Citrus Sinensis ID: 013405

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440---
Protein Sequence
MEVFLEFVLPIAFSLIFSFFLAKLFSLSSSPSTNCDCDLVSGLKPCKHFIQKVVTCEQRGSETEKTHGFVAKVVEGGSETQEKILLDDCCGSCDDVKIGDNEVLKEAEMERVVEEHFGEFGGGESESNAKFGTGLTKDEVSVARSEEIEFLESKCEARKIQKDDGGKCSTFDCKEMLMDKNNFFESEKMAKIEAESTKTVTRMTESEETEVSKSNCDNEVDEANKNQEDGGESSIFNCKQILVYRSNFFESENIAAVKSESAITEVGMARSEEIEVLESNCDNEIGERNRDEEDDVKVVSFDEDDDWEGIERTELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVTILSRSIPGCIQDGIGGDIKPVSADAEACGELVCDLKAYQVAQLGAVDKR
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEccccccEEEccEEEEEEEcccEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHccEEEcccccccccHHHHHHHHccccHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHccccccccccccccccEEccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEEEccccEEEEEcEEEEEEEccccccEEEEEEccccccccccEccHcHcccHccHHHHHHccccEccccccccHHHHHHcccHHHcccHHHHHHHHHHHccccEEEEEcccccccEcccHHHHHccccccHHHHHHHHHHccccccccccccEHHHHcccccHHHHHHHccccccccccccEcccEEEEEEcHccccccEEEEEEccccccccccccccEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHcccccccccccccccccccccccccccccHHHHcHHccc
Coil and Loop (DISEMBL)
MEVFLEFVLPIAFSLIFSFFLAKLfslssspstncdcdlvsglkpckHFIQKVVTceqrgsetektHGFVAKVVeggsetqekillddccgscddvkigdnEVLKEAEMERVVEEhfgefgggesesnakfgtgltkdEVSVARSEEIEFLESKCEARKiqkddggkcstfdckemlmdknnffesEKMAKIEAESTKTVTRMTeseetevsksncdnevdeanknqedggessifncKQILVYRsnffeseniaavksesaITEVGMARSEEIEVLESncdneigernrdeeddvkvvsfdedddwegiERTELERLFGAAVAFVGnkcnagrissigsdvKMQLYGLHkiatvgpcrepqpmaLKVSARANWNAWKqlgnmtpeIAMEQYVTILSRsipgciqdgiggdikpvsadaEACGELVCDLKAYQVAQLGAVDKR
Flexible Loop (DISEMBL)
MEVFLEFVLPIAFSLIFSFFLAKLFSLSSSPSTNCDCDLVSGLKPCKHFIQKVVTceqrgsetekthGFVAKVVEGGSETQEKILLDDCCGSCDDVKIGDNEVLKEAEMERVVEEHfgefgggesesnakfgtglTKDEVSVARSEEIEFLeskcearkiqkddggkcsTFDCKEMLMDKNNFFESEKMAKIeaestktvtrmteseetevsksncdnevdeanknqedggessiFNCKQILVYRSNFFESENIAAVKSESAITEVGMARSEEIEVLesncdneigernrdeeddvkvvsfdedddwegIERTELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVTILSRSIPGCIQDGIGGDIKPVSADAEACGELVCDLKAYQVAqlgavdkr
Low Complexity Region (SEG)
MEVFLEFVlpiafslifsfflaklfslssspsTNCDCDLVSGLKPCKHFIQKVVTCEQRGSETEKTHGFVAKVVEGGSETQEKILLDDCCGSCDDVKIGDNEVLKEAEMERVVeehfgefgggesesNAKFGTGLTKDEVSVARSEEIEFLESKCEARKIQKDDGGKCSTFDCKEMLMDKNNFFESEKMAKIEAESTKTVTRMTESEETEVSKSNCDNEVDEANKNQEDGGESSIFNCKQILVYRSNFFESENIAAVKSESAITEVGMARSEEIEVLESNCDNEIGERNRDEEDDVKVVSFDEDDDWEGIERTELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVTILSRSIPGCIQDGIGGDIKPVSADAEACGELVCDLKAYQVAQLGAVDKR
Disordered region (IsUnstruct)
**VFLEFVLPIAFSLIFSFFLAKLFSLSSSPSTNCDCDLVSGLKPCKHFIQKVVTCEQRG***EKTHGFVAKVVEGGSETQEKILLDDCCGSCDDVKIGDNEVLKEA****VV********************************************************TFDCK************************************************************IFNCKQILVYRSNFFESENIAAVK***************************************VVSFDEDDDWEGIERTELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVTILSRSIPGCIQDGIGGDIKPVSADAEACGELVCDLKAYQVAQLG*****
Disordered Region (DISOPRED)
*EVFLEFVLPIAFSLIFSFFLAKLFSLSSSPSTNCDCDLVSGLKPCKHFIQKVVTCE*************AKVVEGGSETQEKILLDDCCGSCDDVKIGDNEVLKEAEMERVVEEHFGEFGGGESESNAKFGTGLTKDEVSVA***************************FDCKEMLMD**********************RMTESE*********************************ILV*********************************************************************TELERLFGAAVAFV***************VKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVTILSRSI******************************AY***********
Disordered Region (DISEMBL)
MEVFLEFVLPIAFSLIFSFFLAKLFSLSSSPSTNCDCDLVSGLKPCKHFIQKVVTCEQRGSETEKTHGFVAKVVEGGSETQEKILLDDCCGSCDDVKIGDNEVLKEAEMERVVEEHFGEFGGGESESNAKFGTGLTKDEVSVARSEEIEFLESKCEARKIQKDDGGKCSTFDCKEMLMDKNNFFESEKMAKIEA*********************CDNEVDEANKNQEDGGESSIFNCKQILVYRSNFFESENIAAVKSESAITEVGMARSEEIEVLESNCDNEIGERNRDEEDDVKVVSFDEDDDWEGIERTELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVTILSRSIPGCIQDGIGGDIKPVSADAEACGELVCDLKAYQVAQLGAVDKR
Disordered Region (DISPRO)
MEVFLEFVLPIAFSLIFSFFLAKLFSLSSSPSTNCDCDLVSGLKPCKHFIQKVVTCEQRGSETEKTHGFVAKVVEGGSETQEKILLDDCCGSCDDVKIGDNEVLKEAEMERVVEEHFGEFGGGESESNAKFGTGLTKDEVSVARSEEIEFLESKCEARKIQKDDGGKCSTFDCKEMLMDKN*FFESEK*****************SEETE*SKSNCDNEVDEANK******ESSIFNCKQILVYRSNFFESENIAAVKSES********************************************DWEGIERTELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVTILSRSIPGCIQ**************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVFLEFVLPIAFSLIFSFFLAKLFSLSSSPSTNCDCDLVSGLKPCKHFIQKVVTCEQRGSETEKTHGFVAKVVEGGSETQEKILLDDCCGSCDDVKIGDNEVLKEAEMERVVEEHFGEFGGGESESNAKFGTGLTKDEVSVARSEEIEFLESKCEARKIQKDDGGKCSTFDCKEMLMDKNNFFESEKMAKIEAESTKTVTRMTESEETEVSKSNCDNEVDEANKNQEDGGESSIFNCKQILVYRSNFFESENIAAVKSESAITEVGMARSEEIEVLESNCDNEIGERNRDEEDDVKVVSFDEDDDWEGIERTELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVTILSRSIPGCIQDGIGGDIKPVSADAEACGELVCDLKAYQVAQLGAVDKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	443	2.2.26 [Sep-21-2011]
Q9STX1	362	Acyl-CoA-binding domain-c	yes	no	0.329	0.403	0.486	8e-34
Q9STP8	354	Acyl-CoA-binding domain-c	no	no	0.302	0.378	0.459	3e-23
Q9SM23	338	Acyl-CoA-binding domain-c	no	no	0.223	0.292	0.464	1e-17
Q8RWD9	648	Acyl-CoA-binding domain-c	no	no	0.198	0.135	0.362	7e-09
Q9MA55	668	Acyl-CoA-binding domain-c	no	no	0.198	0.131	0.373	1e-08
Q9WUR2	391	Enoyl-CoA delta isomerase	yes	no	0.130	0.148	0.431	3e-08
O75521	394	Enoyl-CoA delta isomerase	yes	no	0.124	0.139	0.436	8e-08
Q5XIC0	391	Enoyl-CoA delta isomerase	yes	no	0.130	0.148	0.413	1e-07
Q54GC8	288	Acyl-CoA-binding domain-c	yes	no	0.196	0.302	0.292	1e-07
Q502L1	501	Acyl-CoA-binding domain-c	no	no	0.198	0.175	0.359	6e-07

>sp|Q9STX1|ACBP3_ARATH Acyl-CoA-binding domain-containing protein 3 OS=Arabidopsis thaliana GN=ACBP3 PE=1 SV=1

 Score =  145 bits (365), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 74/152 (48%), Positives = 109/152 (71%), Gaps = 6/152 (3%)

Query: 257 VKSESAITEVGMARSEEIEVLESNCDNEIGERNRDEEDDVKV-VSFDEDDDWEGIERTEL 315
           V++E +  +V +A SEE+ V +S+  N + E + + E++ K  ++ +EDDDWEGIER+EL
Sbjct: 174 VENEESGGDVLVAESEEVRVEKSS--NMVEESDAEAENEEKTELTIEEDDDWEGIERSEL 231

Query: 316 ERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWN 375
           E+ F AAV  +     +G+   IG++ KM+L+GLHKIAT G CRE QPMA+ +SARA WN
Sbjct: 232 EKAFAAAVNLLEE---SGKAEEIGAEAKMELFGLHKIATEGSCREAQPMAVMISARAKWN 288

Query: 376 AWKQLGNMTPEIAMEQYVTILSRSIPGCIQDG 407
           AW++LGNM+ E AMEQY+ ++S+ IPG  + G
Sbjct: 289 AWQKLGNMSQEEAMEQYLALVSKEIPGLTKAG 320

Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with arachidonyl-CoA, barely with oleoyl-CoA, but not with palmitoyl-CoA.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9STP8|ACBP2_ARATH Acyl-CoA-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=ACBP2 PE=1 SV=1

 Score =  109 bits (273), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/148 (45%), Positives = 91/148 (61%), Gaps = 14/148 (9%)

Query: 277 LESNC-------DNEIGERNRDEEDDVKVVSFDEDDDWEGIERTELERLFGAAVAFVGNK 329
           L+S+C       D+ + E+     D V     +EDDDWEG+E TEL+  F AA  FV   
Sbjct: 59  LDSSCGGFGGEADSLVAEQGSSRSDSVAGDDSEEDDDWEGVESTELDEAFSAATLFV-TT 117

Query: 330 CNAGRISS-IGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIA 388
             A R+S  + SDV+ QLYGL+KIAT GPC  PQP ALK++ARA W AW++LG M PE A
Sbjct: 118 AAADRLSQKVPSDVQQQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWQKLGAMPPEEA 177

Query: 389 MEQYVTILSRSIPGCIQDGI-----GGD 411
           ME+Y+ I+++  P  +  G+     GGD
Sbjct: 178 MEKYIEIVTQLYPTWLDGGVKAGSRGGD 205

Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with palmitoyl-CoA, but not with oleoyl-CoA. Binds to lead ions (Pb). May function as an intracellular carrier of acyl-CoA esters. Required for proper phospholipid and, to a lower extent, galactolipid composition.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SM23|ACBP1_ARATH Acyl-CoA-binding domain-containing protein 1 OS=Arabidopsis thaliana GN=ACBP1 PE=1 SV=2

 Score = 91.7 bits (226), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 68/99 (68%)

Query: 309 GIERTELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKV 368
           G+E TEL+  F AA AFV    +      + +++++QLYGL+KIAT GPC  PQP ALK+
Sbjct: 88  GVESTELDEAFSAATAFVAAAASDRLSQKVSNELQLQLYGLYKIATEGPCTAPQPSALKM 147

Query: 369 SARANWNAWKQLGNMTPEIAMEQYVTILSRSIPGCIQDG 407
           +ARA W AW++LG M PE AME+Y+ ++++  P  ++ G
Sbjct: 148 TARAKWQAWQKLGAMPPEEAMEKYIDLVTQLYPAWVEGG 186

Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with arachidonyl-CoA, barely with oleoyl-CoA, but not with palmitoyl-CoA. Confers tolerance and binds to lead ions Pb(2+), probably by promoting lead translocation from roots to shoots. May function as an intracellular carrier of acyl-CoA esters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWD9|ACBP5_ARATH Acyl-CoA-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=ACBP5 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 316 ERLFGAA--VAFVGNKCNAGRISS-IGSDVKMQLYGLHKIATVGPCREPQPMALKVSARA 372
           ER + AA  V   G++ +  ++SS   +D  + LY LH+ AT+GPC  P+P A     ++
Sbjct: 15  ERFYAAASYVGLDGSQSSVKQLSSKFSNDTSLLLYTLHQQATLGPCSIPKPSAWNPVEQS 74

Query: 373 NWNAWKQLGNMTPEIAMEQYVTILSRSIPGC 403
            W +W+ LG M    AM  +V IL  + PG 
Sbjct: 75  KWKSWQGLGTMPSIEAMRLFVKILEEADPGW 105

Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with oleoyl-CoA, barely with palmitoyl-CoA, but not with arachidonyl-CoA. May function as an intracellular carrier of acyl-CoA esters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MA55|ACBP4_ARATH Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 316 ERLFGAA--VAFVGNKCNAGR-ISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARA 372
           ER + AA  V   G+  +A   IS    D  + LY L++ ATVGPC  P+P A +   ++
Sbjct: 14  ERFYAAASYVGLDGSDSSAKNVISKFPDDTALLLYALYQQATVGPCNTPKPSAWRPVEQS 73

Query: 373 NWNAWKQLGNMTPEIAMEQYVTILSRSIPGC 403
            W +W+ LG M    AM  +V IL    PG 
Sbjct: 74  KWKSWQGLGTMPSIEAMRLFVKILEEDDPGW 104

Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with oleoyl-CoA, barely with palmitoyl-CoA, but not with arachidonyl-CoA. May function as an intracellular carrier of acyl-CoA esters. Plays a role in the biosynthesis of membrane lipids including galactolipids and phospholipids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9WUR2|ECI2_MOUSE Enoyl-CoA delta isomerase 2, mitochondrial OS=Mus musculus GN=Eci2 PE=1 SV=2

 Score = 60.1 bits (144), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 38/58 (65%)

Query: 339 GSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVTIL 396
           G++VK++LY L+K AT GPC  P+P  L    +A W+AW  LG++  E A + YV ++
Sbjct: 56  GNEVKLRLYALYKQATEGPCNMPKPGMLDFVNKAKWDAWNALGSLPKETARQNYVDLV 113

Able to isomerize both 3-cis and 3-trans double bonds into the 2-trans form in a range of enoyl-CoA species. Has a preference for 3-trans substrates.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 8

>sp|O75521|ECI2_HUMAN Enoyl-CoA delta isomerase 2, mitochondrial OS=Homo sapiens GN=ECI2 PE=1 SV=4

 Score = 58.9 bits (141), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 36/55 (65%)

Query: 339 GSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYV 393
           G++VK++LY L+K AT GPC  P+P    +  +A W+AW  LG++  E A + YV
Sbjct: 58  GNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYV 112

Able to isomerize both 3-cis and 3-trans double bonds into the 2-trans form in a range of enoyl-CoA species. Has a preference for 3-trans substrates.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 8

>sp|Q5XIC0|ECI2_RAT Enoyl-CoA delta isomerase 2, mitochondrial OS=Rattus norvegicus GN=Eci2 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 37/58 (63%)

Query: 339 GSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVTIL 396
           G++VK++LY L+K AT GPC  P+P       +A W+AW  LG++  E A + YV ++
Sbjct: 56  GNEVKLRLYALYKQATEGPCTMPKPGVFDFVNKAKWDAWNALGSLPKETARQNYVDLV 113

Able to isomerize both 3-cis and 3-trans double bonds into the 2-trans form in a range of enoyl-CoA species. Has a preference for 3-trans substrates.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 8

>sp|Q54GC8|ACBD6_DICDI Acyl-CoA-binding domain-containing protein 6 homolog OS=Dictyostelium discoideum GN=acbd6 PE=3 SV=1

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 2/89 (2%)

Query: 314 ELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARAN 373
           ++E  F  AV ++ N  N+G++S+I ++ ++ LY  +K AT+G C    P       ++ 
Sbjct: 5   QIENKFKLAVDYITN--NSGKLSNIKNEEQLYLYCNYKQATIGDCNTKAPPFYDYIGKSK 62

Query: 374 WNAWKQLGNMTPEIAMEQYVTILSRSIPG 402
           WN+W  L  +   +AM  Y+++++   PG
Sbjct: 63  WNSWNSLKGVEKIVAMNSYISLVNALSPG 91

Binds long-chain acyl-coenzyme A molecules with a strong preference for unsaturated C18:1-CoA. Does not bind fatty acids.

Dictyostelium discoideum (taxid: 44689)

>sp|Q502L1|ACB5A_DANRE Acyl-CoA-binding domain-containing protein 5A OS=Danio rerio GN=acbd5a PE=2 SV=1

 Score = 55.8 bits (133), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 41/89 (46%), Gaps = 1/89 (1%)

Query: 308 EGIERTELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALK 367
           EG      E+ F AAV  + N    G       D+ ++ Y  +K AT GPC  P+P    
Sbjct: 2   EGDSNPLYEQRFNAAVKVIQNLPPNGSFQP-SHDMMLKFYSYYKQATQGPCNIPRPGFWD 60

Query: 368 VSARANWNAWKQLGNMTPEIAMEQYVTIL 396
              +A W+AW  LG M  E AM  YV  L
Sbjct: 61  PVGKAKWDAWSSLGEMPKEEAMAAYVDDL 89

Binds medium- and long-chain acyl-CoA esters.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	443
224063459	362	predicted protein [Populus trichocarpa]	0.306	0.375	0.553	1e-37
224137718	375	predicted protein [Populus trichocarpa]	0.311	0.368	0.538	2e-37
428754008	375	acyl-CoA binding protein 3B [Vernicia fo	0.286	0.338	0.559	1e-36
428754004	273	acyl-CoA binding protein 3A [Vernicia fo	0.261	0.424	0.589	2e-36
356496959	294	PREDICTED: uncharacterized protein LOC10	0.320	0.482	0.556	3e-36
356564133	408	PREDICTED: acyl-CoA-binding domain-conta	0.358	0.389	0.470	6e-35
358249288	295	uncharacterized protein LOC100813431 [Gl	0.320	0.481	0.543	5e-34
301073323	289	acyl-CoA-binding protein [Vitis vinifera	0.255	0.391	0.577	4e-33
225458798	289	PREDICTED: acyl-CoA-binding domain-conta	0.255	0.391	0.577	4e-33
302142221	300	unnamed protein product [Vitis vinifera]	0.255	0.376	0.577	5e-33

>gi|224063459|ref|XP_002301155.1| predicted protein [Populus trichocarpa] gi|222842881|gb|EEE80428.1| predicted protein [Populus trichocarpa]

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 78/141 (55%), Positives = 100/141 (70%), Gaps = 5/141 (3%)

Query: 299 VSFDEDDDWEGIERTELERLFGAAVAFV---GNKCNAGRISSIGSDVKMQLYGLHKIATV 355
           V+ DEDDDWEGIER+ELE +FG A  FV   G+K   GR + +GSDV+M+LYGLHK+AT 
Sbjct: 184 VNDDEDDDWEGIERSELETMFGEAARFVVESGDK--DGRFAGVGSDVQMELYGLHKVATE 241

Query: 356 GPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVTILSRSIPGCIQDGIGGDIKPV 415
           GPC +  PMALKVSARA WNAW++LGNM+PE AMEQY+ ++S   PG ++D  GGD KP 
Sbjct: 242 GPCLQKPPMALKVSARAKWNAWQRLGNMSPEAAMEQYIVLVSDRAPGWMEDKPGGDSKPG 301

Query: 416 SADAEACGELVCDLKAYQVAQ 436
           S++      +  DL  +   Q
Sbjct: 302 SSEVTNPVAVTPDLSTFSSRQ 322

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137718|ref|XP_002327195.1| predicted protein [Populus trichocarpa] gi|222835510|gb|EEE73945.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 77/143 (53%), Positives = 100/143 (69%), Gaps = 5/143 (3%)

Query: 303 EDDDWEGIERTELERLFGAAVAFV---GNKCNAGRISSIGSDVKMQLYGLHKIATVGPCR 359
           +DDDWEGIER+ELE++FG A  FV   GNK    R++S+GSD++M+LYGLHKIAT GPCR
Sbjct: 201 DDDDWEGIERSELEKIFGEAAKFVEESGNKDE--RLASVGSDLQMELYGLHKIATEGPCR 258

Query: 360 EPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVTILSRSIPGCIQDGIGGDIKPVSADA 419
           E  PMALKVSARA WNAW++LGNM+PE AMEQY+ ++    PG +++   GD KP S++ 
Sbjct: 259 EQPPMALKVSARAKWNAWQRLGNMSPEAAMEQYIALVLERAPGWMEEKPSGDNKPGSSEV 318

Query: 420 EACGELVCDLKAYQVAQLGAVDK 442
           E    +  DL      Q    D+
Sbjct: 319 ENLVAVTPDLSTLPSRQPNFTDE 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|428754008|gb|AFZ62129.1| acyl-CoA binding protein 3B [Vernicia fordii] gi|428754010|gb|AFZ62130.1| acyl-CoA binding protein 3B [Vernicia fordii]

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 71/127 (55%), Positives = 94/127 (74%)

Query: 303 EDDDWEGIERTELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQ 362
           ++DDWEGIER+ELE++F  A  FV +      ++S+GSDV+M+LYGLHK+AT GPCRE  
Sbjct: 210 DEDDWEGIERSELEQIFAKAAKFVESGDKDEGLTSVGSDVQMELYGLHKVATEGPCREQP 269

Query: 363 PMALKVSARANWNAWKQLGNMTPEIAMEQYVTILSRSIPGCIQDGIGGDIKPVSADAEAC 422
           PMALKV+ARA WNAW++LGNM PE+AMEQYV ++S  +PG ++D    + KP S +A   
Sbjct: 270 PMALKVAARAKWNAWQRLGNMNPEVAMEQYVALVSDKVPGWMEDKSTDNGKPGSTEAANH 329

Query: 423 GELVCDL 429
           G L  DL
Sbjct: 330 GALPSDL 336

Source: Vernicia fordii

Species: Vernicia fordii

Genus: Vernicia

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|428754004|gb|AFZ62127.1| acyl-CoA binding protein 3A [Vernicia fordii] gi|428754006|gb|AFZ62128.1| acyl-CoA binding protein 3A [Vernicia fordii]

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/117 (58%), Positives = 93/117 (79%), Gaps = 1/117 (0%)

Query: 302 DEDDDWEGIERTELERLFGAAVAFVGNKCNAGRISSIGSD-VKMQLYGLHKIATVGPCRE 360
           DE+DDWEGIER+ELE+ FGAAVA+VG+  NA ++SS  S+ +K+QLYGLH++A  GPC  
Sbjct: 157 DEEDDWEGIERSELEKRFGAAVAYVGSIDNANKLSSTLSNGLKLQLYGLHQVAIEGPCHL 216

Query: 361 PQPMALKVSARANWNAWKQLGNMTPEIAMEQYVTILSRSIPGCIQDGIGGDIKPVSA 417
           PQPM LK SAR+ WNAW+QLGNM+PE+AMEQY+ ++S SIP  ++D  G  ++ + A
Sbjct: 217 PQPMPLKFSARSKWNAWQQLGNMSPEMAMEQYINLVSTSIPEWMKDAFGDQVRKLHA 273

Source: Vernicia fordii

Species: Vernicia fordii

Genus: Vernicia

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496959|ref|XP_003517332.1| PREDICTED: uncharacterized protein LOC100812452 [Glycine max]

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 84/151 (55%), Positives = 107/151 (70%), Gaps = 9/151 (5%)

Query: 270 RSEEIEVLESNCD---NEIGERNRDEEDDVKVVSFDEDDDWEGIERTELERLFGAAVAFV 326
           + EE+E+  S C+   NEI E + +EE      S  ++DDWEGIERTELER FGAAV FV
Sbjct: 146 KVEEVEI--SQCERYYNEIEESSMNEEMGENKGSVVDEDDWEGIERTELERRFGAAVVFV 203

Query: 327 GNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPE 386
           G+K NA    ++ +DVKM+L+G H+IAT GPC EPQPMALK SARA W AW+QLG M+PE
Sbjct: 204 GSKSNA----NLSNDVKMKLHGYHRIATQGPCHEPQPMALKFSARAKWIAWRQLGIMSPE 259

Query: 387 IAMEQYVTILSRSIPGCIQDGIGGDIKPVSA 417
            AMEQY+++LS +IP  I +    + KP SA
Sbjct: 260 EAMEQYISLLSENIPDWIVENPYDNAKPASA 290

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564133|ref|XP_003550311.1| PREDICTED: acyl-CoA-binding domain-containing protein 3 [Glycine max]

 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 81/172 (47%), Positives = 108/172 (62%), Gaps = 13/172 (7%)

Query: 272 EEIEVLESNCDNEIGERNRDEEDDVKVVSFDEDDDWEGIERTELERLFGAAVAFVGNKCN 331
           EEI V  S  D++ G+ N D          D DDDWEGIER+ELE+ F AA  FV  + N
Sbjct: 225 EEINVEPSVVDSD-GKENED----------DYDDDWEGIERSELEKEFMAATEFVSGEEN 273

Query: 332 AGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQ 391
             R+  +GS+++M+LYGL+K+AT G CREPQPMALK++ARA WNAW++LGNM PE+AMEQ
Sbjct: 274 --RLGGVGSNLRMELYGLYKVATEGLCREPQPMALKLAARAKWNAWQKLGNMNPEVAMEQ 331

Query: 392 YVTILSRSIPGCIQDGIGGDIKPVSADAEACGELVCDLKAYQVAQLGAVDKR 443
           Y+++LS   PG I+D   G  +  +   E  G    DL      Q   + +R
Sbjct: 332 YISLLSDKFPGWIKDTSAGMSEHETTRPEVSGSDASDLSTTLSHQQMIITER 383

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249288|ref|NP_001240280.1| uncharacterized protein LOC100813431 [Glycine max] gi|255648403|gb|ACU24652.1| unknown [Glycine max]

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 82/151 (54%), Positives = 106/151 (70%), Gaps = 9/151 (5%)

Query: 270 RSEEIEVLESNCD---NEIGERNRDEEDDVKVVSFDEDDDWEGIERTELERLFGAAVAFV 326
           + EE+E+  S C+   NEI E + +EE      S  ++DDWEGIE TELER FGAAV FV
Sbjct: 146 KVEEVEI--SQCERNYNEIDESSMNEEIGENKGSVVDEDDWEGIESTELERRFGAAVVFV 203

Query: 327 GNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPE 386
           G+K NA    ++ +DVKM+L+G H+IAT GPC EPQPMALK SARA W A +QLG M+PE
Sbjct: 204 GSKSNA----NLSNDVKMKLHGYHRIATQGPCHEPQPMALKFSARAKWIARRQLGIMSPE 259

Query: 387 IAMEQYVTILSRSIPGCIQDGIGGDIKPVSA 417
            AMEQ++++LS SIP  I++    + KP SA
Sbjct: 260 EAMEQFISLLSESIPDWIEENPYDNAKPASA 290

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|301073323|gb|ADK56449.1| acyl-CoA-binding protein [Vitis vinifera]

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 67/116 (57%), Positives = 87/116 (75%), Gaps = 3/116 (2%)

Query: 303 EDDDWEGIERTELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQ 362
           E+DDWEG+ER+ELER+F AA  FVG+  N G      SD +M+LYGLHKIA  GPC EPQ
Sbjct: 127 EEDDWEGVERSELERVFAAAANFVGS-GNKG--DGWSSDAQMELYGLHKIAVEGPCHEPQ 183

Query: 363 PMALKVSARANWNAWKQLGNMTPEIAMEQYVTILSRSIPGCIQDGIGGDIKPVSAD 418
           PM LK+SARA WNAW+++GNM+ E+AMEQY+ +LS  +PG ++    GD KP S++
Sbjct: 184 PMPLKLSARAKWNAWQRMGNMSREVAMEQYIALLSDRVPGWMEASSAGDDKPESSE 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458798|ref|XP_002285196.1| PREDICTED: acyl-CoA-binding domain-containing protein 3 isoform 1 [Vitis vinifera]

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 67/116 (57%), Positives = 87/116 (75%), Gaps = 3/116 (2%)

Query: 303 EDDDWEGIERTELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQ 362
           E+DDWEG+ER+ELER+F AA  FVG+  N G      SD +M+LYGLHKIA  GPC EPQ
Sbjct: 127 EEDDWEGVERSELERVFAAAANFVGS-GNKG--DGWSSDAQMELYGLHKIAVEGPCHEPQ 183

Query: 363 PMALKVSARANWNAWKQLGNMTPEIAMEQYVTILSRSIPGCIQDGIGGDIKPVSAD 418
           PM LK+SARA WNAW+++GNM+ E+AMEQY+ +LS  +PG ++    GD KP S++
Sbjct: 184 PMPLKLSARAKWNAWQRMGNMSREVAMEQYIALLSDRVPGWMEASSAGDDKPESSE 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142221|emb|CBI19424.3| unnamed protein product [Vitis vinifera]

 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 67/116 (57%), Positives = 87/116 (75%), Gaps = 3/116 (2%)

Query: 303 EDDDWEGIERTELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQ 362
           E+DDWEG+ER+ELER+F AA  FVG+  N G      SD +M+LYGLHKIA  GPC EPQ
Sbjct: 127 EEDDWEGVERSELERVFAAAANFVGSG-NKG--DGWSSDAQMELYGLHKIAVEGPCHEPQ 183

Query: 363 PMALKVSARANWNAWKQLGNMTPEIAMEQYVTILSRSIPGCIQDGIGGDIKPVSAD 418
           PM LK+SARA WNAW+++GNM+ E+AMEQY+ +LS  +PG ++    GD KP S++
Sbjct: 184 PMPLKLSARAKWNAWQRMGNMSREVAMEQYIALLSDRVPGWMEASSAGDDKPESSE 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	443
TAIR|locus:2135947	366	ACBP3 "acyl-CoA-binding domain	0.593	0.718	0.336	2.2e-34
TAIR|locus:2137380	354	ACBP2 "AT4G27780" [Arabidopsis	0.363	0.454	0.406	1.9e-28
TAIR|locus:2178426	338	ACBP1 "acyl-CoA binding protei	0.376	0.494	0.372	1.9e-28
UNIPROTKB|F6QBK4	198	ECI2 "Uncharacterized protein"	0.135	0.303	0.433	9.4e-10
UNIPROTKB|F1LLU7	197	ECI2 "Enoyl-CoA delta isomeras	0.142	0.319	0.412	1.5e-09
UNIPROTKB|F8WAW4	140	ECI2 "Enoyl-CoA delta isomeras	0.142	0.45	0.412	1.5e-09
WB|WBGene00018949	146	acbp-4 [Caenorhabditis elegans	0.176	0.534	0.405	1.1e-08
UNIPROTKB|C9JB63	220	ECI2 "Enoyl-CoA delta isomeras	0.142	0.286	0.412	3.4e-08
ZFIN|ZDB-GENE-040718-392	392	zgc:92030 "zgc:92030" [Danio r	0.142	0.160	0.453	4.9e-08
UNIPROTKB|F8W6J1	152	ECI2 "Enoyl-CoA delta isomeras	0.182	0.532	0.356	5.1e-08

TAIR|locus:2135947 ACBP3 "acyl-CoA-binding domain 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 97/288 (33%), Positives = 161/288 (55%)

Query:   137 KDEVSVARSEEIEFLESKCEARKIQKDDGGKCSTFDCKEMLMDKNNFFESEKMAKIEAES 196
             K E+ V  +E++ F   K +AR ++     +    D    L+D+    E++++ +++   
Sbjct:    41 KPEIGVGVTEDVRF-GMKMDARVLESQRNFQ--VVDENVELVDRFLSEEADRVYEVDEAV 97

Query:   197 TKTVTRMTESEETEVSKSNCDNEV--DEA-----NKNQEDGGES-SIFNC--KQILVYRS 246
             T       + E    + ++ +N V  +E         Q D  E+ SI +   + ++    
Sbjct:    98 TGNAKICGDREAESSAAASSENYVIAEEVILVRGQDEQSDSAEAESISSVSPENVVAEEI 157

Query:   247 NFFESENIA------AVKSESAITEVGMARSEEIEVLESNCDNEIGERNRDEEDDVKV-V 299
                  E +        V++E +  +V +A SEE+ V +S+  N + E + + E++ K  +
Sbjct:   158 KSQGQEEVTELGRSGCVENEESGGDVLVAESEEVRVEKSS--NMVEESDAEAENEEKTEL 215

Query:   300 SFDEDDDWEGIERTELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCR 359
             + +EDDDWEGIER+ELE+ F AAV  +     +G+   IG++ KM+L+GLHKIAT G CR
Sbjct:   216 TIEEDDDWEGIERSELEKAFAAAVNLLEE---SGKAEEIGAEAKMELFGLHKIATEGSCR 272

Query:   360 EPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVTILSRSIPGCIQDG 407
             E QPMA+ +SARA WNAW++LGNM+ E AMEQY+ ++S+ IPG  + G
Sbjct:   273 EAQPMAVMISARAKWNAWQKLGNMSQEEAMEQYLALVSKEIPGLTKAG 320

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA;ISS;IDA

GO:0005576 "extracellular region" evidence=ISM;IDA

GO:0005615 "extracellular space" evidence=IDA

GO:0015908 "fatty acid transport" evidence=TAS

GO:0006952 "defense response" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0009617 "response to bacterium" evidence=IEP

GO:0009646 "response to absence of light" evidence=IEP

TAIR|locus:2137380 ACBP2 "AT4G27780" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 72/177 (40%), Positives = 103/177 (58%)

Query:   249 FESENIAAVKS-ESAITEVGMARSEEIEVLESNC-------DNEIGERNRDEEDDVKVVS 300
             F+ +N++  +  E +  E+      +   L+S+C       D+ + E+     D V    
Sbjct:    31 FKEDNLSLTRHPEESQLEI-KPEGVDSRRLDSSCGGFGGEADSLVAEQGSSRSDSVAGDD 89

Query:   301 FDEDDDWEGIERTELERLFGAAVAFVGNKCNAGRISS-IGSDVKMQLYGLHKIATVGPCR 359
              +EDDDWEG+E TEL+  F AA  FV     A R+S  + SDV+ QLYGL+KIAT GPC 
Sbjct:    90 SEEDDDWEGVESTELDEAFSAATLFVTTAA-ADRLSQKVPSDVQQQLYGLYKIATEGPCT 148

Query:   360 EPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVTILSRSIPGCIQDGI-----GGD 411
              PQP ALK++ARA W AW++LG M PE AME+Y+ I+++  P  +  G+     GGD
Sbjct:   149 APQPSALKMTARAKWQAWQKLGAMPPEEAMEKYIEIVTQLYPTWLDGGVKAGSRGGD 205

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA;TAS

GO:0009514 "glyoxysome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010288 "response to lead ion" evidence=IEP

GO:0032791 "lead ion binding" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2178426 ACBP1 "acyl-CoA binding protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 67/180 (37%), Positives = 107/180 (59%)

Query:   249 FESENIAAVKSESAITEV-GMARSEEIEVLESNCDNEIGERN--RDEEDDVKVVSFDEDD 305
             F+ EN++  ++ +  +E   + + E +  +    D+ I E+   R +ED+       +DD
Sbjct:    31 FKDENLSLTRNHTTQSEYENLRKVETLTGISGETDSLIAEQGSLRGDEDE------SDDD 84

Query:   306 DWEGIERTELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMA 365
             DWEG+E TEL+  F AA AFV    +      + +++++QLYGL+KIAT GPC  PQP A
Sbjct:    85 DWEGVESTELDEAFSAATAFVAAAASDRLSQKVSNELQLQLYGLYKIATEGPCTAPQPSA 144

Query:   366 LKVSARANWNAWKQLGNMTPEIAMEQYVTILSRSIPGCIQDGIGGDIKPVSADAEACGEL 425
             LK++ARA W AW++LG M PE AME+Y+ ++++  P  ++   GG  K  +   EA G +
Sbjct:   145 LKMTARAKWQAWQKLGAMPPEEAMEKYIDLVTQLYPAWVE---GGS-KRRNRSGEAAGPM 200

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006869 "lipid transport" evidence=TAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0010288 "response to lead ion" evidence=IEP;IMP

GO:0032791 "lead ion binding" evidence=IDA

GO:0006629 "lipid metabolic process" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

GO:0070300 "phosphatidic acid binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008289 "lipid binding" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010029 "regulation of seed germination" evidence=IMP

GO:0010162 "seed dormancy process" evidence=IMP

GO:1900140 "regulation of seedling development" evidence=IMP

GO:0000062 "fatty-acyl-CoA binding" evidence=IDA

UNIPROTKB|F6QBK4 ECI2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 148 (57.2 bits), Expect = 9.4e-10, P = 9.4e-10
 Identities = 26/60 (43%), Positives = 40/60 (66%)

Query:   339 GSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVTILSR 398
             G++VK++LY L+K AT GPC  P+P  L    +  W+AW  LG+++ E A + YV ++SR
Sbjct:    38 GNEVKLKLYALYKQATEGPCNVPKPGMLDFINKTKWDAWNALGSLSKEAARQNYVDLVSR 97

GO:0003824 "catalytic activity" evidence=IEA

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

UNIPROTKB|F1LLU7 ECI2 "Enoyl-CoA delta isomerase 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 146 (56.5 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 26/63 (41%), Positives = 40/63 (63%)

Query:   339 GSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVTILSR 398
             G++VK++LY L+K AT GPC  P+P    +  +A W+AW  LG++  E A + YV ++S 
Sbjct:    58 GNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVDLVSS 117

Query:   399 SIP 401
               P
Sbjct:   118 LSP 120

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|F8WAW4 ECI2 "Enoyl-CoA delta isomerase 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 146 (56.5 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 26/63 (41%), Positives = 40/63 (63%)

Query:   339 GSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVTILSR 398
             G++VK++LY L+K AT GPC  P+P    +  +A W+AW  LG++  E A + YV ++S 
Sbjct:    28 GNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVDLVSS 87

Query:   399 SIP 401
               P
Sbjct:    88 LSP 90

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

WB|WBGene00018949 acbp-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 138 (53.6 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 32/79 (40%), Positives = 42/79 (53%)

Query:   315 LERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANW 374
             L+  F AAV  +      G I +  +D ++Q+Y L+K AT G C   QP   ++  R  W
Sbjct:     5 LDEQFEAAVWIINALPKNGPIKTSIND-QLQMYSLYKQATSGKCDTIQPYFFQIEQRMKW 63

Query:   375 NAWKQLGNMTPEIAMEQYV 393
             NAW QLGNM    A  QYV
Sbjct:    64 NAWNQLGNMDEAEAKAQYV 82

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

UNIPROTKB|C9JB63 ECI2 "Enoyl-CoA delta isomerase 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 146 (56.5 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 26/63 (41%), Positives = 40/63 (63%)

Query:   339 GSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVTILSR 398
             G++VK++LY L+K AT GPC  P+P    +  +A W+AW  LG++  E A + YV ++S 
Sbjct:   105 GNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVDLVSS 164

Query:   399 SIP 401
               P
Sbjct:   165 LSP 167

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

ZFIN|ZDB-GENE-040718-392 zgc:92030 "zgc:92030" [Danio rerio (taxid:7955)]

 Score = 153 (58.9 bits), Expect = 4.9e-08, P = 4.9e-08
 Identities = 29/64 (45%), Positives = 44/64 (68%)

Query:   339 GSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVTILSR 398
             G++VK+++Y L K ATVGPC  P+P  L    +  W+AWK LG+++ E A +QYV ++S 
Sbjct:    58 GNEVKLKIYALFKQATVGPCNTPKPGMLDFVNKVKWDAWKGLGSISQEEARQQYVDLIS- 116

Query:   399 SIPG 402
             S+ G
Sbjct:   117 SLVG 120

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

UNIPROTKB|F8W6J1 ECI2 "Enoyl-CoA delta isomerase 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 132 (51.5 bits), Expect = 5.1e-08, P = 5.1e-08
 Identities = 31/87 (35%), Positives = 50/87 (57%)

Query:   339 GSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVTILSR 398
             G++VK++LY L+K AT GPC  P+P    +  +A W+AW  LG++ P++ +   VT  S+
Sbjct:    58 GNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSL-PKVLVISIVTF-SK 115

Query:   399 SIPGCIQDGIG--GDIKPVSADAEACG 423
              +   I  G+     ++  S  AE CG
Sbjct:   116 CL--FIDHGLRLFVIVRSGSCQAELCG 140

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	443
pfam00887	87	pfam00887, ACBP, Acyl CoA binding protein	5e-22
cd00435	85	cd00435, ACBP, Acyl CoA binding protein (ACBP) bin	3e-15
PTZ00458	90	PTZ00458, PTZ00458, acyl CoA binding protein; Prov	2e-08
COG4281	87	COG4281, ACB, Acyl-CoA-binding protein [Lipid meta	9e-05

>gnl|CDD|216174 pfam00887, ACBP, Acyl CoA binding protein

 Score = 89.6 bits (223), Expect = 5e-22
 Identities = 34/82 (41%), Positives = 48/82 (58%), Gaps = 3/82 (3%)

Query: 315 LERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANW 374
           LE  F AAV FV      GR S+   + K++LY L+K AT G    P+P    V  +A W
Sbjct: 1   LEEEFEAAVKFVKKLPKDGRPSN---EEKLKLYALYKQATEGDVNTPRPGMFDVIGKAKW 57

Query: 375 NAWKQLGNMTPEIAMEQYVTIL 396
           +AWK+L  M+ E AM++YV ++
Sbjct: 58  DAWKKLKGMSKEEAMKKYVELV 79

Length = 87

>gnl|CDD|238248 cd00435, ACBP, Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity

 Score = 70.0 bits (172), Expect = 3e-15
 Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 5/87 (5%)

Query: 315 LERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANW 374
           L+  F AA   V         +   ++ K+QLY L+K ATVG C   +P    +  RA W
Sbjct: 1   LQEEFEAAAEKVKK-----LKTKPSNEEKLQLYSLYKQATVGDCNTERPGMFDLKGRAKW 55

Query: 375 NAWKQLGNMTPEIAMEQYVTILSRSIP 401
           +AW  L  M+ E AM+ Y+  +   I 
Sbjct: 56  DAWNSLKGMSKEDAMKAYIAKVEELIA 82

Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected. Length = 85

>gnl|CDD|185637 PTZ00458, PTZ00458, acyl CoA binding protein; Provisional

 Score = 51.4 bits (123), Expect = 2e-08
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)

Query: 315 LERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANW 374
           +  LF   V+F+ +      +S    ++K+ LY  +K +TVG C   +P   K   R  +
Sbjct: 1   MADLFEECVSFINSLPKTVNLSV---EIKLDLYKYYKQSTVGNCNIKEPSMFKYQDRKKY 57

Query: 375 NAWKQLGNMTPEIAMEQYVTILSRSIP 401
            AWK + N+  E A ++YV I++   P
Sbjct: 58  EAWKSIENLNREDAKKRYVEIVTELFP 84

Length = 90

>gnl|CDD|226731 COG4281, ACB, Acyl-CoA-binding protein [Lipid metabolism]

 Score = 40.6 bits (95), Expect = 9e-05
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 339 GSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVTIL 396
            +D  ++LY L K  +VG     +P    +  R  + AW  L   + E A ++Y+ ++
Sbjct: 21  SNDELLKLYALFKQGSVGDNDGEKPGFFDIVGRYKYEAWAGLKGKSQEDARQEYIALV 78

Length = 87

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	443
PTZ00458	90	acyl CoA binding protein; Provisional	99.96
cd00435	85	ACBP Acyl CoA binding protein (ACBP) binds thiol e	99.96
PF00887	87	ACBP: Acyl CoA binding protein; InterPro: IPR00058	99.96
KOG0817	142	consensus Acyl-CoA-binding protein [Lipid transpor	99.94
COG4281	87	ACB Acyl-CoA-binding protein [Lipid metabolism]	99.87
KOG3878	469	consensus Protein involved in maintenance of Golgi	99.04
smart00295	207	B41 Band 4.1 homologues. Also known as ezrin/radix	96.89
PF00373	126	FERM_M: FERM central domain; InterPro: IPR019748 T	96.32
KOG3530	616	consensus FERM domain protein EHM2 [General functi	86.31

>PTZ00458 acyl CoA binding protein; Provisional

Probab=99.96  E-value=2.6e-29  Score=208.09  Aligned_cols=87  Identities=29%  Similarity=0.547  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCCCCCCCcchhhHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 013405          317 RLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVTIL  396 (443)
Q Consensus       317 EaFeAAVefVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~PKPG~fD~vGRAKWnAWKkLKGMSKEEAMrKYIELV  396 (443)
                      +.|.+|+.+|++++..+   .++++++|+|||||||||+|||+.++|++|++++|+||+||++++|||+++||++||++|
T Consensus         3 ~~F~~A~~~v~~~~~~~---~~s~d~~L~lYalyKQAt~G~c~~~~P~~~d~~~raKw~AW~~l~~ms~~eA~~~YI~l~   79 (90)
T PTZ00458          3 DLFEECVSFINSLPKTV---NLSVEIKLDLYKYYKQSTVGNCNIKEPSMFKYQDRKKYEAWKSIENLNREDAKKRYVEIV   79 (90)
T ss_pred             HHHHHHHHHHHhCCCCC---CCCHHHHHHHHHHHhhhccCCCCCCCCCcccHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            46999999999987542   589999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCcCcccC
Q 013405          397 SRSIPGCIQD  406 (443)
Q Consensus       397 eKLlPgW~e~  406 (443)
                      +++.|+|.+.
T Consensus        80 ~~l~~~w~~~   89 (90)
T PTZ00458         80 TELFPNWEKG   89 (90)
T ss_pred             HHHhhccccC
Confidence            9999999753

>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity

Probab=99.96  E-value=3.1e-29  Score=204.00  Aligned_cols=85  Identities=34%  Similarity=0.546  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCCCCCCCcchhhHHHHHHHHHcCCCCHHHHHHHHHH
Q 013405          315 LERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVT  394 (443)
Q Consensus       315 LEEaFeAAVefVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~PKPG~fD~vGRAKWnAWKkLKGMSKEEAMrKYIE  394 (443)
                      |++.|++|+.+|++++     .+++++++|+|||||||||+|||+.++|++||+++|+||+||++++|||+++||++||+
T Consensus         1 ~~~~F~~A~~~v~~~~-----~~~~~~~~L~lYalyKQAt~G~~~~~~P~~~d~~~~~K~~AW~~l~~ms~~eA~~~YV~   75 (85)
T cd00435           1 LQEEFEAAAEKVKKLK-----TKPSNEEKLQLYSLYKQATVGDCNTERPGMFDLKGRAKWDAWNSLKGMSKEDAMKAYIA   75 (85)
T ss_pred             ChHHHHHHHHHHHhCC-----CCcCHHHHHHHHHHHHHhccCCCCCCCCCcccHhhHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4679999999999986     36899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCcCcc
Q 013405          395 ILSRSIPGCI  404 (443)
Q Consensus       395 LVeKLlPgW~  404 (443)
                      ++++++|.|.
T Consensus        76 ~~~~l~~~~~   85 (85)
T cd00435          76 KVEELIAKYA   85 (85)
T ss_pred             HHHHHhhccC
Confidence            9999999983

Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.

>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []

Probab=99.96  E-value=3.7e-29  Score=200.75  Aligned_cols=87  Identities=41%  Similarity=0.694  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCCCCCCCcchhhHHHHHHHHHcCCCCHHHHHHHHHH
Q 013405          315 LERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVT  394 (443)
Q Consensus       315 LEEaFeAAVefVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~PKPG~fD~vGRAKWnAWKkLKGMSKEEAMrKYIE  394 (443)
                      |+++|..|+.+|+.++..   .+++++++|+|||||||||+|||+.++|+++|+++|+||+||++++|||+++||++||+
T Consensus         1 Le~~F~~A~~~v~~~~~~---~~~~~~~~L~LYalyKQAt~Gd~~~~~P~~~d~~~~~K~~AW~~l~gms~~eA~~~Yi~   77 (87)
T PF00887_consen    1 LEEEFEAAVEFVSNLPKK---SQLSNDDKLELYALYKQATHGDCDTPRPGFFDIEGRAKWDAWKALKGMSKEEAMREYIE   77 (87)
T ss_dssp             HHHHHHHHHHHHHHSSSC---STS-HHHHHHHHHHHHHHHTSS--S-CTTTTCHHHHHHHHHHHTTTTTHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcccc---CCCCHHHHHHHHHHHHHHHhCCCcCCCCcchhHHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence            789999999999999853   37999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCcCcc
Q 013405          395 ILSRSIPGCI  404 (443)
Q Consensus       395 LVeKLlPgW~  404 (443)
                      ++++++|.|.
T Consensus        78 ~v~~~~~~~~   87 (87)
T PF00887_consen   78 LVEELIPKYE   87 (87)
T ss_dssp             HHHHHHHHH-
T ss_pred             HHHHHHHhcC
Confidence            9999999883

ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....

>KOG0817 consensus Acyl-CoA-binding protein [Lipid transport and metabolism]

Probab=99.94  E-value=7.9e-27  Score=207.15  Aligned_cols=114  Identities=30%  Similarity=0.447  Sum_probs=98.6

Q ss_pred             chHHHHHHHHHHHHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCCCCCCCcchhhHHHHHHHHHcCCCCHHHHHHHH
Q 013405          313 TELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQY  392 (443)
Q Consensus       313 sELEEaFeAAVefVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~PKPG~fD~vGRAKWnAWKkLKGMSKEEAMrKY  392 (443)
                      ..+...|.+|+..++++++     .++++++|+|||||||||+|||+.++||+||+++|+||+||++++|||+++||+.|
T Consensus         3 ~~~~~~Fe~a~~~~~~l~~-----~p~~ee~L~lYglyKQAt~G~~~~~kPg~~d~~~k~Kw~AW~~l~~~s~~eA~~~Y   77 (142)
T KOG0817|consen    3 ATLEAKFEAAAEAVKNLKK-----KPSNEELLKLYGLYKQATVGDCNTPKPGFFDEEGKAKWQAWNSLGGMSKEEAMEAY   77 (142)
T ss_pred             chHHHHHHHHHHHHHhccc-----CCCHHHHHHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            4578899999999999973     58999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCcCcccCCCCCCCCCcccc-ccccccccccchh
Q 013405          393 VTILSRSIPGCIQDGIGGDIKPVSAD-AEACGELVCDLKA  431 (443)
Q Consensus       393 IELVeKLlPgW~e~~~~~~~Kp~ss~-~~~~g~~v~~~~~  431 (443)
                      |+++.+++|.|....+.......... ....+...+++..
T Consensus        78 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (142)
T KOG0817|consen   78 VEKVEELIPKYGAEAETEEKTELTISEDDDWEGIEPSELE  117 (142)
T ss_pred             HHHHHHHHHHhhcccccccCcccccccccccccccccchh
Confidence            99999999999988776655554433 3355555555555

>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]

Probab=99.87  E-value=2.2e-22  Score=166.24  Aligned_cols=84  Identities=23%  Similarity=0.341  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCCCCCCCcchhhHHHHHHHHHcCCCCHHHHHHHHHH
Q 013405          315 LERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVT  394 (443)
Q Consensus       315 LEEaFeAAVefVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~PKPG~fD~vGRAKWnAWKkLKGMSKEEAMrKYIE  394 (443)
                      |...|+.|..-|+.++     .+|++++.|+|||||||+++||.+..+||+||++||+||+||..|+|.|+++|.++||.
T Consensus         2 ~s~~Feqa~~dV~~L~-----~kP~~d~LLkLYAL~KQ~s~GD~~~ekPG~~d~~gr~K~eAW~~LKGksqedA~qeYia   76 (87)
T COG4281           2 LSTRFEQAQTDVKELS-----EKPSNDELLKLYALFKQGSVGDNDGEKPGFFDIVGRYKYEAWAGLKGKSQEDARQEYIA   76 (87)
T ss_pred             hhhHHHHHHHHHHHhc-----cCCCcHHHHHHHHHHHhccccccCCCCCCccccccchhHHHHhhccCccHHHHHHHHHH
Confidence            5678999999999997     36899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCcCc
Q 013405          395 ILSRSIPGC  403 (443)
Q Consensus       395 LVeKLlPgW  403 (443)
                      +|++|..++
T Consensus        77 lVeeLkak~   85 (87)
T COG4281          77 LVEELKAKY   85 (87)
T ss_pred             HHHHHHhhc
Confidence            999997655

>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.04  E-value=4e-10  Score=113.66  Aligned_cols=90  Identities=27%  Similarity=0.462  Sum_probs=82.5

Q ss_pred             hHHHHHHHHHHHHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCC---CCCCCcchhhHHHHHHHHHcCCCCHHHHHH
Q 013405          314 ELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCRE---PQPMALKVSARANWNAWKQLGNMTPEIAME  390 (443)
Q Consensus       314 ELEEaFeAAVefVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~---PKPG~fD~vGRAKWnAWKkLKGMSKEEAMr  390 (443)
                      .|++-+..|+.|.+..  .|+..+++.+++|+|-||.||+.+||.++   |.-|++|++|+.+..+|..||.||+++||.
T Consensus        31 ~LeElY~LA~~fyKe~--~GKa~h~~YEd~lKLial~kQv~~Gp~n~d~~p~~G~lDv~GnDr~~~W~~LG~~sre~AM~  108 (469)
T KOG3878|consen   31 PLEELYRLAFTFYKEN--SGKAIHLSYEDNLKLIALKKQVALGPFNTDRAPALGVLDVIGNDRQQHWQLLGEISREQAME  108 (469)
T ss_pred             CHHHHHHHHHHHHHhc--cCCccCCChhhhhhhhhhHhhhhcCCCCcccCcccceeecccChHHHHHHHHhcccHHHHHH
Confidence            6999999999999965  57778999999999999999999999996   344799999999999999999999999999


Q ss_pred             HHHHHHHhhCcCccc
Q 013405          391 QYVTILSRSIPGCIQ  405 (443)
Q Consensus       391 KYIELVeKLlPgW~e  405 (443)
                      .||.|++++++-|.+
T Consensus       109 ~FV~Lldr~C~~F~~  123 (469)
T KOG3878|consen  109 GFVDLLDRMCSAFRP  123 (469)
T ss_pred             HHHHHHHhcchhhhh
Confidence            999999999997753

>smart00295 B41 Band 4

Probab=96.89  E-value=0.0041  Score=54.17  Aligned_cols=84  Identities=20%  Similarity=0.181  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCCCC-------------CC-Ccch-------hhHHH
Q 013405          315 LERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQ-------------PM-ALKV-------SARAN  373 (443)
Q Consensus       315 LEEaFeAAVefVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~PK-------------PG-~fD~-------vGRAK  373 (443)
                      +.--|..+..-+...    .+ .++.++-+.|-||.-|+..||++.+.             |. ..+-       ....=
T Consensus        99 ~~~ly~Q~~~di~~g----~~-~~~~~~~~~Laal~~q~~~gd~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~i  173 (207)
T smart00295       99 LNLLYLQVRNDILEG----RL-PCPEEEALLLAALALQAEFGDYDEELHVLLKELSLKRFLPKQLLDSEKRTLKEWRERI  173 (207)
T ss_pred             HHHHHHHHHHHHHcC----cc-CCCHHHHHHHHHHHHHHHhcCCChHhcCCccccccceeCChhhhhhccccHHHHHHHH
Confidence            445677777666543    33 56889999999999999999998532             11 1111       12223


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhhCcCcc
Q 013405          374 WNAWKQLGNMTPEIAMEQYVTILSRSIPGCI  404 (443)
Q Consensus       374 WnAWKkLKGMSKEEAMrKYIELVeKLlPgW~  404 (443)
                      .++|+++.|||+.+||.+||+++.++ |.|.
T Consensus       174 ~~~~~~~~~~s~~~a~~~yl~~~~~l-p~fG  203 (207)
T smart00295      174 VSLHKELIGLSPEEAKLKYLELAEKL-PTYG  203 (207)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHhccc-cccC
Confidence            48899999999999999999999987 7664

1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.

>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4

Probab=96.32  E-value=0.023  Score=46.27  Aligned_cols=85  Identities=22%  Similarity=0.259  Sum_probs=58.0

Q ss_pred             hHHHHHHHHHHHHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCCC--C-CCC-------------cc-------hhh
Q 013405          314 ELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREP--Q-PMA-------------LK-------VSA  370 (443)
Q Consensus       314 ELEEaFeAAVefVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~P--K-PG~-------------fD-------~vG  370 (443)
                      .+.--|..+..-|-.    |.+ .++.++-++|-||.-|+..||++..  . .+.             +.       ...
T Consensus        10 ~~~lly~Q~~~~vl~----g~~-~~~~e~a~~LAAl~~q~~~gd~~~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~   84 (126)
T PF00373_consen   10 TRHLLYLQARRDVLQ----GRL-PCSEEDAIKLAALQLQAEYGDYNSEQEHSSGYIDPEIKEFQLENFIPKAPKLIKKMK   84 (126)
T ss_dssp             HHHHHHHHHHHHHHT----TSS-TS-HHHHHHHHHHHHHHHHTSSTTTTTSSTTTTTGSHHCTCGHGTSSHHHHHHCCST
T ss_pred             HHHHHHHHHHHHHHc----CcC-CCCHHHHHHHHHHHHHHHhcCCCcccccCcccccccccchhhhhhhhhhHHHHhhhh
Confidence            445566777766653    333 6899999999999999999999831  1 111             11       122


Q ss_pred             HHHH-----HHHHHcCCCCHHHHHHHHHHHHHhhCcCcc
Q 013405          371 RANW-----NAWKQLGNMTPEIAMEQYVTILSRSIPGCI  404 (443)
Q Consensus       371 RAKW-----nAWKkLKGMSKEEAMrKYIELVeKLlPgW~  404 (443)
                      ...|     ..|+++.|||+.+||..||+++.++ |.|.
T Consensus        85 ~~~~~~~I~~~~~~l~~~s~~~a~~~fl~~~~~~-p~yG  122 (126)
T PF00373_consen   85 QKEWEKRILEQHKKLRGMSPEEAKLQFLQICQSL-PTYG  122 (126)
T ss_dssp             HHHHHHHHHHHHHHTTT--HHHHHHHHHHHHCTS-TTTT
T ss_pred             HHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC-CCCC
Confidence            2333     7899999999999999999999974 6553

1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....

>KOG3530 consensus FERM domain protein EHM2 [General function prediction only]

Probab=86.31  E-value=1.6  Score=47.86  Aligned_cols=83  Identities=16%  Similarity=0.143  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHh---ccCCCCCCCCCChHHHHHHHHhhhccccCCCCCCC--CC---Ccch-------hhHHHHHHHHH
Q 013405          315 LERLFGAAVAFVG---NKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQ--PM---ALKV-------SARANWNAWKQ  379 (443)
Q Consensus       315 LEEaFeAAVefVr---sLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~PK--PG---~fD~-------vGRAKWnAWKk  379 (443)
                      |.+.+..-.=|++   .+. .|++ ..|-+.-.+|-||-=|+-.|||+.+.  |+   .|.+       -..+=.+-||.
T Consensus        98 Lree~tRYqfflQlKqDll-~GRL-~Cp~~~AaeLaAl~lQsELGDYn~~~Ht~~yVSefRf~p~Qte~LE~~I~e~hK~  175 (616)
T KOG3530|consen   98 LREENTRYQFFLQLKQDLL-SGRL-YCPFETAAELAALILQSELGDYNEEEHTGGYVSEFRFLPNQTEELEERIFELHKE  175 (616)
T ss_pred             hhchhhHHHHHHHHHHHHh-cCCC-CCchhhHHHHHHHHHHHHhcCCChhhccccceeeeEecccccHHHHHHHHHHHHH
Confidence            4455544444444   221 2554 78899999999999999999999842  33   2222       23445688999


Q ss_pred             cCCCCHHHHHHHHHHHHHhh
Q 013405          380 LGNMTPEIAMEQYVTILSRS  399 (443)
Q Consensus       380 LKGMSKEEAMrKYIELVeKL  399 (443)
                      ++|+|+.+|+-.|+..+.-|
T Consensus       176 ~rGqspaqAElnyLnkAkwL  195 (616)
T KOG3530|consen  176 LRGQSPAQAELNYLNKAKWL  195 (616)
T ss_pred             hcCCCHHHHHHHHHhhhhhh
Confidence            99999999999999998755

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	443
2cqu_A	116	Solution Structure Of Rsgi Ruh-045, A Human Acyl-Co		2e-08
2lbb_A	96	Solution Structure Of Acyl Coa Binding Protein From		1e-07
2wh5_A	106	Crystal Structure Of Human Acyl-Coa Binding Domain		4e-07
2cop_A	109	Solution Structure Of Rsgi Ruh-040, An Acbp Domain		4e-07
3flv_A	119	The Crystal Structure Of Human Acyl-Coenzymea Bindi		6e-06
1hbk_A	89	Acyl-Coa Binding Protein From Plasmodium Falciparum		9e-06
2fj9_A	86	High Resolution Crystal Structure Of The Unliganded		5e-04
2cb8_A	87	High Resolution Crystal Structure Of Liganded Human		5e-04
2fdq_A	86	Crystal Structure Of Acbp From Armadillo Harderian		7e-04

>pdb|2CQU|A Chain A, Solution Structure Of Rsgi Ruh-045, A Human Acyl-Coa Binding Protein Length = 116

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 339 GSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYV 393
           G++VK++LY L+K AT GPC  P+P    +  +A W+AW  LG++  E A + YV
Sbjct: 35  GNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYV 89

>pdb|2LBB|A Chain A, Solution Structure Of Acyl Coa Binding Protein From Babesia Bovis T2bo Length = 96

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 319 FGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWK 378
           F AAV +V N           +D K+  Y  +K ATVG C +P+P  L++  +  W AW 
Sbjct: 14  FDAAVKYVSNTTTM----MASNDDKLCFYKYYKQATVGDCNKPKPGMLQLQEKYKWEAWN 69
Query: 379 QLGNMTPEIAMEQYVTILSRSIP 401
            L  M+ E A E YV +L    P
Sbjct: 70  ALRGMSTESAKEAYVKLLDTLAP 92

>pdb|2WH5|A Chain A, Crystal Structure Of Human Acyl-Coa Binding Domain 4 Complexed With Stearoyl-Coa Length = 106

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 314 ELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARAN 373
           + ++ F AAV+ + N    G       ++ ++ Y  +K AT+GPC  P+P       R  
Sbjct: 7   DCQKQFQAAVSVIQNLPKNGSYRPSYEEM-LRFYSYYKQATMGPCLVPRPGFWDPIGRYK 65
Query: 374 WNAWKQLGNMTPEIAMEQYVT 394
           W+AW  LG M+ E AM  Y+T
Sbjct: 66  WDAWNSLGKMSREEAMSAYIT 86

>pdb|2COP|A Chain A, Solution Structure Of Rsgi Ruh-040, An Acbp Domain From Human Cdna Length = 109

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 315 LERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANW 374
           L  LF  A A +      G I     +  + LY  +K   VG C  P+P       +  W
Sbjct: 8   LAELFEKAAAHL-----QGLIQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKW 62
Query: 375 NAWKQLGNMTPEIAMEQYVTILSRSIPG 402
            AWK LG+ +P  AM++Y+ ++ +  PG
Sbjct: 63  EAWKALGDSSPSQAMQEYIAVVKKLDPG 90

>pdb|3FLV|A Chain A, The Crystal Structure Of Human Acyl-Coenzymea Binding Domain Containing 5 Length = 119

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 316 ERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWN 375
           E  F AAV  + +    G      +++ ++ Y  +K AT GPC+  +P       R  W+
Sbjct: 25  ETRFEAAVKVIQSLPKNGSFQPT-NEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWD 83
Query: 376 AWKQLGNMTPEIAMEQYV 393
           AW  LG+MT E AM  YV
Sbjct: 84  AWSSLGDMTKEEAMIAYV 101

>pdb|1HBK|A Chain A, Acyl-Coa Binding Protein From Plasmodium Falciparum Length = 89

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 315 LERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANW 374
           + ++F   V+F+       R  ++ +++K+ LY  +K +T+G C   +P A K   R  +
Sbjct: 2   MAQVFEECVSFING---LPRTINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKY 58
Query: 375 NAWKQLGNMTPEIAMEQYVTILSRSIP 401
            AWK + N+  E A ++YV I+S   P
Sbjct: 59  EAWKSVENLNREDAQKRYVDIVSEIFP 85

>pdb|2FJ9|A Chain A, High Resolution Crystal Structure Of The Unliganded Human Acbp Length = 86

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 346 LYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYV 393
           +YG +K ATVG     +P  L  + +A W+AW +L   + E AM+ Y+
Sbjct: 27  IYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYI 74

>pdb|2CB8|A Chain A, High Resolution Crystal Structure Of Liganded Human L-Acbp Length = 87

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 346 LYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYV 393
           +YG +K ATVG     +P  L  + +A W+AW +L   + E AM+ Y+
Sbjct: 28  IYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYI 75

>pdb|2FDQ|A Chain A, Crystal Structure Of Acbp From Armadillo Harderian Gland Length = 86

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 346 LYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYV 393
           +Y  +K ATVG     +P  L    +A W+AW QL   + E AM+ Y+
Sbjct: 27  IYSHYKQATVGDINTERPGMLDFKGKAKWDAWNQLKGTSKEDAMKSYI 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	443
1hbk_A	89	ACBP, acyl-COA binding protein; fatty acid metabol	2e-22
3flv_A	119	Acyl-COA-binding domain-containing protein 5; lipi	5e-22
1st7_A	86	ACBP, acyl-COA-binding protein; four helix bundle,	5e-21
2wh5_A	106	Acyl-COA-binding domain-containing protein 4; alte	2e-20
2lbb_A	96	Acyl COA binding protein; protein binding, structu	2e-20
3epy_A	89	Acyl-COA-binding domain-containing protein 7; acyl	2e-20
2cb8_A	87	Acyl-COA-binding protein; acyl-coenzyme A binding	2e-19
2cqu_A	116	Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA bi	4e-19
3fp5_A	106	Acyl-COA binding protein; ACBP, cacao disease, fat	4e-19
2cop_A	109	Acyl-coenzyme A binding domain containing 6; acyl	1e-18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09

>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1 Length = 89

 Score = 89.9 bits (223), Expect = 2e-22
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 315 LERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANW 374
           + ++F   V+F+        + +   ++K+ LY  +K +T+G C   +P A K   R  +
Sbjct: 2   MAQVFEECVSFINGLPRTINLPN---ELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKY 58

Query: 375 NAWKQLGNMTPEIAMEQYVTILSRSIPG 402
            AWK + N+  E A ++YV I+S   P 
Sbjct: 59  EAWKSVENLNREDAQKRYVDIVSEIFPY 86

>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens} Length = 119

 Score = 90.1 bits (223), Expect = 5e-22
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 1/100 (1%)

Query: 302 DEDDDWEGIERTELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREP 361
            +        ++  E  F AAV  + +    G      +++ ++ Y  +K AT GPC+  
Sbjct: 11  VDLGTENLYFQSMHETRFEAAVKVIQSLPKNGSFQ-PTNEMMLKFYSFYKQATEGPCKLS 69

Query: 362 QPMALKVSARANWNAWKQLGNMTPEIAMEQYVTILSRSIP 401
           +P       R  W+AW  LG+MT E AM  YV  + + I 
Sbjct: 70  RPGFWDPIGRYKWDAWSSLGDMTKEEAMIAYVEEMKKIIE 109

>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae} Length = 86

 Score = 86.1 bits (213), Expect = 5e-21
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 5/87 (5%)

Query: 315 LERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANW 374
           + +LF      V         +   +D  ++LY L+K ATVG   + +P    +  R  W
Sbjct: 1   VSQLFEEKAKAVNEL-----PTKPSTDELLELYALYKQATVGDNDKEKPGIFNMKDRYKW 55

Query: 375 NAWKQLGNMTPEIAMEQYVTILSRSIP 401
            AW+ L   + E A ++Y+ ++ + I 
Sbjct: 56  EAWENLKGKSQEDAEKEYIALVDQLIA 82

>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens} Length = 106

 Score = 85.1 bits (210), Expect = 2e-20
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 311 ERTELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSA 370
              + ++ F AAV+ + N    G       +  ++ Y  +K AT+GPC  P+P       
Sbjct: 4   PEPDCQKQFQAAVSVIQNLPKNGS-YRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIG 62

Query: 371 RANWNAWKQLGNMTPEIAMEQYVTILSRSIP 401
           R  W+AW  LG M+ E AM  Y+T +     
Sbjct: 63  RYKWDAWNSLGKMSREEAMSAYITEMKLVAQ 93

>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis} Length = 96

 Score = 84.6 bits (209), Expect = 2e-20
 Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 4/92 (4%)

Query: 311 ERTELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSA 370
                   F AAV +V N           +D K+  Y  +K ATVG C +P+P  L++  
Sbjct: 6   HHHMSADDFDAAVKYVSNTTTMM----ASNDDKLCFYKYYKQATVGDCNKPKPGMLQLQE 61

Query: 371 RANWNAWKQLGNMTPEIAMEQYVTILSRSIPG 402
           +  W AW  L  M+ E A E YV +L    P 
Sbjct: 62  KYKWEAWNALRGMSTESAKEAYVKLLDTLAPS 93

>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} Length = 89

 Score = 84.1 bits (208), Expect = 2e-20
 Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 313 TELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARA 372
             L+  F  A   V         +        +LYGL+K A VG      P  L +  +A
Sbjct: 2   MALQADFDRAAEDVRKL-----KARPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKA 56

Query: 373 NWNAWKQLGNMTPEIAMEQYVTILSRSIP 401
            W AW     ++ E A   Y++     I 
Sbjct: 57  KWEAWNLKKGLSTEDATSAYISKAKELIE 85

>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A Length = 87

 Score = 81.8 bits (202), Expect = 2e-19
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 316 ERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWN 375
           +  F  A   V +       +    +  + +YG +K ATVG     +P  L  + +A W+
Sbjct: 3   QAEFEKAAEEVRHL-----KTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWD 57

Query: 376 AWKQLGNMTPEIAMEQYVTILSRSIP 401
           AW +L   + E AM+ Y+  +     
Sbjct: 58  AWNELKGTSKEDAMKAYINKVEELKK 83

>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116

 Score = 81.6 bits (201), Expect = 4e-19
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 5/89 (5%)

Query: 313 TELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARA 372
              ++ F  ++  V            G++VK++LY L+K AT GPC  P+P    +  +A
Sbjct: 14  RASQKDFENSMNQVKLL-----KKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKA 68

Query: 373 NWNAWKQLGNMTPEIAMEQYVTILSRSIP 401
            W+AW  LG++  E A + YV ++S   P
Sbjct: 69  KWDAWNALGSLPKEAARQNYVDLVSSLSP 97

>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} Length = 106

 Score = 81.2 bits (200), Expect = 4e-19
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 1/87 (1%)

Query: 315 LERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANW 374
            +  F  AV  V              D ++  Y   K ATVG     +P  +  + +A W
Sbjct: 4   SKAKFDKAVEIV-QSLPKDGPIKPTQDEQLYFYKYFKQATVGDVNISRPGLMDFTGKAKW 62

Query: 375 NAWKQLGNMTPEIAMEQYVTILSRSIP 401
           +AWK +   + E+A ++YV  L   + 
Sbjct: 63  DAWKSVEGTSKEVAYQKYVEKLLEILK 89

>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109

 Score = 80.1 bits (197), Expect = 1e-18
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 313 TELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARA 372
           + L  LF  A A +        I     +  + LY  +K   VG C  P+P       + 
Sbjct: 6   SGLAELFEKAAAHLQGL-----IQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQ 60

Query: 373 NWNAWKQLGNMTPEIAMEQYVTILSRSIPG 402
            W AWK LG+ +P  AM++Y+ ++ +  PG
Sbjct: 61  KWEAWKALGDSSPSQAMQEYIAVVKKLDPG 90

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 2e-09
 Identities = 54/468 (11%), Positives = 126/468 (26%), Gaps = 174/468 (37%)

Query: 1   MEVFLE-FVLPIAFSLIFSFFLAKLFSLSSSPSTNCDCDLVSGLKPCKHFIQKVVTC-EQ 58
           + VF + FV       +     + L        +  + D +   K       ++      
Sbjct: 22  LSVFEDAFVDNFDCKDVQDMPKSIL--------SKEEIDHIIMSKDAVSGTLRLFWTLLS 73

Query: 59  RGSET---------EKTHGFVAKVVEGGSETQEKILLDDCCGSCDDVKIGDNEV------ 103
           +  E             + F+   ++  +E ++  ++        D    DN+V      
Sbjct: 74  KQEEMVQKFVEEVLRINYKFLMSPIK--TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131

Query: 104 --------LKEAEMERVVEEHFGEFGGGESESNAKFGTG---LTKDEVSVARSEEIEFLE 152
                   L++A +E    ++    G          G+G   +    + V  S +++   
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVL--------GSGKTWVA---LDVCLSYKVQ--- 177

Query: 153 SKCEARKIQKDDG------GKCSTFDCKEMLMDKNNFFESEKMAKIEAESTKTVTRMTES 206
                   + D          C++ +   + M +   ++ +      ++ +  +     S
Sbjct: 178 -------CKMDFKIFWLNLKNCNSPE-TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 207 EETEVSK-------SNC--------DNEVDEANKNQEDGGESSIFN--CKQILV---YRS 246
            + E+ +        NC        + +   A            FN  CK IL+   ++ 
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNA------------FNLSCK-ILLTTRFKQ 276

Query: 247 --NFFESENIAAVKSESAITEVGMARSEEIEVLES--NCDNE----------------IG 286
             +F  +     +  +     + +   E   +L    +C  +                I 
Sbjct: 277 VTDFLSAATTTHISLDH--HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334

Query: 287 ERNRD---------------------------EEDDVK------VVSFDEDDD------- 306
           E  RD                           E  + +       V F            
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAHIPTILLS 393

Query: 307 --WEGIERTELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKI 352
             W  + ++++          V NK +  + S +    K     +  I
Sbjct: 394 LIWFDVIKSDVMV--------VVNKLH--KYSLVEKQPKESTISIPSI 431

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	443
1hbk_A	89	ACBP, acyl-COA binding protein; fatty acid metabol	99.97
2cop_A	109	Acyl-coenzyme A binding domain containing 6; acyl	99.97
1st7_A	86	ACBP, acyl-COA-binding protein; four helix bundle,	99.97
2cqu_A	116	Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA bi	99.97
3epy_A	89	Acyl-COA-binding domain-containing protein 7; acyl	99.96
2wh5_A	106	Acyl-COA-binding domain-containing protein 4; alte	99.96
3flv_A	119	Acyl-COA-binding domain-containing protein 5; lipi	99.96
2cb8_A	87	Acyl-COA-binding protein; acyl-coenzyme A binding	99.96
3fp5_A	106	Acyl-COA binding protein; ACBP, cacao disease, fat	99.96
2lbb_A	96	Acyl COA binding protein; protein binding, structu	99.96
1mix_A	206	Talin; focal adhesion, integrin binding, FERM doma	98.23
1ef1_A	294	Moesin; membrane, FERM domain, tail domain, membra	95.82
4f7g_A	222	Talin-1; alpha-helix bundle, integrin activation,	95.52
1h4r_A	314	Merlin; FERM, neurofibromatosis, NF2, structural p	95.23
3qij_A	296	Protein 4.1; cytoskeleton, structural genomics, st	95.08
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	94.32
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	92.76
3au4_A	555	Myosin-X; protein-protein complex, motor protein c	91.04
4dxa_B	322	KREV interaction trapped protein 1; GTPase, FERM,	88.28
2al6_A	375	Focal adhesion kinase 1; transferase; 2.35A {Gallu	87.25

>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1

Probab=99.97  E-value=2.7e-31  Score=216.16  Aligned_cols=88  Identities=28%  Similarity=0.520  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCCCCCCCcchhhHHHHHHHHHcCCCCHHHHHHHHHH
Q 013405          315 LERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVT  394 (443)
Q Consensus       315 LEEaFeAAVefVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~PKPG~fD~vGRAKWnAWKkLKGMSKEEAMrKYIE  394 (443)
                      |+++|.+|+.+|+.++..   .+|+++++|+|||||||||+|||++++||+||+++|+||+||++++|||+++||++||+
T Consensus         2 l~~~F~~A~~~v~~l~~~---~~~~~~~~L~LYalyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~eeA~~~YI~   78 (89)
T 1hbk_A            2 MAQVFEECVSFINGLPRT---INLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAWKSVENLNREDAQKRYVD   78 (89)
T ss_dssp             HHHHHHHHHHHHHHSCTT---CCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTSHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCCc---CCCCHHHHHHHHHHHHHhhcCCCCCCCCCccCHHhHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            678999999999999742   47899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCcCccc
Q 013405          395 ILSRSIPGCIQ  405 (443)
Q Consensus       395 LVeKLlPgW~e  405 (443)
                      +|++++|.|.+
T Consensus        79 ~v~~l~~~~~~   89 (89)
T 1hbk_A           79 IVSEIFPYWQD   89 (89)
T ss_dssp             HHHHHCTTTTC
T ss_pred             HHHHHcccccC
Confidence            99999999963

>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.97  E-value=3.8e-31  Score=223.32  Aligned_cols=94  Identities=27%  Similarity=0.516  Sum_probs=88.3

Q ss_pred             ccchHHHHHHHHHHHHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCCCCCCCcchhhHHHHHHHHHcCCCCHHHHHH
Q 013405          311 ERTELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAME  390 (443)
Q Consensus       311 essELEEaFeAAVefVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~PKPG~fD~vGRAKWnAWKkLKGMSKEEAMr  390 (443)
                      ++++|+++|.+|+.+|+.++     .+++++++|+|||||||||+|||++++|++||+++|+||+||++|+|||+++||+
T Consensus         4 ~~~~l~~~F~~A~~~vk~l~-----~~p~~~~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~~raKw~AW~~l~gms~eeAm~   78 (109)
T 2cop_A            4 GSSGLAELFEKAAAHLQGLI-----QVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQ   78 (109)
T ss_dssp             CCCCSHHHHHHHHHHHTTST-----TTSCHHHHHHHHHHHHHHHTCSCCSCCCCSSCHHHHHHHHHHHSCTTCCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHcc-----cCCCHHHHHHHHHHHHHhhcCCCCCCCCCccCHHHHHHHHHHHHhcCCCHHHHHH
Confidence            45678899999999999986     3689999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCcCcccCCCC
Q 013405          391 QYVTILSRSIPGCIQDGIG  409 (443)
Q Consensus       391 KYIELVeKLlPgW~e~~~~  409 (443)
                      +||++|++++|.|....+.
T Consensus        79 ~YI~lv~~l~~~~~~~~~~   97 (109)
T 2cop_A           79 EYIAVVKKLDPGWNPQIPE   97 (109)
T ss_dssp             HHHHHHHHHCTTCCCCCCC
T ss_pred             HHHHHHHHHhhhhcccchh
Confidence            9999999999999988653

>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.4e-31  Score=215.21  Aligned_cols=85  Identities=26%  Similarity=0.447  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCCCCCCCcchhhHHHHHHHHHcCCCCHHHHHHHHHH
Q 013405          315 LERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVT  394 (443)
Q Consensus       315 LEEaFeAAVefVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~PKPG~fD~vGRAKWnAWKkLKGMSKEEAMrKYIE  394 (443)
                      |++.|.+|+.+|+.++     .+|+++++|+|||||||||+|||++++|++||+++|+||+||++++|||+++||++||+
T Consensus         1 l~~~F~~A~~~v~~l~-----~~~~~~~~L~lYalyKQAt~Gd~~~~~Pg~~d~~~raKw~AW~~l~gms~eeA~~~YI~   75 (86)
T 1st7_A            1 VSQLFEEKAKAVNELP-----TKPSTDELLELYALYKQATVGDNDKEKPGIFNMKDRYKWEAWENLKGKSQEDAEKEYIA   75 (86)
T ss_dssp             CHHHHHHHHHHHTSCS-----SCCCHHHHHHHHHHHHHHHHCSCCCCCCCSSCHHHHHHHHHHHTTTTTHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcc-----CCcCHHHHHHHHHHHHHHhhCCCCCCCCCccCHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4689999999999997     36899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCcCcc
Q 013405          395 ILSRSIPGCI  404 (443)
Q Consensus       395 LVeKLlPgW~  404 (443)
                      +|++++|.|.
T Consensus        76 ~v~~l~~~~~   85 (86)
T 1st7_A           76 LVDQLIAKYS   85 (86)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHhhhhc
Confidence            9999999995

>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.97  E-value=2.5e-30  Score=221.12  Aligned_cols=93  Identities=30%  Similarity=0.525  Sum_probs=87.2

Q ss_pred             cchHHHHHHHHHHHHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCCCCCCCcchhhHHHHHHHHHcCCCCHHHHHHH
Q 013405          312 RTELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQ  391 (443)
Q Consensus       312 ssELEEaFeAAVefVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~PKPG~fD~vGRAKWnAWKkLKGMSKEEAMrK  391 (443)
                      +.+|+++|..|+.+|+.++     .+|+++++|+|||||||||+|||+.++|++||+++|+||+||++|+|||+++||++
T Consensus        13 m~~~~~~F~~A~~~vk~l~-----~~p~~~~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~graKw~AW~~l~gms~eeAm~~   87 (116)
T 2cqu_A           13 MRASQKDFENSMNQVKLLK-----KDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQN   87 (116)
T ss_dssp             CCCCHHHHHHHHHHHHHCC-----SCCCHHHHHHHHHHHTTTTTCSCCSCCCCTTCHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcc-----CCCCHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            4457999999999999997     36899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCcCcccCCCC
Q 013405          392 YVTILSRSIPGCIQDGIG  409 (443)
Q Consensus       392 YIELVeKLlPgW~e~~~~  409 (443)
                      ||++|++++|.|.+....
T Consensus        88 YI~lv~~l~~~~~~~~~~  105 (116)
T 2cqu_A           88 YVDLVSSLSPSLESSSQV  105 (116)
T ss_dssp             HHHHHHHHCSCCCCCCCC
T ss_pred             HHHHHHHHcccccccccc
Confidence            999999999999987543

>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1

Probab=99.96  E-value=1.7e-30  Score=212.49  Aligned_cols=86  Identities=26%  Similarity=0.317  Sum_probs=82.1

Q ss_pred             hHHHHHHHHHHHHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCCCCCCCcchhhHHHHHHHHHcCCCCHHHHHHHHH
Q 013405          314 ELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYV  393 (443)
Q Consensus       314 ELEEaFeAAVefVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~PKPG~fD~vGRAKWnAWKkLKGMSKEEAMrKYI  393 (443)
                      +|+++|.+|+.+|+.++     .+|+++++|+|||||||||+|||+.++|++||+++|+||+||++++|||+++||++||
T Consensus         3 ~L~~~F~~A~~~vk~l~-----~~p~~~~~L~lYalyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~g~s~eeA~~~Yi   77 (89)
T 3epy_A            3 ALQADFDRAAEDVRKLK-----ARPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKAKWEAWNLKKGLSTEDATSAYI   77 (89)
T ss_dssp             HHHHHHHHHHHHGGGCS-----SCCCHHHHHHHHHHHHHHHTCSCCSCCTTTTCHHHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHHHHHHhhCCCCCCCCcccchHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence            48999999999999996     3689999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCcCcc
Q 013405          394 TILSRSIPGCI  404 (443)
Q Consensus       394 ELVeKLlPgW~  404 (443)
                      +++++++|.|.
T Consensus        78 ~~v~~l~~ky~   88 (89)
T 3epy_A           78 SKAKELIEKYG   88 (89)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHhhhhc
Confidence            99999999873

>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}

Probab=99.96  E-value=1.2e-30  Score=219.79  Aligned_cols=101  Identities=29%  Similarity=0.487  Sum_probs=86.1

Q ss_pred             ccchHHHHHHHHHHHHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCCCCCCCcchhhHHHHHHHHHcCCCCHHHHHH
Q 013405          311 ERTELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAME  390 (443)
Q Consensus       311 essELEEaFeAAVefVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~PKPG~fD~vGRAKWnAWKkLKGMSKEEAMr  390 (443)
                      +.++|+++|.+|+.+|+.++..|+. +|+++++|+|||||||||+|||+.++|++||+++|+||+||++++|||+++||+
T Consensus         4 ~~~~l~~~F~~A~~~vk~l~~~g~~-~ps~e~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~eeA~~   82 (106)
T 2wh5_A            4 PEPDCQKQFQAAVSVIQNLPKNGSY-RPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMS   82 (106)
T ss_dssp             -----CHHHHHHHHHHHHSCSSCSC-CCCHHHHHHHHHHHHHHHHCSCCSCCCCTTCHHHHHHHHHHHTTTTCCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhccccCCC-CCCHHHHHHHHHHHhhhccCCCCCCCCCcccHHHHHHHHHHHHhcCCCHHHHHH
Confidence            4456889999999999999876653 799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCcCcccCCCCCCC
Q 013405          391 QYVTILSRSIPGCIQDGIGGDI  412 (443)
Q Consensus       391 KYIELVeKLlPgW~e~~~~~~~  412 (443)
                      +||+++++++|.+.+.-|...+
T Consensus        83 ~YI~~v~~l~~k~~~t~~~~~~  104 (106)
T 2wh5_A           83 AYITEMKLVAQKVIDTVPLGEV  104 (106)
T ss_dssp             HHHHHHHHHHHHHHTC------
T ss_pred             HHHHHHHHHHHHhhccCCchhc
Confidence            9999999999999887766544

>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens}

Probab=99.96  E-value=1.9e-30  Score=223.32  Aligned_cols=105  Identities=28%  Similarity=0.369  Sum_probs=86.4

Q ss_pred             cccCCCCCccccccchHHHHHHHHHHHHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCCCCCCCcchhhHHHHHHHH
Q 013405          299 VSFDEDDDWEGIERTELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWK  378 (443)
Q Consensus       299 ~s~edtdDwEg~essELEEaFeAAVefVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~PKPG~fD~vGRAKWnAWK  378 (443)
                      ++..|.+...-..+++|+++|.+|+.+|+.++..|++ +|+++++|+|||||||||+|||+.++|++||+++|+||+||+
T Consensus         8 ~~~~~~~~~~~~~~~dLe~~F~~A~~~Vk~l~~~g~~-~ps~d~~L~LYaLyKQAT~Gd~~~~~Pg~~d~~graKw~AW~   86 (119)
T 3flv_A            8 SSGVDLGTENLYFQSMHETRFEAAVKVIQSLPKNGSF-QPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDAWS   86 (119)
T ss_dssp             --------------CHHHHHHHHHHHHHHHHHHHSSC-CCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHHHHHHHHHH
T ss_pred             cccccccchhhhhhhHHHHHHHHHHHHHHhCcccCCC-CCCHHHHHHHHHHHHHHhcCCCCCCCCCccCHHHHHHHHHHH
Confidence            3444555555567889999999999999999876653 789999999999999999999999999999999999999999


Q ss_pred             HcCCCCHHHHHHHHHHHHHhhCcCcc
Q 013405          379 QLGNMTPEIAMEQYVTILSRSIPGCI  404 (443)
Q Consensus       379 kLKGMSKEEAMrKYIELVeKLlPgW~  404 (443)
                      +++|||+++||++||++++++++...
T Consensus        87 ~l~gmS~eeAm~~YI~~v~~l~~~~~  112 (119)
T 3flv_A           87 SLGDMTKEEAMIAYVEEMKKIIETMP  112 (119)
T ss_dssp             HTTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HccCCCHHHHHHHHHHHHHHHHhhCC
Confidence            99999999999999999999988764

>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A

Probab=99.96  E-value=7.4e-30  Score=207.48  Aligned_cols=84  Identities=25%  Similarity=0.370  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCCCCCCCcchhhHHHHHHHHHcCCCCHHHHHHHHHHH
Q 013405          316 ERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVTI  395 (443)
Q Consensus       316 EEaFeAAVefVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~PKPG~fD~vGRAKWnAWKkLKGMSKEEAMrKYIEL  395 (443)
                      +++|.+|+.+|+.++     .+|+++++|+|||||||||+|||+.++|++||+++|+||+||++++|||+++||++||++
T Consensus         3 ~~~F~~A~~~vk~l~-----~~~~~~~~L~lYalyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~eeA~~~Yi~~   77 (87)
T 2cb8_A            3 QAEFEKAAEEVRHLK-----TKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINK   77 (87)
T ss_dssp             HHHHHHHHHHGGGCS-----SCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHHHHHHHHHHTTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcc-----CCcCHHHHHHHHHHHHhhhhCCCCCCCCCcccHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            579999999999997     368999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCcCcc
Q 013405          396 LSRSIPGCI  404 (443)
Q Consensus       396 VeKLlPgW~  404 (443)
                      +++++|.|.
T Consensus        78 v~~l~~~~~   86 (87)
T 2cb8_A           78 VEELKKKYG   86 (87)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999999884

>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0

Probab=99.96  E-value=1.6e-29  Score=213.12  Aligned_cols=87  Identities=28%  Similarity=0.456  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCCCCCCCcchhhHHHHHHHHHcCCCCHHHHHHHHHH
Q 013405          315 LERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVT  394 (443)
Q Consensus       315 LEEaFeAAVefVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~PKPG~fD~vGRAKWnAWKkLKGMSKEEAMrKYIE  394 (443)
                      ++++|.+|+.+|+.+++.|+. +|+++++|+|||||||||+|||+.++|++||+++|+||+||++++|||+++||++||+
T Consensus         4 ~~~~F~~A~~~vk~l~~~g~~-~ps~~~~L~LYalyKQAt~Gd~~~~~Pg~~d~~~raKw~AW~~l~gmS~eeA~~~YI~   82 (106)
T 3fp5_A            4 SKAKFDKAVEIVQSLPKDGPI-KPTQDEQLYFYKYFKQATVGDVNISRPGLMDFTGKAKWDAWKSVEGTSKEVAYQKYVE   82 (106)
T ss_dssp             CHHHHHHHHHHHHHCCSSSSS-CCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHHHHHHHHHHTTTTCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcccccCC-CCCHHHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence            478999999999999877653 7999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCcC
Q 013405          395 ILSRSIPG  402 (443)
Q Consensus       395 LVeKLlPg  402 (443)
                      +++++++.
T Consensus        83 ~v~~l~~~   90 (106)
T 3fp5_A           83 KLLEILKK   90 (106)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhcc
Confidence            99999987

>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}

Probab=99.96  E-value=1.8e-29  Score=209.89  Aligned_cols=85  Identities=35%  Similarity=0.594  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCCCCCCCcchhhHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 013405          317 RLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVTIL  396 (443)
Q Consensus       317 EaFeAAVefVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~PKPG~fD~vGRAKWnAWKkLKGMSKEEAMrKYIELV  396 (443)
                      .+|.+|+..|+++++    .+|+++++|+|||||||||+|||++++||+||+++|+||+||++++|||+++||++||++|
T Consensus        12 ~~F~~A~~~vk~l~~----~~ps~~~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~graKw~AW~~l~gmS~eeAm~~YI~lv   87 (96)
T 2lbb_A           12 DDFDAAVKYVSNTTT----MMASNDDKLCFYKYYKQATVGDCNKPKPGMLQLQEKYKWEAWNALRGMSTESAKEAYVKLL   87 (96)
T ss_dssp             STHHHHHHHHHHCCC----SCCCTTTTTHHHHHHHHTTTSSCCCCCCCSSCSHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCC----CCCCHHHHHHHHHHHHHHhcCCCCCCCCCcccHHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            379999999999973    2689999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCcCccc
Q 013405          397 SRSIPGCIQ  405 (443)
Q Consensus       397 eKLlPgW~e  405 (443)
                      ++++|.|.+
T Consensus        88 ~~l~~~~~~   96 (96)
T 2lbb_A           88 DTLAPSWRN   96 (96)
T ss_dssp             HHHCGGGTC
T ss_pred             HHHhchhcC
Confidence            999999963

>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B

Probab=98.23  E-value=4.9e-06  Score=72.16  Aligned_cols=84  Identities=25%  Similarity=0.263  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCCC--CCCCcchh------------hHHHHHHHHHc
Q 013405          315 LERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREP--QPMALKVS------------ARANWNAWKQL  380 (443)
Q Consensus       315 LEEaFeAAVefVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~P--KPG~fD~v------------GRAKWnAWKkL  380 (443)
                      +.--|.++..-|-.    |.+ ..+.++.+.|.||..||..||++..  .|+.++..            .+.-+++|+++
T Consensus        18 ~~l~y~Q~~~dil~----g~~-~~~~~~a~~Laal~~qa~~Gd~~~~~~~~~~~~~~~~lP~~~~~~~~~~~i~~~~~~~   92 (206)
T 1mix_A           18 LNLLYVQARDDILN----GSH-PVSFDKACEFAGYQCQIQFGPHNEQKHKPGFLELKDFLPKEYIKQKGERKIFMAHKNC   92 (206)
T ss_dssp             HHHHHHHHHHHHHT----TSS-CCCHHHHHHHHHHHHHHHHCSCCTTTSCTTCSCGGGTSCGGGSTTCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHC----Ccc-ccCHHHHHHHHHHhhhheecCCCcccccCCccchHhhCCHHHhhcccHHHHHHHHHHc
Confidence            34456666665543    332 6789999999999999999999863  46554433            67889999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhCcCcc
Q 013405          381 GNMTPEIAMEQYVTILSRSIPGCI  404 (443)
Q Consensus       381 KGMSKEEAMrKYIELVeKLlPgW~  404 (443)
                      +|||+.+||.+|++++.++ |.|.
T Consensus        93 ~g~s~~~A~~~yL~~~~~l-~~yG  115 (206)
T 1mix_A           93 GNMSEIEAKVRYVKLARSL-KTYG  115 (206)
T ss_dssp             TTCCHHHHHHHHHHHHHHS-TTTT
T ss_pred             cCCCHHHHHHHHHHHHHhC-cccC
Confidence            9999999999999999865 5554

>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A

Probab=95.82  E-value=0.029  Score=51.34  Aligned_cols=84  Identities=15%  Similarity=0.105  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCCC--CCCCcc--------hhh-----HHHH-----H
Q 013405          316 ERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREP--QPMALK--------VSA-----RANW-----N  375 (443)
Q Consensus       316 EEaFeAAVefVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~P--KPG~fD--------~vG-----RAKW-----n  375 (443)
                      .--|.++..-|-.    |.+ ..+.++-+.|-||--||..||++..  .|+.++        +..     ...|     .
T Consensus        97 ~l~y~Q~~~dil~----g~~-~~~~e~a~~Laal~~q~~~Gd~~~~~~~~~~l~~~~~lP~~~~~~~~~~~~~~~~~I~~  171 (294)
T 1ef1_A           97 RLFFLQVKEGILN----DDI-YCPPETAVLLASYAVQSKYGDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQV  171 (294)
T ss_dssp             HHHHHHHHHHHHT----TSS-CCCHHHHHHHHHHHHHHHHCSCCTTTSCTTTTTTCCCSCHHHHHHBCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc----Ccc-cCCHHHHHHHHHHHHHHHhCCCCccccChhhccccccCCHHHHhhcCCCHHHHHHHHHH
Confidence            3345555554443    333 5788999999999999999999763  344321        111     2234     6


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHhhCcCccc
Q 013405          376 AWKQLGNMTPEIAMEQYVTILSRSIPGCIQ  405 (443)
Q Consensus       376 AWKkLKGMSKEEAMrKYIELVeKLlPgW~e  405 (443)
                      .|++++|||+.+|+.+|++++.+ +|.|..
T Consensus       172 ~~~~~~g~s~~~A~~~yL~~~~~-lp~yG~  200 (294)
T 1ef1_A          172 WHEEHRGMLREDAVLEYLKIAQD-LEMYGV  200 (294)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHTT-STTTTC
T ss_pred             HHHHccCCCHHHHHHHHHHHHcc-cCccCc
Confidence            89999999999999999999986 566643

>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus}

Probab=95.52  E-value=0.023  Score=50.61  Aligned_cols=83  Identities=23%  Similarity=0.246  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCCC--CCCCcc-----------hh-hHHHHHHHHHc
Q 013405          315 LERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREP--QPMALK-----------VS-ARANWNAWKQL  380 (443)
Q Consensus       315 LEEaFeAAVefVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~P--KPG~fD-----------~v-GRAKWnAWKkL  380 (443)
                      +.--|..+..-|-.    |.+ ..+.++-+.|-||--||..||++..  .|+.+.           -. .+.=...|+++
T Consensus        29 l~l~ylQ~~~dil~----G~~-~~~~e~a~~LAal~~Qae~Gd~~~~~~~~~~~~l~~~lP~~~~~~~~~~~I~~~h~~~  103 (222)
T 4f7g_A           29 LNLLYVQARDDILN----GSH-PVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKEYVKQKGERKIFQAHKNC  103 (222)
T ss_dssp             HHHHHHHHHHHHHT----TSS-CCCHHHHHHHHHHHHHHHHCSCCTTTSCSSCSCGGGTSCGGGGGGCCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhC----Ccc-cCCHHHHHHHHHHHHHHHHCCCCchhcccCccchhhccCHHHHhhhhHHHHHHHHHhc
Confidence            44445555554432    332 5788999999999999999998763  232211           11 11224689999


Q ss_pred             CCCCHHHHHHHHHHHHHhhCcCc
Q 013405          381 GNMTPEIAMEQYVTILSRSIPGC  403 (443)
Q Consensus       381 KGMSKEEAMrKYIELVeKLlPgW  403 (443)
                      +|||+.+|+.+|++++.++ |.|
T Consensus       104 ~g~s~~eA~~~yL~~~~~l-~~y  125 (222)
T 4f7g_A          104 GQMSEIEAKVRYVKLARSL-KTY  125 (222)
T ss_dssp             TTCCHHHHHHHHHHHHHTS-TTT
T ss_pred             cCCCHHHHHHHHHHHHhhc-ccc
Confidence            9999999999999999876 544

>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A

Probab=95.23  E-value=0.038  Score=51.25  Aligned_cols=81  Identities=12%  Similarity=0.079  Sum_probs=56.9

Q ss_pred             HHHHHHHHHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCCC--CCCCcch--------hh-----HHHH-----HHH
Q 013405          318 LFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREP--QPMALKV--------SA-----RANW-----NAW  377 (443)
Q Consensus       318 aFeAAVefVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~P--KPG~fD~--------vG-----RAKW-----nAW  377 (443)
                      -|.++..-|-.    |.+ ..+.++-++|-||--||..||++..  .|+.++.        ..     ...|     ..|
T Consensus       119 ~y~Q~~~dil~----g~~-~~~~e~a~~Laal~~Qa~~Gd~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~I~~~~  193 (314)
T 1h4r_A          119 FFLQVKKQILD----EKI-YCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWY  193 (314)
T ss_dssp             HHHHHHHHHHT----TSS-CCCHHHHHHHHHHHHHHHHCSCCTTTSCTTTTTTCCCSCHHHHTTSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC----CCc-cCCHHHHHHHHHHHHHHHHCCCCccccchhhcchhhcCCHHHHhhccCCHHHHHHHHHHHH
Confidence            44555544432    333 5789999999999999999999763  3432211        00     1233     689


Q ss_pred             HHcCCCCHHHHHHHHHHHHHhhCcCcc
Q 013405          378 KQLGNMTPEIAMEQYVTILSRSIPGCI  404 (443)
Q Consensus       378 KkLKGMSKEEAMrKYIELVeKLlPgW~  404 (443)
                      +++.|||+.+|+.+|++++.+ +|.|.
T Consensus       194 ~~~~g~s~~eA~~~yL~~~~~-lp~yG  219 (314)
T 1h4r_A          194 AEHRGRARDEAEMEYLKIAQD-LEMYG  219 (314)
T ss_dssp             HTTTTCCHHHHHHHHHHHHTT-STTTT
T ss_pred             HHcCCCCHHHHHHHHHHHHhc-cCccC
Confidence            999999999999999999976 46553

>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A

Probab=95.08  E-value=0.054  Score=50.62  Aligned_cols=80  Identities=11%  Similarity=-0.016  Sum_probs=56.1

Q ss_pred             HHHHHHHHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCCC--CCCCcc-----h-----hhHHHHHHHHHcCCCCHH
Q 013405          319 FGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREP--QPMALK-----V-----SARANWNAWKQLGNMTPE  386 (443)
Q Consensus       319 FeAAVefVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~P--KPG~fD-----~-----vGRAKWnAWKkLKGMSKE  386 (443)
                      |.++..-|-.    |.+ ..+.++-+.|-||--||..||++..  .|+.+.     +     ..+.=..+|+++.|||+.
T Consensus       114 ylQ~~~dil~----G~~-~c~~e~a~~LAAl~~Qae~Gd~~~~~~~~~yl~~~~~~P~~~~~~~~~I~~~h~~~~g~s~~  188 (296)
T 3qij_A          114 CLQLRQDIVA----GRL-PCSFATLALLGSYTIQSELGDYDPELHGVDYVSDFKLAPNQTKELEEKVMELHKSYRSMTPA  188 (296)
T ss_dssp             HHHHHHHHHH----TSS-CCCHHHHHHHHHHHHHHHHCSCCHHHHTTCCCTTSCCSSSCCHHHHHHHHHHHHTCCSCCHH
T ss_pred             HHHHHHHHHc----CCC-CCCHHHHHHHHHHHHHHhcCCCCccccchhhCcHhhcCCcCHHHHHHHHHHHHHHccCCCHH
Confidence            4555544432    332 5788999999999999999998742  222221     1     122223679999999999


Q ss_pred             HHHHHHHHHHHhhCcCcc
Q 013405          387 IAMEQYVTILSRSIPGCI  404 (443)
Q Consensus       387 EAMrKYIELVeKLlPgW~  404 (443)
                      +|+..|++++.+ +|.|.
T Consensus       189 eA~~~yL~~a~~-l~~yG  205 (296)
T 3qij_A          189 QADLEFLENAKK-LSMYG  205 (296)
T ss_dssp             HHHHHHHHHHTT-STTTT
T ss_pred             HHHHHHHHHHhc-ccccC
Confidence            999999999988 56664

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=94.32  E-value=0.19  Score=47.79  Aligned_cols=83  Identities=22%  Similarity=0.225  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCCCC--CCCcch-----------h-hHHHHHHHHHcC
Q 013405          316 ERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQ--PMALKV-----------S-ARANWNAWKQLG  381 (443)
Q Consensus       316 EEaFeAAVefVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~PK--PG~fD~-----------v-GRAKWnAWKkLK  381 (443)
                      .--|.++..-+-.    |.+ ..+.++-+.|-||.-||..||++...  |+.+..           . .+.=..+|+++.
T Consensus       184 ~l~y~Q~~~dil~----G~~-~c~~e~a~~LAAl~~qae~Gd~~~~~~~~~~~~l~~~lP~~~~~~~~e~~I~~~~~~~~  258 (371)
T 3ivf_A          184 NLLYVQARDDILN----GSH-PVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKEYVKQKGERKIFQAHKNCG  258 (371)
T ss_dssp             HHHHHHHHHHHHT----SSS-CCCHHHHHHHHHHHHHHHHCSCCTTTSCTTCSCGGGTSCGGGTTSCHHHHHHHHHHHTT
T ss_pred             HHHHHHhhHHHhC----cee-ecCHHHHHHHHHHHHHHHhCCCChhhcccchhcccccCCHHHhCchHHHHHHHHHHHcc
Confidence            3345555554443    332 57889999999999999999997632  322110           1 122246899999


Q ss_pred             CCCHHHHHHHHHHHHHhhCcCcc
Q 013405          382 NMTPEIAMEQYVTILSRSIPGCI  404 (443)
Q Consensus       382 GMSKEEAMrKYIELVeKLlPgW~  404 (443)
                      |||+.+|+.+|++++.++ |.|.
T Consensus       259 g~s~~eA~~~yL~~~~~l-~~yG  280 (371)
T 3ivf_A          259 QMSEIEAKVRYVKLARSL-KTYG  280 (371)
T ss_dssp             TCCHHHHHHHHHHHHHHS-TTTT
T ss_pred             CCCHHHHHHHHHHHHhcc-cccC
Confidence            999999999999999865 5554

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=92.76  E-value=0.19  Score=51.98  Aligned_cols=83  Identities=19%  Similarity=0.230  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCCC--CCCCcc---h-----hh-----HHHH-----HH
Q 013405          317 RLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREP--QPMALK---V-----SA-----RANW-----NA  376 (443)
Q Consensus       317 EaFeAAVefVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~P--KPG~fD---~-----vG-----RAKW-----nA  376 (443)
                      --|..+..-|-.    |.+ ..+.++-+.|-||--||..||++..  .|+.++   +     ..     ...|     ..
T Consensus       101 LlYlQvk~dIl~----G~l-~c~~e~a~~LAAL~lQae~GDy~~~~~~~~yl~~~~~lP~~vl~~~~~s~e~~~~~I~~~  175 (575)
T 2i1j_A          101 LFYLQVKNAILS----DEI-YCPPETSVLLASYAVQARHGDHNPAVHGPGFLANDRLLPQRVTDQHKMSREEWEQSITNW  175 (575)
T ss_dssp             HHHHHHHHHHHT----TSS-CCCHHHHHHHHHHHHHHHHCSCCTTTCCTTTTTTCCCSCHHHHHTBCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC----CCC-CCCHHHHHHHHHHHHHHHhcCCChhhcccccccccccCCHHHHhhcCCCHHHHHHHHHHH
Confidence            345555554432    333 6788999999999999999999763  344331   1     11     2334     67


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHhhCcCccc
Q 013405          377 WKQLGNMTPEIAMEQYVTILSRSIPGCIQ  405 (443)
Q Consensus       377 WKkLKGMSKEEAMrKYIELVeKLlPgW~e  405 (443)
                      |+++.|||+.+|+..|++++.+ +|.|..
T Consensus       176 hk~l~G~s~~eA~~~yL~~a~~-lp~YG~  203 (575)
T 2i1j_A          176 WQEHRGMLREDAMMEYLKIAQD-LEMYGV  203 (575)
T ss_dssp             HGGGTTCCHHHHHHHHHHHHTT-STTTTC
T ss_pred             HHHccCCCHHHHHHHHHHHHHh-ccccCC
Confidence            9999999999999999999986 466643

>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A

Probab=91.04  E-value=0.7  Score=46.45  Aligned_cols=85  Identities=21%  Similarity=0.309  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCCCC--CCCcc------hhh----------------
Q 013405          315 LERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQ--PMALK------VSA----------------  370 (443)
Q Consensus       315 LEEaFeAAVefVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~PK--PG~fD------~vG----------------  370 (443)
                      +.--|..+..-|-.    |.+ ..+.++-+.|-||.-|+..||++...  +..-+      +..                
T Consensus       321 ~~lly~Q~~~dil~----G~~-~~~~e~a~~LAAl~lQ~~~GD~~~~~~~~~l~~~lP~~~l~~~~~~~~k~~s~~~~~l  395 (555)
T 3au4_A          321 FAFMFEQAHEAVIH----GHH-PAPEENLQVLAALRLQYLQGDYTLHAAIPPLEEVYSLQRLKARISQSTKTFSFRTGSV  395 (555)
T ss_dssp             HHHHHHHHHHHHHT----TCS-CCCHHHHHHHHHHHHHHHHCSCCTTCCCCCGGGTSCCHHHHHHHHHTTCCEECCTTSC
T ss_pred             HHhhHHHHHHHHHC----CCC-CCCHHHHHHHHHHHHHHHcCCCccccchhhhhhhCCHHHhhhhhcccccccccccccc
Confidence            34456666665543    332 57889999999999999999987632  11100      000                


Q ss_pred             ----------HHHH-------------HHHHHcCCCCHHHHHHHHHHHHHhhCcCccc
Q 013405          371 ----------RANW-------------NAWKQLGNMTPEIAMEQYVTILSRSIPGCIQ  405 (443)
Q Consensus       371 ----------RAKW-------------nAWKkLKGMSKEEAMrKYIELVeKLlPgW~e  405 (443)
                                ...|             ..|+++.|||+.+|+.+|++++.++ |.|..
T Consensus       396 ~~~~~~~~~~~~~W~~~~~~~~~~~I~~~~~~~~g~s~~eA~~~yL~~~~~l-p~yG~  452 (555)
T 3au4_A          396 VRQKVEEEQMLDMWIKEEVSSARASIIDKWRKFQGMNQEQAMAKYMALIKEW-PGYGS  452 (555)
T ss_dssp             CEECCCCHHHHHHHTHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHTTS-TTTTC
T ss_pred             ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-CCcCc
Confidence                      1122             5788999999999999999999876 66543

>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A

Probab=88.28  E-value=0.76  Score=43.11  Aligned_cols=81  Identities=14%  Similarity=0.050  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCC--CCCCCcc---h---------------hhHHHHHH
Q 013405          317 RLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCRE--PQPMALK---V---------------SARANWNA  376 (443)
Q Consensus       317 EaFeAAVefVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~--PKPG~fD---~---------------vGRAKWnA  376 (443)
                      --|.++..-|-..    .+ ..+.++-+.|-||--||..||++.  ..|+.+.   +               -...=..+
T Consensus       116 l~y~Q~~~dil~G----~~-~c~~e~a~~LAAl~~q~e~Gd~~~~~~~~~~l~~~~l~~~lP~~~~~~~~~~~~~~I~~~  190 (322)
T 4dxa_B          116 ILFDEARYNLLKG----FY-TAPDAKLITLASLLLQIVYGNYESKKHKQGFLNEENLKSIVPVTKLKSKAPHWTNRILHE  190 (322)
T ss_dssp             HHHHHHHHHHHHT----CC-CCCHHHHHHHHHHHHHHHHCSCCHHHHSSSCSCHHHHTTTSCTTTTTTTGGGSHHHHHHH
T ss_pred             HHHHHHHHHHHCC----cc-cCCHHHHHHHHHHHHHHHhCCCCcccccccccchhhhhhhCCHHHHhcCHHHHHHHHHHH
Confidence            3456666555432    22 578899999999999999999864  2333321   0               01222478


Q ss_pred             HHHc---CCCCHH--HHHHHHHHHHHhhCcCc
Q 013405          377 WKQL---GNMTPE--IAMEQYVTILSRSIPGC  403 (443)
Q Consensus       377 WKkL---KGMSKE--EAMrKYIELVeKLlPgW  403 (443)
                      |+++   .|||++  +|+.+|++++.++ |.|
T Consensus       191 h~~~~~~~g~s~~~a~a~~~yL~~~~~l-p~y  221 (322)
T 4dxa_B          191 YKNLSTSEGVSKEMHHLQRMFLQNCWEI-PTY  221 (322)
T ss_dssp             HHHHHC--CCCCCHHHHHHHHHHHHHTS-TTT
T ss_pred             HHhcccccCCChhHHHHHHHHHHHHhcC-CCc
Confidence            9999   999975  4699999999854 544

>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A

Probab=87.25  E-value=0.74  Score=44.36  Aligned_cols=83  Identities=13%  Similarity=0.206  Sum_probs=55.0

Q ss_pred             HHHHHHHHHH-HHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCCCCCC----------------Cc--ch-------
Q 013405          315 LERLFGAAVA-FVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPM----------------AL--KV-------  368 (443)
Q Consensus       315 LEEaFeAAVe-fVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~PKPG----------------~f--D~-------  368 (443)
                      +.--|.++.. +++..     +...+.+.-+.|-||--|+..||++...+.                ++  ++       
T Consensus       114 ~~~~y~Q~r~Dil~g~-----~~~~~~e~al~LAaL~~q~~~gD~~~~~~~~k~~~~~l~k~~~l~~flP~~~~~~~~~~  188 (375)
T 2al6_A          114 LNFFYQQVKNDYMLEI-----ADQVDQEIALKLGCLEIRRSYGEMRGNALEKKSNYEVLEKDVGLRRFFPKSLLDSVKAK  188 (375)
T ss_dssp             HHHHHHHHHHHHHHHT-----TTTSCHHHHHHHHHHHHHHHTTTSCTTGGGSHHHHHHHHHTTCGGGTSCHHHHHSSCHH
T ss_pred             HHHHHHHHHHHHHcCC-----CccCCHHHHHHHHHHHHHHHhhhccchhhcccCCHHHhhhcccHHHhCCHHHHHHhChH
Confidence            3445555544 44432     124688999999999999999998532110                00  01       


Q ss_pred             -hhHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCcCc
Q 013405          369 -SARANWNAWKQLGNMTPEIAMEQYVTILSRSIPGC  403 (443)
Q Consensus       369 -vGRAKWnAWKkLKGMSKEEAMrKYIELVeKLlPgW  403 (443)
                       ..+.=.+.|+++.|||+++||.+|++++.+ +|.|
T Consensus       189 ~~~k~I~~~~k~~~g~s~~eAk~~yL~~~~~-l~~y  223 (375)
T 2al6_A          189 TLRKLIQQTFRQFANLNREESILKFFEILSP-VYRF  223 (375)
T ss_dssp             HHHHHHHHHHHTTTTCCHHHHHHHHHHHHTT-TCCC
T ss_pred             HHHHHHHHHHHHhhCCCHHHHHHHHHHHHhh-cccC
Confidence             011113778899999999999999999998 4544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	443
d1hbka_	89	a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium	3e-23
d1hb6a_	86	a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos t	4e-18

>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium falciparum [TaxId: 5833]} Length = 89

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Acyl-CoA binding protein
family: Acyl-CoA binding protein
domain: Acyl-CoA binding protein
species: Plasmodium falciparum [TaxId: 5833]

 Score = 91.0 bits (226), Expect = 3e-23
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 315 LERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANW 374
           + ++F   V+F+        + +   ++K+ LY  +K +T+G C   +P A K   R  +
Sbjct: 2   MAQVFEECVSFINGLPRTINLPN---ELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKY 58

Query: 375 NAWKQLGNMTPEIAMEQYVTILSRSIPG 402
            AWK + N+  E A ++YV I+S   P 
Sbjct: 59  EAWKSVENLNREDAQKRYVDIVSEIFPY 86

>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 9913]} Length = 86

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Acyl-CoA binding protein
family: Acyl-CoA binding protein
domain: Acyl-CoA binding protein
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.8 bits (189), Expect = 4e-18
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 319 FGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWK 378
           F  A   V +       +    +  + +Y  +K ATVG     +P  L    +A W+AW 
Sbjct: 5   FDKAAEEVKHL-----KTKPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWN 59

Query: 379 QLGNMTPEIAMEQYVTILSRSIP 401
           +L   + E AM+ Y+  +     
Sbjct: 60  ELKGTSKEDAMKAYIDKVEELKK 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	443
d1hbka_	89	Acyl-CoA binding protein {Plasmodium falciparum [T	99.97
d1hb6a_	86	Acyl-CoA binding protein {Cow (Bos taurus) [TaxId:	99.95
d1h4ra1	111	Merlin {Human (Homo sapiens) [TaxId: 9606]}	97.57
d1mixa1	114	Talin {Chicken (Gallus gallus) [TaxId: 9031]}	97.45
d1gg3a1	106	Erythroid membrane protein 4.1R {Human (Homo sapie	97.39
d1ef1a1	111	Moesin {Human (Homo sapiens) [TaxId: 9606]}	97.38
d2al6a1	123	Focal adhesion kinase 1 {Chicken (Gallus gallus) [	95.46

>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Acyl-CoA binding protein
family: Acyl-CoA binding protein
domain: Acyl-CoA binding protein
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.97  E-value=1.3e-30  Score=211.49  Aligned_cols=88  Identities=28%  Similarity=0.520  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCCCCCCCcchhhHHHHHHHHHcCCCCHHHHHHHHHH
Q 013405          315 LERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVT  394 (443)
Q Consensus       315 LEEaFeAAVefVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~PKPG~fD~vGRAKWnAWKkLKGMSKEEAMrKYIE  394 (443)
                      |++.|..|+.+|+++++.   .++|++++|+|||||||||+|||+.++|++|++++|+||+||++++|||+++||++||+
T Consensus         2 L~~~F~~A~~~v~~~~~~---~~~~~~~~L~lY~lyKQat~G~~~~~~P~~~~~~~~~Kw~AW~~l~gms~~eA~~~Yi~   78 (89)
T d1hbka_           2 MAQVFEECVSFINGLPRT---INLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAWKSVENLNREDAQKRYVD   78 (89)
T ss_dssp             HHHHHHHHHHHHHHSCTT---CCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTSHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCC---CCCCHHHHHHHHHHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            788999999999998754   36899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCcCccc
Q 013405          395 ILSRSIPGCIQ  405 (443)
Q Consensus       395 LVeKLlPgW~e  405 (443)
                      +|++++|+|.+
T Consensus        79 ~v~~l~p~w~~   89 (89)
T d1hbka_          79 IVSEIFPYWQD   89 (89)
T ss_dssp             HHHHHCTTTTC
T ss_pred             HHHHHcccccC
Confidence            99999999974

>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Acyl-CoA binding protein
family: Acyl-CoA binding protein
domain: Acyl-CoA binding protein
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=4.5e-29  Score=200.85  Aligned_cols=84  Identities=24%  Similarity=0.342  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCCCCCCCcchhhHHHHHHHHHcCCCCHHHHHHHHHHH
Q 013405          316 ERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVTI  395 (443)
Q Consensus       316 EEaFeAAVefVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~PKPG~fD~vGRAKWnAWKkLKGMSKEEAMrKYIEL  395 (443)
                      +..|+.|+.+|++++     .+|+++++|+|||||||||+|||+.++|++|++.+|+||+||++++|||+++||+.||++
T Consensus         2 ~~~F~~A~~~v~~~~-----~~~~~~~~L~LYalyKQat~Gd~~~~~P~~~~~~~~aKw~AW~~~~gms~~eA~~~YI~~   76 (86)
T d1hb6a_           2 QAEFDKAAEEVKHLK-----TKPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNELKGTSKEDAMKAYIDK   76 (86)
T ss_dssp             HHHHHHHHHHGGGCS-----SCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC-----CCcCHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            468999999999986     368999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCcCcc
Q 013405          396 LSRSIPGCI  404 (443)
Q Consensus       396 VeKLlPgW~  404 (443)
                      +++++|.|.
T Consensus        77 v~~l~~k~g   85 (86)
T d1hb6a_          77 VEELKKKYG   85 (86)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999999884

>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Merlin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=5.8e-05  Score=59.46  Aligned_cols=66  Identities=14%  Similarity=0.120  Sum_probs=50.1

Q ss_pred             CCCCCCChHHHHHHHHhhhccccCCCCCC--CCCCcch-------------hhHHHH-----HHHHHcCCCCHHHHHHHH
Q 013405          333 GRISSIGSDVKMQLYGLHKIATVGPCREP--QPMALKV-------------SARANW-----NAWKQLGNMTPEIAMEQY  392 (443)
Q Consensus       333 G~VsqLSnDdKLeLYALYKQATeGDCn~P--KPG~fD~-------------vGRAKW-----nAWKkLKGMSKEEAMrKY  392 (443)
                      |.+ ..+.++-+.|.||.-||.+||++..  .|+.++.             .....|     +.|+.++|||+.+|+..|
T Consensus        26 G~~-~~~~~~a~~LAal~~Qae~GD~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~I~~~hk~l~G~s~~~A~~~y  104 (111)
T d1h4ra1          26 EKI-YCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEY  104 (111)
T ss_dssp             TSS-CCCHHHHHHHHHHHHHHHHCSCCTTTSCTTTTTTCCCSCHHHHTTSCCCHHHHHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred             CCC-CCCHHHHHHHHHHHHHHHhCCCChhhcccchhhhhhcCCchHHHHhhccHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            443 6789999999999999999998763  3332211             112334     479999999999999999


Q ss_pred             HHHHHhh
Q 013405          393 VTILSRS  399 (443)
Q Consensus       393 IELVeKL  399 (443)
                      ++++.+|
T Consensus       105 L~~~~~L  111 (111)
T d1h4ra1         105 LKIAQDL  111 (111)
T ss_dssp             HHHHTTS
T ss_pred             HHHHhhC
Confidence            9999765

>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Talin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.45  E-value=0.00019  Score=56.22  Aligned_cols=77  Identities=25%  Similarity=0.250  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHhccCCCCCCCCCChHHHHHHHHhhhccccCCCCCC--CCCCcc-------------hhhHHHHHHHHHcC
Q 013405          317 RLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREP--QPMALK-------------VSARANWNAWKQLG  381 (443)
Q Consensus       317 EaFeAAVefVrsLpk~G~VsqLSnDdKLeLYALYKQATeGDCn~P--KPG~fD-------------~vGRAKWnAWKkLK  381 (443)
                      --|..+-.-|-.    |.+ .++.++-+.|-||.-||..||++..  .|..+.             +.. .=-+.|++++
T Consensus        20 l~y~Q~k~dil~----G~~-~~~~~~a~~Laal~~Q~e~Gd~~~~~~~~~~~~~~~~lP~~~~~~~~~~-~i~~~h~~l~   93 (114)
T d1mixa1          20 LLYVQARDDILN----GSH-PVSFDKACEFAGYQCQIQFGPHNEQKHKPGFLELKDFLPKEYIKQKGER-KIFMAHKNCG   93 (114)
T ss_dssp             HHHHHHHHHHHT----TSS-CCCHHHHHHHHHHHHHHHHCSCCTTTSCTTCSCGGGTSCGGGSTTCCHH-HHHHHHHHTT
T ss_pred             HHHHHHHHHHHC----CCC-CCCHHHHHHHHHHHHHHHhCCCCccccccchhhhcccCChhhchHHHHH-HHHHHHHHcc
Confidence            344455544432    443 6789999999999999999998763  333221             111 2237799999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q 013405          382 NMTPEIAMEQYVTILSRS  399 (443)
Q Consensus       382 GMSKEEAMrKYIELVeKL  399 (443)
                      |||+.+|+.+|++++.++
T Consensus        94 g~s~~~A~~~yL~~~~~l  111 (114)
T d1mixa1          94 NMSEIEAKVRYVKLARSL  111 (114)
T ss_dssp             TCCHHHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHhcC
Confidence            999999999999999876

>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Erythroid membrane protein 4.1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.00025  Score=55.53  Aligned_cols=63  Identities=11%  Similarity=-0.005  Sum_probs=49.2

Q ss_pred             CCChHHHHHHHHhhhccccCCCCCC--CCCCcc-----h-----hhHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 013405          337 SIGSDVKMQLYGLHKIATVGPCREP--QPMALK-----V-----SARANWNAWKQLGNMTPEIAMEQYVTILSRS  399 (443)
Q Consensus       337 qLSnDdKLeLYALYKQATeGDCn~P--KPG~fD-----~-----vGRAKWnAWKkLKGMSKEEAMrKYIELVeKL  399 (443)
                      ..+.++-..|.||--||-.||++..  .++.+.     +     ....=...|+++.|||+.+|+..|++++.++
T Consensus        29 ~~~~~~a~~Laal~~Qae~GD~~~~~~~~~yl~~~~~~p~~~~~~~~~I~~~h~~l~G~s~~~A~~~fL~~~~~l  103 (106)
T d1gg3a1          29 PCSFATLALLGSYTIQSELGDYDPELHGVDYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKKL  103 (106)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCSCCTTSCSSCCGGGSCCCSSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCCccccchhhhhHHhcCCccHHHHHHHHHHHHHHccCcCHHHHHHHHHHHHhcC
Confidence            6889999999999999999999763  233211     1     1122236799999999999999999999886

>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.00024  Score=55.95  Aligned_cols=66  Identities=15%  Similarity=0.146  Sum_probs=50.2

Q ss_pred             CCCCCCChHHHHHHHHhhhccccCCCCCC--CCCCcch-----h--------hHHHH-----HHHHHcCCCCHHHHHHHH
Q 013405          333 GRISSIGSDVKMQLYGLHKIATVGPCREP--QPMALKV-----S--------ARANW-----NAWKQLGNMTPEIAMEQY  392 (443)
Q Consensus       333 G~VsqLSnDdKLeLYALYKQATeGDCn~P--KPG~fD~-----v--------GRAKW-----nAWKkLKGMSKEEAMrKY  392 (443)
                      |.+ ..+.++-+.|.||--||.+||++..  .|+.+..     .        ...-|     +.|+.++|||+.+|+..|
T Consensus        26 G~~-~~~~~~a~~Laal~~Qae~GD~~~~~~~~~~l~~~~~lP~~~~~~~~~~~~~~~~~I~~~h~~l~g~s~~~A~~~f  104 (111)
T d1ef1a1          26 DDI-YCPPETAVLLASYAVQSKYGDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEY  104 (111)
T ss_dssp             TSS-CCCHHHHHHHHHHHHHHHHCSCCTTTSCTTTTTTCCCSCHHHHHHBCCCHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             CCC-CCCHHHHHHHHHHHHHHHhCCCCcccccHHHHHHHhcCchHHHhcccccHHHHHHHHHHHHHHcCCcCHHHHHHHH
Confidence            443 6889999999999999999998763  3332211     0        01222     789999999999999999


Q ss_pred             HHHHHhh
Q 013405          393 VTILSRS  399 (443)
Q Consensus       393 IELVeKL  399 (443)
                      ++++.+|
T Consensus       105 L~~~~~L  111 (111)
T d1ef1a1         105 LKIAQDL  111 (111)
T ss_dssp             HHHHTTS
T ss_pred             HHHHhcC
Confidence            9999765

>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Focal adhesion kinase 1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.46  E-value=0.011  Score=46.83  Aligned_cols=63  Identities=16%  Similarity=0.237  Sum_probs=47.0

Q ss_pred             CCChHHHHHHHHhhhccccCCCCCCCCC----------------Ccc--hh--------hHHHHHHHHHcCCCCHHHHHH
Q 013405          337 SIGSDVKMQLYGLHKIATVGPCREPQPM----------------ALK--VS--------ARANWNAWKQLGNMTPEIAME  390 (443)
Q Consensus       337 qLSnDdKLeLYALYKQATeGDCn~PKPG----------------~fD--~v--------GRAKWnAWKkLKGMSKEEAMr  390 (443)
                      .++.+.-+.|=||--|+-.||++...+.                ++.  +.        .+.=...|++++|||+.||+-
T Consensus        32 ~~~~e~Ai~Laal~~Q~~~gd~~~~~~~~~~~~~~~~~~~~L~~flP~~~l~~~~~~~~~k~I~~~~k~~~gls~~eA~~  111 (123)
T d2al6a1          32 QVDQEIALKLGCLEIRRSYGEMRGNALEKKSNYEVLEKDVGLRRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNREESIL  111 (123)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTSCTTGGGSHHHHHHHHHTTCGGGTSCHHHHHSSCHHHHHHHHHHHHHTTTTCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhccchhhcccccccchhhhhhhHHhcCChHHHhhcccHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            4678888999999999999999764321                010  00        111126788999999999999


Q ss_pred             HHHHHHHhh
Q 013405          391 QYVTILSRS  399 (443)
Q Consensus       391 KYIELVeKL  399 (443)
                      +|++++.++
T Consensus       112 ~fL~~~~~l  120 (123)
T d2al6a1         112 KFFEILSPV  120 (123)
T ss_dssp             HHHHHHTTT
T ss_pred             HHHHHHHhc
Confidence            999999876