLLKVSGFHFFGFIPKEELI   86 (157)
T ss_dssp             BHHHHTT----SSCC-CCEEECTTCBHHHHHHHHHHSTTCCEEEEEET-T-EEEEEEEHHHHHHHHHHHHHCCCC-----
T ss_pred             ccccHhh----cccC-CCceECCCCCHHHHHHHHHhCCCCccEEEEEC-C-EEEEEEEHHHHHHHHhhhHHhhhccHHHH
Confidence            5567888    7886 8999999999999999999999999 999997 6 99999999999987431        000 


Q ss_pred             ---ccccccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhH
Q 013373          347 ---FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI  423 (444)
Q Consensus       347 ---~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~  423 (444)
                         .......++.++|.            . ++++++++++.++++.|.+++++++||+|++| +++|+||..||++.+.
T Consensus        87 ~~~~~~~~~~~v~~im~------------~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~~vGiit~~dll~~l~  152 (157)
T 1o50_A           87 RSSMKRLIAKNASEIML------------D-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKG-EIVGDLNSLEILLALW  152 (157)
T ss_dssp             --CCCCCSSCBHHHHCB------------C-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHH
T ss_pred             HHHHHHHcCCcHHHHcC------------C-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCC-EEEEEEEHHHHHHHHH
Confidence               01234668999998            4 88999999999999999999999999999877 9999999999999987


Q ss_pred             cC
Q 013373          424 FE  425 (444)
Q Consensus       424 ~e  425 (444)
                      .+
T Consensus       153 ~~  154 (157)
T 1o50_A          153 KG  154 (157)
T ss_dssp             HS
T ss_pred             Hh
Confidence            53

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.68  E-value=3.6e-16  Score=135.74  Aligned_cols=132  Identities=17%  Similarity=0.287  Sum_probs=110.8

Q ss_pred             cccCcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccc--ccccc
Q 013373          276 IASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF--SNFRQ  352 (444)
Q Consensus       276 ~~~~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~--~~~~~  352 (444)
                      +...++++    +|.+ ++++++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+|+++.+.....+  .....
T Consensus         8 l~~~~v~~----im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~~   82 (157)
T 2emq_A            8 FMQMTVKP----FLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDT-SYKLHGLISMTMMMDAILGLERIEFERLET   82 (157)
T ss_dssp             --CCBSTT----TCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECT-TCCEEEEEEHHHHHHHSBCSSSBCGGGGGT
T ss_pred             HhhCcHHh----hccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcC-CCCEEEEeeHHHHHHHHhcccccchHHhcC
Confidence            35678888    7863 26889999999999999999999999999997 79999999999999887542111  12345


Q ss_pred             CcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCC
Q 013373          353 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPP  427 (444)
Q Consensus       353 ~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~  427 (444)
                      .++.++|..            ++.++++++++.++++.|.++++  +||+|++| +++|+||.+||++++.....
T Consensus        83 ~~v~~~m~~------------~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g-~~~Giit~~dil~~~~~~~~  142 (157)
T 2emq_A           83 MKVEEVMNR------------NIPRLRLDDSLMKAVGLIVNHPF--VCVENDDG-YFAGIFTRREVLKQLNKQLH  142 (157)
T ss_dssp             CBGGGTCBC------------CCCEEETTSBHHHHHHHHHHSSE--EEEECSSS-SEEEEEEHHHHHHHHHHTTC
T ss_pred             CcHHHHhCC------------CCceecCCCcHHHHHHHHhhCCE--EEEEcCCC-eEEEEEEHHHHHHHHHHHhh
Confidence            689999984            88999999999999999999987  99999887 99999999999999986443

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.68  E-value=3.6e-16  Score=138.32  Aligned_cols=128  Identities=11%  Similarity=0.133  Sum_probs=109.0

Q ss_pred             CCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccc
Q 013373          198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIA  277 (444)
Q Consensus       198 ~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~  277 (444)
                      ..+...+++++|...  .+++++.+++++.+|++.|.+++++++||+|.+.++++|+||..|+++.+...         .
T Consensus        37 ~~l~~~~v~diM~~~--~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~---------~  105 (172)
T 3lhh_A           37 FRLDERTISSLMVPR--SDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAG---------E  105 (172)
T ss_dssp             ------CTTTTSEEG--GGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTT---------C
T ss_pred             hccCCCCHHHhCccH--HHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhc---------C
Confidence            346678899999833  45889999999999999999999999999987546999999999999987654         2


Q ss_pred             cCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373          278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (444)
Q Consensus       278 ~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~  343 (444)
                      ..++++    +| + +++++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|+++.+..
T Consensus       106 ~~~v~~----im-~-~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~g~lvGiit~~Dil~~l~~  164 (172)
T 3lhh_A          106 RLELVD----LV-K-NCNFVPNSLSGMELLEHFRTTGSQMVFVVDE-YGDLKGLVTLQDMMDALTG  164 (172)
T ss_dssp             CCCGGG----GC-B-CCEEEETTCCHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHT
T ss_pred             cccHHH----Hh-c-CCeEeCCCCCHHHHHHHHHHcCCeEEEEEeC-CCCEEEEeeHHHHHHHHhC
Confidence            468899    78 5 7999999999999999999999999999997 7999999999999988763

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.68  E-value=1.2e-16  Score=134.41  Aligned_cols=126  Identities=12%  Similarity=0.183  Sum_probs=107.5

Q ss_pred             CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013373          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  279 (444)
Q Consensus       200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~  279 (444)
                      +...+++++|...  .+++++.+++++.+|++.|.+++++++||+|++.++++|++|..|+++.+....        ...
T Consensus         3 l~~~~v~~iM~~~--~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~--------~~~   72 (130)
T 3i8n_A            3 AQDVPVTQVMTPR--PVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGS--------GQK   72 (130)
T ss_dssp             ----CCTTTSCCB--CCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTT--------TTS
T ss_pred             cCcCCHhhCCCcH--HHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCC--------CcC
Confidence            3466789999833  457899999999999999999999999999975479999999999999876542        356


Q ss_pred             cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      ++++    +|.  ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|+++.+.
T Consensus        73 ~v~~----~m~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~~vGivt~~dil~~l~  128 (130)
T 3i8n_A           73 QLGA----VMR--PIQVVLNNTALPKVFDQMMTHRLQLALVVDE-YGTVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             BHHH----HSE--ECCEEETTSCHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred             CHHH----Hhc--CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcC-CCCEEEEEEHHHHHHHHc
Confidence            7888    674  5889999999999999999999999999997 899999999999998764

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.68  E-value=3.4e-16  Score=132.42  Aligned_cols=123  Identities=19%  Similarity=0.381  Sum_probs=106.0

Q ss_pred             cccccccCCCC---CCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013373          280 PISDLGLPFMS---SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVR  356 (444)
Q Consensus       280 ~v~~l~l~im~---~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~  356 (444)
                      ++++    +|+   . ++.++.+++++.+|++.|.+++++++||+|  +++++|++|.+|+++.+.....  .....++.
T Consensus         7 ~v~~----im~~~~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~Givt~~dl~~~~~~~~~--~~~~~~v~   77 (135)
T 2rc3_A            7 TVKH----LLQEKGH-TVVAIGPDDSVFNAMQKMAADNIGALLVMK--DEKLVGILTERDFSRKSYLLDK--PVKDTQVK   77 (135)
T ss_dssp             BHHH----HHHHHCC-CCCEECTTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHGGGSSS--CGGGSBGG
T ss_pred             eHHH----HHhcCCC-CcEEECCCCcHHHHHHHHHhcCCCEEEEEE--CCEEEEEEehHHHHHHHHHcCC--CcccCCHH
Confidence            6777    676   5 789999999999999999999999999998  6899999999999864322111  12466899


Q ss_pred             HHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013373          357 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  425 (444)
Q Consensus       357 ~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e  425 (444)
                      ++|..            ++.++++++++.++++.|.+++++++||+| +| +++|+||.+||++++..+
T Consensus        78 ~~m~~------------~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g-~~~Giit~~dll~~~~~~  132 (135)
T 2rc3_A           78 EIMTR------------QVAYVDLNNTNEDCMALITEMRVRHLPVLD-DG-KVIGLLSIGDLVKDAISQ  132 (135)
T ss_dssp             GTSBC------------SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TT-EEEEEEEHHHHHHHHHC-
T ss_pred             HhccC------------CCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CC-EEEEEEEHHHHHHHHHhc
Confidence            99984            889999999999999999999999999999 56 999999999999998763

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.68  E-value=4.1e-16  Score=131.07  Aligned_cols=123  Identities=11%  Similarity=0.165  Sum_probs=106.2

Q ss_pred             CCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCc
Q 013373          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP  280 (444)
Q Consensus       201 ~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~  280 (444)
                      ...+++++|...  .+++++.+++++.+|++.|.+++++++||+|++.++++|++|..|+++.+..          ...+
T Consensus         3 ~~~~v~diM~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~----------~~~~   70 (129)
T 3jtf_A            3 AERTVADIMVPR--SRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLE----------PALD   70 (129)
T ss_dssp             -CCBHHHHCEEG--GGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTC----------TTSC
T ss_pred             CCCCHHHhCccH--HHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhcc----------CCcC
Confidence            356799999833  4588999999999999999999999999999744799999999999887642          2457


Q ss_pred             ccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       281 v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      +++    +|.  ++.++.+++++.++++.|.+++.+.+||+|+ +|+++|+||.+|+++.+.
T Consensus        71 v~~----~m~--~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~-~g~~~Giit~~Dil~~l~  125 (129)
T 3jtf_A           71 IRS----LVR--PAVFIPEVKRLNVLLREFRASRNHLAIVIDE-HGGISGLVTMEDVLEQIV  125 (129)
T ss_dssp             GGG----GCB--CCCEEETTCBHHHHHHHHHTSSCCEEEEECC--CCEEEEEEHHHHHHHHH
T ss_pred             HHH----HhC--CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHh
Confidence            888    674  4789999999999999999999999999997 799999999999998764

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.67  E-value=6.5e-16  Score=130.23  Aligned_cols=122  Identities=24%  Similarity=0.413  Sum_probs=109.0

Q ss_pred             CCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcc
Q 013373          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI  281 (444)
Q Consensus       202 ~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v  281 (444)
                      ..+++++|.    .+++++.+++++.+|++.|.+++++++||+| + ++++|++|..|+.+.+.....       ...++
T Consensus         3 ~~~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~~-------~~~~v   69 (133)
T 2ef7_A            3 EEIVKEYMK----TQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-G-NKPVGIITERDIVKAIGKGKS-------LETKA   69 (133)
T ss_dssp             CCBGGGTSB----CSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHTTCC-------TTCBG
T ss_pred             cccHHHhcc----CCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-CEEEEEEcHHHHHHHHhcCCC-------cccCH
Confidence            567899998    6689999999999999999999999999999 5 899999999999988765421       34688


Q ss_pred             cccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       282 ~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      .+    +|.+ ++.++.+++++.++++.|.+++.+.+||+|+ +|+++|+||.+|+++.+.
T Consensus        70 ~~----~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~  124 (133)
T 2ef7_A           70 EE----FMTA-SLITIREDSPITGALALMRQFNIRHLPVVDD-KGNLKGIISIRDITRAID  124 (133)
T ss_dssp             GG----TSEE-CCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred             HH----HcCC-CCEEECCCCCHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHH
Confidence            88    7876 7899999999999999999999999999997 799999999999998865

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.67  E-value=2.7e-16  Score=131.79  Aligned_cols=124  Identities=12%  Similarity=0.237  Sum_probs=106.3

Q ss_pred             CCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcc
Q 013373          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI  281 (444)
Q Consensus       202 ~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v  281 (444)
                      ..+++++|...  .+++++.+++++.+|++.|.+++++++||+|++.++++|++|..|+++.+....        ...++
T Consensus         2 ~~~v~diM~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~--------~~~~v   71 (127)
T 3nqr_A            2 DQRVRDIMIPR--SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA--------EAFSM   71 (127)
T ss_dssp             -CBHHHHSEEG--GGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTC--------CCCCH
T ss_pred             CcCHHHhcccH--HHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccC--------CCCCH
Confidence            35789999832  348899999999999999999999999999975469999999999998775431        35678


Q ss_pred             cccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       282 ~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      ++    +|.  ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|+++.+.
T Consensus        72 ~~----~m~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~Giit~~dll~~l~  125 (127)
T 3nqr_A           72 DK----VLR--TAVVVPESKRVDRMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIV  125 (127)
T ss_dssp             HH----HCB--CCCEEETTCBHHHHHHHHHHTTCCEEEEECT-TSCEEEEEEHHHHHHHC-
T ss_pred             HH----HcC--CCeEECCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHh
Confidence            88    674  4789999999999999999999999999998 899999999999998754

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.67  E-value=4.6e-16  Score=135.23  Aligned_cols=128  Identities=18%  Similarity=0.350  Sum_probs=109.0

Q ss_pred             CcccccccCCCCC-----CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccC
Q 013373          279 QPISDLGLPFMSS-----DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQL  353 (444)
Q Consensus       279 ~~v~~l~l~im~~-----~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~  353 (444)
                      .++++    +|.+     .++.++.+++++.+|++.|.+++++.+||++  +++++|+||.+|+++.+.....  .....
T Consensus         7 ~~v~d----im~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~--~~~~~   78 (157)
T 4fry_A            7 TTVAQ----ILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD--GDDIAGIVTERDYARKVVLQER--SSKAT   78 (157)
T ss_dssp             CBHHH----HHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES--SSSEEEEEEHHHHHHHSGGGTC--CSSSC
T ss_pred             HHHHH----HHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee--CCEEEEEEEHHHHHHHHHhccC--Ccccc
Confidence            35667    5652     2579999999999999999999999999965  7999999999999988653221  12467


Q ss_pred             cHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCc
Q 013373          354 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPN  428 (444)
Q Consensus       354 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~  428 (444)
                      ++.++|.+            ++.++++++++.+++++|.+++++++||+| +| +++|+||..||++++..+...
T Consensus        79 ~v~~~m~~------------~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g-~~~Giit~~dil~~l~~~~~~  139 (157)
T 4fry_A           79 RVEEIMTA------------KVRYVEPSQSTDECMALMTEHRMRHLPVLD-GG-KLIGLISIGDLVKSVIADQQF  139 (157)
T ss_dssp             BHHHHSBS------------SCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TT-EEEEEEEHHHHHHHHHTTCCC
T ss_pred             CHHHHcCC------------CCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CC-EEEEEEEHHHHHHHHHHHHHh
Confidence            89999985            789999999999999999999999999999 56 999999999999999976544

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.67  E-value=3.1e-16  Score=133.14  Aligned_cols=125  Identities=11%  Similarity=0.179  Sum_probs=107.3

Q ss_pred             CCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcc
Q 013373          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI  281 (444)
Q Consensus       202 ~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v  281 (444)
                      ..+++++|...  .+++++.+++++.+|+++|.+++++++||+|++.++++|++|..|+++.+....       ....++
T Consensus         2 ~~~v~~iM~~~--~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~-------~~~~~v   72 (136)
T 3lfr_A            2 DLQVRDIMVPR--SQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKAD-------GDSDDV   72 (136)
T ss_dssp             -CBHHHHSEEG--GGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSS-------GGGCCG
T ss_pred             CCChHhccccH--HHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhcc-------CCCcCH
Confidence            35789999833  458999999999999999999999999999975369999999999998775321       145688


Q ss_pred             cccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       282 ~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      ++    +|+  ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|+++.+.
T Consensus        73 ~~----~m~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~lvGiit~~Dil~~l~  126 (136)
T 3lfr_A           73 KK----LLR--PATFVPESKRLNVLLREFRANHNHMAIVIDE-YGGVAGLVTIEDVLEQIV  126 (136)
T ss_dssp             GG----TCB--CCCEEETTCBHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHTTC-
T ss_pred             HH----HcC--CCeEECCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHh
Confidence            89    785  4899999999999999999999999999998 899999999999998764

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.67  E-value=8.7e-16  Score=134.11  Aligned_cols=135  Identities=16%  Similarity=0.233  Sum_probs=108.6

Q ss_pred             ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeC-CCCeEEEEEeHHHHHHHhcCCcc-ccccccCc
Q 013373          277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEG-QQKKIVGNVSIRDIRHLLLKPEL-FSNFRQLT  354 (444)
Q Consensus       277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~-~~~~lvGiIt~~Dll~~l~~~~~-~~~~~~~~  354 (444)
                      ...++++    +|.+ +++++.+++++.+|++.|.+++++++||+|+ ++++++|+||.+|+++.+..... .......+
T Consensus        11 ~~~~v~d----im~~-~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~   85 (164)
T 2pfi_A           11 HHVRVEH----FMNH-SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQC   85 (164)
T ss_dssp             CSCBHHH----HCBC-CCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------CCCCB
T ss_pred             cCCCHHH----HcCC-CCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCcccch
Confidence            4567888    7886 8999999999999999999999999999984 25899999999999988743211 00112457


Q ss_pred             HHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          355 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       355 v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      +.++|.....      ....++++++++++.++++.|.+++.+++||+| +| +++|+||.+||++++..
T Consensus        86 v~~~m~~~~~------~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g-~l~Giit~~dil~~~~~  147 (164)
T 2pfi_A           86 LQDILARGCP------TEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RG-RAVGCVSWVEMKKAISN  147 (164)
T ss_dssp             HHHHHHTTCC------CBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TT-EEEEEEEHHHHHHHHHH
T ss_pred             hhhhhccccc------ccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CC-EEEEEEEHHHHHHHHHh
Confidence            9999984100      000178999999999999999999999999999 56 99999999999999874

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.67  E-value=2.3e-16  Score=136.75  Aligned_cols=126  Identities=14%  Similarity=0.251  Sum_probs=110.3

Q ss_pred             CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEe-cCCCCcEEEEEeHHHHHHHhhcCCCCCccccccc
Q 013373          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPII-EPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS  278 (444)
Q Consensus       200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVv-d~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~  278 (444)
                      +...+++++|...  .+++++.+++++.+|++.|.+++++++||+ +++.++++|+||..|+++.+...         ..
T Consensus        17 l~~~~v~~iM~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~---------~~   85 (153)
T 3oco_A           17 MNDKVASDVMVDR--TSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARID---------DK   85 (153)
T ss_dssp             HHHCBHHHHSEEG--GGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHH---------TT
T ss_pred             cCCCEeeeEecch--hheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcC---------CC
Confidence            3467899999832  368999999999999999999999999999 65337999999999999887654         25


Q ss_pred             CcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373          279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (444)
Q Consensus       279 ~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~  343 (444)
                      .++++    +| + ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|+++.+..
T Consensus        86 ~~v~~----~m-~-~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~-~g~~vGivt~~dil~~l~~  143 (153)
T 3oco_A           86 AKIST----IM-R-DIVSVPENMKVPDVMEEMSAHRVPMAIVIDE-YGGTSGIITDKDVYEELFG  143 (153)
T ss_dssp             SBGGG----TC-B-CCEEEETTSBHHHHHHHHHHTTCSCEEEECT-TSCEEEEECHHHHHHHHHC
T ss_pred             CcHHH----Hh-C-CCeEECCCCCHHHHHHHHHHcCCcEEEEEeC-CCCEEEEeeHHHHHHHHhc
Confidence            68899    78 5 7999999999999999999999999999997 7999999999999988763

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.67  E-value=1.7e-16  Score=140.89  Aligned_cols=128  Identities=21%  Similarity=0.368  Sum_probs=106.5

Q ss_pred             CcccccccCCCCCC-CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCc------------
Q 013373          279 QPISDLGLPFMSSD-EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE------------  345 (444)
Q Consensus       279 ~~v~~l~l~im~~~-~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~------------  345 (444)
                      .++++    +|.+. +++++.+++++.+|++.|.+++++++||+|+ +++++|+||.+|++++.....            
T Consensus         4 ~~v~d----im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~   78 (180)
T 3sl7_A            4 YTVGD----FMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDD-NWTLVGVVSDYDLLALDSISGRSQNDTNLFPDV   78 (180)
T ss_dssp             CBHHH----HSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHTCC-----------------
T ss_pred             eeHHH----hcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECC-CCeEEEEEEHHHHHhhhhhccccCCcccccccc
Confidence            35667    57642 5889999999999999999999999999998 899999999999985321000            


Q ss_pred             ------------cccccccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEE
Q 013373          346 ------------LFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVI  413 (444)
Q Consensus       346 ------------~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvI  413 (444)
                                  ........++.++|.+            +++++++++++.+++++|.+++++++||+|++| +++|+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~~vGii  145 (180)
T 3sl7_A           79 DSTWKTFNELQKLISKTYGKVVGDLMTP------------SPLVVRDSTNLEDAARLLLETKFRRLPVVDADG-KLIGIL  145 (180)
T ss_dssp             --CCCSHHHHHHHHHTTTTCBHHHHSEE------------SCCCEETTSBHHHHHHHHTTSTTCEEEEECTTC-BEEEEE
T ss_pred             cchhhhhHHHHHHHhccccccHHHHhCC------------CceEeCCCCcHHHHHHHHHHcCCCEEEEECCCC-eEEEEE
Confidence                        0011235689999985            789999999999999999999999999999887 999999


Q ss_pred             eHHHHHHHhHc
Q 013373          414 TLRDVISCFIF  424 (444)
Q Consensus       414 T~~DIl~~l~~  424 (444)
                      |.+||++++..
T Consensus       146 t~~dil~~~~~  156 (180)
T 3sl7_A          146 TRGNVVRAALQ  156 (180)
T ss_dssp             EHHHHHHHHHH
T ss_pred             EHHHHHHHHHH
Confidence            99999999874

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.66  E-value=6e-16  Score=138.39  Aligned_cols=126  Identities=24%  Similarity=0.313  Sum_probs=110.5

Q ss_pred             cCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHH
Q 013373          278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRD  357 (444)
Q Consensus       278 ~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~  357 (444)
                      ..++++    +|++ +++++.+++++.+|++.|.+++++++||+|+ +|+++|++|.+|++..+....  ......++.+
T Consensus         8 ~~~v~~----im~~-~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~-~g~~vGivt~~dl~~~~~~~~--~~~~~~~v~~   79 (184)
T 1pvm_A            8 FMRVEK----IMNS-NFKTVNWNTTVFDAVKIMNENHLYGLVVKDD-NGNDVGLLSERSIIKRFIPRN--KKPDEVPIRL   79 (184)
T ss_dssp             CCBGGG----TSBT-TCCEEETTCBHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHHHTGGGC--CCGGGSBGGG
T ss_pred             ccCHHH----hcCC-CCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHHHhhcc--cCcccCCHHH
Confidence            367888    7876 8999999999999999999999999999997 799999999999998765211  1124568999


Q ss_pred             HhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          358 FMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       358 ~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      +|..            ++.++.+++++.+++++|.+++.+++||+|++| +++|+||..||++++..
T Consensus        80 im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A           80 VMRK------------PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPG-RVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             TSBS------------SCCEEETTCBHHHHHHHHHHHTCSEEEEECTTC-CEEEEEEHHHHTTTSCH
T ss_pred             HhCC------------CCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCC-eEEEEEEHHHHHHHHHh
Confidence            9984            789999999999999999999999999999887 99999999999987764

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.66  E-value=4.3e-16  Score=130.62  Aligned_cols=122  Identities=13%  Similarity=0.200  Sum_probs=108.6

Q ss_pred             CCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcc
Q 013373          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI  281 (444)
Q Consensus       202 ~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v  281 (444)
                      ..+++++|.    .++.++.+++++.+|++.|.+++++++||+|+  ++++|++|..|+.+.+.....       ...++
T Consensus         4 s~~v~~~m~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~~Givt~~dl~~~~~~~~~-------~~~~v   70 (128)
T 3gby_A            4 SVTFSYLAE----TDYPVFTLGGSTADAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRKGWPT-------VKEKL   70 (128)
T ss_dssp             TCBGGGGCB----CCSCCEETTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHTTCSSSCC-------TTCBC
T ss_pred             ceEHHHhhc----CCcceECCCCCHHHHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHHhhCCc-------ccCcH
Confidence            567899998    67999999999999999999999999999997  799999999999987654321       23578


Q ss_pred             cccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       282 ~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      ++    +|.+ ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|+++.+.
T Consensus        71 ~~----~m~~-~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~g~~~Giit~~dll~~l~  125 (128)
T 3gby_A           71 GE----ELLE-TVRSYRPGEQLFDNLISVAAAKCSVVPLADE-DGRYEGVVSRKRILGFLA  125 (128)
T ss_dssp             CG----GGCB-CCCCBCTTSBGGGSHHHHHHCSSSEEEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred             HH----HccC-CCcEECCCCCHHHHHHHHHhCCCcEEEEECC-CCCEEEEEEHHHHHHHHH
Confidence            88    7886 8899999999999999999999999999997 899999999999998875

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.66  E-value=4.9e-16  Score=135.40  Aligned_cols=130  Identities=18%  Similarity=0.251  Sum_probs=110.4

Q ss_pred             cccCcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcc--cccccc
Q 013373          276 IASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL--FSNFRQ  352 (444)
Q Consensus       276 ~~~~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~--~~~~~~  352 (444)
                      +...++++    +|.+ .+++++.+++++.+|++.|.+++++.+||+|+ +++++|+||.+|++..+.....  +.....
T Consensus        11 l~~~~v~~----im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~~~lvGivt~~dl~~~~~~~~~~~~~~~~~   85 (159)
T 1yav_A           11 LLEATVGQ----FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP-SYRLHGLIGTNMIMNSIFGLERIEFEKLDQ   85 (159)
T ss_dssp             CTTCBHHH----HSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT-TCBEEEEEEHHHHHHHHBCSSSBCGGGTTT
T ss_pred             HhHhhHHH----HhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECC-CCCEEEEeEHHHHHHHhhhhcccchhhhcc
Confidence            35578888    6753 15889999999999999999999999999998 7899999999999988764221  111346


Q ss_pred             CcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013373          353 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  425 (444)
Q Consensus       353 ~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e  425 (444)
                      .++.++|..            ++.++.+++++.++++.|.++++  +||+|++| +++|+||.+||++++..+
T Consensus        86 ~~v~~~m~~------------~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g-~~vGiit~~dil~~~~~~  143 (159)
T 1yav_A           86 ITVEEVMLT------------DIPRLHINDPIMKGFGMVINNGF--VCVENDEQ-VFEGIFTRRVVLKELNKH  143 (159)
T ss_dssp             SBHHHHSBC------------SCCEEETTSBHHHHHHHTTTCSE--EEEECTTC-BEEEEEEHHHHHHHHHHH
T ss_pred             CCHHHhcCC------------CCceEcCCCCHHHHHHHHHhCCE--EEEEeCCC-eEEEEEEHHHHHHHHHHH
Confidence            789999985            88999999999999999999876  99999877 999999999999998753

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.66  E-value=1e-15  Score=130.48  Aligned_cols=122  Identities=16%  Similarity=0.245  Sum_probs=107.4

Q ss_pred             CCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCC--cEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013373          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTP--DIKNYITQSAVVQGLEGCKGRDWFDIIASQ  279 (444)
Q Consensus       202 ~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~--~l~Givt~~di~~~l~~~~~~~~~~~~~~~  279 (444)
                      ..+++++|.    .+++++.+++++.+|++.|.+++++++||+|++ +  +++|++|..|+++.+.....       ...
T Consensus         4 ~~~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~~~Givt~~dl~~~~~~~~~-------~~~   71 (141)
T 2rih_A            4 AIRTSELLK----RPPVSLPETATIREVATELAKNRVGLAVLTARD-NPKRPVAVVSERDILRAVAQRLD-------LDG   71 (141)
T ss_dssp             -CBGGGGCC----SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEEEEHHHHHHHHHTTCC-------TTS
T ss_pred             ceEHHHHhc----CCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-CcceeEEEEEHHHHHHHHhcCCC-------CCC
Confidence            356889998    679999999999999999999999999999986 7  89999999999998765421       356


Q ss_pred             cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      ++.+    +|.+ ++.++.++ ++.++++.|.+++++.+||+|+ +|+++|+||.+|+++.+.
T Consensus        72 ~v~~----~m~~-~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~  127 (141)
T 2rih_A           72 PAMP----IANS-PITVLDTD-PVHVAAEKMRRHNIRHVVVVNK-NGELVGVLSIRDLCFERA  127 (141)
T ss_dssp             BSGG----GCBC-CCEEETTS-BHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHSCHH
T ss_pred             CHHH----HcCC-CCeEEcCC-CHHHHHHHHHHcCCeEEEEEcC-CCcEEEEEEHHHHHHHHH
Confidence            8888    7876 89999999 9999999999999999999997 799999999999986643

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.66  E-value=7.4e-16  Score=132.75  Aligned_cols=129  Identities=18%  Similarity=0.297  Sum_probs=110.6

Q ss_pred             CCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcc
Q 013373          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI  281 (444)
Q Consensus       202 ~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v  281 (444)
                      ..+++++|...  .+++++.+++++.+|++.|.+++++++||+|++ ++++|++|..|+++.+...... ........++
T Consensus        14 ~~~v~~im~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~-~~~~~~~~~v   89 (150)
T 3lqn_A           14 QIFVKDLMISS--EKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPM-YKLHGLISTAMILDGILGLERI-EFERLEEMKV   89 (150)
T ss_dssp             HCBHHHHSEEG--GGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHTBCSSSB-CGGGGGGCBG
T ss_pred             cCChhhcccCC--CceEEECCCCcHHHHHHHHHHcCCcEEEEECCC-CCEEEEEEHHHHHHHHHhhccc-chhHHhcCCH
Confidence            56799999832  358999999999999999999999999999976 8999999999999988643211 1223356789


Q ss_pred             cccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       282 ~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      .+    +|.+ ++.++.+++++.++++.|.++++  +||+|+ +|+++|+||.+|+++.+.
T Consensus        90 ~~----~m~~-~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~-~g~~~Giit~~dil~~l~  142 (150)
T 3lqn_A           90 EQ----VMKQ-DIPVLKLEDSFAKALEMTIDHPF--ICAVNE-DGYFEGILTRRAILKLLN  142 (150)
T ss_dssp             GG----TCBS-SCCEEETTCBHHHHHHHHHHCSE--EEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred             HH----HhcC-CCceeCCCCCHHHHHHHHHhCCE--EEEECC-CCcEEEEEEHHHHHHHHH
Confidence            99    7886 89999999999999999999987  999998 899999999999999875

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.65  E-value=2.1e-15  Score=127.92  Aligned_cols=125  Identities=18%  Similarity=0.307  Sum_probs=109.2

Q ss_pred             CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHH-HhhcCCCCCccccccc
Q 013373          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ-GLEGCKGRDWFDIIAS  278 (444)
Q Consensus       200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~-~l~~~~~~~~~~~~~~  278 (444)
                      +...+++++|.    .+++++.+++++.+|++.|.+++++++||+|++ ++++|++|..|+++ ++....       ...
T Consensus         4 l~~~~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~-------~~~   71 (138)
T 2yzi_A            4 DMKAPIKVYMT----KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDD-GNVVGFFTKSDIIRRVIVPGL-------PYD   71 (138)
T ss_dssp             CTTSBGGGTCB----CCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCC-------CTT
T ss_pred             hhhhhHHHHhc----CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHhcCC-------ccc
Confidence            45678999998    679999999999999999999999999999976 89999999999984 443321       145


Q ss_pred             CcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373          279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (444)
Q Consensus       279 ~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~  343 (444)
                      .++.+    +|.+ ++.++.+++++.++++.|.+++++.+ |+|+ +|+++|+||.+|+++.+..
T Consensus        72 ~~v~~----~m~~-~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~-~g~~~Giit~~dil~~~~~  129 (138)
T 2yzi_A           72 IPVER----IMTR-NLITANVNTPLGEVLRKMAEHRIKHI-LIEE-EGKIVGIFTLSDLLEASRR  129 (138)
T ss_dssp             SBGGG----TCBC-SCCEEETTSBHHHHHHHHHHHTCSEE-EEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             CCHHH----HhhC-CCeEECCCCcHHHHHHHHHhcCCCEE-EECC-CCCEEEEEEHHHHHHHHHH
Confidence            68888    7876 89999999999999999999999999 9997 7999999999999988763

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.65  E-value=1.6e-15  Score=133.14  Aligned_cols=133  Identities=18%  Similarity=0.190  Sum_probs=114.4

Q ss_pred             cCCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCccccc
Q 013373          197 EEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDII  276 (444)
Q Consensus       197 ~~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~  276 (444)
                      ...+...+|+++|... ..+++++.+++++.+|++.|.+++++++||+|++ ++++|+||..|+++.+.....     ..
T Consensus        18 ~~~l~~~~v~dim~~~-~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~-----~~   90 (165)
T 3fhm_A           18 YFQGMATFVKDLLDRK-GRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDAD-GVVLGIFTERDLVKAVAGQGA-----AS   90 (165)
T ss_dssp             CCSSSSCBHHHHHHHH-CSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHGG-----GG
T ss_pred             hHhhhhcCHHHHhccC-CCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHHhcCC-----cc
Confidence            3456678999999831 1358999999999999999999999999999977 899999999999988765310     12


Q ss_pred             ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373          277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (444)
Q Consensus       277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~  343 (444)
                      ...++.+    +|.+ ++.++.+++++.++++.|.+++++.+||+|+  |+++|+||.+|+++.+..
T Consensus        91 ~~~~v~~----~m~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--g~~~Giit~~dil~~~~~  150 (165)
T 3fhm_A           91 LQQSVSV----AMTK-NVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN--GRLAGIISIGDVVKARIG  150 (165)
T ss_dssp             GTSBGGG----TSBS-SCCCBCTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHTTC
T ss_pred             ccCCHHH----HhcC-CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHH
Confidence            4578999    7876 8999999999999999999999999999994  899999999999998764

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.65  E-value=1.2e-15  Score=129.28  Aligned_cols=125  Identities=24%  Similarity=0.431  Sum_probs=109.2

Q ss_pred             CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHH-HHHhhcCCCCCccccccc
Q 013373          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAV-VQGLEGCKGRDWFDIIAS  278 (444)
Q Consensus       200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di-~~~l~~~~~~~~~~~~~~  278 (444)
                      +...+++++|.    .+++++.+++++.+|++.|.+++++++||+|++ ++++|++|..|+ .+++....       ...
T Consensus         5 l~~~~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~-------~~~   72 (138)
T 2p9m_A            5 LKNIKVKDVMT----KNVITAKRHEGVVEAFEKMLKYKISSLPVIDDE-NKVIGIVTTTDIGYNLIRDKY-------TLE   72 (138)
T ss_dssp             CTTCBGGGTSB----CSCCCEETTSBHHHHHHHHHHHTCCEEEEECTT-CBEEEEEEHHHHHHHHTTTCC-------CSS
T ss_pred             cccCCHHHhhc----CCceEECCCCcHHHHHHHHHHCCCcEEEEECCC-CeEEEEEEHHHHHHHHHhhcc-------cCC
Confidence            34678999997    678999999999999999999999999999976 899999999999 88765431       145


Q ss_pred             CcccccccCCCCCCCceEecCCCcHHHHHHHHHHcC-----CCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNN-----IGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       279 ~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~-----~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      .++.+    +|.+ ++.++.+++++.++++.|.+++     ++.+||+|+ +|+++|+||.+|+++.+.
T Consensus        73 ~~v~~----~m~~-~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~  135 (138)
T 2p9m_A           73 TTIGD----VMTK-DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDK-NNKLVGIISDGDIIRTIS  135 (138)
T ss_dssp             CBHHH----HSCS-SCCCEETTSBHHHHHHHHTCC-----CCCEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             cCHHH----HhCC-CcEEECCCCCHHHHHHHHHhcCCccccccEEEEECC-CCeEEEEEEHHHHHHHHH
Confidence            68888    7876 8899999999999999999999     999999997 799999999999998764

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.64  E-value=2.5e-15  Score=124.99  Aligned_cols=121  Identities=18%  Similarity=0.215  Sum_probs=106.7

Q ss_pred             cHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccc
Q 013373          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  283 (444)
Q Consensus       204 ~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~  283 (444)
                      +++++|.    ++++++.+++++.+|++.|.+++++++||+| + ++++|++|..|+.+.+.....      ....++.+
T Consensus         2 ~v~~~m~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-~~~~G~it~~dl~~~~~~~~~------~~~~~v~~   69 (125)
T 1pbj_A            2 RVEDVMV----TDVDTIDITASLEDVLRNYVENAKGSSVVVK-E-GVRVGIVTTWDVLEAIAEGDD------LAEVKVWE   69 (125)
T ss_dssp             CHHHHCB----CSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-T-TEEEEEEEHHHHHHHHHHTCC------TTTSBHHH
T ss_pred             CHHHhcC----CCceEECCCCcHHHHHHHHHHcCCCEEEEEe-C-CeeEEEEeHHHHHHHHhcCCc------ccccCHHH
Confidence            5788887    6799999999999999999999999999999 5 899999999999988765421      13568888


Q ss_pred             cccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373          284 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (444)
Q Consensus       284 l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~  343 (444)
                          +|.+ ++.++.+++++.++++.|.+++++.+||+|+  |+++|++|.+|+++.+..
T Consensus        70 ----~m~~-~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~--~~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           70 ----VMER-DLVTISPRATIKEAAEKMVKNVVWRLLVEED--DEIIGVISATDILRAKMA  122 (125)
T ss_dssp             ----HCBC-GGGEECTTSCHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHC-
T ss_pred             ----HcCC-CCeEECCCCCHHHHHHHHHhcCCcEEEEEEC--CEEEEEEEHHHHHHHHHh
Confidence                6876 8999999999999999999999999999994  899999999999988753

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.64  E-value=7.8e-16  Score=144.09  Aligned_cols=226  Identities=14%  Similarity=0.175  Sum_probs=139.9

Q ss_pred             cCCccCCCCCCCCCeEEEeCCCCHHHHHHHHHHCCCccCceecCCCCCCCCcccceeEEEehhHHHHHHHhhhhHHhhhc
Q 013373           43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF  122 (444)
Q Consensus        43 ~~~v~~~~~~~~~~~i~v~~~~si~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~~Giv~~~di~~~~l~~~~~~~~~~  122 (444)
                      ..+|++++   ..+++++.+++++.+|+++|.+++++++||+|++        ++++|+||..|+++++...........
T Consensus         6 ~~~v~~im---~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~--------~~l~Giit~~di~~~~~~~~~~~~~~~   74 (245)
T 3l2b_A            6 KLKVEDLE---MDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGN--------NHLLGMLSTSNITATYMDIWDSNILAK   74 (245)
T ss_dssp             CCBGGGSC---CBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTT--------CBEEEEEEHHHHHHHHHCCCCTTHHHH
T ss_pred             cCcHHHhc---CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC--------CEEEEEEEHHHHHHHHHHhhhhhhhhh
Confidence            45677776   4578899999999999999999999999999986        499999999999998865332110000


Q ss_pred             ccccccccccccccccccchhcccCCCcchhhhhhHHhhhhhhccchhhhccCCCCCccccccccchhHHhhhccCCCCC
Q 013373          123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS  202 (444)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  202 (444)
                                                ....+..+.....|....|.-......|+  ..                  ...
T Consensus        75 --------------------------~~~~~~~v~~~l~~~~l~~~~~~~~~~g~--~~------------------i~a  108 (245)
T 3l2b_A           75 --------------------------SATSLDNILDTLSAEAQNINEERKVFPGK--VV------------------VAA  108 (245)
T ss_dssp             --------------------------TTCCHHHHHHHTTCEEEECCTTCCCCCSC--EE------------------ECC
T ss_pred             --------------------------ccCCHHHHHHHhCCEEEeccCCcceeeee--EE------------------EEe
Confidence                                      00001111111111111111000000000  00                  000


Q ss_pred             CcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCC-----------CCcEEEEEeHHHHHHHhhcCCCCC
Q 013373          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG-----------TPDIKNYITQSAVVQGLEGCKGRD  271 (444)
Q Consensus       203 ~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~-----------~~~l~Givt~~di~~~l~~~~~~~  271 (444)
                      .....+........++.+ .+  -.++...+.+.++..+++.+..           ...+..+.|..|........    
T Consensus       109 ~~~~~~~~~~~~~~ivIv-gd--r~~~~~~~i~~~~~~liit~~~~~~~~v~~~a~~~~~~~i~t~~d~~~~~~~~----  181 (245)
T 3l2b_A          109 MQAESLKEFISEGDIAIA-GD--RAEIQAELIELKVSLLIVTGGHTPSKEIIELAKKNNITVITTPHDSFTASRLI----  181 (245)
T ss_dssp             SCGGGGGGTCCTTCEEEE-CS--CHHHHHHHHHTTCSEEEECTTCCCCHHHHHHHHHHTCEEEECSSCHHHHHHHG----
T ss_pred             CChHHHHhcCCCCCEEEE-CC--CHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHcCCeEEEeCCChHHHHHHH----
Confidence            111122221222344444 22  3778888889999999888642           12345666666654432221    


Q ss_pred             cccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHh
Q 013373          272 WFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  341 (444)
Q Consensus       272 ~~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l  341 (444)
                          ....++++    +|++.++.++.+++++.+++++|.+++++++||+|+ +|+++|+||.+|+++..
T Consensus       182 ----~~~~~v~~----im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~-~~~~~Giit~~dll~~~  242 (245)
T 3l2b_A          182 ----VQSLPVDY----VMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDE-NNKVVGSIARFHLISTH  242 (245)
T ss_dssp             ----GGGSBHHH----HSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECT-TCBEEEEEECC------
T ss_pred             ----hcCCceee----EecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcC-CCeEEEEEEHHHhhchh
Confidence                13467889    798238999999999999999999999999999998 79999999999998763

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.63  E-value=8.7e-16  Score=132.17  Aligned_cols=133  Identities=16%  Similarity=0.250  Sum_probs=108.2

Q ss_pred             CCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCC-------ccc
Q 013373          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD-------WFD  274 (444)
Q Consensus       202 ~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~-------~~~  274 (444)
                      ..+++++|...  .+++++.+++++.+|++.|.+++++++||+|++ ++++|++|..|+++++.......       .+.
T Consensus         4 ~~~v~~im~~~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~   80 (152)
T 4gqw_A            4 VYTVGEFMTKK--EDLHVVKPTTTVDEALELLVENRITGFPVIDED-WKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLS   80 (152)
T ss_dssp             CSBGGGTSEES--TTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHTTCC----CCHHHHHHHTC--
T ss_pred             eEEhhhccCCC--CCCeEECCCCcHHHHHHHHHHcCCceEEEEeCC-CeEEEEEEHHHHHHhhcccCcccchHHHHHHHH
Confidence            46789999832  369999999999999999999999999999987 89999999999987543221110       011


Q ss_pred             ccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373          275 IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (444)
Q Consensus       275 ~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~  343 (444)
                      .....++.+    +|.+ +++++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|+++.+..
T Consensus        81 ~~~~~~v~~----~m~~-~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dil~~~~~  143 (152)
T 4gqw_A           81 KTNGKLVGD----LMTP-APLVVEEKTNLEDAAKILLETKYRRLPVVDS-DGKLVGIITRGNVVRAALQ  143 (152)
T ss_dssp             ---CCBHHH----HSEE-SCCCEESSSBHHHHHHHHHHSSCCEEEEECT-TSBEEEEEEHHHHHHHHHC
T ss_pred             HhccccHHH----hcCC-CceEECCCCcHHHHHHHHHHCCCCEEEEECC-CCcEEEEEEHHHHHHHHHh
Confidence            123568888    6876 7889999999999999999999999999997 8999999999999998764

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.63  E-value=3e-15  Score=130.51  Aligned_cols=125  Identities=12%  Similarity=0.332  Sum_probs=108.0

Q ss_pred             CCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCc
Q 013373          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP  280 (444)
Q Consensus       201 ~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~  280 (444)
                      ...+|+++|.    ++ +++.+++++.+|++.|.+++++++||+|++ ++++|+||..|+++.+.....      ....+
T Consensus        15 ~~~~v~~im~----~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~------~~~~~   82 (159)
T 3fv6_A           15 KKLQVKDFQS----IP-VVIHENVSVYDAICTMFLEDVGTLFVVDRD-AVLVGVLSRKDLLRASIGQQE------LTSVP   82 (159)
T ss_dssp             TTCBGGGSCB----CC-CEEETTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHTSCSC------TTTCB
T ss_pred             hhCCHHHHcC----CC-EEECCCCcHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHhhccCc------ccCcC
Confidence            3567999997    44 599999999999999999999999999976 899999999999997754311      14568


Q ss_pred             ccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCC---eEEEEEeHHHHHHHhc
Q 013373          281 ISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQK---KIVGNVSIRDIRHLLL  342 (444)
Q Consensus       281 v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~---~lvGiIt~~Dll~~l~  342 (444)
                      +.+    +|.+ .+++++.+++++.++++.|.+++++.+||+|+ +|   +++|+||.+||++++.
T Consensus        83 v~~----~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~~~vGiit~~dil~~l~  143 (159)
T 3fv6_A           83 VHI----IMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKD-TDKGFEVIGRVTKTNMTKILV  143 (159)
T ss_dssp             GGG----TSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEE-CSSSEEEEEEEEHHHHHHHHH
T ss_pred             HHH----HHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeC-CCcceeEEEEEEHHHHHHHHH
Confidence            888    6763 26789999999999999999999999999997 67   9999999999998875

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.63  E-value=1.4e-15  Score=139.43  Aligned_cols=122  Identities=16%  Similarity=0.234  Sum_probs=107.4

Q ss_pred             ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013373          277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVR  356 (444)
Q Consensus       277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~  356 (444)
                      ...++.+    +|.. +++++.+++++.+|++.|.+++++++||+|+ +++++|+||.+|+++.+.         ..++.
T Consensus        11 ~~~~~~~----~~~~-~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-~~~l~Givt~~dl~~~~~---------~~~v~   75 (213)
T 1vr9_A           11 HHMKVKK----WVTQ-DFPMVEESATVRECLHRMRQYQTNECIVKDR-EGHFRGVVNKEDLLDLDL---------DSSVF   75 (213)
T ss_dssp             --CBGGG----GCBS-CSCEEETTCBHHHHHHHHHHTTSSEEEEECT-TSBEEEEEEGGGGTTSCT---------TSBSG
T ss_pred             cccCHHH----hhcC-CCeEECCCCcHHHHHHHHHHCCCCEEEEEcC-CCEEEEEEEHHHHHhhcC---------CCcHH
Confidence            3456667    6776 8999999999999999999999999999997 799999999999976532         45799


Q ss_pred             HHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCC
Q 013373          357 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP  426 (444)
Q Consensus       357 ~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~  426 (444)
                      ++|.+            +++++++++++.+++++|.+++++++||+|++| +++|+||.+||++.+....
T Consensus        76 ~im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~lvGiit~~Dil~~~~~~~  132 (213)
T 1vr9_A           76 NKVSL------------PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEM-RLKGAVSLHDFLEALIEAL  132 (213)
T ss_dssp             GGCBC------------TTCCEETTSBHHHHHHHHHHCCCSEEEEECTTC-BEEEEEEHHHHHHHHHHSC
T ss_pred             HHccC------------CCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCC-EEEEEEEHHHHHHHHHHHh
Confidence            99984            889999999999999999999999999999887 9999999999999887543

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.63  E-value=7.4e-16  Score=137.46  Aligned_cols=128  Identities=19%  Similarity=0.291  Sum_probs=108.3

Q ss_pred             ccCcccccccCCCCCCC----ceEe--cCCCcHHHHHHHHHHcCCCeEeEE--eCCCCeEEEEEeHHHHHHHhcCCcc--
Q 013373          277 ASQPISDLGLPFMSSDE----VITI--QSNELILEAFKRMKDNNIGGIPVV--EGQQKKIVGNVSIRDIRHLLLKPEL--  346 (444)
Q Consensus       277 ~~~~v~~l~l~im~~~~----~~~v--~~~~sl~ea~~~m~~~~~~~lpVv--d~~~~~lvGiIt~~Dll~~l~~~~~--  346 (444)
                      ...++++    +|++ .    ++++  .+++++.+|++.|.+++++++||+  |+ +|+++|+||.+|+++.+.....  
T Consensus         9 ~~~~v~d----im~~-~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~-~~~lvGiit~~dl~~~~~~~~~~~   82 (185)
T 2j9l_A            9 HKTLAMD----VMKP-RRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRE-SQRLVGFVLRRDLIISIENARKKQ   82 (185)
T ss_dssp             CCCBHHH----HSBS-CTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTT-TCBEEEEEEHHHHHHHHHHHHTSC
T ss_pred             ccCcHHH----Hhcc-cccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECC-CCeEEEEEEHHHHHHHHHhhcccC
Confidence            4568888    7876 4    7888  999999999999999999999999  56 8999999999999987642100  


Q ss_pred             -------------------ccccccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCC
Q 013373          347 -------------------FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEA  407 (444)
Q Consensus       347 -------------------~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~  407 (444)
                                         .......++.++|..            +++++++++++.++++.|.+++++++||+| +| 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g-  148 (185)
T 2j9l_A           83 DGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDL------------SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NG-  148 (185)
T ss_dssp             SCCCTTCEEECSSSCCCCCTTCCCCEECGGGEES------------SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TT-
T ss_pred             CCccccceeecccCCcccccccccCccHHHhhCc------------CCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CC-
Confidence                               001234578899874            889999999999999999999999999999 56 


Q ss_pred             eEEEEEeHHHHHHHhHc
Q 013373          408 EVVGVITLRDVISCFIF  424 (444)
Q Consensus       408 ~lvGvIT~~DIl~~l~~  424 (444)
                      +++|+||++||++++..
T Consensus       149 ~~vGiit~~dll~~l~~  165 (185)
T 2j9l_A          149 RLLGIITKKDVLKHIAQ  165 (185)
T ss_dssp             EEEEEEEHHHHHHHHHH
T ss_pred             EEEEEEEHHHHHHHHHH
Confidence            99999999999999974

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.63  E-value=1.5e-15  Score=130.82  Aligned_cols=121  Identities=19%  Similarity=0.305  Sum_probs=106.1

Q ss_pred             CcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCccc
Q 013373          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (444)
Q Consensus       203 ~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~  282 (444)
                      .+++++|...  .+++++.+++++.+|++.|.+++++++||+|++ ++++|+||..|+++.+.....      ....++.
T Consensus        28 ~~v~dim~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~------~~~~~v~   98 (149)
T 3k2v_A           28 LRVNDIMHTG--DEIPHVGLQATLRDALLEITRKNLGMTAICDDD-MNIIGIFTDGDLRRVFDTGVD------MRDASIA   98 (149)
T ss_dssp             SBGGGTSBCG--GGSCEECTTCBHHHHHHHHHHHTSSEEEEECTT-CBEEEEEEHHHHHHHHCSSSC------CTTCBHH
T ss_pred             cCHHHHhcCC--CCCeEECCCCcHHHHHHHHHhCCCcEEEEECCC-CcEEEEecHHHHHHHHhcCCC------cccCcHH
Confidence            5799999821  279999999999999999999999999999977 899999999999998865421      2456888


Q ss_pred             ccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373          283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (444)
Q Consensus       283 ~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~  339 (444)
                      +    +|.+ ++.++.+++++.++++.|.+++++.+||+|+ + +++|+||.+|+++
T Consensus        99 ~----~m~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~-~~~Giit~~dil~  148 (149)
T 3k2v_A           99 D----VMTR-GGIRIRPGTLAVDALNLMQSRHITCVLVADG-D-HLLGVVHMHDLLR  148 (149)
T ss_dssp             H----HSEE-SCCEECTTCBHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHTC
T ss_pred             H----HcCC-CCeEECCCCCHHHHHHHHHHcCCCEEEEecC-C-EEEEEEEHHHhhc
Confidence            8    7876 7899999999999999999999999999996 4 9999999999864

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.62  E-value=1.5e-15  Score=127.97  Aligned_cols=125  Identities=20%  Similarity=0.354  Sum_probs=106.8

Q ss_pred             CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHH-HHhhcCCCCCccccccc
Q 013373          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV-QGLEGCKGRDWFDIIAS  278 (444)
Q Consensus       200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~-~~l~~~~~~~~~~~~~~  278 (444)
                      +...+++++|.    ++++++.+++++.+|++.|.+++++++||+|++ ++++|++|..|++ +++..+..      ...
T Consensus         5 ~~~~~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~------~~~   73 (133)
T 1y5h_A            5 FTMTTARDIMN----AGVTCVGEHETLTAAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGLD------PNT   73 (133)
T ss_dssp             ---CCHHHHSE----ETCCCEETTSBHHHHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGTCC------TTT
T ss_pred             hhhcCHHHHhc----CCceEeCCCCCHHHHHHHHHHhCCCeEEEECCC-CeEEEEEeHHHHHHHHHhcCCC------ccc
Confidence            34568999998    568999999999999999999999999999876 8999999999998 45554321      134


Q ss_pred             CcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       279 ~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      .++.+    +|.+ ++.++.+++++.++++.|.+++.+.+||+|+  |+++|++|.+|+++.+.
T Consensus        74 ~~v~~----~m~~-~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~--g~~~Giit~~dil~~l~  130 (133)
T 1y5h_A           74 ATAGE----LARD-SIYYVDANASIQEMLNVMEEHQVRRVPVISE--HRLVGIVTEADIARHLP  130 (133)
T ss_dssp             SBHHH----HHTT-CCCCEETTCCHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHTCC
T ss_pred             cCHHH----HhcC-CCEEECCCCCHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence            68888    7876 8999999999999999999999999999994  89999999999998764

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.62  E-value=3.3e-15  Score=130.41  Aligned_cols=129  Identities=17%  Similarity=0.298  Sum_probs=108.0

Q ss_pred             CCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCC--cccccccC
Q 013373          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD--WFDIIASQ  279 (444)
Q Consensus       202 ~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~--~~~~~~~~  279 (444)
                      ..+|+++|.    .+++++.+++++.+|+++|.+++++++||+|++ ++++|+||..|+++++.......  ........
T Consensus         4 ~~~v~dim~----~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~   78 (160)
T 2o16_A            4 MIKVEDMMT----RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQRSAQGDSLAFET   78 (160)
T ss_dssp             CCBGGGTSE----ESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC---------CCC
T ss_pred             cCcHHHHhc----CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHhhcccccccchhccc
Confidence            457899998    568999999999999999999999999999976 89999999999998775421100  00112456


Q ss_pred             cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      ++.+    +|.+ ++.++.+++++.++++.|.+++++.+||+|+  |+++|+||.+||++++.
T Consensus        79 ~v~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--g~lvGiit~~dil~~~~  134 (160)
T 2o16_A           79 PLFE----VMHT-DVTSVAPQAGLKESAIYMQKHKIGCLPVVAK--DVLVGIITDSDFVTIAI  134 (160)
T ss_dssp             BHHH----HSCS-CEEEBCTTSBHHHHHHHHHHTTCSCEEEEET--TEEEEEECHHHHHHHHH
T ss_pred             CHHH----HhcC-CCeEECCCCCHHHHHHHHHHhCCCEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence            8888    7886 8999999999999999999999999999994  89999999999998865

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.62  E-value=2.6e-15  Score=143.42  Aligned_cols=133  Identities=19%  Similarity=0.289  Sum_probs=106.9

Q ss_pred             ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHc-----CCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccc
Q 013373          277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDN-----NIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR  351 (444)
Q Consensus       277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~-----~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~  351 (444)
                      ...++++    +|++ +++++.++.++.++++.|.++     +++++||+|+ +++++|+||.+|++...         .
T Consensus       133 ~~~~v~~----iM~~-~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~-~~~lvGivt~~dll~~~---------~  197 (278)
T 2yvy_A          133 EEDEAGG----LMTP-EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE-KGRLKGVLSLRDLIVAD---------P  197 (278)
T ss_dssp             CTTBGGG----TCBS-CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECT-TCBEEEEEEHHHHHHSC---------T
T ss_pred             CcchHHh----hcCC-CceEECCCCcHHHHHHHHHHccCCccceeEEEEECC-CCCEEEEEEHHHHhcCC---------C
Confidence            4567888    7987 899999999999999999987     7899999998 79999999999998641         2


Q ss_pred             cCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCccch
Q 013373          352 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLD  431 (444)
Q Consensus       352 ~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~~~~  431 (444)
                      ..++.++|..            +++++++++++.++++.|.+++.+.+||||++| +++|+||..||++.+..+....+.
T Consensus       198 ~~~v~~im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~lvGivT~~Dil~~i~~e~~ed~~  264 (278)
T 2yvy_A          198 RTRVAEIMNP------------KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEG-RLVGIVTVDDVLDVLEAEATEDIH  264 (278)
T ss_dssp             TCBSTTTSBS------------SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTS-BEEEEEEHHHHHHHC---------
T ss_pred             CCcHHHHhCC------------CCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCC-eEEEEEEHHHHHHHHHHHhHHHHH
Confidence            4578999974            889999999999999999999999999999887 999999999999999988777777


Q ss_pred             hhhhhh
Q 013373          432 NYFGFS  437 (444)
Q Consensus       432 ~~~~~~  437 (444)
                      .+.+..
T Consensus       265 ~~~g~~  270 (278)
T 2yvy_A          265 KLGAVD  270 (278)
T ss_dssp             ------
T ss_pred             HhcCCC
Confidence            766553

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.61  E-value=1.2e-14  Score=122.88  Aligned_cols=126  Identities=13%  Similarity=0.270  Sum_probs=106.6

Q ss_pred             CcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCccc
Q 013373          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (444)
Q Consensus       203 ~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~  282 (444)
                      .+++++|... ..+++++.+++++.+|++.|.+++++++||+| + ++++|++|..|+++.+.... .    .....++.
T Consensus         6 ~~v~~im~~~-~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~-~----~~~~~~v~   77 (135)
T 2rc3_A            6 KTVKHLLQEK-GHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-D-EKLVGILTERDFSRKSYLLD-K----PVKDTQVK   77 (135)
T ss_dssp             CBHHHHHHHH-CCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHGGGSS-S----CGGGSBGG
T ss_pred             eeHHHHHhcC-CCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-CEEEEEEehHHHHHHHHHcC-C----CcccCCHH
Confidence            3689999721 13588999999999999999999999999998 5 89999999999986443221 1    12457889


Q ss_pred             ccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373          283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (444)
Q Consensus       283 ~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~  343 (444)
                      +    +|.+ ++.++.+++++.++++.|.+++++.+||+|  +|+++|+||.+|+++.+..
T Consensus        78 ~----~m~~-~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~~~Giit~~dll~~~~~  131 (135)
T 2rc3_A           78 E----IMTR-QVAYVDLNNTNEDCMALITEMRVRHLPVLD--DGKVIGLLSIGDLVKDAIS  131 (135)
T ss_dssp             G----TSBC-SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred             H----hccC-CCeEECCCCcHHHHHHHHHHhCCCEEEEEe--CCEEEEEEEHHHHHHHHHh
Confidence            9    7876 899999999999999999999999999999  5899999999999988753

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.61  E-value=3.3e-15  Score=130.12  Aligned_cols=131  Identities=16%  Similarity=0.288  Sum_probs=110.6

Q ss_pred             CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013373          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  279 (444)
Q Consensus       200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~  279 (444)
                      +...+++++|...  .+++++.+++++.+|++.|.+++++++||+|++ ++++|++|..|+++.+...... ........
T Consensus        11 l~~~~v~~im~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~-~~~~~~~~   86 (159)
T 1yav_A           11 LLEATVGQFMIEA--DKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLERI-EFEKLDQI   86 (159)
T ss_dssp             CTTCBHHHHSEEG--GGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSSB-CGGGTTTS
T ss_pred             HhHhhHHHHhCCc--cceEEECCCCcHHHHHHHHHhCCCcEEEEECCC-CCEEEEeEHHHHHHHhhhhccc-chhhhccC
Confidence            4567899999831  268999999999999999999999999999986 8999999999999887653211 11223567


Q ss_pred             cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      ++.+    +|.+ ++.++.+++++.++++.|.++++  +||+|+ +|+++|+||.+|+++.+.
T Consensus        87 ~v~~----~m~~-~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~-~g~~vGiit~~dil~~~~  141 (159)
T 1yav_A           87 TVEE----VMLT-DIPRLHINDPIMKGFGMVINNGF--VCVEND-EQVFEGIFTRRVVLKELN  141 (159)
T ss_dssp             BHHH----HSBC-SCCEEETTSBHHHHHHHTTTCSE--EEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred             CHHH----hcCC-CCceEcCCCCHHHHHHHHHhCCE--EEEEeC-CCeEEEEEEHHHHHHHHH
Confidence            8888    7876 89999999999999999998877  999998 799999999999998865

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.61  E-value=1.5e-15  Score=145.64  Aligned_cols=132  Identities=19%  Similarity=0.316  Sum_probs=111.0

Q ss_pred             ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHc-----CCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccc
Q 013373          277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDN-----NIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR  351 (444)
Q Consensus       277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~-----~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~  351 (444)
                      ...++++    +|++ +++++.+++++.+|++.|.++     +++++||+|+ +++++|+||.+|++...         .
T Consensus       135 ~~~~v~~----iM~~-~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~-~~~lvGivt~~dll~~~---------~  199 (286)
T 2oux_A          135 EDETAGA----IMTT-EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ-ENHLVGVISLRDLIVND---------D  199 (286)
T ss_dssp             CTTBHHH----HCBS-CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT-TCBEEEEEEHHHHTTSC---------T
T ss_pred             ChHHHHH----hCCC-CceEECCCCcHHHHHHHHHHcccCccceeEEEEEcC-CCeEEEEEEHHHHHcCC---------C
Confidence            4568888    7886 899999999999999999998     7889999998 79999999999997541         2


Q ss_pred             cCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCccch
Q 013373          352 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLD  431 (444)
Q Consensus       352 ~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~~~~  431 (444)
                      ..++.++|..            +++++++++++.++++.|.+++++++||||++| +++|+||..||++.+..+....+.
T Consensus       200 ~~~v~~im~~------------~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g-~lvGiIT~~Dil~~i~~e~~ed~~  266 (286)
T 2oux_A          200 DTLIADILNE------------RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDD-HLLGIVTVDDIIDVIDDEAASDYS  266 (286)
T ss_dssp             TSBHHHHSBS------------CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEEHHHHHHHHHHHHHC---
T ss_pred             CCcHHHHcCC------------CCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCC-eEEEEEEHHHHHHHHHHHhHHHHH
Confidence            5689999984            889999999999999999999999999999887 999999999999999865444455


Q ss_pred             hhhhh
Q 013373          432 NYFGF  436 (444)
Q Consensus       432 ~~~~~  436 (444)
                      .+.+.
T Consensus       267 ~~~g~  271 (286)
T 2oux_A          267 GLAGV  271 (286)
T ss_dssp             -----
T ss_pred             HhcCC
Confidence            44443

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.61  E-value=5.6e-15  Score=128.13  Aligned_cols=131  Identities=14%  Similarity=0.277  Sum_probs=109.3

Q ss_pred             CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013373          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  279 (444)
Q Consensus       200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~  279 (444)
                      +...+++++|...  .+++++.+++++.+|++.|.+++++++||+|++ ++++|++|..|+++.+...... ........
T Consensus         8 l~~~~v~~im~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~-~~~~~~~~   83 (157)
T 2emq_A            8 FMQMTVKPFLIPA--DKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTS-YKLHGLISMTMMMDAILGLERI-EFERLETM   83 (157)
T ss_dssp             --CCBSTTTCEEG--GGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTT-CCEEEEEEHHHHHHHSBCSSSB-CGGGGGTC
T ss_pred             HhhCcHHhhccCC--ccceEECCCCcHHHHHHHHHHCCceEEEEEcCC-CCEEEEeeHHHHHHHHhccccc-chHHhcCC
Confidence            3467789999731  268899999999999999999999999999976 8999999999999877643111 11223467


Q ss_pred             cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      ++.+    +|.+ ++.++.+++++.++++.|.++++  +||+|+ +|+++|+||.+|+++.+.
T Consensus        84 ~v~~----~m~~-~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~-~g~~~Giit~~dil~~~~  138 (157)
T 2emq_A           84 KVEE----VMNR-NIPRLRLDDSLMKAVGLIVNHPF--VCVEND-DGYFAGIFTRREVLKQLN  138 (157)
T ss_dssp             BGGG----TCBC-CCCEEETTSBHHHHHHHHHHSSE--EEEECS-SSSEEEEEEHHHHHHHHH
T ss_pred             cHHH----HhCC-CCceecCCCcHHHHHHHHhhCCE--EEEEcC-CCeEEEEEEHHHHHHHHH
Confidence            8888    7876 89999999999999999999987  999997 799999999999998875

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.61  E-value=4.3e-15  Score=131.62  Aligned_cols=125  Identities=15%  Similarity=0.104  Sum_probs=106.8

Q ss_pred             CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013373          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  279 (444)
Q Consensus       200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~  279 (444)
                      +...+|+++|...  .+++++.+++++.+|++.|.+++++++||+|.+.++++|+||.+|+++.+...         ...
T Consensus        33 l~~~~v~diM~~~--~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~---------~~~  101 (173)
T 3ocm_A           33 LAERSIRSIMTPR--TDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITE---------GRV  101 (173)
T ss_dssp             HTTSCSTTTSEEG--GGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHH---------SSC
T ss_pred             cCCCCHHHhCCcH--HHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcC---------Ccc
Confidence            5577899999732  45899999999999999999999999999987547999999999999887543         123


Q ss_pred             cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (444)
Q Consensus       280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~  343 (444)
                      ++. +     .. +++++.+++++.++++.|.+++++.+||+|+ +|+++|+||..|++..+..
T Consensus       102 ~v~-~-----~~-~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde-~g~lvGiIT~~Dil~~l~~  157 (173)
T 3ocm_A          102 RRN-R-----LR-DPIIVHESIGILRLMDTLKRSRGQLVLVADE-FGAIEGLVTPIDVFEAIAG  157 (173)
T ss_dssp             CGG-G-----SB-CCCEECGGGCHHHHHHHHHHSTTCCEEEECT-TCCEEEEECHHHHHHHHHC
T ss_pred             hhH-h-----cC-CCeEECCCCcHHHHHHHHHHcCCeEEEEEeC-CCCEEEEEeHHHHHHHHhC
Confidence            444 2     33 6889999999999999999999999999997 8999999999999998763

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.60  E-value=1.6e-15  Score=131.86  Aligned_cols=121  Identities=11%  Similarity=0.173  Sum_probs=105.7

Q ss_pred             CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013373          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  279 (444)
Q Consensus       200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~  279 (444)
                      +...+++++|...  .+++++.+++++.+|++.|.+++++++||+|++.++++|++|..|+++.+...         ...
T Consensus        35 l~~~~v~diM~~~--~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~---------~~~  103 (156)
T 3oi8_A           35 FSDLEVRDAMITR--SRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNP---------EQF  103 (156)
T ss_dssp             HTTCBGGGTCEEG--GGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCG---------GGC
T ss_pred             cCCCCHhheeeeH--HHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcC---------Ccc
Confidence            5578899999832  36899999999999999999999999999997634999999999998876432         346


Q ss_pred             cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHH
Q 013373          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR  338 (444)
Q Consensus       280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll  338 (444)
                      ++.+    +|+  ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|++
T Consensus       104 ~v~~----im~--~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~-~g~~~Givt~~Dil  155 (156)
T 3oi8_A          104 HLKS----ILR--PAVFVPEGKSLTALLKEFREQRNHMAIVIDE-YGGTSGLVTFEDII  155 (156)
T ss_dssp             CHHH----HCB--CCCEEETTSBHHHHHHHHHHTTCCEEEEECT-TSSEEEEEEHHHHC
T ss_pred             cHHH----HcC--CCEEECCCCCHHHHHHHHHhcCCeEEEEECC-CCCEEEEEEHHHhc
Confidence            7888    675  4889999999999999999999999999998 89999999999985

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.60  E-value=7.2e-15  Score=131.33  Aligned_cols=124  Identities=14%  Similarity=0.259  Sum_probs=108.6

Q ss_pred             CcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCccc
Q 013373          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (444)
Q Consensus       203 ~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~  282 (444)
                      .+++++|.    ++++++.+++++.+|+++|.+++++++||+|++ ++++|++|..|+++.+.....     .....++.
T Consensus         9 ~~v~~im~----~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~-g~~vGivt~~dl~~~~~~~~~-----~~~~~~v~   78 (184)
T 1pvm_A            9 MRVEKIMN----SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNK-----KPDEVPIR   78 (184)
T ss_dssp             CBGGGTSB----TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCC-----CGGGSBGG
T ss_pred             cCHHHhcC----CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhccc-----CcccCCHH
Confidence            56889997    679999999999999999999999999999976 899999999999987653210     11456888


Q ss_pred             ccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       283 ~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      +    +|.+ ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+||..|+++++.
T Consensus        79 ~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~Givt~~dll~~~~  132 (184)
T 1pvm_A           79 L----VMRK-PIPKVKSDYDVKDVAAYLSENGLERCAVVDD-PGRVVGIVTLTDLSRYLS  132 (184)
T ss_dssp             G----TSBS-SCCEEETTCBHHHHHHHHHHHTCSEEEEECT-TCCEEEEEEHHHHTTTSC
T ss_pred             H----HhCC-CCcEECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHHHHH
Confidence            8    7886 8899999999999999999999999999997 799999999999987754

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.60  E-value=4e-15  Score=126.87  Aligned_cols=126  Identities=17%  Similarity=0.264  Sum_probs=104.3

Q ss_pred             CCcHHH---hhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCccccccc
Q 013373          202 STTVRS---IIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS  278 (444)
Q Consensus       202 ~~~v~d---i~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~  278 (444)
                      ..++++   +|.    .+++++.+++++.+|++.|.+++++++||+|++ ++++|++|..|+++.+.....     ....
T Consensus         7 ~~~v~~~~~~~~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~-----~~~~   76 (144)
T 2nyc_A            7 KIPIGDLNIITQ----DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIY-----NDLS   76 (144)
T ss_dssp             GSBGGGSSCCBC----SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC---------CC
T ss_pred             hcchhhcCCCCC----CCceEECCCCcHHHHHHHHHHcCcceeeEEcCC-CcEEEEEcHHHHHHHhccccc-----ccCC
Confidence            455777   444    678999999999999999999999999999976 899999999999988764310     0134


Q ss_pred             CcccccccCCCCCC-----CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          279 QPISDLGLPFMSSD-----EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       279 ~~v~~l~l~im~~~-----~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      .++.+    +|...     ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|+++.+.
T Consensus        77 ~~v~~----~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dil~~l~  140 (144)
T 2nyc_A           77 LSVGE----ALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL  140 (144)
T ss_dssp             SBHHH----HHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             ccHHH----HHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECC-CCCEEEEEEHHHHHHHHH
Confidence            57777    56531     5789999999999999999999999999997 799999999999998864

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.60  E-value=3.1e-15  Score=132.69  Aligned_cols=131  Identities=15%  Similarity=0.261  Sum_probs=106.9

Q ss_pred             CcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCC------------
Q 013373          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR------------  270 (444)
Q Consensus       203 ~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~------------  270 (444)
                      .+++++|...  .+++++.+++++.+|+++|.+++++++||+|++ ++++|+||..|+++++......            
T Consensus         4 ~~v~dim~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~   80 (180)
T 3sl7_A            4 YTVGDFMTPR--QNLHVVKPSTSVDDALELLVEKKVTGLPVIDDN-WTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDS   80 (180)
T ss_dssp             CBHHHHSEEG--GGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHTCC-------------------
T ss_pred             eeHHHhcCCC--CCceeeCCCCcHHHHHHHHHHcCCCeEEEECCC-CeEEEEEEHHHHHhhhhhccccCCcccccccccc
Confidence            4689999831  268999999999999999999999999999987 8999999999998643211000            


Q ss_pred             Cc---------ccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHh
Q 013373          271 DW---------FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  341 (444)
Q Consensus       271 ~~---------~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l  341 (444)
                      .+         +......++++    +|++ ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|+++.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~v~~----~m~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~vGiit~~dil~~~  154 (180)
T 3sl7_A           81 TWKTFNELQKLISKTYGKVVGD----LMTP-SPLVVRDSTNLEDAARLLLETKFRRLPVVDA-DGKLIGILTRGNVVRAA  154 (180)
T ss_dssp             CCCSHHHHHHHHHTTTTCBHHH----HSEE-SCCCEETTSBHHHHHHHHTTSTTCEEEEECT-TCBEEEEEEHHHHHHHH
T ss_pred             hhhhhHHHHHHHhccccccHHH----HhCC-CceEeCCCCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHH
Confidence            00         01123567888    7876 7899999999999999999999999999998 89999999999999887


Q ss_pred             c
Q 013373          342 L  342 (444)
Q Consensus       342 ~  342 (444)
                      .
T Consensus       155 ~  155 (180)
T 3sl7_A          155 L  155 (180)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.59  E-value=1.1e-14  Score=127.08  Aligned_cols=129  Identities=16%  Similarity=0.236  Sum_probs=105.6

Q ss_pred             CCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecC-CCCcEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013373          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEP-GTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  279 (444)
Q Consensus       201 ~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~-~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~  279 (444)
                      ...+++++|.    .+++++.+++++.+|++.|.+++++++||+|+ +.++++|++|..|+.+.+...... . ......
T Consensus        11 ~~~~v~dim~----~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~-~-~~~~~~   84 (164)
T 2pfi_A           11 HHVRVEHFMN----HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPS-R-APGHQQ   84 (164)
T ss_dssp             CSCBHHHHCB----CCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC---------CCCC
T ss_pred             cCCCHHHHcC----CCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccc-c-CCcccc
Confidence            3568999998    67999999999999999999999999999996 238999999999999887543110 0 011234


Q ss_pred             cccccccCCCCCCC------ceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          280 PISDLGLPFMSSDE------VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       280 ~v~~l~l~im~~~~------~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      ++.+    +|.. +      +.++.+++++.++++.|.+++++++||+|  +|+++|+||.+|+++.+.
T Consensus        85 ~v~~----~m~~-~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~l~Giit~~dil~~~~  146 (164)
T 2pfi_A           85 CLQD----ILAR-GCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS--RGRAVGCVSWVEMKKAIS  146 (164)
T ss_dssp             BHHH----HHHT-TCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHHHHHH
T ss_pred             hhhh----hhcc-cccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence            5666    4543 3      78999999999999999999999999999  689999999999998865

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.59  E-value=1.5e-14  Score=131.69  Aligned_cols=121  Identities=12%  Similarity=0.274  Sum_probs=108.8

Q ss_pred             CCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhC---CCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccc
Q 013373          199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY---RLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDI  275 (444)
Q Consensus       199 ~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~---~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~  275 (444)
                      .|...+++++|.    .+++++.++.|+.+|++.|.++   +++.+||+|++ ++++|+||.+|++..   .        
T Consensus        50 ~~~~~~v~~iM~----~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~-~~lvGivt~~dll~~---~--------  113 (205)
T 3kxr_A           50 QYSENEIGRYTD----HQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEA-DKYLGTVRRYDIFKH---E--------  113 (205)
T ss_dssp             HSCTTCGGGGCB----CCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTT-CBEEEEEEHHHHTTS---C--------
T ss_pred             CCCcchHHhhcc----CceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCC-CeEEEEEEHHHHHhC---C--------
Confidence            366778999998    6799999999999999999987   89999999986 899999999998642   1        


Q ss_pred             cccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          276 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       276 ~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                       ...++++    +|++ +++++.+++++.++++.|.+++++.+||+|+ +|+++|+||..|++..+.
T Consensus       114 -~~~~v~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~-~g~lvGiIT~~Dil~~i~  173 (205)
T 3kxr_A          114 -PHEPLIS----LLSE-DSRALTANTTLLDAAEAIEHSREIELPVIDD-AGELIGRVTLRAATALVR  173 (205)
T ss_dssp             -TTSBGGG----GCCS-SCCCEETTSCHHHHHHHHHTSSCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             -CcchHHH----HhcC-CCeEECCCCCHHHHHHHHHhcCCCEEEEEcC-CCeEEEEEEHHHHHHHHH
Confidence             3568899    7886 8999999999999999999999999999998 899999999999999875

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.58  E-value=2e-14  Score=124.75  Aligned_cols=127  Identities=18%  Similarity=0.325  Sum_probs=109.0

Q ss_pred             CcHHHhhhhcC--CCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCc
Q 013373          203 TTVRSIIKSYR--WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP  280 (444)
Q Consensus       203 ~~v~di~~~~~--~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~  280 (444)
                      .+++++|....  ..+++++.+++++.+|++.|.+++++++||.+ + ++++|++|..|+++.+......     ....+
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~~~~~~~~~~-----~~~~~   79 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-G-DDIAGIVTERDYARKVVLQERS-----SKATR   79 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-S-SSEEEEEEHHHHHHHSGGGTCC-----SSSCB
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-C-CEEEEEEEHHHHHHHHHhccCC-----ccccC
Confidence            46999998431  15579999999999999999999999999965 4 8999999999999887653211     14578


Q ss_pred             ccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373          281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (444)
Q Consensus       281 v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~  343 (444)
                      +.+    +|.+ ++.++.+++++.++++.|.+++++.+||+|  +|+++|+||.+|+++.+..
T Consensus        80 v~~----~m~~-~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~~~Giit~~dil~~l~~  135 (157)
T 4fry_A           80 VEE----IMTA-KVRYVEPSQSTDECMALMTEHRMRHLPVLD--GGKLIGLISIGDLVKSVIA  135 (157)
T ss_dssp             HHH----HSBS-SCCCBCTTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHT
T ss_pred             HHH----HcCC-CCcEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHHH
Confidence            888    7876 899999999999999999999999999999  6899999999999999875

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.58  E-value=8.4e-15  Score=137.09  Aligned_cols=140  Identities=17%  Similarity=0.267  Sum_probs=102.9

Q ss_pred             ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCC-CCeEEEEEeHHHHHHHhcCC----ccc-cc-
Q 013373          277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ-QKKIVGNVSIRDIRHLLLKP----ELF-SN-  349 (444)
Q Consensus       277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~-~~~lvGiIt~~Dll~~l~~~----~~~-~~-  349 (444)
                      ...++++    +|++ +++++.+++++.+|.++|.+++++++||||+. +++++|+||.+||++++...    ... .. 
T Consensus        11 ~~~~v~d----iMt~-~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~   85 (250)
T 2d4z_A           11 YNIQVGD----IMVR-DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAA   85 (250)
T ss_dssp             SSCBTTS----SSBS-SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCC
T ss_pred             CCCChHH----hcCC-CCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhh
Confidence            4568899    8987 89999999999999999999999999999863 26899999999999876421    000 00 


Q ss_pred             -------------------------ccc----------------------------------------------------
Q 013373          350 -------------------------FRQ----------------------------------------------------  352 (444)
Q Consensus       350 -------------------------~~~----------------------------------------------------  352 (444)
                                               +..                                                    
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (250)
T 2d4z_A           86 AEADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVAS  165 (250)
T ss_dssp             CCBCCC--------------------------------------------------------------------------
T ss_pred             hcccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCc
Confidence                                     000                                                    


Q ss_pred             -----CcHHH-------HhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373          353 -----LTVRD-------FMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  420 (444)
Q Consensus       353 -----~~v~~-------~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~  420 (444)
                           ++..+       .+.... +.........++++.++++|.++..+|...+++++||++. | +++||||+.||++
T Consensus       166 ~~~~~i~~~~~~~~~~~~l~~~V-dl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~-G-rLVGIVTrkDl~k  242 (250)
T 2d4z_A          166 RFEEMLTLEEIYRWEQREKNVVV-NFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM-G-KLVGVVALAEIQA  242 (250)
T ss_dssp             -CCSCCBHHHHHHHHHHHTTCBC-CTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHHH
T ss_pred             ccccccChhhhhhHHHHhcCcee-ccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEEC-C-EEEEEEEHHHHHH
Confidence                 00000       000000 0000012246889999999999999999999999999985 4 9999999999999


Q ss_pred             HhHc
Q 013373          421 CFIF  424 (444)
Q Consensus       421 ~l~~  424 (444)
                      ++.+
T Consensus       243 ai~~  246 (250)
T 2d4z_A          243 AIEG  246 (250)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            9874

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.58  E-value=1.1e-14  Score=126.58  Aligned_cols=130  Identities=19%  Similarity=0.226  Sum_probs=107.9

Q ss_pred             CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCE-EEEecCCCCcEEEEEeHHHHHHHhhcC-----CCCCc-
Q 013373          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN-VPIIEPGTPDIKNYITQSAVVQGLEGC-----KGRDW-  272 (444)
Q Consensus       200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~-lpVvd~~~~~l~Givt~~di~~~l~~~-----~~~~~-  272 (444)
                      +...+++++|.    .+++++.+++++.+|++.|.++++++ +||+|++  +++|++|..|+++.+...     ..... 
T Consensus        13 ~~~~~v~~im~----~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~--~~vGivt~~dl~~~~~~~~~~~~~~~~~~   86 (157)
T 1o50_A           13 MKVKDVCKLIS----LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN--KLVGMIPVMHLLKVSGFHFFGFIPKEELI   86 (157)
T ss_dssp             CBHHHHTTSSC----CCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT--EEEEEEEHHHHHHHHHHHHHCCCC-----
T ss_pred             hccccHhhccc----CCCceECCCCCHHHHHHHHHhCCCCccEEEEECC--EEEEEEEHHHHHHHHhhhHHhhhccHHHH
Confidence            44567899998    67999999999999999999999999 9999974  899999999999875410     00000 


Q ss_pred             ---ccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          273 ---FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       273 ---~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                         .......++.+    +|.+  ++++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|+++.+.
T Consensus        87 ~~~~~~~~~~~v~~----im~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~vGiit~~dll~~l~  152 (157)
T 1o50_A           87 RSSMKRLIAKNASE----IMLD--PVYVHMDTPLEEALKLMIDNNIQEMPVVDE-KGEIVGDLNSLEILLALW  152 (157)
T ss_dssp             --CCCCCSSCBHHH----HCBC--CCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred             HHHHHHHcCCcHHH----HcCC--CeEECCCCCHHHHHHHHHHCCCcEEEEEcC-CCEEEEEEEHHHHHHHHH
Confidence               01124567888    6874  889999999999999999999999999997 799999999999998865

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.57  E-value=2.4e-14  Score=127.61  Aligned_cols=135  Identities=10%  Similarity=0.203  Sum_probs=108.9

Q ss_pred             CCCCcHHHhhhhcCCCCceEe--eCCCCHHHHHHHHHhCCCCEEEEe--cCCCCcEEEEEeHHHHHHHhhcCCCC--Cc-
Q 013373          200 FKSTTVRSIIKSYRWAPFLPV--ATDDSMLSVLLLLSKYRLRNVPII--EPGTPDIKNYITQSAVVQGLEGCKGR--DW-  272 (444)
Q Consensus       200 ~~~~~v~di~~~~~~~~~v~v--~~~~sl~~a~~~l~~~~i~~lpVv--d~~~~~l~Givt~~di~~~l~~~~~~--~~-  272 (444)
                      ....+++++|......+++++  .+++++.+|+++|.+++++++||+  |++ ++++|+||..|+++.+......  .. 
T Consensus         8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~-~~lvGiit~~dl~~~~~~~~~~~~~~~   86 (185)
T 2j9l_A            8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRES-QRLVGFVLRRDLIISIENARKKQDGVV   86 (185)
T ss_dssp             -CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTT-CBEEEEEEHHHHHHHHHHHHTSCSCCC
T ss_pred             hccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCC-CeEEEEEEHHHHHHHHHhhcccCCCcc
Confidence            346789999983321227778  999999999999999999999999  555 8999999999999877542100  00 


Q ss_pred             ---------------ccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHH
Q 013373          273 ---------------FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI  337 (444)
Q Consensus       273 ---------------~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dl  337 (444)
                                     .......++.+    +|.+ ++.++.+++++.++++.|.+++++.+||+|  +|+++|+||.+|+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd--~g~~vGiit~~dl  159 (185)
T 2j9l_A           87 STSIIYFTEHSPPLPPYTPPTLKLRN----ILDL-SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH--NGRLLGIITKKDV  159 (185)
T ss_dssp             TTCEEECSSSCCCCCTTCCCCEECGG----GEES-SCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHH
T ss_pred             ccceeecccCCcccccccccCccHHH----hhCc-CCeEeCCCCCHHHHHHHHHhCCCcEEEEEE--CCEEEEEEEHHHH
Confidence                           00123457888    6876 799999999999999999999999999999  6899999999999


Q ss_pred             HHHhc
Q 013373          338 RHLLL  342 (444)
Q Consensus       338 l~~l~  342 (444)
                      ++.+.
T Consensus       160 l~~l~  164 (185)
T 2j9l_A          160 LKHIA  164 (185)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98875

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.53  E-value=5.5e-14  Score=131.52  Aligned_cols=135  Identities=14%  Similarity=0.163  Sum_probs=105.5

Q ss_pred             CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCC-CCcEEEEEeHHHHHHHhhcCC---CC--C--
Q 013373          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG-TPDIKNYITQSAVVQGLEGCK---GR--D--  271 (444)
Q Consensus       200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~-~~~l~Givt~~di~~~l~~~~---~~--~--  271 (444)
                      ....+|+|+|.    .+++++.+++++.+|.++|.+++++++||+|++ +++++|+||..|+++++....   ..  .  
T Consensus        10 ~~~~~v~diMt----~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~   85 (250)
T 2d4z_A           10 KYNIQVGDIMV----RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAA   85 (250)
T ss_dssp             CSSCBTTSSSB----SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCC
T ss_pred             cCCCChHHhcC----CCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhh
Confidence            34567999998    679999999999999999999999999999974 368999999999998764220   00  0  


Q ss_pred             -------------------------ccc----------------------------------------------------
Q 013373          272 -------------------------WFD----------------------------------------------------  274 (444)
Q Consensus       272 -------------------------~~~----------------------------------------------------  274 (444)
                                               ++.                                                    
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (250)
T 2d4z_A           86 AEADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVAS  165 (250)
T ss_dssp             CCBCCC--------------------------------------------------------------------------
T ss_pred             hcccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCc
Confidence                                     000                                                    


Q ss_pred             ----------------ccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHH
Q 013373          275 ----------------IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR  338 (444)
Q Consensus       275 ----------------~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll  338 (444)
                                      .....+|. |.-.+|++ .++++.+++++.++..+|...|++++||++  .|+++||||++||+
T Consensus       166 ~~~~~i~~~~~~~~~~~~l~~~Vd-l~~~~md~-sP~tv~~~tsL~~v~~LF~~lglr~l~V~~--~GrLVGIVTrkDl~  241 (250)
T 2d4z_A          166 RFEEMLTLEEIYRWEQREKNVVVN-FETCRIDQ-SPFQLVEGTSLQKTHTLFSLLGLDRAYVTS--MGKLVGVVALAEIQ  241 (250)
T ss_dssp             -CCSCCBHHHHHHHHHHHTTCBCC-TTSSCEEC-CSCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHH
T ss_pred             ccccccChhhhhhHHHHhcCceec-cccccccC-CCeEECCCCcHHHHHHHHHHhCCeEEEEEE--CCEEEEEEEHHHHH
Confidence                            00111220 00014776 789999999999999999999999999998  69999999999999


Q ss_pred             HHhc
Q 013373          339 HLLL  342 (444)
Q Consensus       339 ~~l~  342 (444)
                      +++.
T Consensus       242 kai~  245 (250)
T 2d4z_A          242 AAIE  245 (250)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9876

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.50  E-value=4.9e-14  Score=146.39  Aligned_cols=127  Identities=17%  Similarity=0.188  Sum_probs=109.8

Q ss_pred             cccCcccccccCCCCCCCceEecCC-CcHHHHHHHHHHcCCCeEeEEe-CCCCeEEEEEeHHHHHHHhcCCccccccccC
Q 013373          276 IASQPISDLGLPFMSSDEVITIQSN-ELILEAFKRMKDNNIGGIPVVE-GQQKKIVGNVSIRDIRHLLLKPELFSNFRQL  353 (444)
Q Consensus       276 ~~~~~v~~l~l~im~~~~~~~v~~~-~sl~ea~~~m~~~~~~~lpVvd-~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~  353 (444)
                      +...+|++    +|++ +++++.++ +++.+++++|.+++++++||+| + +++++|+||.+||++.+....   .....
T Consensus       381 l~~~~V~d----iM~~-~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~-~g~lvGiVt~~Dll~~l~~~~---~~~~~  451 (527)
T 3pc3_A          381 WWSLAIAE----LELP-APPVILKSDATVGEAIALMKKHRVDQLPVVDQD-DGSVLGVVGQETLITQIVSMN---RQQSD  451 (527)
T ss_dssp             TTTSBGGG----GCCC-CCSCCEETTCBHHHHHHHHHHHTCSEEEEECTT-TCCEEEEEEHHHHHHHHHHHC---CCTTS
T ss_pred             ccCCcHHH----hCcC-CCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECC-CCEEEEEEEHHHHHHHHHhcc---CcCCC
Confidence            34678899    7886 89999999 9999999999999999999999 6 789999999999998875321   12356


Q ss_pred             cHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCC----CCeEEEEEeHHHHHHHhHcCC
Q 013373          354 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGE----EAEVVGVITLRDVISCFIFEP  426 (444)
Q Consensus       354 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~----~~~lvGvIT~~DIl~~l~~e~  426 (444)
                      +|.++|..            +++++++++++.+++++|.++++  +||||++    + +++||||++||++++....
T Consensus       452 ~V~~im~~------------~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g-~lvGIVT~~Dll~~l~~~~  513 (527)
T 3pc3_A          452 PAIKALNK------------RVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKV-ELKALATKLDVTTFIAAGK  513 (527)
T ss_dssp             BGGGGEET------------TCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCE-EEEEEEEHHHHHHHHHTCC
T ss_pred             cHHHHhcC------------CCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCC-eEEEEEEHHHHHHHHHhcc
Confidence            89999984            89999999999999999977664  7999985    6 9999999999999998643

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.49  E-value=1.6e-13  Score=131.49  Aligned_cols=122  Identities=15%  Similarity=0.322  Sum_probs=109.5

Q ss_pred             CCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhC-----CCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCc
Q 013373          198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY-----RLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW  272 (444)
Q Consensus       198 ~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~-----~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~  272 (444)
                      ..+...+++++|.    .+++++.+++++.+|++.|.++     +++++||+|.+ ++++|+||..|++...        
T Consensus       132 l~~~~~~v~~iM~----~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~-~~lvGivt~~dll~~~--------  198 (286)
T 2oux_A          132 LHYEDETAGAIMT----TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRDLIVND--------  198 (286)
T ss_dssp             TTSCTTBHHHHCB----SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHHHTTSC--------
T ss_pred             hcCChHHHHHhCC----CCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCC-CeEEEEEEHHHHHcCC--------
Confidence            3567889999998    6799999999999999999987     88999999987 8999999999997531        


Q ss_pred             ccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          273 FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       273 ~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                          ...++.+    +|.+ +++++++++++.++++.|.+++++.+||+|+ +|+++|+||..|++..+.
T Consensus       199 ----~~~~v~~----im~~-~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIT~~Dil~~i~  258 (286)
T 2oux_A          199 ----DDTLIAD----ILNE-RVISVHVGDDQEDVAQTIRDYDFLAVPVTDY-DDHLLGIVTVDDIIDVID  258 (286)
T ss_dssp             ----TTSBHHH----HSBS-CCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred             ----CCCcHHH----HcCC-CCeeecCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHHHHH
Confidence                3568888    7876 8999999999999999999999999999998 899999999999998875

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.48  E-value=8.1e-14  Score=142.58  Aligned_cols=121  Identities=21%  Similarity=0.325  Sum_probs=108.5

Q ss_pred             ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHc-----CCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccc
Q 013373          277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDN-----NIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR  351 (444)
Q Consensus       277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~-----~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~  351 (444)
                      ...++++    +|++ +++++++++++.++++.|.++     +++++||+|+ +++++|++|.+|++..  .       .
T Consensus       153 ~~~~v~~----iM~~-~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~-~~~lvGiVt~~Dll~~--~-------~  217 (473)
T 2zy9_A          153 EEDEAGG----LMTP-EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE-KGRLKGVLSLRDLIVA--D-------P  217 (473)
T ss_dssp             CTTBSTT----TCBS-CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECT-TSBEEEEEEHHHHHHS--C-------T
T ss_pred             CCCCHHH----hCCC-CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECC-CCcEEEEEEHHHHhcC--C-------C
Confidence            4567888    7987 899999999999999999986     5799999998 7999999999999864  1       2


Q ss_pred             cCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013373          352 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  425 (444)
Q Consensus       352 ~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e  425 (444)
                      +.++.++|++            +++++++++++.++++.|.+++.+.+||||++| +++|+||..||++.+..+
T Consensus       218 ~~~v~dim~~------------~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g-~lvGiIT~~Dil~~i~~e  278 (473)
T 2zy9_A          218 RTRVAEIMNP------------KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEG-RLVGIVTVDDVLDVLEAE  278 (473)
T ss_dssp             TSBGGGTSBS------------SCCCEESSSBHHHHHHHHHHHTCSEEEEECTTS-BEEEEEEHHHHHHHHHHH
T ss_pred             CCcHHHHhCC------------CCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCC-EEEEEEehHhhHHHHHHH
Confidence            5689999974            889999999999999999999999999999988 999999999999988754

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.47  E-value=1.5e-13  Score=142.83  Aligned_cols=127  Identities=9%  Similarity=0.186  Sum_probs=109.1

Q ss_pred             CCCCCcHHHhhhhcCCCCceEeeCC-CCHHHHHHHHHhCCCCEEEEec-CCCCcEEEEEeHHHHHHHhhcCCCCCccccc
Q 013373          199 PFKSTTVRSIIKSYRWAPFLPVATD-DSMLSVLLLLSKYRLRNVPIIE-PGTPDIKNYITQSAVVQGLEGCKGRDWFDII  276 (444)
Q Consensus       199 ~~~~~~v~di~~~~~~~~~v~v~~~-~sl~~a~~~l~~~~i~~lpVvd-~~~~~l~Givt~~di~~~l~~~~~~~~~~~~  276 (444)
                      ++...+|+++|.    .+++++.++ +++.+|+++|.+++++++||+| ++ ++++|+||..||++.+.....      .
T Consensus       380 ~l~~~~V~diM~----~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~-g~lvGiVt~~Dll~~l~~~~~------~  448 (527)
T 3pc3_A          380 WWWSLAIAELEL----PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDD-GSVLGVVGQETLITQIVSMNR------Q  448 (527)
T ss_dssp             TTTTSBGGGGCC----CCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTT-CCEEEEEEHHHHHHHHHHHCC------C
T ss_pred             cccCCcHHHhCc----CCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCC-CEEEEEEEHHHHHHHHHhccC------c
Confidence            355688999998    679999999 9999999999999999999999 55 899999999999988765321      1


Q ss_pred             ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCC---CCeEEEEEeHHHHHHHhcC
Q 013373          277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ---QKKIVGNVSIRDIRHLLLK  343 (444)
Q Consensus       277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~---~~~lvGiIt~~Dll~~l~~  343 (444)
                      ...+|.+    +|++ +++++.+++++.+++++|.++++  +||+|++   +++++|+||.+||++++.+
T Consensus       449 ~~~~V~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~  511 (527)
T 3pc3_A          449 QSDPAIK----ALNK-RVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAA  511 (527)
T ss_dssp             TTSBGGG----GEET-TCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHT
T ss_pred             CCCcHHH----HhcC-CCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHh
Confidence            4578999    7886 89999999999999999976664  7999962   2899999999999999875

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.46  E-value=4.1e-13  Score=128.03  Aligned_cols=121  Identities=15%  Similarity=0.326  Sum_probs=107.2

Q ss_pred             CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhC-----CCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCccc
Q 013373          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY-----RLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD  274 (444)
Q Consensus       200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~-----~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~  274 (444)
                      +...+++++|.    .+++++.+++++.+|++.|.++     ++.++||+|.+ ++++|+||.+|++..   .       
T Consensus       132 ~~~~~v~~iM~----~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~-~~lvGivt~~dll~~---~-------  196 (278)
T 2yvy_A          132 YEEDEAGGLMT----PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVA---D-------  196 (278)
T ss_dssp             SCTTBGGGTCB----SCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTT-CBEEEEEEHHHHHHS---C-------
T ss_pred             CCcchHHhhcC----CCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCC-CCEEEEEEHHHHhcC---C-------
Confidence            55678999998    5799999999999999999886     78999999987 899999999999753   1       


Q ss_pred             ccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373          275 IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (444)
Q Consensus       275 ~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~  343 (444)
                        ...++.+    +|.+ +++++++++++.++++.|.+++.+.+||+|+ +|+++|+||..|++..+..
T Consensus       197 --~~~~v~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGivT~~Dil~~i~~  257 (278)
T 2yvy_A          197 --PRTRVAE----IMNP-KVVYVRTDTDQEEVARLMADYDFTVLPVVDE-EGRLVGIVTVDDVLDVLEA  257 (278)
T ss_dssp             --TTCBSTT----TSBS-SCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHC--
T ss_pred             --CCCcHHH----HhCC-CCeEEeCCCCHHHHHHHHHhcCCCEEEEEeC-CCeEEEEEEHHHHHHHHHH
Confidence              3468889    7876 8999999999999999999999999999998 8999999999999988753

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.43  E-value=2.7e-14  Score=151.23  Aligned_cols=131  Identities=14%  Similarity=0.087  Sum_probs=102.3

Q ss_pred             cCcccccccCCCCC-CCceEecCCCcHHHHHHHHH-HcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccc------
Q 013373          278 SQPISDLGLPFMSS-DEVITIQSNELILEAFKRMK-DNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSN------  349 (444)
Q Consensus       278 ~~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~-~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~------  349 (444)
                      +.++++    +|++ +++.++++++++.++.+.|. +++++++||+|+ +++++|+||.+|+++.+........      
T Consensus       452 ~~~V~d----iM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~-~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~  526 (632)
T 3org_A          452 EMTARE----IMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDA-NGYLLGAISRKEIVDRLQHVLEDVPEPIAGH  526 (632)
T ss_dssp             TSBHHH----HCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCT-TCBBCCEESHHHHTTTTTTC-----------
T ss_pred             cCcHHH----HhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEec-CCeEEEEEEHHHHHHHHHHHhhhcccccccc
Confidence            467888    7872 27899999999999999999 799999999998 8999999999999887653210000      


Q ss_pred             --------------ccc------------------------CcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHH
Q 013373          350 --------------FRQ------------------------LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSL  391 (444)
Q Consensus       350 --------------~~~------------------------~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m  391 (444)
                                    ...                        .++.++|+            ++++++++++++.++++.|
T Consensus       527 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt------------~~pitV~~~~~l~ea~~~M  594 (632)
T 3org_A          527 RTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCD------------VSPIVVTSYSLVRQLHFLF  594 (632)
T ss_dssp             --------------------------------------------CCSCC------------CCCCEEETTCBHHHHHHHH
T ss_pred             cceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhc------------CCCceecCCCcHHHHHHHH
Confidence                          000                        01333343            4789999999999999999


Q ss_pred             HhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCC
Q 013373          392 ASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPP  427 (444)
Q Consensus       392 ~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~  427 (444)
                      .+++++++||+ ++| +++||||++||++.+..+..
T Consensus       595 ~~~~i~~lpVv-e~G-~lvGIVT~~Dll~~~~~~~~  628 (632)
T 3org_A          595 VMLMPSMIYVT-ERG-KLVGIVEREDVAYGYSNSLE  628 (632)
T ss_dssp             HHTCCSEEEEE-ETT-EEEEEEEGGGTEECCCC---
T ss_pred             HhcCCCEEEEE-ECC-EEEEEEehhhHHHHHhhhHH
Confidence            99999999999 566 99999999999988776433

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.36  E-value=4e-12  Score=130.83  Aligned_cols=116  Identities=23%  Similarity=0.390  Sum_probs=102.8

Q ss_pred             CCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCC-CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCC
Q 013373          288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ-QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTT  366 (444)
Q Consensus       288 im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~-~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~  366 (444)
                      .|.. +++++.+++++.+++++|.+++++++||+|+. +++++|+||.+|++..    .    ....++.++|++     
T Consensus       118 ~m~~-d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~----~----~~~~~V~~vM~~-----  183 (511)
T 3usb_A          118 GVIS-DPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFI----Q----DYSIKISDVMTK-----  183 (511)
T ss_dssp             CSSS-SCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTC----C----CSSSBHHHHCCC-----
T ss_pred             cccc-CCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhh----c----cCCCcHHHhccc-----
Confidence            5665 78999999999999999999999999999851 4799999999999641    1    136689999983     


Q ss_pred             CCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          367 PDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       367 ~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                            .+++++++++++.+++++|.+++++.+||||+++ +++|+||..||++.+..
T Consensus       184 ------~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g-~l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          184 ------EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNG-VLQGLITIKDIEKVIEF  234 (511)
T ss_dssp             ------CCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTS-BEEEEEEHHHHHHHHHC
T ss_pred             ------CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCC-CEeeeccHHHHHHhhhc
Confidence                  3789999999999999999999999999999998 99999999999999875

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.35  E-value=1.8e-11  Score=125.92  Aligned_cols=156  Identities=21%  Similarity=0.300  Sum_probs=121.7

Q ss_pred             CCceEeeCCCCHHHHHHHHHhCCCCEEEEecC--CCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCC
Q 013373          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEP--GTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD  292 (444)
Q Consensus       215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~--~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~  292 (444)
                      .+++++.+++++.+++++|.+++++++||+|+  + ++++|+||.+|+..  ..    .     ...++.+    +|++.
T Consensus       121 ~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~-~~lvGiVt~rDl~~--~~----~-----~~~~V~~----vM~~~  184 (511)
T 3usb_A          121 SDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDE-RKLVGIITNRDMRF--IQ----D-----YSIKISD----VMTKE  184 (511)
T ss_dssp             SSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTT-CBEEEEEEHHHHTT--CC----C-----SSSBHHH----HCCCC
T ss_pred             cCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCC-CEEEEEEEehHhhh--hc----c-----CCCcHHH----hcccC
Confidence            56889999999999999999999999999997  6 89999999999954  11    1     4578899    78754


Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      +++++++++++.+++++|.+++++.+||+|+ +|+++|+||.+|+++.+..+..        +.+.+..          .
T Consensus       185 ~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe-~g~l~GiIT~~Dil~~~~~p~a--------~~D~~~r----------l  245 (511)
T 3usb_A          185 QLITAPVGTTLSEAEKILQKYKIEKLPLVDN-NGVLQGLITIKDIEKVIEFPNS--------AKDKQGR----------L  245 (511)
T ss_dssp             CCCCEETTCCHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHHCTTC--------CBCTTSC----------B
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEeC-CCCEeeeccHHHHHHhhhcccc--------hhhhccc----------e
Confidence            7899999999999999999999999999998 8999999999999998764221        1122211          0


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCC
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGE  405 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~  405 (444)
                      .....+.......+.++.+.+.+++.++|-..+
T Consensus       246 ~V~aavg~~~d~~era~aLveaGvd~I~Id~a~  278 (511)
T 3usb_A          246 LVGAAVGVTADAMTRIDALVKASVDAIVLDTAH  278 (511)
T ss_dssp             CCEEEECSSTTHHHHHHHHHHTTCSEEEEECSC
T ss_pred             eeeeeeeeccchHHHHHHHHhhccceEEecccc
Confidence            122344445555666777888888877665443

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.34  E-value=4.4e-12  Score=129.69  Aligned_cols=122  Identities=15%  Similarity=0.322  Sum_probs=108.6

Q ss_pred             CCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhC-----CCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCc
Q 013373          198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY-----RLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW  272 (444)
Q Consensus       198 ~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~-----~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~  272 (444)
                      ..+...+++++|.    .+++++.+++++.+|++.|.++     +++++||+|++ ++++|++|.+|++..   .     
T Consensus       150 l~~~~~~v~~iM~----~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~-~~lvGiVt~~Dll~~---~-----  216 (473)
T 2zy9_A          150 ARYEEDEAGGLMT----PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVA---D-----  216 (473)
T ss_dssp             HTSCTTBSTTTCB----SCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTT-SBEEEEEEHHHHHHS---C-----
T ss_pred             hcCCCCCHHHhCC----CCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCC-CcEEEEEEHHHHhcC---C-----
Confidence            3456778999998    6799999999999999999886     58999999987 899999999999762   1     


Q ss_pred             ccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          273 FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       273 ~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                          .+.++++    +|++ +++++++++++.++++.|.+++.+.+||+|+ +|+++|+||..|+++.+.
T Consensus       217 ----~~~~v~d----im~~-~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe-~g~lvGiIT~~Dil~~i~  276 (473)
T 2zy9_A          217 ----PRTRVAE----IMNP-KVVYVRTDTDQEEVARLMADYDFTVLPVVDE-EGRLVGIVTVDDVLDVLE  276 (473)
T ss_dssp             ----TTSBGGG----TSBS-SCCCEESSSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             ----CCCcHHH----HhCC-CCeEEeCCCcHHHHHHHHHhcCCcEEEEEcC-CCEEEEEEehHhhHHHHH
Confidence                3568999    7876 8999999999999999999999999999998 899999999999998865

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.33  E-value=1.3e-12  Score=138.43  Aligned_cols=132  Identities=16%  Similarity=0.071  Sum_probs=105.4

Q ss_pred             CCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHH-hCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCc-------
Q 013373          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLS-KYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW-------  272 (444)
Q Consensus       201 ~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~-~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~-------  272 (444)
                      ...+|+|+|...  ++++++++++++.++.+.|. +++++++||+|++ ++++|+||.+|+.+.+........       
T Consensus       451 ~~~~V~diM~p~--~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~-~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~  527 (632)
T 3org_A          451 PEMTAREIMHPI--EGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDAN-GYLLGAISRKEIVDRLQHVLEDVPEPIAGHR  527 (632)
T ss_dssp             TTSBHHHHCBCT--TTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTT-CBBCCEESHHHHTTTTTTC------------
T ss_pred             ccCcHHHHhhcC--CCceEecCCCcHHHHHHHHHhcCCcceEEEEecC-CeEEEEEEHHHHHHHHHHHhhhccccccccc
Confidence            567899999832  56899999999999999999 7999999999986 899999999999987654310000       


Q ss_pred             -------------ccccc---------------------cCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeE
Q 013373          273 -------------FDIIA---------------------SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGI  318 (444)
Q Consensus       273 -------------~~~~~---------------------~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~l  318 (444)
                                   .....                     ..++++    +|++ +++++++++++.++.+.|.+++++++
T Consensus       528 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~----iMt~-~pitV~~~~~l~ea~~~M~~~~i~~l  602 (632)
T 3org_A          528 TLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVV----PCDV-SPIVVTSYSLVRQLHFLFVMLMPSMI  602 (632)
T ss_dssp             -------------------------------------------CC----SCCC-CCCEEETTCBHHHHHHHHHHTCCSEE
T ss_pred             ceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccch----hhcC-CCceecCCCcHHHHHHHHHhcCCCEE
Confidence                         00000                     013666    7986 88999999999999999999999999


Q ss_pred             eEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          319 PVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       319 pVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      ||++  +|+++|+||.+|+++.+.
T Consensus       603 pVve--~G~lvGIVT~~Dll~~~~  624 (632)
T 3org_A          603 YVTE--RGKLVGIVEREDVAYGYS  624 (632)
T ss_dssp             EEEE--TTEEEEEEEGGGTEECCC
T ss_pred             EEEE--CCEEEEEEehhhHHHHHh
Confidence            9994  799999999999977654

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.32  E-value=8.1e-12  Score=128.65  Aligned_cols=115  Identities=21%  Similarity=0.371  Sum_probs=103.3

Q ss_pred             CCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEe--CCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCC
Q 013373          288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVE--GQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPT  365 (444)
Q Consensus       288 im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd--~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~  365 (444)
                      +|.+ +++++.+++++.++++.|.+++++++||+|  + +++++|+||.+|++....        ...++.++|+.    
T Consensus        95 im~~-~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~-~~~lvGivt~~Dl~~~~~--------~~~~v~~im~~----  160 (491)
T 1zfj_A           95 GVII-DPFFLTPEHKVSEAEELMQRYRISGVPIVETLA-NRKLVGIITNRDMRFISD--------YNAPISEHMTS----  160 (491)
T ss_dssp             TTSS-SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTT-TCBEEEEEEHHHHHHCSC--------SSSBTTTSCCC----
T ss_pred             cCcC-CCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCC-CCEEEEEEEHHHHhhhcc--------CCCcHHHHcCC----
Confidence            6886 899999999999999999999999999999  6 899999999999986421        35578888872    


Q ss_pred             CCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          366 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       366 ~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                             ++++++++++++.++++.|.+++++++||||+++ +++|+||..||++.+..
T Consensus       161 -------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g-~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          161 -------EHLVTAAVGTDLETAERILHEHRIEKLPLVDNSG-RLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             -------SCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTS-BEEEEEEHHHHHHHHHC
T ss_pred             -------CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-cEEEEEEHHHHHHHHhc
Confidence                   2688999999999999999999999999999988 99999999999998874

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.31  E-value=5.2e-13  Score=136.96  Aligned_cols=116  Identities=22%  Similarity=0.280  Sum_probs=89.5

Q ss_pred             CCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCC
Q 013373          288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP  367 (444)
Q Consensus       288 im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~  367 (444)
                      +|.. +++++.+++++.+++++|.+++++++||+|+ +++++|+||.+|++..  .      ....++.++|++.     
T Consensus        94 ~m~~-d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~-~~~lvGiVt~rDL~~~--~------~~~~~v~diM~p~-----  158 (496)
T 4fxs_A           94 GVVT-HPVTVRPEQTIADVMELTHYHGFAGFPVVTE-NNELVGIITGRDVRFV--T------DLTKSVAAVMTPK-----  158 (496)
T ss_dssp             --CB-CCCCBCSSSBHHHHHHHHTSSCCCEEEEECS-SSBEEEEEEHHHHTTC--C------CTTSBGGGTSEEG-----
T ss_pred             cccc-CceEECCCCCHHHHHHHHHHcCCcEEEEEcc-CCEEEEEEEHHHHhhc--c------cCCCcHHHHhcCC-----
Confidence            6775 8899999999999999999999999999998 7999999999999622  1      1356899999820     


Q ss_pred             CCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          368 DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       368 ~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                           ++++++++++++.+++++|.+++++.+||||++| +++|+||+.||++....
T Consensus       159 -----~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G-~l~GiIT~~DIl~~~~~  209 (496)
T 4fxs_A          159 -----ERLATVKEGATGAEVQEKMHKARVEKILVVNDEF-QLKGMITAKDFHKAESK  209 (496)
T ss_dssp             -----GGCCEEECC----CGGGTCC---CCCEEEECTTS-BCCEEECCC-----CCC
T ss_pred             -----CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-CEEEeehHhHHHHhhcc
Confidence                 2589999999999999999999999999999998 99999999999997643

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.31  E-value=2e-13  Score=140.56  Aligned_cols=117  Identities=11%  Similarity=0.177  Sum_probs=0.4

Q ss_pred             CCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCC---CeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCC
Q 013373          289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ---KKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPT  365 (444)
Q Consensus       289 m~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~---~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~  365 (444)
                      |.+ +++++.+++++.+++++|.+++++++||+|+ +   ++++|+||.+|+++. .  .    ....++.++|++.   
T Consensus       103 M~~-~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~-~~~~g~lvGiVt~~Dl~~~-~--~----~~~~~V~diM~~~---  170 (503)
T 1me8_A          103 FVV-SDSNVKPDQTFADVLAISQRTTHNTVAVTDD-GTPHGVLLGLVTQRDYPID-L--T----QTETKVSDMMTPF---  170 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccc-CCeEECCCCcHHHHHHHHHHcCceEEEEEEC-CCcCCeEEEEEEHHHHHhh-h--c----cccCcHHHHhCCC---
Confidence            776 8999999999999999999999999999997 5   899999999999864 1  1    1356899999840   


Q ss_pred             CCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013373          366 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  425 (444)
Q Consensus       366 ~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e  425 (444)
                             .+++++++++++.+++++|.+++++.+||||+++ +++|+||.+||++.+...
T Consensus       171 -------~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g-~lvGiIT~~Dil~~~~~~  222 (503)
T 1me8_A          171 -------SKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQ-HLRYIVFRKDYDRSQVCH  222 (503)
T ss_dssp             -----------------------------------------------------------C
T ss_pred             -------CCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEecHHHHhhhcc
Confidence                   1289999999999999999999999999999987 999999999999998753

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.24  E-value=7.8e-13  Score=136.22  Aligned_cols=152  Identities=13%  Similarity=0.148  Sum_probs=19.1

Q ss_pred             CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCC--CCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCC
Q 013373          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD  292 (444)
Q Consensus       215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~--~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~  292 (444)
                      .+++++.+++++.+|+++|.+++++++||+|++  .++++|+||.+|+... ..         ....++++    +|++ 
T Consensus       105 ~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~-~~---------~~~~~V~d----iM~~-  169 (503)
T 1me8_A          105 VSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID-LT---------QTETKVSD----MMTP-  169 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh-hc---------cccCcHHH----HhCC-
Confidence            568899999999999999999999999999864  2689999999999753 11         14568899    7886 


Q ss_pred             C--ceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCC
Q 013373          293 E--VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSG  370 (444)
Q Consensus       293 ~--~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~  370 (444)
                      +  ++++++++++.+++++|.+++++.+||+|+ +++++|+||.+||++.+..+..        ..+.+..         
T Consensus       170 ~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe-~g~lvGiIT~~Dil~~~~~~~~--------~~d~~~~---------  231 (503)
T 1me8_A          170 FSKLVTAHQDTKLSEANKIIWEKKLNALPIIDD-DQHLRYIVFRKDYDRSQVCHNE--------LVDSQKR---------  231 (503)
T ss_dssp             -----------------------------------------------------CCC--------CBCTTSC---------
T ss_pred             CCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEecHHHHhhhcccc--------hhccccc---------
Confidence            5  999999999999999999999999999998 8999999999999988653211        1111110         


Q ss_pred             CCCCCeEecCCCCHHHHHHHHHhcCCCEEEE
Q 013373          371 KVNPPITCKLESTLGSVIHSLASKSVHRIYV  401 (444)
Q Consensus       371 ~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V  401 (444)
                       ......+.. ....+.++.|.+.+++.+.|
T Consensus       232 -l~v~a~v~~-~~~~e~~~~l~e~gv~~l~V  260 (503)
T 1me8_A          232 -YLVGAGINT-RDFRERVPALVEAGADVLCI  260 (503)
T ss_dssp             -BCCEEEECS-SSHHHHHHHHHHHTCSEEEE
T ss_pred             -cccccccCc-hhHHHHHHHHHhhhccceEE
Confidence             001133445 56667788888889886554

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.24  E-value=7.1e-13  Score=135.85  Aligned_cols=115  Identities=23%  Similarity=0.351  Sum_probs=0.4

Q ss_pred             CCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCC
Q 013373          288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP  367 (444)
Q Consensus       288 im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~  367 (444)
                      +|.. +++++++++++.+++++|.+++++++||+|  +++++|+||.+|++...        ....++.++|++.     
T Consensus        93 ~m~~-~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd--~g~lvGIVt~rDl~~~~--------~~~~~V~~vMtp~-----  156 (490)
T 4avf_A           93 AIVR-DPVTVTPSTKIIELLQMAREYGFSGFPVVE--QGELVGIVTGRDLRVKP--------NAGDTVAAIMTPK-----  156 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             Cccc-CceEeCCCCcHHHHHHHHHHhCCCEEEEEE--CCEEEEEEEhHHhhhcc--------ccCCcHHHHhccC-----
Confidence            6775 789999999999999999999999999999  68999999999996431        1356899999820     


Q ss_pred             CCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          368 DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       368 ~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                           .+++++++++++.+++++|.+++++.+||||+++ +++|+||+.||++....
T Consensus       157 -----~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g-~lvGiIT~~Dil~~~~~  207 (490)
T 4avf_A          157 -----DKLVTAREGTPLEEMKAKLYENRIEKMLVVDENF-YLRGLVTFRDIEKAKTY  207 (490)
T ss_dssp             --------------------------------------------------------C
T ss_pred             -----CCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCC-cEEEEEehHHhhhhccC
Confidence                 2689999999999999999999999999999988 99999999999998654

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.23  E-value=8.7e-13  Score=135.95  Aligned_cols=117  Identities=24%  Similarity=0.411  Sum_probs=6.3

Q ss_pred             CCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCC
Q 013373          288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP  367 (444)
Q Consensus       288 im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~  367 (444)
                      +|.+ +++++.+++++.++++.|.+++++.+||+|+ +++++|+||.+|+++..        ....++.++|++.     
T Consensus       100 iM~~-~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-~~~lvGivt~~Dl~~~~--------~~~~~v~~im~~~-----  164 (494)
T 1vrd_A          100 GIIY-DPITVTPDMTVKEAIDLMAEYKIGGLPVVDE-EGRLVGLLTNRDVRFEK--------NLSKKIKDLMTPR-----  164 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCcc-CCeEECCCCCHHHHHHHHHHcCceEEEEEcC-CCEEEEEEEHHHHHhhc--------CCCCcHHHHhCCC-----
Confidence            6876 8999999999999999999999999999997 78999999999998631        1256899999720     


Q ss_pred             CCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013373          368 DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  425 (444)
Q Consensus       368 ~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e  425 (444)
                           .+++++++++++.+++++|.+++++++||||+++ +++|+||..||++.+..+
T Consensus       165 -----~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g-~lvGiIt~~Dll~~~~~~  216 (494)
T 1vrd_A          165 -----EKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDN-KLVGLITIKDIMSVIEHP  216 (494)
T ss_dssp             --------------------------------------------------CHHHHTCT
T ss_pred             -----CCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCC-eEEEEEEHHHHHhhhccc
Confidence                 2789999999999999999999999999999987 999999999999998753

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.20  E-value=1.6e-12  Score=130.73  Aligned_cols=110  Identities=15%  Similarity=0.265  Sum_probs=0.4

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCC--CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQ--QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSG  370 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~--~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~  370 (444)
                      +++++.++.++.+++++|.+++++.+||+++.  +++++||||.+|+...  +       ...+|.++|++         
T Consensus       147 dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~--d-------~~~~V~evMT~---------  208 (556)
T 4af0_A          147 DPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ--D-------AETPIKSVMTT---------  208 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc--c-------cceEhhhhccc---------
Confidence            68999999999999999999999999999852  4789999999998652  1       25689999995         


Q ss_pred             CCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          371 KVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       371 ~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                         ++++++...++.+|.++|.++++..+||||+++ +++|+||+.|+++.-..
T Consensus       209 ---~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g-~LvGlIT~kDi~k~~~~  258 (556)
T 4af0_A          209 ---EVVTGSSPITLEKANSLLRETKKGKLPIVDSNG-HLVSLVARSDLLKNQNY  258 (556)
T ss_dssp             -----------------------------------------------------C
T ss_pred             ---ceEEecCCCCHHHHHHHHHHccccceeEEccCC-cEEEEEEechhhhhhhC
Confidence               799999999999999999999999999999998 99999999999987654

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.18  E-value=1.4e-10  Score=119.42  Aligned_cols=118  Identities=19%  Similarity=0.321  Sum_probs=103.3

Q ss_pred             HHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEec--CCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCccc
Q 013373          205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIE--PGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (444)
Q Consensus       205 v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd--~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~  282 (444)
                      +.++|.    .+++++.+++++.+++++|.+++++++||+|  ++ ++++|+||.+|++...  .         ...+++
T Consensus        92 ~~~im~----~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~-~~lvGivt~~Dl~~~~--~---------~~~~v~  155 (491)
T 1zfj_A           92 SENGVI----IDPFFLTPEHKVSEAEELMQRYRISGVPIVETLAN-RKLVGIITNRDMRFIS--D---------YNAPIS  155 (491)
T ss_dssp             HTTTTS----SSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTT-CBEEEEEEHHHHHHCS--C---------SSSBTT
T ss_pred             HHhcCc----CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCC-CEEEEEEEHHHHhhhc--c---------CCCcHH
Confidence            456676    5788999999999999999999999999999  55 8999999999997531  1         356888


Q ss_pred             ccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373          283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (444)
Q Consensus       283 ~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~  343 (444)
                      +    +|++.+++++++++++.++++.|.+++++.+||+|+ +++++|++|..|+++.+..
T Consensus       156 ~----im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~-~g~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          156 E----HMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDN-SGRLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             T----SCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECT-TSBEEEEEEHHHHHHHHHC
T ss_pred             H----HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEHHHHHHHHhc
Confidence            9    787436889999999999999999999999999998 8999999999999998764

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.16  E-value=1.9e-11  Score=125.30  Aligned_cols=112  Identities=15%  Similarity=0.231  Sum_probs=87.5

Q ss_pred             CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCC-CCC
Q 013373          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMS-SDE  293 (444)
Q Consensus       215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~-~~~  293 (444)
                      .+++++.+++++.+++++|.+++++++||+|++ ++++|+||.+|+..  ..         -...++.+    +|+ .++
T Consensus        97 ~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~-~~lvGiVt~rDL~~--~~---------~~~~~v~d----iM~p~~~  160 (496)
T 4fxs_A           97 THPVTVRPEQTIADVMELTHYHGFAGFPVVTEN-NELVGIITGRDVRF--VT---------DLTKSVAA----VMTPKER  160 (496)
T ss_dssp             BCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSS-SBEEEEEEHHHHTT--CC---------CTTSBGGG----TSEEGGG
T ss_pred             cCceEECCCCCHHHHHHHHHHcCCcEEEEEccC-CEEEEEEEHHHHhh--cc---------cCCCcHHH----HhcCCCC
Confidence            568999999999999999999999999999986 89999999999852  11         14568899    787 435


Q ss_pred             ceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373          294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (444)
Q Consensus       294 ~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~  343 (444)
                      ++++++++++.+++++|.+++++.+||+|+ +|+++|+||.+|+++....
T Consensus       161 ~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe-~G~l~GiIT~~DIl~~~~~  209 (496)
T 4fxs_A          161 LATVKEGATGAEVQEKMHKARVEKILVVND-EFQLKGMITAKDFHKAESK  209 (496)
T ss_dssp             CCEEECC----CGGGTCC---CCCEEEECT-TSBCCEEECCC-----CCC
T ss_pred             CEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEeehHhHHHHhhcc
Confidence            899999999999999999999999999998 8999999999999987543

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.13  E-value=1.6e-11  Score=125.77  Aligned_cols=117  Identities=18%  Similarity=0.284  Sum_probs=1.7

Q ss_pred             HHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCccccc
Q 013373          205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDL  284 (444)
Q Consensus       205 v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l  284 (444)
                      ++++|.    .+++++.+++++.+|+++|.+++++++||+| + ++++|+||.+|+....           ....++.+ 
T Consensus        90 ~~~~m~----~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~-g~lvGIVt~rDl~~~~-----------~~~~~V~~-  151 (490)
T 4avf_A           90 HETAIV----RDPVTVTPSTKIIELLQMAREYGFSGFPVVE-Q-GELVGIVTGRDLRVKP-----------NAGDTVAA-  151 (490)
T ss_dssp             CCC-----------------------------------------------------------------------------
T ss_pred             cccCcc----cCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-C-CEEEEEEEhHHhhhcc-----------ccCCcHHH-
Confidence            345555    5688999999999999999999999999999 5 8999999999985211           14568999 


Q ss_pred             ccCCCC-CCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373          285 GLPFMS-SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (444)
Q Consensus       285 ~l~im~-~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~  343 (444)
                         +|+ .++++++++++++.+++++|.+++++.+||+|+ +++++|+||.+|+++....
T Consensus       152 ---vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe-~g~lvGiIT~~Dil~~~~~  207 (490)
T 4avf_A          152 ---IMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDE-NFYLRGLVTFRDIEKAKTY  207 (490)
T ss_dssp             -----------------------------------------------------------C
T ss_pred             ---HhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEehHHhhhhccC
Confidence               788 336899999999999999999999999999998 8999999999999988643

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.07  E-value=3.2e-12  Score=132.28  Aligned_cols=123  Identities=17%  Similarity=0.224  Sum_probs=70.3

Q ss_pred             cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCC--CCeEEEEEeHHHHHHHhcCCccccccccCcHHH
Q 013373          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ--QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRD  357 (444)
Q Consensus       280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~--~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~  357 (444)
                      .+.+    +|.. +++++.+++++.+++++|.+++++.+||+|+.  +++++|+||.+|+++...      .....++.+
T Consensus       109 ~~~~----im~~-~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~------~~~~~~v~~  177 (514)
T 1jcn_A          109 NFEQ----GFIT-DPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAE------KDHTTLLSE  177 (514)
T ss_dssp             TCCT----TSCS-SCCCCCC-----------------CEESCC--------CCEECTTTTC-------------------
T ss_pred             hhhh----cccc-CCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhh------ccCCCCHHH
Confidence            4566    6776 78899999999999999999999999999862  389999999999976421      013568899


Q ss_pred             HhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          358 FMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       358 ~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      +|++          ..+++++++++++.+++++|.+++++++||||+++ +++|+||++||++.+..
T Consensus       178 vm~~----------~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g-~lvGiIt~~Dll~~~~~  233 (514)
T 1jcn_A          178 VMTP----------RIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCD-ELVAIIARTDLKKNRDY  233 (514)
T ss_dssp             ---C----------CBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSS-CCC----CCCCSSCCCC
T ss_pred             HhCC----------CCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCC-eEEEEEEHHHHHHHhhC
Confidence            9972          01689999999999999999999999999999987 99999999999987753

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.06  E-value=3.8e-11  Score=123.66  Aligned_cols=118  Identities=19%  Similarity=0.346  Sum_probs=6.0

Q ss_pred             HHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCccccc
Q 013373          205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDL  284 (444)
Q Consensus       205 v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l  284 (444)
                      +.++|.    .+++++.+++++.+|+++|.+++++.+||+|++ ++++|+||..|+.+.  ..         ...++.+ 
T Consensus        97 ~~~iM~----~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~-~~lvGivt~~Dl~~~--~~---------~~~~v~~-  159 (494)
T 1vrd_A           97 TENGII----YDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEE-GRLVGLLTNRDVRFE--KN---------LSKKIKD-  159 (494)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             HhhcCc----cCCeEECCCCCHHHHHHHHHHcCceEEEEEcCC-CEEEEEEEHHHHHhh--cC---------CCCcHHH-
Confidence            456676    578999999999999999999999999999976 799999999999752  11         3468888 


Q ss_pred             ccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373          285 GLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (444)
Q Consensus       285 ~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~  343 (444)
                         +|++ ++++++.+++++.+++++|.+++++.+||+|+ +++++|+||.+|+++.+..
T Consensus       160 ---im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIt~~Dll~~~~~  215 (494)
T 1vrd_A          160 ---LMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSK-DNKLVGLITIKDIMSVIEH  215 (494)
T ss_dssp             -----------------------------------------------------CHHHHTC
T ss_pred             ---HhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHhhhcc
Confidence               7873 26899999999999999999999999999998 8999999999999998764

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.03  E-value=6.8e-10  Score=82.38  Aligned_cols=64  Identities=25%  Similarity=0.380  Sum_probs=54.5

Q ss_pred             ceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcc
Q 013373          294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNA  361 (444)
Q Consensus       294 ~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~  361 (444)
                      ++++.+++++.+|+++|.+++++++||+|  +|+++|++|.+|+++.+....  ..+.+.+++++|++
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d--~~~lvGIvT~~Di~~~~~~~~--~~~~~~~V~~iMt~   65 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME--GDEILGVVTERDILDKVVAKG--KNPKEVKVEEIMTK   65 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHHHHTTTTT--CCGGGCBGGGTCEE
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHHhcC--CCcccCCHHHhcCC
Confidence            68999999999999999999999999998  689999999999987654322  12456789999986

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.01  E-value=3.3e-11  Score=123.69  Aligned_cols=110  Identities=27%  Similarity=0.439  Sum_probs=0.5

Q ss_pred             CCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCC
Q 013373          288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP  367 (444)
Q Consensus       288 im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~  367 (444)
                      .|.. +++++.+++++.++++.|.+++++++||+|+  ++++|+|+.+|++.   .       ...++.++|..      
T Consensus        98 ~m~~-~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~--~~lvGivt~~Dl~~---~-------~~~~v~~im~~------  158 (486)
T 2cu0_A           98 LIVE-DVITIAPDETVDFALFLMEKHGIDGLPVVED--EKVVGIITKKDIAA---R-------EGKLVKELMTK------  158 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccc-CceEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHhcc---C-------CCCCHHHHccC------
Confidence            5665 8899999999999999999999999999984  89999999999975   1       24579999984      


Q ss_pred             CCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhH
Q 013373          368 DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI  423 (444)
Q Consensus       368 ~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~  423 (444)
                            +++++++++++.++++.|.+++++.+||||+++ +++|+||.+||++.+.
T Consensus       159 ------~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g-~lvGiiT~~Dil~~~~  207 (486)
T 2cu0_A          159 ------EVITVPESIEVEEALKIMIENRIDRLPVVDERG-KLVGLITMSDLVARKK  207 (486)
T ss_dssp             -------------------------------------------------------C
T ss_pred             ------CCeEECCcCcHHHHHHHHHHcCCCEEEEEecCC-eEEEEEEHHHHHHhhh
Confidence                  789999999999999999999999999999987 9999999999999864

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.01  E-value=3.6e-11  Score=120.88  Aligned_cols=110  Identities=25%  Similarity=0.311  Sum_probs=0.0

Q ss_pred             CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCC--CCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCC
Q 013373          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD  292 (444)
Q Consensus       215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~--~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~  292 (444)
                      .+++++.|+.++.+|+++|.+++++.+||+|+.  .++++||+|.+|+. +-  .         .+.+|++    +|++ 
T Consensus       146 ~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~r-f~--d---------~~~~V~e----vMT~-  208 (556)
T 4af0_A          146 TDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQ-FQ--D---------AETPIKS----VMTT-  208 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccc-cc--c---------cceEhhh----hccc-
Confidence            348899999999999999999999999999863  37999999999973 21  1         3578999    8997 


Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      +++++.++.++.+|.++|.++++..+||||+ +++++|+||.+|+.+.-.
T Consensus       209 ~lvt~~~~~~leeA~~iL~~~kieklpVVd~-~g~LvGlIT~kDi~k~~~  257 (556)
T 4af0_A          209 EVVTGSSPITLEKANSLLRETKKGKLPIVDS-NGHLVSLVARSDLLKNQN  257 (556)
T ss_dssp             --------------------------------------------------
T ss_pred             ceEEecCCCCHHHHHHHHHHccccceeEEcc-CCcEEEEEEechhhhhhh
Confidence            8999999999999999999999999999999 899999999999987643

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.94  E-value=1.3e-10  Score=119.38  Aligned_cols=158  Identities=23%  Similarity=0.312  Sum_probs=22.4

Q ss_pred             CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCc
Q 013373          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  294 (444)
Q Consensus       215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~  294 (444)
                      .+++++.+++++.+++++|.+++++++||+|+  ++++|+||.+|+..    .         ...++.+    +|++ ++
T Consensus       101 ~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~--~~lvGivt~~Dl~~----~---------~~~~v~~----im~~-~~  160 (486)
T 2cu0_A          101 EDVITIAPDETVDFALFLMEKHGIDGLPVVED--EKVVGIITKKDIAA----R---------EGKLVKE----LMTK-EV  160 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCceEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHhcc----C---------CCCCHHH----HccC-CC
Confidence            56889999999999999999999999999987  79999999999874    1         3467888    7886 78


Q ss_pred             eEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCC
Q 013373          295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNP  374 (444)
Q Consensus       295 ~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~  374 (444)
                      +++++++++.++++.|.+++++.+||+|+ +++++|++|.+|+++....+..        ..+....          ..-
T Consensus       161 ~~v~~~~~l~eal~~m~~~~~~~lpVVde-~g~lvGiiT~~Dil~~~~~~~~--------~~~~~g~----------~~v  221 (486)
T 2cu0_A          161 ITVPESIEVEEALKIMIENRIDRLPVVDE-RGKLVGLITMSDLVARKKYKNA--------VRDENGE----------LLV  221 (486)
T ss_dssp             -----------------------------------------------CCTTC--------CBCTTSC----------BCC
T ss_pred             eEECCcCcHHHHHHHHHHcCCCEEEEEec-CCeEEEEEEHHHHHHhhhcccc--------ccccCCc----------eee
Confidence            99999999999999999999999999998 8999999999999988542110        0000000          000


Q ss_pred             CeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEe
Q 013373          375 PITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVIT  414 (444)
Q Consensus       375 ~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT  414 (444)
                      ...+..++  .+.+..|...+++.+ |++..+|+..++++
T Consensus       222 ~~~~~~~~--~~~a~~l~~~gvd~l-vvdta~G~~~~~L~  258 (486)
T 2cu0_A          222 AAAVSPFD--IKRAIELDKAGVDVI-VVDTAHAHNLKAIK  258 (486)
T ss_dssp             EEEECTTC--HHHHHHHHHTTCSEE-EEECSCCCCHHHHH
T ss_pred             cceechhh--HHHHHHHHHhcCCce-EEEecCCcEeehhh
Confidence            11233333  566778888898875 56543335544443

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.90  E-value=7.2e-11  Score=122.15  Aligned_cols=121  Identities=15%  Similarity=0.178  Sum_probs=68.4

Q ss_pred             HHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCC--CCcEEEEEeHHHHHHHhhcCCCCCcccccccCccc
Q 013373          205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (444)
Q Consensus       205 v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~--~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~  282 (444)
                      +.++|.    .+++++.+++++.+|+++|.+++++.+||+|++  .++++|+||..|+.....         .....++.
T Consensus       110 ~~~im~----~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~---------~~~~~~v~  176 (514)
T 1jcn_A          110 FEQGFI----TDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAE---------KDHTTLLS  176 (514)
T ss_dssp             CCTTSC----SSCCCCCC-----------------CEESCC--------CCEECTTTTC---------------------
T ss_pred             hhhccc----cCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhh---------ccCCCCHH
Confidence            456666    568899999999999999999999999999973  279999999999865311         01356788


Q ss_pred             ccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373          283 DLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (444)
Q Consensus       283 ~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~  343 (444)
                      +    +|++ .+++++.+++++.+++++|.+++++.+||+|+ +|+++|+||.+|+++.+..
T Consensus       177 ~----vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIt~~Dll~~~~~  233 (514)
T 1jcn_A          177 E----VMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVND-CDELVAIIARTDLKKNRDY  233 (514)
T ss_dssp             --------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESS-SSCCC----CCCCSSCCCC
T ss_pred             H----HhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECC-CCeEEEEEEHHHHHHHhhC
Confidence            8    7863 16899999999999999999999999999998 8999999999999877653

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.90  E-value=3.5e-09  Score=78.54  Aligned_cols=69  Identities=14%  Similarity=0.239  Sum_probs=56.5

Q ss_pred             ceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCceE
Q 013373          217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT  296 (444)
Q Consensus       217 ~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~~  296 (444)
                      ++++.+++++.+|+++|.+++++++||+|+  ++++||+|..|+++.+.... .    ...+.++++    +|++ ++++
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~--~~lvGIvT~~Di~~~~~~~~-~----~~~~~~V~~----iMt~-~~iT   69 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG--DEILGVVTERDILDKVVAKG-K----NPKEVKVEE----IMTK-NPVK   69 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHHHHTTTTT-C----CGGGCBGGG----TCEE-CTTC
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHhcC-C----CcccCCHHH----hcCC-CCeE
Confidence            689999999999999999999999999985  79999999999987654321 1    124578999    8987 6665


Q ss_pred             e
Q 013373          297 I  297 (444)
Q Consensus       297 v  297 (444)
                      +
T Consensus        70 V   70 (70)
T 3ghd_A           70 I   70 (70)
T ss_dssp             C
T ss_pred             C
Confidence            3

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	444
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	9e-17
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	3e-08
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	3e-15
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	8e-08
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	6e-12
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	2e-11
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	4e-10
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	7e-10
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	3e-06
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	4e-09
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	4e-09
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	4e-09
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	6e-09
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	1e-08
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	4e-08
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	3e-05
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	4e-08
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	5e-08
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	2e-07
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	4e-07
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	1e-06
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	1e-06
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	2e-06
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	3e-06
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	2e-06
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	6e-06
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	6e-06
d1yava3	132	d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bac	2e-05
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	2e-04
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	4e-04

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 75.2 bits (184), Expect = 9e-17
 Identities = 19/129 (14%), Positives = 55/129 (42%)

Query: 291 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNF 350
           S +++   ++  + +AF  +  N +   P+ + +++  VG ++I D  ++L +    +  
Sbjct: 22  SSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALV 81

Query: 351 RQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVV 410
           +   + +                P +     ++L   + SL    +HR+ V+  E    +
Sbjct: 82  QIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTL 141

Query: 411 GVITLRDVI 419
            ++T + ++
Sbjct: 142 YILTHKRIL 150

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.6 bits (120), Expect = 3e-08
 Identities = 18/128 (14%), Positives = 40/128 (31%), Gaps = 5/128 (3%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279
             T   +      L    +R  P+ +         +T +  +  L          I   +
Sbjct: 28  FDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELE 87

Query: 280 PISDLGLPF----MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 335
                         S   ++ I  N  + +A   +  N I  +PV++ +    +  ++ +
Sbjct: 88  EHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHK 147

Query: 336 DI-RHLLL 342
            I + L L
Sbjct: 148 RILKFLKL 155

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.6 bits (172), Expect = 3e-15
 Identities = 23/147 (15%), Positives = 57/147 (38%), Gaps = 12/147 (8%)

Query: 278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
             PI DL +  ++ D + + Q    +++  + +    +  +P+++ +   ++      D+
Sbjct: 5   KIPIGDLNI--ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID-ENGYLINVYEAYDV 61

Query: 338 RHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVH 397
             L+           +       +               TC     L +++ ++    VH
Sbjct: 62  LGLIKGGIYNDLSLSVGEALMRRSDD--------FEGVYTCTKNDKLSTIMDNIRKARVH 113

Query: 398 RIYVVAGEEAEVVGVITLRDVISCFIF 424
           R +VV  +   +VGV+TL D++   + 
Sbjct: 114 RFFVV-DDVGRLVGVLTLSDILKYILL 139

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.0 bits (116), Expect = 8e-08
 Identities = 22/124 (17%), Positives = 51/124 (41%), Gaps = 7/124 (5%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279
                 ++ V+ +L++ R+ +VPII     D   Y+        + G      ++ ++  
Sbjct: 22  CQMTTPVIDVIQMLTQGRVSSVPII-----DENGYLINVYEAYDVLGLIKGGIYNDLSLS 76

Query: 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI-R 338
               L       + V T   N+ +      ++   +    VV+    ++VG +++ DI +
Sbjct: 77  VGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILK 135

Query: 339 HLLL 342
           ++LL
Sbjct: 136 YILL 139

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.0 bits (147), Expect = 6e-12
 Identities = 29/149 (19%), Positives = 62/149 (41%), Gaps = 12/149 (8%)

Query: 278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
           S+ + +L +   +   +  +++   +  A      + +  +PVV+ ++ ++V   S  D 
Sbjct: 8   SKSLEELQIG--TYANIAMVRTTTPVYVALGIFVQHRVSALPVVD-EKGRVVDIYSKFD- 63

Query: 338 RHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVH 397
             + L  E   N   ++V   +                + C L  TL ++I+ L    VH
Sbjct: 64  -VINLAAEKTYNNLDVSVTKALQHRSHYFE------GVLKCYLHETLEAIINRLVEAEVH 116

Query: 398 RIYVVAGEEAEVVGVITLRDVISCFIFEP 426
           R+ VV  E   V G+++L D++   +   
Sbjct: 117 RLVVV-DEHDVVKGIVSLSDILQALVLTG 144

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 59.6 bits (143), Expect = 2e-11
 Identities = 24/148 (16%), Positives = 57/148 (38%), Gaps = 12/148 (8%)

Query: 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339
           P++ + +   S   + T      + +  K + + NI  +P+V  +   +       D+ H
Sbjct: 2   PLNQMTIGTWS--NLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNV-YESVDVMH 58

Query: 340 LLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRI 399
           L                  ++            +   TC+    L  +  ++    VHR+
Sbjct: 59  L--------IQDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRL 110

Query: 400 YVVAGEEAEVVGVITLRDVISCFIFEPP 427
           +VV  E  ++ G+++L D+++  I++  
Sbjct: 111 FVV-DENLKLEGILSLADILNYIIYDKT 137

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 55.2 bits (132), Expect = 4e-10
 Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 18/128 (14%)

Query: 292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 351
             V+ I  ++ +  A ++M  +NIG + V++ +  K+VG ++ RD               
Sbjct: 13  HTVVAIGPDDSVFNAMQKMAADNIGALLVMKDE--KLVGILTERDFSR------------ 58

Query: 352 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVG 411
                     V  T              L +T    +  +    V  + V+  ++ +V+G
Sbjct: 59  --KSYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVL--DDGKVIG 114

Query: 412 VITLRDVI 419
           ++++ D++
Sbjct: 115 LLSIGDLV 122

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 54.9 bits (131), Expect = 7e-10
 Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 11/136 (8%)

Query: 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF 347
            M+     T+     + +A   M+  +I  +P+V+   KK++G VS RD+          
Sbjct: 7   MMTRH-PHTLLRTHTLNDAKHLMEALDIRHVPIVD-ANKKLLGIVSQRDLLAAQESSLQR 64

Query: 348 SNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEA 407
           S        +     V             +   ++ L      +    +  + VV   + 
Sbjct: 65  SAQGDSLAFETPLFEVMH-------TDVTSVAPQAGLKESAIYMQKHKIGCLPVV--AKD 115

Query: 408 EVVGVITLRDVISCFI 423
            +VG+IT  D ++  I
Sbjct: 116 VLVGIITDSDFVTIAI 131

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 44.5 bits (104), Expect = 3e-06
 Identities = 20/140 (14%), Positives = 50/140 (35%), Gaps = 10/140 (7%)

Query: 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263
            V  ++          +    ++     L+    +R+VPI++     +   ++Q  ++  
Sbjct: 3   KVEDMMTR----HPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAA 57

Query: 264 LEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEG 323
            E                 +  L  +   +V ++     + E+   M+ + IG +PVV  
Sbjct: 58  QESSL---QRSAQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK 114

Query: 324 QQKKIVGNVSIRDIRHLLLK 343
               +VG ++  D   + + 
Sbjct: 115 --DVLVGIITDSDFVTIAIN 132

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 53.8 bits (128), Expect = 4e-09
 Identities = 19/158 (12%), Positives = 49/158 (31%), Gaps = 11/158 (6%)

Query: 270 RDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIV 329
           ++    I S+   D+      S  +I       +  +   +  NNI   P+ + +  K  
Sbjct: 11  KEIQAFIRSRTSYDVLPT---SFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFA 67

Query: 330 GNVSIRDIRHLLLK----PELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLG 385
           G +++ D  +++              ++     +                I      +L 
Sbjct: 68  GLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLM 127

Query: 386 SVIHSLASKSVHRIYVV----AGEEAEVVGVITLRDVI 419
               +++     RI ++          +V V+T   ++
Sbjct: 128 DACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRIL 165

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 53.1 bits (126), Expect = 4e-09
 Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 18/152 (11%)

Query: 287 PFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL 346
           P+     V  +     +  A K +  +N   +PVV+ +   +   V   D+        +
Sbjct: 8   PYYQRY-VSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVG-IVDETDLLRDSEIVRI 65

Query: 347 FSNFRQLTVRDFM--------------NAVVPTTPDSGKVNP-PITCKLESTLGSVIHSL 391
             +       +                   +P  P +  +    I      T+  V   +
Sbjct: 66  MKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKM 125

Query: 392 ASKSVHRIYVVAGEEAEVVGVITLRDVISCFI 423
           A  S+ ++ V+   E +++G+I   D++   +
Sbjct: 126 AKYSIEQLPVI-RGEGDLIGLIRDFDLLKVLV 156

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 52.7 bits (125), Expect = 4e-09
 Identities = 19/131 (14%), Positives = 53/131 (40%), Gaps = 4/131 (3%)

Query: 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS 348
           +S      ++ +  I E   R+ ++ +     V  +  K+VG + +  +  +        
Sbjct: 10  ISLK-PTVVEEDTPIEEIVDRILEDPVTRTVYVA-RDNKLVGMIPVMHLLKVSGFHFFGF 67

Query: 349 NFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAE 408
             ++  +R  M   +     S  +  P+   +++ L   +  +   ++  + VV  E+ E
Sbjct: 68  IPKEELIRSSMKR-LIAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPVV-DEKGE 125

Query: 409 VVGVITLRDVI 419
           +VG +   +++
Sbjct: 126 IVGDLNSLEIL 136

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 51.7 bits (123), Expect = 6e-09
 Identities = 22/133 (16%), Positives = 43/133 (32%), Gaps = 20/133 (15%)

Query: 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVE--GQQKKIVGNVSIRDIRHLLLKPEL 346
             +D  + +   + + + F+    +   GIP+ +      ++VG +S RDI  L  +   
Sbjct: 2   FITD-PVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEE--- 57

Query: 347 FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE 406
                                   K    +      TL      L      ++ +V  E 
Sbjct: 58  -------------EHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIV-NEN 103

Query: 407 AEVVGVITLRDVI 419
            E+V +I   D+ 
Sbjct: 104 DELVAIIARTDLK 116

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 51.6 bits (122), Expect = 1e-08
 Identities = 22/142 (15%), Positives = 42/142 (29%), Gaps = 14/142 (9%)

Query: 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS 348
           M  D V +I S     +    ++   +   P V+      +     R     LL+  + +
Sbjct: 17  MVRD-VTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISA 75

Query: 349 NFRQLTVRDFMNAVVPTTPDSGKVN-----------PPITCKLESTLGSVIHSLASKSVH 397
             RQ          +       K              P      ++L       +   + 
Sbjct: 76  YRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLD 135

Query: 398 RIYVVAGEEAEVVGVITLRDVI 419
           R YV      ++VGV+ L ++ 
Sbjct: 136 RAYVT--SMGKLVGVVALAEIQ 155

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 4e-08
 Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 12/136 (8%)

Query: 294 VITIQSNELILEAFKRMKDNNIGGIPVV-EGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ 352
            +  Q +  + +    + +    G PVV   + +++VG V  RD+   +       +   
Sbjct: 19  TVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVV 78

Query: 353 LTVRDFMNAVVPTTPDSGKVN---------PPITCKLESTLGSVIHSLASKSVHRIYVVA 403
            T   +     P  P                P T    + +  V+       + +  V  
Sbjct: 79  STSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVT- 137

Query: 404 GEEAEVVGVITLRDVI 419
                ++G+IT +DV+
Sbjct: 138 -HNGRLLGIITKKDVL 152

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 3e-05
 Identities = 20/152 (13%), Positives = 49/152 (32%), Gaps = 18/152 (11%)

Query: 202 STTVRSIIKSYRWAPFLPVATDDSML--SVLLLLSKYRLRNVPII-EPGTPDIKNYITQS 258
            T    ++K  R  P L V T DSM    V  ++S+      P++    +  +  ++ + 
Sbjct: 2   KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRR 61

Query: 259 AVVQ-GLEGCKGRDWFDIIASQPISDLGLPFMSSD------------EVITIQSNELILE 305
            ++       K +D     +    ++   P                    T+     +  
Sbjct: 62  DLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEI 121

Query: 306 AFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
                +   +    V      +++G ++ +D+
Sbjct: 122 VVDIFRKLGLRQCLVTHN--GRLLGIITKKDV 151

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 49.6 bits (117), Expect = 4e-08
 Identities = 22/138 (15%), Positives = 49/138 (35%), Gaps = 18/138 (13%)

Query: 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPV----VEGQQKKIVGNVSIRDIRHLLLKP 344
           M  +    +   + +  AFK++ +  IG I V    +EG         ++          
Sbjct: 7   MIKN-PPILSKEDRLGSAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYCKDSCSQ 65

Query: 345 ELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAG 404
               +     + D+M      TP+   V             + I+ + +++   + VV  
Sbjct: 66  GDLYHISTTPIIDYM------TPNPVTVYNTSDEF------TAINIMVTRNFGSLPVV-D 112

Query: 405 EEAEVVGVITLRDVISCF 422
              + VG++T R+ +  +
Sbjct: 113 INDKPVGIVTEREFLLLY 130

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 49.4 bits (117), Expect = 5e-08
 Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 23/142 (16%)

Query: 278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
             PI       M+   ++ ++ +  + EA + M + ++G + V           V     
Sbjct: 4   KAPIKVY----MTKK-LLGVKPSTSVQEASRLMMEFDVGSLVV----INDDGNVVGFFTK 54

Query: 338 RHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVH 397
             ++ +  +      + V   M                IT  + + LG V+  +A   + 
Sbjct: 55  SDIIRRVIVPGLPYDIPVERIMT------------RNLITANVNTPLGEVLRKMAEHRIK 102

Query: 398 RIYVVAGEEAEVVGVITLRDVI 419
            I +   EE ++VG+ TL D++
Sbjct: 103 HILIE--EEGKIVGIFTLSDLL 122

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 47.2 bits (111), Expect = 2e-07
 Identities = 18/131 (13%), Positives = 45/131 (34%), Gaps = 18/131 (13%)

Query: 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS 348
           M++  V  +  +E +  A + M++++IG +P+     +          +   L      +
Sbjct: 7   MNAG-VTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPN 65

Query: 349 NFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAE 408
                 +       V       +               +++ +    V R+ V+   E  
Sbjct: 66  TATAGELARDSIYYVDANASIQE---------------MLNVMEEHQVRRVPVI--SEHR 108

Query: 409 VVGVITLRDVI 419
           +VG++T  D+ 
Sbjct: 109 LVGIVTEADIA 119

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 47.3 bits (111), Expect = 4e-07
 Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 20/142 (14%)

Query: 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339
           P+       MS+  V TI     + +A K M       +PV++   K +     +  I+ 
Sbjct: 3   PVKVF----MSTK-VQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQ 57

Query: 340 LLLKPELFSNFRQ--LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVH 397
           L    +           V+D M                +T    +++      +  K + 
Sbjct: 58  LAKAVDKLDPDYFYGKVVKDVMV------------TNLVTIDELASVNRAAAEMIVKRIG 105

Query: 398 RIYVVAGEEAEVVGVITLRDVI 419
            + ++  +   + G+IT RD++
Sbjct: 106 SLLILNKDN-TIRGIITERDLL 126

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 45.3 bits (106), Expect = 1e-06
 Identities = 16/138 (11%), Positives = 40/138 (28%), Gaps = 24/138 (17%)

Query: 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF 347
           +++ D    ++ +  + E   RM+        V + +                       
Sbjct: 6   WVTQD-FPMVEESATVRECLHRMRQYQTNECIVKDREGHFR------------------- 45

Query: 348 SNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEA 407
                +   D ++  + ++  +    P      E  +   +          + VV  EE 
Sbjct: 46  ---GVVNKEDLLDLDLDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVV-DEEM 101

Query: 408 EVVGVITLRDVISCFIFE 425
            + G ++L D +   I  
Sbjct: 102 RLKGAVSLHDFLEALIEA 119

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 45.2 bits (106), Expect = 1e-06
 Identities = 21/131 (16%), Positives = 40/131 (30%), Gaps = 20/131 (15%)

Query: 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS 348
           M +D V TI     + +  +   +N  G   VV+   +  +                   
Sbjct: 6   MVTD-VDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEGDDLAEV 64

Query: 349 NFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAE 408
              ++  RD +      T                        +    V R+ V   E+ E
Sbjct: 65  KVWEVMERDLVTISPRATIK-----------------EAAEKMVKNVVWRLLVE--EDDE 105

Query: 409 VVGVITLRDVI 419
           ++GVI+  D++
Sbjct: 106 IIGVISATDIL 116

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.9 bits (105), Expect = 2e-06
 Identities = 21/155 (13%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263
            V  I+ S     F  V  + ++   + ++++  L  + + +    D+     +S + + 
Sbjct: 4   RVEKIMNS----NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRF 59

Query: 264 LEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEG 323
           +   K  D   I             +    +  ++S+  + +    + +N +    VV+ 
Sbjct: 60  IPRNKKPDEVPI-----------RLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDD 108

Query: 324 QQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDF 358
              ++VG V++ D+   L +  +         +D+
Sbjct: 109 P-GRVVGIVTLTDLSRYLSRASITDILLSHRTKDY 142

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.5 bits (104), Expect = 3e-06
 Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 17/131 (12%)

Query: 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS 348
           M+S+   T+  N  + +A K M +N++ G+ V +      VG +S R I    +      
Sbjct: 9   MNSN-FKTVNWNTTVFDAVKIMNENHLYGLVVKD-DNGNDVGLLSERSIIKRFIPRNKKP 66

Query: 349 NFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAE 408
           +   + +          +    K               V   L+   + R  VV  +   
Sbjct: 67  DEVPIRLVMRKPIPKVKSDYDVK--------------DVAAYLSENGLERCAVV-DDPGR 111

Query: 409 VVGVITLRDVI 419
           VVG++TL D+ 
Sbjct: 112 VVGIVTLTDLS 122

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 44.5 bits (104), Expect = 2e-06
 Identities = 21/135 (15%), Positives = 40/135 (29%), Gaps = 24/135 (17%)

Query: 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS 348
           M+ +  +TI        A +  K   +   PVV  + K                      
Sbjct: 7   MTQN-PVTITLPATRNYALELFKKYKVRSFPVVNKEGK---------------------- 43

Query: 349 NFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAE 408
               ++V+  +                   K   TL      +      R+ VV   + +
Sbjct: 44  LVGIISVKRILVNPDEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVV-DSKGK 102

Query: 409 VVGVITLRDVISCFI 423
            VG++T+ D+I  + 
Sbjct: 103 PVGILTVGDIIRRYF 117

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 43.3 bits (101), Expect = 6e-06
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 20/132 (15%)

Query: 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF 347
           +M +  VI++  +  + +  K M + NIG + VV+G +   VG ++ RDI   +      
Sbjct: 9   YMKTQ-VISVTKDAKLNDIAKVMTEKNIGSVIVVDGNK--PVGIITERDIVKAI------ 59

Query: 348 SNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEA 407
                          + T  +       IT + +S +   +  +   ++  + VV  ++ 
Sbjct: 60  ----------GKGKSLETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVV-DDKG 108

Query: 408 EVVGVITLRDVI 419
            + G+I++RD+ 
Sbjct: 109 NLKGIISIRDIT 120

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 43.3 bits (101), Expect = 6e-06
 Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 22/132 (16%)

Query: 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPV-VEGQQKKIVGNVSIRDIRHLLLKPELF 347
           +  D    +     + EA + M+   I G+P+      +K+VG ++ RD+R +       
Sbjct: 3   VIID-PFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNAPI 61

Query: 348 SNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEA 407
           S                        +  +      T       +  +       +     
Sbjct: 62  SEHMT--------------------SEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSG 101

Query: 408 EVVGVITLRDVI 419
            + G+IT++D+ 
Sbjct: 102 RLSGLITIKDIE 113

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 18/133 (13%), Positives = 38/133 (28%), Gaps = 15/133 (11%)

Query: 288 FM-SSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL 346
           FM  +D+V  +Q    +  A   +       IPV++    ++ G +    I + +   E 
Sbjct: 7   FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLD-PSYRLHGLIGTNMIMNSIFGLER 65

Query: 347 FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE 406
               +   +      +                 +                +    V  +E
Sbjct: 66  IEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVIN-------------NGFVCVENDE 112

Query: 407 AEVVGVITLRDVI 419
               G+ T R V+
Sbjct: 113 QVFEGIFTRRVVL 125

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 20/139 (14%), Positives = 42/139 (30%), Gaps = 22/139 (15%)

Query: 281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL 340
            S+L    +     +++     I E    +  N +G   +      K    V        
Sbjct: 3   TSEL----LKRP-PVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILR 57

Query: 341 LLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIY 400
            +   L  +   + + +    V+ T P                            +  + 
Sbjct: 58  AVAQRLDLDGPAMPIANSPITVLDTDPVHVAAEKMRRHN----------------IRHVV 101

Query: 401 VVAGEEAEVVGVITLRDVI 419
           VV  +  E+VGV+++RD+ 
Sbjct: 102 VV-NKNGELVGVLSIRDLC 119

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 37.8 bits (87), Expect = 4e-04
 Identities = 24/136 (17%), Positives = 55/136 (40%), Gaps = 29/136 (21%)

Query: 289 MSSDEVITIQSNELILEAFKRMKDN-----NIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343
           M+++  ++I +N+ +  A   +K+       I  + VV+ Q+  +VG +S+RD+      
Sbjct: 7   MTTE-FVSIVANQTVRSAMYVLKNQADMAETIYYVYVVD-QENHLVGVISLRDLIV---- 60

Query: 344 PELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVA 403
                N     + D +N               I+  +      V  ++       + V  
Sbjct: 61  -----NDDDTLIADILN------------ERVISVHVGDDQEDVAQTIRDYDFLAVPVT- 102

Query: 404 GEEAEVVGVITLRDVI 419
             +  ++G++T+ D+I
Sbjct: 103 DYDDHLLGIVTVDDII 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	444
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.8
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.8
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.8
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.79
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.79
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.79
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.79
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.78
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.78
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.78
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.77
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.77
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.76
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.76
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.76
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.76
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.76
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.75
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.75
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.75
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.74
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.74
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.74
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.74
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.74
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.74
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.74
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.73
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.73
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.73
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.72
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.72
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.7
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.69
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.68
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.68
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.68
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.68
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.68
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.67
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.67
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.67
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.66
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.66
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.66
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.65
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.64
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.64
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.62
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.59
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.59
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.57

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.80  E-value=9.3e-20  Score=150.50  Aligned_cols=121  Identities=18%  Similarity=0.336  Sum_probs=105.8

Q ss_pred             cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHh
Q 013373          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFM  359 (444)
Q Consensus       280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m  359 (444)
                      ++++    +|++ +++++.+++++.+|++.|.+++++++||+|+ +|+++|++|.+|+++.+....  ......++.++|
T Consensus         2 t~~d----iM~~-~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-~~~~~Giit~~Di~~~~~~~~--~~~~~~~v~~im   73 (123)
T d1y5ha3           2 TARD----IMNA-GVTCVGEHETLTAAAQYMREHDIGALPICGD-DDRLHGMLTDRDIVIKGLAAG--LDPNTATAGELA   73 (123)
T ss_dssp             CHHH----HSEE-TCCCEETTSBHHHHHHHHHHHTCSEEEEECG-GGBEEEEEEHHHHHHTTGGGT--CCTTTSBHHHHH
T ss_pred             CHHH----hcCC-CCcEECCcCcHHHHHHHHHHcCCCceEEEec-cchhhhhhhhhhHhhhhhhcC--CCcccceEEEEe
Confidence            4667    7886 8999999999999999999999999999998 799999999999987544221  123456789999


Q ss_pred             cccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013373          360 NAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF  422 (444)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l  422 (444)
                      .+            +++++++++++.++++.|.+++++++||+|+ + +++|+||++||++++
T Consensus        74 ~~------------~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~-~-~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          74 RD------------SIYYVDANASIQEMLNVMEEHQVRRVPVISE-H-RLVGIVTEADIARHL  122 (123)
T ss_dssp             TT------------CCCCEETTCCHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHHHTC
T ss_pred             ec------------cceeeeecchHHHHHHHHHHcCceEEEEEEC-C-EEEEEEEHHHHHhhC
Confidence            85            8899999999999999999999999999995 5 999999999999864

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.80  E-value=3.1e-19  Score=148.12  Aligned_cols=124  Identities=23%  Similarity=0.388  Sum_probs=111.4

Q ss_pred             ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013373          277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVR  356 (444)
Q Consensus       277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~  356 (444)
                      ....|++    +|++ +++++.+++++.+|+++|.+++++++||+|  +++++|++|.+|+++.+.....    ...++.
T Consensus         2 ~~~~V~d----~m~~-~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d--~~~~~Givt~~dl~~~~~~~~~----~~~~v~   70 (127)
T d2ef7a1           2 EEEIVKE----YMKT-QVISVTKDAKLNDIAKVMTEKNIGSVIVVD--GNKPVGIITERDIVKAIGKGKS----LETKAE   70 (127)
T ss_dssp             CCCBGGG----TSBC-SCCEEETTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHTTCC----TTCBGG
T ss_pred             CccCHHH----hCCC-CCeEECCcCcHHHHHHHHHHcCCceEEeec--ccchhhhcchhHHHHHHHhhcc----ccchhh
Confidence            3467888    8987 899999999999999999999999999998  5799999999999998764322    356899


Q ss_pred             HHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          357 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       357 ~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      ++|..            ++.++++++++.++++.|.+++++++||+|++| +++|+||+.||++++..
T Consensus        71 ~~~~~------------~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~-~lvGiit~~Dll~~i~~  125 (127)
T d2ef7a1          71 EFMTA------------SLITIREDSPITGALALMRQFNIRHLPVVDDKG-NLKGIISIRDITRAIDD  125 (127)
T ss_dssp             GTSEE------------CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHHH
T ss_pred             hhhhh------------hccccccccchhHHHHHHHHcCceEEEEEeCCC-eEEEEEEHHHHHHHHHh
Confidence            99985            889999999999999999999999999999988 99999999999998864

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=5.2e-19  Score=149.30  Aligned_cols=137  Identities=19%  Similarity=0.385  Sum_probs=109.5

Q ss_pred             cccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013373          276 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV  355 (444)
Q Consensus       276 ~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v  355 (444)
                      +...|+.++++ ++. ++++++.+++++.+|++.|.+++++++||+|+ +++++|+||.+|+++++.....  ......+
T Consensus         3 ~~~~~i~~l~~-~~~-~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~-~~~~vG~it~~Di~~~~~~~~~--~~~~~~~   77 (140)
T d2nyca1           3 FLKIPIGDLNI-ITQ-DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE-NGYLINVYEAYDVLGLIKGGIY--NDLSLSV   77 (140)
T ss_dssp             GGGSBGGGSSC-CBC-SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHTC------CCSBH
T ss_pred             cccCcHHHhCC-ccC-CCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec-CCeEcceehhhHHHHHHhhccc--cccccch
Confidence            35678998865 455 48999999999999999999999999999998 8899999999999998865322  1223445


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      .+.+.....      ...++++|++++++.++++.|.+++++++||||++| +++|+||.+||+++++.
T Consensus        78 ~~~~~~~~~------~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~-~l~GiIt~~Dii~~l~~  139 (140)
T d2nyca1          78 GEALMRRSD------DFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVG-RLVGVLTLSDILKYILL  139 (140)
T ss_dssp             HHHHHHCC------------CEECTTSBHHHHHHHHHHHTCSEEEEECTTS-BEEEEEEHHHHHHHHHH
T ss_pred             hhhhhhhhh------cccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCC-eEEEEEEHHHHHHHHhc
Confidence            555542111      123778999999999999999999999999999998 99999999999999863

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.79  E-value=1.2e-18  Score=149.46  Aligned_cols=137  Identities=18%  Similarity=0.411  Sum_probs=113.6

Q ss_pred             cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHh
Q 013373          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFM  359 (444)
Q Consensus       280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m  359 (444)
                      |++++.++  +.++++++.+++++.+|++.|.+++++++||+|+ +++++|++|.+|+++.+.....  .....++.++|
T Consensus         2 pl~~~~ig--~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~-~~~~vG~it~~Dl~~~~~~~~~--~~~~~~v~~~~   76 (153)
T d2ooxe2           2 PLNQMTIG--TWSNLATASMETKVYDVIKMLAEKNISAVPIVNS-EGTLLNVYESVDVMHLIQDGDY--SNLDLSVGEAL   76 (153)
T ss_dssp             BGGGTCCS--BCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECG-GGBEEEEEEHHHHHHHHGGGCG--GGGGSBHHHHH
T ss_pred             CHHHcCCC--CCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecc-cceEEEEEEeeeeeehhccccc--cccccchhhhe
Confidence            56665443  2347999999999999999999999999999998 8999999999999988764221  22466899998


Q ss_pred             cccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCc
Q 013373          360 NAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPN  428 (444)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~  428 (444)
                      .....      ...+++++.+++++.++++.|.+++++++||||++| +++|+||++||++++..++..
T Consensus        77 ~~~~~------~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~-~lvGivT~~Dil~~~~~~~~~  138 (153)
T d2ooxe2          77 LKRPA------NFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENL-KLEGILSLADILNYIIYDKTT  138 (153)
T ss_dssp             HTSCC------CSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTC-BEEEEEEHHHHHHHHHSCTTC
T ss_pred             eeeec------ccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCC-EEEEEEEHHHHHHHHHcCccc
Confidence            74211      224778999999999999999999999999999987 999999999999999865443

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.79  E-value=1.3e-19  Score=155.90  Aligned_cols=128  Identities=20%  Similarity=0.252  Sum_probs=107.6

Q ss_pred             ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCc-----------
Q 013373          277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE-----------  345 (444)
Q Consensus       277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~-----------  345 (444)
                      .+.+|.+    +|++ +++++.+++++.+|++.|.+++++++||+|+ +|+++|++|..|+++.+....           
T Consensus         2 ~~~~v~~----~m~r-~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~-~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~   75 (156)
T d2yzqa1           2 KGVEIEP----YYQR-YVSIVWEGTPLKAALKALLLSNSMALPVVDS-EGNLVGIVDETDLLRDSEIVRIMKSTELAASS   75 (156)
T ss_dssp             GGCBSTT----TSBS-CCCCEETTSBHHHHHHHHHTCSSSEEEEECT-TSCEEEEEEGGGGGGCGGGCC-----------
T ss_pred             CCCCHHH----HhcC-CCeEECCcCcHHHHHHHHHHcCCCEEEEEeC-CCCceeEEeeeechhhhcccccccccccccch
Confidence            3567888    7886 8999999999999999999999999999998 899999999999976543210           


Q ss_pred             ----------------cccccccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeE
Q 013373          346 ----------------LFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEV  409 (444)
Q Consensus       346 ----------------~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~l  409 (444)
                                      ........++.++|+.            ++.+|.+++++.++++.|.+++++++||+|++| ++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~------------~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g-~l  142 (156)
T d2yzqa1          76 EEEWILESHPTLLFEKFELQLPNKPVAEIMTR------------DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEG-DL  142 (156)
T ss_dssp             ---------------------CCCBGGGTCBS------------SCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTT-EE
T ss_pred             hhhhhhhhhhhhhHHHhhhcccCCEeehhccc------------CceEECcccccHHHHHHHHHcCeeEEEEEeCCC-EE
Confidence                            0012234466777763            789999999999999999999999999999998 99


Q ss_pred             EEEEeHHHHHHHhH
Q 013373          410 VGVITLRDVISCFI  423 (444)
Q Consensus       410 vGvIT~~DIl~~l~  423 (444)
                      +||||++||+++|+
T Consensus       143 vGivt~~Dil~~l~  156 (156)
T d2yzqa1         143 IGLIRDFDLLKVLV  156 (156)
T ss_dssp             EEEEEHHHHGGGGC
T ss_pred             EEEEEHHHHHHHhC
Confidence            99999999999873

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.79  E-value=3.9e-19  Score=150.51  Aligned_cols=125  Identities=24%  Similarity=0.312  Sum_probs=111.0

Q ss_pred             CcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHH
Q 013373          279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDF  358 (444)
Q Consensus       279 ~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~  358 (444)
                      .+|++    +|++ ++.++++++++.+|++.|.+++++++||+|+ +|+++|++|.+|+++.+...  .......++.++
T Consensus         3 m~v~d----im~~-~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~-~~~~~Giit~~di~~~~~~~--~~~~~~~~v~~i   74 (142)
T d1pvma4           3 MRVEK----IMNS-NFKTVNWNTTVFDAVKIMNENHLYGLVVKDD-NGNDVGLLSERSIIKRFIPR--NKKPDEVPIRLV   74 (142)
T ss_dssp             CBGGG----TSBT-TCCEEETTCBHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHHHTGGG--CCCGGGSBGGGT
T ss_pred             EEHHH----hCCC-CCcEECCcCcHHHHHHHHHHCCCceEeeecc-CCcccceEEeechhhhhhhh--cccccccccccc
Confidence            46788    7987 8999999999999999999999999999998 89999999999998775421  123446689999


Q ss_pred             hcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          359 MNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       359 m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      |..            +++++++++++.+++++|.+++++++||||++| +++|+||..||++++..
T Consensus        75 m~~------------~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g-~l~Giit~~Dil~~l~~  127 (142)
T d1pvma4          75 MRK------------PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPG-RVVGIVTLTDLSRYLSR  127 (142)
T ss_dssp             SBS------------SCCEEETTCBHHHHHHHHHHHTCSEEEEECTTC-CEEEEEEHHHHTTTSCH
T ss_pred             ccc------------ccccccchhhHHHHHHHHHHcCCcEEEEEecCC-EEEEEEEHHHHHHHHhh
Confidence            984            899999999999999999999999999999987 99999999999997754

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.79  E-value=1.1e-18  Score=145.82  Aligned_cols=125  Identities=22%  Similarity=0.425  Sum_probs=111.5

Q ss_pred             cCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHH
Q 013373          278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRD  357 (444)
Q Consensus       278 ~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~  357 (444)
                      ..||++    +|+. +++++.+++++.+|++.|.+++++++||+|+ +|+++|++|.+|+++.+.....   ....++.+
T Consensus         4 ~~pV~~----im~~-~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~-~~~~~Giit~~di~~~~~~~~~---~~~~~v~~   74 (132)
T d2yzia1           4 KAPIKV----YMTK-KLLGVKPSTSVQEASRLMMEFDVGSLVVIND-DGNVVGFFTKSDIIRRVIVPGL---PYDIPVER   74 (132)
T ss_dssp             TSBGGG----TCBC-CCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHTTTTCC---CTTSBGGG
T ss_pred             CCcHHH----HcCC-CCeEECCcCcHHHHHHHHHHcCCcEEEEecc-cceeeeeeeHHHHHHHHhhccC---ccceeEee
Confidence            468999    7986 8999999999999999999999999999998 8999999999999987664332   24568999


Q ss_pred             HhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013373          358 FMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  425 (444)
Q Consensus       358 ~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e  425 (444)
                      +|.+            ++.++++++++.++++.|.+++++++||+++ | +++|+||.+||++.+..+
T Consensus        75 im~~------------~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~~-~-~~vGivt~~Dil~a~~~~  128 (132)
T d2yzia1          75 IMTR------------NLITANVNTPLGEVLRKMAEHRIKHILIEEE-G-KIVGIFTLSDLLEASRRR  128 (132)
T ss_dssp             TCBC------------SCCEEETTSBHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHHHHHHCC
T ss_pred             cccc------------cccccCcchHHHHHHHHHHHcCCCEEEEEEC-C-EEEEEEEHHHHHHHHHHH
Confidence            9985            8999999999999999999999999998764 5 999999999999998764

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.78  E-value=8.4e-19  Score=147.84  Aligned_cols=125  Identities=22%  Similarity=0.226  Sum_probs=108.6

Q ss_pred             cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCc-----cccccccCc
Q 013373          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE-----LFSNFRQLT  354 (444)
Q Consensus       280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~-----~~~~~~~~~  354 (444)
                      ++++    +|++ ++.++++++++.+|++.|.+++++++||+|+ +++++|+||.+|+++++....     ........+
T Consensus         3 ~v~d----iM~~-~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~-~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~   76 (139)
T d2o16a3           3 KVED----MMTR-HPHTLLRTHTLNDAKHLMEALDIRHVPIVDA-NKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETP   76 (139)
T ss_dssp             BGGG----TSEE-SCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHHHCC---------CCCB
T ss_pred             EHHH----hCcC-CCeEECCcCCHHHHHHHHHHcCCCeeeeecc-cccccccccHHHHHHHHHhhhhhhhcccccccccc
Confidence            5778    7987 8999999999999999999999999999998 899999999999988774310     001233568


Q ss_pred             HHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          355 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       355 v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      +.++|.+            ++.+|++++++.+|+++|.+++++++||+|+ | +++|+||++||++++..
T Consensus        77 v~~im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~-~lvGiit~~Dil~~~~~  132 (139)
T d2o16a3          77 LFEVMHT------------DVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-D-VLVGIITDSDFVTIAIN  132 (139)
T ss_dssp             HHHHSCS------------CEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-T-EEEEEECHHHHHHHHHH
T ss_pred             hhHhhcc------------ccccccccchHHHHHHHHHHcCceEEEEEEC-C-EEEEEEEHHHHHHHHHH
Confidence            9999985            8899999999999999999999999999996 5 99999999999999874

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=1.3e-18  Score=147.70  Aligned_cols=140  Identities=19%  Similarity=0.356  Sum_probs=115.0

Q ss_pred             cccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013373          276 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV  355 (444)
Q Consensus       276 ~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v  355 (444)
                      +...+++++.++ +. ++++++.+++++.+|++.|.+++++++||+|+ +|+++|++|.+|+++.+.....  .....++
T Consensus         6 f~~~~l~~l~i~-~~-~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~-~~~~~Gvit~~di~~~l~~~~~--~~~~~~v   80 (145)
T d2v8qe1           6 FMSKSLEELQIG-TY-ANIAMVRTTTPVYVALGIFVQHRVSALPVVDE-KGRVVDIYSKFDVINLAAEKTY--NNLDVSV   80 (145)
T ss_dssp             GGGSBHHHHTCS-BC-SSCCCEETTCBHHHHHHHHHHHCCSEEEEECT-TSBEEEEEEGGGTGGGGGSSCC--CCCSSBH
T ss_pred             HhhCCHHHHcCC-CC-CCceEEcCcCcHHHHHHHHHHcCCCccccccc-CCceEEEEEcchhhhhhhcccc--cchhhhh
Confidence            345678887653 22 37999999999999999999999999999998 8999999999999888764322  1234567


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCC
Q 013373          356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPP  427 (444)
Q Consensus       356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~  427 (444)
                      .+.+.....      ...+++++.+++++.+++++|.+++++++||+|++| +++|+||.+||+++++.+++
T Consensus        81 ~~~~~~~~~------~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g-~l~GiVt~~dii~~lv~~~~  145 (145)
T d2v8qe1          81 TKALQHRSH------YFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHD-VVKGIVSLSDILQALVLTGG  145 (145)
T ss_dssp             HHHGGGCCS------CCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTS-BEEEEEEHHHHHHHHHSSCC
T ss_pred             hhccchhhh------ccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCC-EEEEEEEHHHHHHHHHhcCC
Confidence            776653211      224788999999999999999999999999999988 99999999999999998653

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=3.6e-19  Score=153.59  Aligned_cols=153  Identities=10%  Similarity=0.175  Sum_probs=117.7

Q ss_pred             HHHHHHhhcCCccCCCCCCCCCeEEEeCCCCHHHHHHHHHHCCCccCceecCCCCCCCCcccceeEEEehhHHHHHHHhh
Q 013373           35 ETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLET  114 (444)
Q Consensus        35 ~~~~~~~~~~~v~~~~~~~~~~~i~v~~~~si~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~~Giv~~~di~~~~l~~  114 (444)
                      ..++.||++..+++++. ++.++++++.++|+.+|+++|.++++.++||+|++.       ++++|+|+..|++.++...
T Consensus         4 ~~~~~~l~~~t~~Dlm~-~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~-------~~~vG~is~~Dl~~~~~~~   75 (159)
T d2v8qe2           4 SVYTTFMKSHRCYDLIP-TSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKK-------QSFVGMLTITDFINILHRY   75 (159)
T ss_dssp             CHHHHHHHHSBGGGGSC-SEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTT-------TEEEEEEEHHHHHHHHHHH
T ss_pred             hHHHHHhcCCEEEeECC-CCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCC-------CcEEEEEEHHHHHHHHHhc
Confidence            46789999999999875 578999999999999999999999999999999866       6999999999999987654


Q ss_pred             hhHHhhhcccccccccccccccccccchhcccCCCcchhhhhhHHhhhhhhccchhhhccCCCCCccccccccchhHHhh
Q 013373          115 AELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVI  194 (444)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l  194 (444)
                      .......                                                       ....   ........   
T Consensus        76 ~~~~~~~-------------------------------------------------------~~~~---~~~~~~~~---   94 (159)
T d2v8qe2          76 YKSALVQ-------------------------------------------------------IYEL---EEHKIETW---   94 (159)
T ss_dssp             HHHHTTT-------------------------------------------------------CCCG---GGCBHHHH---
T ss_pred             cccccch-------------------------------------------------------hhhh---hhhhcccc---
Confidence            3221000                                                       0000   00000000   


Q ss_pred             hccCCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcC
Q 013373          195 LQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC  267 (444)
Q Consensus       195 ~~~~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~  267 (444)
                             .....+++    ..+++++++++++.+|+..|.+++++++||+|+++|+++|+||++||++++..+
T Consensus        95 -------~~~~~~~~----~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~~  156 (159)
T d2v8qe2          95 -------REVYLQDS----FKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLF  156 (159)
T ss_dssp             -------HHHHSSSS----CCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHH
T ss_pred             -------cceeeeee----ccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHHH
Confidence                   00112223    367999999999999999999999999999997668999999999999998754

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.77  E-value=1.1e-18  Score=144.66  Aligned_cols=113  Identities=20%  Similarity=0.392  Sum_probs=100.5

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  372 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  372 (444)
                      +++++++++++.+|+++|.+++++++||++  +++++|++|.+|+++.+....  ......++.++|+.           
T Consensus        14 ~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~--~~~~vGiit~~Di~~~~~~~~--~~~~~~~v~~im~~-----------   78 (127)
T d2rc3a1          14 TVVAIGPDDSVFNAMQKMAADNIGALLVMK--DEKLVGILTERDFSRKSYLLD--KPVKDTQVKEIMTR-----------   78 (127)
T ss_dssp             CCCEECTTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHGGGSS--SCGGGSBGGGTSBC-----------
T ss_pred             ccEEECCcCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEccchhhhhhhhc--ccccceeEeeeccc-----------
Confidence            789999999999999999999999999998  689999999999987654211  12346789999985           


Q ss_pred             CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhH
Q 013373          373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI  423 (444)
Q Consensus       373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~  423 (444)
                       ++.++++++++.+++++|.+++++++||+|+ | +++|+||.+||++.++
T Consensus        79 -~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~-~~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1          79 -QVAYVDLNNTNEDCMALITEMRVRHLPVLDD-G-KVIGLLSIGDLVKDAI  126 (127)
T ss_dssp             -SCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHHHHHH
T ss_pred             -eeEEeccCccHHHHHHHHHHCCCcEEEEEEC-C-EEEEEEEHHHHHHHHh
Confidence             8999999999999999999999999999984 5 9999999999999876

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.77  E-value=7.5e-19  Score=144.95  Aligned_cols=122  Identities=19%  Similarity=0.310  Sum_probs=105.5

Q ss_pred             CcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCccc
Q 013373          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (444)
Q Consensus       203 ~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~  282 (444)
                      +|++|+|.    ++++++.+++++.+|++.|.+++++++||+|++ ++++|++|..|+++.+..... .    .....++
T Consensus         1 tt~~diM~----~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-~~~~Giit~~Di~~~~~~~~~-~----~~~~~v~   70 (123)
T d1y5ha3           1 TTARDIMN----AGVTCVGEHETLTAAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGL-D----PNTATAG   70 (123)
T ss_dssp             CCHHHHSE----ETCCCEETTSBHHHHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGTC-C----TTTSBHH
T ss_pred             CCHHHhcC----CCCcEECCcCcHHHHHHHHHHcCCCceEEEecc-chhhhhhhhhhHhhhhhhcCC-C----cccceEE
Confidence            57899998    679999999999999999999999999999987 899999999999875443211 1    1345667


Q ss_pred             ccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHh
Q 013373          283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  341 (444)
Q Consensus       283 ~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l  341 (444)
                      +    +|++ ++.++.+++++.+|++.|.+++++++||+|  +++++|+||.+||++.+
T Consensus        71 ~----im~~-~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd--~~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          71 E----LARD-SIYYVDANASIQEMLNVMEEHQVRRVPVIS--EHRLVGIVTEADIARHL  122 (123)
T ss_dssp             H----HHTT-CCCCEETTCCHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHTC
T ss_pred             E----Eeec-cceeeeecchHHHHHHHHHHcCceEEEEEE--CCEEEEEEEHHHHHhhC
Confidence            7    6876 899999999999999999999999999998  57999999999998864

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=2.7e-18  Score=145.57  Aligned_cols=122  Identities=13%  Similarity=0.232  Sum_probs=104.9

Q ss_pred             CCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCc------------cccccccCcH
Q 013373          288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE------------LFSNFRQLTV  355 (444)
Q Consensus       288 im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~------------~~~~~~~~~v  355 (444)
                      +|+. +++++.+++++.+|++.|.+++++++||+|+ +++++|++|.+|+++++....            ....+...++
T Consensus         9 ~m~~-~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~-~~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (145)
T d1o50a3           9 LISL-KPTVVEEDTPIEEIVDRILEDPVTRTVYVAR-DNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKNA   86 (145)
T ss_dssp             SSCC-CCEEECTTCBHHHHHHHHHHSTTCCEEEEEE-TTEEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCSSCBH
T ss_pred             hCCC-CCEEECCcCcHHHHHHHHHHcCCceEEEecc-CcceeeeeccchhhhhhhcccccccchhHHHHhhhhhccccCH
Confidence            6776 8899999999999999999999999999998 899999999999988764211            1112334456


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013373          356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  425 (444)
Q Consensus       356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e  425 (444)
                      .++|.             +++++.+++++.+|+++|.+++++++||||++| +++|+||.+||++++..+
T Consensus        87 ~~~~~-------------~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g-~i~Gvit~~dil~~l~~~  142 (145)
T d1o50a3          87 SEIML-------------DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKG-EIVGDLNSLEILLALWKG  142 (145)
T ss_dssp             HHHCB-------------CCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHHHS
T ss_pred             HHHcC-------------CCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCC-eEEEEEEHHHHHHHHHhc
Confidence            66665             678999999999999999999999999999987 999999999999999864

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.76  E-value=2.4e-18  Score=141.21  Aligned_cols=118  Identities=21%  Similarity=0.339  Sum_probs=105.1

Q ss_pred             ccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhc
Q 013373          281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN  360 (444)
Q Consensus       281 v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~  360 (444)
                      |++    +|++ ++.++++++|+.+|++.|.+++++.+||++  +|+++|++|.+|+++.+.....   +...++.++|+
T Consensus         2 V~d----iM~~-~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~--~~~~~Gvit~~Di~~~l~~~~~---~~~~~v~~~m~   71 (120)
T d1pbja3           2 VED----VMVT-DVDTIDITASLEDVLRNYVENAKGSSVVVK--EGVRVGIVTTWDVLEAIAEGDD---LAEVKVWEVME   71 (120)
T ss_dssp             HHH----HCBC-SCCEEETTCBHHHHHHHHHHHCCCEEEEEE--TTEEEEEEEHHHHHHHHHHTCC---TTTSBHHHHCB
T ss_pred             hHH----hCCC-CCeEECCcCcHHHHHHHHHHcCceEEEEEe--CCcEEEEEEeeecccccccccc---ccceeEeeecc
Confidence            556    7886 899999999999999999999999999998  5899999999999988764332   45678999998


Q ss_pred             ccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013373          361 AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF  422 (444)
Q Consensus       361 ~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l  422 (444)
                      .            ++.++++++++.+|++.|.+++++++||+++ | +++|+||.+||+++.
T Consensus        72 ~------------~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~~-~-~l~Givt~~Dil~A~  119 (120)
T d1pbja3          72 R------------DLVTISPRATIKEAAEKMVKNVVWRLLVEED-D-EIIGVISATDILRAK  119 (120)
T ss_dssp             C------------GGGEECTTSCHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHHHHH
T ss_pred             c------------ccccccchhHHHHHHHHHHHcCCeEEEEEEC-C-EEEEEEEHHHHHhcC
Confidence            5            8899999999999999999999999999874 5 999999999999874

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.76  E-value=1.3e-18  Score=146.83  Aligned_cols=127  Identities=23%  Similarity=0.322  Sum_probs=111.9

Q ss_pred             CcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCc---cccccccCcH
Q 013373          279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE---LFSNFRQLTV  355 (444)
Q Consensus       279 ~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~---~~~~~~~~~v  355 (444)
                      .||++    +|++ +++++++++++.+|++.|.+++++++||+++ +++++|+++.+|+++.+....   ........++
T Consensus         2 ~~V~~----iMt~-~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~-~~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v   75 (141)
T d3ddja1           2 FPVKV----FMST-KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD-DNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVV   75 (141)
T ss_dssp             CBHHH----HSBC-SCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBH
T ss_pred             EeeHH----hCcC-CCeEEcCcCcHHHHHHHHHHcCCCeeecccc-cCccccccccccchhhhhccccccccccccCCCH
Confidence            36788    7987 8999999999999999999999999999998 899999999999988764211   1112346689


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      .++|..            +++++++++++.++++.|.+++++++||+|++| +++|+||++||++.+.+
T Consensus        76 ~~im~~------------~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~-~~iGiIt~~Dil~~l~~  131 (141)
T d3ddja1          76 KDVMVT------------NLVTIDELASVNRAAAEMIVKRIGSLLILNKDN-TIRGIITERDLLIALHH  131 (141)
T ss_dssp             HHHSBC------------CCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHHH
T ss_pred             HHHhCc------------ccccccccchhhHHHHHHHHcCCCEEEEEccCC-EEEEEEEHHHHHHHHHH
Confidence            999985            889999999999999999999999999999987 99999999999999875

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=2.2e-18  Score=141.68  Aligned_cols=119  Identities=15%  Similarity=0.228  Sum_probs=107.5

Q ss_pred             cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHh
Q 013373          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFM  359 (444)
Q Consensus       280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m  359 (444)
                      .|++    +|++ ++.++.+++++.+|+++|.+++.+.+||+|+ +++++|+++.+|++++.         ...++.++|
T Consensus         2 ~v~~----~m~~-~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~-~~~~~Gii~~~dl~~~~---------~~~~v~~~~   66 (121)
T d1vr9a3           2 KVKK----WVTQ-DFPMVEESATVRECLHRMRQYQTNECIVKDR-EGHFRGVVNKEDLLDLD---------LDSSVFNKV   66 (121)
T ss_dssp             BGGG----GCBS-CSCEEETTCBHHHHHHHHHHTTSSEEEEECT-TSBEEEEEEGGGGTTSC---------TTSBSGGGC
T ss_pred             Cchh----hhcC-CCeEECCCCCHHHHHHhhhhcCcEEEEEEeC-CceeEEEeehhhhhhhh---------ccccccccc
Confidence            4566    6876 8999999999999999999999999999997 89999999999997542         245788898


Q ss_pred             cccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCC
Q 013373          360 NAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP  426 (444)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~  426 (444)
                      ..            +++++++++++.+++++|.+++..++||||++| +++|+||..||++++..+.
T Consensus        67 ~~------------~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g-~~~Gvit~~dil~~l~~~l  120 (121)
T d1vr9a3          67 SL------------PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEM-RLKGAVSLHDFLEALIEAL  120 (121)
T ss_dssp             BC------------TTCCEETTSBHHHHHHHHHHCCCSEEEEECTTC-BEEEEEEHHHHHHHHHHSC
T ss_pred             cC------------ccEEECCCCCHHHHHHHHHhcCceeeeeECCCC-eEEEEEEHHHHHHHHHHhc
Confidence            84            889999999999999999999999999999998 9999999999999998754

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.76  E-value=2.9e-18  Score=143.17  Aligned_cols=126  Identities=18%  Similarity=0.244  Sum_probs=108.2

Q ss_pred             CcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcc--ccccccCcH
Q 013373          279 QPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL--FSNFRQLTV  355 (444)
Q Consensus       279 ~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~--~~~~~~~~v  355 (444)
                      .+|++    +|.+ +++.++.+++++.+|++.|.+++++++||+|+ +|+++|++|.+|+++.+.....  +......++
T Consensus         2 ~tv~~----~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~-~~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v   76 (132)
T d1yava3           2 ATVGQ----FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP-SYRLHGLIGTNMIMNSIFGLERIEFEKLDQITV   76 (132)
T ss_dssp             CBHHH----HSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT-TCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBH
T ss_pred             CCHHH----ccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeec-ccccccEEEcchhHHHhhccccccccccccccc
Confidence            45667    5632 37899999999999999999999999999998 7999999999999998864322  223456789


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      .++|+.            ++.++++++++.+++.+|.+++  .+||||++| +++|+||++||++++..
T Consensus        77 ~~~m~~------------~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~-~~~Givt~~dil~~l~~  130 (132)
T d1yava3          77 EEVMLT------------DIPRLHINDPIMKGFGMVINNG--FVCVENDEQ-VFEGIFTRRVVLKELNK  130 (132)
T ss_dssp             HHHSBC------------SCCEEETTSBHHHHHHHTTTCS--EEEEECTTC-BEEEEEEHHHHHHHHHH
T ss_pred             cccccc------------cccccccchhHHHHHHHHHhCC--EEEEEccCC-EEEEEEEHHHHHHHHHh
Confidence            999985            8899999999999999998764  599999998 99999999999999864

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.75  E-value=3.4e-19  Score=146.80  Aligned_cols=118  Identities=20%  Similarity=0.267  Sum_probs=88.4

Q ss_pred             cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHh
Q 013373          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFM  359 (444)
Q Consensus       280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m  359 (444)
                      ++++    +|++ +++++++++++.+|++.|.+++++++||+|+ +|+++|+||.+|++....         ..++.++|
T Consensus         2 ~v~d----iM~~-~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-~~~~~G~it~~dl~~~~~---------~~~~~~~~   66 (122)
T d2yzqa2           2 RVKT----IMTQ-NPVTITLPATRNYALELFKKYKVRSFPVVNK-EGKLVGIISVKRILVNPD---------EEQLAMLV   66 (122)
T ss_dssp             BHHH----HSEE-SCCCEESSCC------------CCEEEEECT-TCCEEEEEESSCC-------------------CCC
T ss_pred             Cccc----ccCC-CCEEECCcCcHHHHHHHHHHcCCcEEEEEec-cccchhhhhcchhhhhhc---------ccchhhcc
Confidence            4566    6886 8999999999999999999999999999998 899999999999976532         34678888


Q ss_pred             cccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013373          360 NAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  425 (444)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e  425 (444)
                      ..            ++++|++++++.++++.|.+++++++||||++| +++|+||++||++.+..+
T Consensus        67 ~~------------~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~-~liGiit~~dil~~~~~~  119 (122)
T d2yzqa2          67 KR------------DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKG-KPVGILTVGDIIRRYFAK  119 (122)
T ss_dssp             BS------------CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHTTTT
T ss_pred             cc------------ceeecchhhHHHHHHHHHHHcCcEEEEEEeCCC-EEEEEEEHHHHHHHHHhH
Confidence            74            889999999999999999999999999999987 999999999999988764

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.75  E-value=1.3e-17  Score=138.21  Aligned_cols=123  Identities=13%  Similarity=0.274  Sum_probs=106.9

Q ss_pred             cHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccc
Q 013373          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  283 (444)
Q Consensus       204 ~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~  283 (444)
                      ||++||.. +.++++++.+++++.+|+++|.+++++++||+++  ++++|++|..|+++.+......     ....++++
T Consensus         3 tV~dim~~-k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~--~~~vGiit~~Di~~~~~~~~~~-----~~~~~v~~   74 (127)
T d2rc3a1           3 TVKHLLQE-KGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKD--EKLVGILTERDFSRKSYLLDKP-----VKDTQVKE   74 (127)
T ss_dssp             BHHHHHHH-HCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHGGGSSSC-----GGGSBGGG
T ss_pred             cHHHHHcc-CCCccEEECCcCcHHHHHHHHHHcCCCEEEEEEC--CeEEEEEEccchhhhhhhhccc-----ccceeEee
Confidence            68999874 2357999999999999999999999999999984  7999999999998876433211     24568888


Q ss_pred             cccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHh
Q 013373          284 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  341 (444)
Q Consensus       284 l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l  341 (444)
                          +|+. ++.++.+++++.+|++.|.+++++++||+|  +|+++|+||.+|+++.+
T Consensus        75 ----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~~GiIt~~Dil~~~  125 (127)
T d2rc3a1          75 ----IMTR-QVAYVDLNNTNEDCMALITEMRVRHLPVLD--DGKVIGLLSIGDLVKDA  125 (127)
T ss_dssp             ----TSBC-SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHH
T ss_pred             ----eccc-eeEEeccCccHHHHHHHHHHCCCcEEEEEE--CCEEEEEEEHHHHHHHH
Confidence                7886 899999999999999999999999999998  68999999999999875

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.75  E-value=9.1e-18  Score=139.11  Aligned_cols=122  Identities=23%  Similarity=0.391  Sum_probs=110.1

Q ss_pred             CCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcc
Q 013373          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI  281 (444)
Q Consensus       202 ~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v  281 (444)
                      ...|+++|.    .+++++.+++++.+|+++|.+++++++||+|+  ++++|++|..|+++.+.+...       ...++
T Consensus         3 ~~~V~d~m~----~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~--~~~~Givt~~dl~~~~~~~~~-------~~~~v   69 (127)
T d2ef7a1           3 EEIVKEYMK----TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG--NKPVGIITERDIVKAIGKGKS-------LETKA   69 (127)
T ss_dssp             CCBGGGTSB----CSCCEEETTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHTTCC-------TTCBG
T ss_pred             ccCHHHhCC----CCCeEECCcCcHHHHHHHHHHcCCceEEeecc--cchhhhcchhHHHHHHHhhcc-------ccchh
Confidence            456899998    77999999999999999999999999999986  689999999999998876532       34678


Q ss_pred             cccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       282 ~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      .+    +|.+ ++.++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|+++++.
T Consensus        70 ~~----~~~~-~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~lvGiit~~Dll~~i~  124 (127)
T d2ef7a1          70 EE----FMTA-SLITIREDSPITGALALMRQFNIRHLPVVDD-KGNLKGIISIRDITRAID  124 (127)
T ss_dssp             GG----TSEE-CCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred             hh----hhhh-hccccccccchhHHHHHHHHcCceEEEEEeC-CCeEEEEEEHHHHHHHHH
Confidence            88    7876 8999999999999999999999999999998 899999999999999875

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.74  E-value=4e-18  Score=141.32  Aligned_cols=114  Identities=21%  Similarity=0.336  Sum_probs=102.9

Q ss_pred             CCCCCCceEecCCCcHHHHHHHHHHcC-----CCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhccc
Q 013373          288 FMSSDEVITIQSNELILEAFKRMKDNN-----IGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAV  362 (444)
Q Consensus       288 im~~~~~~~v~~~~sl~ea~~~m~~~~-----~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~  362 (444)
                      +|++ ++++++++.++.+|++.|.+++     ++.+||+|+ +++++|+++.++++..         ....++.++|++ 
T Consensus         6 iM~~-d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~-~~~l~G~v~~~~l~~~---------~~~~~v~~im~~-   73 (127)
T d2ouxa2           6 IMTT-EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ-ENHLVGVISLRDLIVN---------DDDTLIADILNE-   73 (127)
T ss_dssp             HCBS-CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT-TCBEEEEEEHHHHTTS---------CTTSBHHHHSBS-
T ss_pred             hCCC-CcEEECCCCcHHHHHHHhHhhcccccceeeeEEEec-CCeEEEEEEeeccccc---------cccEEhhhhccC-
Confidence            6887 8999999999999999998874     789999998 8999999999998643         135689999985 


Q ss_pred             CCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013373          363 VPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  425 (444)
Q Consensus       363 ~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e  425 (444)
                                 +++++++++++.+|++.|.+++++++||||++| +++|+||..||++.+-.|
T Consensus        74 -----------~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g-~lvGiIt~~Dil~~i~ee  124 (127)
T d2ouxa2          74 -----------RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDD-HLLGIVTVDDIIDVIDDE  124 (127)
T ss_dssp             -----------CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEEHHHHHHHHHHH
T ss_pred             -----------CCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCC-EEEEEEEHHHHHHHHHHH
Confidence                       889999999999999999999999999999987 999999999999987643

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.74  E-value=3.2e-18  Score=146.99  Aligned_cols=130  Identities=15%  Similarity=0.258  Sum_probs=108.7

Q ss_pred             CCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCC---------
Q 013373          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD---------  271 (444)
Q Consensus       201 ~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~---------  271 (444)
                      ++.++.++|.    ++++.+.+++++.+|+++|.+++++++||+|++ |+++|++|..|+++.+.......         
T Consensus         2 ~~~~v~~~m~----r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~-~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~   76 (156)
T d2yzqa1           2 KGVEIEPYYQ----RYVSIVWEGTPLKAALKALLLSNSMALPVVDSE-GNLVGIVDETDLLRDSEIVRIMKSTELAASSE   76 (156)
T ss_dssp             GGCBSTTTSB----SCCCCEETTSBHHHHHHHHHTCSSSEEEEECTT-SCEEEEEEGGGGGGCGGGCC------------
T ss_pred             CCCCHHHHhc----CCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCC-CCceeEEeeeechhhhcccccccccccccchh
Confidence            4567889998    789999999999999999999999999999987 89999999999976554321100         


Q ss_pred             ---------------cccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHH
Q 013373          272 ---------------WFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRD  336 (444)
Q Consensus       272 ---------------~~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~D  336 (444)
                                     ........++.+    +|++ ++.++.+++++.++++.|.+++++++||+|+ +|+++|++|.+|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~v~~----~m~~-~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~-~g~lvGivt~~D  150 (156)
T d2yzqa1          77 EEWILESHPTLLFEKFELQLPNKPVAE----IMTR-DVIVATPHMTVHEVALKMAKYSIEQLPVIRG-EGDLIGLIRDFD  150 (156)
T ss_dssp             --------------------CCCBGGG----TCBS-SCCCBCTTSBHHHHHHHHHHHTCSEEEEEET-TTEEEEEEEHHH
T ss_pred             hhhhhhhhhhhhHHHhhhcccCCEeeh----hccc-CceEECcccccHHHHHHHHHcCeeEEEEEeC-CCEEEEEEEHHH
Confidence                           011133457778    7886 8999999999999999999999999999998 899999999999


Q ss_pred             HHHHh
Q 013373          337 IRHLL  341 (444)
Q Consensus       337 ll~~l  341 (444)
                      |++++
T Consensus       151 il~~l  155 (156)
T d2yzqa1         151 LLKVL  155 (156)
T ss_dssp             HGGGG
T ss_pred             HHHHh
Confidence            98875

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.74  E-value=2.1e-17  Score=137.86  Aligned_cols=123  Identities=18%  Similarity=0.299  Sum_probs=109.8

Q ss_pred             CcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCccc
Q 013373          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (444)
Q Consensus       203 ~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~  282 (444)
                      .+|+++|.    .+++++++++++.+|++.|.+++++++||+|++ ++++|++|..|+++.+.....      ....+++
T Consensus         5 ~pV~~im~----~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~-~~~~Giit~~di~~~~~~~~~------~~~~~v~   73 (132)
T d2yzia1           5 APIKVYMT----KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDD-GNVVGFFTKSDIIRRVIVPGL------PYDIPVE   73 (132)
T ss_dssp             SBGGGTCB----CCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCC------CTTSBGG
T ss_pred             CcHHHHcC----CCCeEECCcCcHHHHHHHHHHcCCcEEEEeccc-ceeeeeeeHHHHHHHHhhccC------ccceeEe
Confidence            46899998    779999999999999999999999999999987 899999999999987765421      1457899


Q ss_pred             ccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373          283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (444)
Q Consensus       283 ~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~  343 (444)
                      +    +|.+ ++.++.+++++.++++.|.+++++++||++  +|+++|+||.+|+++++..
T Consensus        74 ~----im~~-~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~--~~~~vGivt~~Dil~a~~~  127 (132)
T d2yzia1          74 R----IMTR-NLITANVNTPLGEVLRKMAEHRIKHILIEE--EGKIVGIFTLSDLLEASRR  127 (132)
T ss_dssp             G----TCBC-SCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred             e----cccc-cccccCcchHHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHHH
Confidence            9    7886 899999999999999999999999999887  6899999999999998753

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.74  E-value=1.1e-17  Score=138.35  Aligned_cols=112  Identities=21%  Similarity=0.392  Sum_probs=96.0

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeCC-CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQ-QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK  371 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~-~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~  371 (444)
                      +++++++++++.+|+++|.+++++++||+|+. +++++|++|.+|+++....        ..+....+..          
T Consensus         6 dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~--------~~~~~~~~~~----------   67 (126)
T d1zfja4           6 DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDY--------NAPISEHMTS----------   67 (126)
T ss_dssp             SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCS--------SSBTTTSCCC----------
T ss_pred             CceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhcc--------CCceeeeeec----------
Confidence            67899999999999999999999999999852 5789999999999876432        1222233321          


Q ss_pred             CCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          372 VNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       372 ~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                       .+++++++++++.+|+++|.+++++++||||++| +++|+||++||++.+..
T Consensus        68 -~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g-~lvGiiT~~Dil~~~~~  118 (126)
T d1zfja4          68 -EHLVTAAVGTDLETAERILHEHRIEKLPLVDNSG-RLSGLITIKDIEKVIEF  118 (126)
T ss_dssp             -SCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTS-BEEEEEEHHHHHHHHHC
T ss_pred             -cceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCC-eEEEEEEHHHHHHHhhC
Confidence             3789999999999999999999999999999988 99999999999998875

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.74  E-value=9.7e-18  Score=141.75  Aligned_cols=124  Identities=14%  Similarity=0.272  Sum_probs=109.5

Q ss_pred             CcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCccc
Q 013373          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (444)
Q Consensus       203 ~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~  282 (444)
                      .+|+++|.    .++.++++++++.+|++.|.+++++++||+|++ ++++|++|..|+++.+......     ....+++
T Consensus         3 m~v~dim~----~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~-~~~~Giit~~di~~~~~~~~~~-----~~~~~v~   72 (142)
T d1pvma4           3 MRVEKIMN----SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNKK-----PDEVPIR   72 (142)
T ss_dssp             CBGGGTSB----TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCCC-----GGGSBGG
T ss_pred             EEHHHhCC----CCCcEECCcCcHHHHHHHHHHCCCceEeeeccC-CcccceEEeechhhhhhhhccc-----ccccccc
Confidence            36889998    679999999999999999999999999999987 8999999999998766533211     1456888


Q ss_pred             ccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       283 ~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      +    +|+. +++++.+++++.+++++|.+++++++||+|+ +|+++|+||.+||++++.
T Consensus        73 ~----im~~-~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~-~g~l~Giit~~Dil~~l~  126 (142)
T d1pvma4          73 L----VMRK-PIPKVKSDYDVKDVAAYLSENGLERCAVVDD-PGRVVGIVTLTDLSRYLS  126 (142)
T ss_dssp             G----TSBS-SCCEEETTCBHHHHHHHHHHHTCSEEEEECT-TCCEEEEEEHHHHTTTSC
T ss_pred             c----cccc-ccccccchhhHHHHHHHHHHcCCcEEEEEec-CCEEEEEEEHHHHHHHHh
Confidence            8    7886 8999999999999999999999999999998 899999999999988765

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.74  E-value=7.7e-18  Score=141.85  Aligned_cols=128  Identities=17%  Similarity=0.311  Sum_probs=109.2

Q ss_pred             CcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCC--cccccccCc
Q 013373          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD--WFDIIASQP  280 (444)
Q Consensus       203 ~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~--~~~~~~~~~  280 (444)
                      .+++|+|.    ++++++.+++++.+|++.|.+++++++||+|++ ++++|++|..|+++++.......  ........+
T Consensus         2 i~v~diM~----~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~   76 (139)
T d2o16a3           2 IKVEDMMT----RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETP   76 (139)
T ss_dssp             CBGGGTSE----ESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC---------CCCB
T ss_pred             EEHHHhCc----CCCeEECCcCCHHHHHHHHHHcCCCeeeeeccc-ccccccccHHHHHHHHHhhhhhhhcccccccccc
Confidence            36889998    669999999999999999999999999999987 89999999999998876532111  111234568


Q ss_pred             ccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       281 v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      +++    +|++ ++.++++++++.+|+++|.+++++++||+|  +|+++|+||.+|+++++.
T Consensus        77 v~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~lvGiit~~Dil~~~~  131 (139)
T d2o16a3          77 LFE----VMHT-DVTSVAPQAGLKESAIYMQKHKIGCLPVVA--KDVLVGIITDSDFVTIAI  131 (139)
T ss_dssp             HHH----HSCS-CEEEBCTTSBHHHHHHHHHHTTCSCEEEEE--TTEEEEEECHHHHHHHHH
T ss_pred             hhH----hhcc-ccccccccchHHHHHHHHHHcCceEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence            899    7886 899999999999999999999999999999  589999999999999875

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.74  E-value=4.2e-18  Score=149.70  Aligned_cols=159  Identities=18%  Similarity=0.191  Sum_probs=117.5

Q ss_pred             HHHHHHHhhcCCccCCCCCCCCCeEEEeCCCCHHHHHHHHHHCCCccCceecCCCCCCCCcccceeEEEehhHHHHHHHh
Q 013373           34 QETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLE  113 (444)
Q Consensus        34 ~~~~~~~~~~~~v~~~~~~~~~~~i~v~~~~si~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~~Giv~~~di~~~~l~  113 (444)
                      .+.++.|+....+++++. ++.++++++++.|+.+|+++|.++++.++||+|++.       ++++|+||..||+.+++.
T Consensus        10 ~~~i~~fl~~~~~~dvm~-~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~-------~~~vGiis~~Di~~~l~~   81 (179)
T d2ooxe1          10 LKEIQAFIRSRTSYDVLP-TSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEA-------NKFAGLLTMADFVNVIKY   81 (179)
T ss_dssp             HHHHHHHHHHSBHHHHSC-SEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTT-------TEEEEEECHHHHHHHHHH
T ss_pred             HHHHHHHHcCCEeeeeCC-CCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCC-------CeeEEEEeechHHHHHHh
Confidence            456788889988988775 467999999999999999999999999999999876       699999999999998765


Q ss_pred             hhhHHhhhcccccccccccccccccccchhcccCCCcchhhhhhHHhhhhhhccchhhhccCCCCCccccccccchhHHh
Q 013373          114 TAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKV  193 (444)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (444)
                      .......                             +.....                          . ..........
T Consensus        82 ~~~~~~~-----------------------------~~~~~~--------------------------~-~~~~~~~~~~  105 (179)
T d2ooxe1          82 YYQSSSF-----------------------------PEAIAE--------------------------I-DKFRLLGLRE  105 (179)
T ss_dssp             HHHHCSC-----------------------------GGGGGG--------------------------G-GGSBHHHHHH
T ss_pred             ccccccc-----------------------------hhhhhh--------------------------h-hccchhhhcc
Confidence            4432110                             000000                          0 0000000000


Q ss_pred             hhccCCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCC----CCcEEEEEeHHHHHHHhhcCC
Q 013373          194 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG----TPDIKNYITQSAVVQGLEGCK  268 (444)
Q Consensus       194 l~~~~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~----~~~l~Givt~~di~~~l~~~~  268 (444)
                              ......+|.    .+++++.+++++.+|+..|.+++++++||+|++    +++++|++|++||++++..+.
T Consensus       106 --------~~~~~~~~~----~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~~~~  172 (179)
T d2ooxe1         106 --------VERKIGAIP----PETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNC  172 (179)
T ss_dssp             --------HHHHTTCSC----SSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHTTC
T ss_pred             --------cceeeeecc----cCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHHHhh
Confidence                    011222333    679999999999999999999999999999864    236999999999999998663

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.73  E-value=9.5e-18  Score=139.96  Aligned_cols=128  Identities=16%  Similarity=0.275  Sum_probs=110.8

Q ss_pred             CcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCccc
Q 013373          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (444)
Q Consensus       203 ~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~  282 (444)
                      .+|+++|...  ++++.+.+++++.+|++.|.+++++++||+|++ |+++|++|..|+++++..... .........+++
T Consensus         2 ~tv~~~mip~--~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~-~~~vGiit~~di~~~~~~~~~-~~~~~~~~~~v~   77 (132)
T d1yava3           2 ATVGQFMIEA--DKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLER-IEFEKLDQITVE   77 (132)
T ss_dssp             CBHHHHSEEG--GGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSS-BCGGGTTTSBHH
T ss_pred             CCHHHccccc--cceEEEcCCCCHHHHHHHHHhhCCCceEEeecc-cccccEEEcchhHHHhhcccc-cccccccccccc
Confidence            4789999643  679999999999999999999999999999987 899999999999999876532 233445567888


Q ss_pred             ccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       283 ~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      +    +|+. ++.++.+++++.+++..|.+++  .+||+|+ +|+++|+||.+|+++++.
T Consensus        78 ~----~m~~-~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~-~~~~~Givt~~dil~~l~  129 (132)
T d1yava3          78 E----VMLT-DIPRLHINDPIMKGFGMVINNG--FVCVEND-EQVFEGIFTRRVVLKELN  129 (132)
T ss_dssp             H----HSBC-SCCEEETTSBHHHHHHHTTTCS--EEEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred             c----cccc-cccccccchhHHHHHHHHHhCC--EEEEEcc-CCEEEEEEEHHHHHHHHH
Confidence            8    6876 8999999999999999998764  5999998 899999999999999875

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.73  E-value=5.7e-18  Score=142.87  Aligned_cols=128  Identities=16%  Similarity=0.249  Sum_probs=112.1

Q ss_pred             cHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccc
Q 013373          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  283 (444)
Q Consensus       204 ~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~  283 (444)
                      +|+++|.    .+++++++++|+.+|+++|.+++++++||+|.+ +++.|+++..|+.+.+...............++++
T Consensus         3 ~V~~iMt----~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~-~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~   77 (141)
T d3ddja1           3 PVKVFMS----TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDD-NKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKD   77 (141)
T ss_dssp             BHHHHSB----CSCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHH
T ss_pred             eeHHhCc----CCCeEEcCcCcHHHHHHHHHHcCCCeeeccccc-CccccccccccchhhhhccccccccccccCCCHHH
Confidence            6899998    679999999999999999999999999999987 89999999999998876432222222335678899


Q ss_pred             cccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          284 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       284 l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                          +|++ +++++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|+++.+.
T Consensus        78 ----im~~-~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~-~~~~iGiIt~~Dil~~l~  130 (141)
T d3ddja1          78 ----VMVT-NLVTIDELASVNRAAAEMIVKRIGSLLILNK-DNTIRGIITERDLLIALH  130 (141)
T ss_dssp             ----HSBC-CCCBCCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred             ----HhCc-ccccccccchhhHHHHHHHHcCCCEEEEEcc-CCEEEEEEEHHHHHHHHH
Confidence                7886 8999999999999999999999999999998 899999999999998875

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=6.2e-19  Score=149.58  Aligned_cols=123  Identities=20%  Similarity=0.306  Sum_probs=106.8

Q ss_pred             CCCCCCceEecCCCcHHHHHHHHHHcC-----CCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhccc
Q 013373          288 FMSSDEVITIQSNELILEAFKRMKDNN-----IGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAV  362 (444)
Q Consensus       288 im~~~~~~~v~~~~sl~ea~~~m~~~~-----~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~  362 (444)
                      +|++ +++++++++|+.+|++.|.+++     ++.+||+|+ +|+++|+++.+|++...         ...++.++|.. 
T Consensus         6 iM~~-~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~-~~~l~G~v~~~dl~~~~---------~~~~v~~im~~-   73 (144)
T d2yvxa2           6 LMTP-EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE-KGRLKGVLSLRDLIVAD---------PRTRVAEIMNP-   73 (144)
T ss_dssp             GCBS-CCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCT-TCBBCCBCBHHHHTTSC---------TTCBSTTTSBS-
T ss_pred             ccCC-CCEEECCCCcHHHHHHHHHHhcccccceeeeEEecC-CCCEecccchhhhhhcc---------cccchHHhccc-
Confidence            7997 8999999999999999998774     788999998 89999999999986541         24578889985 


Q ss_pred             CCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCccchhhh
Q 013373          363 VPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDNYF  434 (444)
Q Consensus       363 ~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~~~~~~~  434 (444)
                                 +++++++++++.+|++.|.+++++++||||++| +++|+||.+||++.+..+....+..+.
T Consensus        74 -----------~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g-~lvGiIt~~Dil~~l~~e~~ed~~~~~  133 (144)
T d2yvxa2          74 -----------KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEG-RLVGIVTVDDVLDVLEAEATEDIHKLG  133 (144)
T ss_dssp             -----------SCCCEESSCCHHHHHHHHHHSCCSEEEEECSSC-BEEEEEEHHHHHHHHHHHHHHHHHTSS
T ss_pred             -----------CCccCCCCChHHHHHHHHHHcCCCEEEEEeECC-EEEEEEEHHHHHHHHHHHhHHHHHHhc
Confidence                       899999999999999999999999999999987 999999999999988765444444443

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.72  E-value=2.7e-17  Score=134.84  Aligned_cols=118  Identities=19%  Similarity=0.223  Sum_probs=106.3

Q ss_pred             cHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccc
Q 013373          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  283 (444)
Q Consensus       204 ~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~  283 (444)
                      +|+|+|.    .+++++++++|+.+|++.|.+++++.+||.++  ++++|++|..|+++.+.....      +.+.++.+
T Consensus         1 kV~diM~----~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~--~~~~Gvit~~Di~~~l~~~~~------~~~~~v~~   68 (120)
T d1pbja3           1 RVEDVMV----TDVDTIDITASLEDVLRNYVENAKGSSVVVKE--GVRVGIVTTWDVLEAIAEGDD------LAEVKVWE   68 (120)
T ss_dssp             CHHHHCB----CSCCEEETTCBHHHHHHHHHHHCCCEEEEEET--TEEEEEEEHHHHHHHHHHTCC------TTTSBHHH
T ss_pred             ChHHhCC----CCCeEECCcCcHHHHHHHHHHcCceEEEEEeC--CcEEEEEEeeecccccccccc------ccceeEee
Confidence            4789998    77999999999999999999999999999985  799999999999998876532      24568888


Q ss_pred             cccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHH
Q 013373          284 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL  340 (444)
Q Consensus       284 l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~  340 (444)
                          +|++ ++.++++++++.+|++.|.+++++++||++  +|+++|++|.+|++++
T Consensus        69 ----~m~~-~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~--~~~l~Givt~~Dil~A  118 (120)
T d1pbja3          69 ----VMER-DLVTISPRATIKEAAEKMVKNVVWRLLVEE--DDEIIGVISATDILRA  118 (120)
T ss_dssp             ----HCBC-GGGEECTTSCHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHH
T ss_pred             ----eccc-ccccccchhHHHHHHHHHHHcCCeEEEEEE--CCEEEEEEEHHHHHhc
Confidence                7886 899999999999999999999999999987  6899999999999987

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.72  E-value=9.3e-18  Score=140.48  Aligned_cols=124  Identities=22%  Similarity=0.290  Sum_probs=106.9

Q ss_pred             cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc-------cccc
Q 013373          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS-------NFRQ  352 (444)
Q Consensus       280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~-------~~~~  352 (444)
                      +|++    +|.+ +++++++++++.+|++.|.+++++++||+|+   +++|+++..|+++.+.......       ....
T Consensus         2 ~V~~----lM~~-~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~---~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (135)
T d3ddja2           2 NIET----LMIK-NPPILSKEDRLGSAFKKINEGGIGRIIVANE---KIEGLLTTRDLLSTVESYCKDSCSQGDLYHIST   73 (135)
T ss_dssp             SGGG----TCEE-SCCEECTTSBHHHHHHHTTGGGCCEEEEESS---SEEEEEEHHHHHGGGTTCC---CCHHHHHHHHT
T ss_pred             EeeE----EeeC-CCeEECCCCcHHHHHHHHHHhCCeEEEEEec---ceeceeeccchhhhhccccccchhhhhcccccc
Confidence            5677    7886 7899999999999999999999999999973   5999999999998875422111       2345


Q ss_pred             CcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          353 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       353 ~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      .+++++|..            +++++++++++.+|+++|.+++++++||+|++| +++|+||++||++++..
T Consensus        74 ~~v~~im~~------------~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g-~lvGiit~~Dil~~~~~  132 (135)
T d3ddja2          74 TPIIDYMTP------------NPVTVYNTSDEFTAINIMVTRNFGSLPVVDIND-KPVGIVTEREFLLLYKD  132 (135)
T ss_dssp             SBGGGTSEE------------SCCCEETTSCHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHGGGGGG
T ss_pred             CCHHHHhCC------------ccceEEeccccchhhhhhhhcceeEEEEEeCCC-EEEEEEEHHHHHHHHHH
Confidence            678888885            889999999999999999999999999999998 99999999999998763

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.70  E-value=3.8e-17  Score=135.94  Aligned_cols=121  Identities=20%  Similarity=0.239  Sum_probs=101.8

Q ss_pred             cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCC-CCeEEEEEeHHHHHHHhcCCccccccccCcHHHH
Q 013373          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ-QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDF  358 (444)
Q Consensus       280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~-~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~  358 (444)
                      +|++    +|++ +++++++++++.+|++.|.+++++++||++.+ +++++|+++..|+++.+.....    ....+...
T Consensus         2 ~V~d----im~~-~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~----~~~~~~~~   72 (131)
T d2riha1           2 RTSE----LLKR-PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLD----LDGPAMPI   72 (131)
T ss_dssp             BGGG----GCCS-CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCC----TTSBSGGG
T ss_pred             CHHH----hccC-CCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccccc----cccccccc
Confidence            5677    7886 89999999999999999999999999999531 5889999999999998764322    12223333


Q ss_pred             hcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhH
Q 013373          359 MNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI  423 (444)
Q Consensus       359 m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~  423 (444)
                      +.             ++.++.+++++.+++++|.+++++++||||++| +++|+||..||++.+.
T Consensus        73 ~~-------------~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g-~l~Giit~~Dll~~~~  123 (131)
T d2riha1          73 AN-------------SPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNG-ELVGVLSIRDLCFERA  123 (131)
T ss_dssp             CB-------------CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHSCHH
T ss_pred             cc-------------cceeEeeecchHHHHHHHHHCCeEEEEEEcCCC-eEEEEEEHHHHHHHHH
Confidence            32             778999999999999999999999999999988 9999999999998754

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.69  E-value=5.8e-17  Score=139.30  Aligned_cols=141  Identities=16%  Similarity=0.236  Sum_probs=104.1

Q ss_pred             ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCC-CCeEEEEEeHHHHHHHhcCCcccc--cc--c
Q 013373          277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ-QKKIVGNVSIRDIRHLLLKPELFS--NF--R  351 (444)
Q Consensus       277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~-~~~lvGiIt~~Dll~~l~~~~~~~--~~--~  351 (444)
                      .+.+|++    +|++ +++++++++++.+|++.|.+++++++||+|+. ++.++|+++..|+++++.......  ..  .
T Consensus         9 ~~~~V~d----iM~~-~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~   83 (160)
T d2d4za3           9 YNIQVGD----IMVR-DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEE   83 (160)
T ss_dssp             SSCBTTS----SSBS-SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCS
T ss_pred             cceEHHH----hcCC-CCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhh
Confidence            3568999    8986 99999999999999999999999999999852 478999999999988875310000  00  0


Q ss_pred             cCcHHHHhc------ccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          352 QLTVRDFMN------AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       352 ~~~v~~~m~------~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      .....+...      .............+++++++++++.+++++|.+++++++||+|+ | +++||||++||++++.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d~-g-~lvGiIt~~Di~k~I~g  160 (160)
T d2d4za3          84 MLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM-G-KLVGVVALAEIQAAIEG  160 (160)
T ss_dssp             CCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHHHHHHC
T ss_pred             ccccchhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEEC-C-EEEEEEEHHHHHHHhCC
Confidence            000100000      00000001112248899999999999999999999999999985 5 99999999999998753

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.68  E-value=6.2e-17  Score=142.06  Aligned_cols=148  Identities=12%  Similarity=0.132  Sum_probs=107.7

Q ss_pred             ccCcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc-------
Q 013373          277 ASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS-------  348 (444)
Q Consensus       277 ~~~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~-------  348 (444)
                      ...+++|    +|.. .+++++.++.++.+|++.|.+++++++||+|+++++++|++|.+|+++.+.......       
T Consensus        18 ~~~~~~d----vm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~~~~~   93 (179)
T d2ooxe1          18 RSRTSYD----VLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIA   93 (179)
T ss_dssp             HHSBHHH----HSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGG
T ss_pred             cCCEeee----eCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccchhhhh
Confidence            3457788    5753 378999999999999999999999999999964689999999999988764210000       


Q ss_pred             ccccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCC----CeEEEEEeHHHHHHHhHc
Q 013373          349 NFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE----AEVVGVITLRDVISCFIF  424 (444)
Q Consensus       349 ~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~----~~lvGvIT~~DIl~~l~~  424 (444)
                      .........+......   ......++++|+++++|.++++.|.+++++++||+|++|    ++++|+||++||+++++.
T Consensus        94 ~~~~~~~~~~~~~~~~---~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~~  170 (179)
T d2ooxe1          94 EIDKFRLLGLREVERK---IGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISM  170 (179)
T ss_dssp             GGGGSBHHHHHHHHHH---TTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHT
T ss_pred             hhhccchhhhccccee---eeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHHH
Confidence            0001111111000000   000124889999999999999999999999999999654    279999999999999986


Q ss_pred             CCCccchhhhh
Q 013373          425 EPPNHLDNYFG  435 (444)
Q Consensus       425 e~~~~~~~~~~  435 (444)
                          +|.++..
T Consensus       171 ----~~~~~~~  177 (179)
T d2ooxe1         171 ----NCKETAM  177 (179)
T ss_dssp             ----TCGGGGG
T ss_pred             ----hhhHhhc
Confidence                5555443

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.68  E-value=1.6e-16  Score=135.85  Aligned_cols=133  Identities=10%  Similarity=0.159  Sum_probs=108.3

Q ss_pred             CCccCCCCCCCCCeEEEeCCCCHHHHHHHHHHCCCccCceecCCCCCCCCcccceeEEEehhHHHHHHHhhhhHHhhhcc
Q 013373           44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS  123 (444)
Q Consensus        44 ~~v~~~~~~~~~~~i~v~~~~si~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~~Giv~~~di~~~~l~~~~~~~~~~~  123 (444)
                      +|++.+.-...++++++++++|+.+|+++|.++++..+||+|.+        ++++|+|+..||++++......      
T Consensus         1 ~pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~--------~~~vG~it~~Dl~~~~~~~~~~------   66 (153)
T d2ooxe2           1 VPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSE--------GTLLNVYESVDVMHLIQDGDYS------   66 (153)
T ss_dssp             CBGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGG--------GBEEEEEEHHHHHHHHGGGCGG------
T ss_pred             CCHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeeccc--------ceEEEEEEeeeeeehhcccccc------
Confidence            57777765556789999999999999999999999999999986        5999999999999886332110      


Q ss_pred             cccccccccccccccccchhcccCCCcchhhhhhHHhhhhhhccchhhhccCCCCCccccccccchhHHhhhccCCCCCC
Q 013373          124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST  203 (444)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  203 (444)
                                                                                                  ....
T Consensus        67 ----------------------------------------------------------------------------~~~~   70 (153)
T d2ooxe2          67 ----------------------------------------------------------------------------NLDL   70 (153)
T ss_dssp             ----------------------------------------------------------------------------GGGS
T ss_pred             ----------------------------------------------------------------------------cccc
Confidence                                                                                        0022


Q ss_pred             cHHHhhhh--cCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcC
Q 013373          204 TVRSIIKS--YRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC  267 (444)
Q Consensus       204 ~v~di~~~--~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~  267 (444)
                      ++.+++..  ....+++++.+++++.++++.|.+++++++||+|++ |+++|+||..|+++++...
T Consensus        71 ~v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~-~~lvGivT~~Dil~~~~~~  135 (153)
T d2ooxe2          71 SVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDEN-LKLEGILSLADILNYIIYD  135 (153)
T ss_dssp             BHHHHHHTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTT-CBEEEEEEHHHHHHHHHSC
T ss_pred             chhhheeeeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCC-CEEEEEEEHHHHHHHHHcC
Confidence            34555542  123568899999999999999999999999999977 8999999999999988653

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.68  E-value=4e-17  Score=134.19  Aligned_cols=116  Identities=18%  Similarity=0.320  Sum_probs=86.8

Q ss_pred             cHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccc
Q 013373          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  283 (444)
Q Consensus       204 ~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~  283 (444)
                      +++++|.    ++++++.+++++.+|+++|.+++++++||+|++ |+++|++|..|++...            ...++.+
T Consensus         2 ~v~diM~----~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-~~~~G~it~~dl~~~~------------~~~~~~~   64 (122)
T d2yzqa2           2 RVKTIMT----QNPVTITLPATRNYALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNP------------DEEQLAM   64 (122)
T ss_dssp             BHHHHSE----ESCCCEESSCC------------CCEEEEECTT-CCEEEEEESSCC----------------------C
T ss_pred             CcccccC----CCCEEECCcCcHHHHHHHHHHcCCcEEEEEecc-ccchhhhhcchhhhhh------------cccchhh
Confidence            5889998    569999999999999999999999999999987 8999999999987532            3346777


Q ss_pred             cccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          284 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       284 l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                          +|.. +++++++++++.++++.|.+++++++||+|+ +|+++|+||.+|+++.+.
T Consensus        65 ----~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~~~liGiit~~dil~~~~  117 (122)
T d2yzqa2          65 ----LVKR-DVPVVKENDTLKKAAKLMLEYDYRRVVVVDS-KGKPVGILTVGDIIRRYF  117 (122)
T ss_dssp             ----CCBS-CCCEEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHTT
T ss_pred             ----cccc-ceeecchhhHHHHHHHHHHHcCcEEEEEEeC-CCEEEEEEEHHHHHHHHH
Confidence                6776 8899999999999999999999999999998 899999999999998754

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.68  E-value=1.6e-16  Score=134.41  Aligned_cols=138  Identities=12%  Similarity=0.095  Sum_probs=107.0

Q ss_pred             CCCCCCCCCeEEEeCCCCHHHHHHHHHHCCCccCceecCCCCCCCCcccceeEEEehhHHHHHHHhhhhHHhhhcccccc
Q 013373           48 SFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTA  127 (444)
Q Consensus        48 ~~~~~~~~~~i~v~~~~si~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~~Giv~~~di~~~~l~~~~~~~~~~~~~~~  127 (444)
                      ++...++.+++++.+++|+.+|++.|.++++.++||+|++        ++++|+|+..||+.+.........        
T Consensus         5 ~v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~--------~~~vGiis~~Dl~~~~~~~~~~~~--------   68 (145)
T d1o50a3           5 DVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD--------NKLVGMIPVMHLLKVSGFHFFGFI--------   68 (145)
T ss_dssp             HHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET--------TEEEEEEEHHHHHHHHHHHHHCCC--------
T ss_pred             EhHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEeccC--------cceeeeeccchhhhhhhccccccc--------
Confidence            3344457788999999999999999999999999999976        499999999999988654331000        


Q ss_pred             cccccccccccccchhcccCCCcchhhhhhHHhhhhhhccchhhhccCCCCCccccccccchhHHhhhccCCCCCCcHHH
Q 013373          128 TAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRS  207 (444)
Q Consensus       128 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d  207 (444)
                                        .                                        ....+  ..........++.+
T Consensus        69 ------------------~----------------------------------------~~~~~--~~~~~~~~~~~~~~   88 (145)
T d1o50a3          69 ------------------P----------------------------------------KEELI--RSSMKRLIAKNASE   88 (145)
T ss_dssp             ------------------C-------------------------------------------------CCCCCSSCBHHH
T ss_pred             ------------------c----------------------------------------hhHHH--HhhhhhccccCHHH
Confidence                              0                                        00000  00112234556777


Q ss_pred             hhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcC
Q 013373          208 IIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC  267 (444)
Q Consensus       208 i~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~  267 (444)
                      ++.     +++++.+++++.+|+.+|.+++++++||+|++ |+++|+||.+||++++.++
T Consensus        89 ~~~-----~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~-g~i~Gvit~~dil~~l~~~  142 (145)
T d1o50a3          89 IML-----DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEK-GEIVGDLNSLEILLALWKG  142 (145)
T ss_dssp             HCB-----CCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHS
T ss_pred             HcC-----CCEEEcCCCCHHHHHHHHHHcCceEEEEEeCC-CeEEEEEEHHHHHHHHHhc
Confidence            765     36789999999999999999999999999976 8999999999999999865

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.68  E-value=2.7e-16  Score=129.84  Aligned_cols=113  Identities=20%  Similarity=0.341  Sum_probs=96.0

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCC-CCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCc
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG-TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  294 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~-~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~  294 (444)
                      +++++.+++++.+|+++|.+++++++||+|+. +++++|++|..|+.+....           ..+....   +|.. ++
T Consensus         6 dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~-----------~~~~~~~---~~~~-~~   70 (126)
T d1zfja4           6 DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDY-----------NAPISEH---MTSE-HL   70 (126)
T ss_dssp             SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCS-----------SSBTTTS---CCCS-CC
T ss_pred             CceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhcc-----------CCceeee---eecc-ce
Confidence            46799999999999999999999999999962 3789999999999765432           2233341   4454 78


Q ss_pred             eEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCC
Q 013373          295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (444)
Q Consensus       295 ~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~  344 (444)
                      +++.+++++.+|+++|.+++++++||+|+ +|+++|+||.+|++++...+
T Consensus        71 ~~~~~~~~l~~a~~~m~~~~~~~lpVVd~-~g~lvGiiT~~Dil~~~~~p  119 (126)
T d1zfja4          71 VTAAVGTDLETAERILHEHRIEKLPLVDN-SGRLSGLITIKDIEKVIEFP  119 (126)
T ss_dssp             CCEETTCCHHHHHHHHHHTTCSEEEEECT-TSBEEEEEEHHHHHHHHHCT
T ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEEcC-CCeEEEEEEHHHHHHHhhCc
Confidence            99999999999999999999999999998 89999999999999987643

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=9.1e-17  Score=138.18  Aligned_cols=134  Identities=13%  Similarity=0.151  Sum_probs=108.1

Q ss_pred             CCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCC-----Cccccc
Q 013373          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR-----DWFDII  276 (444)
Q Consensus       202 ~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~-----~~~~~~  276 (444)
                      ..++.|+|...  .+++.++.++++.+|+++|.+++++++||+|++.++++|++|..|++..+......     ......
T Consensus        12 ~~t~~Dlm~~~--~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~~   89 (159)
T d2v8qe2          12 SHRCYDLIPTS--SKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEH   89 (159)
T ss_dssp             HSBGGGGSCSE--EEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGC
T ss_pred             CCEEEeECCCC--CceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhhh
Confidence            55799999643  66899999999999999999999999999987668999999999999887543110     000000


Q ss_pred             ----ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          277 ----ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       277 ----~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                          ......+    +|.. +++++++++++.+++++|.+++++++||+|+++|+++|+||.+||++++.
T Consensus        90 ~~~~~~~~~~~----~~~~-~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~  154 (159)
T d2v8qe2          90 KIETWREVYLQ----DSFK-PLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLK  154 (159)
T ss_dssp             BHHHHHHHHSS----SSCC-CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHH
T ss_pred             hcccccceeee----eecc-ceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHH
Confidence                0112233    5665 89999999999999999999999999999864789999999999999875

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.67  E-value=1.5e-16  Score=131.71  Aligned_cols=116  Identities=16%  Similarity=0.333  Sum_probs=103.9

Q ss_pred             cHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhC-----CCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCccccccc
Q 013373          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY-----RLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS  278 (444)
Q Consensus       204 ~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~-----~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~  278 (444)
                      |++.+|.    .+++++.+++|+.+|++.|.++     +++.+||+|++ +++.|+++..+++..   .         ..
T Consensus         2 taG~iM~----~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~~~~l~~~---~---------~~   64 (127)
T d2ouxa2           2 TAGAIMT----TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRDLIVN---D---------DD   64 (127)
T ss_dssp             BHHHHCB----SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHHHTTS---C---------TT
T ss_pred             ChhHhCC----CCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecC-CeEEEEEEeeccccc---c---------cc
Confidence            5788998    6799999999999999999876     47899999988 899999999998642   1         35


Q ss_pred             CcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       279 ~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      .++.+    +|++ +++++.+++++.+|+++|.+++++++||+|+ +|+++|+||.+|++.++.
T Consensus        65 ~~v~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~-~g~lvGiIt~~Dil~~i~  122 (127)
T d2ouxa2          65 TLIAD----ILNE-RVISVHVGDDQEDVAQTIRDYDFLAVPVTDY-DDHLLGIVTVDDIIDVID  122 (127)
T ss_dssp             SBHHH----HSBS-CCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred             EEhhh----hccC-CCccCCCCCCHHHHHHHHHHhCCEEEEEEeC-CCEEEEEEEHHHHHHHHH
Confidence            68999    7986 8999999999999999999999999999998 899999999999998864

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=2.3e-16  Score=132.72  Aligned_cols=132  Identities=16%  Similarity=0.192  Sum_probs=99.6

Q ss_pred             CcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccc-cCcc
Q 013373          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIA-SQPI  281 (444)
Q Consensus       203 ~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~-~~~v  281 (444)
                      .++.++- ...+++++++.+++++.+|++.|.+++++++||+|.+ ++++|++|..|+++++............. ....
T Consensus         6 ~~i~~l~-~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~-~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~~~   83 (140)
T d2nyca1           6 IPIGDLN-IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMR   83 (140)
T ss_dssp             SBGGGSS-CCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC----CCSBHHHHHHH
T ss_pred             CcHHHhC-CccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-CeEcceehhhHHHHHHhhccccccccchhhhhhh
Confidence            3455542 1234789999999999999999999999999999987 89999999999999987653221111000 0011


Q ss_pred             cccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       282 ~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      ..    .+.. +++++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|+++++.
T Consensus        84 ~~----~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~-~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          84 RS----DDFE-GVYTCTKNDKLSTIMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             CC-----------CEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             hh----hccc-ccEEECCCCcHHHHHHHHHhcCeeEEEEEeC-CCeEEEEEEHHHHHHHHh
Confidence            12    2333 6889999999999999999999999999998 899999999999998863

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.66  E-value=2.8e-16  Score=128.80  Aligned_cols=116  Identities=14%  Similarity=0.224  Sum_probs=104.0

Q ss_pred             cHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccc
Q 013373          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  283 (444)
Q Consensus       204 ~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~  283 (444)
                      +|+++|.    +++.++.+++|+.+|++.|.+++.+++||+|++ ++++|+++..|+++..            ...++.+
T Consensus         2 ~v~~~m~----~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~-~~~~Gii~~~dl~~~~------------~~~~v~~   64 (121)
T d1vr9a3           2 KVKKWVT----QDFPMVEESATVRECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDLD------------LDSSVFN   64 (121)
T ss_dssp             BGGGGCB----SCSCEEETTCBHHHHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTSC------------TTSBSGG
T ss_pred             Cchhhhc----CCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCC-ceeEEEeehhhhhhhh------------ccccccc
Confidence            4677787    679999999999999999999999999999977 8999999999997531            3457888


Q ss_pred             cccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          284 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       284 l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                          +|.. ++.++++++++.+++++|.+++...+||+|+ +|+++|+||..|+++++.
T Consensus        65 ----~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde-~g~~~Gvit~~dil~~l~  117 (121)
T d1vr9a3          65 ----KVSL-PDFFVHEEDNITHALLLFLEHQEPYLPVVDE-EMRLKGAVSLHDFLEALI  117 (121)
T ss_dssp             ----GCBC-TTCCEETTSBHHHHHHHHHHCCCSEEEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred             ----cccC-ccEEECCCCCHHHHHHHHHhcCceeeeeECC-CCeEEEEEEHHHHHHHHH
Confidence                6775 8899999999999999999999999999998 899999999999999875

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.66  E-value=1.5e-16  Score=132.98  Aligned_cols=126  Identities=19%  Similarity=0.277  Sum_probs=107.7

Q ss_pred             cHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCC----cccccccC
Q 013373          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD----WFDIIASQ  279 (444)
Q Consensus       204 ~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~----~~~~~~~~  279 (444)
                      +|+++|.    ++++++.+++++.+|++.|.+++++++||+|+   +++|+++..|+++++.......    ....+...
T Consensus         2 ~V~~lM~----~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~---~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (135)
T d3ddja2           2 NIETLMI----KNPPILSKEDRLGSAFKKINEGGIGRIIVANE---KIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTT   74 (135)
T ss_dssp             SGGGTCE----ESCCEECTTSBHHHHHHHTTGGGCCEEEEESS---SEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTS
T ss_pred             EeeEEee----CCCeEECCCCcHHHHHHHHHHhCCeEEEEEec---ceeceeeccchhhhhccccccchhhhhccccccC
Confidence            5788887    56889999999999999999999999999974   6999999999998876542211    11123467


Q ss_pred             cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      ++++    +|+. ++.++.+++++.+|+++|.+++++++||+|+ +|+++|+||.+|+++++.
T Consensus        75 ~v~~----im~~-~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~-~g~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          75 PIID----YMTP-NPVTVYNTSDEFTAINIMVTRNFGSLPVVDI-NDKPVGIVTEREFLLLYK  131 (135)
T ss_dssp             BGGG----TSEE-SCCCEETTSCHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHGGGGG
T ss_pred             CHHH----HhCC-ccceEEeccccchhhhhhhhcceeEEEEEeC-CCEEEEEEEHHHHHHHHH
Confidence            8898    7886 8999999999999999999999999999998 899999999999998865

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=5.7e-16  Score=131.05  Aligned_cols=134  Identities=14%  Similarity=0.174  Sum_probs=106.7

Q ss_pred             CCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccc-cccC
Q 013373          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDI-IASQ  279 (444)
Q Consensus       201 ~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~-~~~~  279 (444)
                      ...+++++... .+++++++.+++++.+|+++|.+++++++||+|++ ++++|++|..|+++.+........... ....
T Consensus         7 ~~~~l~~l~i~-~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~-~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~~   84 (145)
T d2v8qe1           7 MSKSLEELQIG-TYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK-GRVVDIYSKFDVINLAAEKTYNNLDVSVTKAL   84 (145)
T ss_dssp             GGSBHHHHTCS-BCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTT-SBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHG
T ss_pred             hhCCHHHHcCC-CCCCceEEcCcCcHHHHHHHHHHcCCCcccccccC-CceEEEEEcchhhhhhhcccccchhhhhhhcc
Confidence            34567777641 23679999999999999999999999999999987 899999999999988865422110000 0111


Q ss_pred             cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      ....    .|.. +++++.+++++.+++++|.+++++++||+|+ +|+++|+||.+||++++.
T Consensus        85 ~~~~----~~~~-~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~l~GiVt~~dii~~lv  141 (145)
T d2v8qe1          85 QHRS----HYFE-GVLKCYLHETLEAIINRLVEAEVHRLVVVDE-HDVVKGIVSLSDILQALV  141 (145)
T ss_dssp             GGCC----SCCC-SCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             chhh----hccC-CCeEECCCCcHHHHHHHHHHcCceEEEEEcc-CCEEEEEEEHHHHHHHHH
Confidence            2223    4554 7889999999999999999999999999998 899999999999999875

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.65  E-value=4.3e-16  Score=129.44  Aligned_cols=121  Identities=17%  Similarity=0.251  Sum_probs=102.1

Q ss_pred             cHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCC-CCcEEEEEeHHHHHHHhhcCCCCCcccccccCccc
Q 013373          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG-TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (444)
Q Consensus       204 ~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~-~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~  282 (444)
                      +|+|+|.    ++++++++++++.+|++.|.+++++++||++.+ .++++|+++..|+++.+.....       ....+.
T Consensus         2 ~V~dim~----~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~-------~~~~~~   70 (131)
T d2riha1           2 RTSELLK----RPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLD-------LDGPAM   70 (131)
T ss_dssp             BGGGGCC----SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCC-------TTSBSG
T ss_pred             CHHHhcc----CCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccccc-------cccccc
Confidence            5889998    779999999999999999999999999999432 3789999999999998876532       112222


Q ss_pred             ccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       283 ~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      .     +.. ++.++.+++++.+++++|.+++++++||+|+ +|+++|+||..||++.+.
T Consensus        71 ~-----~~~-~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~-~g~l~Giit~~Dll~~~~  123 (131)
T d2riha1          71 P-----IAN-SPITVLDTDPVHVAAEKMRRHNIRHVVVVNK-NGELVGVLSIRDLCFERA  123 (131)
T ss_dssp             G-----GCB-CCCEEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHSCHH
T ss_pred             c-----ccc-cceeEeeecchHHHHHHHHHCCeEEEEEEcC-CCeEEEEEEHHHHHHHHH
Confidence            2     344 6789999999999999999999999999998 899999999999987643

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.64  E-value=1.4e-16  Score=134.77  Aligned_cols=116  Identities=16%  Similarity=0.319  Sum_probs=103.5

Q ss_pred             cHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCC-----CCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCccccccc
Q 013373          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYR-----LRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS  278 (444)
Q Consensus       204 ~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~-----i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~  278 (444)
                      +++.+|+    .+++++.+++|+.+|++.|.+++     ++.+||+|++ ++++|+++.+|+....            ..
T Consensus         2 taG~iM~----~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~~~dl~~~~------------~~   64 (144)
T d2yvxa2           2 EAGGLMT----PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVAD------------PR   64 (144)
T ss_dssp             SSGGGCB----SCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTT-CBBCCBCBHHHHTTSC------------TT
T ss_pred             CcccccC----CCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCC-CCEecccchhhhhhcc------------cc
Confidence            5778888    67999999999999999998774     7889999987 8999999999986521            34


Q ss_pred             CcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373          279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (444)
Q Consensus       279 ~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~  342 (444)
                      .++.+    +|++ +++++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+|+++++.
T Consensus        65 ~~v~~----im~~-~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~-~g~lvGiIt~~Dil~~l~  122 (144)
T d2yvxa2          65 TRVAE----IMNP-KVVYVRTDTDQEEVARLMADYDFTVLPVVDE-EGRLVGIVTVDDVLDVLE  122 (144)
T ss_dssp             CBSTT----TSBS-SCCCEESSCCHHHHHHHHHHSCCSEEEEECS-SCBEEEEEEHHHHHHHHH
T ss_pred             cchHH----hccc-CCccCCCCChHHHHHHHHHHcCCCEEEEEeE-CCEEEEEEEHHHHHHHHH
Confidence            67888    7886 8999999999999999999999999999998 899999999999998875

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.64  E-value=7.4e-18  Score=138.23  Aligned_cols=112  Identities=18%  Similarity=0.298  Sum_probs=59.6

Q ss_pred             CceEecCCCcHHHHHHHHHHcCCCeEeEEeC--CCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCC
Q 013373          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEG--QQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSG  370 (444)
Q Consensus       293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~--~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~  370 (444)
                      +++++++++++.+|+++|.+++++++||+|+  .+++++|++|.+|+......  .    ...++.+++..         
T Consensus         5 ~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~--~----~~~~~~~~~~~---------   69 (120)
T d1jr1a4           5 DPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEE--E----HDRFLEEIMTK---------   69 (120)
T ss_dssp             TTCC----CCCC--CCBC---------------CTTCCC----------------------------CCSB---------
T ss_pred             CCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhcc--c----cCceeEEEEee---------
Confidence            5679999999999999999999999999984  25789999999998654321  1    13355555542         


Q ss_pred             CCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373          371 KVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  421 (444)
Q Consensus       371 ~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~  421 (444)
                       ..+++++++++++.+|+++|.+++++++||||++| +++|+||++||++.
T Consensus        70 -~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~-~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          70 -REDLVVAPAGITLKEANEILQRSKKGKLPIVNEND-ELVAIIARTDLKKN  118 (120)
T ss_dssp             -TTTSCCEETTCCHHHHHHHTCSCC---CEEEETTT-EEEEEECHHHHHHH
T ss_pred             -ccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCC-EEEEEEEHHHhhhc
Confidence             13689999999999999999999999999999998 99999999999985

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.62  E-value=1.2e-15  Score=130.89  Aligned_cols=129  Identities=14%  Similarity=0.169  Sum_probs=105.3

Q ss_pred             CCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCC-CCcEEEEEeHHHHHHHhhcCCCC---Cccc---
Q 013373          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG-TPDIKNYITQSAVVQGLEGCKGR---DWFD---  274 (444)
Q Consensus       202 ~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~-~~~l~Givt~~di~~~l~~~~~~---~~~~---  274 (444)
                      ..+|+|+|.    ++++++++++++.+|+++|.+++++++||+|+. ++.++|+++..|+++.+......   ....   
T Consensus        10 ~~~V~diM~----~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~   85 (160)
T d2d4za3          10 NIQVGDIMV----RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEML   85 (160)
T ss_dssp             SCBTTSSSB----SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCC
T ss_pred             ceEHHHhcC----CCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhcc
Confidence            568999998    789999999999999999999999999999853 36899999999999887542110   0000   


Q ss_pred             -------------ccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHh
Q 013373          275 -------------IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  341 (444)
Q Consensus       275 -------------~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l  341 (444)
                                   ......+.+    +|.. +++++.+++++.+++++|.+++++++||++  +|+++|+||++||++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d--~g~lvGiIt~~Di~k~I  158 (160)
T d2d4za3          86 TLEEIYRWEQREKNVVVNFETC----RIDQ-SPFQLVEGTSLQKTHTLFSLLGLDRAYVTS--MGKLVGVVALAEIQAAI  158 (160)
T ss_dssp             BHHHHHHHHHHHTTCBCCTTSS----CEEC-CSCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHH
T ss_pred             ccchhhhhhhhhcccccceeee----cccC-CCEEEcCCCCHHHHHHHHHHcCCeEEEEEE--CCEEEEEEEHHHHHHHh
Confidence                         011222333    5665 789999999999999999999999999998  68999999999999875

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4.1e-15  Score=129.08  Aligned_cols=116  Identities=18%  Similarity=0.283  Sum_probs=94.6

Q ss_pred             eEecCCCcHHHHHHHHHHcCCCeEeEEeC-CCCeEEEEEeHHHHHHHhcCCccc---------------------ccccc
Q 013373          295 ITIQSNELILEAFKRMKDNNIGGIPVVEG-QQKKIVGNVSIRDIRHLLLKPELF---------------------SNFRQ  352 (444)
Q Consensus       295 ~~v~~~~sl~ea~~~m~~~~~~~lpVvd~-~~~~lvGiIt~~Dll~~l~~~~~~---------------------~~~~~  352 (444)
                      +.+.++.|+.++.++|.+++++++||+++ ++++++|++|.+|++.++......                     .....
T Consensus        20 v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (169)
T d2j9la1          20 VLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPT   99 (169)
T ss_dssp             CEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCCCTTCCCC
T ss_pred             EECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccchhhhhcccchhhhhccccc
Confidence            44567889999999999999999999943 268899999999999887421000                     01123


Q ss_pred             CcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373          353 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  424 (444)
Q Consensus       353 ~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~  424 (444)
                      .++.++|.+            +++++.+++++.+++++|.+++.+++||+|+ | +++|+||++||++++..
T Consensus       100 ~~v~~im~~------------~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d~-g-~lvGiIt~~Dil~~l~~  157 (169)
T d2j9la1         100 LKLRNILDL------------SPFTVTDLTPMEIVVDIFRKLGLRQCLVTHN-G-RLLGIITKKDVLKHIAQ  157 (169)
T ss_dssp             EECGGGEES------------SCCEEETTSBHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHHHHHHH
T ss_pred             cchhhhccC------------CCEEECCCCcHHHHHHHHHhcCceEEEEEEC-C-EEEEEEEHHHHHHHHHH
Confidence            446777774            7899999999999999999999999998874 5 99999999999999974

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=9.7e-15  Score=126.67  Aligned_cols=133  Identities=10%  Similarity=0.188  Sum_probs=104.2

Q ss_pred             CcHHHhhhhcCCCCce--EeeCCCCHHHHHHHHHhCCCCEEEEecC-CCCcEEEEEeHHHHHHHhhcCCCCC--------
Q 013373          203 TTVRSIIKSYRWAPFL--PVATDDSMLSVLLLLSKYRLRNVPIIEP-GTPDIKNYITQSAVVQGLEGCKGRD--------  271 (444)
Q Consensus       203 ~~v~di~~~~~~~~~v--~v~~~~sl~~a~~~l~~~~i~~lpVvd~-~~~~l~Givt~~di~~~l~~~~~~~--------  271 (444)
                      +.++|+|......+++  .+.++.|+.+|+++|.+++++++||+++ ++++++|++|.+|++.++.......        
T Consensus         3 ~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~   82 (169)
T d2j9la1           3 TLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSI   82 (169)
T ss_dssp             CBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCE
T ss_pred             cchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccchh
Confidence            4578999865445444  3457789999999999999999999953 3478999999999998875311000        


Q ss_pred             ----------cccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHh
Q 013373          272 ----------WFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  341 (444)
Q Consensus       272 ----------~~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l  341 (444)
                                ........++++    +|.+ +++++.+++++.+++++|.+++.+++||++  +|+++|+||++|+++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~----im~~-~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d--~g~lvGiIt~~Dil~~l  155 (169)
T d2j9la1          83 IYFTEHSPPLPPYTPPTLKLRN----ILDL-SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH--NGRLLGIITKKDVLKHI  155 (169)
T ss_dssp             EECSSSCCCCCTTCCCCEECGG----GEES-SCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHH
T ss_pred             hhhcccchhhhhccccccchhh----hccC-CCEEECCCCcHHHHHHHHHhcCceEEEEEE--CCEEEEEEEHHHHHHHH
Confidence                      000112345666    6876 789999999999999999999999999988  68999999999999987


Q ss_pred             c
Q 013373          342 L  342 (444)
Q Consensus       342 ~  342 (444)
                      .
T Consensus       156 ~  156 (169)
T d2j9la1         156 A  156 (169)
T ss_dssp             H
T ss_pred             H
Confidence            6

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.57  E-value=1.4e-16  Score=130.39  Aligned_cols=112  Identities=13%  Similarity=0.210  Sum_probs=57.8

Q ss_pred             CceEeeCCCCHHHHHHHHHhCCCCEEEEecCC--CCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCC
Q 013373          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDE  293 (444)
Q Consensus       216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~--~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~  293 (444)
                      +++++.+++++.+|+++|.+++++++||+|++  .++++|++|.+|+.......         ...++....  .+.. +
T Consensus         5 ~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~---------~~~~~~~~~--~~~~-~   72 (120)
T d1jr1a4           5 DPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEE---------HDRFLEEIM--TKRE-D   72 (120)
T ss_dssp             TTCC----CCCC--CCBC---------------CTTCCC-------------------------------CC--SBTT-T
T ss_pred             CCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhccc---------cCceeEEEE--eecc-C
Confidence            45789999999999999999999999999852  37899999999985433222         233455521  2333 6


Q ss_pred             ceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHH
Q 013373          294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL  340 (444)
Q Consensus       294 ~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~  340 (444)
                      ++++.+++++.+|+++|.+++++++||+|+ +|+++|+||.+|+++.
T Consensus        73 ~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~-~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          73 LVVAPAGITLKEANEILQRSKKGKLPIVNE-NDELVAIIARTDLKKN  118 (120)
T ss_dssp             SCCEETTCCHHHHHHHTCSCC---CEEEET-TTEEEEEECHHHHHHH
T ss_pred             ceEECCCCCHHHHHHHHHHcCccEEEEEcC-CCEEEEEEEHHHhhhc
Confidence            899999999999999999999999999998 8999999999999875