Citrus Sinensis ID: 013406

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440---
Protein Sequence
MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALRPGPPPGSKGKKPKSFSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGESEQGEHQFSQGQSMNQERGWRKRPYSEMGGMVDGSAGNNSGQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccEEEEEEEEccccccEEEEEcccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEEEccccccccEEEEEEcccccccEEEEEcccccHHHcEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHccccccEcccccccEcccccccccc
Coil and Loop (DISEMBL)
mdyqlsdssgtdddlppshhnrfqrgvrptgngrsavigsaslprmqndmATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRkasglqpgmpsipqpvhdpapsptvsasrkktktsqsvaslstgapspgmhpsvqpsssalrpgpppgskgkkpksfstglagrgqvanrgssgafpangpseaatynpligrkvwtrwpednhfyeavitdynpnegrhaLVYDINTADETWewvnlkeispedikwegdepgisrkggrpgpgrgtkkpltrgggvsgagrgrgtmkpkkgfpfsqngigkkplgdieILHTETLIKEVEKVFaanhpdptdVEKAKRVLKEQELALVNAIAKledasdgeseqgehqfsqgqsmnqergwrkrpysemggmvdgsagnnsgq
Flexible Loop (DISEMBL)
mdyqlsdssgtdddlppshhnrfqrgvrptgngRSAVIGSASLPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRkelrvsdeehrellskvnaddiiLRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSasrkktktsqsvaslstgapspgmhPSVQPSSSALRPGPPPGSKGKKPKSFSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNlkeispedikwegdepgisrkggrpgpgrgtkkpltrgggvsgagrgrgtmkpkkgfpfsqngigkkplGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGESEQgehqfsqgqsmnqerGWRKRPYsemggmvdgsagnnsgq
Low Complexity Region (SEG)
MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALRpgpppgskgkkpksFSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISrkggrpgpgrgtkkpLTrgggvsgagrgrgTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGESEQGEHQFSQGQSMNQERGWRKRPYSEMGGMVDGSAGNNSGQ
Disordered region (IsUnstruct)
*************************************************************YSSVLRAFKAQSDAITWEKESLITELRK***********LLSKVNADDIILRIREWR*********************************************************************************************************TYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP*************************************************************PLGDIEILHTETLIKEVEKVFAA*******************LALVNAI****************************************************
Disordered Region (DISOPRED)
*****************************************************IHSVEQDAYSSVLRAFKAQSD**TWE**SLITELRKELRVSDEE*********************************************************************************************************************************PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP******************************************************************************************************************************************************************
Disordered Region (DISEMBL)
****************PSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASGLQPGMPSIPQP***************************************************************TGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLE**************************RKRPYSEMGGMVDG********
Disordered Region (DISPRO)
*************DLPPSH********************SASLPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA********************************************************************************************************YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDE******************************************************GDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLED***********************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLxxxxxxxxxxxxxxxxxxxxxVNADDIILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALRPGPPPGSKGKKPKSFSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIKEVEKVFAANHPDPTDxxxxxxxxxxxxxxxxxxxxxLEDASDGESEQGEHQFSQGQSMNQERGWRKRPYSEMGGMVDGSAGNNSGQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	443
224057174	399	predicted protein [Populus trichocarpa]	0.887	0.984	0.762	1e-168
297746393	446	unnamed protein product [Vitis vinifera]	0.907	0.901	0.724	1e-165
225435596	449	PREDICTED: uncharacterized protein LOC10	0.907	0.895	0.719	1e-164
255544742	402	conserved hypothetical protein [Ricinus	0.884	0.975	0.762	1e-161
359487460	424	PREDICTED: uncharacterized protein LOC10	0.927	0.969	0.665	1e-152
449502209	418	PREDICTED: uncharacterized protein LOC10	0.930	0.985	0.679	1e-151
297741224	433	unnamed protein product [Vitis vinifera]	0.927	0.949	0.652	1e-151
449462597	418	PREDICTED: uncharacterized protein LOC10	0.930	0.985	0.677	1e-151
7630058	414	putative protein [Arabidopsis thaliana]	0.882	0.944	0.688	1e-150
30684221	397	Emsy N Terminus and plant Tudor-like dom	0.875	0.977	0.691	1e-149

>gi|224057174|ref|XP_002299156.1| predicted protein [Populus trichocarpa] gi|222846414|gb|EEE83961.1| predicted protein [Populus trichocarpa]

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 309/405 (76%), Positives = 341/405 (84%), Gaps = 12/405 (2%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
           MDY+LSDSSGTDDDLPP+H NRFQ G R  GNGRSAV G+AS PR+ +DM TQIH++EQ+
Sbjct: 1   MDYELSDSSGTDDDLPPTHRNRFQSGARTAGNGRSAVGGAASQPRLHSDMETQIHNIEQE 60

Query: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
           AY+SVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELL++VNADD+I RIREWRKA
Sbjct: 61  AYTSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLARVNADDMIRRIREWRKA 120

Query: 121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
           +G+QP MPS  QP HDP PSPTVS SRKK KTSQSVASLS   PSP +HPS+QPS+SALR
Sbjct: 121 NGIQPSMPSTAQPSHDPIPSPTVSGSRKKQKTSQSVASLSMVVPSPVLHPSMQPSTSALR 180

Query: 181 PGPPPGSKGKKPKS-FSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPE 239
            GPPPGS  KKPKS  STGL+ R Q ANRGSSG F  N          LIG+KVWTRWPE
Sbjct: 181 HGPPPGSGNKKPKSQRSTGLSSRAQAANRGSSGVFATND---------LIGKKVWTRWPE 231

Query: 240 DNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGR 299
           DNHFYEAVITDYNP EGRHALVYDINT DETWEWVNLKEISPEDI+WEG+EPG+ R+GGR
Sbjct: 232 DNHFYEAVITDYNPVEGRHALVYDINTGDETWEWVNLKEISPEDIRWEGEEPGLFRRGGR 291

Query: 300 PGPGRGTKKPLTRGGGVSGAGRGRGTMK--PKKGFPFSQNGIGKKPLGDIEILHTETLIK 357
           PGPGRG KK + RGG V  AGRGRGT K   KK FP  QNGIGKK +GDIEILHT TLIK
Sbjct: 292 PGPGRGNKKAIARGGAVVTAGRGRGTTKGQSKKDFPLIQNGIGKKAMGDIEILHTNTLIK 351

Query: 358 EVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGES 402
           EVEKVF A+HPDP ++EKAK+ L+EQE ALVNAIA+LE+ASDGES
Sbjct: 352 EVEKVFGASHPDPLEIEKAKKALEEQEQALVNAIARLEEASDGES 396

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746393|emb|CBI16449.3| unnamed protein product [Vitis vinifera]

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 295/407 (72%), Positives = 333/407 (81%), Gaps = 5/407 (1%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
           MDY LSDSSGTDDDLPPSH NRF RG R +GNGRS V+GSA  PRM  DM  QIH +EQ+
Sbjct: 1   MDYGLSDSSGTDDDLPPSHQNRFSRGGRASGNGRSGVLGSAPFPRMHGDMEAQIHHIEQE 60

Query: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
           AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLS+VNADDII  IREWRK 
Sbjct: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNADDIIRSIREWRKG 120

Query: 121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
            GLQ GM +  QPVH+  PSPTVSASRKK KTSQS+ASLS GAPSP +HP++QPSSSAL+
Sbjct: 121 GGLQHGMAA--QPVHESIPSPTVSASRKKQKTSQSIASLSLGAPSPALHPTMQPSSSALK 178

Query: 181 PGPPPGSKGKKPKSF-STGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPE 239
             P P SK KK K + S GL GR Q+ANRGSSGAF  N  +E  TY+PLIG+KVWTRWPE
Sbjct: 179 HAPTPRSKSKKTKPYPSAGLTGRPQLANRGSSGAFVGNEAAEGTTYDPLIGKKVWTRWPE 238

Query: 240 DNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGR 299
           DNHFYEAVITDYNP EGRHALVYDINT +ETWEWVNLKEISPEDI+WEGDE G+SR+G R
Sbjct: 239 DNHFYEAVITDYNPVEGRHALVYDINTTNETWEWVNLKEISPEDIRWEGDESGMSRRGSR 298

Query: 300 PGPGRGTKKPLTRGGGVSGAGRGRGTMK--PKKGFPFSQNGIGKKPLGDIEILHTETLIK 357
           PGPGRG KK + RGG V+GAGRGRGT K   KK FP SQNG+ KK    +EI +T++LIK
Sbjct: 299 PGPGRGMKKSMARGGAVTGAGRGRGTPKGQSKKVFPPSQNGLEKKDDSSLEIYNTDSLIK 358

Query: 358 EVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGESEQ 404
           EVE+V    +PD   + + K++LKEQE ALV+ IAKL++ASDGESE+
Sbjct: 359 EVERVVTTANPDSVQILEVKKMLKEQEQALVDIIAKLDEASDGESEE 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435596|ref|XP_002285615.1| PREDICTED: uncharacterized protein LOC100257061 [Vitis vinifera]

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 295/410 (71%), Positives = 332/410 (80%), Gaps = 8/410 (1%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
           MDY LSDSSGTDDDLPPSH NRF RG R +GNGRS V+GSA  PRM  DM  QIH +EQ+
Sbjct: 1   MDYGLSDSSGTDDDLPPSHQNRFSRGGRASGNGRSGVLGSAPFPRMHGDMEAQIHHIEQE 60

Query: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
           AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLS+VNADDII  IREWRK 
Sbjct: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNADDIIRSIREWRKG 120

Query: 121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
            GLQ GM +  QPVH+  PSPTVSASRKK KTSQS+ASLS GAPSP +HP++QPSSSAL+
Sbjct: 121 GGLQHGMAA--QPVHESIPSPTVSASRKKQKTSQSIASLSLGAPSPALHPTMQPSSSALK 178

Query: 181 PGPPPGSKGKKPKSF----STGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTR 236
             P P SK KK K      S GL GR Q+ANRGSSGAF  N  +E  TY+PLIG+KVWTR
Sbjct: 179 HAPTPRSKSKKTKPSMQYPSAGLTGRPQLANRGSSGAFVGNEAAEGTTYDPLIGKKVWTR 238

Query: 237 WPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRK 296
           WPEDNHFYEAVITDYNP EGRHALVYDINT +ETWEWVNLKEISPEDI+WEGDE G+SR+
Sbjct: 239 WPEDNHFYEAVITDYNPVEGRHALVYDINTTNETWEWVNLKEISPEDIRWEGDESGMSRR 298

Query: 297 GGRPGPGRGTKKPLTRGGGVSGAGRGRGTMK--PKKGFPFSQNGIGKKPLGDIEILHTET 354
           G RPGPGRG KK + RGG V+GAGRGRGT K   KK FP SQNG+ KK    +EI +T++
Sbjct: 299 GSRPGPGRGMKKSMARGGAVTGAGRGRGTPKGQSKKVFPPSQNGLEKKDDSSLEIYNTDS 358

Query: 355 LIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGESEQ 404
           LIKEVE+V    +PD   + + K++LKEQE ALV+ IAKL++ASDGESE+
Sbjct: 359 LIKEVERVVTTANPDSVQILEVKKMLKEQEQALVDIIAKLDEASDGESEE 408

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544742|ref|XP_002513432.1| conserved hypothetical protein [Ricinus communis] gi|223547340|gb|EEF48835.1| conserved hypothetical protein [Ricinus communis]

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 305/400 (76%), Positives = 343/400 (85%), Gaps = 8/400 (2%)

Query: 9   SGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQDAYSSVLRA 68
           +GTDDDLPPSH NRFQ GVRP GNGRS  +GS S+PR+ +DM TQIH++EQ+AY+SVLRA
Sbjct: 2   AGTDDDLPPSHRNRFQSGVRPAGNGRSTAVGSTSIPRLHSDMETQIHNIEQEAYTSVLRA 61

Query: 69  FKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASGLQPGMP 128
           FKAQSDAITWEKESLITELRKELRVSDEEHRELLS+VN+DDII RIREWRK +GLQPGMP
Sbjct: 62  FKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNSDDIIRRIREWRKTNGLQPGMP 121

Query: 129 SIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALRPGPPPGSK 188
           S  QP HDP+PSPTVSAS KK KTSQSVASLS GAPSP + PS+QPSSSA R GPPPG +
Sbjct: 122 STAQPAHDPSPSPTVSASHKKQKTSQSVASLSMGAPSPAL-PSMQPSSSAFRRGPPPGPR 180

Query: 189 GKKPKSF----STGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFY 244
            KKPKS     S GL GR Q ANR SSGAF AN P+EA +Y+ LIGRKVWTRWPEDNHFY
Sbjct: 181 SKKPKSSMQYPSAGLTGRAQAANRSSSGAFAANEPAEATSYD-LIGRKVWTRWPEDNHFY 239

Query: 245 EAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGRPGPGR 304
           EAVITDY P EGRHALVYDINTADETWEWVNLKEISPEDI+W+ ++ G+ R+GGRPGPGR
Sbjct: 240 EAVITDYKPAEGRHALVYDINTADETWEWVNLKEISPEDIRWKDEDQGVFRRGGRPGPGR 299

Query: 305 GTKKPLTRGGGVSGAGRGRGTMK--PKKGFPFSQNGIGKKPLGDIEILHTETLIKEVEKV 362
           G KK +  GGG+ GAGRGRGTMK   +K FP +QNGIG+K L DIEILHT+TLIKEVEKV
Sbjct: 300 GNKKSMAHGGGLGGAGRGRGTMKGQSRKEFPLAQNGIGRKALDDIEILHTDTLIKEVEKV 359

Query: 363 FAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGES 402
           F+ANH DP ++EKAK+VL+E E ALV+AIA+LEDASDGES
Sbjct: 360 FSANHADPMEIEKAKKVLQEHEQALVDAIARLEDASDGES 399

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487460|ref|XP_002273408.2| PREDICTED: uncharacterized protein LOC100263217 [Vitis vinifera]

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 287/431 (66%), Positives = 332/431 (77%), Gaps = 20/431 (4%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRM--QNDMATQIHSVE 58
           MDY+  DSSGTDDDLPP H NR  RG R  GNGRSAV+GS    RM  + DM TQIH +E
Sbjct: 1   MDYEPFDSSGTDDDLPPPHQNRIPRGGRVAGNGRSAVVGSIPYSRMYGETDMETQIHQLE 60

Query: 59  QDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWR 118
           Q+AYSSVLRAFKAQ+DAITWEKESLITELRKELR+S+EEHRELL +VNADD+I RIREWR
Sbjct: 61  QEAYSSVLRAFKAQADAITWEKESLITELRKELRLSNEEHRELLGRVNADDVIRRIREWR 120

Query: 119 KASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHP-----SVQ 173
           +A GLQPGM +  Q VHDP PSPTVSASRKK K +QS+ S S G PS   HP     S Q
Sbjct: 121 QAGGLQPGMLTTGQAVHDPIPSPTVSASRKKQKITQSIPSQSFGGPSQSFHPQAIAASNQ 180

Query: 174 PSSSALRPGPPPGSKGKKPKS----FSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLI 229
           PSSSA + GP  G KGKK KS     S+G  GRGQVANRG       N P+EAAT++PLI
Sbjct: 181 PSSSAAKRGPILGPKGKKHKSSMQYASSGPTGRGQVANRG------VNEPAEAATFDPLI 234

Query: 230 GRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGD 289
           GRKV TRWP+DN+FYEAVITDYNP EGRHALVYD+ +A+ETWEWVNL EISPEDI+W+G+
Sbjct: 235 GRKVRTRWPDDNNFYEAVITDYNPVEGRHALVYDMGSANETWEWVNLSEISPEDIQWDGE 294

Query: 290 EPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMK--PKKGFPFSQNGIGKKPLGDI 347
           +PGISR+GG  G G G  + + R   V GAGRGRG  K   KK F  SQNGIGKK   DI
Sbjct: 295 DPGISRRGGYDGSGHGMNRAVGR-DSVQGAGRGRGLPKGQSKKDFLPSQNGIGKKAPDDI 353

Query: 348 EILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGESEQGEH 407
           +ILHT+TLIKEVE+VF ANHPDP +++KAK+VLKE E AL++AI +L D SDGES++G H
Sbjct: 354 QILHTDTLIKEVERVFTANHPDPLEIDKAKKVLKEHEQALLDAIGRLADISDGESDEGGH 413

Query: 408 QFSQGQSMNQE 418
           QFS G SM++E
Sbjct: 414 QFSHGHSMDRE 424

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502209|ref|XP_004161575.1| PREDICTED: uncharacterized protein LOC101228708 [Cucumis sativus]

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 284/418 (67%), Positives = 323/418 (77%), Gaps = 6/418 (1%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
           M+Y+ SDSSGTDDDLPP H +RFQRG  P GNGRSA + S++LPRM  DM  QIH +EQ+
Sbjct: 1   MEYEPSDSSGTDDDLPPPHQSRFQRGGLPAGNGRSAPVNSSALPRMLGDMEMQIHHIEQE 60

Query: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
           AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHR+LLS+VNADD+I RIREWR A
Sbjct: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRKLLSRVNADDVIKRIREWRTA 120

Query: 121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
           +GLQPG  +  QP+ DP PSPT SASRKK KTSQ  ASLS GAP+P M  ++ PSSS LR
Sbjct: 121 NGLQPGKLNSDQPMADPVPSPTASASRKKQKTSQ--ASLSQGAPTPAMPTTIPPSSSTLR 178

Query: 181 PGPPPGSKGKKPKS-FSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPE 239
            GPPPG++  K KS   TG  G  QV NRGS GAF +N  +E   + PLIGRKVWTRWPE
Sbjct: 179 RGPPPGARTTKTKSAMHTGPTGSAQVNNRGSLGAFASNENAEGVNHEPLIGRKVWTRWPE 238

Query: 240 DNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGR 299
           DN FYEAVITDYN  EGRHALVYDINTA ETWEWVNLKEISPEDI+WE +     R G R
Sbjct: 239 DNSFYEAVITDYNHAEGRHALVYDINTAHETWEWVNLKEISPEDIRWEREVSAALRGGAR 298

Query: 300 PGPGRGTKKPLT--RGGGVSGAGRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIK 357
           PG GRG KK +T        G GRG    + ++  P SQNG  K+P GDIEILHT+TLIK
Sbjct: 299 PGHGRGNKKSMTRGGAVAAGGRGRGTTKGQSRRDLPVSQNGSRKQPTGDIEILHTDTLIK 358

Query: 358 EVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGESEQGEHQFSQGQSM 415
           EVEKVF AN PDP ++EKAK+VLK+ E +LV+AIA+LEDASDGES+ G   +SQGQSM
Sbjct: 359 EVEKVFGANQPDPMEIEKAKKVLKDHEQSLVDAIARLEDASDGESD-GREPYSQGQSM 415

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741224|emb|CBI32175.3| unnamed protein product [Vitis vinifera]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 287/440 (65%), Positives = 332/440 (75%), Gaps = 29/440 (6%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRM--QNDMATQIHSVE 58
           MDY+  DSSGTDDDLPP H NR  RG R  GNGRSAV+GS    RM  + DM TQIH +E
Sbjct: 1   MDYEPFDSSGTDDDLPPPHQNRIPRGGRVAGNGRSAVVGSIPYSRMYGETDMETQIHQLE 60

Query: 59  QDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWR 118
           Q+AYSSVLRAFKAQ+DAITWEKESLITELRKELR+S+EEHRELL +VNADD+I RIREWR
Sbjct: 61  QEAYSSVLRAFKAQADAITWEKESLITELRKELRLSNEEHRELLGRVNADDVIRRIREWR 120

Query: 119 KASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHP-----SVQ 173
           +A GLQPGM +  Q VHDP PSPTVSASRKK K +QS+ S S G PS   HP     S Q
Sbjct: 121 QAGGLQPGMLTTGQAVHDPIPSPTVSASRKKQKITQSIPSQSFGGPSQSFHPQAIAASNQ 180

Query: 174 PSSSALRPGPPPGSKGKKPKSF-------------STGLAGRGQVANRGSSGAFPANGPS 220
           PSSSA + GP  G KGKK KS              S+G  GRGQVANRG       N P+
Sbjct: 181 PSSSAAKRGPILGPKGKKHKSVLPGASSMKSMQYASSGPTGRGQVANRG------VNEPA 234

Query: 221 EAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEIS 280
           EAAT++PLIGRKV TRWP+DN+FYEAVITDYNP EGRHALVYD+ +A+ETWEWVNL EIS
Sbjct: 235 EAATFDPLIGRKVRTRWPDDNNFYEAVITDYNPVEGRHALVYDMGSANETWEWVNLSEIS 294

Query: 281 PEDIKWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMK--PKKGFPFSQNG 338
           PEDI+W+G++PGISR+GG  G G G  + + R   V GAGRGRG  K   KK F  SQNG
Sbjct: 295 PEDIQWDGEDPGISRRGGYDGSGHGMNRAVGR-DSVQGAGRGRGLPKGQSKKDFLPSQNG 353

Query: 339 IGKKPLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDAS 398
           IGKK   DI+ILHT+TLIKEVE+VF ANHPDP +++KAK+VLKE E AL++AI +L D S
Sbjct: 354 IGKKAPDDIQILHTDTLIKEVERVFTANHPDPLEIDKAKKVLKEHEQALLDAIGRLADIS 413

Query: 399 DGESEQGEHQFSQGQSMNQE 418
           DGES++G HQFS G SM++E
Sbjct: 414 DGESDEGGHQFSHGHSMDRE 433

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462597|ref|XP_004149027.1| PREDICTED: uncharacterized protein LOC101218087 [Cucumis sativus]

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 283/418 (67%), Positives = 323/418 (77%), Gaps = 6/418 (1%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
           M+Y+ SDSSGTDDDLPP H +RFQRG  P GNGRSA + S++LPRM  DM  QIH +EQ+
Sbjct: 1   MEYEPSDSSGTDDDLPPPHQSRFQRGGLPAGNGRSAPVNSSALPRMLGDMEMQIHHIEQE 60

Query: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
           AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHR+LLS+VNADD+I RIREWR A
Sbjct: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRKLLSRVNADDVIKRIREWRTA 120

Query: 121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
           +GLQPG  +  QP+ DP PSPT SASRKK KTSQ  ASLS GAP+P M  ++ PSSS LR
Sbjct: 121 NGLQPGKLNSDQPMADPVPSPTASASRKKQKTSQ--ASLSQGAPTPAMPTTIPPSSSTLR 178

Query: 181 PGPPPGSKGKKPKS-FSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPE 239
            GPPPG++  K KS   TG  G  QV NRGS GAF +N  +E   + PLIGRKVWTRWPE
Sbjct: 179 RGPPPGARTTKTKSAMHTGPTGSAQVNNRGSLGAFASNENAEGVNHEPLIGRKVWTRWPE 238

Query: 240 DNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGR 299
           DN FYEAVITDYN  EGRHALVYDINTA ETWEWVNLKEISPEDI+WE +     R G R
Sbjct: 239 DNSFYEAVITDYNHAEGRHALVYDINTAHETWEWVNLKEISPEDIRWEREVSAALRGGAR 298

Query: 300 PGPGRGTKKPLT--RGGGVSGAGRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIK 357
           PG GRG +K +T        G GRG    + ++  P SQNG  K+P GDIEILHT+TLIK
Sbjct: 299 PGHGRGNRKSMTRGGAVAAGGRGRGTTKGQSRRDLPVSQNGSRKQPTGDIEILHTDTLIK 358

Query: 358 EVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGESEQGEHQFSQGQSM 415
           EVEKVF AN PDP ++EKAK+VLK+ E +LV+AIA+LEDASDGES+ G   +SQGQSM
Sbjct: 359 EVEKVFGANQPDPMEIEKAKKVLKDHEQSLVDAIARLEDASDGESD-GREPYSQGQSM 415

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7630058|emb|CAB88266.1| putative protein [Arabidopsis thaliana]

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 283/411 (68%), Positives = 333/411 (81%), Gaps = 20/411 (4%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
           MDY+ SDSSGTDDDLPPSH  R+QR  RPTGNGR +V+ SA L R+ N+M TQIH +EQ+
Sbjct: 1   MDYRPSDSSGTDDDLPPSHQGRYQRNARPTGNGRPSVLNSAPLSRVHNEMETQIHLIEQE 60

Query: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
           AYSS+LRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLS+VNAD++I RIREWRKA
Sbjct: 61  AYSSILRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNADEMIRRIREWRKA 120

Query: 121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
           + LQ    S+PQ VHD APSP VS SRKK KTSQS+ASL+ G PSP +HPS+QPSSSALR
Sbjct: 121 NSLQ---SSVPQLVHD-APSPAVSGSRKKQKTSQSIASLAMGPPSPSLHPSMQPSSSALR 176

Query: 181 PGPPPGSKGKKPKSF-----STGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWT 235
            G PP     K         STG+AGR Q      +GA   N P E+ +Y+PL+GRKVWT
Sbjct: 177 RGGPPPGPKTKKPKTSMQYPSTGIAGRPQ------AGAL-TNEPGESGSYDPLVGRKVWT 229

Query: 236 RWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISR 295
           +WP+DN +YEAVITDYNP EGRHALVYDIN+A+ETWEWVNLKEISP DI+WEG++PGISR
Sbjct: 230 KWPDDNQYYEAVITDYNPVEGRHALVYDINSANETWEWVNLKEISPGDIRWEGEDPGISR 289

Query: 296 KGGRPGPGRGTKKPLTRGGGVSGA-GRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTET 354
           KGG PG GRGTK  + RGG  S A GRGRG+M+ ++  P +QNGIGKK LG+IEILHTET
Sbjct: 290 KGGHPGQGRGTKT-MARGGPASNAGGRGRGSMRMQQ--PKTQNGIGKKALGEIEILHTET 346

Query: 355 LIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGESEQG 405
           L+KEVEKVF + +P+P +VEKAKRVL++ ELAL++AIAKLE+ SDGES+ G
Sbjct: 347 LLKEVEKVFGSVNPNPAEVEKAKRVLRDHELALMDAIAKLEEISDGESDDG 397

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30684221|ref|NP_196806.2| Emsy N Terminus and plant Tudor-like domain-containing protein [Arabidopsis thaliana] gi|332004459|gb|AED91842.1| Emsy N Terminus and plant Tudor-like domain-containing protein [Arabidopsis thaliana]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 282/408 (69%), Positives = 331/408 (81%), Gaps = 20/408 (4%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
           MDY+ SDSSGTDDDLPPSH  R+QR  RPTGNGR +V+ SA L R+ N+M TQIH +EQ+
Sbjct: 1   MDYRPSDSSGTDDDLPPSHQGRYQRNARPTGNGRPSVLNSAPLSRVHNEMETQIHLIEQE 60

Query: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
           AYSS+LRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLS+VNAD++I RIREWRKA
Sbjct: 61  AYSSILRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNADEMIRRIREWRKA 120

Query: 121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
           + LQ    S+PQ VHD APSP VS SRKK KTSQS+ASL+ G PSP +HPS+QPSSSALR
Sbjct: 121 NSLQ---SSVPQLVHD-APSPAVSGSRKKQKTSQSIASLAMGPPSPSLHPSMQPSSSALR 176

Query: 181 PGPPPGSKGKKPKSF-----STGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWT 235
            G PP     K         STG+AGR Q      +GA   N P E+ +Y+PL+GRKVWT
Sbjct: 177 RGGPPPGPKTKKPKTSMQYPSTGIAGRPQ------AGAL-TNEPGESGSYDPLVGRKVWT 229

Query: 236 RWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISR 295
           +WP+DN +YEAVITDYNP EGRHALVYDIN+A+ETWEWVNLKEISP DI+WEG++PGISR
Sbjct: 230 KWPDDNQYYEAVITDYNPVEGRHALVYDINSANETWEWVNLKEISPGDIRWEGEDPGISR 289

Query: 296 KGGRPGPGRGTKKPLTRGGGVSGA-GRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTET 354
           KGG PG GRGTK  + RGG  S A GRGRG+M+ ++  P +QNGIGKK LG+IEILHTET
Sbjct: 290 KGGHPGQGRGTKT-MARGGPASNAGGRGRGSMRMQQ--PKTQNGIGKKALGEIEILHTET 346

Query: 355 LIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGES 402
           L+KEVEKVF + +P+P +VEKAKRVL++ ELAL++AIAKLE+ SDGES
Sbjct: 347 LLKEVEKVFGSVNPNPAEVEKAKRVLRDHELALMDAIAKLEEISDGES 394

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	443
TAIR|locus:2182345	397	EML3 "AT5G13020" [Arabidopsis	0.889	0.992	0.631	3.2e-129
TAIR|locus:2050594	429	EML4 "AT2G44440" [Arabidopsis	0.392	0.405	0.557	2.3e-93
TAIR|locus:2099287	383	EML1 "AT3G12140" [Arabidopsis	0.252	0.292	0.657	2.5e-83
TAIR|locus:2170179	320	EML2 "AT5G06780" [Arabidopsis	0.417	0.578	0.492	1.8e-72
TAIR|locus:2095868	319	AT3G57970 "AT3G57970" [Arabido	0.139	0.194	0.353	3.8e-11
TAIR|locus:2095858	223	AT3G57960 "AT3G57960" [Arabido	0.194	0.385	0.287	9e-06
TAIR|locus:2147730	326	AT5G20030 [Arabidopsis thalian	0.148	0.202	0.388	4.5e-05

TAIR|locus:2182345 EML3 "AT5G13020" [Arabidopsis thaliana (taxid:3702)]

 Score = 1268 (451.4 bits), Expect = 3.2e-129, P = 3.2e-129
 Identities = 254/402 (63%), Positives = 302/402 (75%)

Query:     1 MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
             MDY+ SDSSGTDDDLPPSH  R+QR  RPTGNGR +V+ SA L R+ N+M TQIH +EQ+
Sbjct:     1 MDYRPSDSSGTDDDLPPSHQGRYQRNARPTGNGRPSVLNSAPLSRVHNEMETQIHLIEQE 60

Query:    61 AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
             AYSS+LRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLS+VNAD++I RIREWRKA
Sbjct:    61 AYSSILRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNADEMIRRIREWRKA 120

Query:   121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
             + LQ    S+PQ VHD APSP VS SRKK KTSQS+ASL+ G PSP +HPS+QPSSSALR
Sbjct:   121 NSLQS---SVPQLVHD-APSPAVSGSRKKQKTSQSIASLAMGPPSPSLHPSMQPSSSALR 176

Query:   181 XXXXXXXXXXXXXXFSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPED 240
                            S      G +A R  +GA   N P E+ +Y+PL+GRKVWT+WP+D
Sbjct:   177 RGGPPPGPKTKKPKTSMQYPSTG-IAGRPQAGAL-TNEPGESGSYDPLVGRKVWTKWPDD 234

Query:   241 NHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISXXXXXX 300
             N +YEAVITDYNP EGRHALVYDIN+A+ETWEWVNLKEISP DI+WEG++PGIS      
Sbjct:   235 NQYYEAVITDYNPVEGRHALVYDINSANETWEWVNLKEISPGDIRWEGEDPGISRKGGHP 294

Query:   301 XXXXXXXXXLTXXXXXXXXXXXXXTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIKEVE 360
                                     +M+ ++  P +QNGIGKK LG+IEILHTETL+KEVE
Sbjct:   295 GQGRGTKTMARGGPASNAGGRGRGSMRMQQ--PKTQNGIGKKALGEIEILHTETLLKEVE 352

Query:   361 KVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLEDASDGES 402
             KVF + +P+P +VEKAKRVL++ ELAL++AIAKLE+ SDGES
Sbjct:   353 KVFGSVNPNPAEVEKAKRVLRDHELALMDAIAKLEEISDGES 394

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2050594 EML4 "AT2G44440" [Arabidopsis thaliana (taxid:3702)]

 Score = 483 (175.1 bits), Expect = 2.3e-93, Sum P(2) = 2.3e-93
 Identities = 102/183 (55%), Positives = 125/183 (68%)

Query:     1 MDYQLSDSSGTDDDLPPSHH----NRFQRGVRPTGNGRSAVIGSASLPRMQNDMAT---- 52
             MD + SDSSGTDDDLPPSH         RG R  GNGR   +   S P+M +D+A     
Sbjct:     1 MDCKSSDSSGTDDDLPPSHRVPRGGGGGRGGRVAGNGRPLNL-PPSYPKMYDDLAADMEA 59

Query:    53 QIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIIL 112
             QIH +E++AY SVLRAFKAQ DAI+WEKES+ITELRKEL +S+EEHRELL +VN+DD I 
Sbjct:    60 QIHQIEKEAYISVLRAFKAQGDAISWEKESVITELRKELSLSNEEHRELLGRVNSDDTIR 119

Query:   113 RIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSV 172
             RIREWR++ G+QP M +  Q VHD  PSP+VSAS K  K +Q + S    + SP  HP  
Sbjct:   120 RIREWRQSGGMQPSMRNAAQVVHDTLPSPSVSASMKTHKPNQPIPSQPFASSSPSFHPQA 179

Query:   173 QPS 175
              P+
Sbjct:   180 DPT 182

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099287 EML1 "AT3G12140" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 2.5e-83, Sum P(3) = 2.5e-83
 Identities = 75/114 (65%), Positives = 87/114 (76%)

Query:    50 MATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADD 109
             M TQIH +EQ+AY++VLRAFKAQSDAI+WEKESLITELRKELRVSD+EHRELLS+VN DD
Sbjct:     1 METQIHQLEQEAYTAVLRAFKAQSDAISWEKESLITELRKELRVSDDEHRELLSRVNKDD 60

Query:   110 IILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGA 163
              I RIR+WR+    Q    +  QP  D  PSPT SA+RKK KT  S  + S GA
Sbjct:    61 TIQRIRDWRQGGASQITRHATIQPF-DVLPSPTFSAARKKQKTFPSY-NPSIGA 112

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR|locus:2170179 EML2 "AT5G06780" [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 1.8e-72, Sum P(2) = 1.8e-72
 Identities = 96/195 (49%), Positives = 130/195 (66%)

Query:   216 ANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVN 275
             AN P+EA     LIGRKVWT+WPEDN FYEAV+T YN NEGRHALVYDINT +ETWEWV+
Sbjct:   128 ANEPAEA-----LIGRKVWTKWPEDNSFYEAVVTQYNANEGRHALVYDINTVNETWEWVD 182

Query:   276 LKEISPEDIKWEGDEPGISXXXXXXXXXXXXXXXLTXXXXXXXXXXXXXTMKPKKGFPFS 335
             L EI  +DI+W+G+E G++                                +P++    +
Sbjct:   183 LNEIPTKDIRWDGEEDGVTLNVGHGGGTTRG----NRRTLSHGGRGRGPRTQPRREHLAT 238

Query:   336 QNGIGKKPLGDIEILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLE 395
             +NG G+K  G+IE+ +T++L+KEVE+VF +N PDP +++KAK++LKE E AL+ AIA+L 
Sbjct:   239 ENGGGRKFFGEIELFNTDSLVKEVERVFDSNLPDPHELDKAKKLLKEHEQALIAAIARLT 298

Query:   396 DASDGESEQGEHQFS 410
             DASD ES+ GE  +S
Sbjct:   299 DASDYESD-GEEPYS 312

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2095868 AT3G57970 "AT3G57970" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
 Identities = 23/65 (35%), Positives = 39/65 (60%)

Query:   228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD--ETWEWVNLKEISPEDIK 285
             L+GR+V  + P+++ + E +IT Y+ N   H L+   +  D  +   WV+L+ +  ED+K
Sbjct:   201 LVGRRVHIQMPDEDEYIEFLITKYDANTETHHLLSAFSNKDYEDPCNWVDLRHVQAEDMK 260

Query:   286 W-EGD 289
             W EGD
Sbjct:   261 WPEGD 265

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2095858 AT3G57960 "AT3G57960" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 9.0e-06, Sum P(2) = 9.0e-06
 Identities = 27/94 (28%), Positives = 48/94 (51%)

Query:   205 VANRGSSGAFPANGPSEA-ATYNP--LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALV 261
             + N  +   F    P ++  + NP  LIG+ V  R P+   F E +I  Y+  +  H+L+
Sbjct:   114 LTNTATPSTFFVPKPVKSWGSVNPESLIGKWVSIRLPDKAKFTEYIIKAYDAEKEMHSLL 173

Query:   262 YDINTADET-----WEWVNLKEISPEDIKWEGDE 290
              + +   E      + W+++++ISP DI WEG +
Sbjct:   174 TETSNPMEVDCIDPFRWIDIRDISPNDIMWEGGQ 207

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2147730 AT5G20030 [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 4.5e-05, P = 4.5e-05
 Identities = 26/67 (38%), Positives = 40/67 (59%)

Query:    43 LPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELL 102
             +PR  ++ A  +H +E DAY S +    A    ITWE+E+ IT LR +L +S+EEH   +
Sbjct:   255 VPRKGSE-AADVHRLELDAYRSSIERLHASGPIITWEQETWITNLRLKLNISNEEHLMQI 313

Query:   103 SKVNADD 109
               + +DD
Sbjct:   314 RNLISDD 320


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.128   0.374    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      443       401   0.00098  117 3  11 23  0.37    35
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  264 KB (2139 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  40.90u 0.10s 41.00t   Elapsed:  00:00:02
  Total cpu time:  40.90u 0.10s 41.00t   Elapsed:  00:00:02
  Start:  Tue May 21 01:30:56 2013   End:  Tue May 21 01:30:58 2013

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	443
pfam03735	74	pfam03735, ENT, ENT domain	2e-35
smart00743	59	smart00743, Agenet, Tudor-like domain present in p	3e-05

>gnl|CDD|146396 pfam03735, ENT, ENT domain

 Score =  125 bits (316), Expect = 2e-35
 Identities = 45/73 (61%), Positives = 59/73 (80%)

Query: 50  MATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADD 109
           M  Q+H +E +AY++VLRAF+AQ DA++WEKE L+TELRKELR+SDEEHRELL +VN+D+
Sbjct: 1   MERQLHRLELEAYAAVLRAFRAQGDALSWEKEELLTELRKELRISDEEHRELLRRVNSDE 60

Query: 110 IILRIREWRKASG 122
            +L IRE R    
Sbjct: 61  RLLTIRENRSGGN 73

This presumed domain is named after Emsy N Terminus (ENT). Emsy is a protein that is amplified in breast cancer and interacts with BRCA2. The N terminus of this protein is found to be similar to other vertebrate and plant proteins of unknown function. This domain has a completely conserved histidine residue that may be functionally important. Length = 74

>gnl|CDD|214798 smart00743, Agenet, Tudor-like domain present in plant sequences

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD--ETWEWVNLKEISPEDI 284
             G +V      ++ ++EAV+T     +G++ + Y   +     T +W +L+   P   
Sbjct: 4   KEGDRVEVFS--EDSWWEAVVTKVL-GDGKYLVEYKGESEPLELTVDWSDLRPHPPWVD 59

Domain in plant sequences with possible chromatin-associated functions. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	443
KOG4675	273	consensus Uncharacterized conserved protein, conta	100.0
PF03735	73	ENT: ENT domain; InterPro: IPR005491 This entry re	99.93
PF09465	55	LBR_tudor: Lamin-B receptor of TUDOR domain; Inter	98.74
smart00743	61	Agenet Tudor-like domain present in plant sequence	98.16
smart00333	57	TUDOR Tudor domain. Domain of unknown function pre	96.5
PF09038	122	53-BP1_Tudor: Tumour suppressor p53-binding protei	95.62
cd04508	48	TUDOR Tudor domains are found in many eukaryotic o	94.61
PF06003	264	SMN: Survival motor neuron protein (SMN); InterPro	87.16
KOG3026	262	consensus Splicing factor SPF30 [RNA processing an	86.49
KOG4675	273	consensus Uncharacterized conserved protein, conta	83.82

>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]

Probab=100.00  E-value=1.2e-53  Score=413.79  Aligned_cols=263  Identities=43%  Similarity=0.705  Sum_probs=217.5

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHH-HHhhcCCC
Q 013406           46 MQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIRE-WRKASGLQ  124 (443)
Q Consensus        46 ~~~~~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~ISdeEH~~~l~~i~~De~I~~iRe-~r~~gg~q  124 (443)
                      .+++|+.+||+||++||++||+||+||+++||||||++||+||++|+||+|||+++++++.+|+.|.+||+ |+..+..|
T Consensus         4 s~~~~~~~~~~le~eaY~~vl~af~aq~d~iS~ek~~~~teLrk~l~Is~eeh~~~~r~~~~d~~~~~i~~n~~~~n~~q   83 (273)
T KOG4675|consen    4 SRDEMEAQLHRLELEAYASVLRAFKAQGDAISWEKEELLTELRKELNISDEEHRMLVRRAINDDLITRIRENSRGSNKSQ   83 (273)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHhhhhccCHHHHHHHHHHHhccHHHHHHHHhhcCCCchh
Confidence            56799999999999999999999999999999999999999999999999999999999999999999994 66555433


Q ss_pred             CCCCCCCCCCCCCCCCCcchhhhhhcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc----CCCC
Q 013406          125 PGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALRPGPPPGSKGKKPKSFS----TGLA  200 (443)
Q Consensus       125 ~g~~~~~q~~hd~~PsPt~s~srKkqKts~s~ps~~~g~psp~~~p~~qpsssa~k~g~~p~~k~kK~k~~s----~~~~  200 (443)
                      --.+ ......+..|+|+.+.++|+||+.++++++.+.+.+|+++|.+++.            +.+.+++++    ..++
T Consensus        84 e~~~-e~~~~~~i~p~~~~sta~kiqkn~~~~~a~~~~~~~ps~~~t~~~~------------~~~~a~pss~s~~~p~~  150 (273)
T KOG4675|consen   84 EWSG-EGRREWPIAPRPHPSTARKIQKNLLANKAIQHNAVLPSPIPTGPLT------------FNNTATPSSFSVPSPVS  150 (273)
T ss_pred             hhhh-hhhhccccCCCcCchhHHHhhccccchhhhhcccCCCCccccCCcc------------cCcccccccccCCCCCC
Confidence            2111 1223456779999999999999999999999999999999877774            222222221    1111


Q ss_pred             CCcccccCCCCCCCCCCCCCCcccCCccccceeecccCCCCCceeEEEee-cCCCCCceeeeecCCCccccchhhccccC
Q 013406          201 GRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITD-YNPNEGRHALVYDINTADETWEWVNLKEI  279 (443)
Q Consensus       201 g~~q~~~r~~~~~~~~~~~~~~~~~~~LIGrkV~~~WPdDn~wyEavItd-Yn~~tg~H~LvYD~~t~~ETwEWVdL~ei  279 (443)
                      .|+             +.++     .+||||||+++||+++.|||++||+ |+..++.|+|+||+++.+++|+||||++|
T Consensus       151 ~~~-------------n~pp-----~slvgr~v~~k~pdk~~~te~iit~~~~~~E~~~~l~~~~~~~~~p~~wvdl~~I  212 (273)
T KOG4675|consen  151 SWG-------------NVPP-----ESLVGRKVWIKWPDKRKFTEAIITQYDAEKEGHHLLVPDINDCNDPWEWVDLREI  212 (273)
T ss_pred             ccc-------------cCCc-----hhhccccccccCcccccccccccccchhhhhhhhhcccccccccCCccccccccC
Confidence            222             2233     5599999999999999999999999 77888999999999999999999999999


Q ss_pred             CccCccccCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013406          280 SPEDIKWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMKPKKGFPFSQNGIGKK  342 (443)
Q Consensus       280 sPedI~W~~e~pgi~~r~~~~g~g~g~~~~~~~~g~~~~~grgrg~~k~~k~~~~sqng~~~~  342 (443)
                      +||||+|+++++++..+.+++++|.|..+.+.+++.  ..+||+|..+ |+.+++.|||.+++
T Consensus       213 ~p~DIrw~g~~~~~~~~~~~~~~g~g~~~~t~~~~~--~~~~~~~~~~-~~~~~~~~ngg~~~  272 (273)
T KOG4675|consen  213 SPEDIRWEGGDPGNPVAPNHSKPGTGTFNTTRRTQS--PGARGRGPRT-RTGIPKTQNGGGRK  272 (273)
T ss_pred             CHHhccccCCCCCcccccCCCCCCcccccccCCccC--ccccCCCCcc-ccccccccCccccC
Confidence            999999999999999999999999999988877662  3345555444 78899999994443

>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin

Probab=99.93  E-value=2.2e-26  Score=186.88  Aligned_cols=72  Identities=57%  Similarity=0.932  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHHHhhcC
Q 013406           50 MATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASG  122 (443)
Q Consensus        50 ~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~ISdeEH~~~l~~i~~De~I~~iRe~r~~gg  122 (443)
                      |+++||+||++||++||+||+||++ |||+||.|||+||++|+||||||++++++|.+|+.|++||+|+++++
T Consensus         1 ~~~~l~~LE~eAY~svl~Af~Aqg~-lsweke~lLt~Lr~~L~IS~e~H~~~l~~~~~De~l~~ir~~~~~~~   72 (73)
T PF03735_consen    1 MERQLHRLELEAYSSVLRAFRAQGP-LSWEKEKLLTELRKELNISDEEHREELRRAVSDEQLKTIREWRQGGN   72 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHTT--HHHHHHHHHHHHH-HHHHHHHHHHH-SS
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHhccHHHHHHHHHhhcCC
Confidence            6899999999999999999999965 99999999999999999999999999999999999999999999874

Its interaction with BRCA2 suggests that it may play a central role in the DNA repair function of BRCA2 []. ; PDB: 1UZ3_B 1UTU_B 2FMM_E.

>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane

Probab=98.74  E-value=7.2e-09  Score=81.04  Aligned_cols=41  Identities=29%  Similarity=0.627  Sum_probs=34.7

Q ss_pred             cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcc
Q 013406          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (443)
Q Consensus       228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~  268 (443)
                      -+|++|+.+||+++-||||.|++||..+.+|.|.|++||..
T Consensus         7 ~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~DGtel   47 (55)
T PF09465_consen    7 AIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYEDGTEL   47 (55)
T ss_dssp             -SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETTS-EE
T ss_pred             cCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcCCCEE
Confidence            37899999999999999999999999999999999999984

It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.

>smart00743 Agenet Tudor-like domain present in plant sequences

Probab=98.16  E-value=2.6e-06  Score=65.25  Aligned_cols=54  Identities=26%  Similarity=0.395  Sum_probs=49.3

Q ss_pred             cccceeecccCCCCCceeEEEeecCCCCCceeeeecC--CCccccchhhccccCCcc
Q 013406          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDI--NTADETWEWVNLKEISPE  282 (443)
Q Consensus       228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~--~t~~ETwEWVdL~eisPe  282 (443)
                      .+|.+|..+|++++.||+|+|+.++. ++++.|.|+.  ...+|++++.+|+-+.|.
T Consensus         4 ~~G~~Ve~~~~~~~~W~~a~V~~~~~-~~~~~V~~~~~~~~~~e~v~~~~LRp~~~w   59 (61)
T smart00743        4 KKGDRVEVFSKEEDSWWEAVVTKVLG-DGKYLVRYLTESEPLKETVDWSDLRPHPPW   59 (61)
T ss_pred             CCCCEEEEEECCCCEEEEEEEEEECC-CCEEEEEECCCCcccEEEEeHHHcccCCCC
Confidence            47899999999999999999999999 7789999999  778899999999988764

Domain in plant sequences with possible chromatin-associated functions.

>smart00333 TUDOR Tudor domain

Probab=96.50  E-value=0.0051  Score=45.94  Aligned_cols=39  Identities=26%  Similarity=0.399  Sum_probs=34.4

Q ss_pred             ccccceeecccCCCCCceeEEEeecCCCCCceeeeecC-CCc
Q 013406          227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDI-NTA  267 (443)
Q Consensus       227 ~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~-~t~  267 (443)
                      .-+|..|..+| +|+.||.|+|+++++. +...|.|.+ ++.
T Consensus         3 ~~~G~~~~a~~-~d~~wyra~I~~~~~~-~~~~V~f~D~G~~   42 (57)
T smart00333        3 FKVGDKVAARW-EDGEWYRARIIKVDGE-QLYEVFFIDYGNE   42 (57)
T ss_pred             CCCCCEEEEEe-CCCCEEEEEEEEECCC-CEEEEEEECCCcc
Confidence            45788999999 9999999999999998 888888888 665

Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).

>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix

Probab=95.62  E-value=0.0083  Score=54.02  Aligned_cols=41  Identities=20%  Similarity=0.549  Sum_probs=34.0

Q ss_pred             CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCc
Q 013406          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTA  267 (443)
Q Consensus       226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~  267 (443)
                      .+|||++|-.+|-+++-||-|+|+.. ...++..|.+|+++.
T Consensus         2 ~~~iG~rV~AkWS~n~yyY~G~I~~~-~~~~kykv~FdDG~~   42 (122)
T PF09038_consen    2 SSFIGLRVFAKWSDNGYYYPGKITSD-KGKNKYKVLFDDGYE   42 (122)
T ss_dssp             --STT-EEEEESSTTSEEEEEEEEEE-ETTTEEEEEETTS-E
T ss_pred             CcccccEEEEEEccCCcccCceEeec-CCCCeEEEEecCCcc
Confidence            57999999999998888899999994 778999999999986

The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.

>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains

Probab=94.61  E-value=0.057  Score=39.01  Aligned_cols=38  Identities=18%  Similarity=0.443  Sum_probs=30.6

Q ss_pred             cceeecccCCCCCceeEEEeecCCCCCceeeeecC-CCcc
Q 013406          230 GRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDI-NTAD  268 (443)
Q Consensus       230 GrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~-~t~~  268 (443)
                      |..+..+|++|+.||.|+|+..++ ++.-.+.|.+ ++.+
T Consensus         1 G~~c~a~~~~d~~wyra~V~~~~~-~~~~~V~f~DyG~~~   39 (48)
T cd04508           1 GDLCLAKYSDDGKWYRAKITSILS-DGKVEVFFVDYGNTE   39 (48)
T ss_pred             CCEEEEEECCCCeEEEEEEEEECC-CCcEEEEEEcCCCcE
Confidence            456788999999999999999998 5666666666 6653

For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.

>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins

Probab=87.16  E-value=0.7  Score=45.98  Aligned_cols=52  Identities=27%  Similarity=0.521  Sum_probs=39.1

Q ss_pred             cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCCcc
Q 013406          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  282 (443)
Q Consensus       228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eisPe  282 (443)
                      -||-+++..|-+|..||+|+|+.-+...+.-.|+|+--.-.   |.|.|.+|=|.
T Consensus        70 kvGd~C~A~~s~Dg~~Y~A~I~~i~~~~~~~~V~f~gYgn~---e~v~l~dL~~~  121 (264)
T PF06003_consen   70 KVGDKCMAVYSEDGQYYPATIESIDEEDGTCVVVFTGYGNE---EEVNLSDLKPS  121 (264)
T ss_dssp             -TT-EEEEE-TTTSSEEEEEEEEEETTTTEEEEEETTTTEE---EEEEGGGEEET
T ss_pred             CCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEcccCCe---Eeeehhhhccc
Confidence            38899999999999999999999999999888888764322   45666666433

The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.

>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]

Probab=86.49  E-value=0.57  Score=46.87  Aligned_cols=36  Identities=28%  Similarity=0.556  Sum_probs=32.2

Q ss_pred             cccceeecccCCCCCceeEEEeecCCCCCceeeeec
Q 013406          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYD  263 (443)
Q Consensus       228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD  263 (443)
                      -||.||...|+||..||+|+|.+-.+.++.-+|.++
T Consensus        92 ~vg~K~~A~~~ddg~~y~AtIe~ita~~~~~ai~f~  127 (262)
T KOG3026|consen   92 KVGDKVQAVFSDDGQIYDATIEHITAMEGTVAIIFA  127 (262)
T ss_pred             ccCCEEEEeecCCCceEEeehhhccCCCCceeEEEe
Confidence            479999999999999999999999998887777654

>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]

Probab=83.82  E-value=13  Score=37.93  Aligned_cols=38  Identities=8%  Similarity=-0.218  Sum_probs=32.7

Q ss_pred             CCCCCcccCCccccceeecccCCCCCceeEEEeecCCC
Q 013406          217 NGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPN  254 (443)
Q Consensus       217 ~~~~~~~~~~~LIGrkV~~~WPdDn~wyEavItdYn~~  254 (443)
                      ....+++...+.+++.++..|+-|+++|+..+.-||..
T Consensus       173 ~~~te~iit~~~~~~E~~~~l~~~~~~~~~p~~wvdl~  210 (273)
T KOG4675|consen  173 RKFTEAIITQYDAEKEGHHLLVPDINDCNDPWEWVDLR  210 (273)
T ss_pred             ccccccccccchhhhhhhhhcccccccccCCccccccc
Confidence            34556777788999999999999999999999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	443
2fmm_E	133	Protein EMSY; ENT domain, chromo shadow domain, EM	6e-36
1uz3_A	102	EMSY protein; chromatin regulator, chromatin regul	8e-27
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08

>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1 Length = 133

 Score =  128 bits (322), Expect = 6e-36
 Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 11/133 (8%)

Query: 41  ASLPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRE 100
             L   +++    +  +E +AY+ V+ A +AQ D +T EK+ L+ EL K L +S E HR 
Sbjct: 1   GPLDLSRDECKRILRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSISTERHRA 59

Query: 101 LLSKVNADDIILRIR----------EWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKT 150
            + +   D+ +  I           EW         +     P      +    A+    
Sbjct: 60  EVRRAVNDERLTTIAHNMSGPNSSSEWSIEGRRLVPLMPRLVPQTAFTVTANAVANAAIQ 119

Query: 151 KTSQSVASLSTGA 163
             +       TG+
Sbjct: 120 HNASLPVPAETGS 132

>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A Length = 102

 Score =  102 bits (256), Expect = 8e-27
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 47  QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVN 106
           +++    +  +E +AY+ V+ A +AQ D +T EK+ L+ EL K L +S E HR  + +  
Sbjct: 15  RDECKRILRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSISTERHRAEVRRAV 73

Query: 107 ADDIILRIREWRKAS 121
            D+ +  I       
Sbjct: 74  NDERLTTIAHNMSGP 88

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 3e-08
 Identities = 54/345 (15%), Positives = 93/345 (26%), Gaps = 114/345 (33%)

Query: 3   YQLSDSSGTDDDLPPSHHNRFQ---------RGVRPT---------GNGRSAVIGSASL- 43
            Q       +      + +R Q           +RP          G+G++ V     L 
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 44  PRMQNDMATQIH--------SVE------QDAYSSVLRAFKAQSD---AITWEKESLITE 86
            ++Q  M  +I         S E      Q     +   + ++SD    I     S+  E
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 87  LRKELRVSDEEHRELLSKVNADDIILR-IREWR--KASGLQPGMPSIPQPVHDPAPSPTV 143
           LR+ L+   + +   L       ++L  ++  +   A  L                   +
Sbjct: 234 LRRLLK--SKPYENCL-------LVLLNVQNAKAWNAFNLS---------------CKIL 269

Query: 144 SASRKKTKTSQSVA-SLSTGAPSPGMHPSVQPSSSALRPGPPPGSKGKKPKSFSTGLAGR 202
             +R K      V   LS    +   H S+   S  L       +  +        L  R
Sbjct: 270 LTTRFK-----QVTDFLSAATTT---HISLDHHSMTL-------TPDEVKSLLLKYLDCR 314

Query: 203 GQVANRGSSGAFPANGPSEAATYNPL----IGRKV------WTRWPEDN-----HFYEAV 247
                       P + P E  T NP     I   +      W  W   N        E+ 
Sbjct: 315 ------------PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 248 ITDYNPNEGRH---ALV---YDINTADETWE--WVNLKEISPEDI 284
           +    P E R     L       +         W ++ +     +
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	443
1uz3_A	102	EMSY protein; chromatin regulator, chromatin regul	99.92
2fmm_E	133	Protein EMSY; ENT domain, chromo shadow domain, EM	99.9
2equ_A	74	PHD finger protein 20-like 1; tudor domain, struct	97.28
2l8d_A	66	Lamin-B receptor; DNA binding protein; NMR {Gallus	97.02
2dig_A	68	Lamin-B receptor; tudor domain, integral nuclear e	96.99
1mhn_A	59	SurviVal motor neuron protein; SMN, SMA, spinal mu	96.78
4a4f_A	64	SurviVal of motor neuron-related-splicing factor;	96.52
1g5v_A	88	SurviVal motor neuron protein 1; mRNA processing,	96.22
3p8d_A	67	Medulloblastoma antigen MU-MB-50.72; tudor domain,	96.15
2ldm_A	81	Uncharacterized protein; PHF20, tudor domain, epig	95.06
2g3r_A	123	Tumor suppressor P53-binding protein 1; tandem tud	95.95
2d9t_A	78	Tudor domain-containing protein 3; structural geno	95.93
3qii_A	85	PHD finger protein 20; tudor domain, structural ge	95.91
3pnw_C	77	Tudor domain-containing protein 3; FAB, structural	95.84
3s6w_A	54	Tudor domain-containing protein 3; methylated argi	95.4
2eqj_A	66	Metal-response element-binding transcription facto	95.06
1ssf_A	156	Transformation related protein 53 binding protein	95.03
2eqk_A	85	Tudor domain-containing protein 4; structural geno	92.99
2eko_A	87	Histone acetyltransferase htatip; chromo domain, h	92.08
2m0o_A	79	PHD finger protein 1; tudor domain, H3K36ME3 bindi	91.72
2diq_A	110	Tudor and KH domain-containing protein; tudor doma	91.64
3fdr_A	94	Tudor and KH domain-containing protein; TDRD2, str	91.4
4hcz_A	58	PHD finger protein 1; protein-peptide complex, tud	90.11
2xk0_A	69	Polycomb protein PCL; transcription, aromatic CAGE	88.73
2wac_A	218	CG7008-PA; unknown function, tudor, beta-barrel, n	86.04
2e5q_A	63	PHD finger protein 19; tudor domain, isoform B, st	85.51
3ntk_A	169	Maternal protein tudor; tudor domain, OB-fold, GER	85.33
2rnz_A	94	Histone acetyltransferase ESA1; HAT, chromodomain,	84.19
2ro0_A	92	Histone acetyltransferase ESA1; HAT, chromodomain,	82.87

>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A

Probab=99.92  E-value=4.3e-25  Score=187.96  Aligned_cols=74  Identities=28%  Similarity=0.435  Sum_probs=70.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHHHhhc
Q 013406           47 QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKAS  121 (443)
Q Consensus        47 ~~~~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~ISdeEH~~~l~~i~~De~I~~iRe~r~~g  121 (443)
                      .++++.+||+||++||++||+||+||+ +||||||+|||+||++||||||||+++|+++.+|+.|++||++..+.
T Consensus        15 ~~e~~~~l~~LEleAY~svlrAf~AqG-~Lsweke~LLt~LR~~L~IS~eeH~~elrr~~sDe~l~~Ire~~~g~   88 (102)
T 1uz3_A           15 RDECKRILRKLELEAYAGVISALRAQG-DLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGP   88 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCHHHHHHHHHHHCS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhcchHHHHHHHHHhcCC
Confidence            359999999999999999999999995 59999999999999999999999999999999999999999998765

>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1

Probab=99.90  E-value=8.7e-24  Score=186.95  Aligned_cols=73  Identities=29%  Similarity=0.439  Sum_probs=69.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHHHhh
Q 013406           47 QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA  120 (443)
Q Consensus        47 ~~~~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~ISdeEH~~~l~~i~~De~I~~iRe~r~~  120 (443)
                      .++++.+||+||++||++||+||+||+ +||||||+|||+||++||||||||+++|+++.+|+.|++||++..+
T Consensus         7 ~~e~~~~lr~LEleAY~svl~Af~AqG-~LSweke~LLt~LR~~L~IS~eeH~~elrr~~sDe~l~~I~~~~~g   79 (133)
T 2fmm_E            7 RDECKRILRKLELEAYAGVISALRAQG-DLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSG   79 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhHHHHHHHHHhhcC
Confidence            458999999999999999999999995 5999999999999999999999999999999999999999998743

>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.28  E-value=0.00043  Score=55.69  Aligned_cols=55  Identities=20%  Similarity=0.424  Sum_probs=47.7

Q ss_pred             CCccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCCcc
Q 013406          225 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  282 (443)
Q Consensus       225 ~~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eisPe  282 (443)
                      ...-||-+|..+|. |+.||+|+|+..+.. +...++|++. -.|+-...+|+-|+++
T Consensus         8 ~~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~-~~~~V~f~Dy-n~e~v~~~~lrplp~~   62 (74)
T 2equ_A            8 FDFKAGEEVLARWT-DCRYYPAKIEAINKE-GTFTVQFYDG-VIRCLKRMHIKAMPED   62 (74)
T ss_dssp             CCCCTTCEEEEECS-SSSEEEEEEEEESTT-SSEEEEETTS-CEEEECGGGEECCCGG
T ss_pred             CCCCCCCEEEEECC-CCCEEEEEEEEECCC-CEEEEEEecC-CeEEecHHHCeeCChh
Confidence            35678999999999 999999999999875 8899999999 7788888888888653

>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}

Probab=97.02  E-value=0.00049  Score=54.82  Aligned_cols=40  Identities=28%  Similarity=0.448  Sum_probs=37.2

Q ss_pred             ccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcc
Q 013406          229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (443)
Q Consensus       229 IGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~  268 (443)
                      ||-.|+-|||-|+.||+|.||+++..+-.+.+.|-.+|.+
T Consensus        12 vgd~VmaRW~Gd~~yYparI~Si~s~~~~Y~V~fKdgT~e   51 (66)
T 2l8d_A           12 DGEVVMGRWPGSVLYYEVQVTSYDDASHLYTVKYKDGTEL   51 (66)
T ss_dssp             SSCEEEEECTTSSCEEEEEEEEEETTTTEEEEEETTSCEE
T ss_pred             cCCEEEEEcCCCccceEEEEEEeccCCceEEEEecCCCEE
Confidence            6789999999999999999999999999999999997765

>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1

Probab=96.99  E-value=0.00049  Score=55.05  Aligned_cols=41  Identities=24%  Similarity=0.358  Sum_probs=37.4

Q ss_pred             cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcc
Q 013406          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (443)
Q Consensus       228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~  268 (443)
                      -||-.|+-|||-|+.||+|.||+++..+-.+.+.|-.+|.+
T Consensus        14 ~vgd~VmaRW~Gd~~yYparItSits~~~~Y~VkfKdgT~e   54 (68)
T 2dig_A           14 ADGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKDGTEL   54 (68)
T ss_dssp             CSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTTSCEE
T ss_pred             ecCCEEEEEccCCccceEEEEEEeccCCceEEEEecCCCEE
Confidence            36789999999999999999999999999999999997765

>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*

Probab=96.78  E-value=0.0016  Score=49.37  Aligned_cols=54  Identities=24%  Similarity=0.297  Sum_probs=42.8

Q ss_pred             ccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCCcc
Q 013406          229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  282 (443)
Q Consensus       229 IGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eisPe  282 (443)
                      +|-.+..+|.+|+.||.|+|+..+...+...+.|.+---.|+=..-+|+.+++|
T Consensus         6 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~Lr~~~~~   59 (59)
T 1mhn_A            6 VGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICE   59 (59)
T ss_dssp             TTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCTTCC
T ss_pred             cCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHHeeCCCCC
Confidence            677899999999999999999998878889999977444455556666666553

>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*

Probab=96.52  E-value=0.004  Score=47.96  Aligned_cols=54  Identities=30%  Similarity=0.427  Sum_probs=42.2

Q ss_pred             cCCccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccc
Q 013406          224 TYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLK  277 (443)
Q Consensus       224 ~~~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~  277 (443)
                      ....-+|-.+..+|.+|+.||.|+|+..+.+.+...+.|..---.|+=.+-+|+
T Consensus         6 ~~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~~Lr   59 (64)
T 4a4f_A            6 THSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLK   59 (64)
T ss_dssp             SSCCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGEE
T ss_pred             CCCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHHHcE
Confidence            346678999999999999999999999998888899999875444443333333

>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1

Probab=96.22  E-value=0.005  Score=50.93  Aligned_cols=54  Identities=22%  Similarity=0.265  Sum_probs=43.1

Q ss_pred             CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccC
Q 013406          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI  279 (443)
Q Consensus       226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~ei  279 (443)
                      ..-||-.|..+|.+|+.||.|+|+..+...+...|+|..---.|+-..-+|+-+
T Consensus        10 ~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~~Lrp~   63 (88)
T 1g5v_A           10 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSP   63 (88)
T ss_dssp             CCCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGGGCBCC
T ss_pred             CCCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHHHcccC
Confidence            456788999999999999999999999887889999976555555555555544

>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}

Probab=96.15  E-value=0.0051  Score=48.97  Aligned_cols=40  Identities=25%  Similarity=0.412  Sum_probs=35.3

Q ss_pred             CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCc
Q 013406          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTA  267 (443)
Q Consensus       226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~  267 (443)
                      .=.||-+|..+| .|+.||+|.|+..+.. +.+.++|+.++.
T Consensus         6 ~~~vGd~vmArW-~D~~yYpA~I~si~~~-~~Y~V~F~dG~~   45 (67)
T 3p8d_A            6 EFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVV   45 (67)
T ss_dssp             CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCE
T ss_pred             ccccCCEEEEEc-CCCCEeeEEEEEECCC-CeEEEEEeCCce
Confidence            335889999999 9999999999999988 789999999665

>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}

Probab=95.06  E-value=0.001  Score=54.75  Aligned_cols=49  Identities=24%  Similarity=0.457  Sum_probs=38.3

Q ss_pred             cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccC
Q 013406          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI  279 (443)
Q Consensus       228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~ei  279 (443)
                      -+|-+|..+|. |+.||.|+|+..+. .+...++|+++ -.|+-.+-+|+-+
T Consensus         8 kvGd~clAkws-Dg~wY~A~I~~v~~-~~~y~V~F~DG-n~E~V~~s~LrPl   56 (81)
T 2ldm_A            8 QINEQVLASWS-DSRFYPAKVTAVNK-DGTYTVKFYDG-VVQTVKHIHVKAF   56 (81)
Confidence            46889999999 99999999999985 46899999884 4455555555544

>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A

Probab=95.95  E-value=0.0033  Score=55.37  Aligned_cols=43  Identities=26%  Similarity=0.505  Sum_probs=37.8

Q ss_pred             CCccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcc
Q 013406          225 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (443)
Q Consensus       225 ~~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~  268 (443)
                      ..++||.+|..+|+++..||-|+|+.+ ...+++.|.+|++...
T Consensus         3 ~~~~~G~rV~AkWsdn~~yYpG~V~~~-~~~~ky~V~FdDg~~~   45 (123)
T 2g3r_A            3 MNSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYEC   45 (123)
T ss_dssp             --CCTTCEEEEECTTTCCEEEEEEEEE-EETTEEEEEETTSCEE
T ss_pred             CccccceEEEEEeccCCcCcccEEEEe-ccCCeEEEEEcCCCee
Confidence            368999999999998889999999984 7889999999999974

>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1

Probab=95.93  E-value=0.016  Score=46.31  Aligned_cols=57  Identities=19%  Similarity=0.198  Sum_probs=47.7

Q ss_pred             CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCCcc
Q 013406          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  282 (443)
Q Consensus       226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eisPe  282 (443)
                      ..-+|..+..+|.+|+.||.|+|+..+...+...|.|-+---.|+=..-+|+.|+++
T Consensus         9 ~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~~Lr~l~~~   65 (78)
T 2d9t_A            9 VWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTE   65 (78)
T ss_dssp             CCCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEECCCC
T ss_pred             CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHHHeEeCCHH
Confidence            467889999999999999999999998877888888877666667777788888765

>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}

Probab=95.91  E-value=0.0074  Score=50.14  Aligned_cols=40  Identities=25%  Similarity=0.412  Sum_probs=36.2

Q ss_pred             CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCc
Q 013406          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTA  267 (443)
Q Consensus       226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~  267 (443)
                      .=.||-+|..+| .|+.||.|.|+..+.. +.+.+.|+.++.
T Consensus        21 ~f~vGd~VlArW-~D~~yYPAkI~sV~~~-~~YtV~F~DG~~   60 (85)
T 3qii_A           21 EFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVV   60 (85)
T ss_dssp             CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCE
T ss_pred             ccccCCEEEEEe-CCCCEeeEEEEEECCC-CeEEEEEeCCCe
Confidence            557899999999 9999999999999987 789999999665

>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}

Probab=95.84  E-value=0.0082  Score=48.17  Aligned_cols=57  Identities=21%  Similarity=0.182  Sum_probs=45.0

Q ss_pred             CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCCcc
Q 013406          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  282 (443)
Q Consensus       226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eisPe  282 (443)
                      ..-+|-.+..+|.+|+.||.|+|+..+...+...|.|-+---.|+=..-+|+.|+++
T Consensus        17 ~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~~Lr~l~~~   73 (77)
T 3pnw_C           17 MWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTE   73 (77)
T ss_dssp             TCCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEGGGEECC---
T ss_pred             CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHHHeEECChh
Confidence            356788999999999999999999999877888888877555667677777877765

>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*

Probab=95.40  E-value=0.016  Score=42.87  Aligned_cols=39  Identities=18%  Similarity=0.264  Sum_probs=31.1

Q ss_pred             ccceeecccCCCCCceeEEEeecCCCCCceeeeecC-CCc
Q 013406          229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDI-NTA  267 (443)
Q Consensus       229 IGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~-~t~  267 (443)
                      +|-.+..+|.+|+.||.|+|+..+...+...+.|.+ ++.
T Consensus         4 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~   43 (54)
T 3s6w_A            4 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNY   43 (54)
T ss_dssp             TTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTTCCE
T ss_pred             CCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEccCCe
Confidence            577888999999999999999999877778888865 443

>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}

Probab=95.06  E-value=0.013  Score=46.67  Aligned_cols=49  Identities=27%  Similarity=0.519  Sum_probs=43.6

Q ss_pred             cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCCc
Q 013406          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  281 (443)
Q Consensus       228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eisP  281 (443)
                      -||.-|..+| .|.-||+|+|+.-|..+|.-.|.|.+++.-    ||..++|.+
T Consensus        15 ~vGddVLA~w-tDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~----w~~~kdi~~   63 (66)
T 2eqj_A           15 EEGQDVLARW-SDGLFYLGTIKKINILKQSCFIIFEDSSKS----WVLWKDIQT   63 (66)
T ss_dssp             CTTCEEEEEC-TTSCEEEEEEEEEETTTTEEEEEETTTEEE----EEETTTEEC
T ss_pred             cCCCEEEEEE-ccCcEEEeEEEEEccCCcEEEEEEccCCEE----EEEeecccc
Confidence            5788899999 999999999999999999999999999875    887777744

>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1

Probab=95.03  E-value=0.018  Score=52.42  Aligned_cols=42  Identities=26%  Similarity=0.519  Sum_probs=38.4

Q ss_pred             CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcc
Q 013406          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (443)
Q Consensus       226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~  268 (443)
                      +++||.+|..+|.+++.||-|+|+.+ ...+++.+.+|++...
T Consensus         8 ~~~iG~rVfArWsd~~yyYpG~V~~~-~~~~~Y~V~FdDG~~k   49 (156)
T 1ssf_A            8 NSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYEC   49 (156)
T ss_dssp             CCSTTCEEEECSSCSSEEEEEEEEEC-CTTTEEEEECTTSCEE
T ss_pred             cchhccEEEEEcCCCCcccccEEEEe-ccCCEEEEEEcCCCee
Confidence            67999999999999999999999996 6778899999999975

>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.99  E-value=0.08  Score=43.99  Aligned_cols=58  Identities=10%  Similarity=0.070  Sum_probs=48.4

Q ss_pred             cCCccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCCcc
Q 013406          224 TYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  282 (443)
Q Consensus       224 ~~~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eisPe  282 (443)
                      ....-+|.-|..+.+++|.||.|.|..-...+--|-+.||.|+.+ +--|-+|+.++|.
T Consensus        19 ~~~~k~g~~vaak~~d~n~WyRakV~~v~~~~~veVl~~DyGn~~-~V~~~~LR~L~~~   76 (85)
T 2eqk_A           19 PVKWENDMHCAVKIQDKNQWRRGQIIRMVTDTLVEVLLYDVGVEL-VVNVDCLRKLEEN   76 (85)
T ss_dssp             CCCCCSSCEEEEECSSSCCEEEEEEEEECSSSEEEEECTTTCCEE-EEETTTEEECCHH
T ss_pred             ccCccCCCEEEEEeCCCCeEEEEEEEEecCCCeEEEEEEccCCEE-EEEccccccCCHH
Confidence            446677888999999999999999999999999999999999974 4456677777544

>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.08  E-value=0.21  Score=41.26  Aligned_cols=65  Identities=15%  Similarity=0.154  Sum_probs=48.1

Q ss_pred             CccccceeecccC---CCCCceeEEEeecCCCCC--ceeeeecCCCccccchhhccccCCccCccccCCCC
Q 013406          226 NPLIGRKVWTRWP---EDNHFYEAVITDYNPNEG--RHALVYDINTADETWEWVNLKEISPEDIKWEGDEP  291 (443)
Q Consensus       226 ~~LIGrkV~~~WP---dDn~wyEavItdYn~~tg--~H~LvYD~~t~~ETwEWVdL~eisPedI~W~~e~p  291 (443)
                      .--||-||..+++   .++.||+|.|.+-+...+  ++-|-|.--+.. --|||....|.-..++|...++
T Consensus         9 ~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~g~NkR-lDEWV~~~rl~~~~~~~p~~~~   78 (87)
T 2eko_A            9 EIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYIDFNRR-LDEWVTHERLDLKKIQFPKKEA   78 (87)
T ss_dssp             SCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEECSSCSC-CCEEECTTTBCGGGCCCCCCSC
T ss_pred             cccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeCCCCcc-cccccCHhHcccccccCCCCCC
Confidence            4568999999997   589999999999887543  566677654432 2379999998777788875433

>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}

Probab=91.72  E-value=0.62  Score=38.28  Aligned_cols=51  Identities=24%  Similarity=0.386  Sum_probs=43.9

Q ss_pred             CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCCc
Q 013406          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  281 (443)
Q Consensus       226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eisP  281 (443)
                      .=-+|.-|-.+| .|.-||-|+|+.-|...+...|.|++++.-    ||..++|.+
T Consensus        26 ~f~eGeDVLarw-sDGlfYLGTI~kV~~~~e~ClV~F~D~S~~----W~~~kdi~~   76 (79)
T 2m0o_A           26 RLWEGQDVLARW-TDGLLYLGTIKKVDSAREVCLVQFEDDSQF----LVLWKDISP   76 (79)
T ss_dssp             CCCTTCEEEBCC-TTSCCCEEEEEEEETTTTEEEEEETTSCEE----EEETTTBCC
T ss_pred             eeccCCEEEEEe-cCCCEEeEEEEEeccCCCEEEEEEcCCCeE----EEEeecccc
Confidence            445788899999 669999999999999999999999999986    888888754

>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1

Probab=91.64  E-value=0.55  Score=38.84  Aligned_cols=56  Identities=16%  Similarity=0.233  Sum_probs=39.7

Q ss_pred             CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCCcc
Q 013406          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  282 (443)
Q Consensus       226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eisPe  282 (443)
                      ..-+|.-+-.+|.+|+.||.|+|+..... +.-.|.|-+---.|+-.+-+|+.+.++
T Consensus        32 ~~~~G~~c~a~~~~d~~wyRA~V~~~~~~-~~~~V~fvDyGn~e~v~~~~Lr~l~~~   87 (110)
T 2diq_A           32 TVHVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVDFGDNGDCPLKDLRALRSD   87 (110)
T ss_dssp             CCCTTCEEEECCTTTCSCEEEEECCCCSS-SCEEEEETTTCCEEEECGGGCEECCHH
T ss_pred             CCCCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEeCCCeEEEehHHhhcCcHH
Confidence            45688889999999999999999999874 444455544333355556666766554

>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1

Probab=91.40  E-value=0.21  Score=40.24  Aligned_cols=54  Identities=17%  Similarity=0.298  Sum_probs=38.0

Q ss_pred             CccccceeecccCCCCCceeEEEeecCCCCCceeeee-cCCCccccchhhccccCCc
Q 013406          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVY-DINTADETWEWVNLKEISP  281 (443)
Q Consensus       226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvY-D~~t~~ETwEWVdL~eisP  281 (443)
                      ..-+|.-+-.+|++|+.||.|.|+.... ++.-.|.| |.|+. |+-..-+|+.+.+
T Consensus        27 ~~~~G~~c~a~~~~d~~wyRA~I~~~~~-~~~~~V~fvDyGn~-e~v~~~~lr~l~~   81 (94)
T 3fdr_A           27 TVHVGDIVAAPLPTNGSWYRARVLGTLE-NGNLDLYFVDFGDN-GDCPLKDLRALRS   81 (94)
T ss_dssp             CCCTTCEEEEEETTTTEEEEEEEEEECT-TSCEEEEETTTCCE-EEECGGGCEECCG
T ss_pred             CCCCCCEEEEEECCCCeEEEEEEEEECC-CCeEEEEEEcCCCe-EEEEHHHhhhcCH
Confidence            4568889999999999999999999975 34455555 44443 4444555666654

>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}

Probab=90.11  E-value=0.23  Score=38.77  Aligned_cols=49  Identities=22%  Similarity=0.403  Sum_probs=41.8

Q ss_pred             cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCCc
Q 013406          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  281 (443)
Q Consensus       228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eisP  281 (443)
                      -+|..|-.+|-| .-||-|+|..-|...+...+.+++++.-    ||-+++|.+
T Consensus         5 ~~GedVLarwsD-G~fYlGtI~~V~~~~~~clV~F~D~s~~----W~~~kdi~~   53 (58)
T 4hcz_A            5 WEGQDVLARWTD-GLLYLGTIKKVDSAREVCLVQFEDDSQF----LVLWKDISP   53 (58)
T ss_dssp             CTTCEEEEECTT-SCEEEEEEEEEETTTTEEEEEETTSCEE----EEEGGGEEE
T ss_pred             ccCCEEEEEecC-CCEEeEEEEEEecCCCEEEEEEcCCCeE----EEEhHHccc
Confidence            357789999966 9999999999999999999999999975    777776644

>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}

Probab=88.73  E-value=0.74  Score=37.02  Aligned_cols=48  Identities=15%  Similarity=0.374  Sum_probs=36.0

Q ss_pred             CCccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccC
Q 013406          225 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI  279 (443)
Q Consensus       225 ~~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~ei  279 (443)
                      ..=.+|.-|-.+|-| .-||-|+|++-  .++.-.|.|++++.-    ||-+++|
T Consensus        14 ~~~~~geDVL~rw~D-G~fYLGtIVd~--~~~~ClV~FeD~S~~----Wv~~kdi   61 (69)
T 2xk0_A           14 VTYALQEDVFIKCND-GRFYLGTIIDQ--TSDQYLIRFDDQSEQ----WCEPDKL   61 (69)
T ss_dssp             CCCCTTCEEEEECTT-SCEEEEEEEEE--CSSCEEEEETTCCEE----EECTTTE
T ss_pred             cccccCCeEEEEecC-CCEEEEEEEec--CCceEEEEecCCcce----eeeHHHH
Confidence            345678899999965 99999999874  467777888999875    6654443

>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}

Probab=86.04  E-value=0.75  Score=41.04  Aligned_cols=55  Identities=22%  Similarity=0.301  Sum_probs=40.5

Q ss_pred             CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCCcc
Q 013406          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  282 (443)
Q Consensus       226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eisPe  282 (443)
                      .+-+|..+-.+|.+|+.||.|+|+....  +.-.+.|-+---.|+..+-+|+.++++
T Consensus        51 ~~~~g~~c~a~~~~d~~wyRa~V~~v~~--~~~~V~~vDyG~~~~v~~~~l~~l~~~  105 (218)
T 2wac_A           51 TPKRGDLVAAQFTLDNQWYRAKVERVQG--SNATVLYIDYGNKETLPTNRLAALPPA  105 (218)
T ss_dssp             CCCTTCEEEEECTTTCCEEEEEEEEEET--TEEEEEETTTCCEEEEEGGGEEECCGG
T ss_pred             cCCcCCEEEEEECCCCeEEEEEEEEecC--CeEEEEEEecCCeEEEchHHcccCChh
Confidence            3557888999999999999999999876  555555544333356667778887654

>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.51  E-value=0.78  Score=36.30  Aligned_cols=51  Identities=24%  Similarity=0.448  Sum_probs=41.8

Q ss_pred             cccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCCccC
Q 013406          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPED  283 (443)
Q Consensus       228 LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eisPed  283 (443)
                      .+|.-|-.+| .|.-||-|+|+.-|...+.-.+.|.+++.-    ||..++|.+-.
T Consensus         9 ~eGqdVLarW-sDGlfYlgtV~kV~~~~~~ClV~FeD~s~~----wv~~kdi~~~~   59 (63)
T 2e5q_A            9 TEGQYVLCRW-TDGLYYLGKIKRVSSSKQSCLVTFEDNSKY----WVLWKDIQHAG   59 (63)
T ss_dssp             CTTCEEEEEC-TTSCEEEEEECCCCSTTSEEEEEETTSCEE----EEEGGGEECCS
T ss_pred             ecCCEEEEEe-cCCCEEEEEEEEEecCCCEEEEEEccCcee----EEEeecccccC
Confidence            4677888999 568999999999999888888888888875    88777775543

>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*

Probab=85.33  E-value=0.4  Score=42.49  Aligned_cols=53  Identities=19%  Similarity=0.333  Sum_probs=38.0

Q ss_pred             CccccceeecccCCCCCceeEEEeecCCCCCceeeee-cCCCccccchhhccccCCcc
Q 013406          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVY-DINTADETWEWVNLKEISPE  282 (443)
Q Consensus       226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvY-D~~t~~ETwEWVdL~eisPe  282 (443)
                      ..-+|..+-.+|++|+.||.|.|+...+.. .-.+.| |.|+.+.   +=+|+.+.++
T Consensus        47 ~~~~G~~c~A~~~~d~~wyRa~I~~~~~~~-~~~V~fvDyGn~~~---v~~lr~l~~~  100 (169)
T 3ntk_A           47 DLKEGALCVAQFPEDEVFYRAQIRKVLDDG-KCEVHFIDFGNNAV---TQQFRQLPEE  100 (169)
T ss_dssp             CCCTTCEEEEEETTTTEEEEEEEEEECSTT-CEEEEETTTTEEEE---ESCEECCCHH
T ss_pred             CCCCCCEEEEEECCCCcEEEEEEEEECCCC-EEEEEEEecCCeEE---hhhhhccCHH
Confidence            345677888999999999999999998854 445555 6666544   3466666543

>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}

Probab=84.19  E-value=2.7  Score=35.24  Aligned_cols=58  Identities=16%  Similarity=0.284  Sum_probs=42.0

Q ss_pred             cccceeecccCCCCCceeEEEeecCCCCC--ceeeeecCCCccccchhhccccCCcc-CccccC
Q 013406          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEG--RHALVYDINTADETWEWVNLKEISPE-DIKWEG  288 (443)
Q Consensus       228 LIGrkV~~~WPdDn~wyEavItdYn~~tg--~H~LvYD~~t~~ETwEWVdL~eisPe-dI~W~~  288 (443)
                      -||-+|..++  ++.||+|.|.+-....+  ++-|-|.--+.. --|||....|.-. +++|..
T Consensus        27 ~vG~kv~v~~--~~~~yeAeIl~ir~~~g~~~YYVHY~g~NkR-lDEWV~~~RI~l~~~v~~p~   87 (94)
T 2rnz_A           27 IIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYNKR-LDEWITTDRINLDKEVLYPK   87 (94)
T ss_dssp             CTTEEEEEEC--SSCEEEEEEEEEECSSSSCEEEEECTTSCST-TCEEEETTTBCSSSCCCCCC
T ss_pred             cCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCcc-cccccCHHHcccccCccCCC
Confidence            5899999997  88999999988665443  566666554432 2469999888655 477764

>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}

Probab=82.87  E-value=0.86  Score=37.97  Aligned_cols=58  Identities=16%  Similarity=0.272  Sum_probs=41.6

Q ss_pred             cccceeecccCCCCCceeEEEeecCCCC--CceeeeecCCCccccchhhccccCCcc-CccccC
Q 013406          228 LIGRKVWTRWPEDNHFYEAVITDYNPNE--GRHALVYDINTADETWEWVNLKEISPE-DIKWEG  288 (443)
Q Consensus       228 LIGrkV~~~WPdDn~wyEavItdYn~~t--g~H~LvYD~~t~~ETwEWVdL~eisPe-dI~W~~  288 (443)
                      -||-+|..++  ++.||+|.|.+-+...  -++.|-|.--+.. --|||....|.-. +++|..
T Consensus        25 ~vG~kv~v~~--~~~~y~AkIl~ir~~~~~~~YyVHY~g~NkR-lDEWV~~~rl~l~~~v~~p~   85 (92)
T 2ro0_A           25 IIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYNKR-LDEWITTDRINLDKEVLYPK   85 (92)
T ss_dssp             CTTCEEEEEE--TTEEEEEEEEEEECSSSSCEEEEEETTSCTT-SCEEEEGGGEETTSCEEECC
T ss_pred             cCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCcc-cccccCHhHcccccCccCCC
Confidence            4888999987  8899999999866544  3566667654432 2379998888554 477764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	443
d1uz3a1	90	a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [T	1e-26
d1mhna_	59	b.34.9.1 (A:) Survival motor neuron protein 1, smn	7e-04
d2d9ta1	60	b.34.9.1 (A:8-67) Tudor domain-containing protein	0.002
d2diqa1	97	b.34.9.1 (A:8-104) Tudor and KH domain-containing	0.003

>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All alpha proteins
fold: ENT-like
superfamily: ENT-like
family: Emsy N terminal (ENT) domain-like
domain: Emsy
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (251), Expect = 1e-26
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 48  NDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNA 107
           ++    +  +E +AY+ V+ A +AQ D +T EK+ L+ EL K L +S E HR  + +   
Sbjct: 4   DECKRILRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSISTERHRAEVRRAVN 62

Query: 108 DDIILRIREWRKASG 122
           D+ +  I        
Sbjct: 63  DERLTTIAHNMSGPN 77

>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Survival motor neuron protein 1, smn
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 7e-04
 Identities = 13/54 (24%), Positives = 17/54 (31%)

Query: 229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282
           +G K    W ED   Y A I   +       +VY      E     +L     E
Sbjct: 6   VGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICE 59

>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor domain-containing protein 3, TDRD3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.4 bits (79), Expect = 0.002
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 13/61 (21%)

Query: 232 KVW-------TRWPEDNHFYEAVITDYNPNEGRHALVYDI---NTADETWEWVNLKEISP 281
           KVW         + EDN FY A +   +   G  A+V      N   E     N+K +  
Sbjct: 1   KVWKPGDECFALYWEDNKFYRAEVEALHS-SGMTAVVKFTDYGNY--EEVLLSNIKPVQT 57

Query: 282 E 282
           E
Sbjct: 58  E 58

>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor and KH domain-containing protein TDRKH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (80), Expect = 0.003
 Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 1/63 (1%)

Query: 220 SEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI 279
           S        +G  V    P +  +Y A +     N G   L +     +      +L+ +
Sbjct: 19  SVPEDLTVHVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVDFGDNGDCPLKDLRAL 77

Query: 280 SPE 282
             +
Sbjct: 78  RSD 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	443
d1uz3a1	90	Emsy {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2d9ta1	60	Tudor domain-containing protein 3, TDRD3 {Mouse (M	96.1
d1mhna_	59	Survival motor neuron protein 1, smn {Human (Homo	96.03
d2diga1	55	Lamin-b receptor {Human (Homo sapiens) [TaxId: 960	96.01
d2g3ra1	53	p53-binding protein 1, 53BP1 {Human (Homo sapiens)	89.92
d2hqxa1	90	P100 co-activator, SND1 {Human (Homo sapiens) [Tax	89.72
d2diqa1	97	Tudor and KH domain-containing protein TDRKH {Huma	89.51
d1wgsa_	133	Probable histone acetyltransferase MYST1 {Mouse (M	81.67

>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: ENT-like
superfamily: ENT-like
family: Emsy N terminal (ENT) domain-like
domain: Emsy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.3e-24  Score=176.93  Aligned_cols=73  Identities=29%  Similarity=0.434  Sum_probs=69.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHHHhhc
Q 013406           48 NDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKAS  121 (443)
Q Consensus        48 ~~~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~ISdeEH~~~l~~i~~De~I~~iRe~r~~g  121 (443)
                      ++|...||+||++||++||+||+||+ +|||+||+|||+||++|+||||||+++|+++.+|+.|++||++.++.
T Consensus         4 ~e~~~~lR~LEleAY~svl~Af~Aqg-~lsweke~lLt~LR~~L~IS~eeHr~elrr~~~De~l~~I~e~~~G~   76 (90)
T d1uz3a1           4 DECKRILRKLELEAYAGVISALRAQG-DLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGP   76 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhccHHHHHHHHHHhcCC
Confidence            58899999999999999999999995 59999999999999999999999999999999999999999998765

>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor domain-containing protein 3, TDRD3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.10  E-value=0.0032  Score=46.08  Aligned_cols=53  Identities=19%  Similarity=0.249  Sum_probs=39.1

Q ss_pred             ccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCCc
Q 013406          229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  281 (443)
Q Consensus       229 IGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eisP  281 (443)
                      ||-.+..+|++|+.||.|+|+..++..+...+.|.+---.|+=.=-+|+.|++
T Consensus         5 vG~~c~A~~~~D~~wYRA~I~~i~~~~~~~~V~fvDYGn~e~v~~~~lr~l~~   57 (60)
T d2d9ta1           5 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQT   57 (60)
T ss_dssp             TTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEECCC
T ss_pred             cCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEECCCCEEEEcHHHcCcCCC
Confidence            67788999999999999999999998888888886644443333334444444

>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Survival motor neuron protein 1, smn
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0037  Score=45.80  Aligned_cols=52  Identities=23%  Similarity=0.305  Sum_probs=40.1

Q ss_pred             ccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCC
Q 013406          229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEIS  280 (443)
Q Consensus       229 IGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eis  280 (443)
                      ||-.+..+|.+|+.||.|+|+..++.++.-.+.|-+---.|+=..-||+.+.
T Consensus         6 vG~~C~A~~s~Dg~wYRA~I~~v~~~~~~~~V~fvDYGn~e~V~~~~l~~~~   57 (59)
T d1mhna_           6 VGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPI   57 (59)
T ss_dssp             TTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCTT
T ss_pred             cCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEeCCCEEEEEHHHCcCCC
Confidence            7889999999999999999999988887777777666555554444554443

>d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Lamin-b receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0025  Score=47.13  Aligned_cols=41  Identities=27%  Similarity=0.397  Sum_probs=38.2

Q ss_pred             ccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccc
Q 013406          229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADE  269 (443)
Q Consensus       229 IGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~E  269 (443)
                      .|.-|+.|||-.+=|||-.|..||..+-++.+.|.++|+-|
T Consensus         8 ~Ge~vm~RwPgSsLyyev~vls~d~~~~~YtV~ykDGTele   48 (55)
T d2diga1           8 DGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKDGTELE   48 (55)
T ss_dssp             SSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTTSCEEE
T ss_pred             CCcEEEeecCCCceEEEEEEEeecCcceEEEEEecCCceee
Confidence            56789999999999999999999999999999999999853

>d2g3ra1 b.34.9.1 (A:1485-1537) p53-binding protein 1, 53BP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: p53-binding protein 1, 53BP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.92  E-value=0.11  Score=37.52  Aligned_cols=41  Identities=24%  Similarity=0.541  Sum_probs=36.7

Q ss_pred             ccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCcc
Q 013406          227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (443)
Q Consensus       227 ~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~  268 (443)
                      ++||-+|-.+|....-||.+.||. |...|+..|.+|++-+-
T Consensus         1 sfvglrvvakwssn~yfysg~i~r-d~g~~r~rl~fdd~~ec   41 (53)
T d2g3ra1           1 SFVGLRVVAKWSSNGYFYSGKITR-DVGAGKYKLLFDDGYEC   41 (53)
T ss_dssp             CCTTCEEEEECTTTCCEEEEEEEE-EEETTEEEEEETTSCEE
T ss_pred             CceeEEEEEEeecCCEEEeeEEeh-hcCCceEEEEecCCcEE
Confidence            478999999999999999999996 67789999999998764

>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: P100 co-activator, SND1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.72  E-value=0.16  Score=39.12  Aligned_cols=56  Identities=20%  Similarity=0.352  Sum_probs=37.1

Q ss_pred             CCccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCCcc
Q 013406          225 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  282 (443)
Q Consensus       225 ~~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eisPe  282 (443)
                      ..+-+|--+-.+| .||.||.|+|+..+....-.....|.|+.+ +=.+-+|+.+.++
T Consensus        24 ~~p~~G~~c~a~~-~D~~wyRa~V~~~~~~~~~~V~~vDyG~~~-~v~~~~l~~l~~~   79 (90)
T d2hqxa1          24 YAPRRGEFCIAKF-VDGEWYRARVEKVESPAKIHVFYIDYGNRE-VLPSTRLGTLSPA   79 (90)
T ss_dssp             CCCCTTCEEEEEC-TTSCEEEEEEEEEEETTEEEEEETTTCCEE-EECGGGEECCCGG
T ss_pred             cCCCCCCEEEEEE-cCCCEEEEEEEEeCCCCeEEEEEEeCCCCE-EEEHHHeeECCHH
Confidence            3456788899999 489999999999875433233334777653 4445566666543

>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor and KH domain-containing protein TDRKH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.51  E-value=0.15  Score=38.81  Aligned_cols=55  Identities=15%  Similarity=0.207  Sum_probs=36.2

Q ss_pred             CccccceeecccCCCCCceeEEEeecCCCCCceeeeecCCCccccchhhccccCCc
Q 013406          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  281 (443)
Q Consensus       226 ~~LIGrkV~~~WPdDn~wyEavItdYn~~tg~H~LvYD~~t~~ETwEWVdL~eisP  281 (443)
                      ..-||..+-.+|++|+.||.|+|+..+....-.....|.|+. |+-.+-+|+.+.+
T Consensus        25 ~~~~G~~~~a~~~~d~~wyRa~V~~~~~~~~~~V~~vDyG~~-~~v~~~~l~~l~~   79 (97)
T d2diqa1          25 TVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDN-GDCPLKDLRALRS   79 (97)
T ss_dssp             CCCTTCEEEECCTTTCSCEEEEECCCCSSSCEEEEETTTCCE-EEECGGGCEECCH
T ss_pred             CCCCCCEEEEEECCCCeEEEEEEEEECCCCEEEEEEEeeCCE-EEEeHHHhhccCH
Confidence            345788899999999999999999997643333333466654 3334444444433

>d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo barrel domain
domain: Probable histone acetyltransferase MYST1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.67  E-value=0.98  Score=37.70  Aligned_cols=52  Identities=23%  Similarity=0.330  Sum_probs=36.3

Q ss_pred             ccccceeecccCCCCCceeEEEee--cCCCCC--ceeeeecCCCccccchhhccccCC
Q 013406          227 PLIGRKVWTRWPEDNHFYEAVITD--YNPNEG--RHALVYDINTADETWEWVNLKEIS  280 (443)
Q Consensus       227 ~LIGrkV~~~WPdDn~wyEavItd--Yn~~tg--~H~LvYD~~t~~ETwEWVdL~eis  280 (443)
                      =-||-+|..+|+| +.||+|.|.+  ++...+  ++.|-|+--+.. --|||....|.
T Consensus        13 ~~vG~~~~v~~~d-g~~~~AkVl~~r~~~~~~~~~yyVHY~g~n~r-~DEWV~~~ri~   68 (133)
T d1wgsa_          13 VEIGETYLCRRPD-STWHSAEVIQSRVNDQEGREEFYVHYVGFNRR-LDEWVDKNRLA   68 (133)
T ss_dssp             CCTTSEEEEEETT-TEEEEEEEEEEEEETTTTEEEEEEECTTTCSS-CCEEECTTTSC
T ss_pred             EecCCEEEEEeCC-CCEeEEEEEEEEecccCCCeEEEEEccCCccc-cceecCHHHcc
Confidence            4689999999985 6899999976  444443  356666544432 33699988774