Citrus Sinensis ID: 013439

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440---
MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRTGPYGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPTGLSMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAAAEEEEEYDEEADEN
cccEEEEEEccccccccccEEEEcccccccccccccccccccccccccccEEccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccEEEEccccccccccHHHHHHHHHHcccccccEEEEEEccccccccccccccccccccccccccEEEEEcHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccccccHHHHHcccccccccccccccccccccccccccccccHHHHHHHHccccccEEccccccccHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccEEEEccccccccccEEEEcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHcccc
ccEEEEEEEcccccHHHHHHHHHHHHHccccccccccccccccHcHEEEEEEccccccEccEEEEEEcccccHHHEcccccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccHHHHHHHHHHHHHccccccEEEEEEcccccccEEEccccHEEEHHHHEccccEEEEEccHHHHHHHHHHccccccccccHHHHHHHHHHHHcEEEcccccccccHHHHHHHccccccEcccccccccccccccHHHHHccHHHHHHHHccHHHHHHHcccccccEEEEEEEEcccccHHHHHHHHHHHHcccccEEEEccccccEEEEEccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHccccc
MREILHIQagqcgnqiggKFWEVVcdehgidptgnyvgnsqvQLERVNVYfneasggrhvpravlmdlepgtmdslrtgpygqifrpdnfvfgqngagnnwakghytegAELIDSVLDVVRKEAencdclqgfqichslgggtgsgmGTLLISKIReeypdrmmmtfsvfpspkvsdtvvepynATLSVHQLVENadecmvldnealYDICFRTlkltnpsfgdlnHLISTTMSgvtcclrfpgqlnsDLRKLAVnlipfprlhffmvgfapltargsqqyraltIPELTQQMWDSknmmcaadprhgryltaSAMFRGKMSTKEVDEQMINVQNKNSSYFVEwiphnvkssvcdipptglsmsstfmgnsTSIQEMFRRVSEQFTVMFKRKAFLHWytgegmdemEFTEAESNMNDLVSEYQQYQEAAAEEEEEYDEEADEN
mreilhiqagqcgnqigGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFneasggrhvprAVLMDLEPGTMDSLRTGPYGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHslgggtgsgmGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPTGLSMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAAAEEEEEYDEEADEN
MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRTGPYGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHslgggtgsgmgtllISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPTGLSMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVSeyqqyqeaaaeeeeeydeeadeN
***ILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRTGPYGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQQMWDSKNMMCAADPRHGRYLTASAMF************MINVQNKNSSYFVEWIPHNVKSSVCDIPPTGLS***TFMG**TSIQEMFRRVSEQFTVMFKRKAFLHWYTGEG*****************************************
*REILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRTGPYGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPTGLSMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ*****************
MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRTGPYGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPTGLSMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ*******************
MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRTGPYGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPTGLSMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAA**************
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MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRTGPYGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPTGLSMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTGEGMDEMExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query443 2.2.26 [Sep-21-2011]
Q9ZPN9448 Tubulin beta-2 chain OS=E N/A no 0.995 0.984 0.925 0.0
P18025446 Tubulin beta-1 chain OS=Z N/A no 0.970 0.964 0.916 0.0
Q41783446 Tubulin beta-6 chain OS=Z N/A no 0.970 0.964 0.939 0.0
P93176447 Tubulin beta chain OS=Hor N/A no 0.970 0.961 0.939 0.0
Q6VAF5444 Tubulin beta-7 chain OS=G N/A no 0.970 0.968 0.939 0.0
P45960447 Tubulin beta-4 chain OS=O yes no 0.970 0.961 0.939 0.0
P29514449 Tubulin beta-6 chain OS=A yes no 0.970 0.957 0.937 0.0
Q9ZPN7446 Tubulin beta-4 chain OS=E N/A no 0.970 0.964 0.939 0.0
Q43594447 Tubulin beta-1 chain OS=O yes no 0.970 0.961 0.939 0.0
Q9ZRB1447 Tubulin beta-2 chain OS=T N/A no 0.970 0.961 0.937 0.0
>sp|Q9ZPN9|TBB2_ELEIN Tubulin beta-2 chain OS=Eleusine indica GN=TUBB2 PE=2 SV=1 Back     alignment and function desciption
 Score =  843 bits (2178), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/441 (92%), Positives = 426/441 (96%)

Query: 1   MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHV 60
           MREILHIQ GQCGNQIG KFWEVVCDEHGIDPTG Y G S +QLERVNVY+NEAS GR V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSLRTGPYGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDS+RTGPYGQIFRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQ+CHSLGGGTGSGMGTLLISKIREEYPDRMM+TFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCL 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT PSFGDLNHLIS TMSGVTCCL
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240

Query: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQQMWDSKNMM 300
           RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT+RGSQQYRALT+PELTQQMWD+KNMM
Sbjct: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 300

Query: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPTG 360
           CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIP+NVKSSVCDIPP G
Sbjct: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRG 360

Query: 361 LSMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
           LSM+STF+GNSTSIQEMFRRVSEQFT MF+RKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 361 LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420

Query: 421 EYQQYQEAAAEEEEEYDEEAD 441
           EYQQYQ+A A+E+ EY++E D
Sbjct: 421 EYQQYQDATADEDGEYEDELD 441
Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.
Eleusine indica (taxid: 29674)
>sp|P18025|TBB1_MAIZE Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=1 Back     alignment and function description
>sp|Q41783|TBB6_MAIZE Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=1 Back     alignment and function description
>sp|P93176|TBB_HORVU Tubulin beta chain OS=Hordeum vulgare GN=TUBB PE=2 SV=1 Back     alignment and function description
>sp|Q6VAF5|TBB7_GOSHI Tubulin beta-7 chain OS=Gossypium hirsutum PE=2 SV=1 Back     alignment and function description
>sp|P45960|TBB4_ORYSJ Tubulin beta-4 chain OS=Oryza sativa subsp. japonica GN=TUBB4 PE=2 SV=1 Back     alignment and function description
>sp|P29514|TBB6_ARATH Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TUBB6 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZPN7|TBB4_ELEIN Tubulin beta-4 chain OS=Eleusine indica GN=TUBB4 PE=2 SV=1 Back     alignment and function description
>sp|Q43594|TBB1_ORYSJ Tubulin beta-1 chain OS=Oryza sativa subsp. japonica GN=TUBB1 PE=2 SV=2 Back     alignment and function description
>sp|Q9ZRB1|TBB2_WHEAT Tubulin beta-2 chain OS=Triticum aestivum GN=TUBB2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query443
224053905444 tubulin, beta chain [Populus trichocarpa 0.990 0.988 0.956 0.0
255537469445 tubulin beta chain, putative [Ricinus co 0.970 0.966 0.974 0.0
224074921444 tubulin, beta chain [Populus trichocarpa 0.970 0.968 0.972 0.0
23452315444 beta-tubulin 1 [Gossypium hirsutum] 1.0 0.997 0.941 0.0
356513395446 PREDICTED: tubulin beta-1 chain-like [Gl 0.993 0.986 0.941 0.0
225426414444 PREDICTED: tubulin beta-1 chain [Vitis v 0.961 0.959 0.967 0.0
356528292445 PREDICTED: tubulin beta-1 chain-like [Gl 0.970 0.966 0.951 0.0
449495803445 PREDICTED: tubulin beta-1 chain-like [Cu 0.961 0.957 0.960 0.0
357520449445 Tubulin beta chain [Medicago truncatula] 0.970 0.966 0.946 0.0
8928425448 RecName: Full=Tubulin beta-2 chain; AltN 0.995 0.984 0.925 0.0
>gi|224053905|ref|XP_002298036.1| tubulin, beta chain [Populus trichocarpa] gi|222845294|gb|EEE82841.1| tubulin, beta chain [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  864 bits (2233), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/439 (95%), Positives = 433/439 (98%)

Query: 1   MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHV 60
           MREILH+QAGQCGNQIGGKFWEVVCDEHGIDPTGNY GNS VQLERVNVY+NEASGGR+V
Sbjct: 1   MREILHVQAGQCGNQIGGKFWEVVCDEHGIDPTGNYAGNSNVQLERVNVYYNEASGGRYV 60

Query: 61  PRAVLMDLEPGTMDSLRTGPYGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDSLRTGPYGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSLRTGPYGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMM+TFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCL 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLIS TMSGVTCCL
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISATMSGVTCCL 240

Query: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQQMWDSKNMM 300
           RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT++ SQQYRALTIPELTQQMWD+KNMM
Sbjct: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSQVSQQYRALTIPELTQQMWDAKNMM 300

Query: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPTG 360
           CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIP+NVKSSVCDIPPTG
Sbjct: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTG 360

Query: 361 LSMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
           L+MSSTFMGNSTSIQEMF+RVSEQFTVMF+RKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 361 LAMSSTFMGNSTSIQEMFKRVSEQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420

Query: 421 EYQQYQEAAAEEEEEYDEE 439
           EYQQYQ+AAA+ E EYDEE
Sbjct: 421 EYQQYQDAAADNEGEYDEE 439

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255537469|ref|XP_002509801.1| tubulin beta chain, putative [Ricinus communis] gi|223549700|gb|EEF51188.1| tubulin beta chain, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224074921|ref|XP_002304492.1| tubulin, beta chain [Populus trichocarpa] gi|222841924|gb|EEE79471.1| tubulin, beta chain [Populus trichocarpa] Back     alignment and taxonomy information
>gi|23452315|gb|AAN32988.1| beta-tubulin 1 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|356513395|ref|XP_003525399.1| PREDICTED: tubulin beta-1 chain-like [Glycine max] Back     alignment and taxonomy information
>gi|225426414|ref|XP_002273514.1| PREDICTED: tubulin beta-1 chain [Vitis vinifera] Back     alignment and taxonomy information
>gi|356528292|ref|XP_003532738.1| PREDICTED: tubulin beta-1 chain-like [Glycine max] Back     alignment and taxonomy information
>gi|449495803|ref|XP_004159949.1| PREDICTED: tubulin beta-1 chain-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357520449|ref|XP_003630513.1| Tubulin beta chain [Medicago truncatula] gi|355524535|gb|AET04989.1| Tubulin beta chain [Medicago truncatula] Back     alignment and taxonomy information
>gi|8928425|sp|Q9ZPN9.1|TBB2_ELEIN RecName: Full=Tubulin beta-2 chain; AltName: Full=Beta-2-tubulin gi|4415992|gb|AAD20179.1| beta-tubulin 2 [Eleusine indica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query443
TAIR|locus:2177003449 TUB6 "beta-6 tubulin" [Arabido 0.948 0.935 0.907 2.6e-212
TAIR|locus:2172254450 TUB2 "tubulin beta chain 2" [A 0.948 0.933 0.895 4.4e-210
TAIR|locus:2172214450 TUB3 "tubulin beta chain 3" [A 0.948 0.933 0.895 4.4e-210
TAIR|locus:505006632449 TUB8 "tubulin beta 8" [Arabido 0.948 0.935 0.895 4e-209
TAIR|locus:2043082449 TUB7 "tubulin beta-7 chain" [A 0.948 0.935 0.892 2.8e-208
TAIR|locus:2005724447 TUB1 "tubulin beta-1 chain" [A 0.948 0.939 0.876 1.2e-207
TAIR|locus:2133084444 TUB9 "tubulin beta-9 chain" [A 0.948 0.945 0.878 6.7e-207
TAIR|locus:2158755444 TUB4 "tubulin beta chain 4" [A 0.948 0.945 0.876 1.4e-206
TAIR|locus:2198661449 TUB5 "tubulin beta-5 chain" [A 0.948 0.935 0.864 1.1e-204
GENEDB_PFALCIPARUM|PF10_0084445 PF10_0084 "tubulin beta chain, 0.948 0.943 0.833 6.8e-198
TAIR|locus:2177003 TUB6 "beta-6 tubulin" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2052 (727.4 bits), Expect = 2.6e-212, P = 2.6e-212
 Identities = 381/420 (90%), Positives = 396/420 (94%)

Query:     1 MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHV 60
             MREILHIQ GQCGNQIG KFWEVVCDEHGIDPTG YVGNS +QLERVNVY+NEAS GR+V
Sbjct:     1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60

Query:    61 PRAVLMDLEPGTMDSLRTGPYGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVV 120
             PRA+LMDLEPGTMDS+RTGPYGQIFRPDNFVFGQ+GAGNNWAKGHYTEGAELID+VLDVV
Sbjct:    61 PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query:   121 RKEAENCDCLQGFQICHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDTVV 180
             RKEAENCDCLQGFQ+CH              ISKIREEYPDRMM+TFSVFPSPKVSDTVV
Sbjct:   121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query:   181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCL 240
             EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT PSFGDLNHLIS TMSGVTCCL
Sbjct:   181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240

Query:   241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQQMWDSKNMM 300
             RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT+RGSQQYRALT+PELTQQMWDSKNMM
Sbjct:   241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMM 300

Query:   301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPTG 360
             CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIP+NVKSSVCDI P G
Sbjct:   301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPRG 360

Query:   361 LSMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
             LSM+STF+GNSTSIQEMFRRVSEQFT MF+RKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct:   361 LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
GO:0003924 "GTPase activity" evidence=IEA
GO:0005198 "structural molecule activity" evidence=IEA
GO:0005525 "GTP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005874 "microtubule" evidence=IEA
GO:0006184 "GTP catabolic process" evidence=IEA
GO:0007017 "microtubule-based process" evidence=IEA;ISS
GO:0007018 "microtubule-based movement" evidence=IEA
GO:0043234 "protein complex" evidence=IEA
GO:0051258 "protein polymerization" evidence=IEA
GO:0009409 "response to cold" evidence=IEP
GO:0005200 "structural constituent of cytoskeleton" evidence=ISS
GO:0015630 "microtubule cytoskeleton" evidence=ISS
GO:0005886 "plasma membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP;RCA
GO:0000271 "polysaccharide biosynthetic process" evidence=RCA
GO:0006084 "acetyl-CoA metabolic process" evidence=RCA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006833 "water transport" evidence=RCA
GO:0006972 "hyperosmotic response" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009266 "response to temperature stimulus" evidence=RCA
GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA
GO:0009825 "multidimensional cell growth" evidence=RCA
GO:0009932 "cell tip growth" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
GO:0010817 "regulation of hormone levels" evidence=RCA
GO:0016126 "sterol biosynthetic process" evidence=RCA
GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
GO:0048767 "root hair elongation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
TAIR|locus:2172254 TUB2 "tubulin beta chain 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172214 TUB3 "tubulin beta chain 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006632 TUB8 "tubulin beta 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043082 TUB7 "tubulin beta-7 chain" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005724 TUB1 "tubulin beta-1 chain" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133084 TUB9 "tubulin beta-9 chain" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158755 TUB4 "tubulin beta chain 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198661 TUB5 "tubulin beta-5 chain" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF10_0084 PF10_0084 "tubulin beta chain, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q40665TBB3_ORYSJNo assigned EC number0.91860.97060.9641yesno
Q41785TBB8_MAIZENo assigned EC number0.93700.96830.9640N/Ano
P29514TBB6_ARATHNo assigned EC number0.93720.97060.9576yesno
P29517TBB9_ARATHNo assigned EC number0.91120.96610.9639nono
P29516TBB8_ARATHNo assigned EC number0.92550.97060.9576nono
Q41783TBB6_MAIZENo assigned EC number0.93950.97060.9641N/Ano
P37392TBB1_LUPALNo assigned EC number0.92550.97060.9619N/Ano
Q8H7U1TBB2_ORYSJNo assigned EC number0.92090.97060.9619yesno
Q56YW9TBB2_ARATHNo assigned EC number0.92550.97060.9555nono
Q9ZPN7TBB4_ELEINNo assigned EC number0.93950.97060.9641N/Ano
P11482TBB1_VOLCANo assigned EC number0.89760.97060.9706N/Ano
Q9ZRA8TBB5_WHEATNo assigned EC number0.93250.97060.9619N/Ano
P29515TBB7_ARATHNo assigned EC number0.92110.97290.9599yesno
P93176TBB_HORVUNo assigned EC number0.93950.97060.9619N/Ano
Q76FS2TBB8_ORYSJNo assigned EC number0.92750.96610.9596nono
P45960TBB4_ORYSJNo assigned EC number0.93950.97060.9619yesno
Q41784TBB7_MAIZENo assigned EC number0.92090.97060.9662N/Ano
Q76FS3TBB6_ORYSJNo assigned EC number0.93910.96380.9617yesno
Q9ZPP0TBB1_ELEINNo assigned EC number0.91860.97060.9662N/Ano
P12460TBB2_SOYBNNo assigned EC number0.92090.97060.9576nono
P29500TBB1_PEANo assigned EC number0.91160.97060.9555N/Ano
Q6VAF8TBB3_GOSHINo assigned EC number0.93160.95710.9860N/Ano
P24636TBB4_ARATHNo assigned EC number0.90690.97060.9684nono
P12411TBB1_ARATHNo assigned EC number0.90710.97060.9619nono
P29502TBB3_PEANo assigned EC number0.94060.95030.9568N/Ano
Q40106TBB2_LUPALNo assigned EC number0.92550.97060.9598N/Ano
P29501TBB2_PEANo assigned EC number0.91350.96610.9574N/Ano
O04386TBB_CHLINNo assigned EC number0.89530.97060.9706N/Ano
Q6VAF5TBB7_GOSHINo assigned EC number0.93950.97060.9684N/Ano
P46264TBB2_SOLTUNo assigned EC number0.90950.96610.9469N/Ano
P46265TBB5_ORYSJNo assigned EC number0.91620.97060.9619yesno
Q9ASR0TBB3_ARATHNo assigned EC number0.92550.97060.9555nono
P18025TBB1_MAIZENo assigned EC number0.91620.97060.9641N/Ano
P18026TBB2_MAIZENo assigned EC number0.94170.96830.9662N/Ano
Q39697TBB2_DAUCANo assigned EC number0.90.99320.9909N/Ano
P37832TBB7_ORYSJNo assigned EC number0.91350.96610.9639yesno
Q43695TBB3_MAIZENo assigned EC number0.91390.97060.9662N/Ano
Q43697TBB5_MAIZENo assigned EC number0.93930.96830.9640N/Ano
Q9ZPN8TBB3_ELEINNo assigned EC number0.91860.97060.9641N/Ano
Q9ZPN9TBB2_ELEINNo assigned EC number0.92510.99540.9843N/Ano
P46263TBB1_SOLTUNo assigned EC number0.90950.96610.9490N/Ano
P04690TBB_CHLRENo assigned EC number0.89760.97060.9706N/Ano
Q43594TBB1_ORYSJNo assigned EC number0.93950.97060.9619yesno
Q6VAF6TBB6_GOSHINo assigned EC number0.90500.97060.9555N/Ano
Q6VAF7TBB5_GOSHINo assigned EC number0.90740.97510.9707N/Ano
Q6VAF4TBB9_GOSHINo assigned EC number0.90970.97510.9707N/Ano
Q9ZRB1TBB2_WHEATNo assigned EC number0.93720.97060.9619N/Ano
Q9ZRB2TBB1_WHEATNo assigned EC number0.93500.97290.9685N/Ano
Q9ZRB0TBB3_WHEATNo assigned EC number0.93020.97060.9662N/Ano
P12459TBB1_SOYBNNo assigned EC number0.93480.97060.9662yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
PLN00220447 PLN00220, PLN00220, tubulin beta chain; Provisiona 0.0
cd02187425 cd02187, beta_tubulin, The tubulin superfamily inc 0.0
PTZ00010445 PTZ00010, PTZ00010, tubulin beta chain; Provisiona 0.0
COG5023443 COG5023, COG5023, Tubulin [Cytoskeleton] 0.0
cd06059382 cd06059, Tubulin, The tubulin superfamily includes 1e-174
cd02186434 cd02186, alpha_tubulin, The tubulin superfamily in 1e-161
PTZ00335448 PTZ00335, PTZ00335, tubulin alpha chain; Provision 1e-157
PLN00221450 PLN00221, PLN00221, tubulin alpha chain; Provision 1e-148
cd00286328 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ 1e-144
cd02188431 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit 1e-130
PLN00222454 PLN00222, PLN00222, tubulin gamma chain; Provision 1e-115
cd02190379 cd02190, epsilon_tubulin, The tubulin superfamily 1e-109
PTZ00387465 PTZ00387, PTZ00387, epsilon tubulin; Provisional 1e-105
pfam00091210 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase do 4e-80
smart00864192 smart00864, Tubulin, Tubulin/FtsZ family, GTPase d 3e-74
cd02189446 cd02189, delta_tubulin, The tubulin superfamily in 7e-73
pfam03953126 pfam03953, Tubulin_C, Tubulin C-terminal domain 1e-67
smart00865120 smart00865, Tubulin_C, Tubulin/FtsZ family, C-term 9e-22
cd02202349 cd02202, FtsZ_type2, FtsZ is a GTPase that is simi 4e-09
cd06060493 cd06060, misato, Human Misato shows similarity wit 6e-08
cd02191303 cd02191, FtsZ, FtsZ is a GTPase that is similar to 0.001
TIGR00065349 TIGR00065, ftsZ, cell division protein FtsZ 0.002
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional Back     alignment and domain information 
 Score = 1009 bits (2611), Expect = 0.0
 Identities = 407/442 (92%), Positives = 429/442 (97%)

Query: 1   MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHV 60
           MREILHIQ GQCGNQIG KFWEVVCDEHGIDPTG Y G+S +QLER+NVY+NEASGGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYV 60

Query: 61  PRAVLMDLEPGTMDSLRTGPYGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDS+R+GPYGQIFRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQ+CHSLGGGTGSGMGTLLISKIREEYPDRMM+TFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCL 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT PSFGDLNHLIS TMSGVTCCL
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240

Query: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQQMWDSKNMM 300
           RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT+RGSQQYRALT+PELTQQMWD+KNMM
Sbjct: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 300

Query: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPTG 360
           CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIP+NVKSSVCDIPP G
Sbjct: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKG 360

Query: 361 LSMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
           L M+STF+GNSTSIQEMFRRVSEQFT MF+RKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 361 LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420

Query: 421 EYQQYQEAAAEEEEEYDEEADE 442
           EYQQYQ+A A+EE EY++E +E
Sbjct: 421 EYQQYQDATADEEGEYEDEEEE 442

Length = 447
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional Back     alignment and domain information
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional Back     alignment and domain information
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain Back     alignment and domain information
>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>gnl|CDD|100024 cd06060, misato, Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>gnl|CDD|100020 cd02191, FtsZ, FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>gnl|CDD|232805 TIGR00065, ftsZ, cell division protein FtsZ Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 443
COG5023443 Tubulin [Cytoskeleton] 100.0
PLN00221450 tubulin alpha chain; Provisional 100.0
PTZ00010445 tubulin beta chain; Provisional 100.0
PTZ00335448 tubulin alpha chain; Provisional 100.0
PLN00220447 tubulin beta chain; Provisional 100.0
PLN00222454 tubulin gamma chain; Provisional 100.0
cd02188431 gamma_tubulin Gamma-tubulin is a ubiquitous phylog 100.0
cd02187425 beta_tubulin The tubulin superfamily includes five 100.0
cd02186434 alpha_tubulin The tubulin superfamily includes fiv 100.0
PTZ00387465 epsilon tubulin; Provisional 100.0
KOG1374448 consensus Gamma tubulin [Cytoskeleton] 100.0
cd02190379 epsilon_tubulin The tubulin superfamily includes f 100.0
cd02189446 delta_tubulin The tubulin superfamily includes fiv 100.0
cd06059382 Tubulin The tubulin superfamily includes five dist 100.0
KOG1376407 consensus Alpha tubulin [Cytoskeleton] 100.0
KOG1375369 consensus Beta tubulin [Cytoskeleton] 100.0
cd00286328 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin 100.0
cd06060493 misato Human Misato shows similarity with Tubulin/ 100.0
PF00091216 Tubulin: Tubulin/FtsZ family, GTPase domain; Inter 100.0
smart00864192 Tubulin Tubulin/FtsZ family, GTPase domain. This d 100.0
KOG2530483 consensus Members of tubulin/FtsZ family [Cytoskel 100.0
cd02202349 FtsZ_type2 FtsZ is a GTPase that is similar to the 99.97
cd02191303 FtsZ FtsZ is a GTPase that is similar to the eukar 99.94
TIGR00065349 ftsZ cell division protein FtsZ. This family consi 99.92
cd02201304 FtsZ_type1 FtsZ is a GTPase that is similar to the 99.91
PF03953126 Tubulin_C: Tubulin C-terminal domain; InterPro: IP 99.9
PRK13018378 cell division protein FtsZ; Provisional 99.89
PF14881180 Tubulin_3: Tubulin domain 99.87
PRK09330384 cell division protein FtsZ; Validated 99.84
PF10644115 Misat_Tub_SegII: Misato Segment II tubulin-like do 99.58
COG0206338 FtsZ Cell division GTPase [Cell division and chrom 99.32
smart00865120 Tubulin_C Tubulin/FtsZ family, C-terminal domain. 98.42
PF13809345 Tubulin_2: Tubulin like 97.33
>COG5023 Tubulin [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=4e-132  Score=949.23  Aligned_cols=433  Identities=53%  Similarity=1.019  Sum_probs=423.0

Q ss_pred             CeeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCcccccccccccccCCCCCCCCcceeecCCCCCccccccccC
Q 013439            1 MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRTGP   80 (443)
Q Consensus         1 M~EIItlq~Gq~gn~iG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~~~~~~   80 (443)
                      ||||||||+||||||||.+||+++|+||||.++|.+.+..+...++.++||+|+..++|+||||+|||||+||+.+++++
T Consensus         1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~   80 (443)
T COG5023           1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGP   80 (443)
T ss_pred             CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCc
Confidence            99999999999999999999999999999999999877777677899999999999999999999999999999999999


Q ss_pred             CCcccCCCccccccCCCCCCCcccccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcC
Q 013439           81 YGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYP  160 (443)
Q Consensus        81 ~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp  160 (443)
                      ++.+|+|++++.|++|+|||||+|+|+.|+++.|+++|+|||++|.||.||||+++||+|||||||+|+.|||+|+++||
T Consensus        81 y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eyp  160 (443)
T COG5023          81 YGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYP  160 (443)
T ss_pred             cccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCeeEEecCcchhhhhhcccCCCCCCcccccHHHHHhhccCcccc
Q 013439          161 DRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCL  240 (443)
Q Consensus       161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~  240 (443)
                      ||.+.+|+|+|.++.++++|||||++|++++|.|+||+++++||++|+++|.+.+++.+|+|.++|++||++++++|.++
T Consensus       161 kK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTtsl  240 (443)
T COG5023         161 KKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTTSL  240 (443)
T ss_pred             hhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhhee
Confidence            99999999999989999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcccHHhhhhcccccCCcccccccccccccccccccccCCHHHHHhhcccCCCcccccCCCCCcceeeecccccC
Q 013439          241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGK  320 (443)
Q Consensus       241 r~~~~~n~~l~~~~~~L~p~p~~~~l~~~~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~  320 (443)
                      ||||++|.||++|.++|+||||+||+.++|+|+..+.+..+++.|+.++++++|.|+|+|++|+|+.|+|++++.++||+
T Consensus       241 RfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~rG~  320 (443)
T COG5023         241 RFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFRGD  320 (443)
T ss_pred             ecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHhcC
Confidence            99999999999999999999999999999999999988899999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHhhccCCcceecccCCCcceeeccCCC---CCCCcceeeccCChhhHHHHHHHHHHHHhhccccccccc
Q 013439          321 MSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPP---TGLSMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHW  397 (443)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~---~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~krAflh~  397 (443)
                      +.++++++++.+++.|+..+|++|+|+++++++|+++|   ...+.++|+|+|+|+|.+.|+++.++|++||+|||||||
T Consensus       321 v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~krAFlhw  400 (443)
T COG5023         321 VDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSEPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHW  400 (443)
T ss_pred             CCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcccccceeeeEeecCcHHHHHHHHHhhhHHHHHHHhhHHHHH
Confidence            99999999999999999999999999999999999998   677899999999999999999999999999999999999


Q ss_pred             ccCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 013439          398 YTGEGMDEMEFTEAESNMNDLVSEYQQYQEAAAEEE  433 (443)
Q Consensus       398 Y~~~G~ee~eF~ea~~~l~~l~~~Y~~~~~~~~~~~  433 (443)
                      |.++||||+||.||+++|+++.++|++++++.++++
T Consensus       401 Y~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~~  436 (443)
T COG5023         401 YVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDD  436 (443)
T ss_pred             HhhccCcccchhhHHHHHHHHHHHHHHhccccccch
Confidence            999999999999999999999999999987765533

>PLN00221 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00010 tubulin beta chain; Provisional Back     alignment and domain information
>PTZ00335 tubulin alpha chain; Provisional Back     alignment and domain information
>PLN00220 tubulin beta chain; Provisional Back     alignment and domain information
>PLN00222 tubulin gamma chain; Provisional Back     alignment and domain information
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PTZ00387 epsilon tubulin; Provisional Back     alignment and domain information
>KOG1374 consensus Gamma tubulin [Cytoskeleton] Back     alignment and domain information
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1376 consensus Alpha tubulin [Cytoskeleton] Back     alignment and domain information
>KOG1375 consensus Beta tubulin [Cytoskeleton] Back     alignment and domain information
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton] Back     alignment and domain information
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>TIGR00065 ftsZ cell division protein FtsZ Back     alignment and domain information
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>PRK13018 cell division protein FtsZ; Provisional Back     alignment and domain information
>PF14881 Tubulin_3: Tubulin domain Back     alignment and domain information
>PRK09330 cell division protein FtsZ; Validated Back     alignment and domain information
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology [] Back     alignment and domain information
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning] Back     alignment and domain information
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information
>PF13809 Tubulin_2: Tubulin like Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
3du7_B445 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 0.0
4f61_B445 Tubulin:stathmin-Like Domain Complex Length = 445 0.0
1z2b_B445 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 0.0
4drx_B431 Gtp-Tubulin In Complex With A Darpin Length = 431 0.0
4i4t_B445 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 0.0
3ryc_B445 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 0.0
1ffx_B445 Tubulin:stathmin-Like Domain Complex Length = 445 0.0
2xrp_A445 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 0.0
1tub_B427 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 0.0
4ffb_B463 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 0.0
4i4t_A450 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 3e-99
3ryc_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 3e-99
4drx_A437 Gtp-Tubulin In Complex With A Darpin Length = 437 3e-99
1z2b_A448 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 1e-98
1sa0_A451 Tubulin-Colchicine: Stathmin-Like Domain Complex Le 1e-98
3hkb_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 2e-98
3du7_A449 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 2e-98
1ffx_A451 Tubulin:stathmin-Like Domain Complex Length = 451 3e-98
2xrp_B452 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 7e-98
1jff_A451 Refined Structure Of Alpha-Beta Tubulin From Zinc-I 7e-98
1tub_A440 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 7e-98
4ffb_A447 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 4e-97
2btq_B426 Structure Of Btubab Heterodimer From Prosthecobacte 6e-85
3cb2_A475 Crystal Structure Of Human Gamma-Tubulin Bound To G 4e-78
1z5v_A474 Crystal Structure Of Human Gamma-Tubulin Bound To G 4e-78
2bto_A473 Structure Of Btuba From Prosthecobacter Dejongeii L 1e-72
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure 
Iteration: 1

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/420 (80%), Positives = 383/420 (91%)
Query: 1   MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHV 60
           MREI+HIQAGQCGNQIG KFWEV+ DEHGIDPTG+Y G+S +QLER+NVY+NEA+G ++V
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61  PRAVLMDLEPGTMDSLRTGPYGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRA+L+DLEPGTMDS+R+GP+GQIFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RKEAENCDCLQGFQICHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDTVV 180
           RKE+E+CDCLQGFQ+ H              ISKIREEYPDR+M TFSV PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCL 240
           EPYNATLSVHQLVEN DE   +DNEALYDICFRTLKLT P++GDLNHL+S TMSGVT CL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQQMWDSKNMM 300
           RFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLT+RGSQQYRALT+PELTQQM+DSKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300
Query: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPTG 360
            A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIP+NVK++VCDIPP G
Sbjct: 301 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG 360
Query: 361 LSMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
           L MS+TF+GNST+IQE+F+R+SEQFT MF+RKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 361 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431 Back     alignment and structure
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445 Back     alignment and structure
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445 Back     alignment and structure
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427 Back     alignment and structure
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463 Back     alignment and structure
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 450 Back     alignment and structure
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin Length = 437 Back     alignment and structure
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 448 Back     alignment and structure
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 449 Back     alignment and structure
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 452 Back     alignment and structure
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sheets Stabilized With Taxol Length = 451 Back     alignment and structure
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 440 Back     alignment and structure
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 447 Back     alignment and structure
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter Dejongeii Length = 426 Back     alignment and structure
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp Length = 475 Back     alignment and structure
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gtpgammas Length = 474 Back     alignment and structure
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query443
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 0.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 0.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 0.0
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 0.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 0.0
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 5e-07
4ei7_A389 Plasmid replication protein REPX; GTP hydrolase, p 7e-05
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 Back     alignment and structure
 Score =  800 bits (2067), Expect = 0.0
 Identities = 364/442 (82%), Positives = 414/442 (93%)

Query: 1   MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHV 60
           MREI+HIQAGQCGNQIG KFWEV+ DEHGIDPTG+Y G+S +QLER+NVY+NEA+G ++V
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60

Query: 61  PRAVLMDLEPGTMDSLRTGPYGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRA+L+DLEPGTMDS+R+GP+GQIFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 121 RKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVV 180
           RKE+E+CDCLQGFQ+ HSLGGGTGSGMGTLLISKIREEYPDR+M TFSV PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCL 240
           EPYNATLSVHQLVEN DE   +DNEALYDICFRTLKLT P++GDLNHL+S TMSGVT CL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQQMWDSKNMM 300
           RFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLT+RGSQQYRALT+PELTQQM+DSKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300

Query: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPTG 360
            A DPRHGRYLT + +FRG+MS KEVDEQM+N+QNKNSSYFVEWIP+NVK++VCDIPP G
Sbjct: 301 AACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRG 360

Query: 361 LSMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
           L MSSTF+GNST+IQE+F+R+SEQFT MF+RKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 361 LKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420

Query: 421 EYQQYQEAAAEEEEEYDEEADE 442
           EYQQYQ+A A+E+ E++EE  E
Sbjct: 421 EYQQYQDATADEQGEFEEEEGE 442
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Back     alignment and structure
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Length = 360 Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Length = 389 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query443
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 100.0
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 100.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 100.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 100.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 100.0
1w5f_A353 Cell division protein FTSZ; complete proteome, GTP 100.0
2vap_A364 FTSZ, cell division protein FTSZ homolog 1; polyme 100.0
2r75_1338 Cell division protein FTSZ; GTPase, tubulin-like, 100.0
1ofu_A320 FTSZ, cell division protein FTSZ; bacterial cell d 100.0
2vaw_A394 FTSZ, cell division protein FTSZ; bacterial cell d 100.0
1rq2_A382 Cell division protein FTSZ; cell cycle, tubulin, G 100.0
2vxy_A382 FTSZ, cell division protein FTSZ; GTP-binding, nuc 100.0
3m89_A427 FTSZ/tubulin-related protein; partition, TUBZ, GTP 100.0
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 99.96
4dxd_A396 Cell division protein FTSZ; rossmann fold, GTPase, 99.96
4ei7_A389 Plasmid replication protein REPX; GTP hydrolase, p 99.68
3r4v_A315 Putative uncharacterized protein; tubulin, unknown 99.1
2e4h_B36 Tubulin alpha-ubiquitous chain; cytoskeleton, CAP- 96.43
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ... Back     alignment and structure
Probab=100.00  E-value=1.6e-123  Score=948.75  Aligned_cols=440  Identities=83%  Similarity=1.361  Sum_probs=421.9

Q ss_pred             CeeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCcccccccccccccCCCCCCCCcceeecCCCCCccccccccC
Q 013439            1 MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRTGP   80 (443)
Q Consensus         1 M~EIItlq~Gq~gn~iG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~~~~~~   80 (443)
                      |||||+||+||||||||.+||+++|.||+|+++|.+.++.+.+.+++++||+|+..++|+||||||||||+||++++.++
T Consensus         1 mrEii~i~vGQcGnQiG~~~We~~~~EHgi~~~g~~~~~~~~~~~~~~~fF~e~~~~~~vpRavlvDlEp~vid~i~~g~   80 (445)
T 3ryc_B            1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGP   80 (445)
T ss_dssp             CCEEEEEEEHHHHHHHHHHHHHHHHHHTTBCTTSBBCCSCTHHHHTGGGTEEECSTTBEEECEEEEESSSHHHHHHHTST
T ss_pred             CceEEEEecCCcHHHHHHHHHHHHHHHhCCCCCCCccCCccccccchhhccccCCCCccccceeEecCCchhhhhhhccc
Confidence            99999999999999999999999999999999999988777777889999999999999999999999999999999999


Q ss_pred             CCcccCCCccccccCCCCCCCcccccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcC
Q 013439           81 YGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYP  160 (443)
Q Consensus        81 ~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp  160 (443)
                      ++++|+|+++++|++|+|||||+|||+.|+++.|+++|+||+++|+||.||||+++||+|||||||+|+.|+|+|+++||
T Consensus        81 ~~~lf~p~~~i~g~~gAgNN~A~G~yt~G~e~~d~v~d~IRk~~E~cd~lqGf~i~hSlgGGTGSG~gs~lle~L~~ey~  160 (445)
T 3ryc_B           81 FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYP  160 (445)
T ss_dssp             TGGGSCGGGEEECSSCCTTCHHHHHHSHHHHHHHHHHHHHHHHHHTCSSEEEEEEEEESSSSHHHHHHHHHHHHHHHHCT
T ss_pred             ccceecccceEEccccccCCccccchhhhHHHHHHHHHHHHHHHHcCCccceEEEEeecCCCCCCcHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCeeEEecCcchhhhhhcccCCCCCCcccccHHHHHhhccCcccc
Q 013439          161 DRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCL  240 (443)
Q Consensus       161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~  240 (443)
                      ++.+++++|+|++..++++++|||++|++++|.+++|+++++||++|+++|.+.+++..|+|.++|++||++++++|+++
T Consensus       161 kk~~~~~sV~Psp~~s~~vvepYNa~Lsl~~L~e~sD~~~~iDNeaL~~ic~~~l~i~~p~y~~lN~lIa~~~s~iT~sl  240 (445)
T 3ryc_B          161 DRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL  240 (445)
T ss_dssp             TSEEEEEEEECCGGGCSCTTHHHHHHHHHHHHHHHCSEEEEEEHHHHHHHHHHTSCCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccceEEEEeCCccccccccchhhhhhHhhhhcccceeEeecchhHHHHHHhccCCCCCcchhhHHHHHhcchhhcccc
Confidence            99999999999977889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcccHHhhhhcccccCCcccccccccccccccccccccCCHHHHHhhcccCCCcccccCCCCCcceeeecccccC
Q 013439          241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTARGSQQYRALTIPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGK  320 (443)
Q Consensus       241 r~~~~~n~~l~~~~~~L~p~p~~~~l~~~~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~  320 (443)
                      ||||.+|.||.+|.+||||||++||+.++++|++...+..++++++.+|++++|+++|+|++|+|.+|+|+++++++||+
T Consensus       241 Rf~G~lN~Dl~~l~tnLVP~PrlhF~~~s~aP~~s~~~~~~~~~sv~elt~~~f~~~n~m~~~dp~~gky~a~~~~~RG~  320 (445)
T 3ryc_B          241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVATIFRGR  320 (445)
T ss_dssp             HSCCSSSCSHHHHHHHHCSSTTCCEEEEEEESCCCTTCCCCCCCCHHHHHHHTTSGGGBSSSCCGGGSCEEEEEEEEEES
T ss_pred             ccCcccccCHHHHhhcccCCCceeeeccccCcccccchhhhccCCHHHHHHHHHhhcCCeeecCCCCCcceeeeeeeecC
Confidence            99999999999999999999999999999999999888888999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHhhccCCcceecccCCCcceeeccCCCCCCCcceeeccCChhhHHHHHHHHHHHHhhcccccccccccC
Q 013439          321 MSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPTGLSMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTG  400 (443)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~krAflh~Y~~  400 (443)
                      +.++++.+++.+++.|++++|++|+|+++|+++|.+||.++++++++|+|+|+|.++|+++.+||++||+||||||||++
T Consensus       321 v~~kdv~~~i~~ik~k~~~~Fv~W~p~~~k~~i~~~pp~~~~~s~~~lsNsTaI~~~~~rl~~kFd~m~~krAFvHwY~~  400 (445)
T 3ryc_B          321 MSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG  400 (445)
T ss_dssp             CCHHHHHHHHHHHHHHTGGGBCTTSTTCEEEEEESSCCTTCSEEEEEEEEEGGGHHHHHHHHHHHHHHHTTTTTTHHHHT
T ss_pred             CChHHHHHHHHHHHhhCcccCcccCCCceeeeeeccCCcccceeeeeecCcHHHHHHHHHHHHHHHhhhhcccchhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChhhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhh
Q 013439          401 EGMDEMEFTEAESNMNDLVSEYQQYQEAAAEEEEEYDEEA  440 (443)
Q Consensus       401 ~G~ee~eF~ea~~~l~~l~~~Y~~~~~~~~~~~~~~~~~~  440 (443)
                      |||||+||.||+++|++|+++|++++++..+++++++|++
T Consensus       401 eGmee~eF~EA~e~l~~L~~eY~~~~~~~~~~~~~~~~~~  440 (445)
T 3ryc_B          401 EGMDEMEFTEAESNMNDLVSEYQQYQDATADEQGEFEEEE  440 (445)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHHCCTTC--------
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHhccCCccccccchh
Confidence            9999999999999999999999999887666554444443
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ... Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Back     alignment and structure
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* Back     alignment and structure
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* Back     alignment and structure
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* Back     alignment and structure
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* Back     alignment and structure
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Back     alignment and structure
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A* Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Back     alignment and structure
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET: GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A* Back     alignment and structure
>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex structure, solution structure, CLIP, structural protein; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 443
d1tubb1243 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus 1e-137
d1tuba1245 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus 1e-125
d2btoa1244 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec 1e-118
d1tubb2184 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Su 1e-94
d1tuba2195 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (S 6e-89
d2btoa2180 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosth 3e-83
d1ofua1198 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Ps 7e-07
d2vapa1209 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Ar 9e-05
d1rq2a1198 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Myc 0.002
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 243 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  390 bits (1004), Expect = e-137
 Identities = 203/243 (83%), Positives = 228/243 (93%)

Query: 1   MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHV 60
           MREI+HIQAGQCGNQIG KFWEV+ DEHGIDPTG+Y G+S +QLER+NVY+NEA+G ++V
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60

Query: 61  PRAVLMDLEPGTMDSLRTGPYGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRA+L+DLEPGTMDS+R+GP+GQIFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 121 RKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVV 180
           RKE+E+CDCLQGFQ+ HSLGGGTGSGMGTLLISKIREEYPDR+M TFSV PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCL 240
           EPYNATLSVHQLVEN DE   +DNEALYDICFRTLKLT P++GDLNHL+S TMSGVT CL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 241 RFP 243
           RFP
Sbjct: 241 RFP 243
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245 Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244 Back     information, alignment and structure
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 184 Back     information, alignment and structure
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 195 Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 180 Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Length = 198 Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 209 Back     information, alignment and structure
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Length = 198 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query443
d1tubb1243 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d1tuba1245 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d2btoa1244 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1tubb2184 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d1tuba2195 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d2btoa2180 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1ofua1198 Cell-division protein FtsZ {Pseudomonas aeruginosa 99.59
d1w5fa1194 Cell-division protein FtsZ {Thermotoga maritima [T 99.58
d2vapa1209 Cell-division protein FtsZ {Archaeon Methanococcus 99.57
d1rq2a1198 Cell-division protein FtsZ {Mycobacterium tubercul 99.55
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=9.2e-76  Score=553.92  Aligned_cols=243  Identities=84%  Similarity=1.394  Sum_probs=237.0

Q ss_pred             CeeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCcccccccccccccCCCCCCCCcceeecCCCCCccccccccC
Q 013439            1 MREILHIQAGQCGNQIGGKFWEVVCDEHGIDPTGNYVGNSQVQLERVNVYFNEASGGRHVPRAVLMDLEPGTMDSLRTGP   80 (443)
Q Consensus         1 M~EIItlq~Gq~gn~iG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~l~vD~e~~~i~~~~~~~   80 (443)
                      |||||+||+||||||||.+||+++++||+++++|.+..+.+...++.++||+|...++|+||||+||+||++|++++.++
T Consensus         1 MrEiI~iqvGQcGnQIG~~fw~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~Ep~vi~~i~~~~   80 (243)
T d1tubb1           1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGP   80 (243)
T ss_dssp             CCEEEEEECHHHHHHHHHHHGGGTTTSCCSSCCCSSSSCCCCSSCCSSCCSSTTTTSTTCCCCEECCSSSHHHHHHSSSS
T ss_pred             CCcEEEEeccChHHHHHHHHHHHHHHHcCCCCCCCCCCCcccchhccccccccCCCCccccceeEecCCcchhhhhccCc
Confidence            99999999999999999999999999999999998877777777889999999999999999999999999999999999


Q ss_pred             CCcccCCCccccccCCCCCCCcccccccchhhHHHHHHHHHHHHhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcC
Q 013439           81 YGQIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYP  160 (443)
Q Consensus        81 ~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~s~~GGtGSG~~s~lle~l~d~yp  160 (443)
                      ++++|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||
T Consensus        81 ~~~~f~~~~~i~~~~gagNNwA~Gy~~~G~~~~d~i~d~iRk~~E~cD~l~gf~~~hSl~GGTGSGlGs~l~e~L~d~yp  160 (243)
T d1tubb1          81 FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYP  160 (243)
T ss_dssp             SCCCCSSSCCCCTTCCCCSSTHHHHTSHHHHHHHHHHHHHHHHHHSSSCEEEEEEECCTTCSTTTTTHHHHHHHHHHHCS
T ss_pred             cccccCccceEEcccCcccceeeeeeccCHHHHHHHHHHHHHHHHhCCCcCceEEEeeccCccccchHHHHHHHHhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeEEEEecCCCCCcccchhhHHHHHHHHHhhcCCeeEEecCcchhhhhhcccCCCCCCcccccHHHHHhhccCcccc
Q 013439          161 DRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCL  240 (443)
Q Consensus       161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~  240 (443)
                      ++.+++++|+|++..+++++||||++|+|++|.+++|+++++||++|+++|.+.+++..|+|.++|++||++|+++|+++
T Consensus       161 ~~~~~~~~V~P~~~~~~vvvqpYNtvLsl~~L~~~ad~v~~~dN~al~~i~~~~~~~~~~s~~~~N~~Ia~~ls~~T~s~  240 (243)
T d1tubb1         161 DRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL  240 (243)
T ss_dssp             SSCEEECCCCCCTTCSCSSTTHHHHHHHHHHHSSSEEEECCCCHHHHHHHTTTTSCCSSCCHHHHHHHHHHHHHHHHTBT
T ss_pred             cceEEEEeecCCcccCcccccchHHHHhHHHHHhhCCeEEEeeHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhhcc
Confidence            99999999999877899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCC
Q 013439          241 RFP  243 (443)
Q Consensus       241 r~~  243 (443)
                      |||
T Consensus       241 RFP  243 (243)
T d1tubb1         241 RFP  243 (243)
T ss_dssp             TBS
T ss_pred             cCC
Confidence            998
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure