Citrus Sinensis ID: 013521

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-
MYVDQVHPKCSTTPLKATVPFTMDFFLSSRWPVPRHCTEVSRNVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL
ccccccccccccccccccccccccccccccccccccccccccccHHHccccccccHHHHHHHHHHHHHcccccEEEcccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHccccEEEcccccccccccccHHccccccccccccccccEEEECccccccccccccccccccEEEEccccccHHccccHHHHHHHHHHHHHcccEEEEEHHccccccccccccccccccccEEEEEEEcccccccccccEEEEEECccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccCCcccccccEEEECcccccHHHHHHHHHHHccEEEccccccccccccEEEEEccccHHHHHHHHHHHHHHc
***********TTPLKATVPFTMDFFLSSRWPVPRHCTEVSRNVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MYVDQVHPKCSTTPLKATVPFTMDFFLSSRWPVPRHCTEVSRNVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Probable LL-diaminopimelate aminotransferase, chloroplastic Required for lysine biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli.confidentQ10MQ2
Aminotransferase ALD1 Aminotransferase involved in local and systemic acquired resistance (SAR) to the bacterial pathogen P.syringae. Required for salicylic acid (SA) and camalexin accumulation upon pathogen infection. Possesses aminotransferase activity in vitro and may generate amino-acid-derived defense signals in vivo. May be involved in ethylene-induced senescence signaling.probableQ9ZQI7
LL-diaminopimelate aminotransferase Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli. Is also able to use meso-diaminopimelate, lysine or ornithine as substrates.probableQ6MDE0

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
2.-.-.-Transferases.probable
2.6.-.-Transferring nitrogenous groups.probable
2.6.1.-Transaminases (aminotransferases).probable
2.6.1.83LL-diaminopimelate aminotransferase.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3QGU, chain A
Confidence level:very confident
Coverage over the Query: 45-441
View the alignment between query and template
View the model in PyMOL
Template: 4FL0, chain A
Confidence level:very confident
Coverage over the Query: 29-441
View the alignment between query and template
View the model in PyMOL